Query 001965
Match_columns 989
No_of_seqs 524 out of 3139
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 13:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0468 U5 snRNP-specific prot 100.0 6E-260 1E-264 2142.5 67.4 970 1-988 1-971 (971)
2 KOG0469 Elongation factor 2 [T 100.0 3E-191 5E-196 1547.6 46.1 824 123-970 2-840 (842)
3 PLN00116 translation elongatio 100.0 1E-159 2E-164 1480.6 83.5 826 123-971 2-842 (843)
4 PTZ00416 elongation factor 2; 100.0 1E-158 2E-163 1469.2 81.3 824 123-971 2-835 (836)
5 KOG0467 Translation elongation 100.0 4E-141 9E-146 1208.9 47.7 815 134-981 3-881 (887)
6 PRK07560 elongation factor EF- 100.0 8E-129 2E-133 1192.4 71.0 719 127-970 7-731 (731)
7 COG0480 FusA Translation elong 100.0 3E-126 5E-131 1136.4 64.7 674 137-959 7-697 (697)
8 TIGR00490 aEF-2 translation el 100.0 6E-125 1E-129 1155.4 67.0 712 127-962 6-720 (720)
9 PRK12739 elongation factor G; 100.0 2E-113 4E-118 1051.9 65.7 663 137-927 5-680 (691)
10 PRK00007 elongation factor G; 100.0 2E-112 5E-117 1041.0 64.7 663 137-927 7-683 (693)
11 PRK13351 elongation factor G; 100.0 8E-110 2E-114 1022.7 65.1 667 137-931 5-684 (687)
12 TIGR00484 EF-G translation elo 100.0 4E-109 8E-114 1014.5 64.9 664 137-931 7-684 (689)
13 KOG0465 Mitochondrial elongati 100.0 4E-110 9E-115 936.2 40.8 664 138-930 37-716 (721)
14 PRK12740 elongation factor G; 100.0 2E-101 5E-106 946.6 63.0 653 146-931 1-666 (668)
15 KOG0464 Elongation factor G [T 100.0 2.4E-86 5.2E-91 710.6 29.5 666 137-924 34-738 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 2.8E-72 6E-77 670.6 49.5 467 140-929 1-477 (594)
17 PRK10218 GTP-binding protein; 100.0 2.3E-70 4.9E-75 652.8 50.4 467 137-926 2-479 (607)
18 PRK05433 GTP-binding protein L 100.0 1.4E-69 3E-74 649.7 50.4 499 135-954 2-519 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 1.4E-68 3E-73 640.6 50.6 496 139-954 2-516 (595)
20 PRK00741 prfC peptide chain re 100.0 1.4E-62 2.9E-67 580.5 39.1 446 135-683 5-472 (526)
21 KOG0462 Elongation factor-type 100.0 3.7E-62 8E-67 544.7 35.4 475 136-927 55-536 (650)
22 TIGR00503 prfC peptide chain r 100.0 6.9E-61 1.5E-65 566.1 40.1 452 132-679 3-469 (527)
23 COG1217 TypA Predicted membran 100.0 1.3E-60 2.8E-65 522.6 37.6 467 138-927 3-479 (603)
24 COG0481 LepA Membrane GTPase L 100.0 6.8E-55 1.5E-59 479.1 37.7 470 137-923 6-484 (603)
25 COG4108 PrfC Peptide chain rel 100.0 1.5E-47 3.3E-52 418.6 28.2 443 138-675 10-466 (528)
26 cd01683 EF2_IV_snRNP EF-2_doma 100.0 1.3E-45 2.8E-50 377.3 18.0 178 673-850 1-178 (178)
27 cd01885 EF2 EF2 (for archaea a 100.0 6E-42 1.3E-46 363.8 18.8 202 141-345 1-212 (222)
28 cd01681 aeEF2_snRNP_like_IV Th 100.0 1E-38 2.2E-43 328.4 16.7 177 673-849 1-177 (177)
29 cd01886 EF-G Elongation factor 100.0 4.4E-36 9.5E-41 328.5 23.8 262 142-457 1-270 (270)
30 cd04169 RF3 RF3 subfamily. Pe 100.0 2.7E-33 5.8E-38 306.3 21.6 254 139-457 1-267 (267)
31 cd04167 Snu114p Snu114p subfam 100.0 3.1E-33 6.7E-38 296.8 20.5 202 141-344 1-202 (213)
32 CHL00071 tufA elongation facto 100.0 1.4E-31 3.1E-36 310.3 28.9 297 133-583 5-305 (409)
33 cd04168 TetM_like Tet(M)-like 100.0 9.5E-32 2.1E-36 289.4 21.6 229 142-457 1-237 (237)
34 PRK12736 elongation factor Tu; 100.0 4E-31 8.6E-36 305.2 27.6 283 137-583 9-295 (394)
35 COG5256 TEF1 Translation elong 100.0 1.5E-30 3.3E-35 286.8 26.4 288 136-583 3-314 (428)
36 PLN03126 Elongation factor Tu; 100.0 1.1E-29 2.4E-34 297.3 30.8 305 125-583 66-374 (478)
37 TIGR00485 EF-Tu translation el 100.0 1.2E-29 2.5E-34 293.3 27.6 284 136-583 8-295 (394)
38 PLN00043 elongation factor 1-a 100.0 1.1E-29 2.3E-34 296.3 26.6 290 137-583 4-316 (447)
39 PRK12735 elongation factor Tu; 100.0 1.9E-29 4E-34 291.6 27.9 286 136-583 8-297 (396)
40 PTZ00141 elongation factor 1- 100.0 2E-29 4.2E-34 294.3 27.7 291 136-583 3-316 (446)
41 cd04170 EF-G_bact Elongation f 100.0 6E-30 1.3E-34 281.2 21.5 260 142-457 1-268 (268)
42 PRK00049 elongation factor Tu; 100.0 6.7E-29 1.4E-33 286.8 27.5 286 136-583 8-297 (396)
43 TIGR02034 CysN sulfate adenyly 100.0 4.6E-28 1E-32 280.7 27.7 150 142-304 2-166 (406)
44 PLN03127 Elongation factor Tu; 100.0 5.9E-28 1.3E-32 281.5 28.4 287 137-583 58-348 (447)
45 PRK12317 elongation factor 1-a 100.0 4.4E-28 9.6E-33 283.3 26.9 287 138-583 4-308 (425)
46 PRK05306 infB translation init 100.0 2.6E-27 5.6E-32 289.1 31.9 316 137-653 287-629 (787)
47 KOG0460 Mitochondrial translat 100.0 8E-29 1.7E-33 263.8 15.9 273 137-572 51-327 (449)
48 PRK05124 cysN sulfate adenylyl 100.0 3.6E-27 7.8E-32 277.3 28.6 285 137-583 24-326 (474)
49 COG0050 TufB GTPases - transla 100.0 5.3E-28 1.2E-32 253.3 18.1 282 137-582 9-294 (394)
50 TIGR00483 EF-1_alpha translati 100.0 8.5E-27 1.8E-31 272.5 28.2 290 135-583 2-310 (426)
51 PF00009 GTP_EFTU: Elongation 99.9 7.4E-28 1.6E-32 250.6 9.5 175 138-334 1-176 (188)
52 TIGR00487 IF-2 translation ini 99.9 8.3E-25 1.8E-29 261.9 32.2 314 138-653 85-427 (587)
53 PTZ00327 eukaryotic translatio 99.9 2.5E-25 5.4E-30 258.9 26.1 142 137-304 31-202 (460)
54 KOG0458 Elongation factor 1 al 99.9 3.4E-25 7.3E-30 252.2 24.5 280 135-569 172-471 (603)
55 COG2895 CysN GTPases - Sulfate 99.9 2.4E-25 5.1E-30 239.2 20.1 174 142-331 8-200 (431)
56 CHL00189 infB translation init 99.9 8E-25 1.7E-29 265.0 25.8 121 137-277 241-361 (742)
57 PRK05506 bifunctional sulfate 99.9 1.2E-24 2.7E-29 265.6 27.6 151 141-304 25-190 (632)
58 COG5257 GCD11 Translation init 99.9 3.4E-24 7.4E-29 227.4 23.2 322 138-650 8-362 (415)
59 cd01884 EF_Tu EF-Tu subfamily. 99.9 4.1E-25 8.9E-30 231.0 15.5 167 141-332 3-170 (195)
60 PRK10512 selenocysteinyl-tRNA- 99.9 1.2E-23 2.6E-28 253.7 27.1 252 142-583 2-258 (614)
61 PRK04000 translation initiatio 99.9 3.1E-23 6.7E-28 240.5 26.5 125 137-277 6-153 (411)
62 TIGR03680 eif2g_arch translati 99.9 1.1E-22 2.3E-27 236.1 26.0 123 139-277 3-148 (406)
63 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.9E-23 4E-28 221.2 16.4 151 142-305 1-164 (208)
64 TIGR00475 selB selenocysteine- 99.9 3.6E-22 7.7E-27 240.4 26.1 132 142-304 2-134 (581)
65 cd01883 EF1_alpha Eukaryotic e 99.9 2.5E-23 5.3E-28 222.0 13.9 172 142-332 1-192 (219)
66 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 5E-23 1.1E-27 183.8 7.9 80 845-924 1-80 (80)
67 KOG1145 Mitochondrial translat 99.9 7.3E-21 1.6E-25 214.1 20.9 119 138-279 151-269 (683)
68 COG0532 InfB Translation initi 99.9 3.6E-20 7.7E-25 211.7 23.4 119 139-278 4-122 (509)
69 COG3276 SelB Selenocysteine-sp 99.8 3.6E-20 7.8E-25 206.5 21.1 115 142-277 2-117 (447)
70 PRK04004 translation initiatio 99.8 1E-19 2.2E-24 218.8 26.6 132 138-276 4-136 (586)
71 cd01891 TypA_BipA TypA (tyrosi 99.8 1.5E-20 3.3E-25 196.6 16.6 170 139-333 1-170 (194)
72 cd01890 LepA LepA subfamily. 99.8 7.1E-20 1.5E-24 188.0 16.8 132 141-276 1-132 (179)
73 KOG0461 Selenocysteine-specifi 99.8 3.5E-19 7.6E-24 190.3 18.9 147 140-304 7-157 (522)
74 KOG0459 Polypeptide release fa 99.8 8.4E-20 1.8E-24 199.3 14.0 172 136-318 75-266 (501)
75 smart00838 EFG_C Elongation fa 99.8 2E-20 4.3E-25 169.3 7.4 83 843-927 1-83 (85)
76 PF00679 EFG_C: Elongation fac 99.8 1.6E-20 3.5E-25 171.4 6.6 87 842-929 1-87 (89)
77 COG5258 GTPBP1 GTPase [General 99.8 1.1E-18 2.3E-23 189.3 20.2 279 137-569 114-418 (527)
78 cd01888 eIF2_gamma eIF2-gamma 99.8 3.5E-19 7.5E-24 187.8 15.4 156 141-332 1-186 (203)
79 cd04096 eEF2_snRNP_like_C eEF2 99.8 1.8E-19 3.8E-24 161.2 7.4 80 845-924 1-80 (80)
80 PF03764 EFG_IV: Elongation fa 99.8 1.2E-19 2.6E-24 175.2 6.7 100 735-840 21-120 (120)
81 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.1E-19 4.6E-24 159.8 7.5 78 845-924 1-78 (78)
82 cd03711 Tet_C Tet_C: C-terminu 99.8 3E-19 6.5E-24 158.9 7.1 78 845-924 1-78 (78)
83 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 3.8E-19 8.2E-24 158.3 7.2 78 845-924 1-78 (78)
84 TIGR00491 aIF-2 translation in 99.8 3.3E-17 7.2E-22 196.3 25.5 119 139-276 3-134 (590)
85 cd01889 SelB_euk SelB subfamil 99.8 4.3E-18 9.3E-23 177.7 15.5 124 142-277 2-134 (192)
86 cd01514 Elongation_Factor_C El 99.8 8.7E-19 1.9E-23 156.4 7.4 79 845-924 1-79 (79)
87 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.5E-18 1.2E-22 181.1 12.6 147 143-304 2-169 (224)
88 cd03710 BipA_TypA_C BipA_TypA_ 99.7 6.2E-18 1.3E-22 150.8 8.0 78 845-923 1-78 (79)
89 cd00881 GTP_translation_factor 99.7 3.9E-17 8.4E-22 168.4 14.8 174 142-333 1-175 (189)
90 PF14492 EFG_II: Elongation Fa 99.7 6.6E-18 1.4E-22 148.8 7.4 73 600-673 2-75 (75)
91 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 3.5E-17 7.6E-22 150.9 11.7 94 490-583 1-94 (94)
92 KOG0466 Translation initiation 99.7 1E-17 2.2E-22 176.7 8.8 283 137-583 35-352 (466)
93 cd04171 SelB SelB subfamily. 99.7 6.2E-16 1.3E-20 155.7 15.6 115 142-276 2-117 (164)
94 cd03709 lepA_C lepA_C: This fa 99.7 6.3E-17 1.4E-21 144.6 7.3 78 845-923 1-79 (80)
95 PRK14845 translation initiatio 99.6 1.3E-14 2.9E-19 181.4 23.5 105 153-276 474-591 (1049)
96 cd03690 Tet_II Tet_II: This su 99.6 3.5E-15 7.6E-20 135.0 10.0 84 487-582 1-84 (85)
97 KOG1144 Translation initiation 99.6 4.9E-15 1.1E-19 171.2 13.1 144 142-304 477-637 (1064)
98 COG1160 Predicted GTPases [Gen 99.6 1E-14 2.2E-19 164.8 14.6 150 140-332 178-338 (444)
99 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 2.2E-14 4.7E-19 145.3 15.6 115 142-277 2-116 (168)
100 cd04092 mtEFG2_II_like mtEFG2_ 99.6 7.3E-15 1.6E-19 132.3 10.6 83 490-583 1-83 (83)
101 PRK00093 GTP-binding protein D 99.6 1.5E-14 3.3E-19 170.1 16.3 150 139-333 172-332 (435)
102 cd03700 eEF2_snRNP_like_II EF2 99.6 1.4E-14 3.1E-19 133.4 11.4 87 490-576 1-87 (93)
103 TIGR03594 GTPase_EngA ribosome 99.6 2.2E-14 4.7E-19 168.5 14.5 151 139-333 171-332 (429)
104 COG1159 Era GTPase [General fu 99.6 3.1E-14 6.6E-19 153.2 14.1 113 142-277 8-128 (298)
105 cd01680 EFG_like_IV Elongation 99.6 2.2E-14 4.8E-19 137.6 11.1 112 678-840 1-116 (116)
106 cd04088 EFG_mtEFG_II EFG_mtEFG 99.5 3.2E-14 6.9E-19 128.2 10.4 82 490-582 1-82 (83)
107 cd01895 EngA2 EngA2 subfamily. 99.5 4.9E-13 1.1E-17 135.3 15.3 115 140-277 2-127 (174)
108 COG1160 Predicted GTPases [Gen 99.5 1.7E-13 3.7E-18 155.0 12.9 114 141-277 4-126 (444)
109 cd03689 RF3_II RF3_II: this su 99.5 2.1E-13 4.6E-18 123.3 10.0 81 492-583 1-84 (85)
110 cd04091 mtEFG1_II_like mtEFG1_ 99.5 2.6E-13 5.6E-18 121.7 10.5 80 490-582 1-80 (81)
111 cd04160 Arfrp1 Arfrp1 subfamil 99.5 2.8E-13 6.1E-18 137.3 12.2 116 142-277 1-121 (167)
112 cd03691 BipA_TypA_II BipA_TypA 99.5 3.2E-13 6.9E-18 122.5 10.8 85 490-582 1-85 (86)
113 cd01684 Tet_like_IV EF-G_domai 99.5 3.2E-13 7E-18 129.3 10.6 113 676-840 1-115 (115)
114 cd01894 EngA1 EngA1 subfamily. 99.5 3.7E-13 8.1E-18 134.2 11.4 111 144-277 1-119 (157)
115 TIGR00436 era GTP-binding prot 99.4 1.2E-12 2.5E-17 144.4 15.9 111 142-276 2-120 (270)
116 PRK03003 GTP-binding protein D 99.4 7.2E-13 1.6E-17 157.2 14.1 116 139-277 210-336 (472)
117 cd01882 BMS1 Bms1. Bms1 is an 99.4 2.1E-12 4.6E-17 138.5 15.9 168 139-361 38-207 (225)
118 TIGR03598 GTPase_YsxC ribosome 99.4 3.2E-12 7E-17 131.9 15.9 150 137-332 15-177 (179)
119 COG0486 ThdF Predicted GTPase 99.4 5.4E-13 1.2E-17 151.4 9.4 159 88-277 172-338 (454)
120 PRK15494 era GTPase Era; Provi 99.4 2.7E-12 5.8E-17 145.8 15.0 115 139-276 51-173 (339)
121 cd01864 Rab19 Rab19 subfamily. 99.4 1.7E-12 3.7E-17 131.6 11.9 117 139-277 2-122 (165)
122 PRK00089 era GTPase Era; Revie 99.4 4.2E-12 9.1E-17 141.6 15.9 114 140-276 5-126 (292)
123 PRK09518 bifunctional cytidyla 99.4 3.6E-12 7.7E-17 158.3 16.4 117 137-276 272-396 (712)
124 PRK09518 bifunctional cytidyla 99.4 1.9E-12 4.1E-17 160.7 13.9 116 138-276 448-574 (712)
125 PRK03003 GTP-binding protein D 99.4 3.2E-12 6.8E-17 151.8 14.0 117 138-277 36-160 (472)
126 COG2229 Predicted GTPase [Gene 99.4 7.6E-12 1.6E-16 125.5 13.9 125 141-278 11-136 (187)
127 TIGR03594 GTPase_EngA ribosome 99.4 2.1E-12 4.5E-17 151.8 11.7 112 143-277 2-121 (429)
128 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.4 3.2E-12 6.9E-17 122.7 10.2 112 678-840 1-116 (116)
129 cd01879 FeoB Ferrous iron tran 99.4 3.3E-12 7.2E-17 127.8 10.7 107 145-277 1-115 (158)
130 cd03699 lepA_II lepA_II: This 99.3 5.1E-12 1.1E-16 114.6 10.4 81 490-582 1-85 (86)
131 KOG0463 GTP-binding protein GP 99.3 8.6E-12 1.9E-16 135.2 13.4 292 142-583 135-454 (641)
132 TIGR00231 small_GTP small GTP- 99.3 3.7E-12 8E-17 125.8 9.8 114 141-277 2-122 (161)
133 cd04114 Rab30 Rab30 subfamily. 99.3 7.5E-12 1.6E-16 127.1 12.1 118 137-276 4-125 (169)
134 cd00878 Arf_Arl Arf (ADP-ribos 99.3 5E-12 1.1E-16 127.0 10.7 109 142-277 1-114 (158)
135 PRK00093 GTP-binding protein D 99.3 6.4E-12 1.4E-16 147.9 12.6 113 141-276 2-122 (435)
136 cd04154 Arl2 Arl2 subfamily. 99.3 1.1E-11 2.5E-16 126.8 12.8 112 139-277 13-129 (173)
137 cd04124 RabL2 RabL2 subfamily. 99.3 1.2E-11 2.6E-16 125.3 12.3 113 142-276 2-117 (161)
138 cd04145 M_R_Ras_like M-Ras/R-R 99.3 1.4E-11 3E-16 124.2 12.1 113 142-277 4-121 (164)
139 cd04113 Rab4 Rab4 subfamily. 99.3 1.2E-11 2.6E-16 124.7 11.3 114 142-277 2-119 (161)
140 cd01898 Obg Obg subfamily. Th 99.3 1E-11 2.2E-16 126.1 10.8 112 142-277 2-128 (170)
141 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.9E-11 4.1E-16 124.8 12.7 117 139-277 1-123 (170)
142 cd04163 Era Era subfamily. Er 99.3 4.2E-11 9E-16 119.9 14.9 113 141-276 4-124 (168)
143 cd04164 trmE TrmE (MnmE, ThdF, 99.3 1.6E-11 3.4E-16 122.4 11.5 111 142-277 3-121 (157)
144 PRK05291 trmE tRNA modificatio 99.3 4.7E-12 1E-16 148.9 8.2 111 141-276 216-334 (449)
145 smart00175 RAB Rab subfamily o 99.3 2.6E-11 5.7E-16 122.1 12.0 114 142-277 2-119 (164)
146 cd04157 Arl6 Arl6 subfamily. 99.3 2E-11 4.4E-16 122.8 11.2 111 142-277 1-118 (162)
147 cd04105 SR_beta Signal recogni 99.3 4.9E-11 1.1E-15 125.9 14.1 115 141-278 1-124 (203)
148 PF02421 FeoB_N: Ferrous iron 99.3 8.9E-12 1.9E-16 125.0 8.0 110 142-277 2-119 (156)
149 cd04106 Rab23_lke Rab23-like s 99.3 3.9E-11 8.4E-16 120.8 12.3 116 142-277 2-120 (162)
150 cd01861 Rab6 Rab6 subfamily. 99.3 3.2E-11 6.9E-16 121.3 11.6 114 141-276 1-118 (161)
151 PRK15467 ethanolamine utilizat 99.3 2.4E-11 5.2E-16 123.1 10.7 99 141-276 2-104 (158)
152 cd01862 Rab7 Rab7 subfamily. 99.3 3.4E-11 7.5E-16 122.3 11.9 114 142-277 2-123 (172)
153 PRK04213 GTP-binding protein; 99.2 7.4E-11 1.6E-15 123.9 14.5 112 137-276 6-143 (201)
154 cd01866 Rab2 Rab2 subfamily. 99.2 4.1E-11 8.8E-16 122.2 11.8 114 141-276 5-122 (168)
155 PRK09554 feoB ferrous iron tra 99.2 4.9E-11 1.1E-15 147.8 14.9 110 141-276 4-125 (772)
156 cd01693 mtEFG2_like_IV mtEF-G2 99.2 4.7E-11 1E-15 115.3 11.6 116 676-840 1-120 (120)
157 cd01897 NOG NOG1 is a nucleola 99.2 4.1E-11 8.9E-16 121.5 11.8 112 141-276 1-126 (168)
158 PTZ00369 Ras-like protein; Pro 99.2 3.4E-11 7.3E-16 125.5 11.2 113 141-276 6-123 (189)
159 PRK00454 engB GTP-binding prot 99.2 1.1E-10 2.4E-15 121.6 15.0 148 137-332 21-181 (196)
160 TIGR00450 mnmE_trmE_thdF tRNA 99.2 6.2E-11 1.3E-15 138.9 14.2 112 141-276 204-323 (442)
161 cd04137 RheB Rheb (Ras Homolog 99.2 5.8E-11 1.3E-15 122.2 11.9 113 141-276 2-119 (180)
162 cd01878 HflX HflX subfamily. 99.2 3.1E-11 6.8E-16 127.1 10.0 117 138-277 39-167 (204)
163 cd00154 Rab Rab family. Rab G 99.2 7.7E-11 1.7E-15 117.0 12.1 113 142-276 2-118 (159)
164 smart00173 RAS Ras subfamily o 99.2 6.7E-11 1.4E-15 119.5 11.8 113 142-277 2-119 (164)
165 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 5.4E-11 1.2E-15 123.3 11.3 113 142-276 5-122 (183)
166 PF01926 MMR_HSR1: 50S ribosom 99.2 6.7E-11 1.4E-15 113.1 10.9 106 143-272 2-116 (116)
167 cd04138 H_N_K_Ras_like H-Ras/N 99.2 6.3E-11 1.4E-15 118.8 11.2 113 142-277 3-120 (162)
168 cd04151 Arl1 Arl1 subfamily. 99.2 5.3E-11 1.2E-15 119.8 10.6 109 142-277 1-114 (158)
169 cd04147 Ras_dva Ras-dva subfam 99.2 7.8E-11 1.7E-15 123.7 11.9 113 142-277 1-118 (198)
170 cd01867 Rab8_Rab10_Rab13_like 99.2 9.1E-11 2E-15 119.4 12.0 116 140-277 3-122 (167)
171 cd00879 Sar1 Sar1 subfamily. 99.2 5.7E-11 1.2E-15 123.4 10.6 119 131-276 10-133 (190)
172 cd04146 RERG_RasL11_like RERG/ 99.2 7.7E-11 1.7E-15 119.5 11.2 112 142-276 1-119 (165)
173 cd01893 Miro1 Miro1 subfamily. 99.2 9.8E-11 2.1E-15 119.1 11.9 112 142-277 2-117 (166)
174 cd04119 RJL RJL (RabJ-Like) su 99.2 1E-10 2.2E-15 118.0 11.9 113 142-276 2-123 (168)
175 cd04161 Arl2l1_Arl13_like Arl2 99.2 8.2E-11 1.8E-15 120.0 11.2 109 142-277 1-114 (167)
176 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 1.1E-10 2.3E-15 118.5 11.9 115 141-277 3-121 (166)
177 cd04142 RRP22 RRP22 subfamily. 99.2 1.8E-10 3.9E-15 121.2 13.7 114 142-277 2-130 (198)
178 cd01863 Rab18 Rab18 subfamily. 99.2 7.5E-11 1.6E-15 118.7 10.4 113 142-276 2-119 (161)
179 cd00877 Ran Ran (Ras-related n 99.2 1E-10 2.3E-15 119.2 11.5 113 142-276 2-117 (166)
180 smart00178 SAR Sar1p-like memb 99.2 1.1E-10 2.4E-15 121.2 11.7 117 133-276 10-131 (184)
181 cd04175 Rap1 Rap1 subgroup. T 99.2 1.9E-10 4.1E-15 116.4 12.7 113 142-277 3-120 (164)
182 cd04139 RalA_RalB RalA/RalB su 99.2 1.3E-10 2.7E-15 117.0 11.2 113 142-277 2-119 (164)
183 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 1.3E-10 2.8E-15 119.4 11.3 111 140-277 15-130 (174)
184 cd04136 Rap_like Rap-like subf 99.2 1.8E-10 3.8E-15 116.0 12.1 113 142-277 3-120 (163)
185 cd04122 Rab14 Rab14 subfamily. 99.2 1.6E-10 3.5E-15 117.3 11.7 115 141-277 3-121 (166)
186 cd00880 Era_like Era (E. coli 99.2 1.5E-10 3.3E-15 114.3 11.1 111 145-277 1-118 (163)
187 KOG1143 Predicted translation 99.2 2.3E-10 5.1E-15 124.3 13.3 147 142-304 169-334 (591)
188 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 2.3E-10 4.9E-15 120.4 12.9 114 142-276 2-123 (201)
189 COG1084 Predicted GTPase [Gene 99.2 3.9E-10 8.4E-15 122.7 14.8 131 124-278 152-295 (346)
190 cd04120 Rab12 Rab12 subfamily. 99.2 2.2E-10 4.8E-15 120.8 12.4 112 143-276 3-118 (202)
191 PLN03118 Rab family protein; P 99.2 2.6E-10 5.6E-15 121.0 12.9 114 141-277 15-134 (211)
192 cd04116 Rab9 Rab9 subfamily. 99.2 2.5E-10 5.4E-15 116.3 12.4 115 140-276 5-127 (170)
193 cd01860 Rab5_related Rab5-rela 99.2 1.8E-10 4E-15 116.1 11.3 113 142-276 3-119 (163)
194 TIGR02528 EutP ethanolamine ut 99.2 1E-10 2.2E-15 115.6 9.0 96 142-276 2-101 (142)
195 cd04123 Rab21 Rab21 subfamily. 99.2 2.2E-10 4.7E-15 114.9 11.6 113 142-276 2-118 (162)
196 cd04140 ARHI_like ARHI subfami 99.2 3E-10 6.5E-15 115.3 12.8 113 142-277 3-122 (165)
197 cd04110 Rab35 Rab35 subfamily. 99.1 2.4E-10 5.2E-15 120.2 12.3 116 139-276 5-123 (199)
198 cd04162 Arl9_Arfrp2_like Arl9/ 99.1 2.2E-10 4.8E-15 116.6 11.4 109 143-277 2-113 (164)
199 cd01868 Rab11_like Rab11-like. 99.1 2.6E-10 5.7E-15 115.4 11.8 115 141-277 4-122 (165)
200 cd04101 RabL4 RabL4 (Rab-like4 99.1 3.1E-10 6.6E-15 114.7 12.0 116 142-276 2-120 (164)
201 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 2.5E-10 5.4E-15 117.2 11.4 113 142-277 4-121 (172)
202 cd04177 RSR1 RSR1 subgroup. R 99.1 2.6E-10 5.5E-15 116.2 11.3 113 142-277 3-120 (168)
203 cd04144 Ras2 Ras2 subfamily. 99.1 3.4E-10 7.4E-15 118.0 12.0 111 143-276 2-119 (190)
204 cd04127 Rab27A Rab27a subfamil 99.1 3.9E-10 8.4E-15 115.9 12.2 119 140-277 4-134 (180)
205 cd01865 Rab3 Rab3 subfamily. 99.1 3.8E-10 8.2E-15 114.6 11.9 114 142-277 3-120 (165)
206 cd04176 Rap2 Rap2 subgroup. T 99.1 4.2E-10 9.1E-15 113.6 12.1 112 142-276 3-119 (163)
207 PRK12298 obgE GTPase CgtA; Rev 99.1 5.5E-10 1.2E-14 128.8 14.5 114 140-276 159-288 (390)
208 cd04159 Arl10_like Arl10-like 99.1 2.8E-10 6.1E-15 113.1 10.6 109 143-277 2-115 (159)
209 TIGR03156 GTP_HflX GTP-binding 99.1 1.3E-10 2.8E-15 132.4 9.0 116 138-276 187-314 (351)
210 cd00876 Ras Ras family. The R 99.1 4.3E-10 9.3E-15 112.5 11.6 113 142-277 1-118 (160)
211 cd04112 Rab26 Rab26 subfamily. 99.1 3.5E-10 7.5E-15 118.0 11.3 114 142-276 2-119 (191)
212 TIGR02729 Obg_CgtA Obg family 99.1 8.3E-10 1.8E-14 124.8 14.8 115 139-276 156-286 (329)
213 cd04155 Arl3 Arl3 subfamily. 99.1 3.7E-10 8E-15 115.2 10.6 113 138-277 12-129 (173)
214 cd04158 ARD1 ARD1 subfamily. 99.1 3.1E-10 6.6E-15 116.0 10.0 108 142-276 1-113 (169)
215 cd04135 Tc10 TC10 subfamily. 99.1 2.6E-10 5.6E-15 116.5 9.4 112 142-276 2-117 (174)
216 PLN03110 Rab GTPase; Provision 99.1 5.9E-10 1.3E-14 118.9 12.4 118 137-276 9-130 (216)
217 PRK12299 obgE GTPase CgtA; Rev 99.1 9.5E-10 2.1E-14 124.5 14.8 115 140-277 158-285 (335)
218 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 5.7E-10 1.2E-14 114.3 11.7 113 142-276 2-119 (170)
219 cd04156 ARLTS1 ARLTS1 subfamil 99.1 4.2E-10 9.1E-15 113.2 10.3 108 143-276 2-114 (160)
220 cd04149 Arf6 Arf6 subfamily. 99.1 4.9E-10 1.1E-14 114.5 10.8 109 141-276 10-123 (168)
221 COG0218 Predicted GTPase [Gene 99.1 1.6E-09 3.4E-14 111.4 14.1 114 139-277 23-149 (200)
222 cd00157 Rho Rho (Ras homology) 99.1 5E-10 1.1E-14 113.7 10.6 113 142-277 2-118 (171)
223 cd01881 Obg_like The Obg-like 99.1 4.1E-10 8.9E-15 114.7 10.0 109 145-277 1-134 (176)
224 smart00174 RHO Rho (Ras homolo 99.1 4.5E-10 9.8E-15 114.7 10.0 112 143-277 1-116 (174)
225 PLN03071 GTP-binding nuclear p 99.1 6.9E-10 1.5E-14 118.6 11.8 114 141-276 14-130 (219)
226 cd04132 Rho4_like Rho4-like su 99.1 7.8E-10 1.7E-14 114.6 11.8 113 142-276 2-118 (187)
227 cd01874 Cdc42 Cdc42 subfamily. 99.1 7.2E-10 1.6E-14 114.2 11.2 113 141-276 2-118 (175)
228 PRK11058 GTPase HflX; Provisio 99.1 5.2E-10 1.1E-14 130.4 11.3 115 139-276 196-322 (426)
229 cd04150 Arf1_5_like Arf1-Arf5- 99.1 8.7E-10 1.9E-14 111.6 11.2 108 142-276 2-114 (159)
230 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 1.9E-09 4E-14 113.2 13.3 114 141-277 1-130 (196)
231 cd04121 Rab40 Rab40 subfamily. 99.0 1.7E-09 3.7E-14 112.9 12.9 117 138-276 4-123 (189)
232 cd04109 Rab28 Rab28 subfamily. 99.0 1.3E-09 2.8E-14 116.1 12.1 114 142-276 2-122 (215)
233 smart00176 RAN Ran (Ras-relate 99.0 1E-09 2.3E-14 115.5 11.1 109 146-276 1-112 (200)
234 cd04118 Rab24 Rab24 subfamily. 99.0 1.4E-09 3.1E-14 113.3 11.9 114 142-276 2-118 (193)
235 cd00882 Ras_like_GTPase Ras-li 99.0 6.7E-10 1.4E-14 108.1 8.7 111 145-277 1-116 (157)
236 cd04134 Rho3 Rho3 subfamily. 99.0 8.6E-10 1.9E-14 114.9 10.1 114 141-277 1-118 (189)
237 cd01850 CDC_Septin CDC/Septin. 99.0 3E-09 6.5E-14 117.6 14.6 123 142-277 6-157 (276)
238 PF09439 SRPRB: Signal recogni 99.0 1.5E-09 3.2E-14 111.5 11.2 112 141-278 4-127 (181)
239 KOG0052 Translation elongation 99.0 1.1E-10 2.4E-15 129.9 2.8 132 138-277 5-156 (391)
240 PRK12296 obgE GTPase CgtA; Rev 99.0 3.6E-09 7.9E-14 124.3 15.4 113 140-276 159-297 (500)
241 PLN00223 ADP-ribosylation fact 99.0 1.5E-09 3.3E-14 112.4 11.0 110 141-277 18-132 (181)
242 PRK12297 obgE GTPase CgtA; Rev 99.0 2.7E-09 5.8E-14 123.9 14.1 114 140-276 158-287 (424)
243 cd04131 Rnd Rnd subfamily. Th 99.0 1.5E-09 3.3E-14 112.2 10.8 112 142-276 3-118 (178)
244 cd04125 RabA_like RabA-like su 99.0 2.3E-09 5E-14 111.4 12.3 113 142-276 2-118 (188)
245 PLN03108 Rab family protein; P 99.0 2.2E-09 4.8E-14 113.9 12.3 117 139-277 5-125 (210)
246 cd04126 Rab20 Rab20 subfamily. 99.0 2E-09 4.3E-14 115.0 11.8 109 142-277 2-114 (220)
247 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 2.1E-09 4.4E-14 111.6 11.7 114 140-276 5-122 (182)
248 smart00177 ARF ARF-like small 99.0 2.1E-09 4.6E-14 110.6 11.6 109 141-276 14-127 (175)
249 cd04111 Rab39 Rab39 subfamily. 99.0 1.7E-09 3.7E-14 114.9 11.2 116 141-277 3-123 (211)
250 cd04133 Rop_like Rop subfamily 99.0 1.9E-09 4.1E-14 111.3 10.9 112 142-276 3-118 (176)
251 cd04143 Rhes_like Rhes_like su 99.0 2E-09 4.4E-14 117.1 11.7 112 142-276 2-126 (247)
252 cd01875 RhoG RhoG subfamily. 99.0 2.3E-09 4.9E-14 112.0 11.5 112 142-276 5-120 (191)
253 cd01870 RhoA_like RhoA-like su 99.0 1.5E-09 3.3E-14 110.9 10.0 113 141-276 2-118 (175)
254 cd01871 Rac1_like Rac1-like su 99.0 2.2E-09 4.8E-14 110.4 11.2 112 142-276 3-118 (174)
255 cd01876 YihA_EngB The YihA (En 99.0 4.5E-09 9.7E-14 105.5 13.0 110 143-277 2-124 (170)
256 KOG0084 GTPase Rab1/YPT1, smal 99.0 2.7E-09 5.8E-14 108.2 11.1 117 139-277 8-128 (205)
257 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 2.6E-09 5.7E-14 114.2 11.8 112 142-276 3-118 (222)
258 cd04102 RabL3 RabL3 (Rab-like3 99.0 4E-09 8.6E-14 111.2 12.8 118 142-276 2-142 (202)
259 KOG1423 Ras-like GTPase ERA [C 99.0 1.8E-09 3.8E-14 115.8 10.0 116 138-276 70-198 (379)
260 PTZ00133 ADP-ribosylation fact 99.0 2E-09 4.2E-14 111.7 10.3 109 141-276 18-131 (182)
261 PF08477 Miro: Miro-like prote 99.0 7.1E-10 1.5E-14 106.0 6.2 113 142-274 1-119 (119)
262 cd01892 Miro2 Miro2 subfamily. 99.0 2.6E-09 5.6E-14 109.3 10.4 117 139-276 3-121 (169)
263 cd04130 Wrch_1 Wrch-1 subfamil 99.0 2.7E-09 5.8E-14 109.3 10.0 112 142-276 2-117 (173)
264 COG2262 HflX GTPases [General 98.9 1.7E-09 3.7E-14 121.2 9.1 118 137-277 189-318 (411)
265 PTZ00132 GTP-binding nuclear p 98.9 7.8E-09 1.7E-13 110.0 13.0 114 141-276 10-126 (215)
266 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 6E-09 1.3E-13 112.1 12.1 112 142-276 15-130 (232)
267 TIGR00437 feoB ferrous iron tr 98.9 4.8E-09 1E-13 127.3 12.7 104 147-276 1-112 (591)
268 KOG1191 Mitochondrial GTPase [ 98.9 4.5E-09 9.7E-14 119.4 11.4 113 141-276 269-402 (531)
269 cd04117 Rab15 Rab15 subfamily. 98.9 7.7E-09 1.7E-13 104.7 12.2 113 142-276 2-118 (161)
270 cd04128 Spg1 Spg1p. Spg1p (se 98.9 5.3E-09 1.1E-13 108.5 11.1 112 142-276 2-117 (182)
271 PLN00023 GTP-binding protein; 98.9 8.3E-09 1.8E-13 114.6 12.5 120 140-276 21-164 (334)
272 cd01896 DRG The developmentall 98.9 1.4E-08 3.1E-13 109.5 14.0 81 142-246 2-89 (233)
273 cd04104 p47_IIGP_like p47 (47- 98.9 1.3E-08 2.8E-13 107.0 11.7 114 142-277 3-121 (197)
274 PRK09866 hypothetical protein; 98.9 3E-08 6.5E-13 117.0 15.2 67 210-276 229-302 (741)
275 cd04148 RGK RGK subfamily. Th 98.8 2.3E-08 4.9E-13 107.1 12.3 112 142-277 2-120 (221)
276 PF00025 Arf: ADP-ribosylation 98.8 3.2E-08 7E-13 102.0 11.4 113 138-277 12-129 (175)
277 PF10662 PduV-EutP: Ethanolami 98.8 4E-08 8.6E-13 96.9 10.9 97 141-276 2-102 (143)
278 PF00071 Ras: Ras family; Int 98.8 6.6E-08 1.4E-12 97.4 12.9 114 142-277 1-118 (162)
279 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.8 5E-08 1.1E-12 98.7 11.7 119 137-277 19-142 (221)
280 COG3596 Predicted GTPase [Gene 98.8 7.5E-08 1.6E-12 102.9 13.6 159 138-334 37-211 (296)
281 COG1163 DRG Predicted GTPase [ 98.8 2.7E-08 5.9E-13 108.0 10.5 84 140-247 63-153 (365)
282 KOG0078 GTP-binding protein SE 98.8 6E-08 1.3E-12 99.9 12.1 119 137-277 9-131 (207)
283 cd01853 Toc34_like Toc34-like 98.7 3.5E-07 7.7E-12 99.5 18.1 122 133-277 24-163 (249)
284 cd04129 Rho2 Rho2 subfamily. 98.7 4.7E-08 1E-12 101.7 10.3 112 142-276 3-118 (187)
285 PF03144 GTP_EFTU_D2: Elongati 98.7 1.3E-08 2.8E-13 89.4 5.1 73 506-582 2-74 (74)
286 COG1100 GTPase SAR1 and relate 98.7 6.7E-08 1.5E-12 102.6 11.6 115 141-277 6-125 (219)
287 KOG0080 GTPase Rab18, small G 98.7 3.9E-08 8.5E-13 96.0 8.3 114 140-277 11-131 (209)
288 KOG1489 Predicted GTP-binding 98.7 8.3E-08 1.8E-12 103.9 11.3 114 139-276 195-325 (366)
289 smart00053 DYNc Dynamin, GTPas 98.7 1.7E-07 3.8E-12 101.0 13.5 67 211-277 125-206 (240)
290 KOG0394 Ras-related GTPase [Ge 98.7 2.6E-08 5.6E-13 99.8 6.5 116 140-277 9-132 (210)
291 cd04103 Centaurin_gamma Centau 98.7 1.2E-07 2.6E-12 96.0 11.4 106 142-276 2-112 (158)
292 cd01873 RhoBTB RhoBTB subfamil 98.7 1.1E-07 2.5E-12 99.7 10.8 68 207-276 62-133 (195)
293 KOG0098 GTPase Rab2, small G p 98.6 1.5E-07 3.2E-12 94.6 10.3 115 141-277 7-125 (216)
294 PF00350 Dynamin_N: Dynamin fa 98.6 1.9E-07 4.2E-12 94.9 10.1 63 211-273 101-168 (168)
295 KOG0095 GTPase Rab30, small G 98.6 4.6E-07 9.9E-12 87.4 11.0 114 140-277 7-126 (213)
296 KOG0092 GTPase Rab5/YPT51 and 98.6 1.5E-07 3.3E-12 95.3 7.9 114 142-277 7-124 (200)
297 TIGR02836 spore_IV_A stage IV 98.5 6.1E-07 1.3E-11 101.3 11.6 133 141-276 18-193 (492)
298 KOG0395 Ras-related GTPase [Ge 98.5 3.9E-07 8.4E-12 95.6 9.0 115 140-277 3-122 (196)
299 COG0370 FeoB Fe2+ transport sy 98.5 5.8E-07 1.3E-11 107.0 11.3 109 142-276 5-121 (653)
300 KOG0073 GTP-binding ADP-ribosy 98.5 9.7E-07 2.1E-11 87.1 11.0 108 143-277 19-131 (185)
301 KOG0079 GTP-binding protein H- 98.5 9.2E-07 2E-11 85.4 10.3 113 143-277 11-126 (198)
302 KOG0087 GTPase Rab11/YPT3, sma 98.5 4.9E-07 1.1E-11 92.9 8.6 115 141-277 15-133 (222)
303 KOG0090 Signal recognition par 98.4 1E-06 2.2E-11 90.8 9.9 112 141-279 39-161 (238)
304 KOG0093 GTPase Rab3, small G p 98.4 2.2E-06 4.7E-11 82.9 11.2 114 142-277 23-140 (193)
305 COG5192 BMS1 GTP-binding prote 98.4 1.3E-06 2.9E-11 99.5 11.0 106 142-277 71-177 (1077)
306 PRK09435 membrane ATPase/prote 98.4 2E-06 4.3E-11 97.0 12.5 172 137-331 53-246 (332)
307 TIGR00991 3a0901s02IAP34 GTP-b 98.4 4.3E-06 9.2E-11 92.7 14.6 115 139-276 37-166 (313)
308 KOG0086 GTPase Rab4, small G p 98.3 1.7E-06 3.7E-11 83.9 8.8 113 142-276 11-127 (214)
309 TIGR00073 hypB hydrogenase acc 98.3 1.2E-06 2.6E-11 92.9 8.1 133 137-277 19-162 (207)
310 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 5.4E-06 1.2E-10 89.0 12.4 114 142-277 1-125 (232)
311 PRK13768 GTPase; Provisional 98.2 3.2E-06 6.9E-11 92.5 9.3 67 211-277 97-176 (253)
312 KOG0075 GTP-binding ADP-ribosy 98.2 1.3E-06 2.8E-11 84.5 5.0 109 143-277 23-136 (186)
313 cd01342 Translation_Factor_II_ 98.2 1E-05 2.2E-10 71.0 9.5 71 491-573 2-72 (83)
314 PF00735 Septin: Septin; Inte 98.2 2E-05 4.4E-10 87.3 13.7 140 142-304 6-173 (281)
315 COG0536 Obg Predicted GTPase [ 98.1 1.5E-05 3.2E-10 87.9 11.9 115 140-277 159-289 (369)
316 KOG1532 GTPase XAB1, interacts 98.1 3.7E-06 8.1E-11 89.3 6.9 89 209-297 114-215 (366)
317 PF03029 ATP_bind_1: Conserved 98.1 6.5E-06 1.4E-10 89.1 7.5 66 212-277 92-170 (238)
318 PTZ00099 rab6; Provisional 98.1 9.3E-06 2E-10 83.9 8.2 69 208-276 26-98 (176)
319 KOG0088 GTPase Rab21, small G 98.1 1.3E-06 2.9E-11 85.2 1.3 114 141-276 14-131 (218)
320 TIGR00750 lao LAO/AO transport 98.0 4.3E-05 9.3E-10 85.8 13.3 62 209-277 125-186 (300)
321 PTZ00258 GTP-binding protein; 98.0 1.3E-05 2.8E-10 92.2 9.1 90 137-245 18-126 (390)
322 PF04548 AIG1: AIG1 family; I 98.0 3.7E-05 8.1E-10 81.8 11.8 113 142-277 2-130 (212)
323 KOG0070 GTP-binding ADP-ribosy 98.0 8.4E-06 1.8E-10 82.6 6.0 110 141-277 18-132 (181)
324 KOG1490 GTP-binding protein CR 98.0 1.8E-05 3.8E-10 90.5 9.1 127 129-279 157-297 (620)
325 KOG2486 Predicted GTPase [Gene 98.0 3.4E-05 7.3E-10 82.7 10.5 112 141-276 137-261 (320)
326 KOG0076 GTP-binding ADP-ribosy 98.0 2E-05 4.3E-10 78.8 7.6 116 142-277 19-140 (197)
327 PF05049 IIGP: Interferon-indu 97.9 2.6E-05 5.6E-10 88.8 9.0 115 141-277 36-155 (376)
328 cd01900 YchF YchF subfamily. 97.9 2.4E-05 5.1E-10 86.2 8.0 85 143-246 1-104 (274)
329 KOG4252 GTP-binding protein [S 97.9 6.2E-06 1.3E-10 82.2 3.1 117 138-276 18-137 (246)
330 COG5019 CDC3 Septin family pro 97.9 0.00017 3.7E-09 80.5 14.5 142 140-304 23-193 (373)
331 cd03698 eRF3_II_like eRF3_II_l 97.9 8E-05 1.7E-09 67.1 9.7 79 489-582 1-82 (83)
332 PRK09601 GTP-binding protein Y 97.8 5.3E-05 1.1E-09 86.2 9.0 86 142-246 4-108 (364)
333 KOG0074 GTP-binding ADP-ribosy 97.8 6.8E-05 1.5E-09 72.3 8.2 111 141-277 18-133 (185)
334 KOG0081 GTPase Rab27, small G 97.8 3.4E-05 7.3E-10 75.6 6.2 68 210-277 66-138 (219)
335 cd01899 Ygr210 Ygr210 subfamil 97.8 9.2E-05 2E-09 83.5 9.9 37 210-246 68-111 (318)
336 KOG3883 Ras family small GTPas 97.8 0.00017 3.6E-09 70.6 10.1 117 140-276 9-131 (198)
337 PRK14722 flhF flagellar biosyn 97.8 4.1E-05 8.9E-10 87.6 6.8 134 140-276 137-294 (374)
338 KOG0077 Vesicle coat complex C 97.8 7.6E-05 1.7E-09 74.1 7.7 112 140-278 20-136 (193)
339 TIGR00993 3a0901s04IAP86 chlor 97.7 0.00021 4.5E-09 85.6 12.1 115 140-277 118-250 (763)
340 cd03115 SRP The signal recogni 97.7 8.7E-05 1.9E-09 76.2 7.9 67 209-277 81-153 (173)
341 cd03114 ArgK-like The function 97.7 0.00014 3E-09 73.1 9.0 59 209-274 90-148 (148)
342 PRK09602 translation-associate 97.7 0.00016 3.4E-09 84.1 10.3 37 211-247 72-115 (396)
343 KOG0096 GTPase Ran/TC4/GSP1 (n 97.7 9.9E-05 2.1E-09 74.9 7.2 116 139-276 9-127 (216)
344 KOG0071 GTP-binding ADP-ribosy 97.7 0.00037 7.9E-09 67.4 10.7 109 143-278 20-133 (180)
345 TIGR00101 ureG urease accessor 97.7 0.00012 2.5E-09 77.3 8.1 59 210-277 91-151 (199)
346 cd03110 Fer4_NifH_child This p 97.7 0.00051 1.1E-08 70.8 12.8 66 209-276 91-156 (179)
347 KOG1547 Septin CDC10 and relat 97.7 0.00066 1.4E-08 71.3 13.1 128 138-279 44-200 (336)
348 KOG1707 Predicted Ras related/ 97.6 0.00017 3.6E-09 84.3 8.7 118 137-279 7-131 (625)
349 TIGR01425 SRP54_euk signal rec 97.6 0.00015 3.2E-09 84.4 7.9 66 209-276 181-252 (429)
350 KOG0448 Mitofusin 1 GTPase, in 97.6 0.00067 1.5E-08 80.7 13.0 142 138-279 107-277 (749)
351 cd03112 CobW_like The function 97.6 0.00046 1E-08 70.0 10.4 125 142-275 2-158 (158)
352 COG0523 Putative GTPases (G3E 97.5 0.00042 9E-09 78.1 10.8 132 140-277 1-159 (323)
353 TIGR00064 ftsY signal recognit 97.5 0.00012 2.5E-09 81.0 6.3 132 138-276 70-230 (272)
354 KOG0097 GTPase Rab14, small G 97.5 0.00041 8.9E-09 66.6 8.8 116 140-277 11-130 (215)
355 PF03308 ArgK: ArgK protein; 97.5 0.00015 3.2E-09 78.1 6.5 145 127-278 16-182 (266)
356 KOG2655 Septin family protein 97.5 0.00047 1E-08 77.7 10.5 140 141-304 22-189 (366)
357 KOG1954 Endocytosis/signaling 97.5 0.00036 7.9E-09 77.2 8.7 134 142-277 60-225 (532)
358 cd03693 EF1_alpha_II EF1_alpha 97.5 0.00073 1.6E-08 62.0 9.4 83 487-583 2-87 (91)
359 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.0005 1.1E-08 68.2 8.8 51 226-276 3-55 (141)
360 PRK10416 signal recognition pa 97.4 0.0003 6.4E-09 79.5 8.0 128 139-276 113-272 (318)
361 cd01851 GBP Guanylate-binding 97.4 0.00047 1E-08 74.1 9.1 91 138-246 5-103 (224)
362 PRK10463 hydrogenase nickel in 97.4 0.00018 4E-09 79.4 5.8 129 138-276 102-243 (290)
363 PF03193 DUF258: Protein of un 97.4 0.00014 3E-09 73.6 4.4 34 126-163 25-58 (161)
364 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00017 3.7E-09 72.9 5.0 26 140-165 102-127 (157)
365 KOG0410 Predicted GTP binding 97.4 0.00047 1E-08 75.4 8.5 117 138-277 176-308 (410)
366 COG4917 EutP Ethanolamine util 97.4 0.00028 6.1E-09 67.1 5.9 97 142-276 3-103 (148)
367 KOG0091 GTPase Rab39, small G 97.4 0.00088 1.9E-08 66.4 8.9 114 143-277 11-130 (213)
368 KOG0083 GTPase Rab26/Rab37, sm 97.3 0.00021 4.5E-09 68.1 3.9 70 207-276 43-116 (192)
369 cd02038 FleN-like FleN is a me 97.2 0.003 6.5E-08 62.6 11.6 64 211-276 45-110 (139)
370 cd03688 eIF2_gamma_II eIF2_gam 97.2 0.003 6.4E-08 59.4 10.4 96 487-583 3-106 (113)
371 cd04089 eRF3_II eRF3_II: domai 97.2 0.0024 5.2E-08 57.4 9.5 65 489-569 1-65 (82)
372 cd01858 NGP_1 NGP-1. Autoanti 97.2 0.00076 1.6E-08 68.1 6.8 49 228-276 2-52 (157)
373 PF00448 SRP54: SRP54-type pro 97.2 0.00042 9.1E-09 72.9 5.0 66 209-276 82-153 (196)
374 PRK00771 signal recognition pa 97.2 0.00075 1.6E-08 79.2 7.5 62 210-276 175-245 (437)
375 KOG0393 Ras-related small GTPa 97.2 0.00039 8.5E-09 72.3 4.6 114 141-276 5-122 (198)
376 PRK14974 cell division protein 97.2 0.00067 1.4E-08 77.0 6.7 63 209-276 221-292 (336)
377 PRK12727 flagellar biosynthesi 97.1 0.0012 2.6E-08 78.2 8.0 132 140-276 350-497 (559)
378 COG1703 ArgK Putative periplas 97.1 0.0026 5.5E-08 69.6 9.8 147 126-279 37-205 (323)
379 PRK11537 putative GTP-binding 97.1 0.0035 7.5E-08 70.9 11.4 131 139-277 3-164 (318)
380 cd01849 YlqF_related_GTPase Yl 97.1 0.00074 1.6E-08 68.1 5.5 26 139-164 99-124 (155)
381 TIGR02475 CobW cobalamin biosy 97.1 0.0037 8.1E-08 71.4 11.7 109 139-248 3-137 (341)
382 cd02036 MinD Bacterial cell di 97.1 0.0052 1.1E-07 62.9 11.7 63 212-276 64-127 (179)
383 KOG1673 Ras GTPases [General f 97.0 0.0014 3E-08 64.5 6.5 134 142-304 22-158 (205)
384 PRK12288 GTPase RsgA; Reviewed 97.0 0.00079 1.7E-08 76.9 5.6 23 142-164 207-229 (347)
385 cd01855 YqeH YqeH. YqeH is an 97.0 0.001 2.2E-08 69.3 5.9 24 141-164 128-151 (190)
386 COG0378 HypB Ni2+-binding GTPa 97.0 0.00082 1.8E-08 69.3 4.7 127 140-276 13-155 (202)
387 cd04178 Nucleostemin_like Nucl 96.9 0.0015 3.2E-08 67.3 6.5 24 141-164 118-141 (172)
388 PRK10867 signal recognition pa 96.9 0.0025 5.3E-08 74.8 8.8 63 209-276 182-253 (433)
389 TIGR03597 GTPase_YqeH ribosome 96.9 0.00076 1.6E-08 77.7 4.5 24 141-164 155-178 (360)
390 cd01857 HSR1_MMR1 HSR1/MMR1. 96.9 0.0016 3.5E-08 64.6 6.1 23 142-164 85-107 (141)
391 cd02042 ParA ParA and ParB of 96.8 0.0048 1E-07 57.5 8.5 82 143-257 2-84 (104)
392 PF02492 cobW: CobW/HypB/UreG, 96.8 0.0024 5.2E-08 66.1 6.9 127 142-277 2-155 (178)
393 PRK08099 bifunctional DNA-bind 96.8 0.0033 7.2E-08 73.2 8.6 31 137-167 216-246 (399)
394 TIGR00157 ribosome small subun 96.8 0.0013 2.8E-08 71.7 4.7 23 141-163 121-143 (245)
395 PRK11889 flhF flagellar biosyn 96.7 0.0023 4.9E-08 73.3 6.3 131 139-276 240-390 (436)
396 KOG1486 GTP-binding protein DR 96.7 0.0027 5.7E-08 67.3 6.1 81 143-247 65-152 (364)
397 TIGR00959 ffh signal recogniti 96.7 0.0023 5.1E-08 74.9 6.2 65 209-276 181-252 (428)
398 COG1162 Predicted GTPases [Gen 96.7 0.0015 3.2E-08 72.2 4.2 21 142-162 166-186 (301)
399 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0031 6.6E-08 70.5 6.6 24 141-164 162-185 (287)
400 TIGR00092 GTP-binding protein 96.7 0.0067 1.5E-07 69.4 9.4 95 141-246 3-109 (368)
401 PRK12289 GTPase RsgA; Reviewed 96.6 0.0019 4E-08 74.0 4.9 23 142-164 174-196 (352)
402 TIGR03596 GTPase_YlqF ribosome 96.6 0.0036 7.8E-08 69.5 7.0 24 140-163 118-141 (276)
403 cd01859 MJ1464 MJ1464. This f 96.6 0.0057 1.2E-07 61.5 7.8 33 130-162 91-123 (156)
404 cd03696 selB_II selB_II: this 96.6 0.011 2.4E-07 53.1 8.9 63 493-569 4-66 (83)
405 cd01859 MJ1464 MJ1464. This f 96.6 0.0036 7.9E-08 63.0 6.3 51 226-276 4-54 (156)
406 cd01856 YlqF YlqF. Proteins o 96.6 0.0046 9.9E-08 63.4 7.0 25 139-163 114-138 (171)
407 cd03111 CpaE_like This protein 96.6 0.011 2.3E-07 55.8 9.0 59 212-272 44-106 (106)
408 COG1161 Predicted GTPases [Gen 96.6 0.0033 7.1E-08 71.3 6.4 27 141-167 133-159 (322)
409 PRK12726 flagellar biosynthesi 96.6 0.0037 7.9E-08 71.4 6.4 25 139-163 205-229 (407)
410 COG0012 Predicted GTPase, prob 96.5 0.0039 8.5E-08 70.4 6.4 94 142-246 4-109 (372)
411 KOG0072 GTP-binding ADP-ribosy 96.5 0.0031 6.7E-08 61.4 4.6 121 129-277 8-133 (182)
412 KOG3886 GTP-binding protein [S 96.5 0.0067 1.4E-07 63.8 7.4 118 140-279 4-132 (295)
413 KOG2743 Cobalamin synthesis pr 96.5 0.0059 1.3E-07 66.3 7.2 155 138-303 55-244 (391)
414 cd03695 CysN_NodQ_II CysN_NodQ 96.5 0.015 3.3E-07 52.1 8.6 50 506-568 16-65 (81)
415 PRK09563 rbgA GTPase YlqF; Rev 96.5 0.0057 1.2E-07 68.3 7.1 24 140-163 121-144 (287)
416 cd02037 MRP-like MRP (Multiple 96.4 0.0037 8.1E-08 63.9 5.0 66 209-276 66-134 (169)
417 PRK13796 GTPase YqeH; Provisio 96.4 0.0046 1E-07 71.4 6.2 39 125-163 145-183 (365)
418 cd03697 EFTU_II EFTU_II: Elong 96.4 0.013 2.8E-07 53.3 7.8 64 494-569 5-68 (87)
419 cd01849 YlqF_related_GTPase Yl 96.4 0.0081 1.8E-07 60.5 7.0 41 236-276 1-42 (155)
420 KOG0467 Translation elongation 96.3 6.6E-06 1.4E-10 97.8 -17.7 195 135-340 175-378 (887)
421 cd00066 G-alpha G protein alph 96.3 0.007 1.5E-07 68.6 7.0 79 193-276 148-241 (317)
422 cd01855 YqeH YqeH. YqeH is an 96.3 0.011 2.4E-07 61.6 7.5 57 219-277 19-75 (190)
423 TIGR03596 GTPase_YlqF ribosome 96.2 0.0061 1.3E-07 67.7 5.6 56 219-276 5-61 (276)
424 PRK14721 flhF flagellar biosyn 96.2 0.0068 1.5E-07 70.7 6.0 135 140-276 191-339 (420)
425 cd03694 GTPBP_II Domain II of 96.2 0.038 8.3E-07 50.2 9.6 65 494-568 5-69 (87)
426 cd01856 YlqF YlqF. Proteins o 96.2 0.0067 1.5E-07 62.2 5.2 57 218-276 2-59 (171)
427 smart00275 G_alpha G protein a 96.1 0.013 2.9E-07 67.0 7.6 80 193-277 171-265 (342)
428 PRK05703 flhF flagellar biosyn 96.1 0.016 3.4E-07 68.2 8.4 66 209-276 298-370 (424)
429 PRK12724 flagellar biosynthesi 96.1 0.0091 2E-07 69.3 6.2 66 209-276 298-372 (432)
430 PRK06731 flhF flagellar biosyn 96.1 0.014 3E-07 64.5 7.3 63 210-276 154-224 (270)
431 KOG1491 Predicted GTP-binding 96.0 0.021 4.6E-07 63.3 8.1 95 133-246 13-126 (391)
432 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.038 8.3E-07 49.7 8.7 77 143-255 2-79 (99)
433 cd03692 mtIF2_IVc mtIF2_IVc: t 95.9 0.047 1E-06 49.3 9.0 65 494-569 5-69 (84)
434 PRK00098 GTPase RsgA; Reviewed 95.9 0.0092 2E-07 67.0 5.3 23 141-163 165-187 (298)
435 cd02032 Bchl_like This family 95.9 0.022 4.7E-07 62.8 8.2 65 210-275 115-184 (267)
436 PRK12723 flagellar biosynthesi 95.9 0.016 3.6E-07 67.1 7.4 133 140-276 174-325 (388)
437 TIGR03348 VI_IcmF type VI secr 95.8 0.015 3.2E-07 76.9 7.3 64 213-276 163-256 (1169)
438 PRK13695 putative NTPase; Prov 95.8 0.029 6.3E-07 57.6 8.0 40 232-273 94-136 (174)
439 KOG1534 Putative transcription 95.7 0.021 4.5E-07 59.4 6.3 66 211-276 98-177 (273)
440 KOG1424 Predicted GTP-binding 95.7 0.0079 1.7E-07 69.9 3.7 77 140-243 314-390 (562)
441 PRK09563 rbgA GTPase YlqF; Rev 95.6 0.014 3E-07 65.3 4.9 57 218-276 7-64 (287)
442 PRK13185 chlL protochlorophyll 95.6 0.031 6.8E-07 61.6 7.6 65 209-274 116-185 (270)
443 KOG2485 Conserved ATP/GTP bind 95.5 0.022 4.7E-07 62.7 6.1 65 139-221 142-206 (335)
444 KOG1533 Predicted GTPase [Gene 95.4 0.034 7.4E-07 58.8 6.8 74 210-283 96-183 (290)
445 cd02117 NifH_like This family 95.4 0.028 6.1E-07 59.7 6.6 67 209-276 115-188 (212)
446 PRK06995 flhF flagellar biosyn 95.4 0.025 5.4E-07 67.2 6.6 22 141-162 257-278 (484)
447 TIGR00257 IMPACT_YIGZ uncharac 95.4 0.12 2.6E-06 54.6 10.9 112 797-914 89-200 (204)
448 PRK14723 flhF flagellar biosyn 95.4 0.018 3.9E-07 71.5 5.5 22 141-162 186-207 (767)
449 COG1419 FlhF Flagellar GTP-bin 95.3 0.025 5.3E-07 64.9 5.7 133 139-276 202-351 (407)
450 CHL00072 chlL photochlorophyll 95.2 0.054 1.2E-06 60.6 7.9 65 210-275 115-184 (290)
451 PRK11568 hypothetical protein; 95.1 0.18 3.8E-06 53.3 11.1 112 797-914 89-200 (204)
452 cd02040 NifH NifH gene encodes 94.9 0.067 1.4E-06 58.8 7.7 63 209-271 115-182 (270)
453 TIGR03597 GTPase_YqeH ribosome 94.9 0.069 1.5E-06 61.7 8.0 54 222-277 51-104 (360)
454 cd04178 Nucleostemin_like Nucl 94.7 0.036 7.7E-07 57.2 4.6 41 236-276 1-43 (172)
455 TIGR01281 DPOR_bchL light-inde 94.6 0.081 1.8E-06 58.3 7.3 66 209-275 114-184 (268)
456 PRK12289 GTPase RsgA; Reviewed 94.5 0.088 1.9E-06 60.4 7.6 46 231-276 86-133 (352)
457 COG0541 Ffh Signal recognition 94.3 0.21 4.6E-06 57.7 9.9 65 209-276 181-252 (451)
458 PRK00098 GTPase RsgA; Reviewed 94.3 0.085 1.9E-06 59.3 6.8 46 231-276 77-124 (298)
459 KOG3887 Predicted small GTPase 94.3 0.097 2.1E-06 55.5 6.5 118 143-283 30-155 (347)
460 TIGR00157 ribosome small subun 94.2 0.067 1.4E-06 58.4 5.5 47 230-276 32-80 (245)
461 PF05621 TniB: Bacterial TniB 94.0 0.32 7E-06 54.1 10.2 37 127-163 46-84 (302)
462 COG3523 IcmF Type VI protein s 93.9 0.098 2.1E-06 67.7 6.8 64 213-276 176-269 (1188)
463 PF09547 Spore_IV_A: Stage IV 93.8 0.34 7.3E-06 55.9 10.2 130 142-276 19-193 (492)
464 PRK13230 nitrogenase reductase 93.8 0.098 2.1E-06 58.1 5.9 63 210-272 116-183 (279)
465 KOG0447 Dynamin-like GTP bindi 93.8 0.45 9.8E-06 55.7 11.1 139 138-280 306-496 (980)
466 PRK13232 nifH nitrogenase redu 93.7 0.16 3.5E-06 56.2 7.4 66 209-274 115-185 (273)
467 PF13555 AAA_29: P-loop contai 93.6 0.069 1.5E-06 45.3 3.2 21 142-162 25-45 (62)
468 COG1618 Predicted nucleotide k 93.5 0.91 2E-05 45.9 11.4 48 227-276 93-143 (179)
469 PF06858 NOG1: Nucleolar GTP-b 93.5 0.19 4.1E-06 41.8 5.6 47 228-274 6-58 (58)
470 TIGR01287 nifH nitrogenase iro 93.2 0.27 5.8E-06 54.4 8.2 64 209-272 114-183 (275)
471 PF02263 GBP: Guanylate-bindin 93.1 0.22 4.7E-06 54.9 7.2 80 126-223 7-86 (260)
472 TIGR01007 eps_fam capsular exo 93.0 0.25 5.3E-06 52.1 7.3 68 209-277 126-194 (204)
473 smart00010 small_GTPase Small 92.9 0.17 3.6E-06 48.0 5.3 20 142-161 2-21 (124)
474 cd03702 IF2_mtIF2_II This fami 92.9 0.5 1.1E-05 43.8 8.1 63 505-581 15-77 (95)
475 COG0552 FtsY Signal recognitio 92.9 0.53 1.1E-05 52.9 9.7 128 138-275 137-296 (340)
476 PRK01889 GTPase RsgA; Reviewed 92.7 0.11 2.4E-06 59.9 4.3 25 141-165 196-220 (356)
477 KOG2484 GTPase [General functi 92.7 0.11 2.4E-06 59.0 4.1 59 137-222 250-308 (435)
478 KOG1487 GTP-binding protein DR 92.7 0.12 2.5E-06 55.6 4.0 115 142-282 61-188 (358)
479 TIGR01969 minD_arch cell divis 92.6 0.3 6.4E-06 52.9 7.3 66 209-276 107-173 (251)
480 KOG2423 Nucleolar GTPase [Gene 92.5 0.095 2.1E-06 59.1 3.3 68 128-222 296-363 (572)
481 COG0563 Adk Adenylate kinase a 92.3 0.11 2.5E-06 53.8 3.3 106 142-270 2-111 (178)
482 PRK13796 GTPase YqeH; Provisio 92.0 0.42 9.2E-06 55.3 8.0 51 223-276 58-109 (365)
483 PRK13849 putative crown gall t 92.0 0.31 6.8E-06 52.7 6.5 64 209-274 82-151 (231)
484 PRK05800 cobU adenosylcobinami 92.0 0.4 8.7E-06 49.3 7.0 139 142-306 3-155 (170)
485 COG0455 flhG Antiactivator of 91.9 1.3 2.9E-05 48.7 11.4 63 210-274 112-177 (262)
486 PF13207 AAA_17: AAA domain; P 91.8 0.14 3.1E-06 48.8 3.3 23 143-165 2-24 (121)
487 KOG0082 G-protein alpha subuni 91.7 0.27 5.9E-06 55.9 5.8 82 190-276 179-275 (354)
488 TIGR01968 minD_bact septum sit 91.6 0.34 7.3E-06 52.7 6.4 65 210-276 111-176 (261)
489 KOG0780 Signal recognition par 91.5 0.34 7.4E-06 54.9 6.1 131 140-276 101-253 (483)
490 PRK08118 topology modulation p 91.4 0.17 3.7E-06 51.8 3.5 25 141-165 2-26 (167)
491 cd01854 YjeQ_engC YjeQ/EngC. 91.3 0.2 4.4E-06 55.9 4.3 46 231-276 75-122 (287)
492 PRK13833 conjugal transfer pro 91.3 0.64 1.4E-05 52.7 8.2 33 128-163 135-167 (323)
493 PRK12288 GTPase RsgA; Reviewed 91.1 0.5 1.1E-05 54.3 7.2 45 232-276 118-163 (347)
494 PRK09270 nucleoside triphospha 91.0 0.25 5.3E-06 53.3 4.4 35 129-163 22-56 (229)
495 PHA02518 ParA-like protein; Pr 90.8 0.99 2.2E-05 47.4 8.8 65 209-275 75-145 (211)
496 COG1126 GlnQ ABC-type polar am 90.8 0.18 3.8E-06 53.3 2.9 20 142-161 30-49 (240)
497 COG0572 Udk Uridine kinase [Nu 90.7 0.23 5E-06 52.7 3.7 33 133-165 1-33 (218)
498 cd02019 NK Nucleoside/nucleoti 90.6 0.23 4.9E-06 43.0 3.0 21 143-163 2-22 (69)
499 COG1136 SalX ABC-type antimicr 90.6 0.18 3.9E-06 54.1 2.8 18 143-160 34-51 (226)
500 PRK01889 GTPase RsgA; Reviewed 90.4 0.31 6.7E-06 56.2 4.8 45 232-276 110-155 (356)
No 1
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-260 Score=2142.48 Aligned_cols=970 Identities=70% Similarity=1.139 Sum_probs=928.7
Q ss_pred CCccccccccCCCCCCccCccccCCCCCCCCCCCCCCCcCCCCchhhhhhhccCCccccCCCCcccchhhhccccccCCC
Q 001965 1 MDDSLYDEFGNYIGPEIESDRESEADDDEDEDLPDKADEDGHASDREVAATASNGWITASNDVDMDNQIVLAEDKKYYPT 80 (989)
Q Consensus 1 m~~~~ydefgn~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 80 (989)
||.|||||||||||||+|||+|++...++.+.++.+++ ++++ .....++..+++++||||||+|||+
T Consensus 1 Me~dLyDEFGNyiGpe~dsDee~~~~~~~~d~~e~~~~-d~~e------------~~~~~~e~~~~~~vvLhedK~yyps 67 (971)
T KOG0468|consen 1 MESDLYDEFGNYIGPELDSDEEEDDSVEDEDLQEVDQD-DEDE------------MEGDHNEDEPQNAVVLHEDKKYYPS 67 (971)
T ss_pred CcchhhhHhccccCCccCCcccccccccchhhhhccCC-cccc------------cccccccccccceeeeccccccCcc
Confidence 89999999999999999999887764422222111111 1110 0111222257899999999999999
Q ss_pred cccccCccceeeeccCCCCCCCcCcccccccceeEeecccc-cccccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHH
Q 001965 81 AEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVKDS-STYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDM 159 (989)
Q Consensus 81 ~~~~~~~~~e~~~~eed~q~l~~pii~p~~~~~~~~~e~~l-~~~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~ 159 (989)
|+++||+||||++|+||+||+++|||+|+++++|++.++++ ++.|+++||..||++|.+||||+++||.|||||+|+++
T Consensus 68 aeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~ 147 (971)
T KOG0468|consen 68 AEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDL 147 (971)
T ss_pred cccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEEEEEeeccccChhHHHHh
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEE
Q 001965 160 LIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAV 239 (989)
Q Consensus 160 Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ai 239 (989)
|+.++| .++........||+|++..|++||+||+++++++..++.++++|.+|++|||||+||++|+.+++|.+||+|
T Consensus 148 Lv~~tH--p~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvV 225 (971)
T KOG0468|consen 148 LVEQTH--PDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVV 225 (971)
T ss_pred hceecc--ccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEE
Confidence 999998 333344555789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCC
Q 001965 240 LIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAA 319 (989)
Q Consensus 240 lVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~ 319 (989)
||||+.+|++.+|+++++++.+.++|+++||||+||+++||||||.+||+||+|++++||.+++.+.. +..+.++|+.
T Consensus 226 lvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~is~~s~--~~~~~~sP~~ 303 (971)
T KOG0468|consen 226 LVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLISTFSK--DDNPVVSPIL 303 (971)
T ss_pred EEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcchhhhccc--cccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998763 4578999999
Q ss_pred CceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHH
Q 001965 320 GNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQ 399 (989)
Q Consensus 320 gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~ 399 (989)
|||||+|+++||||||.+||++|++..|- ++..+|++|||||+||+++|+||+++++....+|+||+|||||+||++++
T Consensus 304 gNvcFaS~~~g~cFtl~sFak~Y~~~~~~-~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq 382 (971)
T KOG0468|consen 304 GNVCFASGKLGFCFTLKSFAKLYADAHGH-IDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQ 382 (971)
T ss_pred CceeeeccccceeeehHHHHHHHHHhcCC-cchhhhhhhhhccccccccccccccCCCCCcccchhhhhhHhHHHHHHHH
Confidence 99999999999999999999999994443 89999999999999999999999999998888999999999999999999
Q ss_pred HhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccce
Q 001965 400 VIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYK 479 (989)
Q Consensus 400 ~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~ 479 (989)
++++.++.|...|.+||+.|++++++.++|++|+.+|.+|||...+|+||+++|+|||.+++.+++.+.|+|+.++.+.+
T Consensus 383 ~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~ 462 (971)
T KOG0468|consen 383 VIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYE 462 (971)
T ss_pred HhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhhhccccceeecCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccc
Q 001965 480 AMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISS 559 (989)
Q Consensus 480 ~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~ 559 (989)
.|..|++.+|||++++||++..+...|.+|+||+||+++.||.|+++|++|+..|++|+..+.|+++|++.+||+++|++
T Consensus 463 ~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~ 542 (971)
T KOG0468|consen 463 GMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSR 542 (971)
T ss_pred HHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEcc
Q 001965 560 APPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEE 639 (989)
Q Consensus 560 a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~ee 639 (989)
|+||+||+|.|+++++.||+|+++....++.++|+|++|++.||+|+|+||.||+|||||++||+|++|+||++.+++||
T Consensus 543 ~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEE 622 (971)
T KOG0468|consen 543 APAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEE 622 (971)
T ss_pred cCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhh
Confidence 99999999999999999999999876677899999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhhhcC
Q 001965 640 SGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENG 719 (989)
Q Consensus 640 tGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~ 719 (989)
||||+|+|+|||||||+|+|||+.|++|+|||++|+|.||||++++|+++||++||||+|+|+|.+|||+++++++||+|
T Consensus 623 SGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng 702 (971)
T KOG0468|consen 623 SGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENG 702 (971)
T ss_pred cCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhhccCCCccCceeeeechhhhhhhHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCC
Q 001965 720 VVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEP 799 (989)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~eP 799 (989)
++.+.|++|++++|||.+|+||.|++|+||||||+.+|||||+|||+|++++|+++.++|++|+|||||++++||||+||
T Consensus 703 ~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~Ep 782 (971)
T KOG0468|consen 703 VVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEP 782 (971)
T ss_pred eEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccC
Q 001965 800 IRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQ 879 (989)
Q Consensus 800 v~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~ 879 (989)
|+||+|+|.|+++++++++|++|||||+|||+||+||++|.||||||+|.|||++|++|+..||++|+||||||+++.+.
T Consensus 783 Ir~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~ 862 (971)
T KOG0468|consen 783 IRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPV 862 (971)
T ss_pred ccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecCCCCcccccccCCCCCCChhhHHHHHHHHHHhccCC
Q 001965 880 PGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM 959 (989)
Q Consensus 880 ~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl 959 (989)
+|+|+|+|+|+|||+|||||+||||.+|||||+|++.|+||++|||||+|++|.++||||+|++||||+||.||||||||
T Consensus 863 pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGl 942 (971)
T KOG0468|consen 863 PGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGL 942 (971)
T ss_pred CCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCHHHHHHHHHhcccccccC
Q 001965 960 SEDVSINKFFDEAMVVELAQQAADLHQQM 988 (989)
Q Consensus 960 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 988 (989)
++|+|.+||||++|+.+||+++.++++||
T Consensus 943 sedvS~~kffd~~m~~eL~~q~~~~~l~~ 971 (971)
T KOG0468|consen 943 SEDVSINKFFDDPMLLELAKQDVVLGLPM 971 (971)
T ss_pred ccccccCcccchHHHHHHHHhhhhcCCCC
Confidence 99999999999999999999999999998
No 2
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-191 Score=1547.65 Aligned_cols=824 Identities=42% Similarity=0.748 Sum_probs=789.7
Q ss_pred ccccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEE
Q 001965 123 TYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202 (989)
Q Consensus 123 ~~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~ 202 (989)
+.|..+.++.+|.++.+|||+.+++|++||||||+++|+..++.++ ...+|.+||+|++++||+|||||+++.+++.
T Consensus 2 v~Ftvd~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis---~akaGe~Rf~DtRkDEQeR~iTIKStAISl~ 78 (842)
T KOG0469|consen 2 VAFTVDQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIIS---AAKAGETRFTDTRKDEQERGITIKSTAISLF 78 (842)
T ss_pred ccccHHHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceee---ecccCCccccccccchhhcceEeeeeeeeeh
Confidence 5688899999999999999999999999999999999999999887 5667889999999999999999999999987
Q ss_pred eec-----------CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEE
Q 001965 203 LED-----------SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVN 271 (989)
Q Consensus 203 ~~~-----------~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviN 271 (989)
++- .++.+++|||||.|||+||++|+.+|||+.|||++|||+++|++.||+++++|+..+++..++|+|
T Consensus 79 ~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~N 158 (842)
T KOG0469|consen 79 FEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMN 158 (842)
T ss_pred hhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEee
Confidence 642 345689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccc
Q 001965 272 KVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFD 351 (989)
Q Consensus 272 KiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~ 351 (989)
|+||..+||++++++-|+.++++++.+|.+++.+..+.-....+.|.+|+|.|+|+++||+|||.+||.+|+..-| +|
T Consensus 159 K~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~--~~ 236 (842)
T KOG0469|consen 159 KMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFG--ID 236 (842)
T ss_pred hhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhC--Cc
Confidence 9999999999999999999999999999999998764445678899999999999999999999999999998334 89
Q ss_pred hhhhhhhhcccccccCCCCeEEeCCCC---CCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcc
Q 001965 352 AEKFASRLWGDMYFHPDTRVFKKKPPA---SGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNV 428 (989)
Q Consensus 352 ~~~~~~~lwgd~y~~~~~~~~~~~~~~---~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~ 428 (989)
..++.++|||+.|||+++++|++.... ...+|.|+.|||.|||++++++..-..+++..+|+.+++.+..++....-
T Consensus 237 ~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eG 316 (842)
T KOG0469|consen 237 VRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEG 316 (842)
T ss_pred HHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccc
Confidence 999999999999999999999876533 23578999999999999999999888899999999999999999999999
Q ss_pred hHHHHhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeE
Q 001965 429 RPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDA 508 (989)
Q Consensus 429 ~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a 508 (989)
++|++.+|..|+|.+++||+||+-|||||..+|++|.+.+|.||.+++.+.++++||+++|+++||+||.++.+.|+|+|
T Consensus 317 K~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyA 396 (842)
T KOG0469|consen 317 KALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYA 396 (842)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCC
Q 001965 509 FGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDE 588 (989)
Q Consensus 509 ~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~ 588 (989)
|||||||++..|++|++.|+||+++.+||.....|.+..+||||+.++|+.+|||||++|.|+|++..||+||+. .+
T Consensus 397 FGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt---~e 473 (842)
T KOG0469|consen 397 FGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITT---SE 473 (842)
T ss_pred EeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceee---hh
Confidence 999999999999999999999999999998888999999999999999999999999999999999999999998 46
Q ss_pred ccccccccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccc
Q 001965 589 DVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVE 668 (989)
Q Consensus 589 ~~~~~~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~ie 668 (989)
..+.++.++|...||++||||++||.|||||.+||++|+++||++.+..+|||||+|.|.||||||+|++||.+.|+.|.
T Consensus 474 ~AHNmrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA~iP 553 (842)
T KOG0469|consen 474 AAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIP 553 (842)
T ss_pred hhccceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcccCCc
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccce
Q 001965 669 VKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSI 748 (989)
Q Consensus 669 i~vs~P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~i 748 (989)
++.|+|+|+|||||.+.|+..|+.++|||||+|+|++||+++++.++|++|.++.+...|.+..+|.++|+||...||+|
T Consensus 554 lk~sdPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKI 633 (842)
T KOG0469|consen 554 LKKSDPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKI 633 (842)
T ss_pred eecCCCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhhee
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred EEeCCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHH
Q 001965 749 WAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTA 828 (989)
Q Consensus 749 w~fgP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~ 828 (989)
|||||+.+|||+++|.|.+ -+|+++||+|++.|||||+++|||+||.||||+|.|+|+.++.+++|||+|||||++
T Consensus 634 WCfgPd~tg~Nll~D~TK~----vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~ 709 (842)
T KOG0469|consen 634 WCFGPDGTGPNLLVDQTKG----VQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTA 709 (842)
T ss_pred eEeCCCCCCCcEEEecchh----hHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHH
Confidence 9999999999999999987 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCC
Q 001965 829 RRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQ 908 (989)
Q Consensus 829 r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~ 908 (989)
||+||++++.|+|+|+||+|.||||||++++|.||++|++|||||.+++..+|+|+|.|+|++||.|||||..|||+.|.
T Consensus 710 rr~~ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~ 789 (842)
T KOG0469|consen 710 RRVLYASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTG 789 (842)
T ss_pred HHHHHHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeeeccceeecCCCCcccccccCCCCCCChhhHHHHHHHHHHhccCCCCCCC-ccccCC
Q 001965 909 GQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVS-INKFFD 970 (989)
Q Consensus 909 G~a~~~~~F~hw~~vp~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl~~~~~-~~~~~d 970 (989)
|||++||.|+||+++||||+|.. ++.-+.+..+|+||||.+.++ +..|+|
T Consensus 790 GqAfpq~vFdHws~lpgdp~dp~------------sk~~~iV~~~RKrkglke~~P~~~~y~D 840 (842)
T KOG0469|consen 790 GQAFPQMVFDHWSILPGDPLDPT------------SKPGQIVLATRKRKGLKEGVPDLDEYLD 840 (842)
T ss_pred CccccceeeeccccCCCCCCCCC------------ccchHHHHHHHHhcCCCCCCCChHHHhh
Confidence 99999999999999999999855 677789999999999999995 999998
No 3
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.1e-159 Score=1480.56 Aligned_cols=826 Identities=40% Similarity=0.706 Sum_probs=756.8
Q ss_pred ccccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEE
Q 001965 123 TYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202 (989)
Q Consensus 123 ~~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~ 202 (989)
.+|+.++|.+||+++++||||||+||+|||||||+++|++.+|.+.+ ...+.++++|+.++|++||+|++++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~D~~~~E~~rgiti~~~~~~~~ 78 (843)
T PLN00116 2 VKFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRADEAERGITIKSTGISLY 78 (843)
T ss_pred CccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCccc---ccCCceeeccCcHHHHHhCCceecceeEEE
Confidence 56899999999999999999999999999999999999999998874 356678899999999999999999999999
Q ss_pred eec-----------CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEE
Q 001965 203 LED-----------SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVN 271 (989)
Q Consensus 203 ~~~-----------~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviN 271 (989)
|.. .+.+++.+||||||||.||..++.+|++.+|+||+||||.+|++.||+++|+++...++|+|+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iN 158 (843)
T PLN00116 79 YEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVN 158 (843)
T ss_pred eecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEE
Confidence 852 234578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhh-ccCccc
Q 001965 272 KVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVK-LHGVPF 350 (989)
Q Consensus 272 KiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~-~~g~~i 350 (989)
|||+++.||+++|.++|.++++++++||.+++.+....-....++|++|||+|+|+.+||+|++..|+.+|.. |. +
T Consensus 159 K~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~---~ 235 (843)
T PLN00116 159 KMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG---V 235 (843)
T ss_pred CCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhC---C
Confidence 9999999999999999999999999999888776422112357889999999999999999999999999987 54 6
Q ss_pred chhhhhhhhcccccccCCCCeEEeCCCC-CCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcch
Q 001965 351 DAEKFASRLWGDMYFHPDTRVFKKKPPA-SGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVR 429 (989)
Q Consensus 351 ~~~~~~~~lwgd~y~~~~~~~~~~~~~~-~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~ 429 (989)
+...+.+++||++||++++++++..+.+ ....+.|++|||+|+|++++++++.+++.|++||+++++.|++++++...+
T Consensus 236 ~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~ 315 (843)
T PLN00116 236 DESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGK 315 (843)
T ss_pred cHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhH
Confidence 7788899999999999999999877632 234678999999999999999998888889999998889999999988667
Q ss_pred HHHHhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEE
Q 001965 430 PLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAF 509 (989)
Q Consensus 430 ~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~ 509 (989)
.+++.++..||+.++.|||+|++++|||.+++..++.++|.++.+.+...+++.||+++|++|+|||++++++.+++++|
T Consensus 316 ~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~ 395 (843)
T PLN00116 316 ALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAF 395 (843)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEE
Confidence 77788888898889999999999999999988888988888876666677899999999999999999999988778999
Q ss_pred EEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCc
Q 001965 510 GRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDED 589 (989)
Q Consensus 510 ~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~ 589 (989)
+|||||+|++||.|+++|++++.+..++.+.++|++||+++|++.++|++|+|||||+|.|+++++++++||++.. ...
T Consensus 396 ~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~-~~~ 474 (843)
T PLN00116 396 GRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEK-EVD 474 (843)
T ss_pred EEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCc-ccC
Confidence 9999999999999999999988766666667899999999999999999999999999999999888899998731 013
Q ss_pred cccccccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhc-ccc
Q 001965 590 VYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYS-EVE 668 (989)
Q Consensus 590 ~~~~~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~-~ie 668 (989)
+..|.++.++.+||++++|||.+++|++||.+||++|+++||++.++.+||||++|+||||||||||++||+++|+ +|+
T Consensus 475 ~~~l~~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~ve 554 (843)
T PLN00116 475 AHPIKAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAE 554 (843)
T ss_pred CccccccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCc
Confidence 5677888874499999999999999999999999999999999999889999999999999999999999999994 499
Q ss_pred eEEcccEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccce
Q 001965 669 VKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSI 748 (989)
Q Consensus 669 i~vs~P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~i 748 (989)
|++|+|+|+|||||.+++...+..++++++++|+++++|++++..+.++.+.+....+.+.++..+...|+|+.+.++++
T Consensus 555 v~~s~p~V~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 634 (843)
T PLN00116 555 IKVSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKI 634 (843)
T ss_pred EEEcCCeEEEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCe
Confidence 99999999999999998876666677889999999999999999899999988776666777778888899999999999
Q ss_pred EEeCCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHH
Q 001965 749 WAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTA 828 (989)
Q Consensus 749 w~fgP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~ 828 (989)
|+|||+..|+|+|++++.+ ++++++++++|++||+|||++||||||||+||+|+|+|+.++++..+.++||+++|+
T Consensus 635 ~~~gp~~~~~~~~~~~~~g----~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~ 710 (843)
T PLN00116 635 WCFGPETTGPNMVVDMCKG----VQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTA 710 (843)
T ss_pred eeecCCCCCceEEEECCcc----hhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHH
Confidence 9999998899999999876 578899999999999999999999999999999999999998877788889999999
Q ss_pred HHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCC
Q 001965 829 RRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQ 908 (989)
Q Consensus 829 r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~ 908 (989)
|+||++||++|+|+||||||+|+|+||++++|+|+++|++|||+|+++++.+|+++++|+|++|++|||||+++||++||
T Consensus 711 ~~a~~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~ 790 (843)
T PLN00116 711 RRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATS 790 (843)
T ss_pred HHHHHHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred ccEEEeeeccceeecCCCCcccccccCCCCCCChhhHHHHHHHHHHhccCCCCC-CCccccCCH
Q 001965 909 GQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED-VSINKFFDE 971 (989)
Q Consensus 909 G~a~~~~~F~hw~~vp~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl~~~-~~~~~~~d~ 971 (989)
|+|+|+|.|+||++||+||+|+ +|+||+||++|||||||+++ |+++||+|+
T Consensus 791 G~g~~~~~f~~y~~v~~dp~~~------------~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~ 842 (843)
T PLN00116 791 GQAFPQCVFDHWDMMSSDPLEA------------GSQAAQLVADIRKRKGLKEQMPPLSEYEDK 842 (843)
T ss_pred CCCeEEEEeceeEECCCCCCCc------------hhHHHHHHHHHHhhCCCCCCCCCHHHhccc
Confidence 9999999999999999999985 39999999999999999995 579999994
No 4
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=9.6e-159 Score=1469.25 Aligned_cols=824 Identities=42% Similarity=0.758 Sum_probs=756.0
Q ss_pred ccccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEE
Q 001965 123 TYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202 (989)
Q Consensus 123 ~~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~ 202 (989)
.+|++++|..+|+++++||||||+||+|||||||+++|++.+|.+.+ ...+.++++|++++|++||+||+++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~D~~~~E~~rgiti~~~~~~~~ 78 (836)
T PTZ00416 2 VNFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISS---KNAGDARFTDTRADEQERGITIKSTGISLY 78 (836)
T ss_pred CccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCccc---ccCCceeecccchhhHhhcceeeccceEEE
Confidence 46899999999999999999999999999999999999999998873 355668889999999999999999999998
Q ss_pred eecC-----CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 203 LEDS-----NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 203 ~~~~-----~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|... +++++.+||||||||.+|..++.++++.+|+||+|||+++|++.||+.+|+++...++|+|+|+||||+++
T Consensus 79 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~ 158 (836)
T PTZ00416 79 YEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAI 158 (836)
T ss_pred eecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhh
Confidence 8532 23478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhh-ccCcccchhhhh
Q 001965 278 TELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVK-LHGVPFDAEKFA 356 (989)
Q Consensus 278 ~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~-~~g~~i~~~~~~ 356 (989)
.|++++|.++|.++++++++||..++.+.........+.|..+||.|+|+.+||+||+.+|+.+|+. | + +++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~-~--~~~~~l~ 235 (836)
T PTZ00416 159 LELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKF-G--VEESKMM 235 (836)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhc-C--CcHHHHH
Confidence 9999999999999999999999999865421111345799999999999999999999999999987 5 4 7888999
Q ss_pred hhhcccccccCCCCeEEeCCCCCC---cchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH
Q 001965 357 SRLWGDMYFHPDTRVFKKKPPASG---GERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR 433 (989)
Q Consensus 357 ~~lwgd~y~~~~~~~~~~~~~~~~---~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~ 433 (989)
+++|||+||+++++++...+.+.+ .+++|++|+++|+|++++.+++.+++.+++||+.+|+.|++++++...+.+++
T Consensus 236 ~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~ 315 (836)
T PTZ00416 236 ERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLK 315 (836)
T ss_pred HHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHH
Confidence 999999999999998887654432 36899999999999999999888888889999988999999997665567888
Q ss_pred hhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEE
Q 001965 434 LACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVY 513 (989)
Q Consensus 434 ~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~ 513 (989)
.++..|+|..++|||+|++++|||.+++..+..++|.++.+.....++++||+++|++|+|||+.++++.++|++|+|||
T Consensus 316 ~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~ 395 (836)
T PTZ00416 316 AVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVF 395 (836)
T ss_pred HHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEE
Confidence 88899999999999999999999999888888888877666666678899999999999999999999988889999999
Q ss_pred eceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccc
Q 001965 514 SGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIF 593 (989)
Q Consensus 514 SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~ 593 (989)
||+|+.||+|+++|++++.++.++....+|++||+++|++..+|++|+|||||+|.|+++++++++||++ ...+..|
T Consensus 396 SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~---~~~~~~l 472 (836)
T PTZ00416 396 SGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITT---SETAHNI 472 (836)
T ss_pred eeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecC---CCCcccc
Confidence 9999999999999999887655555455799999999999999999999999999999987777789987 3446678
Q ss_pred cccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcc
Q 001965 594 RPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVAD 673 (989)
Q Consensus 594 ~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~ 673 (989)
.++.+.++||++++|||.+++|++||.+||++|.++||++.++.+||||++|+||||+|||||++||+++|++|+|++|+
T Consensus 473 ~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~ 552 (836)
T PTZ00416 473 RDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSD 552 (836)
T ss_pred cccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecC
Confidence 88887569999999999999999999999999999999999988999999999999999999999999999669999999
Q ss_pred cEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCC
Q 001965 674 PVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGP 753 (989)
Q Consensus 674 P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP 753 (989)
|+|+|||||++.+...+.+++++++++|++++|||++++.+.++.+.+.....++.++.++...|+|+.+.++++|+|||
T Consensus 553 P~V~yrETI~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~ 632 (836)
T PTZ00416 553 PVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGP 632 (836)
T ss_pred CEEEEEEEecccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccC
Confidence 99999999999988888888899999999999999999999999988877666666667777889999999999999999
Q ss_pred CCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHH
Q 001965 754 DKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAY 833 (989)
Q Consensus 754 ~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~ 833 (989)
+..|+|+|+|++.+ ++++++++++|++||+||+++||||||||+||+|+|+|+.++++..++++||+++|+|+||+
T Consensus 633 ~~~g~nil~~~~~~----~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~ 708 (836)
T PTZ00416 633 ENKGPNVLVDVTKG----VQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFY 708 (836)
T ss_pred CCCCCcEEEecCCc----ccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHH
Confidence 99999999999876 57899999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEE
Q 001965 834 SAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFS 913 (989)
Q Consensus 834 ~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~ 913 (989)
+||++|+|+||||||.|+|+||++++|+||++|++|||+|+++++.+|+++++|+|++|++|||||+++||++|||+|+|
T Consensus 709 ~a~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~ 788 (836)
T PTZ00416 709 ACELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFP 788 (836)
T ss_pred HHHhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceE
Confidence 99999999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred eeeccceeecCCCCcccccccCCCCCCChhhHHHHHHHHHHhccCCCCC-CCccccCCH
Q 001965 914 LSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED-VSINKFFDE 971 (989)
Q Consensus 914 ~~~F~hw~~vp~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl~~~-~~~~~~~d~ 971 (989)
+|.|+||++||+||+|+ +|+||+||++|||||||+++ +.++||+|.
T Consensus 789 ~~~F~~y~~vp~dp~~~------------~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~ 835 (836)
T PTZ00416 789 QCVFDHWQVVPGDPLEP------------GSKANEIVLSIRKRKGLKPEIPDLDNYLDK 835 (836)
T ss_pred EEEeccEEECCCCCCCc------------hhHHHHHHHHHHHhCCCCCCCCCHHHhccc
Confidence 99999999999999986 39999999999999999966 479999983
No 5
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-141 Score=1208.92 Aligned_cols=815 Identities=34% Similarity=0.571 Sum_probs=705.4
Q ss_pred ccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEE
Q 001965 134 MSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLC 213 (989)
Q Consensus 134 ~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~i 213 (989)
.+.++.|||||+++|+|||||||+|+|+..+|.|+ +..+|..||+|++++||.||||++++.+++.. ++|.+
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis---~rlagkirfld~redeq~rgitmkss~is~~~-----~~~~~ 74 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVIS---SRLAGKIRFLDTREDEQTRGITMKSSAISLLH-----KDYLI 74 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEec---hhhccceeeccccchhhhhceeeecccccccc-----CceEE
Confidence 34578999999999999999999999999999887 67889999999999999999999999999776 88999
Q ss_pred EEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHH
Q 001965 214 NIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRH 293 (989)
Q Consensus 214 nlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ 293 (989)
||||+|||+||++|+.+|.|.||+|+++||++||++.||..+++|++..++.+|+|||||||++.|||+.|.+||+++-+
T Consensus 75 nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r 154 (887)
T KOG0467|consen 75 NLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLR 154 (887)
T ss_pred EEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccc-----------CCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhccc
Q 001965 294 TIEVINNHISAASTT-----------AGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGD 362 (989)
Q Consensus 294 ii~~in~~l~~~~~~-----------~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd 362 (989)
+++++|..++.+..+ .+....|.|.+|||+|+||.+||+|++.+||++|+...| .+-.++.+.||||
T Consensus 155 ~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~--~k~~al~k~lwgd 232 (887)
T KOG0467|consen 155 VIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLG--LKDAALLKFLWGD 232 (887)
T ss_pred HHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcC--hhhhhhhhhhccc
Confidence 999999999865422 134678999999999999999999999999999999777 7889999999999
Q ss_pred ccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcC-ChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhccccc
Q 001965 363 MYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGE-HKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFG 441 (989)
Q Consensus 363 ~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~-~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g 441 (989)
+|++++++++.......+.+++|++|+|||+|++|...+.. +.+.+++....+++++.+.+++ .++..+|++|++
T Consensus 233 ~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~im~~wLP 308 (887)
T KOG0467|consen 233 RYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDAIMSTWLP 308 (887)
T ss_pred eeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHHHHHhhcc
Confidence 99999999998877777779999999999999999976644 4477899999999999988877 788999999999
Q ss_pred ChHHHHHHHHHhcCChhhhhhhcccccccCC---CCcccceeeeccCCCCCeEEEEEeeeccCCCC----ceeEEEEEEe
Q 001965 442 SASGFTDMLVKFIPSAKDAAARKVDHIYTGP---KNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCS----VFDAFGRVYS 514 (989)
Q Consensus 442 ~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~---~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~----~~~a~~RV~S 514 (989)
..++.+-+++.++|+|.+++..++.++...+ .+.+.+.++++|++++|.+++|+||...+... ++++|+||||
T Consensus 309 ls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~s 388 (887)
T KOG0467|consen 309 LSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFS 388 (887)
T ss_pred cccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeecc
Confidence 9999999999999999999998888776542 23456788999999999999999999875432 3689999999
Q ss_pred ceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCcccccc
Q 001965 515 GIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFR 594 (989)
Q Consensus 515 GtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~ 594 (989)
||++.||.|+++++ .+..++++..++|.++|++||++.++.+++++||+++|.| -..+.+++|+|+. ..+.++.
T Consensus 389 gTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~---~~~~p~~ 462 (887)
T KOG0467|consen 389 GTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSK---VPCGPNL 462 (887)
T ss_pred CceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceeccc---CCCccee
Confidence 99999999999988 4555668889999999999999999999999999999999 7788889999983 3455555
Q ss_pred ccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccceEEccc
Q 001965 595 PLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADP 674 (989)
Q Consensus 595 ~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P 674 (989)
...|...|+++|||||.+|.|+++|.+||+.|++.||++++.++++|||++.+.||+|||.|+.||+. |++++|++|+|
T Consensus 463 ~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP 541 (887)
T KOG0467|consen 463 VVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEP 541 (887)
T ss_pred eeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCC
Confidence 57778899999999999999999999999999999999999999999999999999999999999999 98999999999
Q ss_pred EEEEEeeeeccccce-------eeeecCCCceEEEEEEEeCCchhhhhhhcCcc---------------------ccccc
Q 001965 675 VVSFCETVVESSSMK-------CFAETPNKKNKITMIAEPLERGLAEDIENGVV---------------------SIDWS 726 (989)
Q Consensus 675 ~V~yrETI~~~s~~~-------~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~---------------------~~~~~ 726 (989)
.|+||||+.+.|.+. .....+.+.-+|.+++-|+..-+.+....... .+. +
T Consensus 542 ~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~-e 620 (887)
T KOG0467|consen 542 LVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFE-E 620 (887)
T ss_pred ccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhcccccccccccccccccc-c
Confidence 999999998776432 11234556678888888886432221111100 000 0
Q ss_pred hhhhhhhhh-----hhc---cchhhhccceEEeCCCCCCCceEeccCCCch---hh-HHHHHHHHHHHHHHHHHhHhcCC
Q 001965 727 RKTLGDFFK-----TKY---DWDLLAARSIWAFGPDKQGPNILLDDTLPTE---VD-KSLLNAVKDSIVQGFQWGAREGP 794 (989)
Q Consensus 727 ~~~~~~~~~-----~~~---~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~---v~-k~~l~~v~~si~~Gf~~a~~~GP 794 (989)
...+...+. ++- -|.. --++|||||.+.|||+|++..-.-. .- ..++..+-++++.|||.++..||
T Consensus 621 ~ls~~~s~~~~~~~ek~~e~~~~~--~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGP 698 (887)
T KOG0467|consen 621 NLSLLISLERLYEFEKPREKLGSF--KDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGP 698 (887)
T ss_pred cccHHHHHHHHhhccccHHHHHHH--HhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCc
Confidence 000001111 100 0111 1468999999999999997542110 00 01233367899999999999999
Q ss_pred CCCCCeeeEEEEEEeeeecC-CCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceE
Q 001965 795 LCDEPIRNVKFKIVDARIAP-EPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHV 873 (989)
Q Consensus 795 L~~ePv~~v~~~l~d~~~s~-~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I 873 (989)
||.|||+|++|.+..+.... +.....+||+|.+++.+|++||+...||||.|||.|+|++..+++|+||.+|+||+|+|
T Consensus 699 lc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkV 778 (887)
T KOG0467|consen 699 LCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKV 778 (887)
T ss_pred ccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchh
Confidence 99999999999999854322 22344569999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecCCCCcccccccCCC----CCCChhhHHHHH
Q 001965 874 TADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPL----EPAPIQHLAREF 949 (989)
Q Consensus 874 ~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp~dp~~~~i~~~~l----~~~~~~~~ar~~ 949 (989)
+++++++||++|.|+|++||+|||||+.+||..|||.|++|+.|+||++++.||||-+.+.++| +.|+.+|.||.|
T Consensus 779 LsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ArkY 858 (887)
T KOG0467|consen 779 LSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIARKY 858 (887)
T ss_pred hhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 579999999999
Q ss_pred HHHHHhccCCCCCCCccccCCHHHHHHHHHhc
Q 001965 950 MVKTRRRKGMSEDVSINKFFDEAMVVELAQQA 981 (989)
Q Consensus 950 ~~~~R~RKGl~~~~~~~~~~d~~~~~~~~~~~ 981 (989)
|+.+|||||| |-++.++|.||+-
T Consensus 859 MdaVRRRKGL---------fVEEkIVE~AEKQ 881 (887)
T KOG0467|consen 859 MDAVRRRKGL---------FVEEKIVEHAEKQ 881 (887)
T ss_pred HHHHHhhcCC---------chHHHHhhhHHhh
Confidence 9999999999 6667777777653
No 6
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=8.4e-129 Score=1192.39 Aligned_cols=719 Identities=33% Similarity=0.558 Sum_probs=634.3
Q ss_pred HHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC
Q 001965 127 TQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS 206 (989)
Q Consensus 127 ~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 206 (989)
.++|.++|+++++||||||+||+|||||||+++|++.+|.+.+ ...+.++++|+.++|++||||++++.+++.|..
T Consensus 7 ~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~---~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~- 82 (731)
T PRK07560 7 VEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISE---ELAGEQLALDFDEEEQARGITIKAANVSMVHEY- 82 (731)
T ss_pred HHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcch---hhcCcceecCccHHHHHhhhhhhccceEEEEEe-
Confidence 5789999999999999999999999999999999999998874 234568899999999999999999999998843
Q ss_pred CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchH
Q 001965 207 NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKD 286 (989)
Q Consensus 207 ~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~ 286 (989)
+++++.+||||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+.+.++++++.+
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~ 162 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQE 162 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccC-CCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccc
Q 001965 287 AYHKLRHTIEVINNHISAASTTA-GNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYF 365 (989)
Q Consensus 287 ~~~~l~~ii~~in~~l~~~~~~~-~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~ 365 (989)
.+.++.++++++|.++..+.... ...+.+.|..|||+|+|++++|+|++..|.+.+..
T Consensus 163 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~--------------------- 221 (731)
T PRK07560 163 MQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIK--------------------- 221 (731)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCC---------------------
Confidence 99999999999999988765311 12456789999999999999999999877532111
Q ss_pred cCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHH
Q 001965 366 HPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASG 445 (989)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~ 445 (989)
| +.+++.| ..+ +.+++. .|+|..+.
T Consensus 222 -------------------~-----~~l~e~~---~~~----------------~~~~l~------------~~~Pv~~~ 246 (731)
T PRK07560 222 -------------------F-----KDIIDYY---EKG----------------KQKELA------------EKAPLHEV 246 (731)
T ss_pred -------------------H-----HHHHHHH---hcC----------------CHHHHH------------hhccchhH
Confidence 1 1122222 111 112221 23555689
Q ss_pred HHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEE
Q 001965 446 FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRV 525 (989)
Q Consensus 446 lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~v 525 (989)
|||+|++++|||.++++.+...+|.+...++..+.+++||+++|++++|||++++++. ++++|+|||||+|++||.|++
T Consensus 247 Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~-G~va~~RV~sGtL~~Gd~v~~ 325 (731)
T PRK07560 247 VLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHA-GEVATGRVFSGTLRKGQEVYL 325 (731)
T ss_pred HHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCC-CeEEEEEEEEeEEcCCCEEEE
Confidence 9999999999999999888888888776665667789999999999999999999976 579999999999999999999
Q ss_pred ccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEE
Q 001965 526 LGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVK 605 (989)
Q Consensus 526 lg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~ 605 (989)
.+.++ .++|++|++++|++..++++|+|||||+|.|+++..+ |+||++ .....+|.++.+.++|+++
T Consensus 326 ~~~~~---------~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~-GdtL~~---~~~~~~~~~~~~~p~Pv~~ 392 (731)
T PRK07560 326 VGAKK---------KNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARA-GETVVS---VEDMTPFESLKHISEPVVT 392 (731)
T ss_pred cCCCC---------ceEeheehhhhcCCCceeeeECCCCEEEEEccccccc-CCEEeC---CCccccccccccCCCCeEE
Confidence 88763 4789999999999999999999999999999988776 899987 3345678887656899999
Q ss_pred EEeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeec
Q 001965 606 TATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVE 684 (989)
Q Consensus 606 vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~ 684 (989)
++|+|.+++|++||.+||++|.++||++.+.. ++|||++|+|+||||||+|++||+++|+ ++|++++|.|+|||||.+
T Consensus 393 ~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~-vev~~~~p~V~yrETI~~ 471 (731)
T PRK07560 393 VAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYG-IEVVTSEPIVVYRETVRG 471 (731)
T ss_pred EEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhC-CceEecCCEEEEEEeccc
Confidence 99999999999999999999999999999987 6899999999999999999999999996 999999999999999998
Q ss_pred cccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhh---hccchhhhccceEEeCCCCCCCceE
Q 001965 685 SSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKT---KYDWDLLAARSIWAFGPDKQGPNIL 761 (989)
Q Consensus 685 ~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~---~~~wd~l~a~~iw~fgP~~~g~nil 761 (989)
++. .+.+.+++++++|+|+++|++++..+.++.+......+.+.. +.|.. +|||+..+++++|+|+ ++|+|
T Consensus 472 ~~~-~~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~----~~~~f 545 (731)
T PRK07560 472 KSQ-VVEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY----NGNVF 545 (731)
T ss_pred Ccc-ceEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCCchhhhhceeecc----CCeEE
Confidence 874 244568899999999999999999899999887666555555 56655 8999999999999995 68999
Q ss_pred eccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCC
Q 001965 762 LDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATP 841 (989)
Q Consensus 762 ~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~p 841 (989)
+|.+.++.+++++ +++|++||+|||++||||||||+||+|+|+|+.++++..++..+|+++|+|+||++||++|+|
T Consensus 546 ~~~~~gg~~~~~~----~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p 621 (731)
T PRK07560 546 IDMTKGIQYLNEV----MELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKP 621 (731)
T ss_pred EECCCCccCHHHH----HHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCC
Confidence 9999998777654 467789999999999999999999999999999999899999999999999999999999999
Q ss_pred eeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeecccee
Q 001965 842 RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWA 921 (989)
Q Consensus 842 rLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~ 921 (989)
+||||||.|+|+||++++|+||++|++|||+|++++.. +++++|+|++|++|+|||+++||++|+|+|+|+|.|+||+
T Consensus 622 ~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~--~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 699 (731)
T PRK07560 622 TLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQE--GDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFE 699 (731)
T ss_pred EEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecC--CCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccce
Confidence 99999999999999999999999999999999987653 3479999999999999999999999999999999999999
Q ss_pred ecCCCCcccccccCCCCCCChhhHHHHHHHHHHhccCCCCCCCc-cccCC
Q 001965 922 IVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSI-NKFFD 970 (989)
Q Consensus 922 ~vp~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl~~~~~~-~~~~d 970 (989)
+||+ ++|+++|.++||||||+++++. ..|+|
T Consensus 700 ~v~~------------------~~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 700 PVPD------------------SLQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred eCCH------------------HHHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 9984 7999999999999999999974 55544
No 7
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-126 Score=1136.37 Aligned_cols=674 Identities=30% Similarity=0.449 Sum_probs=573.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCC-ceEEEE
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSK-SYLCNI 215 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~-~~~inl 215 (989)
++++|||+|+||+|||||||+++|++.+|.+.+.|.+..| .+++|+.++|++|||||+++++++.| + +++|||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g-~~~~D~~e~EqeRGITI~saa~s~~~-----~~~~~iNl 80 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG-AATMDWMEQEQERGITITSAATTLFW-----KGDYRINL 80 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC-CccCCCcHHHHhcCCEEeeeeeEEEE-----cCceEEEE
Confidence 7899999999999999999999999999999999888877 88999999999999999999999999 5 599999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
||||||+||..||.+++|++||||+||||++|+++||+++|++|.++++|+++|+|||||+++++. .++
T Consensus 81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~-----------~~~ 149 (697)
T COG0480 81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFY-----------LVV 149 (697)
T ss_pred eCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChh-----------hhH
Confidence 999999999999999999999999999999999999999999999999999999999999998854 455
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
+++...|+. ...+.+.|++.. ..|.|+ +|+.+.....|++ ...-.+ .
T Consensus 150 ~~l~~~l~~-----~~~~v~~pIg~~---------------------~~f~g~-idl~~~~~~~~~~----~~~~~~--~ 196 (697)
T COG0480 150 EQLKERLGA-----NPVPVQLPIGAE---------------------EEFEGV-IDLVEMKAVAFGD----GAKYEW--I 196 (697)
T ss_pred HHHHHHhCC-----CceeeeccccCc---------------------cccCce-eEhhhcCeEEEcC----Ccccce--e
Confidence 666666654 234566666442 114444 7777777777763 111112 2
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHH-HHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccC------hHHH
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKS-VEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGS------ASGF 446 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~-L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~------~~~l 446 (989)
+.|.. ..+...+ .+..+.+.+++.|+. +++||+ |..++.++++..++..+. .+.|+++|+ .+.|
T Consensus 197 ~ip~~----~~~~~~e-~r~~~~e~i~e~de~l~e~yl~--g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~l 269 (697)
T COG0480 197 EIPAD----LKEIAEE-AREKLLEALAEFDEELMEKYLE--GEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPL 269 (697)
T ss_pred eCCHH----HHhHHHH-HHHHHHHHHhhcCHHHHHHHhc--CCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHH
Confidence 22321 1111112 223333334444554 466777 677999999988887764 355555555 4899
Q ss_pred HHHHHHhcCChhhhhhhcccccccCCCCcccceeee-ccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEE
Q 001965 447 TDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMV-DCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRV 525 (989)
Q Consensus 447 ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~-~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~v 525 (989)
||+|++|||||.+++ .|.|..+++...++. .++.++|++|+|||+..+++.| .++|+|||||||++|+.|++
T Consensus 270 Ldav~~~lPsP~e~~------~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g-~l~~~RvysGtl~~G~~v~n 342 (697)
T COG0480 270 LDAVVDYLPSPLDVP------PIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVG-KLTFVRVYSGTLKSGSEVLN 342 (697)
T ss_pred HHHHHHHCCChhhcc------cccccCCccccchhcccCCCCCceEEEEEEeEecCCCC-eEEEEEEeccEEcCCCEEEe
Confidence 999999999999977 345655555444444 3456899999999999999875 59999999999999999999
Q ss_pred ccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEE
Q 001965 526 LGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVK 605 (989)
Q Consensus 526 lg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~ 605 (989)
.+.+ +.++|++|++++|++++++++++||||+++.||+.+.+ ++|+|+. ....++.++.|+ +||++
T Consensus 343 ~~~~---------~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~t-GdTl~~~---~~~v~~~~~~~p-ePVi~ 408 (697)
T COG0480 343 STKG---------KKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATT-GDTLCDE---NKPVILESMEFP-EPVIS 408 (697)
T ss_pred CCCC---------ccEEEEEEEEccCCceeecccccCccEEEEEccccccc-CCeeecC---CCccccccccCC-CceEE
Confidence 8765 57899999999999999999999999999999999866 7999983 236788999974 99999
Q ss_pred EEeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeec
Q 001965 606 TATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVE 684 (989)
Q Consensus 606 vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~ 684 (989)
+||||++++|++||.+||++|+++||++.++. +|||||+|+|||||||||++++|++.|+ |++.+++|+|+|||||..
T Consensus 409 vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~-Vev~~~~PqV~YrETi~~ 487 (697)
T COG0480 409 VAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFG-VEVEVGKPQVAYRETIRK 487 (697)
T ss_pred EEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcC-ceEEecCCeeEEEEeecc
Confidence 99999999999999999999999999999987 8999999999999999999999999997 999999999999999998
Q ss_pred cccceee-----eecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCc
Q 001965 685 SSSMKCF-----AETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPN 759 (989)
Q Consensus 685 ~s~~~~~-----a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~n 759 (989)
++. ... +.++++++++++.+||++++.+.
T Consensus 488 ~~~-~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~--------------------------------------------- 521 (697)
T COG0480 488 KSE-VEGKHKKQSGGPGQYGHVYIEIEPLEDGSGF--------------------------------------------- 521 (697)
T ss_pred ccc-ceeeeeeccCCCCcccEEEEEEEeCCCCcce---------------------------------------------
Confidence 877 333 55789999999999999986522
Q ss_pred eEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhc
Q 001965 760 ILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMA 839 (989)
Q Consensus 760 il~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A 839 (989)
.|.+...++.+|++|+++++ +||+||+++||||||||+||+|+|.|+++|++. ++.+|+++++++||++|+++|
T Consensus 522 ~f~~~i~~g~~P~~yi~~ve----~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd--ss~~af~~a~~~a~~~a~~~a 595 (697)
T COG0480 522 EFVDKIVGGVVPKEYIPAVE----KGFREALKSGPLAGYPVVDVKVTLLDGSYHEVD--SSEMAFKIAASLAFKEAMLKA 595 (697)
T ss_pred EEEeecccCcCchhhhHHHH----HHHHHHHhcCCCCCCceEeeEEEEEcCccccCC--CCHHHHHHHHHHHHHHHHhhC
Confidence 22333333456788998877 699999999999999999999999999998766 667899999999999999999
Q ss_pred CCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccc
Q 001965 840 TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDH 919 (989)
Q Consensus 840 ~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~h 919 (989)
+|+||||||.|+|++|++++|+|+++|++|||+|++++..+|+++++|+|++|++|||||+++|||+|||+|+|+|.|+|
T Consensus 596 ~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~ 675 (697)
T COG0480 596 KPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDH 675 (697)
T ss_pred CceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999987888999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccccCCCCCCChhhHHHHHHHHHHhccCC
Q 001965 920 WAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM 959 (989)
Q Consensus 920 w~~vp~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl 959 (989)
|++||. ++|++++.++|+|||+
T Consensus 676 y~~vp~------------------~~a~~ii~~~~~~~~~ 697 (697)
T COG0480 676 YEEVPS------------------SVAEEIIAKRRKRKGL 697 (697)
T ss_pred cEeCCH------------------HHHHHHHHHhhhhcCC
Confidence 999993 8999999999999996
No 8
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=5.7e-125 Score=1155.43 Aligned_cols=712 Identities=31% Similarity=0.522 Sum_probs=621.7
Q ss_pred HHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC
Q 001965 127 TQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS 206 (989)
Q Consensus 127 ~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 206 (989)
.++|.++|++++++|||+|+||.|||||||+++|++.+|.+.+ ...+..+++|+.++|++||+|+.++.+++.+ ..
T Consensus 6 ~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~---~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~-~~ 81 (720)
T TIGR00490 6 IDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISE---ELAGQQLYLDFDEQEQERGITINAANVSMVH-EY 81 (720)
T ss_pred HHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCch---hcCCceeecCCCHHHHhhcchhhcccceeEE-ee
Confidence 4788999999999999999999999999999999999998864 3455678899999999999999998887654 23
Q ss_pred CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchH
Q 001965 207 NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKD 286 (989)
Q Consensus 207 ~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~ 286 (989)
+++++.+||||||||.+|..++.++++.+|+||+|||+.+|++.+|+.+|+++...++|+++|+||+|+...+++..+.+
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~ 161 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQE 161 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccC-CCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccc
Q 001965 287 AYHKLRHTIEVINNHISAASTTA-GNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYF 365 (989)
Q Consensus 287 ~~~~l~~ii~~in~~l~~~~~~~-~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~ 365 (989)
.+.++..+++.++..+....+.. ...+.+.|..||++|+|++++|+|++++|.+.. +.
T Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~-------~~-------------- 220 (720)
T TIGR00490 162 LQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG-------IG-------------- 220 (720)
T ss_pred HHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcC-------CC--------------
Confidence 99999999999999986543211 123568899999999999999999999874211 00
Q ss_pred cCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHH
Q 001965 366 HPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASG 445 (989)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~ 445 (989)
|. .+| +++.. + ..+++. .|+|..+.
T Consensus 221 -------------------~~-----~l~---------------~~~~~-~---~~~~~~------------~~~Pv~~~ 245 (720)
T TIGR00490 221 -------------------FK-----DIY---------------KYCKE-D---KQKELA------------KKSPLHQV 245 (720)
T ss_pred -------------------HH-----HHH---------------HHHHh-c---cHHHHh------------hhhhHHHH
Confidence 11 022 22211 0 011111 24555789
Q ss_pred HHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEE
Q 001965 446 FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRV 525 (989)
Q Consensus 446 lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~v 525 (989)
|||+|++++|||.+++.+++..+|.++.+++...++++||+++|++++|||+.++++. ++++|+|||||+|++||.|++
T Consensus 246 Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~-G~ia~~RV~sGtL~~G~~l~~ 324 (720)
T TIGR00490 246 VLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHA-GEVAVGRLYSGTIRPGMEVYI 324 (720)
T ss_pred HHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCC-cEEEEEEEEeCEEcCCCEEEE
Confidence 9999999999999988888888887754555556789999999999999999998876 469999999999999999999
Q ss_pred ccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEE
Q 001965 526 LGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVK 605 (989)
Q Consensus 526 lg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~ 605 (989)
.+.+ ..++|++|++++|++..++++|+|||||+|.|++++.+ |+||++. ...+.+|.++.+.++|+++
T Consensus 325 ~~~~---------~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~-GdtL~~~--~~~~~~~~~~~~~~~Pv~~ 392 (720)
T TIGR00490 325 VDRK---------AKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVA-GETICTT--VENITPFESIKHISEPVVT 392 (720)
T ss_pred cCCC---------CeeEeeEEEEeccCCccCccEECCCCEEEEECcccccc-CceeecC--CcccccCcccccCCCceEE
Confidence 8876 35789999999999999999999999999999998765 8999873 1234456777656899999
Q ss_pred EEeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeec
Q 001965 606 TATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVE 684 (989)
Q Consensus 606 vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~ 684 (989)
++|+|.+++|++||.+||++|+++||++.+.. +||||++|+||||||||+|++||+++|+ +++++++|.|+|||||+.
T Consensus 393 ~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~~-vev~~~~P~V~YrETi~~ 471 (720)
T TIGR00490 393 VAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYG-LDVETSPPIVVYRETVTG 471 (720)
T ss_pred EEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHhC-CceeecCCEEEEEEeccc
Confidence 99999999999999999999999999999987 7899999999999999999999999996 999999999999999998
Q ss_pred cccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccc-cccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEec
Q 001965 685 SSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS-IDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLD 763 (989)
Q Consensus 685 ~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~-~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d 763 (989)
.+.. +...+++++++++|+++|+++++.+.|++|.+. +....+.+...+. +||||.+++++||+|| ++|+|+|
T Consensus 472 ~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~----~~~~f~~ 545 (720)
T TIGR00490 472 TSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLI-EAGMDSEEAARVEEYY----EGNLFIN 545 (720)
T ss_pred cccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHH-hcCCchhhhcCEEEec----CCeEEEE
Confidence 8763 224568899999999999999999999998764 3456677788884 6999999999999997 4899999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCee
Q 001965 764 DTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRL 843 (989)
Q Consensus 764 ~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prL 843 (989)
.+.++.+|++++ ++|.+||+||+++||||||||+||+|+|+|+.++.+..+...+|+++|+|+||++||++|+|+|
T Consensus 546 ~~~gg~i~~~~~----~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~L 621 (720)
T TIGR00490 546 MTRGIQYLDETK----ELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVL 621 (720)
T ss_pred CCCCCCCHHHHH----HHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeE
Confidence 999988776555 6778999999999999999999999999999998777778889999999999999999999999
Q ss_pred eeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeec
Q 001965 844 MEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIV 923 (989)
Q Consensus 844 lEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~v 923 (989)
|||||.|+|+||.+++|+||++|++|||+|++++. ++++++|+|++|++|||||+++||++|||+|+|+|.|+||++|
T Consensus 622 lEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~--~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~v 699 (720)
T TIGR00490 622 LEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQ--EGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELV 699 (720)
T ss_pred ecceEEEEEEccHHHHhHHHHHHhhCCceeeeecc--CCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccC
Confidence 99999999999999999999999999999998654 3347999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCCChhhHHHHHHHHHHhccCCCCC
Q 001965 924 PGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED 962 (989)
Q Consensus 924 p~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl~~~ 962 (989)
|+ ++|+++|.++||||||+++
T Consensus 700 p~------------------~~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 700 PQ------------------NLQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred CH------------------HHHHHHHHHHHhhcCCCCC
Confidence 84 6899999999999999874
No 9
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.7e-113 Score=1051.86 Aligned_cols=663 Identities=27% Similarity=0.370 Sum_probs=564.1
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+++||||+|+||+|||||||+++|++.++.+.+.|.+..+ .+++|+.++|++||+|++++.+++.| +++.++||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~-~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~li 78 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDG-AATMDWMEQEQERGITITSAATTCFW-----KGHRINII 78 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC-ccccCCChhHhhcCCCccceeEEEEE-----CCEEEEEE
Confidence 5789999999999999999999999999988777766654 78999999999999999999999999 78899999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+||||+...+ +..+++
T Consensus 79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-----------~~~~~~ 147 (691)
T PRK12739 79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-----------FFRSVE 147 (691)
T ss_pred cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998532 345778
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
++++.+... ..+.+.|+ |+..+ |.|+ +|+..+..++||+.. .++++...+
T Consensus 148 ~i~~~l~~~-----~~~~~iPi-------s~~~~--------------f~g~-vd~~~~~~~~~~~~~---~~~~~~~~~ 197 (691)
T PRK12739 148 QIKDRLGAN-----AVPIQLPI-------GAEDD--------------FKGV-IDLIKMKAIIWDDET---LGAKYEEED 197 (691)
T ss_pred HHHHHhCCC-----ceeEEecc-------ccccc--------------ceEE-EEcchhhhhhccCCC---CCCeeEEcC
Confidence 888887642 22344464 22221 4455 899999999998752 234555555
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHH
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTD 448 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld 448 (989)
.+. .+.+|+++++++++++++..+++.|++||+ +..++.++++..++..+. .++|+|+|++ +.|||
T Consensus 198 ~~~----~~~~~~~~~~~~l~e~v~e~dd~lle~yl~--~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 271 (691)
T PRK12739 198 IPA----DLKEKAEEYREKLIEAVAEVDEELMEKYLE--GEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLD 271 (691)
T ss_pred CCH----HHHHHHHHHHHHHHHhhhhcCHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHH
Confidence 443 478999999999999998888888899998 467999999888887653 6677777763 78999
Q ss_pred HHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccC
Q 001965 449 MLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGE 528 (989)
Q Consensus 449 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~ 528 (989)
+|++++|||.+++..+....+++ ...+++||+++||+++|||++++++.| .++|+|||||+|++||.|++...
T Consensus 272 ~I~~~lPsP~~~~~~~~~~~~~~------~~~~~~~~~~~pl~a~VfK~~~d~~~G-~i~~~RV~sGtL~~g~~v~~~~~ 344 (691)
T PRK12739 272 AVVDYLPSPLDVPAIKGINPDTE------EEIERPASDDEPFAALAFKIMTDPFVG-RLTFFRVYSGVLESGSYVLNTTK 344 (691)
T ss_pred HHHHHCCChhhccccccccCCCC------cceeeccCCCCCeEEEEEEeeeCCCCC-eEEEEEEeeeEEcCCCEEEeCCC
Confidence 99999999998776555332221 357789999999999999999999865 49999999999999999986543
Q ss_pred CCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEe
Q 001965 529 GYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTAT 608 (989)
Q Consensus 529 ~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaI 608 (989)
+ +.++|++||.++|++..++++++|||||+|.|++++.+ ++||++ ...+..++++.+ ++|+++++|
T Consensus 345 ~---------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~-gdtl~~---~~~~~~l~~~~~-~~Pv~~~ai 410 (691)
T PRK12739 345 G---------KKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTT-GDTLCD---EKAPIILESMEF-PEPVISLAV 410 (691)
T ss_pred C---------ceEEecceEEEecCCcccccccCCCCEEEEeCCCcccC-CCEEeC---CCCccccCCCCC-CCceEEEEE
Confidence 3 46789999999999999999999999999999998755 789987 344567888886 799999999
Q ss_pred eeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeecccc
Q 001965 609 EPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSS 687 (989)
Q Consensus 609 eP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~ 687 (989)
||.+++|++||.+||++|.++||++.++. +||||++|+|+||||||||++||+++|+ ++|++|+|+|+|||||.+++.
T Consensus 411 ep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~-vev~~s~p~V~yrEti~~~~~ 489 (691)
T PRK12739 411 EPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFK-VEANVGAPQVAYRETITKSVE 489 (691)
T ss_pred EECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhC-CeeEecCCEEEEeeccCCccc
Confidence 99999999999999999999999999987 7899999999999999999999999996 999999999999999998765
Q ss_pred ceeee--ec--CCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEec
Q 001965 688 MKCFA--ET--PNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLD 763 (989)
Q Consensus 688 ~~~~a--~t--~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d 763 (989)
..... ++ ..+.+.++++++|++++. .+.|.+
T Consensus 490 ~~~~~~~~s~g~~~~~~v~l~~~P~~~~~---------------------------------------------~~~~~~ 524 (691)
T PRK12739 490 AEGKYKKQSGGRGQYGDVWIEFEPNEEGK---------------------------------------------GFEFVN 524 (691)
T ss_pred ccceeccccCCCCceeEEEEEEEECCCCC---------------------------------------------CcEEEE
Confidence 32111 11 123467777777776431 245666
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCee
Q 001965 764 DTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRL 843 (989)
Q Consensus 764 ~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prL 843 (989)
++.++.+|++ ++++|++||+|||++||||||||+||+|+|+|+.+++.... .+++.+|+|+||++||++|.|+|
T Consensus 525 ~i~~g~~~~~----~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~--~~~~~~a~~~a~~~a~~~a~p~L 598 (691)
T PRK12739 525 KIVGGVIPKE----YIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSS--ELAFKIAASMALKEAAKKAGPVI 598 (691)
T ss_pred eccCCcCcHH----HHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCc--HHHHHHHHHHHHHHHHHhCCCee
Confidence 6666667654 45678899999999999999999999999999998754333 35677899999999999999999
Q ss_pred eeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeec
Q 001965 844 MEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIV 923 (989)
Q Consensus 844 lEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~v 923 (989)
|||||.|+|+||++++|+||++|++|||+|+++++..| .++|+|++|++|+|||+++||++|+|+|+|++.|+||++|
T Consensus 599 lEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v 676 (691)
T PRK12739 599 LEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEV 676 (691)
T ss_pred ecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceEC
Confidence 99999999999999999999999999999999887665 4789999999999999999999999999999999999999
Q ss_pred CCCC
Q 001965 924 PGDP 927 (989)
Q Consensus 924 p~dp 927 (989)
|++.
T Consensus 677 ~~~~ 680 (691)
T PRK12739 677 PKNI 680 (691)
T ss_pred CHHH
Confidence 9743
No 10
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=2.4e-112 Score=1041.01 Aligned_cols=663 Identities=25% Similarity=0.369 Sum_probs=561.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+++||||||+||+|||||||+++|++.+|.+.++|....+ ++++|+.+.|++||+|++++..++.| +++.+|||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~-~~~~D~~~~E~~rg~ti~~~~~~~~~-----~~~~~~li 80 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTCFW-----KDHRINII 80 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC-cccCCCCHHHHhCCCCEeccEEEEEE-----CCeEEEEE
Confidence 6789999999999999999999999999988777766655 78999999999999999999999998 67899999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+...+ +..+++
T Consensus 81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-----------~~~~~~ 149 (693)
T PRK00007 81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-----------FYRVVE 149 (693)
T ss_pred eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998532 334677
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
++++.+... ..+.+.|+ |+..+ |.|+ +|+..+..++|++. ..++++...+
T Consensus 150 ~i~~~l~~~-----~~~~~ipi-------sa~~~--------------f~g~-~d~~~~~~~~~~~~---~~~~~~~~~~ 199 (693)
T PRK00007 150 QIKDRLGAN-----PVPIQLPI-------GAEDD--------------FKGV-VDLVKMKAIIWNEA---DLGATFEYEE 199 (693)
T ss_pred HHHHHhCCC-----eeeEEecC-------ccCCc--------------ceEE-EEcceeeeeecccC---CCCCcceEcc
Confidence 777777642 22334454 44433 3344 78888899999852 3355565555
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHH
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTD 448 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld 448 (989)
.+. ...+++.++++++++.++..+++.+++||+ |+.+++++++..++.++. .++|+|||++ +.|||
T Consensus 200 ~~~----~~~~~~~~~~~~l~e~v~e~dd~lle~yle--~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 273 (693)
T PRK00007 200 IPA----DLKDKAEEYREKLIEAAAEADEELMEKYLE--GEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLD 273 (693)
T ss_pred CCH----HHHHHHHHHHHHHHHHHHccCHHHHHHHhC--cCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHH
Confidence 443 356789999999999988887888889998 689999999999887754 8899999986 88999
Q ss_pred HHHHhcCChhhhhhhcccccccCCC-CcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEcc
Q 001965 449 MLVKFIPSAKDAAARKVDHIYTGPK-NSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLG 527 (989)
Q Consensus 449 ~i~~~lPsP~e~~~~~~~~~~~g~~-~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg 527 (989)
+|++++|||.+++..+ +.. +.......+.||+++|++++|||+.++++.| .++|+|||||+|++||+|++..
T Consensus 274 ~I~~~lPsP~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G-~ia~~RV~sGtl~~g~~v~~~~ 346 (693)
T PRK00007 274 AVVDYLPSPLDVPAIK------GILPDGEEEEVERKASDDEPFSALAFKIMTDPFVG-KLTFFRVYSGVLESGSYVLNST 346 (693)
T ss_pred HHHHHCCChhhccccc------ccCCCccccceeecCCCCCCeEEEEEEeeecCCCC-cEEEEEEeeeEEcCCCEEEeCC
Confidence 9999999998765432 111 2223456789999999999999999999875 5999999999999999998643
Q ss_pred CCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEE
Q 001965 528 EGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTA 607 (989)
Q Consensus 528 ~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~va 607 (989)
.+ +.++|++|+.++|++..++++|+|||||+|.|++++.+ |+||++ ...+..++++.+ +.|+++++
T Consensus 347 ~~---------~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~-GdtL~~---~~~~~~l~~~~~-~~Pv~~~a 412 (693)
T PRK00007 347 KG---------KKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTT-GDTLCD---EKNPIILESMEF-PEPVISVA 412 (693)
T ss_pred CC---------ceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCc-CCEeeC---CCCccccCCCCC-CCceEEEE
Confidence 22 35799999999999999999999999999999988765 899987 344567788875 79999999
Q ss_pred eeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccc
Q 001965 608 TEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686 (989)
Q Consensus 608 IeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s 686 (989)
|||.+++|++||.+||++|.++||++.+.. +||||++|+|+||||||||++||+++|+ +++++|+|+|+|||||.+.+
T Consensus 413 Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~-vev~~s~p~V~yrETi~~~~ 491 (693)
T PRK00007 413 VEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFK-VEANVGKPQVAYRETIRKKV 491 (693)
T ss_pred EEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhC-CeeEecCCEEEEeecccCcc
Confidence 999999999999999999999999999987 6899999999999999999999999996 99999999999999999876
Q ss_pred ccee--eeec-C-CCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEe
Q 001965 687 SMKC--FAET-P-NKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILL 762 (989)
Q Consensus 687 ~~~~--~a~t-~-nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~ 762 (989)
.... ..++ + .+++.++++++|++++. .+.|.
T Consensus 492 ~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~---------------------------------------------~~~f~ 526 (693)
T PRK00007 492 EVEGKFVKQSGGRGQYGHVVIEFEPNEPGK---------------------------------------------GYEFV 526 (693)
T ss_pred ccCcccccccCCCCceEEEEEEEEeCCCCC---------------------------------------------CcEEe
Confidence 5311 1111 1 12478999999987542 12333
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCe
Q 001965 763 DDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPR 842 (989)
Q Consensus 763 d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~pr 842 (989)
+.+.++.+|+++ +++|++||+||+++||||||||+||+|+|+|+.+++... ..+++.+|+|+||++||++|+|+
T Consensus 527 ~~i~~g~~~~~~----~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds--~~~~~~~a~~~a~~~a~~~a~p~ 600 (693)
T PRK00007 527 NKIVGGVIPKEY----IPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDS--SEMAFKIAGSMAFKEAAKKANPV 600 (693)
T ss_pred ecccCCcCcHHH----HHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCC--cHHHHHHHHHHHHHHHHHHCCCE
Confidence 444555566554 467889999999999999999999999999999875332 34567789999999999999999
Q ss_pred eeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceee
Q 001965 843 LMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAI 922 (989)
Q Consensus 843 LlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~ 922 (989)
||||||+|+|+||++++|+||++|++|||+|.++++..+ .+.|+|.+|++|+|||+++||++|+|+|+|++.|+||++
T Consensus 601 LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~ 678 (693)
T PRK00007 601 LLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGG--AKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEE 678 (693)
T ss_pred EecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccCC--cEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeE
Confidence 999999999999999999999999999999998776544 689999999999999999999999999999999999999
Q ss_pred cCCCC
Q 001965 923 VPGDP 927 (989)
Q Consensus 923 vp~dp 927 (989)
||++.
T Consensus 679 v~~~~ 683 (693)
T PRK00007 679 VPKNV 683 (693)
T ss_pred CCHHH
Confidence 99754
No 11
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=7.7e-110 Score=1022.68 Aligned_cols=667 Identities=26% Similarity=0.391 Sum_probs=574.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
++++|||+|+||.|||||||+++|++.+|.+.+.|....+ .+++|+.+.|++||+|+.++..++.| +++.++||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~-~~~~d~~~~e~~r~~ti~~~~~~~~~-----~~~~i~li 78 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG-TTVTDWMPQEQERGITIESAATSCDW-----DNHRINLI 78 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC-cccCCCCHHHHhcCCCcccceEEEEE-----CCEEEEEE
Confidence 5689999999999999999999999999988766655444 67899999999999999999999988 67899999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++..+++.+|++|+|+|+.+|++.+++.+|+++...++|+++|+||+|+.+.+ +.++++
T Consensus 79 DtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~-----------~~~~~~ 147 (687)
T PRK13351 79 DTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGAD-----------LFKVLE 147 (687)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCC-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998755 567999
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
+++..++. ...+.+.|+.+|..|. |+ +|+.....+.|+.. ..++.+...+
T Consensus 148 ~i~~~l~~-----~~~~~~~P~~~~~~~~---------------------g~-id~~~~~~~~~~~~---~~~~~~~~~~ 197 (687)
T PRK13351 148 DIEERFGK-----RPLPLQLPIGSEDGFE---------------------GV-VDLITEPELHFSEG---DGGSTVEEGP 197 (687)
T ss_pred HHHHHHCC-----CeEEEEeccccCCceE---------------------EE-EECccceEEecccC---CCCCceEEcc
Confidence 99999876 3457789998876653 22 66666777788642 2345555544
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHH
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTD 448 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld 448 (989)
++ .+|.+++++++++++++++..+++.|++||+ +..++.++++.++++++. .++|+|||++ +.|||
T Consensus 198 ~~----~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~--~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd 271 (687)
T PRK13351 198 IP----EELLEEVEEAREKLIEALAEFDDELLELYLE--GEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLD 271 (687)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHH
Confidence 43 3699999999999999988877777889997 689999999999999876 6999999995 78999
Q ss_pred HHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccC
Q 001965 449 MLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGE 528 (989)
Q Consensus 449 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~ 528 (989)
+|++++|+|.+++..+..+ +. . ....+.||+++|++++|||++++++.| .++|+|||||+|++||+|++.+.
T Consensus 272 ~I~~~lPsP~~~~~~~~~~---~~--~--~~~~~~~~~~~pl~a~VfK~~~d~~~G-~i~~~RV~sGtl~~g~~v~~~~~ 343 (687)
T PRK13351 272 AVVDYLPSPLEVPPPRGSK---DN--G--KPVKVDPDPEKPLLALVFKVQYDPYAG-KLTYLRVYSGTLRAGSQLYNGTG 343 (687)
T ss_pred HHHHHCCChhhcccccccC---CC--C--CceeecCCCCCCeEEEEEEeeecCCCc-eEEEEEEeEEEEcCCCEEEeCCC
Confidence 9999999998766554432 10 0 123478999999999999999999874 59999999999999999999875
Q ss_pred CCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEe
Q 001965 529 GYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTAT 608 (989)
Q Consensus 529 ~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaI 608 (989)
+ ..++|++||.++|++..++++|+||||++|.|++++.+ |+||++. .....++++. .++|+++++|
T Consensus 344 ~---------~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~-gdtl~~~---~~~~~~~~~~-~~~pv~~~~I 409 (687)
T PRK13351 344 G---------KREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELET-GDTLHDS---ADPVLLELLT-FPEPVVSLAV 409 (687)
T ss_pred C---------CceEeeeEEEEccCCeeECCccCCCCEEEEECcccCcc-CCEEeCC---CCccccCCCC-CCCccEEEEE
Confidence 4 35789999999999999999999999999999998866 8999873 3345667776 4899999999
Q ss_pred eeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeecccc
Q 001965 609 EPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSS 687 (989)
Q Consensus 609 eP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~ 687 (989)
||.+++|++||.+||++|.++||++.++. +||||++|+|+||||||+|++||+++|+ +++++|+|.|+|||||.+.+.
T Consensus 410 ep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~-vev~~~~p~V~y~Eti~~~~~ 488 (687)
T PRK13351 410 EPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFK-LEVNTGKPQVAYRETIRKMAE 488 (687)
T ss_pred EECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhC-CceEecCCeEEEEeecccccc
Confidence 99999999999999999999999999986 6899999999999999999999999997 999999999999999998765
Q ss_pred ceee--eec--CCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEec
Q 001965 688 MKCF--AET--PNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLD 763 (989)
Q Consensus 688 ~~~~--a~t--~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d 763 (989)
.... .++ ..+++.|+++++|++++. | ++|.+
T Consensus 489 ~~~~~~~~~~~~~~~~~v~~~~ep~~~~~--------------------------------------------g-~~~~~ 523 (687)
T PRK13351 489 GVYRHKKQFGGKGQFGEVHLRVEPLERGA--------------------------------------------G-FIFVS 523 (687)
T ss_pred ccceeeeccCCCceEEEEEEEEEECCCCC--------------------------------------------C-cEEee
Confidence 3221 111 123489999999987542 1 34444
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCee
Q 001965 764 DTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRL 843 (989)
Q Consensus 764 ~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prL 843 (989)
.+.++.+|++ ++++|.+||+|||++||||||||+||+|+|+|+.++++..+ .+|+++|+|+||++||++|+|+|
T Consensus 524 ~~~~~~~~~~----~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a~~~a~~~a~~~L 597 (687)
T PRK13351 524 KVVGGAIPEE----LIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSS--ESAFKAAARKAFLEAFRKANPVL 597 (687)
T ss_pred cccCCcCCHH----HHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCCC--HHHHHHHHHHHHHHHHHhCCCee
Confidence 4455556654 55688899999999999999999999999999999876553 58999999999999999999999
Q ss_pred eeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeec
Q 001965 844 MEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIV 923 (989)
Q Consensus 844 lEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~v 923 (989)
|||||+|+|+||++++|+|+++|++|||+|+++++..++. +.|+|++|++|+|||+++||++|+|+|+|++.|+||++|
T Consensus 598 lEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~-~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v 676 (687)
T PRK13351 598 LEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGE-VLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPV 676 (687)
T ss_pred ecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcE-EEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeC
Confidence 9999999999999999999999999999999988766653 349999999999999999999999999999999999999
Q ss_pred CCCCcccc
Q 001965 924 PGDPLDKS 931 (989)
Q Consensus 924 p~dp~~~~ 931 (989)
|++++++.
T Consensus 677 ~~~~~~~~ 684 (687)
T PRK13351 677 PPAVQKKV 684 (687)
T ss_pred CHHHHHHH
Confidence 99877654
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=3.5e-109 Score=1014.51 Aligned_cols=664 Identities=25% Similarity=0.341 Sum_probs=556.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+++||||+|+||+|||||||+++|++.++.+.+.|+...+ .+++|+.+.|++||+|+++...++.| +++.++||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g-~~~~D~~~~e~~rgiti~~~~~~~~~-----~~~~i~li 80 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG-AATMDWMEQEKERGITITSAATTVFW-----KGHRINII 80 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC-ccccCCCHHHHhcCCCEecceEEEEE-----CCeEEEEE
Confidence 6789999999999999999999999999988777766554 68899999999999999999999998 67899999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++..+++.+|+||+|||+.+|++.+|+.+|+++...++|+++|+||+|+...+ +..+++
T Consensus 81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-----------~~~~~~ 149 (689)
T TIGR00484 81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-----------FLRVVN 149 (689)
T ss_pred ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998533 345778
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccC-CCCeEEeC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHP-DTRVFKKK 375 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~-~~~~~~~~ 375 (989)
+++..++. ...+.+.|+ |+..+ |.|+ +|+...... ||+. .+..+...
T Consensus 150 ~i~~~l~~-----~~~~~~ipi-------s~~~~--------------~~~~-id~~~~~~~-----~~~~~~~~~~~~~ 197 (689)
T TIGR00484 150 QIKQRLGA-----NAVPIQLPI-------GAEDN--------------FIGV-IDLVEMKAY-----FFNGDKGTKAIEK 197 (689)
T ss_pred HHHHHhCC-----CceeEEecc-------ccCCC--------------ceEE-EECccceEE-----ecccCCCceeeec
Confidence 88877764 233455564 33333 3344 666655433 4443 23444444
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHH--HhhhcccccCh------HHHH
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLL--RLACSSVFGSA------SGFT 447 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll--~~v~~~~~g~~------~~ll 447 (989)
+.+ ..+.+++.++++++++++...+++.|++||+ |..++.++++..++..+ ..++|+|+|++ +.||
T Consensus 198 ~~~----~~~~~~~~~~~~~l~e~v~e~dd~lle~yle--~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LL 271 (689)
T TIGR00484 198 EIP----SDLLEQAKELRENLVEAVAEFDEELMEKYLE--GEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLL 271 (689)
T ss_pred cCC----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHH
Confidence 444 3478899999999999888777777889998 67899999988887765 38899999985 8999
Q ss_pred HHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEcc
Q 001965 448 DMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLG 527 (989)
Q Consensus 448 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg 527 (989)
|+|++++|||.+++..+... .+.....++.||+++||+|+|||+.++++.| +++|+|||||+|++||+|++..
T Consensus 272 d~I~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G-~i~~~RV~sGtL~~g~~v~~~~ 344 (689)
T TIGR00484 272 DAVVDYLPSPTDVPAIKGID------PDTEKEIERKASDDEPFSALAFKVATDPFVG-QLTFVRVYSGVLKSGSYVKNSR 344 (689)
T ss_pred HHHHHHCCCchhcccccccC------CCCCceeeecCCCCCceEEEEEEeeecCCCC-eEEEEEEEEeEEcCCCEEEeCC
Confidence 99999999998755432211 1112356789999999999999999999875 6999999999999999999754
Q ss_pred CCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEE
Q 001965 528 EGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTA 607 (989)
Q Consensus 528 ~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~va 607 (989)
.+ ..++|++|+.++|++..++++++|||||+|.|++++.+ |+||++ ......++++.+ ++|+++++
T Consensus 345 ~~---------~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~-gdtl~~---~~~~~~~~~~~~-~~Pvl~~~ 410 (689)
T TIGR00484 345 KN---------KKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTT-GDTLCD---PKIDVILERMEF-PEPVISLA 410 (689)
T ss_pred CC---------ceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCC-CCEEeC---CCCccccCCCCC-CCceEEEE
Confidence 33 35789999999999999999999999999999998754 899987 344566778875 89999999
Q ss_pred eeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccc
Q 001965 608 TEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686 (989)
Q Consensus 608 IeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s 686 (989)
|+|.+++|++||.+||++|.++||++++++ +||||++|+|+||||||||++||+++|+ +++++++|.|+|||||.+++
T Consensus 411 i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~-vev~~~~p~V~yrEti~~~~ 489 (689)
T TIGR00484 411 VEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFK-VEANVGAPQVAYRETIRSKV 489 (689)
T ss_pred EEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhC-CeeEecCCEEEEeecccCcc
Confidence 999999999999999999999999999987 6899999999999999999999999996 99999999999999999876
Q ss_pred cceee--eec--CCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEe
Q 001965 687 SMKCF--AET--PNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILL 762 (989)
Q Consensus 687 ~~~~~--a~t--~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~ 762 (989)
..... .++ ...++.|++++||++++ | +.|.
T Consensus 490 ~~~~~~~~~~~~~~~~~~v~l~~eP~~~~-------g---------------------------------------~~~~ 523 (689)
T TIGR00484 490 EVEGKHAKQSGGRGQYGHVKIRFEPLEPK-------G---------------------------------------YEFV 523 (689)
T ss_pred ccccccccccCCCCceEEEEEEEEECCCC-------C---------------------------------------cEEE
Confidence 53211 111 11347999999998752 1 1122
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCe
Q 001965 763 DDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPR 842 (989)
Q Consensus 763 d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~pr 842 (989)
++..++.+|++|+ ++|.+||+||+++||||||||+||+|+|+|+.+++..... +++.+++|+||++||++|+|+
T Consensus 524 ~~i~~g~~~~~~~----~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~--~~~~~a~~~a~~~a~~~a~~~ 597 (689)
T TIGR00484 524 NEIKGGVIPREYI----PAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSE--MAFKLAASLAFKEAGKKANPV 597 (689)
T ss_pred EeccCCcCCHHHH----HHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCH--HHHHHHHHHHHHHHHHhCCCe
Confidence 3333444566554 5678999999999999999999999999999987544333 345579999999999999999
Q ss_pred eeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceee
Q 001965 843 LMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAI 922 (989)
Q Consensus 843 LlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~ 922 (989)
||||||+|+|+||++++|+||++|++|||+|.++++.. +++.|+|++|++|+|||+++||++|+|+|+|++.|+||++
T Consensus 598 LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~ 675 (689)
T TIGR00484 598 LLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGE 675 (689)
T ss_pred eecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEecccee
Confidence 99999999999999999999999999999999877643 4799999999999999999999999999999999999999
Q ss_pred cCCCCcccc
Q 001965 923 VPGDPLDKS 931 (989)
Q Consensus 923 vp~dp~~~~ 931 (989)
||++++++.
T Consensus 676 v~~~~~~~i 684 (689)
T TIGR00484 676 VPSSVANEI 684 (689)
T ss_pred CCHHHHHHH
Confidence 998776543
No 13
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-110 Score=936.15 Aligned_cols=664 Identities=23% Similarity=0.363 Sum_probs=558.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+++|||+|++|.++|||||+++.++.+|.+..+|.+..+ ...+|+.+.|++|||||++++.++.| +++.+||||
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w-----~~~~iNiID 110 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTW-----RDYRINIID 110 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeee-----ccceeEEec
Confidence 579999999999999999999999999999888887766 77899999999999999999999999 689999999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHH
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEV 297 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~ 297 (989)
||||+||.-||.+|+|+.||||+|+|++.||+.||+.+|+|+.+.++|.|.|+|||||.+.. ..+++++
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~-----------~~~~l~~ 179 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGAS-----------PFRTLNQ 179 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCC-----------hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865 4568899
Q ss_pred HHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCC
Q 001965 298 INNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPP 377 (989)
Q Consensus 298 in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~ 377 (989)
+++.+.. .....+.|++-+ ..|.|+ +|+...++.+|.. ..+..+...++
T Consensus 180 i~~kl~~-----~~a~vqiPig~e---------------------~~f~Gv-vDlv~~kai~~~g----~~g~~i~~~eI 228 (721)
T KOG0465|consen 180 IRTKLNH-----KPAVVQIPIGSE---------------------SNFKGV-VDLVNGKAIYWDG----ENGEIVRKDEI 228 (721)
T ss_pred HHhhcCC-----chheeEcccccc---------------------ccchhH-HhhhhceEEEEcC----CCCceeEeccC
Confidence 9999975 346778887432 137788 9999998888841 23445556677
Q ss_pred CCCcchHHHHhhhhHHHHHHHHHhcCChHHHHH-HHHhcCCCCCHHHHHhcchHHH--HhhhcccccC------hHHHHH
Q 001965 378 ASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEA-TLAELGVTLSNATYRLNVRPLL--RLACSSVFGS------ASGFTD 448 (989)
Q Consensus 378 ~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~-~l~~~~~~l~~~el~~~~~~ll--~~v~~~~~g~------~~~lld 448 (989)
|++.. +...|- ...+.+++++.||+|.+ ||++ ..++.++|+..+|+.. +.+.|+++|+ +|+|||
T Consensus 229 P~~l~----~~~~e~-R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLD 301 (721)
T KOG0465|consen 229 PEDLE----ELAEEK-RQALIETLADVDETLAEMFLEE--EEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLD 301 (721)
T ss_pred CHHHH----HHHHHH-HHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHH
Confidence 76532 233332 33444567788888865 6774 6799999999998873 4777777777 489999
Q ss_pred HHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCC-CeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEcc
Q 001965 449 MLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSG-PLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLG 527 (989)
Q Consensus 449 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~-pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg 527 (989)
+|++|||||.|...+.+.+ .. +++ .+.......++ ||++.+||+...++ |.+.|+|||+|+|++|+.|++..
T Consensus 302 AVvdYLPsP~Ev~n~a~~k--e~--~~~-ekv~l~~~~d~~Pfv~LAFKle~g~f--GqLTyvRvYqG~L~kG~~iyN~r 374 (721)
T KOG0465|consen 302 AVVDYLPSPSEVENYALNK--ET--NSK-EKVTLSPSRDKDPFVALAFKLEEGRF--GQLTYVRVYQGTLSKGDTIYNVR 374 (721)
T ss_pred HHHHhCCChhhhccccccc--CC--CCc-cceEeccCCCCCceeeeEEEeeecCc--cceEEEEEeeeeecCCcEEEecC
Confidence 9999999999988776652 11 111 13344444444 99999999999998 34999999999999999999987
Q ss_pred CCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEE
Q 001965 528 EGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTA 607 (989)
Q Consensus 528 ~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~va 607 (989)
++ +++|+++|+.|++...++|++|.|||||++.|+| +.+ |+|+++.. .....+..+. .|.||+.+|
T Consensus 375 tg---------KKvrv~RL~rmHa~~medV~~v~AG~I~alfGid-cas-GDTftd~~--~~~~~m~si~-vPePVis~a 440 (721)
T KOG0465|consen 375 TG---------KKVRVGRLVRMHANDMEDVNEVLAGDICALFGID-CAS-GDTFTDKQ--NLALSMESIH-IPEPVISVA 440 (721)
T ss_pred CC---------ceeEhHHHhHhcccccchhhhhhccceeeeeccc-ccc-CceeccCc--cccceeeeee-cCCCeeEEE
Confidence 76 6899999999999999999999999999999995 445 89999841 2345566665 699999999
Q ss_pred eeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccc
Q 001965 608 TEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686 (989)
Q Consensus 608 IeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s 686 (989)
|+|.+.+|.++|.+||.++.+|||++++.. .|+||+||+||||||||+..+||+++|+ +++.+++|+|+|||||+.+.
T Consensus 441 ikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~-~~~~~Gkp~VayRETi~~~~ 519 (721)
T KOG0465|consen 441 IKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYK-VDAELGKPQVAYRETITSPV 519 (721)
T ss_pred ecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhC-CccccCCceeeehhhcCCcc
Confidence 999999999999999999999999999865 8999999999999999999999999997 99999999999999999777
Q ss_pred cceeeee----cCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCc-eE
Q 001965 687 SMKCFAE----TPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPN-IL 761 (989)
Q Consensus 687 ~~~~~a~----t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~n-il 761 (989)
.+...++ +..+.+++.-.+|||+.+.. .+ .|
T Consensus 520 ~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~--------------------------------------------~~~eF 555 (721)
T KOG0465|consen 520 EFDYTHKKQSGGAGQYGKVEGVIEPLPPGSN--------------------------------------------EKFEF 555 (721)
T ss_pred cceeeeccccCCCccccceeeEEeecCCCCC--------------------------------------------ceEEE
Confidence 6543321 11122577777888775431 22 46
Q ss_pred eccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCC
Q 001965 762 LDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATP 841 (989)
Q Consensus 762 ~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~p 841 (989)
.+.+.++.+|++|+++++ +||..++..|||.|.|+.|++|.|.|+.++.....- -.++-|++.|+++||.+|+|
T Consensus 556 ~~~~~g~~~P~~f~pa~e----kg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~e--laf~~at~~a~r~a~~~a~p 629 (721)
T KOG0465|consen 556 SDEIVGGNVPKQFIPAVE----KGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSE--LAFMKATRNAFREAFKRAPP 629 (721)
T ss_pred EecccCCCCchhHHHHHH----HHHHHHHhcCCccCCcccceEEEEecCCcCcccccH--HHHHHHHHHHHHHHHHhCCc
Confidence 677788889999998766 999999999999999999999999999875322111 12355899999999999999
Q ss_pred eeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeecccee
Q 001965 842 RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWA 921 (989)
Q Consensus 842 rLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~ 921 (989)
+||||||.|+|++|+++.|.|+++|++|+|.|.+.+..++ .++|+|.+|+.+||||+++|||+|+|+|.|+|+|++|+
T Consensus 630 ~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~~--~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~ 707 (721)
T KOG0465|consen 630 RILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSED--YKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYS 707 (721)
T ss_pred ceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCCc--eEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccC
Confidence 9999999999999999999999999999999998765444 79999999999999999999999999999999999999
Q ss_pred ecCCCCccc
Q 001965 922 IVPGDPLDK 930 (989)
Q Consensus 922 ~vp~dp~~~ 930 (989)
++|.+.++.
T Consensus 708 p~~~~vq~~ 716 (721)
T KOG0465|consen 708 PVPPDVQDQ 716 (721)
T ss_pred CCchHHHHH
Confidence 999877653
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=2.1e-101 Score=946.58 Aligned_cols=653 Identities=26% Similarity=0.388 Sum_probs=549.8
Q ss_pred EcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccch
Q 001965 146 VGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFS 225 (989)
Q Consensus 146 iGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~ 225 (989)
+||+|||||||+++|++.+|.+.+.|....+ .+++|+.+.|++||+|+.+...++.| +++.++|||||||.+|.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~-~~~~d~~~~e~~rgiTi~~~~~~~~~-----~~~~i~liDtPG~~~~~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDG-TTTMDFMPEERERGISITSAATTCEW-----KGHKINLIDTPGHVDFT 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCC-cccCCCChHHHhcCCCeeeceEEEEE-----CCEEEEEEECCCcHHHH
Confidence 6999999999999999999998776654443 68899999999999999999999988 67899999999999999
Q ss_pred HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHHhhhh
Q 001965 226 DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAA 305 (989)
Q Consensus 226 ~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~ 305 (989)
.++.++++.+|++|+|||+.+|++.++..+|+.+...++|+++|+||+|+...+ +..+++++++.++.
T Consensus 75 ~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~-----------~~~~~~~l~~~l~~- 142 (668)
T PRK12740 75 GEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGAD-----------FFRVLAQLQEKLGA- 142 (668)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-----------HHHHHHHHHHHHCC-
Confidence 999999999999999999999999999999999999999999999999998533 45577888887764
Q ss_pred cccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCCcchHH
Q 001965 306 STTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGGERSF 385 (989)
Q Consensus 306 ~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~f 385 (989)
...+.+.|+.+|..|. || +|+.... .| ||+ +++.+...+.+ ..+
T Consensus 143 ----~~~~~~~p~~~~~~~~----~~------------------id~~~~~--~~---~~~-~~~~~~~~~~~----~~~ 186 (668)
T PRK12740 143 ----PVVPLQLPIGEGDDFT----GV------------------VDLLSMK--AY---RYD-EGGPSEEIEIP----AEL 186 (668)
T ss_pred ----CceeEEecccCCCCce----EE------------------EECccce--EE---Eec-CCCeeEEecCC----HHH
Confidence 2356778987765442 22 4443322 22 555 56666655544 347
Q ss_pred HHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHHHHHHhcCCh
Q 001965 386 VQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTDMLVKFIPSA 457 (989)
Q Consensus 386 v~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld~i~~~lPsP 457 (989)
.++++++++++++++...+++.|++||+ ++.++.++++..++.++. .++|+|+|++ +.|||+|++++|||
T Consensus 187 ~~~~~~~~~~l~e~~~~~d~~~le~~l~--~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp 264 (668)
T PRK12740 187 LDRAEEAREELLEALAEFDDELMEKYLE--GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSP 264 (668)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCCh
Confidence 8899999999999988877778899998 478999999999888765 8999999994 68999999999999
Q ss_pred hhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCC
Q 001965 458 KDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEED 537 (989)
Q Consensus 458 ~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~ 537 (989)
.+++.. .+.. .....+..||+++|++++|||++++++.| +++|+|||||+|++||+|++.+.+
T Consensus 265 ~~~~~~------~~~~--~~~~~~~~~~~~~~l~a~v~k~~~~~~~G-~i~~~RV~sG~L~~g~~v~~~~~~-------- 327 (668)
T PRK12740 265 LEVPPV------DGED--GEEGAELAPDPDGPLVALVFKTMDDPFVG-KLSLVRVYSGTLKKGDTLYNSGTG-------- 327 (668)
T ss_pred hhcccc------cCCC--CccccccccCCCCCeEEEEEEeeecCCCC-cEEEEEEeeeEEcCCCEEEeCCCC--------
Confidence 875542 1111 12345678999999999999999998764 699999999999999999997643
Q ss_pred ceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEeeeCCCCChh
Q 001965 538 MTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELP 617 (989)
Q Consensus 538 ~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~dl~ 617 (989)
+.++|++|+.++|++.+++++|+||||++|.|++.. .+|+||++. .....++++.+ ++|+++++|+|.+++|.+
T Consensus 328 -~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~---~~~~~~~~~~~-~~P~~~~~i~p~~~~d~~ 401 (668)
T PRK12740 328 -KKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA-ATGDTLCDK---GDPILLEPMEF-PEPVISLAIEPKDKGDEE 401 (668)
T ss_pred -CcEEecceeeecCCCccccCccCCCCEEEEeccCcc-CCCCEEeCC---CCccccCCCCC-CCcceEEEEEECCcchHH
Confidence 357899999999999999999999999999999865 458999873 33557788875 699999999999999999
Q ss_pred HHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccceeee--ec
Q 001965 618 KMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFA--ET 694 (989)
Q Consensus 618 kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~~~~a--~t 694 (989)
+|.+||++|.++||++.+.. ++|||++|.|+||||||+|++||+++|+ +++++++|.|+|||||.+++...... .+
T Consensus 402 ~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~-~~v~~~~p~V~yrEti~~~~~~~~~~~~~~ 480 (668)
T PRK12740 402 KLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYG-VEVETGPPQVPYRETIRKKAEGHGRHKKQS 480 (668)
T ss_pred HHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhC-ceeEecCCeeEEeeccCCCccccceecccc
Confidence 99999999999999999987 6899999999999999999999999997 99999999999999999876532111 11
Q ss_pred C-C-CceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCCchhhH
Q 001965 695 P-N-KKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDK 772 (989)
Q Consensus 695 ~-n-k~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~v~k 772 (989)
+ + ..+.|++++||++.+.+ | .|.+.+.++.+++
T Consensus 481 ~~~~~~~~v~l~~ep~~~~~~-----------------------------------~----------~f~~~~~~~~~~~ 515 (668)
T PRK12740 481 GGHGQFGDVWLEVEPLPRGEG-----------------------------------F----------EFVDKVVGGAVPR 515 (668)
T ss_pred CCCCceEEEEEEEEECCCCCc-----------------------------------e----------EEeecccCCCccH
Confidence 1 1 23689999999986521 1 1222233344555
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEE
Q 001965 773 SLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEI 852 (989)
Q Consensus 773 ~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI 852 (989)
++ +++|.+||+||+++||||||||+||+|+|+|+.+++.. .+.+++.+++|+||++||++|+|+||||||.|+|
T Consensus 516 ~~----~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~~--s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI 589 (668)
T PRK12740 516 QY----IPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSVD--SSEMAFKIAARLAFREALPKAKPVLLEPIMKVEV 589 (668)
T ss_pred HH----HHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccCC--CCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEE
Confidence 44 46888999999999999999999999999999986533 2356788999999999999999999999999999
Q ss_pred EecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecCCCCcccc
Q 001965 853 QTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 931 (989)
Q Consensus 853 ~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp~dp~~~~ 931 (989)
+||++++|.|+++|++|||+|+++++.+++ ++|+|++|++|+|||+++||++|+|+|+|++.|+||++||++++++.
T Consensus 590 ~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~ 666 (668)
T PRK12740 590 SVPEEFVGDVIGDLSSRRGRILGMESRGGG--DVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKV 666 (668)
T ss_pred EechhhhhhHHHHHHhCCCeEeccccCCCC--EEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHHHHHH
Confidence 999999999999999999999998876653 99999999999999999999999999999999999999998776543
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-86 Score=710.57 Aligned_cols=666 Identities=21% Similarity=0.321 Sum_probs=530.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+.+||||+|++|+++||||.++++++.+|.+...|.+.+| .+++|+...|++|||||.++.++|.| ++|.+|+|
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddg-dtvtdfla~erergitiqsaav~fdw-----kg~rinli 107 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDG-DTVTDFLAIERERGITIQSAAVNFDW-----KGHRINLI 107 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCC-chHHHHHHHHHhcCceeeeeeeeccc-----ccceEeee
Confidence 3679999999999999999999999999999888888876 77899999999999999999999988 89999999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||+||.-|+.+++|+.||+|.|+|++.||++||..+|+++.+.++|.++|+||||++.++ ++..++
T Consensus 108 dtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~an-----------fe~avd 176 (753)
T KOG0464|consen 108 DTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAAN-----------FENAVD 176 (753)
T ss_pred cCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhh-----------hhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999654 456788
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
.|++.++. .....+.|+..+-.|. .|+ +|+..-.+.+|.-+- ..++.|..+|
T Consensus 177 si~ekl~a-----k~l~l~lpi~eak~fn--------------------kg~-ldil~ke~l~~ncns--ndgkd~e~~p 228 (753)
T KOG0464|consen 177 SIEEKLGA-----KALKLQLPIGEAKGFN--------------------KGF-LDILHKEKLLGNCNS--NDGKDFENKP 228 (753)
T ss_pred HHHHHhCC-----ceEEEEeccccccccc--------------------chH-HHHHHHhhccCCCCC--CccccccCCc
Confidence 88988876 3466788987764331 344 777777777884321 2345677777
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHH-HHHHHhcCC---CCCHHHHHhcchHHH--HhhhcccccC------hH
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSV-EATLAELGV---TLSNATYRLNVRPLL--RLACSSVFGS------AS 444 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L-~~~l~~~~~---~l~~~el~~~~~~ll--~~v~~~~~g~------~~ 444 (989)
.-+...+...+..-|.--.++.++ ++.++.+ .++|+++.. .+..++++..++.+. +.+.+..+|+ .+
T Consensus 229 lle~ndpel~e~~ae~knal~~ql-ad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiq 307 (753)
T KOG0464|consen 229 LLEKNDPELAEELAEAKNALCEQL-ADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQ 307 (753)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCcc
Confidence 555555666666666555555554 4445444 467777644 478888988888763 3555555555 48
Q ss_pred HHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEE
Q 001965 445 GFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVR 524 (989)
Q Consensus 445 ~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~ 524 (989)
+|||++.-|+|||.++. +.+-..|.. .+++..||+.++...| .++|.|||||+|+..-.++
T Consensus 308 plldavtmylpspeern-yeflqwykd-----------------dlcalafkvlhdkqrg-~l~fmriysgsi~~~~ai~ 368 (753)
T KOG0464|consen 308 PLLDAVTMYLPSPEERN-YEFLQWYKD-----------------DLCALAFKVLHDKQRG-PLSFMRIYSGSIHNNLAIF 368 (753)
T ss_pred chhhhhhhccCChhhcc-hHHHhhhhh-----------------hHHHHhhhhhcccccC-ceeEEEEecccccCceeee
Confidence 99999999999998743 334444432 4788999999998764 5999999999999999999
Q ss_pred EccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccC------------------
Q 001965 525 VLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEY------------------ 586 (989)
Q Consensus 525 vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~------------------ 586 (989)
+.... ..+.+.+++++.+++..+|+++.||||.+..||+.+.+ |+|++.++.
T Consensus 369 nin~~---------~se~~~kl~~pfade~~~i~qlsagnialt~glk~tat-gdtivaskasa~aa~qk~~~egekk~~ 438 (753)
T KOG0464|consen 369 NINGM---------CSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTAT-GDTIVASKASAEAAAQKAAGEGEKKHL 438 (753)
T ss_pred ecccc---------cccchHhhhccchhhhhhhhhcccccEEEEecceeecc-CCeEEecchhHHHHHHHhhccchhhcc
Confidence 87644 56889999999999999999999999999999999888 799986432
Q ss_pred ---CCccccccccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHh
Q 001965 587 ---DEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRE 662 (989)
Q Consensus 587 ---~~~~~~~~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~ 662 (989)
..+...|..+. .|.|||.+.|||.+.+.++.+..+|+.|.++||++.++. .+|||+|+.||||||+|.+.+|+++
T Consensus 439 q~~daerll~agie-~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~gelhie~ihdrikr 517 (753)
T KOG0464|consen 439 QNKDAERLLFAGIE-IPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKR 517 (753)
T ss_pred CCccccceeeeccc-CCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccchhhHHHHHHHHHh
Confidence 11245677887 699999999999999999999999999999999999997 7899999999999999999999999
Q ss_pred hhcccceEEcccEEEEEeeeecccccee-eeec-CCCc--eEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhc
Q 001965 663 LYSEVEVKVADPVVSFCETVVESSSMKC-FAET-PNKK--NKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKY 738 (989)
Q Consensus 663 ~y~~iei~vs~P~V~yrETI~~~s~~~~-~a~t-~nk~--~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~ 738 (989)
.|+ +++-+++.+|+|||||.+.-.... ...+ ..|+ --+.+.+.|.+... .+|.|+.
T Consensus 518 ey~-ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa-----------~ip~kki-------- 577 (753)
T KOG0464|consen 518 EYG-LDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQA-----------HIPFKKI-------- 577 (753)
T ss_pred hcC-chheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccc-----------cccceeE--------
Confidence 998 999999999999999987532100 0001 1222 12222232322110 0111110
Q ss_pred cchhhhccceEEeCCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcc
Q 001965 739 DWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLH 818 (989)
Q Consensus 739 ~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~ 818 (989)
.|. ++......++.--+++|..|+..||..|||+|+||++|.++|+...++.-.+.
T Consensus 578 -----------efe-------------~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n 633 (753)
T KOG0464|consen 578 -----------EFE-------------LAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKIN 633 (753)
T ss_pred -----------Eee-------------ccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCC
Confidence 010 01111112233336788899999999999999999999999999987632211
Q ss_pred cCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecc-cchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhcc
Q 001965 819 RGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPI-DCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESF 897 (989)
Q Consensus 819 ~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~-~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esf 897 (989)
...|..++.+|+..|+.+|.-.|+||+|.++|.+-. +++..|+.+|.+|||++...+..+.+..-+|-|++|++|..
T Consensus 634 --~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~ 711 (753)
T KOG0464|consen 634 --PALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIE 711 (753)
T ss_pred --HHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhh
Confidence 123344556666799999999999999999999866 99999999999999999877766666677899999999999
Q ss_pred chhHHHhhcCCccEEEeeeccceeecC
Q 001965 898 GFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 898 gf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||++.||++|+|.|.|.++|++|+.|.
T Consensus 712 ~~s~~lrtltsg~a~~ale~~~yqamn 738 (753)
T KOG0464|consen 712 GLSKTLRTLTSGFADFALEFRGYQAMN 738 (753)
T ss_pred cHHHHHHHHhcccceEEEEecchhhcC
Confidence 999999999999999999999999985
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.8e-72 Score=670.57 Aligned_cols=467 Identities=25% Similarity=0.391 Sum_probs=397.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
||||+|+||+|||||||+++|++.+|.+.+.+... .+++|+.+.|++||+|+.+...++.| +++.+||||||
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~---~~~~D~~~~ErerGiTI~~~~~~v~~-----~~~kinlIDTP 72 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVA---ERVMDSNDLERERGITILAKNTAIRY-----NGTKINIVDTP 72 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccce---eecccCchHHHhCCccEEeeeEEEEE-----CCEEEEEEECC
Confidence 79999999999999999999999999887544332 46899999999999999999999988 67999999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHH
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVIN 299 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in 299 (989)
||.+|..++.++++.+|+||||||+.+|++.||+.+|+.+...++|+|+|+||+|+...+ ...+++++.
T Consensus 73 Gh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-----------~~~v~~ei~ 141 (594)
T TIGR01394 73 GHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-----------PDEVVDEVF 141 (594)
T ss_pred CHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-----------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996422 345677777
Q ss_pred HHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCC
Q 001965 300 NHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPAS 379 (989)
Q Consensus 300 ~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~ 379 (989)
.++....... . ....| ++++||+.||++.-.. . .
T Consensus 142 ~l~~~~g~~~-e-~l~~p----vl~~SA~~g~~~~~~~-----------------------------~-----------~ 175 (594)
T TIGR01394 142 DLFAELGADD-E-QLDFP----IVYASGRAGWASLDLD-----------------------------D-----------P 175 (594)
T ss_pred HHHHhhcccc-c-cccCc----EEechhhcCcccccCc-----------------------------c-----------c
Confidence 7776432110 1 11123 6889999888631000 0 0
Q ss_pred CcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCChhh
Q 001965 380 GGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKD 459 (989)
Q Consensus 380 ~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e 459 (989)
+ . +...|+++|++++|+|..
T Consensus 176 ------------------------------------~---------~---------------gi~~Lld~Iv~~lP~P~~ 195 (594)
T TIGR01394 176 ------------------------------------S---------D---------------NMAPLFDAIVRHVPAPKG 195 (594)
T ss_pred ------------------------------------c---------c---------------CHHHHHHHHHHhCCCCCC
Confidence 0 0 123578999999999941
Q ss_pred hhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCce
Q 001965 460 AAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMT 539 (989)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~ 539 (989)
++++||.++|+|++++++.|. +++|||+||+|++||.|++...+- ...
T Consensus 196 -------------------------~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~~------~~~ 243 (594)
T TIGR01394 196 -------------------------DLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRDG------TIE 243 (594)
T ss_pred -------------------------CCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCCC------cee
Confidence 567899999999999998865 999999999999999999876421 123
Q ss_pred EEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEeeeCCC---CCh
Q 001965 540 VKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNP---SEL 616 (989)
Q Consensus 540 ~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~---~dl 616 (989)
..+|++|+.++|.++.++++|.|||||+|.|+++..+ |+||++. ....+++++. .++|++.++++|.+. .+.
T Consensus 244 ~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~-Gdtl~~~---~~~~~l~~~~-~~~P~~~~~~~~~~~p~~~~e 318 (594)
T TIGR01394 244 NGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINI-GETIADP---EVPEALPTIT-VDEPTLSMTFSVNDSPLAGKE 318 (594)
T ss_pred EEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCC-CCEEeCC---CccccCCCCC-CCCCeEEEEEEecCCCccccc
Confidence 5799999999999999999999999999999988766 8999983 4456677777 489999999999754 333
Q ss_pred hH------HHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccce
Q 001965 617 PK------MVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMK 689 (989)
Q Consensus 617 ~k------L~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~~ 689 (989)
.| |.++|.|+.++||+|++.. ++++|++|+|+|||||++++++||++ + +|+.+|+|.|+||| |.
T Consensus 319 ~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g-~e~~~~~P~V~yre-i~------ 389 (594)
T TIGR01394 319 GKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE-G-FELQVGRPQVIYKE-ID------ 389 (594)
T ss_pred chhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc-C-ceEEEeCCEEEEEe-CC------
Confidence 33 9999999999999999876 68999999999999999999999999 5 99999999999998 41
Q ss_pred eeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCCch
Q 001965 690 CFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTE 769 (989)
Q Consensus 690 ~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~ 769 (989)
T Consensus 390 -------------------------------------------------------------------------------- 389 (594)
T TIGR01394 390 -------------------------------------------------------------------------------- 389 (594)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEE
Q 001965 770 VDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYY 849 (989)
Q Consensus 770 v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~ 849 (989)
| .|||||+.
T Consensus 390 -----------------------g------------------------------------------------~llEPi~~ 398 (594)
T TIGR01394 390 -----------------------G------------------------------------------------KKLEPIEE 398 (594)
T ss_pred -----------------------C------------------------------------------------eEECCEEE
Confidence 0 57999999
Q ss_pred EEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecCCCCcc
Q 001965 850 VEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLD 929 (989)
Q Consensus 850 veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp~dp~~ 929 (989)
++|.||++++|+|+++|++|||+|+++++..+ .+.+|+|.+|.++++||.++||+.|+|+|.|.+.|+||+++|++...
T Consensus 399 ~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 399 LTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred EEEEechHHHHHHHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCC
Confidence 99999999999999999999999999887543 47899999999999999999999999999999999999999987543
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=2.3e-70 Score=652.81 Aligned_cols=467 Identities=25% Similarity=0.367 Sum_probs=394.8
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+++||||+|+||+|||||||+++|++.++.+.+.+. ...+++|+.+.|++||+|+.+...++.| +++.+|||
T Consensus 2 ~~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---~~~~v~D~~~~E~erGiTi~~~~~~i~~-----~~~~inli 73 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE---TQERVMDSNDLEKERGITILAKNTAIKW-----NDYRINIV 73 (607)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHhcCCcccccc---cceeeeccccccccCceEEEEEEEEEec-----CCEEEEEE
Confidence 457999999999999999999999998888764322 1248899999999999999999988887 77899999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|+++|+||+|+...+ ...+++
T Consensus 74 DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~-----------~~~vl~ 142 (607)
T PRK10218 74 DTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR-----------PDWVVD 142 (607)
T ss_pred ECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc-----------hhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997543 345777
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
+++.++..... .....-.| |+++||+.||+- ++...
T Consensus 143 ei~~l~~~l~~--~~~~~~~P----Vi~~SA~~G~~~----------------~~~~~---------------------- 178 (607)
T PRK10218 143 QVFDLFVNLDA--TDEQLDFP----IVYASALNGIAG----------------LDHED---------------------- 178 (607)
T ss_pred HHHHHHhccCc--cccccCCC----EEEeEhhcCccc----------------CCccc----------------------
Confidence 88877754211 00011123 688999988841 11000
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCC
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPS 456 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPs 456 (989)
... ....|+|+|++++|+
T Consensus 179 -----------------------------------------------~~~---------------~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 179 -----------------------------------------------MAE---------------DMTPLYQAIVDHVPA 196 (607)
T ss_pred -----------------------------------------------ccc---------------chHHHHHHHHHhCCC
Confidence 000 123578999999999
Q ss_pred hhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCC
Q 001965 457 AKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEE 536 (989)
Q Consensus 457 P~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~ 536 (989)
|. +++++||.++|||++.+++.| .+++|||+||+|++||.|++...+.
T Consensus 197 P~-------------------------~~~~~Pl~~~V~k~~~d~~~G-~i~~gRV~sG~lk~Gd~v~~~~~~~------ 244 (607)
T PRK10218 197 PD-------------------------VDLDGPFQMQISQLDYNSYVG-VIGIGRIKRGKVKPNQQVTIIDSEG------ 244 (607)
T ss_pred CC-------------------------CCCCCCeEEEEEeeEecCCCc-EEEEEEEEeCcCcCCCEEEEecCCC------
Confidence 94 256789999999999999875 4999999999999999999875421
Q ss_pred CceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEeeeCC---C
Q 001965 537 DMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLN---P 613 (989)
Q Consensus 537 ~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~---~ 613 (989)
....++|++||.++|.++.++++|.|||||+|.|++++.+ |+||++. ....++.++. .++|++.+++.|.+ .
T Consensus 245 ~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~-GdTl~~~---~~~~~l~~~~-~~~P~~~~~~~~~~sp~~ 319 (607)
T PRK10218 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNI-SDTVCDT---QNVEALPALS-VDEPTVSMFFCVNTSPFC 319 (607)
T ss_pred cEeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccccc-CcEEecC---CCcccCCCCC-CCCCeEEEEEEeCCCccc
Confidence 1235789999999999999999999999999999998887 8999973 3345666777 48999999999999 7
Q ss_pred CChhHHHH---HHHHHhh---cCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccc
Q 001965 614 SELPKMVE---GLRKISK---SYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686 (989)
Q Consensus 614 ~dl~kL~~---gL~kL~k---~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s 686 (989)
.+..|+.. +|.+|.+ +||+|.+.. ++++|++|+|+|||||++++++||++ + +|+.+++|.|+||||
T Consensus 320 g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g-~e~~~~~P~V~yret----- 392 (607)
T PRK10218 320 GKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE-G-FELAVSRPKVIFREI----- 392 (607)
T ss_pred cchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC-C-ceEEEeCCEEEEEEE-----
Confidence 79999866 6677777 899999876 68999999999999999999999999 6 999999999999998
Q ss_pred cceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCC
Q 001965 687 SMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTL 766 (989)
Q Consensus 687 ~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~ 766 (989)
. |
T Consensus 393 ~-------------------------------g----------------------------------------------- 394 (607)
T PRK10218 393 D-------------------------------G----------------------------------------------- 394 (607)
T ss_pred C-------------------------------C-----------------------------------------------
Confidence 0 0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeee
Q 001965 767 PTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEP 846 (989)
Q Consensus 767 ~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEP 846 (989)
+ .+||
T Consensus 395 -----~----------------------------------------------------------------------klEP 399 (607)
T PRK10218 395 -----R----------------------------------------------------------------------KQEP 399 (607)
T ss_pred -----E----------------------------------------------------------------------EeCC
Confidence 0 0599
Q ss_pred eEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecC-C
Q 001965 847 VYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP-G 925 (989)
Q Consensus 847 i~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp-~ 925 (989)
|+.++|.||++++|+|+++|++|||+++++++..+ .+.+|+|.+|.++++||.++||+.|+|+|.|.+.|+||+++| |
T Consensus 400 i~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g 478 (607)
T PRK10218 400 YENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPG 478 (607)
T ss_pred eEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCC
Confidence 99999999999999999999999999999887543 479999999999999999999999999999999999999999 6
Q ss_pred C
Q 001965 926 D 926 (989)
Q Consensus 926 d 926 (989)
+
T Consensus 479 ~ 479 (607)
T PRK10218 479 E 479 (607)
T ss_pred C
Confidence 5
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.4e-69 Score=649.73 Aligned_cols=499 Identities=23% Similarity=0.351 Sum_probs=400.1
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
..+++||||+|+||+|||||||+++|++.+|.+.+.+ ...+++|+.+.|++||+|+++..+++.|...+++.+.+|
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~----~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~ln 77 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE----MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILN 77 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc----cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEE
Confidence 3467899999999999999999999999999886421 246889999999999999999999998865456789999
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHH
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
|||||||.+|..++.++++.||+||+|||+++|++.||...|..+...++|+++|+||+|+...+ ...+
T Consensus 78 LiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-----------~~~v 146 (600)
T PRK05433 78 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-----------PERV 146 (600)
T ss_pred EEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-----------HHHH
Confidence 99999999999999999999999999999999999999999999988899999999999986322 1234
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
.+++...++.. + ..++++||+.|++
T Consensus 147 ~~ei~~~lg~~-----------~--~~vi~iSAktG~G------------------------------------------ 171 (600)
T PRK05433 147 KQEIEDVIGID-----------A--SDAVLVSAKTGIG------------------------------------------ 171 (600)
T ss_pred HHHHHHHhCCC-----------c--ceEEEEecCCCCC------------------------------------------
Confidence 44554443210 0 1255666654431
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhc
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFI 454 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~l 454 (989)
...|++.|++.+
T Consensus 172 --------------------------------------------------------------------I~~Ll~~I~~~l 183 (600)
T PRK05433 172 --------------------------------------------------------------------IEEVLEAIVERI 183 (600)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhC
Confidence 113567788889
Q ss_pred CChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCC
Q 001965 455 PSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534 (989)
Q Consensus 455 PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~ 534 (989)
|+|.. ++++||.++|||.+.+++.| .++++||+||+|++||+|++...+
T Consensus 184 p~P~~-------------------------~~~~pl~~~Vfd~~~d~~~G-~v~~~rV~sG~Lk~Gd~i~~~~~~----- 232 (600)
T PRK05433 184 PPPKG-------------------------DPDAPLKALIFDSWYDNYRG-VVVLVRVVDGTLKKGDKIKMMSTG----- 232 (600)
T ss_pred ccccC-------------------------CCCCCceEEEEEEEecCCCc-eEEEEEEEcCEEecCCEEEEecCC-----
Confidence 98842 56789999999999999875 599999999999999999987654
Q ss_pred CCCceEEEEeEEEEeecCcceeccccCCCCEEEEe-ec---cceeeccceeecccCCCccccccccccCCcceEEEEeee
Q 001965 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE-GV---DASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEP 610 (989)
Q Consensus 535 ~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~-Gl---d~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP 610 (989)
...+|.+|+++.+ +..+++++.||||+.+. |+ ++..+ |+||++... ....++.+++ .++|++.++|+|
T Consensus 233 ----~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~-Gdtl~~~~~-~~~~~l~~~~-~~~P~v~~~i~p 304 (600)
T PRK05433 233 ----KEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARV-GDTITLAKN-PAEEPLPGFK-EVKPMVFAGLYP 304 (600)
T ss_pred ----ceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCC-CCEEECCCC-ccccCCCCCC-CCCcEEEEEEEE
Confidence 3578999996655 88999999999998885 44 44555 899987421 1114566776 489999999999
Q ss_pred CCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEe-----cchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeecc
Q 001965 611 LNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILG-----TGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVES 685 (989)
Q Consensus 611 ~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g-----~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~ 685 (989)
.+.+|.+||.+||.||..+||++.+. .||++.++.| +|+||||++++||+++|+ +++.++.|.|+||||+.+.
T Consensus 305 ~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~-~~v~~~~P~V~Yreti~~g 382 (600)
T PRK05433 305 VDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREFD-LDLITTAPSVVYEVTLTDG 382 (600)
T ss_pred CCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhhC-ceEEEecCEEEEEEEEeCC
Confidence 99999999999999999999999887 8999999999 999999999999999997 9999999999999998631
Q ss_pred ccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccC
Q 001965 686 SSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDT 765 (989)
Q Consensus 686 s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t 765 (989)
. . +.+++
T Consensus 383 ~-------------~-----------------------------------------------------------~~~~~- 389 (600)
T PRK05433 383 E-------------V-----------------------------------------------------------IEVDN- 389 (600)
T ss_pred c-------------E-----------------------------------------------------------EEEEC-
Confidence 0 0 00000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeee
Q 001965 766 LPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLME 845 (989)
Q Consensus 766 ~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlE 845 (989)
| .++| .+++. ..|||
T Consensus 390 ----------------------------p-~~~p------------ds~~~------------------------~~llE 404 (600)
T PRK05433 390 ----------------------------P-SKLP------------DPGKI------------------------EEIEE 404 (600)
T ss_pred ----------------------------c-ccCC------------Ccccc------------------------ceEEC
Confidence 1 1122 01111 08999
Q ss_pred eeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhc-cchhHHHhhcCCccEEEeeeccceeecC
Q 001965 846 PVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIES-FGFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 846 Pi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~es-fgf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||+.++|.||++++|+|+++|++|||++++++...+ ...|+|.+|++|+ ++|.++|||+|+|.|+|.+.|+||++..
T Consensus 405 P~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~--~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~ 482 (600)
T PRK05433 405 PIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGN--RVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRESD 482 (600)
T ss_pred CEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCC--eEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCccccc
Confidence 999999999999999999999999999999887543 6999999999999 9999999999999999999999999863
Q ss_pred ---------CCCcccccccCCCCCCChhhHHHHHHHHHH
Q 001965 925 ---------GDPLDKSIVLRPLEPAPIQHLAREFMVKTR 954 (989)
Q Consensus 925 ---------~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R 954 (989)
++|.|.-..+-. ...+...+|+++.|..
T Consensus 483 ~~~~~~~~n~~~~~~l~~~~~--~~~~~~~~~~~~~~l~ 519 (600)
T PRK05433 483 LVKLDILINGEPVDALSFIVH--RDKAYERGRALVEKLK 519 (600)
T ss_pred EEEEEEEECCcccceeEEeee--HHHHHHHHHHHHHHHH
Confidence 333332211111 1245577888777644
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.4e-68 Score=640.62 Aligned_cols=496 Identities=24% Similarity=0.338 Sum_probs=396.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+||||+|+||+|||||||+++|++.++.+.+. . ...+++|+.+.|++||+|+++..+++.|...+++.+.++||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDT 77 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER---E-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDT 77 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---c-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEEC
Confidence 69999999999999999999999999888632 1 2367899999999999999999999988643456789999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHH
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVI 298 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~i 298 (989)
|||.+|..++.++++.||+||+|||+++|++.+|...|..+...++|+++|+||+|+...+ ...+.+++
T Consensus 78 PG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-----------~~~~~~el 146 (595)
T TIGR01393 78 PGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-----------PERVKKEI 146 (595)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-----------HHHHHHHH
Confidence 9999999999999999999999999999999999999988888899999999999986321 12234444
Q ss_pred HHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCC
Q 001965 299 NNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPA 378 (989)
Q Consensus 299 n~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~ 378 (989)
...++.. + ..++++||+.|++
T Consensus 147 ~~~lg~~-----------~--~~vi~vSAktG~G---------------------------------------------- 167 (595)
T TIGR01393 147 EEVIGLD-----------A--SEAILASAKTGIG---------------------------------------------- 167 (595)
T ss_pred HHHhCCC-----------c--ceEEEeeccCCCC----------------------------------------------
Confidence 4433210 0 1245556554321
Q ss_pred CCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCChh
Q 001965 379 SGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAK 458 (989)
Q Consensus 379 ~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~ 458 (989)
...|++.|++++|+|.
T Consensus 168 ----------------------------------------------------------------I~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 168 ----------------------------------------------------------------IEEILEAIVKRVPPPK 183 (595)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHhCCCCC
Confidence 1235677888899984
Q ss_pred hhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCc
Q 001965 459 DAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDM 538 (989)
Q Consensus 459 e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~ 538 (989)
. ++++||.++|||.+.+++.| .++++||+||+|++||+|++...+
T Consensus 184 ~-------------------------~~~~pl~~~V~~~~~d~~~G-~v~~~rV~sG~lk~Gd~v~~~~~~--------- 228 (595)
T TIGR01393 184 G-------------------------DPDAPLKALIFDSHYDNYRG-VVALVRVFEGTIKPGDKIRFMSTG--------- 228 (595)
T ss_pred C-------------------------CCCCCeEEEEEEEEEeCCCc-EEEEEEEECCEEecCCEEEEecCC---------
Confidence 2 56789999999999999875 599999999999999999988655
Q ss_pred eEEEEeEEEEeecCcceeccccCCCCEEEEe-e---ccceeeccceeecccCCCccccccccccCCcceEEEEeeeCCCC
Q 001965 539 TVKEVTKLWIYQARDRIPISSAPPGSWVLIE-G---VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPS 614 (989)
Q Consensus 539 ~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~-G---ld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~ 614 (989)
...+|.+|+++.+.. .+++++.||||+.+. | +++..+ |+||++... ....++.++. .++|++.++|+|.+.+
T Consensus 229 ~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~-Gdtl~~~~~-~~~~~l~~~~-~~~P~v~~~i~p~~~~ 304 (595)
T TIGR01393 229 KEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRV-GDTITHVKN-PAKEPLPGFK-EVKPMVFAGLYPIDTE 304 (595)
T ss_pred CeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCC-CCEEECCCC-ccccCCCCCc-CCCcEEEEEEEECCcc
Confidence 357899999776655 999999999998875 4 444555 899987421 1113566777 4899999999999999
Q ss_pred ChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEe-----cchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccce
Q 001965 615 ELPKMVEGLRKISKSYPLAITKVEESGEHTILG-----TGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMK 689 (989)
Q Consensus 615 dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g-----~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~~ 689 (989)
|.+||.+||+||..+||++.+. .||+|.++.| +|+||||++++||+++|+ +++.++.|.|+||||+.+..
T Consensus 305 d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~-~~v~~~~P~V~Yreti~~g~--- 379 (595)
T TIGR01393 305 DYEDLRDALEKLKLNDASLTYE-PESSPALGFGFRCGFLGLLHMEIIQERLEREFN-LDLITTAPSVIYRVYLTNGE--- 379 (595)
T ss_pred cHHHHHHHHHHHhccCCeEEEE-ecCCcccccccEEeeeeHHHHHHHHHHHHHHhC-CeeEEecCEEEEEEEecCCc---
Confidence 9999999999999999999987 5899988885 999999999999999997 99999999999999986210
Q ss_pred eeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCCch
Q 001965 690 CFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTE 769 (989)
Q Consensus 690 ~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~ 769 (989)
. +.+++
T Consensus 380 ------------~---------------------------------------------------------~~~~~----- 385 (595)
T TIGR01393 380 ------------V---------------------------------------------------------IEVDN----- 385 (595)
T ss_pred ------------E---------------------------------------------------------EEEEC-----
Confidence 0 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEE
Q 001965 770 VDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYY 849 (989)
Q Consensus 770 v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~ 849 (989)
| .|+|+.++ -|.|||||+.
T Consensus 386 ------------------------p-~~~p~~~~------------------------------------~~~llEP~~~ 404 (595)
T TIGR01393 386 ------------------------P-SDLPDPGK------------------------------------IEHVEEPYVK 404 (595)
T ss_pred ------------------------c-ccCCCccc------------------------------------ccceeCCeEE
Confidence 1 24555441 2799999999
Q ss_pred EEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhc-cchhHHHhhcCCccEEEeeeccceeec-----
Q 001965 850 VEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIES-FGFETDLRYHTQGQAFSLSVFDHWAIV----- 923 (989)
Q Consensus 850 veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~es-fgf~~dLRs~T~G~a~~~~~F~hw~~v----- 923 (989)
++|.+|++++|+|+++|++|||++++++...++ ...|+|.+|++|+ ++|.++|||+|+|.|+|.+.|+||++-
T Consensus 405 ~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~-~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~~~~~ 483 (595)
T TIGR01393 405 ATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPN-RVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPSDLVKL 483 (595)
T ss_pred EEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCC-eEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccccceEEE
Confidence 999999999999999999999999998875433 6899999999997 999999999999999999999999973
Q ss_pred ----CCCCcccccccCCCCCCChhhHHHHHHHHHH
Q 001965 924 ----PGDPLDKSIVLRPLEPAPIQHLAREFMVKTR 954 (989)
Q Consensus 924 ----p~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R 954 (989)
.|+|.|.-..+-.. ..+...+|.++.|.+
T Consensus 484 ~~~~n~~~~d~l~~~~~~--~~~~~~~~~~~~~l~ 516 (595)
T TIGR01393 484 DILINGEPVDALSFIVHR--DKAYSRGREICEKLK 516 (595)
T ss_pred EEEECCcccceeEEeeeH--HHHHHHHHHHHHHHH
Confidence 33343322111111 245567888877654
No 20
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.4e-62 Score=580.48 Aligned_cols=446 Identities=20% Similarity=0.251 Sum_probs=353.9
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCC---CCcceeccCccceeeeeEEEEeeeeEEEeecCCCCce
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNS---EKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSY 211 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~---~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~ 211 (989)
....++|||+|+||+|||||||+++|++.++.+.+.|.+. .+..+++|+.+.|++||+|+.++.+.+.| +++
T Consensus 5 ~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-----~~~ 79 (526)
T PRK00741 5 QEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-----RDC 79 (526)
T ss_pred chhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-----CCE
Confidence 3456899999999999999999999999999998877655 33445689999999999999999999988 678
Q ss_pred EEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHH
Q 001965 212 LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKL 291 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l 291 (989)
.+|+||||||.+|..++.++++.+|+||+|||+++|+..+|+.+|+++...++|+++|+||+|+...+ .
T Consensus 80 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-----------~ 148 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-----------P 148 (526)
T ss_pred EEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-----------H
Confidence 99999999999999999999999999999999999999999999999999999999999999998644 3
Q ss_pred HHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCe
Q 001965 292 RHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRV 371 (989)
Q Consensus 292 ~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~ 371 (989)
.++++++++.++. ...+...|++.+- +|.|+ +|+.....++|.+ ..++.
T Consensus 149 ~~~l~~i~~~l~~-----~~~p~~~Pig~~~---------------------~f~Gv-vdl~~~~~~~~~~----~~~~~ 197 (526)
T PRK00741 149 LELLDEIEEVLGI-----ACAPITWPIGMGK---------------------RFKGV-YDLYNDEVELYQP----GEGHT 197 (526)
T ss_pred HHHHHHHHHHhCC-----CCeeEEeccccCC---------------------ceeEE-EEeecceeeeccc----CCCCc
Confidence 4577888888864 3457788885431 25666 7877666665511 11110
Q ss_pred EEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcC-------CCCCHHHHHhcchHHH--HhhhcccccC
Q 001965 372 FKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELG-------VTLSNATYRLNVRPLL--RLACSSVFGS 442 (989)
Q Consensus 372 ~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~-------~~l~~~el~~~~~~ll--~~v~~~~~g~ 442 (989)
. ++.+.+...+|+.|++||++-. ++|..+++....+..+ ..++|+|||+
T Consensus 198 ~----------------------~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GS 255 (526)
T PRK00741 198 I----------------------QEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGELTPVFFGS 255 (526)
T ss_pred c----------------------eeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCCeEEEEEee
Confidence 0 0011112223344555665200 0122222211113333 2789999999
Q ss_pred h------HHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeec---cCCCCceeEEEEEE
Q 001965 443 A------SGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYP---KSDCSVFDAFGRVY 513 (989)
Q Consensus 443 ~------~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~---~~~~~~~~a~~RV~ 513 (989)
+ +.|||+|++++|||.+.... .....+ .+.|++++|||+.+ +++. +.++|+|||
T Consensus 256 A~~n~Gv~~LLd~i~~~~P~P~~~~~~---------------~~~~~~-~~~~~~~~VFK~~~~m~~~~~-grlafvRV~ 318 (526)
T PRK00741 256 ALNNFGVQEFLDAFVEWAPAPQPRQTD---------------EREVEP-TEEKFSGFVFKIQANMDPKHR-DRIAFVRVC 318 (526)
T ss_pred cccCcCHHHHHHHHHHHCCCCCccccc---------------ceeecC-CCCceEEEEEEEEecCCCCcC-ceEEEEEEe
Confidence 5 78999999999999753211 001122 24579999999985 3454 569999999
Q ss_pred eceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccc
Q 001965 514 SGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIF 593 (989)
Q Consensus 514 SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~ 593 (989)
||++++|+.|++.+.+ +.++|++++.++|.++.++++|.|||||+|.|++++.+ |+||++. . ...|
T Consensus 319 sG~l~~g~~v~~~~~~---------k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~-GDTL~~~---~-~~~~ 384 (526)
T PRK00741 319 SGKFEKGMKVRHVRTG---------KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQI-GDTFTQG---E-KLKF 384 (526)
T ss_pred ccEECCCCEEEeccCC---------ceEEecceEEEecCCceECceeCCCCEEEEECCCCCcc-CCCccCC---C-cccc
Confidence 9999999999987655 46899999999999999999999999999999999888 7999872 2 4567
Q ss_pred cccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEE-EEccCCeEEEEecchhhHHHHHHHHHhhhcccceEEc
Q 001965 594 RPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAIT-KVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVA 672 (989)
Q Consensus 594 ~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~-~~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs 672 (989)
.++.+ +.|++.++|+|++++|.+||.+||++|.+||| +++ +.++|||++|+||||||||++++||+++|+ +++.++
T Consensus 385 ~~i~~-~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~-v~v~~~ 461 (526)
T PRK00741 385 TGIPN-FAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYN-VEAIYE 461 (526)
T ss_pred CCCCC-CCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhC-CEEEEe
Confidence 88885 79999999999999999999999999999996 665 458899999999999999999999999997 999999
Q ss_pred ccEEEEEeeee
Q 001965 673 DPVVSFCETVV 683 (989)
Q Consensus 673 ~P~V~yrETI~ 683 (989)
+|.|++.--|.
T Consensus 462 ~~~v~~~rw~~ 472 (526)
T PRK00741 462 PVGVATARWVE 472 (526)
T ss_pred cCCccEEEEEe
Confidence 99999988775
No 21
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-62 Score=544.73 Aligned_cols=475 Identities=24% Similarity=0.346 Sum_probs=397.9
Q ss_pred CC-CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 136 NP-TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 136 ~~-~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
.| ++|||++|++|+|||||||+|+|+..+|.+.. ..++.+++|..+.|+||||||++...++.|.+ +++|.+|
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~----~~~q~q~LDkl~vERERGITIkaQtasify~~--~~~ylLN 128 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDN----NIGQEQVLDKLQVERERGITIKAQTASIFYKD--GQSYLLN 128 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCC----CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc--CCceEEE
Confidence 36 89999999999999999999999999998762 34568899999999999999999999999866 6789999
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHH
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
|||||||+||..||.+.+..||||||||||++|+++||...+..|.+.++.+|.|+||||+..++ .+++
T Consensus 129 LIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~ad-----------pe~V 197 (650)
T KOG0462|consen 129 LIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSAD-----------PERV 197 (650)
T ss_pred eecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCC-----------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999766 4567
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
..++..++.... ..++++||+.||+
T Consensus 198 ~~q~~~lF~~~~-------------~~~i~vSAK~G~~------------------------------------------ 222 (650)
T KOG0462|consen 198 ENQLFELFDIPP-------------AEVIYVSAKTGLN------------------------------------------ 222 (650)
T ss_pred HHHHHHHhcCCc-------------cceEEEEeccCcc------------------------------------------
Confidence 788877776421 1478899998873
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhc
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFI 454 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~l 454 (989)
...+|++|++++
T Consensus 223 --------------------------------------------------------------------v~~lL~AII~rV 234 (650)
T KOG0462|consen 223 --------------------------------------------------------------------VEELLEAIIRRV 234 (650)
T ss_pred --------------------------------------------------------------------HHHHHHHHHhhC
Confidence 012688999999
Q ss_pred CChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCC
Q 001965 455 PSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534 (989)
Q Consensus 455 PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~ 534 (989)
|.|.. ..++||.+.+|-.+.|++.|. ++++||..|.+++||+|..+..+
T Consensus 235 PpP~~-------------------------~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~t~----- 283 (650)
T KOG0462|consen 235 PPPKG-------------------------IRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAATG----- 283 (650)
T ss_pred CCCCC-------------------------CCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEeecC-----
Confidence 99953 467899999999999999865 99999999999999999988655
Q ss_pred CCCceEEEEeEEEEeecCcceeccccCCCCEEEEee-ccceeeccceeecccCCCccccccccccCCcceEEEEeeeCCC
Q 001965 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEG-VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNP 613 (989)
Q Consensus 535 ~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~G-ld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~ 613 (989)
+....++-.+..+..-+..++....+|.|++-.| ++.+.+ |+||+..........++..+ ++.|++.+..-|.+.
T Consensus 284 --~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~I-GdTi~~~~~~~~v~tl~~~~-~~~pMvFvg~fP~dg 359 (650)
T KOG0462|consen 284 --KSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQI-GDTIAHKSVTKAVETLPGFE-PTKPMVFVGLFPLDG 359 (650)
T ss_pred --cceEeEEeEEeccCceeeeeecccccceeEecccccccccc-cceeeecccCcccCcCCCCC-CCcceEEeccccCcc
Confidence 2234566667777778888888888999999888 888888 79999743212334444444 578999999999999
Q ss_pred CChhHHHHHHHHHhhcCCeeEEEEccCC----eEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccce
Q 001965 614 SELPKMVEGLRKISKSYPLAITKVEESG----EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMK 689 (989)
Q Consensus 614 ~dl~kL~~gL~kL~k~DP~l~~~~eetG----E~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~~ 689 (989)
+|...|-+++.||+.+|+++.+..+.|| -..+.+.|.|||++..++|+++|+ .++.++.|.|+||=-......
T Consensus 360 sd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg-~elivt~PtV~Yr~~~~~~~~-- 436 (650)
T KOG0462|consen 360 SDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYG-AELIVTPPTVPYRVVYSNGDE-- 436 (650)
T ss_pred chhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcC-ceeeecCCcceEEEEecCCce--
Confidence 9999999999999999999998877776 358999999999999999999997 999999999999743211000
Q ss_pred eeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCCch
Q 001965 690 CFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTE 769 (989)
Q Consensus 690 ~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~ 769 (989)
+. .. .|+.| |.
T Consensus 437 -----------~~-----------------------------------------------i~-----np~~f-----p~- 447 (650)
T KOG0462|consen 437 -----------IL-----------------------------------------------IS-----NPALF-----PD- 447 (650)
T ss_pred -----------ee-----------------------------------------------ec-----ChhhC-----CC-
Confidence 00 00 01111 10
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEE
Q 001965 770 VDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYY 849 (989)
Q Consensus 770 v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~ 849 (989)
+... --.+||+..
T Consensus 448 ----------------------------------------------~~~v---------------------~~~lEP~v~ 460 (650)
T KOG0462|consen 448 ----------------------------------------------PSDV---------------------KEFLEPYVE 460 (650)
T ss_pred ----------------------------------------------cccc---------------------hhhcCceEE
Confidence 0000 024899999
Q ss_pred EEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccc-hhHHHhhcCCccEEEeeeccceeecCCCC
Q 001965 850 VEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFG-FETDLRYHTQGQAFSLSVFDHWAIVPGDP 927 (989)
Q Consensus 850 veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfg-f~~dLRs~T~G~a~~~~~F~hw~~vp~dp 927 (989)
++|.+|.+++|.|+..++.|||...++...+++ ...++-++|++|..| |-..|.|.|+|.|++..+|++|+ ++|.
T Consensus 461 ~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~n-r~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~--~sdL 536 (650)
T KOG0462|consen 461 ATIITPDEYVGAVIELCSERRGEQKDMTYIDGN-RVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ--ASDL 536 (650)
T ss_pred EEEECcHHHHHHHHHHHHHhhhheecceeccCC-eEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc--cccc
Confidence 999999999999999999999999999999887 788999999999999 99999999999999999999999 5553
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=6.9e-61 Score=566.11 Aligned_cols=452 Identities=19% Similarity=0.258 Sum_probs=348.4
Q ss_pred hhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCc---ceeccCccceeeeeEEEEeeeeEEEeecCCC
Q 001965 132 GLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKH---TRYTDTRIDEQERRISIKAVPMSLVLEDSNS 208 (989)
Q Consensus 132 ~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~ 208 (989)
+++....++|||||+||+|||||||+++|++.++.+.+.|.+..++ .+++|+.+.|++||+|+.++.+.+.|
T Consensus 3 ~~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~----- 77 (527)
T TIGR00503 3 DLLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY----- 77 (527)
T ss_pred hhhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-----
Confidence 3455568899999999999999999999999999998877765332 36799999999999999999999988
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHH
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAY 288 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~ 288 (989)
+++.+||||||||.+|..++.++++.+|+||+|||+..|+..+|+.+|+.+...++|+++|+||+|+...+
T Consensus 78 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~--------- 148 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRD--------- 148 (527)
T ss_pred CCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCC---------
Confidence 67899999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccC-
Q 001965 289 HKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHP- 367 (989)
Q Consensus 289 ~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~- 367 (989)
..+++++++..++. ...+.+.|++.... |.|+ +|+.....++ |..
T Consensus 149 --~~~ll~~i~~~l~~-----~~~~~~~PIg~~~~---------------------f~gv-~d~l~~~~~~-----y~~~ 194 (527)
T TIGR00503 149 --PLELLDEVENELKI-----NCAPITWPIGCGKL---------------------FKGV-YHLLKDETYL-----YQSG 194 (527)
T ss_pred --HHHHHHHHHHHhCC-----CCccEEEEecCCCc---------------------eeEE-EEcccCccee-----cCcc
Confidence 34577888888765 23456677643221 4454 6665544443 322
Q ss_pred CCCeEEeCCCCCCc-chHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccCh---
Q 001965 368 DTRVFKKKPPASGG-ERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA--- 443 (989)
Q Consensus 368 ~~~~~~~~~~~~~~-~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~--- 443 (989)
.++.........+. .+....++.+.+++ +..+.| +.+++.+..++.+.+.. ..++|+|||++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-------~~~~~l-e~~~~~~~~~~~~~~~~------~~~~PV~~GSA~~n 260 (527)
T TIGR00503 195 TGGTIQAVRQVKGLNNPALDSAVGSDLAQ-------QLRDEL-ELVEGASNEFDLAAFHG------GEMTPVFFGTALGN 260 (527)
T ss_pred CCCceeEeehhccCCChhhhhhhhHHHHH-------HHHHHH-HHHhhhccccCHHHHhc------CCeeEEEEeecccC
Confidence 12222211110000 01111111111111 111222 33444334444322211 27888999885
Q ss_pred ---HHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeec--cC-CCCceeEEEEEEecee
Q 001965 444 ---SGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYP--KS-DCSVFDAFGRVYSGII 517 (989)
Q Consensus 444 ---~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~--~~-~~~~~~a~~RV~SGtL 517 (989)
+.|||+|++++|||.+.... .....+ .++|++++|||+.+ ++ +. +.+||+|||||+|
T Consensus 261 ~Gv~~LLd~i~~~~PsP~~~~~~---------------~~~~~~-~~~~~~~~VFK~~~~mdp~~~-griaf~RV~sG~l 323 (527)
T TIGR00503 261 FGVDHFLDGLLQWAPKPEARQSD---------------TRTVEP-TEEKFSGFVFKIQANMDPKHR-DRVAFMRVVSGKY 323 (527)
T ss_pred ccHHHHHHHHHHHCCCCccccCC---------------ceecCC-CCCCeeEEEEEEEeccCcccC-ceEEEEEEeeeEE
Confidence 78999999999999753211 011223 45689999999998 74 55 4599999999999
Q ss_pred cCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccc
Q 001965 518 QTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQ 597 (989)
Q Consensus 518 ~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~ 597 (989)
++|++|++.+.+ +.++|++++.++|.++.++++|.|||||+|.|++.+.+ |+||++. . ...|.++.
T Consensus 324 ~~g~~v~~~~~~---------k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~-GDtl~~~---~-~~~~~~i~ 389 (527)
T TIGR00503 324 EKGMKLKHVRTG---------KDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQI-GDTFTQG---E-KIKFTGIP 389 (527)
T ss_pred cCCCEEEecCCC---------CcEEecchhhhhcCCceEcceeCCCCEEEEECCCCccc-CCEecCC---C-ceeecCCC
Confidence 999999987765 46899999999999999999999999999999999888 7999872 2 45677887
Q ss_pred cCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEE-EccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEE
Q 001965 598 FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITK-VEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVV 676 (989)
Q Consensus 598 ~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~-~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V 676 (989)
+ +.|++.++|+|++++|.+||.+||++|.+||| +++. .++|||++|+||||||||++++||+++|+ +++.+++|.|
T Consensus 390 ~-~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~-v~v~~~~~~v 466 (527)
T TIGR00503 390 N-FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYN-VEARYEPVNV 466 (527)
T ss_pred C-CCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhC-CeEEEeCCCc
Confidence 5 79999999999999999999999999999999 6654 58899999999999999999999999997 9999999998
Q ss_pred EEE
Q 001965 677 SFC 679 (989)
Q Consensus 677 ~yr 679 (989)
+..
T Consensus 467 ~~~ 469 (527)
T TIGR00503 467 ATA 469 (527)
T ss_pred eEE
Confidence 853
No 23
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-60 Score=522.59 Aligned_cols=467 Identities=26% Similarity=0.402 Sum_probs=390.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
..+|||||++|+|||||||+|.||.++|.+.. ...-..|.||+...|++|||||-+....+.| +++.|||+|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~---~e~v~ERvMDSnDlEkERGITILaKnTav~~-----~~~~INIvD 74 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFRE---REEVAERVMDSNDLEKERGITILAKNTAVNY-----NGTRINIVD 74 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhcccccc---ccchhhhhcCccchhhhcCcEEEeccceeec-----CCeEEEEec
Confidence 46999999999999999999999999998874 3333578999999999999999988888877 789999999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHH
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEV 297 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~ 297 (989)
||||.||..||.+.+...|+++|+|||.+|.++||+.+++.|.+.+++.|+||||+||..+. ...++++
T Consensus 75 TPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Ar-----------p~~Vvd~ 143 (603)
T COG1217 75 TPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDAR-----------PDEVVDE 143 (603)
T ss_pred CCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCC-----------HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999765 4568888
Q ss_pred HHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCC
Q 001965 298 INNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPP 377 (989)
Q Consensus 298 in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~ 377 (989)
+-.++-..... +..+ -.| |+|+|++.||+.. +..
T Consensus 144 vfDLf~~L~A~-deQL-dFP----ivYAS~~~G~a~~----------------~~~------------------------ 177 (603)
T COG1217 144 VFDLFVELGAT-DEQL-DFP----IVYASARNGTASL----------------DPE------------------------ 177 (603)
T ss_pred HHHHHHHhCCC-hhhC-CCc----EEEeeccCceecc----------------Ccc------------------------
Confidence 88888654321 1222 224 6899999998521 100
Q ss_pred CCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCCh
Q 001965 378 ASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSA 457 (989)
Q Consensus 378 ~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP 457 (989)
.. ..+ ..+|.++|++|+|.|
T Consensus 178 -~~--------------------------------------------~~~---------------m~pLfe~I~~hvp~P 197 (603)
T COG1217 178 -DE--------------------------------------------ADD---------------MAPLFETILDHVPAP 197 (603)
T ss_pred -cc--------------------------------------------ccc---------------hhHHHHHHHHhCCCC
Confidence 00 001 125788999999999
Q ss_pred hhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCC
Q 001965 458 KDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEED 537 (989)
Q Consensus 458 ~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~ 537 (989)
.. |.++||-++|+-+-++++.|+ ++.|||++|++++||.|.++... ..
T Consensus 198 ~~-------------------------~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~------g~ 245 (603)
T COG1217 198 KG-------------------------DLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD------GT 245 (603)
T ss_pred CC-------------------------CCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC------Cc
Confidence 52 778999999999999999865 99999999999999999998743 23
Q ss_pred ceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEee----eCCC
Q 001965 538 MTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATE----PLNP 613 (989)
Q Consensus 538 ~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIe----P~~~ 613 (989)
....+|++++-+.|=++.++++|.|||||+|.|++.... ++|+|+. .....++++. .-+|.+.+.+- |..-
T Consensus 246 ~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~i-gdTi~d~---~~~~aLp~l~-iDePTlsMtf~vN~SPfAG 320 (603)
T COG1217 246 TENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINI-GDTICDP---DNPEALPALS-VDEPTLSMTFSVNDSPFAG 320 (603)
T ss_pred EEeeEEEeeeeccceeeeecccccccCEEEEcCcccccc-cccccCC---CCccCCCCcc-cCCCceEEEEEecCCCCCC
Confidence 466899999999999999999999999999999998777 8999984 4455566665 45777666654 4333
Q ss_pred CCh-----hHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeecccc
Q 001965 614 SEL-----PKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSS 687 (989)
Q Consensus 614 ~dl-----~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~ 687 (989)
.+= .++.+.|.+=...+-++++.. ++-....++|-|||||-++++.+|++ +.|+.||.|.|.||| |-
T Consensus 321 ~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE--GfEl~VsrP~Vi~ke-id---- 393 (603)
T COG1217 321 KEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE--GFELQVSRPEVIIKE-ID---- 393 (603)
T ss_pred cCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc--ceEEEecCceEEEEe-cC----
Confidence 332 367777777777777777655 33478999999999999999999997 599999999999988 21
Q ss_pred ceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCC
Q 001965 688 MKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLP 767 (989)
Q Consensus 688 ~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~ 767 (989)
|
T Consensus 394 -------------------------------G------------------------------------------------ 394 (603)
T COG1217 394 -------------------------------G------------------------------------------------ 394 (603)
T ss_pred -------------------------------C------------------------------------------------
Confidence 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeee
Q 001965 768 TEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPV 847 (989)
Q Consensus 768 ~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi 847 (989)
.++||+
T Consensus 395 --------------------------------------------------------------------------~~~EP~ 400 (603)
T COG1217 395 --------------------------------------------------------------------------VKCEPF 400 (603)
T ss_pred --------------------------------------------------------------------------cCcCcc
Confidence 125789
Q ss_pred EEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecCCCC
Q 001965 848 YYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDP 927 (989)
Q Consensus 848 ~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp~dp 927 (989)
-.+.|.||+++.|.|+..|..|+|...++.+. |.+..++.-.+|..-.+||.++.-+.|+|.|.+...|+||+++-++.
T Consensus 401 E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~-g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i 479 (603)
T COG1217 401 EEVTIDVPEEHQGAVIEKLGERKGEMKDMAPD-GKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEI 479 (603)
T ss_pred eeEEecCchhhhhHHHHHHhhhhHhHhhcccC-CCCeEEEEEEccCcceeccchheeeccccceeeeecccccccccccc
Confidence 99999999999999999999999999988875 55689999999999999999999999999999999999999988743
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.8e-55 Score=479.14 Aligned_cols=470 Identities=23% Similarity=0.357 Sum_probs=382.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.++|||.+|++|.|||||||.|+|+..++.+.+ ......++|+...|++|||||++..+++.|...++..|.+|||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~----Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI 81 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSE----REMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI 81 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcCh----HHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence 578999999999999999999999999998863 1223567899999999999999999999998888899999999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||+||+-||.+++.+|.||+|||||+.|++.||..-..+|...++-+|-|+||||+..++ .+++.+
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad-----------pervk~ 150 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD-----------PERVKQ 150 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998766 355777
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
+|...++-.. .+.+-+||+.|-+
T Consensus 151 eIe~~iGid~-------------~dav~~SAKtG~g-------------------------------------------- 173 (603)
T COG0481 151 EIEDIIGIDA-------------SDAVLVSAKTGIG-------------------------------------------- 173 (603)
T ss_pred HHHHHhCCCc-------------chheeEecccCCC--------------------------------------------
Confidence 8887776411 1223455553321
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCC
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPS 456 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPs 456 (989)
...+|+.|++.+|.
T Consensus 174 ------------------------------------------------------------------I~~iLe~Iv~~iP~ 187 (603)
T COG0481 174 ------------------------------------------------------------------IEDVLEAIVEKIPP 187 (603)
T ss_pred ------------------------------------------------------------------HHHHHHHHHhhCCC
Confidence 12367889999999
Q ss_pred hhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCC
Q 001965 457 AKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEE 536 (989)
Q Consensus 457 P~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~ 536 (989)
|. | |+++||-|.+|--+.|++.| -++++||+.|++++||+|+.+.++
T Consensus 188 P~------------g-------------~~~~pLkALifDS~yD~Y~G-Vv~~vRi~dG~ik~gdki~~m~tg------- 234 (603)
T COG0481 188 PK------------G-------------DPDAPLKALIFDSWYDNYLG-VVVLVRIFDGTLKKGDKIRMMSTG------- 234 (603)
T ss_pred CC------------C-------------CCCCcceEEEEeccccccce-EEEEEEEeeceecCCCEEEEEecC-------
Confidence 95 2 78999999999999999985 499999999999999999999877
Q ss_pred CceEEEEeEEEEeecCcceeccccCCCCEEEEe----eccceeeccceeecccCCCccccccccccCCcceEEEEeeeCC
Q 001965 537 DMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE----GVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLN 612 (989)
Q Consensus 537 ~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~----Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~ 612 (989)
+.-.|.++.++.- ...+.+...||+++-+. .+.++.+ |+|++... .....+++..+ ..+|++.+++-|.+
T Consensus 235 --~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~V-GDTiT~~~-~p~~e~LpGfk-~~~P~Vf~GlyPid 308 (603)
T COG0481 235 --KEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARV-GDTITLAS-NPATEPLPGFK-EVKPMVFAGLYPVD 308 (603)
T ss_pred --CEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcc-cceEeccC-CCccccCCCCC-cCCceEEEeecccC
Confidence 3556777776654 77889999999987553 3555666 79998532 22334556666 47899999999999
Q ss_pred CCChhHHHHHHHHHhhcCCeeEEEEccCC----eEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccc
Q 001965 613 PSELPKMVEGLRKISKSYPLAITKVEESG----EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSM 688 (989)
Q Consensus 613 ~~dl~kL~~gL~kL~k~DP~l~~~~eetG----E~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~ 688 (989)
.+|.+.|.+||.||.-.|-++.+.-|-|. -.-..-.|-||||++.+||+++|+ +++....|.|.|+=..+...
T Consensus 309 ~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~-ldlI~TaPsV~Y~v~~~~g~-- 385 (603)
T COG0481 309 SDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFD-LDLITTAPSVVYKVELTDGE-- 385 (603)
T ss_pred hhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhC-cceEecCCceEEEEEEcCCc--
Confidence 99999999999999999999987655442 345566899999999999999997 99999999999975432110
Q ss_pred eeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCCc
Q 001965 689 KCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPT 768 (989)
Q Consensus 689 ~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~ 768 (989)
.+.+++ |+
T Consensus 386 ----------------------------------------------------------------------~~~i~N--Ps 393 (603)
T COG0481 386 ----------------------------------------------------------------------EIEVDN--PS 393 (603)
T ss_pred ----------------------------------------------------------------------EEEecC--hH
Confidence 111110 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeE
Q 001965 769 EVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVY 848 (989)
Q Consensus 769 ~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~ 848 (989)
..|. .++| -.+.||+.
T Consensus 394 ~~P~------------------------------------------------~~~I----------------~~i~EP~v 409 (603)
T COG0481 394 DLPD------------------------------------------------PNKI----------------EEIEEPYV 409 (603)
T ss_pred hCCC------------------------------------------------hhhh----------------heeeCcee
Confidence 0010 0000 03579999
Q ss_pred EEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhc-cchhHHHhhcCCccEEEeeeccceeec
Q 001965 849 YVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIES-FGFETDLRYHTQGQAFSLSVFDHWAIV 923 (989)
Q Consensus 849 ~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~es-fgf~~dLRs~T~G~a~~~~~F~hw~~v 923 (989)
++.|.+|++++|.|+...+.|||.-..+..... ....+.-.+|++|. |+|-..|+|.|.|-|+|.-+|.+|++-
T Consensus 410 ~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~-~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~ 484 (603)
T COG0481 410 KATIITPQEYLGNVMELCQEKRGIQIDMEYLDQ-NRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRES 484 (603)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCceecceEecC-ceEEEEEecchHHHHHHHhHhhhccccceeeecccccccccc
Confidence 999999999999999999999999888777643 47889999999997 699999999999999999999999863
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-47 Score=418.62 Aligned_cols=443 Identities=20% Similarity=0.277 Sum_probs=326.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCC---cceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEK---HTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~---~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
.+=|+.||+.|+|+|||||++.|+...|+|...|.+..+ ....+|+.+.|++|||||.++.+.|.+ +++.+|
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-----~~~~iN 84 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-----ADCLVN 84 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-----CCeEEe
Confidence 345789999999999999999999999999887766543 344689999999999999999999988 789999
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHH
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
|+|||||.||+..+.+.|.++|.||+||||..|+.+||..+++.|+.+++|++-||||+||.+-+ |- ++
T Consensus 85 LLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd----P~-------EL 153 (528)
T COG4108 85 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRD----PL-------EL 153 (528)
T ss_pred ccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCC----hH-------HH
Confidence 99999999999999999999999999999999999999999999999999999999999999755 23 37
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCC--eE
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTR--VF 372 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~--~~ 372 (989)
+++|.+.|+-. ..|...|++-. ++ |.|+ .++..-.-.+ |.+... +.
T Consensus 154 LdEiE~~L~i~-----~~PitWPIG~g--------------k~-------F~Gv-y~l~~~~v~~-----y~~~~~~~~~ 201 (528)
T COG4108 154 LDEIEEELGIQ-----CAPITWPIGMG--------------KD-------FKGV-YHLYNDEVEL-----YESGHTDQER 201 (528)
T ss_pred HHHHHHHhCcc-----eecccccccCC--------------cc-------ccee-eeeccCEEEE-----eccCCCcccc
Confidence 88888888753 34666776432 12 3332 2221111111 222110 00
Q ss_pred EeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccCh------HHH
Q 001965 373 KKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA------SGF 446 (989)
Q Consensus 373 ~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~------~~l 446 (989)
.......-..+..-+.+-+++|.-+.+ + .+++.+-+-.++.+.+.. ..+.|+|||++ +.|
T Consensus 202 ~~~~~~~~~~p~~~~~l~~~~~~~~~e-------e-~EL~~~a~~~Fd~~~fl~------G~~TPVFFGSAl~NFGV~~~ 267 (528)
T COG4108 202 RADIVKGLDNPELDALLGEDLAEQLRE-------E-LELVQGAGNEFDLEAFLA------GELTPVFFGSALGNFGVDHF 267 (528)
T ss_pred ccccccCCCChhHHhhhchHHHHHHHH-------H-HHHHHhhccccCHHHHhc------CCccceEehhhhhccCHHHH
Confidence 000000001111212222222221110 0 112222233333332221 15788899885 789
Q ss_pred HHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCC-CCCeEEEEEeeecc--CCCCceeEEEEEEeceecCCCEE
Q 001965 447 TDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDP-SGPLMVNVTKLYPK--SDCSVFDAFGRVYSGIIQTGQSV 523 (989)
Q Consensus 447 ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~-~~pl~~~V~K~~~~--~~~~~~~a~~RV~SGtL~~G~~V 523 (989)
|+.++++.|+|...+... +...+ +..+.++|||+... |.-..++||.||.||...+|++|
T Consensus 268 L~~~~~~AP~P~~~~a~~-----------------~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv 330 (528)
T COG4108 268 LDALVDWAPSPRARQADT-----------------REVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKV 330 (528)
T ss_pred HHHHHhhCCCCCcccCCc-----------------CcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCcee
Confidence 999999999997543221 01122 23499999999874 44446699999999999999999
Q ss_pred EEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcce
Q 001965 524 RVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPV 603 (989)
Q Consensus 524 ~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv 603 (989)
.-...+ +..+++.-..++++.++.+++|.||||++|..-..... |||++. .+...|.++. +-.|=
T Consensus 331 ~h~rtG---------K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~I-GDT~t~----Ge~l~f~giP-~FaPE 395 (528)
T COG4108 331 THVRTG---------KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQI-GDTFTE----GEKLKFTGIP-NFAPE 395 (528)
T ss_pred eeeecC---------CceEecchHhhhhhhhhhhhhccCCCeEeccCCCceee-cceeec----CceeeecCCC-CCCHH
Confidence 988776 56789999999999999999999999999976554444 899987 2456788876 35677
Q ss_pred EEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccE
Q 001965 604 VKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPV 675 (989)
Q Consensus 604 ~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~ 675 (989)
+...|.-+||....+|.+||.+|.+|--.-.++-..+++.|+...|.||+|++.+||+.+|+ +++.+..--
T Consensus 396 ~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~-ve~~~e~~~ 466 (528)
T COG4108 396 LFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYN-VEAVFEPVN 466 (528)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCCCCCceEEeeeeeehHHHHHHHHhhhC-CeEEEeecc
Confidence 77778889999999999999999999765555667789999999999999999999999997 888776433
No 26
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=1.3e-45 Score=377.29 Aligned_cols=178 Identities=78% Similarity=1.328 Sum_probs=173.1
Q ss_pred ccEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeC
Q 001965 673 DPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFG 752 (989)
Q Consensus 673 ~P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fg 752 (989)
+|+|+|||||+++|...|+++|+||||+|+|++|||++++.++|++|.+....+.+.+.++|+++||||.+++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999999989999999999999999999999999999999999888899999999999999999999999999
Q ss_pred CCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHH
Q 001965 753 PDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVA 832 (989)
Q Consensus 753 P~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~ 832 (989)
|+..|||+|+|+|.+.+++++++++++++|++|||||+++||||||||+||+|+|+|+.++.+..++++||++|++|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHhhcCCeeeeeeEEE
Q 001965 833 YSAFLMATPRLMEPVYYV 850 (989)
Q Consensus 833 ~~a~~~A~prLlEPi~~v 850 (989)
++||++|+||||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999975
No 27
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=6e-42 Score=363.79 Aligned_cols=202 Identities=46% Similarity=0.767 Sum_probs=183.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC-----CCCceEEEE
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS-----NSKSYLCNI 215 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-----~~~~~~inl 215 (989)
|||||+||+|||||||+++|++.+|.+.+ ...+..+++|+.++|++||+|++++.+++.|... +++++.++|
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~---~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~i 77 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISE---KLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINL 77 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcc---ccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEE
Confidence 89999999999999999999999998763 2345689999999999999999999999988643 356899999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
||||||.+|..++..+++.+|+||+|||+.+|++.+|+.+++++...++|+|+|+||+|+.+.|++++|.++|.++.+++
T Consensus 78 iDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii 157 (222)
T cd01885 78 IDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARII 157 (222)
T ss_pred ECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccc-----CCCceEEcCCCCceeeccccccceeehhhHHHHhhhc
Q 001965 296 EVINNHISAASTT-----AGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKL 345 (989)
Q Consensus 296 ~~in~~l~~~~~~-----~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~ 345 (989)
+++|.++..+... ....+.++|.+|||+|+|+++|||||+.+||++|.-|
T Consensus 158 ~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~~~ 212 (222)
T cd01885 158 EQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVL 212 (222)
T ss_pred HHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHHHH
Confidence 9999999887432 1134679999999999999999999999999998643
No 28
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=1e-38 Score=328.39 Aligned_cols=177 Identities=60% Similarity=1.044 Sum_probs=165.9
Q ss_pred ccEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeC
Q 001965 673 DPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFG 752 (989)
Q Consensus 673 ~P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fg 752 (989)
+|+|+|||||++++...+.++++||+++|+|+++||+..+.++|+++...+....+...+.++.+|+|+.+++++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999999778899999999999999999999999999999988877777777888899999999999999999
Q ss_pred CCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHH
Q 001965 753 PDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVA 832 (989)
Q Consensus 753 P~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~ 832 (989)
|+..|||||+|+|.+...++..+.+++++|++||+||+++||||||||+||+|+|.++.++.+..++++||+++++|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 99999999999999877666668899999999999999999999999999999999999988777889999999999999
Q ss_pred HHHHhhcCCeeeeeeEE
Q 001965 833 YSAFLMATPRLMEPVYY 849 (989)
Q Consensus 833 ~~a~~~A~prLlEPi~~ 849 (989)
++||+.|+||||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999984
No 29
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=4.4e-36 Score=328.53 Aligned_cols=262 Identities=24% Similarity=0.352 Sum_probs=213.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||||+||+|||||||+++|++.+|.+.+.|.+..+ .+++|+.++|++||+|+.++...+.| +++.++|||||||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~-~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~liDTPG~ 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG-GATMDFMEQERERGITIQSAATTCFW-----KDHRINIIDTPGH 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC-ccccCCCccccCCCcCeeccEEEEEE-----CCEEEEEEECCCc
Confidence 79999999999999999999999998887777765 78899999999999999999999999 6789999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNH 301 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~ 301 (989)
.+|..++.++++.+|+||+|||+.+|++.+|+++|+.+...++|+++|+||+|+...+ ..+++++++..
T Consensus 75 ~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-----------~~~~~~~l~~~ 143 (270)
T cd01886 75 VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-----------FFRVVEQIREK 143 (270)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-----------HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997533 34578888888
Q ss_pred hhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCCc
Q 001965 302 ISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGG 381 (989)
Q Consensus 302 l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~ 381 (989)
++. ...+.+.|+..+ .+|.|+ +|+...+.+.|.+ ..++++...+.|..
T Consensus 144 l~~-----~~~~~~~Pisa~---------------------~~f~g~-vd~~~~~a~~~~~----~~~~~~~~~~ip~~- 191 (270)
T cd01886 144 LGA-----NPVPLQLPIGEE---------------------DDFRGV-VDLIEMKALYWDG----ELGEKIEETEIPED- 191 (270)
T ss_pred hCC-----CceEEEeccccC---------------------CCceEE-EEccccEEEeccc----CCCceeEEecCCHH-
Confidence 865 235667776443 226677 8998887776632 22445565665543
Q ss_pred chHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHHHHHHh
Q 001965 382 ERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTDMLVKF 453 (989)
Q Consensus 382 ~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld~i~~~ 453 (989)
..+.+.+-.-++++.++..+|+.|++||+ |..++.+++...++..++ .++|+|+|++ ..|||+|+.+
T Consensus 192 ---~~~~~~~~r~~l~e~vae~dd~L~e~yl~--~~~~~~~el~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~ 266 (270)
T cd01886 192 ---LLEEAEEAREELIETLAEFDDELMEKYLE--GEEITEEEIKAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDY 266 (270)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHh
Confidence 33333333334444444444455678998 578999999999998875 8999999995 7899999999
Q ss_pred cCCh
Q 001965 454 IPSA 457 (989)
Q Consensus 454 lPsP 457 (989)
+|||
T Consensus 267 ~p~p 270 (270)
T cd01886 267 LPSP 270 (270)
T ss_pred cCCC
Confidence 9998
No 30
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=2.7e-33 Score=306.32 Aligned_cols=254 Identities=21% Similarity=0.290 Sum_probs=201.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCC---CcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEE
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE---KHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNI 215 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~---~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inl 215 (989)
++|||+|+||+|+|||||+++|++.++.+.+.|.+.. .+.+++|+.+.|++||+|+..+...+.| +++.++|
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-----~~~~i~l 75 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-----RDCVINL 75 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-----CCEEEEE
Confidence 4799999999999999999999999999988876652 2356799999999999999999999988 7889999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
||||||.+|..++..+++.+|++|+|+|+..|+..+++.+|+.+...++|+++|+||+|+...+ ..+++
T Consensus 76 iDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-----------~~~~~ 144 (267)
T cd04169 76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-----------PLELL 144 (267)
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-----------HHHHH
Confidence 9999999999999999999999999999999999999999999988999999999999987533 23567
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCe-EEe
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRV-FKK 374 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~-~~~ 374 (989)
+++++.++. ...+.+.|+..+ ..|.|+ +|+...+++.|. +..+++ ...
T Consensus 145 ~~l~~~l~~-----~~~~~~~Pi~~~---------------------~~~~g~-vd~~~~~a~~~~----~~~~~~~~~~ 193 (267)
T cd04169 145 DEIEEELGI-----DCTPLTWPIGMG---------------------KDFKGV-YDRRTGEVELYD----RGAGGATIAP 193 (267)
T ss_pred HHHHHHHCC-----CceeEEecccCC---------------------CceEEE-EEhhhCEEEEec----CCCCCcccee
Confidence 888887765 345677887543 225666 898877776552 222222 223
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHH-HHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HH
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKS-VEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SG 445 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~-L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~ 445 (989)
...|.... +.+++.++. |++|++ +..++.+++...++..+. .++|+|+|++ +.
T Consensus 194 ~~~p~~~~----------------e~~~e~~~~l~e~~~e--~~~~~~~~~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~ 255 (267)
T cd04169 194 EETKGLDD----------------PKLDELGGDLAEQLRE--ELELLEGAGPEFDQEAFLAGELTPVFFGSALNNFGVQE 255 (267)
T ss_pred ccCCcccH----------------HHHHhcCHHHHHHHhC--CCccchhhhHHHhHHHHHcCCEEEEEecccccCcCHHH
Confidence 33343311 224444544 577887 567888888777777765 8999999995 78
Q ss_pred HHHHHHHhcCCh
Q 001965 446 FTDMLVKFIPSA 457 (989)
Q Consensus 446 lld~i~~~lPsP 457 (989)
|||+|++++|||
T Consensus 256 Lld~i~~~~P~p 267 (267)
T cd04169 256 LLDALVDLAPAP 267 (267)
T ss_pred HHHHHHHHCCCC
Confidence 999999999998
No 31
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=3.1e-33 Score=296.84 Aligned_cols=202 Identities=63% Similarity=0.937 Sum_probs=183.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
|||+|+||+|||||||+++|+..++.+.+.|+...+..+++|+.++|++||+|++...+.+.+...+++.+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 89999999999999999999999988766556666778899999999999999999999998876556789999999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHH
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINN 300 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~ 300 (989)
|.+|...+..+++.+|++|+|||+.+|...+++.+++.+...++|+++|+||+|++..++++++.+.|.++.++++++|.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999899888898888889999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhh
Q 001965 301 HISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVK 344 (989)
Q Consensus 301 ~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~ 344 (989)
.+..+.. ...+.++|+++||+|+|+++||+||+.+|+++|.=
T Consensus 161 ~~~~~~~--~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~ 202 (213)
T cd04167 161 IIASFST--TLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGL 202 (213)
T ss_pred HHHHhcC--CCceEeccCCCeEEEEecCCCeEEecHHHHhhhhH
Confidence 9987543 22367999999999999999999999999998853
No 32
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.4e-31 Score=310.35 Aligned_cols=297 Identities=22% Similarity=0.315 Sum_probs=220.7
Q ss_pred hccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceE
Q 001965 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYL 212 (989)
Q Consensus 133 l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 212 (989)
++.++...+||+++||+|||||||+++|++..+.+. .........+|..++|++||+|+.++...+.+ +++.
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~---~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-----~~~~ 76 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKG---GAKAKKYDEIDSAPEEKARGITINTAHVEYET-----ENRH 76 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccc---cccccccccccCChhhhcCCEeEEccEEEEcc-----CCeE
Confidence 455577789999999999999999999998877653 11112244789999999999999988877654 6678
Q ss_pred EEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHH
Q 001965 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKL 291 (989)
Q Consensus 213 inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l 291 (989)
++|+|||||.+|...+.++++.+|+|++|||+.+|++.||++++..+...++| +|+|+||||+... .+ .+
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~------~~---~~ 147 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD------EE---LL 147 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH------HH---HH
Confidence 99999999999999999999999999999999999999999999999999999 6789999999731 12 23
Q ss_pred HHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCe
Q 001965 292 RHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRV 371 (989)
Q Consensus 292 ~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~ 371 (989)
+.+.++++.+|....... . ..| ++++||+.||.....+- +
T Consensus 148 ~~~~~~l~~~l~~~~~~~-~---~~~----ii~~Sa~~g~n~~~~~~--------------------------------~ 187 (409)
T CHL00071 148 ELVELEVRELLSKYDFPG-D---DIP----IVSGSALLALEALTENP--------------------------------K 187 (409)
T ss_pred HHHHHHHHHHHHHhCCCC-C---cce----EEEcchhhcccccccCc--------------------------------c
Confidence 446678888887643111 0 122 56788888874211000 0
Q ss_pred EEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHH
Q 001965 372 FKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLV 451 (989)
Q Consensus 372 ~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~ 451 (989)
+ .. | ...|+.....||+++.
T Consensus 188 ~-----~~------------------------------------~-------------------~~~w~~~~~~ll~~l~ 207 (409)
T CHL00071 188 I-----KR------------------------------------G-------------------ENKWVDKIYNLMDAVD 207 (409)
T ss_pred c-----cc------------------------------------c-------------------CCchhhhHHHHHHHHH
Confidence 0 00 0 0012222345788888
Q ss_pred HhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCC
Q 001965 452 KFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYS 531 (989)
Q Consensus 452 ~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~ 531 (989)
+++|+|.. +.++||.++|.+++..+..| .+++|||+||+++.||.|.+++...
T Consensus 208 ~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G-~Vv~G~V~sG~l~~Gd~v~i~p~~~- 260 (409)
T CHL00071 208 SYIPTPER-------------------------DTDKPFLMAIEDVFSITGRG-TVATGRIERGTVKVGDTVEIVGLRE- 260 (409)
T ss_pred hhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCe-EEEEEEEecCEEeeCCEEEEeeCCC-
Confidence 88888742 34689999999999988764 5899999999999999999876421
Q ss_pred CCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe--ecc-ceeeccceeec
Q 001965 532 PEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVD-ASIMKSATLCN 583 (989)
Q Consensus 532 ~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld-~~~~k~~Tl~~ 583 (989)
....+|..|... ..++++|.|||+|+|. |++ ..+.+|+.|++
T Consensus 261 ------~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~ 305 (409)
T CHL00071 261 ------TKTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAK 305 (409)
T ss_pred ------CcEEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEec
Confidence 034688888754 2478999999999664 665 23556778876
No 33
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.98 E-value=9.5e-32 Score=289.40 Aligned_cols=229 Identities=22% Similarity=0.347 Sum_probs=189.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+|+||+|+|||||+++|++.+|.+.+.|+...+ .+++|+.+.|++||+|+..+...+.| +++.++|||||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~-~~~~D~~~~e~~rg~ti~~~~~~~~~-----~~~~i~liDTPG~ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG-TTRTDTMELERQRGITIFSAVASFQW-----EDTKVNLIDTPGH 74 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC-cccCCCchhHhhCCCceeeeeEEEEE-----CCEEEEEEeCCCc
Confidence 79999999999999999999999999888887765 67899999999999999999999988 6789999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNH 301 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~ 301 (989)
.+|..++..+++.+|++|+|||+.+|++.+++.+|+.+...++|+++|+||+|+...+ +.++++++++.
T Consensus 75 ~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-----------~~~~~~~i~~~ 143 (237)
T cd04168 75 MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-----------LEKVYQEIKEK 143 (237)
T ss_pred cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-----------HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998543 35688889888
Q ss_pred hhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCCc
Q 001965 302 ISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGG 381 (989)
Q Consensus 302 l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~ 381 (989)
++. ...+.+.|... |. ++ ...+.+
T Consensus 144 ~~~-----~~~~~~~p~~~----------~~-------------------------------~~-------~~~~~~--- 167 (237)
T cd04168 144 LSS-----DIVPMQKVGLA----------PN-------------------------------IC-------ETNEID--- 167 (237)
T ss_pred HCC-----CeEEEECCcEe----------ee-------------------------------ee-------eeeecc---
Confidence 875 23456666210 00 00 000000
Q ss_pred chHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHHHHHHh
Q 001965 382 ERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTDMLVKF 453 (989)
Q Consensus 382 ~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld~i~~~ 453 (989)
-++++.+++.+|+.|++||+ |..++++|+...++..+. .++|+|+|++ +.|||+|+++
T Consensus 168 ------------~~l~e~vae~dd~l~e~yl~--~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 168 ------------DEFWETLAEGDDELLEKYLE--GGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred ------------HHHHHHHhcCCHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 12333434444555678998 578999999999998875 8999999995 7899999999
Q ss_pred cCCh
Q 001965 454 IPSA 457 (989)
Q Consensus 454 lPsP 457 (989)
+|||
T Consensus 234 ~p~~ 237 (237)
T cd04168 234 FPTS 237 (237)
T ss_pred cCCC
Confidence 9998
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=99.98 E-value=4e-31 Score=305.22 Aligned_cols=283 Identities=24% Similarity=0.327 Sum_probs=211.6
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
....+||+|+||+|||||||+++|+...+. .|.......+++|..++|++||+|+.++.+.+.+ +++.++||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-----~~~~i~~i 80 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-----EKRHYAHV 80 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecC-----CCcEEEEE
Confidence 456789999999999999999999854332 2232222234689999999999999987766544 56789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
|||||.+|...+.++++.+|++++|||+.+|++.||++++.++...++| +|+|+||+|+... .+ .++.+.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~------~~---~~~~i~ 151 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD------EE---LLELVE 151 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch------HH---HHHHHH
Confidence 9999999999999999999999999999999999999999999999999 6789999998631 12 223455
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
++++..+...... +..-.+++.||+.|+. + .
T Consensus 152 ~~i~~~l~~~~~~--------~~~~~ii~vSa~~g~~--------------~--~------------------------- 182 (394)
T PRK12736 152 MEVRELLSEYDFP--------GDDIPVIRGSALKALE--------------G--D------------------------- 182 (394)
T ss_pred HHHHHHHHHhCCC--------cCCccEEEeecccccc--------------C--C-------------------------
Confidence 6777777653210 1111245566654420 0 0
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcC
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIP 455 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lP 455 (989)
..|+.....|++.+.+++|
T Consensus 183 -------------------------------------------------------------~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 183 -------------------------------------------------------------PKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred -------------------------------------------------------------CcchhhHHHHHHHHHHhCC
Confidence 0112223457788888888
Q ss_pred ChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCC
Q 001965 456 SAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDE 535 (989)
Q Consensus 456 sP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~ 535 (989)
.|.. +.++||.++|..+|..+..| .+++|||.||+|+.||.|++++.+.
T Consensus 202 ~~~~-------------------------~~~~p~r~~I~~~~~~~g~G-~Vv~G~v~~G~l~~gd~v~i~p~~~----- 250 (394)
T PRK12736 202 TPER-------------------------DTDKPFLMPVEDVFTITGRG-TVVTGRVERGTVKVGDEVEIVGIKE----- 250 (394)
T ss_pred CCCC-------------------------CCCCCeEEEEEEEEecCCcE-EEEEEEEeecEEecCCEEEEecCCC-----
Confidence 7731 34689999999999988764 5899999999999999999987531
Q ss_pred CCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 536 EDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 536 ~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
....+|..|... ..++++|.|||.|+| .|++. .+.+|++|+.
T Consensus 251 --~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~ 295 (394)
T PRK12736 251 --TQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAK 295 (394)
T ss_pred --CeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEec
Confidence 135688888753 567899999999966 77753 4556788876
No 35
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-30 Score=286.75 Aligned_cols=288 Identities=25% Similarity=0.361 Sum_probs=214.4
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeeeEEEe
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVL 203 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~ 203 (989)
.....-|++++||+|||||||+.+|+++.|.++. .|+....-.+.+|+.++||+||+||..+...|..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3455679999999999999999999999999876 5666666678899999999999999999999987
Q ss_pred ecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC-------cccchHHHHHHHHHcCC-CEEEEEEcccc
Q 001965 204 EDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-------VMVNTERAIRHAIQERL-PIVVVVNKVDR 275 (989)
Q Consensus 204 ~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg-------v~~qt~~~l~~~~~~~i-p~ilviNKiD~ 275 (989)
..+.++|+|||||.||..+++.++..||.|||||||..| +..||++++-+++..++ .+||++||||.
T Consensus 83 -----~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~ 157 (428)
T COG5256 83 -----DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL 157 (428)
T ss_pred -----CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc
Confidence 667899999999999999999999999999999999998 99999999999999998 78999999999
Q ss_pred cccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhh
Q 001965 276 LITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKF 355 (989)
Q Consensus 276 ~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~ 355 (989)
...+ .++++.+..+++.++....... ....|.|+.| |.| -++.+-
T Consensus 158 v~wd--------e~rf~ei~~~v~~l~k~~G~~~-~~v~FIPiSg------------------------~~G--~Nl~~~ 202 (428)
T COG5256 158 VSWD--------EERFEEIVSEVSKLLKMVGYNP-KDVPFIPISG------------------------FKG--DNLTKK 202 (428)
T ss_pred cccC--------HHHHHHHHHHHHHHHHHcCCCc-cCCeEEeccc------------------------ccC--Cccccc
Confidence 8644 3456778888888666544322 2466777633 233 111110
Q ss_pred h-hhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHh
Q 001965 356 A-SRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRL 434 (989)
Q Consensus 356 ~-~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~ 434 (989)
. .. |.|+ -+.|.++|.
T Consensus 203 s~~~---------------------------------pWY~---------GpTLleaLd--------------------- 219 (428)
T COG5256 203 SENM---------------------------------PWYK---------GPTLLEALD--------------------- 219 (428)
T ss_pred CcCC---------------------------------cCcc---------CChHHHHHh---------------------
Confidence 0 11 1221 122233332
Q ss_pred hhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEe
Q 001965 435 ACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYS 514 (989)
Q Consensus 435 v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~S 514 (989)
.+..|.. .-+.||.+-|...|+.... +.+..|||-|
T Consensus 220 ------------------~~~~p~~-------------------------~~d~Plr~pI~~v~~i~~~-gtv~vGrVEs 255 (428)
T COG5256 220 ------------------QLEPPER-------------------------PLDKPLRLPIQDVYSISGI-GTVPVGRVES 255 (428)
T ss_pred ------------------ccCCCCC-------------------------CCCCCeEeEeeeEEEecCC-ceEEEEEEee
Confidence 2222210 1367999999999985554 4588999999
Q ss_pred ceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 515 GIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 515 GtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
|.|++||+|++...+ ....|+.+..- .++++.+.+||.|.+ .|++. -+-+|+.+.+
T Consensus 256 G~i~~g~~v~~~p~~---------~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~ 314 (428)
T COG5256 256 GVIKPGQKVTFMPAG---------VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGH 314 (428)
T ss_pred eeeccCCEEEEecCc---------ceEEEeeeeec----ccccccCCCCCeEEEEecCCchhccCCccEecc
Confidence 999999999997654 34456665533 788999999999976 45543 2333444443
No 36
>PLN03126 Elongation factor Tu; Provisional
Probab=99.97 E-value=1.1e-29 Score=297.27 Aligned_cols=305 Identities=22% Similarity=0.341 Sum_probs=221.9
Q ss_pred ccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEee
Q 001965 125 VSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLE 204 (989)
Q Consensus 125 ~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 204 (989)
++...+...++.....+||+++||+|||||||+++|++..+.+. ........++|..++|++||+|+..+...+.+
T Consensus 66 ~~~~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~---~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~- 141 (478)
T PLN03126 66 FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMG---GSAPKKYDEIDAAPEERARGITINTATVEYET- 141 (478)
T ss_pred hhHHHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhc---cccccccccccCChhHHhCCeeEEEEEEEEec-
Confidence 34444555566677899999999999999999999998887664 22233356799999999999999988877766
Q ss_pred cCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCC
Q 001965 205 DSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLP 283 (989)
Q Consensus 205 ~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~ 283 (989)
+++.++|||||||.+|..++.++++.+|+|+|||||.+|++.||++++..+...++| +|+++||||+..
T Consensus 142 ----~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------ 211 (478)
T PLN03126 142 ----ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------ 211 (478)
T ss_pred ----CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------
Confidence 567899999999999999999999999999999999999999999999999999999 778999999863
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccc
Q 001965 284 PKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDM 363 (989)
Q Consensus 284 p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~ 363 (989)
+.+. ++.+.++++.+|....... ... | +++.|++.||..-...
T Consensus 212 ~~~~---~~~i~~~i~~~l~~~g~~~-~~~---~----~vp~Sa~~g~n~~~~~-------------------------- 254 (478)
T PLN03126 212 DEEL---LELVELEVRELLSSYEFPG-DDI---P----IISGSALLALEALMEN-------------------------- 254 (478)
T ss_pred HHHH---HHHHHHHHHHHHHhcCCCc-Ccc---e----EEEEEccccccccccc--------------------------
Confidence 1233 3446678888887642111 111 1 3456777665321000
Q ss_pred cccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccCh
Q 001965 364 YFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA 443 (989)
Q Consensus 364 y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~ 443 (989)
+ .+. .+ + ..|+...
T Consensus 255 ---~---~~~-----~g----------------------~---------------------------------~~wy~~i 268 (478)
T PLN03126 255 ---P---NIK-----RG----------------------D---------------------------------NKWVDKI 268 (478)
T ss_pred ---c---ccc-----cC----------------------C---------------------------------CchhhhH
Confidence 0 000 00 0 0011111
Q ss_pred HHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEE
Q 001965 444 SGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSV 523 (989)
Q Consensus 444 ~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V 523 (989)
..|++.+.++.|.|.. +.++||.+.|...|..+..| .++.|||.+|+|+.||+|
T Consensus 269 ~~Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~G-tVv~G~V~sG~i~~Gd~v 322 (478)
T PLN03126 269 YELMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRG-TVATGRVERGTVKVGETV 322 (478)
T ss_pred HHHHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCce-EEEEEEEEcCeEecCCEE
Confidence 2356666666666631 23578999999999887664 589999999999999999
Q ss_pred EEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 524 RVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 524 ~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
.+.+.+ +....+|..|... ..+++.|.||+.|+| .|++. .+.+|+.|++
T Consensus 323 ~i~p~~-------~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~ 374 (478)
T PLN03126 323 DIVGLR-------ETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAK 374 (478)
T ss_pred EEecCC-------CceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEec
Confidence 997533 1135678888744 467899999999988 56653 3556778876
No 37
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=1.2e-29 Score=293.34 Aligned_cols=284 Identities=21% Similarity=0.333 Sum_probs=207.6
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEE
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNI 215 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inl 215 (989)
+....+||+|+||+|||||||+++|+.... ..|.......+++|..++|++||+|+..+.+.+.. +++.++|
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-----~~~~~~l 79 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-----ENRHYAH 79 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcC-----CCEEEEE
Confidence 356678999999999999999999975432 22333333345789999999999999987766543 5678999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEE-EEEEcccccccccCCCchHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIV-VVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~i-lviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
||||||.+|...+.++++.+|+|++|||+.+|+..||.+++..+...++|.+ +|+||||+... .+ .++.+
T Consensus 80 iDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~------~~---~~~~~ 150 (394)
T TIGR00485 80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EE---LLELV 150 (394)
T ss_pred EECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH------HH---HHHHH
Confidence 9999999999999999999999999999999999999999999999999976 68999998631 12 23345
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
.++++.++..+.... ... .+++.||+.|+. | .+ -|
T Consensus 151 ~~~i~~~l~~~~~~~----~~~----~ii~vSa~~g~~--------------g--~~-------~~-------------- 185 (394)
T TIGR00485 151 EMEVRELLSEYDFPG----DDT----PIIRGSALKALE--------------G--DA-------EW-------------- 185 (394)
T ss_pred HHHHHHHHHhcCCCc----cCc----cEEECccccccc--------------c--CC-------ch--------------
Confidence 567777776532100 001 234555554320 0 00 01
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhc
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFI 454 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~l 454 (989)
|+ ....|++.+.+++
T Consensus 186 -------------------~~----------------------------------------------~~~~ll~~l~~~~ 200 (394)
T TIGR00485 186 -------------------EA----------------------------------------------KILELMDAVDEYI 200 (394)
T ss_pred -------------------hH----------------------------------------------hHHHHHHHHHhcC
Confidence 10 0113566666777
Q ss_pred CChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCC
Q 001965 455 PSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534 (989)
Q Consensus 455 PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~ 534 (989)
|.|.. +.++||.++|...|..+..| .+++|||.||+|+.||+|.+++.+
T Consensus 201 ~~~~~-------------------------~~~~p~r~~V~~vf~~~g~G-~Vv~G~v~~G~l~~gd~v~i~p~~----- 249 (394)
T TIGR00485 201 PTPER-------------------------ETDKPFLMPIEDVFSITGRG-TVVTGRVERGIVKVGEEVEIVGLK----- 249 (394)
T ss_pred CCCCC-------------------------CCCCCeEEEEEEEEeeCCce-EEEEEEEEeeEEeCCCEEEEecCC-----
Confidence 76631 34679999999999888764 599999999999999999987632
Q ss_pred CCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 535 ~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
.....+|..|... ..++++|.|||.|+| .|++. .+.+|++|++
T Consensus 250 --~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 250 --DTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred --CCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEec
Confidence 0134678888753 467899999999976 67643 3556778876
No 38
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=1.1e-29 Score=296.28 Aligned_cols=290 Identities=22% Similarity=0.294 Sum_probs=208.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccC------------CCCCCcceeccCccceeeeeEEEEeeeeEEEee
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFD------------PNSEKHTRYTDTRIDEQERRISIKAVPMSLVLE 204 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g------------~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 204 (989)
....+||+++||+|||||||+++|++.+|.+.+.+ .......+++|..++|++||+|+..+...+.+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~- 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence 45678999999999999999999999999876432 11112256799999999999999998877766
Q ss_pred cCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-------ccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 205 DSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-------MVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 205 ~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-------~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
+++.+||||||||.+|..++.++++.+|+||||||+.+|. ..||++++..+...++| +|+|+||||+.
T Consensus 83 ----~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 ----TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred ----CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 7889999999999999999999999999999999999984 27999999999999996 68899999986
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhh
Q 001965 277 ITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFA 356 (989)
Q Consensus 277 ~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~ 356 (989)
..+ ....++..++++++.++....... .... ++..||+.|.... +.. .
T Consensus 159 ~~~------~~~~~~~~i~~ei~~~l~~~g~~~-~~~~-------~ipiSa~~G~ni~----------------~~~--~ 206 (447)
T PLN00043 159 TPK------YSKARYDEIVKEVSSYLKKVGYNP-DKIP-------FVPISGFEGDNMI----------------ERS--T 206 (447)
T ss_pred chh------hhHHHHHHHHHHHHHHHHHcCCCc-ccce-------EEEEecccccccc----------------ccc--c
Confidence 211 112446779999999987643210 1122 3345666554210 000 0
Q ss_pred hhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhh
Q 001965 357 SRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLAC 436 (989)
Q Consensus 357 ~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~ 436 (989)
..-| |+ -+
T Consensus 207 ~~~W---------------------------------y~---------g~------------------------------ 214 (447)
T PLN00043 207 NLDW---------------------------------YK---------GP------------------------------ 214 (447)
T ss_pred CCcc---------------------------------cc---------hH------------------------------
Confidence 0111 10 01
Q ss_pred cccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEece
Q 001965 437 SSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGI 516 (989)
Q Consensus 437 ~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGt 516 (989)
.|++.+-+ +|.|.. +.++||.+.|...|..+.. +.+..|||.+|+
T Consensus 215 --------tLl~~l~~-i~~p~~-------------------------~~~~plr~~I~~v~~~~g~-G~vv~G~V~~G~ 259 (447)
T PLN00043 215 --------TLLEALDQ-INEPKR-------------------------PSDKPLRLPLQDVYKIGGI-GTVPVGRVETGV 259 (447)
T ss_pred --------HHHHHHhh-cCCCcc-------------------------ccCCCcEEEEEEEEEeCCc-EEEEEEEEECCE
Confidence 23333322 343421 2357899999998887765 458999999999
Q ss_pred ecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe--eccc-eeeccceeec
Q 001965 517 IQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVDA-SIMKSATLCN 583 (989)
Q Consensus 517 L~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld~-~~~k~~Tl~~ 583 (989)
|++||+|.+...+ ...+|..|.+ ...++++|.||+.|+|. +++. .+.+|+-|++
T Consensus 260 l~~Gd~v~~~P~~---------~~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 260 IKPGMVVTFGPTG---------LTTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred EeeCCEEEEcCCC---------CEEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 9999999987543 3567888764 35688999999999873 3432 2445566654
No 39
>PRK12735 elongation factor Tu; Reviewed
Probab=99.97 E-value=1.9e-29 Score=291.56 Aligned_cols=286 Identities=22% Similarity=0.291 Sum_probs=212.4
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEE
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNI 215 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inl 215 (989)
......||+++||+|||||||+++|++... ..|.........+|..++|++||+|+..+...+.+ ++..++|
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-----~~~~i~~ 79 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-----ANRHYAH 79 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhh---hcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-----CCcEEEE
Confidence 356678999999999999999999987543 22232222235789999999999999987766544 5678999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEE-EEEEcccccccccCCCchHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIV-VVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~i-lviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
||||||.+|...+.+++..+|+|++|||+.+|++.||++++..+...++|.+ +|+||+|+... .+. ++.+
T Consensus 80 iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~------~~~---~~~~ 150 (396)
T PRK12735 80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EEL---LELV 150 (396)
T ss_pred EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch------HHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999966 58999999631 122 3345
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
.++++.++..+.. .+..-.+++.||+.||..+ . ..-|
T Consensus 151 ~~ei~~~l~~~~~--------~~~~~~ii~~Sa~~g~n~~------------~---------~~~w-------------- 187 (396)
T PRK12735 151 EMEVRELLSKYDF--------PGDDTPIIRGSALKALEGD------------D---------DEEW-------------- 187 (396)
T ss_pred HHHHHHHHHHcCC--------CcCceeEEecchhccccCC------------C---------CCcc--------------
Confidence 5677777765421 0111234567777666310 0 0001
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhc
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFI 454 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~l 454 (989)
......|++++.+.+
T Consensus 188 -----------------------------------------------------------------~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 188 -----------------------------------------------------------------EAKILELMDAVDSYI 202 (396)
T ss_pred -----------------------------------------------------------------cccHHHHHHHHHhcC
Confidence 111235777888888
Q ss_pred CChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCC
Q 001965 455 PSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534 (989)
Q Consensus 455 PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~ 534 (989)
|.|.. +.++||.++|..+|..+.. |.++.|||.+|+|+.||+|++++.+.
T Consensus 203 ~~p~~-------------------------~~~~p~r~~I~~~f~v~g~-Gtvv~G~v~~G~i~~gd~v~i~p~~~---- 252 (396)
T PRK12735 203 PEPER-------------------------AIDKPFLMPIEDVFSISGR-GTVVTGRVERGIVKVGDEVEIVGIKE---- 252 (396)
T ss_pred CCCCc-------------------------cCCCCeEEEEEEEEecCCc-eEEEEEEEEecEEeCCCEEEEecCCC----
Confidence 87731 3467999999999988765 45899999999999999999986431
Q ss_pred CCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 535 ~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
....+|..|.. ...++++|.|||.|+| .|++. .+.+|+.|++
T Consensus 253 ---~~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 253 ---TQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred ---CeEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 13567888764 2468999999999988 67653 4556778876
No 40
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=2e-29 Score=294.31 Aligned_cols=291 Identities=21% Similarity=0.273 Sum_probs=208.2
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccC------------CCCCCcceeccCccceeeeeEEEEeeeeEEEe
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFD------------PNSEKHTRYTDTRIDEQERRISIKAVPMSLVL 203 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g------------~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~ 203 (989)
......||+++||+|||||||+++|++.+|.+.+.+ .......+++|..++|++||+|+..+...+.+
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 345667999999999999999999999998876432 22222235699999999999999998877766
Q ss_pred ecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-------ccchHHHHHHHHHcCCC-EEEEEEcccc
Q 001965 204 EDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-------MVNTERAIRHAIQERLP-IVVVVNKVDR 275 (989)
Q Consensus 204 ~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-------~~qt~~~l~~~~~~~ip-~ilviNKiD~ 275 (989)
+++.++|||||||.+|..++.++++.+|+||||||+.+|+ ..||+++|..+...++| +|+|+||||+
T Consensus 83 -----~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 83 -----PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred -----CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 7889999999999999999999999999999999999998 48999999999999998 5689999996
Q ss_pred cccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhh
Q 001965 276 LITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKF 355 (989)
Q Consensus 276 ~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~ 355 (989)
...++ ...++..+.+++...+...... ..... ++..|+..|... .+...
T Consensus 158 ~~~~~------~~~~~~~i~~~i~~~l~~~g~~-~~~~~-------~ipiSa~~g~ni----------------~~~~~- 206 (446)
T PTZ00141 158 KTVNY------SQERYDEIKKEVSAYLKKVGYN-PEKVP-------FIPISGWQGDNM----------------IEKSD- 206 (446)
T ss_pred ccchh------hHHHHHHHHHHHHHHHHhcCCC-cccce-------EEEeecccCCCc----------------ccCCC-
Confidence 53221 1234677889999888764311 01122 334555544321 00000
Q ss_pred hhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhh
Q 001965 356 ASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLA 435 (989)
Q Consensus 356 ~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v 435 (989)
..-| | + -
T Consensus 207 -~~~W----y-----------------------------~---------G------------------------------ 213 (446)
T PTZ00141 207 -NMPW----Y-----------------------------K---------G------------------------------ 213 (446)
T ss_pred -CCcc----c-----------------------------c---------h------------------------------
Confidence 0112 1 0 0
Q ss_pred hcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEec
Q 001965 436 CSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSG 515 (989)
Q Consensus 436 ~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SG 515 (989)
..|++.+.. +|.|.. +.++||.+.|..++..+.. +.++.|||.+|
T Consensus 214 --------~tL~~~l~~-~~~~~~-------------------------~~~~p~r~~I~~v~~v~g~-Gtvv~G~V~~G 258 (446)
T PTZ00141 214 --------PTLLEALDT-LEPPKR-------------------------PVDKPLRLPLQDVYKIGGI-GTVPVGRVETG 258 (446)
T ss_pred --------HHHHHHHhC-CCCCCc-------------------------CCCCCeEEEEEEEEecCCc-eEEEEEEEEcc
Confidence 123444322 333321 2357899999998887765 45889999999
Q ss_pred eecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe--eccc-eeeccceeec
Q 001965 516 IIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVDA-SIMKSATLCN 583 (989)
Q Consensus 516 tL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld~-~~~k~~Tl~~ 583 (989)
+|+.||+|.++..+ ...+|..|... ..++++|.||+.|+|. |++. .+.+|+.|++
T Consensus 259 ~l~~Gd~v~i~P~~---------~~~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 259 ILKPGMVVTFAPSG---------VTTEVKSVEMH----HEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASD 316 (446)
T ss_pred eEecCCEEEEccCC---------cEEEEEEEEec----CcccCEECCCCEEEEEECCCCHHHcCCceEEec
Confidence 99999999997644 35678887643 4678999999999883 3322 2445666665
No 41
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.97 E-value=6e-30 Score=281.17 Aligned_cols=260 Identities=27% Similarity=0.383 Sum_probs=203.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+|+||+|+|||||+++|++.++.+.+.|+...+ .+.+|+.+.|++|++|+.+....+.| +++.++|||||||
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~r~~ti~~~~~~~~~-----~~~~i~liDtPG~ 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG-TTVSDYDPEEIKRKMSISTSVAPLEW-----KGHKINLIDTPGY 74 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC-cccCCCCHHHHhhcccccceeEEEEE-----CCEEEEEEECcCH
Confidence 79999999999999999999999988777776654 67789999999999999998888888 6788999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNH 301 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~ 301 (989)
.+|..++..+++.+|++|+|+|+..|...++..+|+++...++|.++|+||+|+...+ ++.+++++++.
T Consensus 75 ~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~-----------~~~~~~~l~~~ 143 (268)
T cd04170 75 ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERAD-----------FDKTLAALQEA 143 (268)
T ss_pred HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCC-----------HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998533 34577778777
Q ss_pred hhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCCc
Q 001965 302 ISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGG 381 (989)
Q Consensus 302 l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~ 381 (989)
++. ...+...|++.+- +|.|+ +|+.....+.|. . ++.....+.|..
T Consensus 144 ~~~-----~~~~~~ip~~~~~---------------------~~~~~-vd~~~~~~~~~~-----~-~~~~~~~~~p~~- 189 (268)
T cd04170 144 FGR-----PVVPLQLPIGEGD---------------------DFKGV-VDLLTEKAYIYS-----P-GAPSEEIEIPEE- 189 (268)
T ss_pred hCC-----CeEEEEecccCCC---------------------ceeEE-EEcccCEEEEcc-----C-CCcceeccCCHH-
Confidence 754 2345566764431 13444 676665555552 1 121233333332
Q ss_pred chHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHHHHHHh
Q 001965 382 ERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTDMLVKF 453 (989)
Q Consensus 382 ~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld~i~~~ 453 (989)
..+.+.+..-++++.+...+++.|++||+ +..++++++...++..+. .++|+|+|++ +.|+|+++++
T Consensus 190 ---~~~~~~~~~~~l~e~~a~~dd~l~e~yl~--~~~~~~~~l~~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~ 264 (268)
T cd04170 190 ---LKEEVAEAREELLEAVAETDDELMEKYLE--GGELTEEELHAGLRRALRAGLLVPVLCGSALTNIGVRELLDALVHL 264 (268)
T ss_pred ---HHHHHHHHHHHHHHHHhhCCHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHh
Confidence 33444444445555544444555678998 578999999999988875 8899999995 7899999999
Q ss_pred cCCh
Q 001965 454 IPSA 457 (989)
Q Consensus 454 lPsP 457 (989)
+|||
T Consensus 265 ~p~p 268 (268)
T cd04170 265 LPSP 268 (268)
T ss_pred CCCC
Confidence 9998
No 42
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=6.7e-29 Score=286.76 Aligned_cols=286 Identities=22% Similarity=0.289 Sum_probs=209.7
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEE
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNI 215 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inl 215 (989)
+....+||+|+||+|||||||+++|++.... .|.........+|..++|++||+|+.++...+.+ +++.++|
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-----~~~~i~~ 79 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-----EKRHYAH 79 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhh---ccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-----CCeEEEE
Confidence 3567789999999999999999999875422 2222222234789999999999999988766544 5678999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEE-EEEEcccccccccCCCchHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIV-VVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~i-lviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
||||||.+|...+.++++.+|++++|||+.+|++.||++++.++...++|.+ +++||+|+... .+. ++.+
T Consensus 80 iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~------~~~---~~~~ 150 (396)
T PRK00049 80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EEL---LELV 150 (396)
T ss_pred EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcch------HHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999976 68999999631 122 3445
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
.++++.++...... |..-.+.+.||+.||..+ + ..
T Consensus 151 ~~~i~~~l~~~~~~--------~~~~~iv~iSa~~g~~~~------------~---------~~---------------- 185 (396)
T PRK00049 151 EMEVRELLSKYDFP--------GDDTPIIRGSALKALEGD------------D---------DE---------------- 185 (396)
T ss_pred HHHHHHHHHhcCCC--------ccCCcEEEeecccccCCC------------C---------cc----------------
Confidence 66788887653210 111123456766554210 0 00
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhc
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFI 454 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~l 454 (989)
.|+.....|++++.+++
T Consensus 186 ---------------------------------------------------------------~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 186 ---------------------------------------------------------------EWEKKILELMDAVDSYI 202 (396)
T ss_pred ---------------------------------------------------------------cccccHHHHHHHHHhcC
Confidence 01111234677777888
Q ss_pred CChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCC
Q 001965 455 PSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534 (989)
Q Consensus 455 PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~ 534 (989)
|+|.. +.++||.+.|...|..+.. |.++.|||.+|++++||+|.+++.+.
T Consensus 203 ~~p~~-------------------------~~~~p~r~~I~~~f~v~g~-G~Vv~G~v~~G~i~~gd~v~i~p~~~---- 252 (396)
T PRK00049 203 PTPER-------------------------AIDKPFLMPIEDVFSISGR-GTVVTGRVERGIIKVGEEVEIVGIRD---- 252 (396)
T ss_pred CCCCC-------------------------CCCCCeEEEEEEEEeeCCc-eEEEEEEEeeeEEecCCEEEEeecCC----
Confidence 87731 2357999999998888765 46899999999999999999986531
Q ss_pred CCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 535 ~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
....+|..|... ..++++|.|||.|++ .|++. -+.+|+.|++
T Consensus 253 ---~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 253 ---TQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred ---CceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 135678887643 467899999999988 56542 3446777776
No 43
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.96 E-value=4.6e-28 Score=280.66 Aligned_cols=150 Identities=22% Similarity=0.273 Sum_probs=125.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccc--c----------CCC--CCCcceeccCccceeeeeEEEEeeeeEEEeecCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMST--F----------DPN--SEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSN 207 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~--~----------g~~--~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~ 207 (989)
||+|+||+|||||||+++|++.+|.+.+ + |.. .....+++|..++|++||+|++.+...+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~---- 77 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST---- 77 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc----
Confidence 6999999999999999999999998865 2 221 122356899999999999999999888876
Q ss_pred CCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchH
Q 001965 208 SKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKD 286 (989)
Q Consensus 208 ~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~ 286 (989)
+++.++|||||||.+|..++..+++.+|+||+|||+.+|++.||++++..+...++| +|+|+||||+...+
T Consensus 78 -~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~------- 149 (406)
T TIGR02034 78 -DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD------- 149 (406)
T ss_pred -CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-------
Confidence 667899999999999999999999999999999999999999999999999888875 78899999997321
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001965 287 AYHKLRHTIEVINNHISA 304 (989)
Q Consensus 287 ~~~~l~~ii~~in~~l~~ 304 (989)
...+..+.++++.++..
T Consensus 150 -~~~~~~i~~~~~~~~~~ 166 (406)
T TIGR02034 150 -EEVFENIKKDYLAFAEQ 166 (406)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 12345566666666654
No 44
>PLN03127 Elongation factor Tu; Provisional
Probab=99.96 E-value=5.9e-28 Score=281.46 Aligned_cols=287 Identities=21% Similarity=0.307 Sum_probs=204.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
....+||+++||+|||||||+++|.... .+.|+........+|..++|++||+|+.++...+.+ +++.++||
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~~i 129 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-----AKRHYAHV 129 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-----CCeEEEEE
Confidence 4667899999999999999999996332 222333222223589999999999999988777655 56789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
|||||.+|...+.+++..+|++++|||+.+|++.||++++..+...++| +|+++||||+... .+. ++.+.
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~------~~~---~~~i~ 200 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD------EEL---LELVE 200 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH------HHH---HHHHH
Confidence 9999999999999999999999999999999999999999999999999 5789999998631 122 23344
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
++++.++....... ....+ ++.|++.++ .| .+
T Consensus 201 ~~i~~~l~~~~~~~-~~vpi-------ip~Sa~sa~--------------~g--~n------------------------ 232 (447)
T PLN03127 201 MELRELLSFYKFPG-DEIPI-------IRGSALSAL--------------QG--TN------------------------ 232 (447)
T ss_pred HHHHHHHHHhCCCC-CcceE-------EEeccceee--------------cC--CC------------------------
Confidence 56666665422100 11111 223433211 00 00
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcC
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIP 455 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lP 455 (989)
..... .....|++.+.+++|
T Consensus 233 -----------------------------------------~~~~~-------------------~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 233 -----------------------------------------DEIGK-------------------NAILKLMDAVDEYIP 252 (447)
T ss_pred -----------------------------------------ccccc-------------------chHHHHHHHHHHhCC
Confidence 00000 011247788888888
Q ss_pred ChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCC
Q 001965 456 SAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDE 535 (989)
Q Consensus 456 sP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~ 535 (989)
.|.. +.++||.+.|...|..+.. |.++.|||.+|+|+.||+|++++.+..
T Consensus 253 ~p~r-------------------------~~~~pfr~~I~~vf~v~g~-GtVvtG~v~~G~i~~Gd~v~i~p~~~~---- 302 (447)
T PLN03127 253 EPVR-------------------------VLDKPFLMPIEDVFSIQGR-GTVATGRVEQGTIKVGEEVEIVGLRPG---- 302 (447)
T ss_pred CCCc-------------------------ccccceEeeEEEEEEcCCc-eEEEEEEEEccEEecCCEEEEcccCCC----
Confidence 7731 3457898889988887765 468999999999999999999875310
Q ss_pred CCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 536 EDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 536 ~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
. ....+|..|... ..++++|.|||.|+| .|++. .+.+|+.|++
T Consensus 303 g-~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~ 348 (447)
T PLN03127 303 G-PLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICK 348 (447)
T ss_pred C-cEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEec
Confidence 0 145788888755 356899999999987 56643 3556777776
No 45
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=4.4e-28 Score=283.28 Aligned_cols=287 Identities=24% Similarity=0.364 Sum_probs=211.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCccccc------------CCCCCCcceeccCccceeeeeEEEEeeeeEEEeec
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTF------------DPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED 205 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~------------g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 205 (989)
+...||+|+||+|||||||+++|++.++.+.+. |+......+++|..++|++||+|+......+.+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-- 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-- 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec--
Confidence 456799999999999999999999999988642 444444567899999999999999999888776
Q ss_pred CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCC--CcccchHHHHHHHHHcCC-CEEEEEEcccccccccCC
Q 001965 206 SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE--GVMVNTERAIRHAIQERL-PIVVVVNKVDRLITELKL 282 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~e--gv~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~el~l 282 (989)
+++.++|||||||.+|...+.++++.+|++|+|||+.+ |+..++.+++..+...++ |+++|+||+|+...+
T Consensus 82 ---~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~--- 155 (425)
T PRK12317 82 ---DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYD--- 155 (425)
T ss_pred ---CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccccc---
Confidence 67899999999999999999999999999999999999 999999999999988887 589999999997421
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhccc
Q 001965 283 PPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGD 362 (989)
Q Consensus 283 ~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd 362 (989)
.+ ++..+.++++.++...... +..-.+++.||+.|.+. +.. ....-|
T Consensus 156 --~~---~~~~~~~~i~~~l~~~g~~--------~~~~~ii~iSA~~g~gi-----------------~~~-~~~~~w-- 202 (425)
T PRK12317 156 --EK---RYEEVKEEVSKLLKMVGYK--------PDDIPFIPVSAFEGDNV-----------------VKK-SENMPW-- 202 (425)
T ss_pred --HH---HHHHHHHHHHHHHHhhCCC--------cCcceEEEeecccCCCc-----------------ccc-ccCCCc--
Confidence 12 2445777888777653210 00112456777766431 100 000112
Q ss_pred ccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccC
Q 001965 363 MYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGS 442 (989)
Q Consensus 363 ~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~ 442 (989)
|+
T Consensus 203 -------------------------------y~----------------------------------------------- 204 (425)
T PRK12317 203 -------------------------------YN----------------------------------------------- 204 (425)
T ss_pred -------------------------------cc-----------------------------------------------
Confidence 10
Q ss_pred hHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCE
Q 001965 443 ASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQS 522 (989)
Q Consensus 443 ~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~ 522 (989)
-..|++++ +.+|.|.. +.++||.+.|...|..+.. +.++.|||.+|+|+.||+
T Consensus 205 g~~L~~~l-~~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~-G~vv~G~v~~G~v~~Gd~ 257 (425)
T PRK12317 205 GPTLLEAL-DNLKPPEK-------------------------PTDKPLRIPIQDVYSISGV-GTVPVGRVETGVLKVGDK 257 (425)
T ss_pred HHHHHHHH-hcCCCCcc-------------------------ccCCCcEEEEEEEEeeCCC-eEEEEEEEeeccEecCCE
Confidence 01244443 23555521 3457899999999987765 458899999999999999
Q ss_pred EEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 523 VRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 523 V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
|.++..+ ...+|..|... ..+++.|.||+.|+| .|++. .+.+|+.|+.
T Consensus 258 v~i~P~~---------~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~ 308 (425)
T PRK12317 258 VVFMPAG---------VVGEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGH 308 (425)
T ss_pred EEECCCC---------CeEEEEEEEEC----CcccCEECCCCeEEEEECCCCHHHccCccEecC
Confidence 9997654 24678887643 467999999999976 45542 3455777765
No 46
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.96 E-value=2.6e-27 Score=289.07 Aligned_cols=316 Identities=18% Similarity=0.231 Sum_probs=223.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
..|..+|+|+||+|||||||+++|.... + .. ...+|+|+..+...+.| .++.++||
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v------~~-----------~e~~GIT~~iga~~v~~-----~~~~Itfi 342 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN--V------AA-----------GEAGGITQHIGAYQVET-----NGGKITFL 342 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC--c------cc-----------cccCceeeeccEEEEEE-----CCEEEEEE
Confidence 3477899999999999999999995311 1 11 12467888877777776 45789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|...+.++++.+|++|||||+.+|++.||.++|+++...++|+|||+||+|+...+ ...+..
T Consensus 343 DTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-----------~e~V~~ 411 (787)
T PRK05306 343 DTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-----------PDRVKQ 411 (787)
T ss_pred ECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996432 122333
Q ss_pred HHHHH--hhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 297 VINNH--ISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 297 ~in~~--l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
++... +...+ ... . .++..||+.|++ ++
T Consensus 412 eL~~~~~~~e~~---g~~---v----p~vpvSAktG~G-----------------I~----------------------- 441 (787)
T PRK05306 412 ELSEYGLVPEEW---GGD---T----IFVPVSAKTGEG-----------------ID----------------------- 441 (787)
T ss_pred HHHHhcccHHHh---CCC---c----eEEEEeCCCCCC-----------------ch-----------------------
Confidence 33321 10000 000 0 134456655432 10
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhc
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFI 454 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~l 454 (989)
.|+++|..
T Consensus 442 ----------------------------------------------------------------------eLle~I~~-- 449 (787)
T PRK05306 442 ----------------------------------------------------------------------ELLEAILL-- 449 (787)
T ss_pred ----------------------------------------------------------------------HHHHhhhh--
Confidence 00000000
Q ss_pred CChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCC
Q 001965 455 PSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534 (989)
Q Consensus 455 PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~ 534 (989)
+ .+.. -..+++++|+.++|++.+.++..| .++++||++|+|+.||.|.+ ++
T Consensus 450 ~--~e~~-------------------~l~~~~~~~~~g~V~es~~dkg~G-~v~~v~V~sGtLk~Gd~vv~-g~------ 500 (787)
T PRK05306 450 Q--AEVL-------------------ELKANPDRPARGTVIEAKLDKGRG-PVATVLVQNGTLKVGDIVVA-GT------ 500 (787)
T ss_pred h--hhhh-------------------hcccCCCCCcEEEEEEEEEcCCCe-EEEEEEEecCeEecCCEEEE-CC------
Confidence 0 0000 011356789999999999988764 59999999999999999987 22
Q ss_pred CCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCC---------------------ccccc
Q 001965 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDE---------------------DVYIF 593 (989)
Q Consensus 535 ~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~---------------------~~~~~ 593 (989)
+.++++.+.+....++++|.||++|.|.||+..-.-|+||+...... ....+
T Consensus 501 -------~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l 573 (787)
T PRK05306 501 -------TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSL 573 (787)
T ss_pred -------cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCH
Confidence 35677777777778899999999999999988723379998321100 00111
Q ss_pred ----cccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhH
Q 001965 594 ----RPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYL 653 (989)
Q Consensus 594 ----~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhL 653 (989)
.++.......+.+.|++.....+..|.++|.+|..+++.+.+ +-.|.|.+.-
T Consensus 574 ~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i--------~~~~vG~it~ 629 (787)
T PRK05306 574 ENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI--------IHSGVGAITE 629 (787)
T ss_pred HHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE--------EeeccCCCCH
Confidence 222211123699999999999999999999999999988754 4467787754
No 47
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8e-29 Score=263.79 Aligned_cols=273 Identities=23% Similarity=0.334 Sum_probs=205.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+...-||+.+||+|||||||+-++ +..+.+.|........-.|..++|+.|||||.++.+.+.. ..+++--+
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAI---Tkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-----a~RhYaH~ 122 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAI---TKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-----AKRHYAHT 122 (449)
T ss_pred CCCcccccccccccCCchhHHHHH---HHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-----cccccccC
Confidence 345679999999999999999988 4444444444443344468889999999999998887765 55678899
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
|||||.||.+.|+.+.+..|||||||.|.+|.++||++++-+|++-++ .+++|+||.|... .-..++-+-
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~---------d~e~leLVE 193 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD---------DPEMLELVE 193 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC---------CHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 4788999999982 112255566
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
-+++++|+.+.+..+. .| |+++||+..
T Consensus 194 mE~RElLse~gf~Gd~----~P----vI~GSAL~A--------------------------------------------- 220 (449)
T KOG0460|consen 194 MEIRELLSEFGFDGDN----TP----VIRGSALCA--------------------------------------------- 220 (449)
T ss_pred HHHHHHHHHcCCCCCC----CC----eeecchhhh---------------------------------------------
Confidence 7899999987643322 23 456665511
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHH-HHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhc
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSV-EATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFI 454 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L-~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~l 454 (989)
+....+++ .+ +..-|||++-.|+
T Consensus 221 -------------------------Leg~~peig~~-------------------------------aI~kLldavDsyi 244 (449)
T KOG0460|consen 221 -------------------------LEGRQPEIGLE-------------------------------AIEKLLDAVDSYI 244 (449)
T ss_pred -------------------------hcCCCccccHH-------------------------------HHHHHHHHHhccC
Confidence 00000000 00 1224789999999
Q ss_pred CChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCC
Q 001965 455 PSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534 (989)
Q Consensus 455 PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~ 534 (989)
|-|.. +-+.||+.-|-.+|+.+.. +.++.||+-.|+|++|+++.++|-+.+
T Consensus 245 p~P~R-------------------------~~~~pFl~pie~vfsI~GR-GTVvtGrlERG~lKkG~e~eivG~~~~--- 295 (449)
T KOG0460|consen 245 PTPER-------------------------DLDKPFLLPIEDVFSIPGR-GTVVTGRLERGVLKKGDEVEIVGHNKT--- 295 (449)
T ss_pred CCccc-------------------------ccCCCceeehhheeeecCC-ceEEEEEEeecccccCCEEEEeccCcc---
Confidence 99952 4567999888888888865 559999999999999999999986632
Q ss_pred CCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eecc
Q 001965 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVD 572 (989)
Q Consensus 535 ~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld 572 (989)
...+|+.+-++ +..+++|.|||-+++ .|++
T Consensus 296 ----lkttvtgiemF----~K~ld~a~AGDn~G~LlRGik 327 (449)
T KOG0460|consen 296 ----LKTTVTGIEMF----RKSLDEAQAGDNLGALLRGIK 327 (449)
T ss_pred ----eeeEeehHHHH----HHHHHhcccccceehhhhcCC
Confidence 23456555433 456899999998864 6665
No 48
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=3.6e-27 Score=277.33 Aligned_cols=285 Identities=19% Similarity=0.231 Sum_probs=198.8
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCC--CCCcceeccCccceeeeeEEEEeeeeEEE
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPN--SEKHTRYTDTRIDEQERRISIKAVPMSLV 202 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~--~~~~~~~~D~~~~E~~rgiti~~~~~~~~ 202 (989)
.....||+|+||+|||||||+++|++.++.+.+ .|+. .....+++|+.++|++||+|++.+...+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 355678999999999999999999999998864 2221 11234689999999999999998877776
Q ss_pred eecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEcccccccccC
Q 001965 203 LEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDRLITELK 281 (989)
Q Consensus 203 ~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~el~ 281 (989)
+ +++.++|||||||.+|..++..+++.+|+||+|||+.+|++.||++++..+...++ |+|+|+||||+...+
T Consensus 104 ~-----~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-- 176 (474)
T PRK05124 104 T-----EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-- 176 (474)
T ss_pred c-----CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch--
Confidence 5 67789999999999999999999999999999999999999999999999988886 578899999997321
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhh-hhc
Q 001965 282 LPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFAS-RLW 360 (989)
Q Consensus 282 l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~-~lw 360 (989)
.+ .+..+.++++.++..... .+ .-.++..||+.|+.. + .... .-|
T Consensus 177 ---~~---~~~~i~~~l~~~~~~~~~--------~~-~~~iipvSA~~g~ni-----------------~--~~~~~~~w 222 (474)
T PRK05124 177 ---EE---VFERIREDYLTFAEQLPG--------NL-DIRFVPLSALEGDNV-----------------V--SQSESMPW 222 (474)
T ss_pred ---hH---HHHHHHHHHHHHHHhcCC--------CC-CceEEEEEeecCCCc-----------------c--cccccccc
Confidence 12 234455666655543210 00 112456677766532 1 0000 011
Q ss_pred ccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccc
Q 001965 361 GDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVF 440 (989)
Q Consensus 361 gd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~ 440 (989)
|
T Consensus 223 ---------------------------------y---------------------------------------------- 223 (474)
T PRK05124 223 ---------------------------------Y---------------------------------------------- 223 (474)
T ss_pred ---------------------------------c----------------------------------------------
Confidence 1
Q ss_pred cChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCC-CCceeEEEEEEeceecC
Q 001965 441 GSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSD-CSVFDAFGRVYSGIIQT 519 (989)
Q Consensus 441 g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~-~~~~~a~~RV~SGtL~~ 519 (989)
. -..|++. .+.+|.|.. +.++|+.+.|..++...+ ..+ ..|||.||+|+.
T Consensus 224 ~-G~tLl~~-L~~i~~~~~-------------------------~~~~p~r~~I~~v~~~~~~~~g--~~G~V~sG~l~~ 274 (474)
T PRK05124 224 S-GPTLLEV-LETVDIQRV-------------------------VDAQPFRFPVQYVNRPNLDFRG--YAGTLASGVVKV 274 (474)
T ss_pred c-hhhHHHH-HhhcCCCCC-------------------------CCCCCceeeEEEEEecCCcccc--eEEEEEeEEEec
Confidence 0 0123332 234444421 234677776665543221 112 358999999999
Q ss_pred CCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeecc-ceeeccceeec
Q 001965 520 GQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVD-ASIMKSATLCN 583 (989)
Q Consensus 520 G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld-~~~~k~~Tl~~ 583 (989)
||+|.++..+ ...+|..|.... .+++.|.||+.|+|..-+ ..+.+|+.|+.
T Consensus 275 Gd~v~i~P~~---------~~~~VksI~~~~----~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~ 326 (474)
T PRK05124 275 GDRVKVLPSG---------KESNVARIVTFD----GDLEEAFAGEAITLVLEDEIDISRGDLLVA 326 (474)
T ss_pred CCEEEEecCC---------ceEEEEEEEEcC----ccccCcCCCCEEEEEeCCccccCCccEEEC
Confidence 9999997644 357888887553 368999999999987532 23556788876
No 49
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.3e-28 Score=253.27 Aligned_cols=282 Identities=25% Similarity=0.339 Sum_probs=201.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
....-||+.+||+|||||||+.+|.. .....|...+....-.|..++|++|||||..+.+.+.. .+.++-.+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~---~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-----~~rhyahV 80 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITT---VLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-----ANRHYAHV 80 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHH---HHHhhccccccchhhhccCchHhhcCceeccceeEEec-----CCceEEec
Confidence 35577999999999999999999843 23322222332233357889999999999999888876 67789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
|||||.|+...|+.+..++|+|||||+|.+|.++||++++-++++.++| +++|+||+|... .-..+..+-
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd---------d~ellelVe 151 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD---------DEELLELVE 151 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC---------cHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 677999999984 112356678
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
.+++++|+.+....+. .| |.-+||+-
T Consensus 152 mEvreLLs~y~f~gd~----~P----ii~gSal~---------------------------------------------- 177 (394)
T COG0050 152 MEVRELLSEYGFPGDD----TP----IIRGSALK---------------------------------------------- 177 (394)
T ss_pred HHHHHHHHHcCCCCCC----cc----eeechhhh----------------------------------------------
Confidence 8999999886532111 12 11122110
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcC
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIP 455 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lP 455 (989)
.++...+ ..+ ....||+++-+|+|
T Consensus 178 ------------------------ale~~~~-~~~-------------------------------~i~eLm~avd~yip 201 (394)
T COG0050 178 ------------------------ALEGDAK-WEA-------------------------------KIEELMDAVDSYIP 201 (394)
T ss_pred ------------------------hhcCCcc-hHH-------------------------------HHHHHHHHHHhcCC
Confidence 0000000 011 12348899999999
Q ss_pred ChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCC
Q 001965 456 SAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDE 535 (989)
Q Consensus 456 sP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~ 535 (989)
.|.. +.+.||++-|-.++..... +.+++|||-.|+|+.|++|.+.|-+-+
T Consensus 202 ~Per-------------------------~~dkPflmpvEdvfsIsgr-gtvvtGrVeRG~lkvg~eveivG~~~~---- 251 (394)
T COG0050 202 TPER-------------------------DIDKPFLMPVEDVFSISGR-GTVVTGRVERGILKVGEEVEIVGIKET---- 251 (394)
T ss_pred CCCC-------------------------cccccccccceeeEEEcCc-eeEEEEEEeeeeeccCCEEEEeccccc----
Confidence 9952 4568999988888887754 569999999999999999999885511
Q ss_pred CCceEEEEeEEEEeecCcceeccccCCCCEEEE--eecc-ceeeccceee
Q 001965 536 EDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVD-ASIMKSATLC 582 (989)
Q Consensus 536 ~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld-~~~~k~~Tl~ 582 (989)
++.++..+-+ .+..+++..|||-|++ .|++ ..+.+|--|+
T Consensus 252 ---~kttvtgvem----frk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 252 ---QKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred ---ceeEEEhHHH----HHHHHhccccCCCcceEEEeccccceecceEee
Confidence 2334443321 2345788889987754 5543 3444444444
No 50
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.95 E-value=8.5e-27 Score=272.48 Aligned_cols=290 Identities=23% Similarity=0.325 Sum_probs=208.4
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeeeEEE
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~ 202 (989)
......+||+|+||+|||||||+++|++.++.+.. .|.......+++|..++|++||+|+..+...+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 34567899999999999999999999998887753 122222234679999999999999999988776
Q ss_pred eecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC---cccchHHHHHHHHHcCC-CEEEEEEccccccc
Q 001965 203 LEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG---VMVNTERAIRHAIQERL-PIVVVVNKVDRLIT 278 (989)
Q Consensus 203 ~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg---v~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~ 278 (989)
+ +++.++|||||||.+|...+..+++.+|++|+|||+.+| ...++..++..+...++ |+|+|+||+|+...
T Consensus 82 ~-----~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 82 T-----DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNY 156 (426)
T ss_pred c-----CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCc
Confidence 6 678899999999999999999999999999999999999 88899888877777765 68889999999632
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhh
Q 001965 279 ELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASR 358 (989)
Q Consensus 279 el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~ 358 (989)
+ .+ +++.+.++++.++..... .+..-.++..||+.|+.. +.. ....
T Consensus 157 ~-----~~---~~~~~~~ei~~~~~~~g~--------~~~~~~~i~iSA~~g~ni-----------------~~~-~~~~ 202 (426)
T TIGR00483 157 D-----EE---EFEAIKKEVSNLIKKVGY--------NPDTVPFIPISAWNGDNV-----------------IKK-SENT 202 (426)
T ss_pred c-----HH---HHHHHHHHHHHHHHHcCC--------CcccceEEEeeccccccc-----------------ccc-ccCC
Confidence 1 12 244567777777765321 011112455677766531 100 0000
Q ss_pred hcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcc
Q 001965 359 LWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSS 438 (989)
Q Consensus 359 lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~ 438 (989)
|.|+
T Consensus 203 ---------------------------------~w~~------------------------------------------- 206 (426)
T TIGR00483 203 ---------------------------------PWYK------------------------------------------- 206 (426)
T ss_pred ---------------------------------cccc-------------------------------------------
Confidence 1110
Q ss_pred cccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceec
Q 001965 439 VFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQ 518 (989)
Q Consensus 439 ~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~ 518 (989)
...|++++. .+|.|.. +.++||.+.|...+..+.. +.++.|||.+|+|+
T Consensus 207 ----g~~l~~~l~-~~~~~~~-------------------------~~~~p~r~~i~~v~~~~g~-G~vv~G~v~~G~i~ 255 (426)
T TIGR00483 207 ----GKTLLEALD-ALEPPEK-------------------------PTDKPLRIPIQDVYSITGV-GTVPVGRVETGVLK 255 (426)
T ss_pred ----chHHHHHHh-cCCCCCC-------------------------ccCCCcEEEEEEEEecCCC-eEEEEEEEccceee
Confidence 012455553 3454421 3457999999999988765 45899999999999
Q ss_pred CCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE--eeccc-eeeccceeec
Q 001965 519 TGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 519 ~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
.||.|.+...+ ...+|..|... ..++++|.|||.|+| .|++. .+.+|+.|++
T Consensus 256 ~gd~v~i~P~~---------~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~ 310 (426)
T TIGR00483 256 PGDKVVFEPAG---------VSGEVKSIEMH----HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGH 310 (426)
T ss_pred cCCEEEECCCC---------cEEEEEEEEEC----CcccCEEcCCCEEEEEECCCChhhcccceEEec
Confidence 99999997644 35678887643 457899999999988 45432 3455667665
No 51
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=7.4e-28 Score=250.60 Aligned_cols=175 Identities=29% Similarity=0.443 Sum_probs=141.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+++|||+++||+|||||||+++|+...+.+.+.+... +..+++|..+.|++|++|+..+...+.. ...++.++|||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~ti~~~~~~~~~---~~~~~~i~~iD 76 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-TKNAFLDKHPEERERGITIDLSFISFEK---NENNRKITLID 76 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-HHHCHHHSSHHHHHCTSSSSSEEEEEEB---TESSEEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccc-cccccccccchhhhcccccccccccccc---cccccceeecc
Confidence 4689999999999999999999999988765322211 2245689999999999999999988871 22789999999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHH
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEV 297 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~ 297 (989)
||||.+|..++.++++.+|+||+|||+.+|++.+|.++++.+...++|+++|+||||+.. .++++++++
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-----------~~~~~~~~~ 145 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-----------KELEEIIEE 145 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-----------HHHHHHHHH
T ss_pred cccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-----------hhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999983 225667888
Q ss_pred HHHHh-hhhcccCCCceEEcCCCCceeeccccccceee
Q 001965 298 INNHI-SAASTTAGNVQVIDPAAGNVCFASASAGWSFT 334 (989)
Q Consensus 298 in~~l-~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ft 334 (989)
++..+ ........ ..-.|++.||+.||++.
T Consensus 146 ~~~~l~~~~~~~~~-------~~~~vi~~Sa~~g~gi~ 176 (188)
T PF00009_consen 146 IKEKLLKEYGENGE-------EIVPVIPISALTGDGID 176 (188)
T ss_dssp HHHHHHHHTTSTTT-------STEEEEEEBTTTTBTHH
T ss_pred HHHHhccccccCcc-------ccceEEEEecCCCCCHH
Confidence 88444 44221100 01147899999999753
No 52
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.94 E-value=8.3e-25 Score=261.88 Aligned_cols=314 Identities=21% Similarity=0.249 Sum_probs=213.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+.++|+|+||+|||||||+++|.... +. ....+|+|+......+.+. ....++|||
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--v~-----------------~~e~~GIT~~ig~~~v~~~----~~~~i~~iD 141 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--VA-----------------QGEAGGITQHIGAYHVENE----DGKMITFLD 141 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--cc-----------------cccCCceeecceEEEEEEC----CCcEEEEEE
Confidence 355789999999999999999995321 10 0113567777766666662 122799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHH
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEV 297 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~ 297 (989)
||||.+|...+.++++.+|++|||||+.+|++.||.++++++...++|+++++||+|+...+ + .++.++
T Consensus 142 TPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~--------~---e~v~~~ 210 (587)
T TIGR00487 142 TPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN--------P---DRVKQE 210 (587)
T ss_pred CCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC--------H---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996432 1 122222
Q ss_pred HHHH--hhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 298 INNH--ISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 298 in~~--l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
++.. ....+ .... .++..||+.|.++ +
T Consensus 211 L~~~g~~~~~~---~~~~-------~~v~iSAktGeGI-----------------~------------------------ 239 (587)
T TIGR00487 211 LSEYGLVPEDW---GGDT-------IFVPVSALTGDGI-----------------D------------------------ 239 (587)
T ss_pred HHHhhhhHHhc---CCCc-------eEEEEECCCCCCh-----------------H------------------------
Confidence 2211 00000 0000 1233455443210 0
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHH--h
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVK--F 453 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~--~ 453 (989)
.| ++.+.. .
T Consensus 240 -------------------------------eL--------------------------------------l~~I~~~~~ 250 (587)
T TIGR00487 240 -------------------------------EL--------------------------------------LDMILLQSE 250 (587)
T ss_pred -------------------------------HH--------------------------------------HHhhhhhhh
Confidence 00 000000 0
Q ss_pred cCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCC
Q 001965 454 IPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPE 533 (989)
Q Consensus 454 lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~ 533 (989)
++. ..+++++|+.++|++.+.++.. |.++++||++|+|+.||.|.+ ++.
T Consensus 251 ~~~-------------------------l~~~~~~~~~~~V~ev~~~~g~-G~v~~~~V~~GtL~~Gd~iv~-~~~---- 299 (587)
T TIGR00487 251 VEE-------------------------LKANPNGQASGVVIEAQLDKGR-GPVATVLVQSGTLRVGDIVVV-GAA---- 299 (587)
T ss_pred hcc-------------------------ccCCCCCCceeEEEEEEEeCCC-cEEEEEEEEeCEEeCCCEEEE-CCC----
Confidence 000 1125668999999999988866 459999999999999999976 333
Q ss_pred CCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCc---------------------ccc
Q 001965 534 DEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDED---------------------VYI 592 (989)
Q Consensus 534 ~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~---------------------~~~ 592 (989)
..+|..++...| ..+++|.||++|.|.|++..-.-|++++....... ...
T Consensus 300 ------~~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~ 370 (587)
T TIGR00487 300 ------YGRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVT 370 (587)
T ss_pred ------ccEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 246777766554 46799999999999999875233788873111000 011
Q ss_pred ccc----cccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhH
Q 001965 593 FRP----LQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYL 653 (989)
Q Consensus 593 ~~~----~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhL 653 (989)
+.. ++-...+.+.+.|++.....+.+|.++|+++..++|.+.+. -.|.|.++-
T Consensus 371 ~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~--------~~~vG~i~~ 427 (587)
T TIGR00487 371 LDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI--------HSGVGGITE 427 (587)
T ss_pred hhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE--------EeecCCCch
Confidence 111 11112488999999999999999999999999999988653 356777653
No 53
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.94 E-value=2.5e-25 Score=258.95 Aligned_cols=142 Identities=23% Similarity=0.291 Sum_probs=111.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC----------
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS---------- 206 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~---------- 206 (989)
.+...||+++||+|||||||+.+|. + ..+|.+++|++||+|++.+...+.+..+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLt---g-------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~ 94 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALS---G-------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQ 94 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHh---C-------------CCcccchhhHHhCCchhccccccccccCcccCCccccc
Confidence 3456789999999999999999993 2 1246778999999999887665532100
Q ss_pred --C-C---------------CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC-cccchHHHHHHHHHcCCC-E
Q 001965 207 --N-S---------------KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-VMVNTERAIRHAIQERLP-I 266 (989)
Q Consensus 207 --~-~---------------~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg-v~~qt~~~l~~~~~~~ip-~ 266 (989)
. + -.+.++|||||||.+|..++.++++.+|+|+|||||.+| +++||.+++..+...+++ +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~i 174 (460)
T PTZ00327 95 SYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHI 174 (460)
T ss_pred ccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcE
Confidence 0 0 024799999999999999999999999999999999997 799999999998888885 7
Q ss_pred EEEEEcccccccccCCCchHHHHHHHHHHHHHHHHhhh
Q 001965 267 VVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISA 304 (989)
Q Consensus 267 ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~ 304 (989)
|+|+||||+... + .+....++++.++..
T Consensus 175 IVvlNKiDlv~~-------~---~~~~~~~ei~~~l~~ 202 (460)
T PTZ00327 175 IILQNKIDLVKE-------A---QAQDQYEEIRNFVKG 202 (460)
T ss_pred EEEEecccccCH-------H---HHHHHHHHHHHHHHh
Confidence 889999999731 1 134456666666643
No 54
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.4e-25 Score=252.17 Aligned_cols=280 Identities=21% Similarity=0.291 Sum_probs=211.8
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeeeEEE
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~ 202 (989)
..|...-|.+++||+++|||||+.+|++..|.+.. .|+......+.+|...+||+||+|+......|.
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34667789999999999999999999999888765 677777788999999999999999998888776
Q ss_pred eecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-------ccchHHHHHHHHHcCC-CEEEEEEccc
Q 001965 203 LEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-------MVNTERAIRHAIQERL-PIVVVVNKVD 274 (989)
Q Consensus 203 ~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-------~~qt~~~l~~~~~~~i-p~ilviNKiD 274 (989)
. +.+.++|||+|||.||..+++++...||.|||||||+.|. ..||+++...++..|+ .+||+|||||
T Consensus 252 s-----~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD 326 (603)
T KOG0458|consen 252 S-----KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMD 326 (603)
T ss_pred c-----CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccc
Confidence 4 7889999999999999999999999999999999999653 5899999999999998 7999999999
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhh
Q 001965 275 RLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEK 354 (989)
Q Consensus 275 ~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~ 354 (989)
...+. ..|++.|...++.+|...+...+....|.|+.| + .| -++..
T Consensus 327 ~V~Ws--------q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSG-------l-----------------~G--eNL~k 372 (603)
T KOG0458|consen 327 LVSWS--------QDRFEEIKNKLSSFLKESCGFKESSVKFIPISG-------L-----------------SG--ENLIK 372 (603)
T ss_pred ccCcc--------HHHHHHHHHHHHHHHHHhcCcccCCcceEeccc-------c-----------------cC--Ccccc
Confidence 99765 346778888999999554432334456777543 2 22 01100
Q ss_pred hhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHh
Q 001965 355 FASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRL 434 (989)
Q Consensus 355 ~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~ 434 (989)
. +....|.+..+
T Consensus 373 --------------------~---------------------------~~~~~l~~WY~--------------------- 384 (603)
T KOG0458|consen 373 --------------------I---------------------------EQENELSQWYK--------------------- 384 (603)
T ss_pred --------------------c---------------------------ccchhhhhhhc---------------------
Confidence 0 01112222221
Q ss_pred hhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEe
Q 001965 435 ACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYS 514 (989)
Q Consensus 435 v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~S 514 (989)
. .+||+.|-. +-.|.. .-+.||++-|+-++..+.. ++...|||-|
T Consensus 385 -------G-p~LL~~id~-~~~p~~-------------------------~~~kPl~ltIsdi~~~~~~-~~~i~gkies 429 (603)
T KOG0458|consen 385 -------G-PTLLSQIDS-FKIPER-------------------------PIDKPLRLTISDIYPLPSS-GVSISGKIES 429 (603)
T ss_pred -------C-ChHHHHHhh-ccCCCC-------------------------cccCCeEEEhhheeecCCC-eeEEEEEEec
Confidence 1 135666554 333321 1245999999999988865 4789999999
Q ss_pred ceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 515 GIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 515 GtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
|.|++||+|++.... ....|..|. +.-.+...+.|||-|.+.
T Consensus 430 G~iq~gqkl~i~~s~---------e~~~vk~l~----~~~~~~~~a~AGD~Vsl~ 471 (603)
T KOG0458|consen 430 GYIQPGQKLYIMTSR---------EDATVKGLT----SNDEPKTWAVAGDNVSLK 471 (603)
T ss_pred cccccCCEEEEecCc---------ceEEEEeee----cCCCcceeEeeCCEEEEe
Confidence 999999999997543 235566654 336678889999998763
No 55
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.4e-25 Score=239.23 Aligned_cols=174 Identities=23% Similarity=0.277 Sum_probs=140.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccc-----cCCCC-----C----CcceeccCccceeeeeEEEEeeeeEEEeecCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMST-----FDPNS-----E----KHTRYTDTRIDEQERRISIKAVPMSLVLEDSN 207 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~-----~g~~~-----~----~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~ 207 (989)
+++.+|++|.|||||+.+|++.+..+.+ ..+.. . .-.-..|-.+.|+|.||||..+...|..
T Consensus 8 RfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT---- 83 (431)
T COG2895 8 RFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST---- 83 (431)
T ss_pred eEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc----
Confidence 4889999999999999999999877643 11111 1 1122468889999999999998887766
Q ss_pred CCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEcccccccccCCCchH
Q 001965 208 SKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDRLITELKLPPKD 286 (989)
Q Consensus 208 ~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~el~l~p~~ 286 (989)
..++|.+.|||||..|...|..+.+-||.||++|||..|+..||+++--.+...++ .+++++||||+....
T Consensus 84 -~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~------- 155 (431)
T COG2895 84 -EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS------- 155 (431)
T ss_pred -ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-------
Confidence 67789999999999999999999999999999999999999999999988888898 688899999999754
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCceEEcCC----CCceeeccccccc
Q 001965 287 AYHKLRHTIEVINNHISAASTTAGNVQVIDPA----AGNVCFASASAGW 331 (989)
Q Consensus 287 ~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~----~gnV~f~Sa~~g~ 331 (989)
..+++.|.++.+.+...... ....+.|+ +.||+..|+.++|
T Consensus 156 -e~~F~~I~~dy~~fa~~L~~---~~~~~IPiSAl~GDNV~~~s~~mpW 200 (431)
T COG2895 156 -EEVFEAIVADYLAFAAQLGL---KDVRFIPISALLGDNVVSKSENMPW 200 (431)
T ss_pred -HHHHHHHHHHHHHHHHHcCC---CcceEEechhccCCcccccccCCCc
Confidence 23456677777777766432 22356666 3499999999999
No 56
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.93 E-value=8e-25 Score=265.00 Aligned_cols=121 Identities=27% Similarity=0.400 Sum_probs=100.5
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
..+.|+|+|+||+|||||||+++|....... ...+|+|.......+.+.. ++..+.++||
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-------------------~e~~GiTq~i~~~~v~~~~-~~~~~kItfi 300 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-------------------KEAGGITQKIGAYEVEFEY-KDENQKIVFL 300 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-------------------ccCCccccccceEEEEEEe-cCCceEEEEE
Confidence 3578999999999999999999996543321 1235677665555554431 2345889999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|||||..|...+.++++.+|++|||||+.+|++.||.++|+++...++|+|+|+||+|+..
T Consensus 301 DTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 301 DTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred ECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 57
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.93 E-value=1.2e-24 Score=265.60 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=124.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCC--CCCCcceeccCccceeeeeEEEEeeeeEEEeecC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDP--NSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS 206 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~--~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 206 (989)
.||+|+||+|||||||+++|++.++.+.. .|. ......+++|..++|++||+|+..+...+.+
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~--- 101 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT--- 101 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc---
Confidence 36999999999999999999999998862 121 1122246799999999999999998877766
Q ss_pred CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEcccccccccCCCch
Q 001965 207 NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDRLITELKLPPK 285 (989)
Q Consensus 207 ~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~el~l~p~ 285 (989)
++..++|||||||.+|...+..++..+|++|+|||+.+|++.||++++..+...++ |+|||+||+|+...+
T Consensus 102 --~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~------ 173 (632)
T PRK05506 102 --PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD------ 173 (632)
T ss_pred --CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccch------
Confidence 66789999999999999999999999999999999999999999999999988886 578899999996311
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001965 286 DAYHKLRHTIEVINNHISA 304 (989)
Q Consensus 286 ~~~~~l~~ii~~in~~l~~ 304 (989)
..++..+.++++.++..
T Consensus 174 --~~~~~~i~~~i~~~~~~ 190 (632)
T PRK05506 174 --QEVFDEIVADYRAFAAK 190 (632)
T ss_pred --hHHHHHHHHHHHHHHHH
Confidence 12245566777766654
No 58
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.4e-24 Score=227.44 Aligned_cols=322 Identities=20% Similarity=0.268 Sum_probs=213.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCC---------
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNS--------- 208 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~--------- 208 (989)
+.--||+.+||++||||||+.+| +| -++|.+.+|.+|||||+..+....+..|..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al---sG-------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~ 71 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL---SG-------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTT 71 (415)
T ss_pred CcceEeeeeeecccchhhheehh---hc-------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCccccc
Confidence 44579999999999999999999 22 357899999999999999877665543321
Q ss_pred ------------CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcCC-CEEEEEEccc
Q 001965 209 ------------KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQERL-PIVVVVNKVD 274 (989)
Q Consensus 209 ------------~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~i-p~ilviNKiD 274 (989)
--+.+.|+|+|||.-++..|.++.+..|+|||||+|++.. ++||.+++-.+.-.++ .+|++-||+|
T Consensus 72 ~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKID 151 (415)
T COG5257 72 EPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKID 151 (415)
T ss_pred CCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccc
Confidence 1257899999999999999999999999999999999865 8999999998888887 6889999999
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhh
Q 001965 275 RLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEK 354 (989)
Q Consensus 275 ~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~ 354 (989)
+...| .|.+.+++|.+.++..... .. | ++-.||+++
T Consensus 152 lV~~E------~AlE~y~qIk~FvkGt~Ae-------~a---P----IIPiSA~~~------------------------ 187 (415)
T COG5257 152 LVSRE------RALENYEQIKEFVKGTVAE-------NA---P----IIPISAQHK------------------------ 187 (415)
T ss_pred eecHH------HHHHHHHHHHHHhcccccC-------CC---c----eeeehhhhc------------------------
Confidence 99654 4444443333322222211 00 1 111122110
Q ss_pred hhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHh
Q 001965 355 FASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRL 434 (989)
Q Consensus 355 ~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~ 434 (989)
.
T Consensus 188 --------------------------------------------------------------~----------------- 188 (415)
T COG5257 188 --------------------------------------------------------------A----------------- 188 (415)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred hhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeecc--------CCCCce
Q 001965 435 ACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPK--------SDCSVF 506 (989)
Q Consensus 435 v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~--------~~~~~~ 506 (989)
+.+.|+++|.+++|.|.. |.+.|..++|..-|.. .-.|+
T Consensus 189 -------NIDal~e~i~~~IptP~r-------------------------d~~~~p~m~v~RSFDVNkPGt~~~~L~GG- 235 (415)
T COG5257 189 -------NIDALIEAIEKYIPTPER-------------------------DLDKPPRMYVARSFDVNKPGTPPEELKGG- 235 (415)
T ss_pred -------CHHHHHHHHHHhCCCCcc-------------------------CCCCCceEEEEeecccCCCCCCHHHccCc-
Confidence 234688999999999952 4555666666665542 22345
Q ss_pred eEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEe-EEEEeecCcceeccccCCCCEEEEe-eccceeeccceeecc
Q 001965 507 DAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVT-KLWIYQARDRIPISSAPPGSWVLIE-GVDASIMKSATLCNL 584 (989)
Q Consensus 507 ~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~-~l~~~~gr~~~~v~~a~AGnIv~I~-Gld~~~~k~~Tl~~~ 584 (989)
+.-|-+..|.|+.||++.+. ++-............|. ++.-++ .....+++|.+|-.++|. +||.+.+|+|.|++.
T Consensus 236 ViGGsl~~G~l~vGDEIEIr-PGi~v~k~~k~~~~pi~T~i~Sl~-ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~ 313 (415)
T COG5257 236 VIGGSLVQGVLRVGDEIEIR-PGIVVEKGGKTVWEPITTEIVSLQ-AGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQ 313 (415)
T ss_pred eecceeeeeeEecCCeEEec-CCeEeecCCceEEEEeeEEEEEEE-eCCeeeeeccCCceEEEecccCcchhhhhhhccc
Confidence 67789999999999999985 34222222222223332 222222 345678999999999995 599999999988863
Q ss_pred cCCCccccccccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecch
Q 001965 585 EYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGE 650 (989)
Q Consensus 585 ~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GE 650 (989)
-. =.|=. .|+....+-+|-. -|+++.-.+-...+.--.+||+++...|-
T Consensus 314 V~------G~pG~-lPpv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGt 362 (415)
T COG5257 314 VV------GKPGT-LPPVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGT 362 (415)
T ss_pred cc------cCCCC-CCCceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeec
Confidence 11 11111 1233344455421 13444443433434334578888877664
No 59
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.92 E-value=4.1e-25 Score=231.03 Aligned_cols=167 Identities=25% Similarity=0.314 Sum_probs=134.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.||+++||+|||||||+++|++.+. +.|+........+|+.+.|++||+|+.++.+.+.+ +++.++||||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-----~~~~i~~iDtPG 74 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-----ANRHYAHVDCPG 74 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecC-----CCeEEEEEECcC
Confidence 5899999999999999999998653 22333222245689999999999999998877755 677899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHHHHHH
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTIEVIN 299 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in 299 (989)
|.+|..++.++++.+|+|++|||+.+|++.+|+++++.+...++| +|+|+||||+... .+ .++.+.++++
T Consensus 75 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~------~~---~~~~~~~~i~ 145 (195)
T cd01884 75 HADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDD------EE---LLELVEMEVR 145 (195)
T ss_pred HHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCc------HH---HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 7799999999621 22 2345677888
Q ss_pred HHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 300 NHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 300 ~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
..+..... .|..-.+++.||+.|+.
T Consensus 146 ~~l~~~g~--------~~~~v~iipiSa~~g~n 170 (195)
T cd01884 146 ELLSKYGF--------DGDNTPIVRGSALKALE 170 (195)
T ss_pred HHHHHhcc--------cccCCeEEEeeCccccC
Confidence 88876431 12223367889998863
No 60
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.92 E-value=1.2e-23 Score=253.69 Aligned_cols=252 Identities=19% Similarity=0.310 Sum_probs=182.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++||+|||||||+++|. +. .+|..++|++||+|+..+...+... ++..++|||||||
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g~-------------~~dr~~eE~~rGiTI~l~~~~~~~~----~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---GV-------------NADRLPEEKKRGMTIDLGYAYWPQP----DGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---CC-------------CCccchhcccCCceEEeeeEEEecC----CCcEEEEEECCCH
Confidence 48999999999999999993 21 1466788999999998776555432 3456999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEcccccccccCCCchHHHHHHHHHHHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKVDRLITELKLPPKDAYHKLRHTIEVINN 300 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~ 300 (989)
.+|...+.+++..+|++++|||+.+|+++||.+++..+...++|. |+|+||+|+... + ++..+.+++..
T Consensus 62 e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-------~---~~~~v~~ei~~ 131 (614)
T PRK10512 62 EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-------A---RIAEVRRQVKA 131 (614)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-------H---HHHHHHHHHHH
Confidence 999999999999999999999999999999999999998889885 799999999631 1 24456677777
Q ss_pred HhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCC
Q 001965 301 HISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASG 380 (989)
Q Consensus 301 ~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~ 380 (989)
.+..... ...| ++..||+.|++ +
T Consensus 132 ~l~~~~~------~~~~----ii~VSA~tG~g-----------------I------------------------------ 154 (614)
T PRK10512 132 VLREYGF------AEAK----LFVTAATEGRG-----------------I------------------------------ 154 (614)
T ss_pred HHHhcCC------CCCc----EEEEeCCCCCC-----------------C------------------------------
Confidence 6654210 0011 34556655432 0
Q ss_pred cchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCChhhh
Q 001965 381 GERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDA 460 (989)
Q Consensus 381 ~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~ 460 (989)
+. |++.|.+ +|.|..
T Consensus 155 -------------------------~~--------------------------------------L~~~L~~-~~~~~~- 169 (614)
T PRK10512 155 -------------------------DA--------------------------------------LREHLLQ-LPEREH- 169 (614)
T ss_pred -------------------------HH--------------------------------------HHHHHHH-hhcccc-
Confidence 01 1122222 122210
Q ss_pred hhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceE
Q 001965 461 AARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTV 540 (989)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~ 540 (989)
+.++|+.+.|...|..+.. |.++.|+|.||+|+.||+|.+.+.+ ..
T Consensus 170 ------------------------~~~~~~rl~Id~vf~v~G~-GtVvtGtv~sG~l~~Gd~v~i~p~~---------~~ 215 (614)
T PRK10512 170 ------------------------AAQHRFRLAIDRAFTVKGA-GLVVTGTALSGEVKVGDTLWLTGVN---------KP 215 (614)
T ss_pred ------------------------CcCCCceEEEEEEeccCCC-eEEEEEEEecceEecCCEEEEcCCC---------Cc
Confidence 2356888888888877765 4599999999999999999998654 24
Q ss_pred EEEeEEEEeecCcceeccccCCCCEEEE--ee-ccc-eeeccceeec
Q 001965 541 KEVTKLWIYQARDRIPISSAPPGSWVLI--EG-VDA-SIMKSATLCN 583 (989)
Q Consensus 541 ~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~G-ld~-~~~k~~Tl~~ 583 (989)
.+|..|... ..++++|.||+.|+| .| ++. .+.+|+.|++
T Consensus 216 ~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~ 258 (614)
T PRK10512 216 MRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLA 258 (614)
T ss_pred EEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeC
Confidence 577776643 467899999999988 44 432 4556788876
No 61
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.91 E-value=3.1e-23 Score=240.54 Aligned_cols=125 Identities=27% Similarity=0.383 Sum_probs=104.5
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC----------
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS---------- 206 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~---------- 206 (989)
.+...||+++||+|||||||+++|. + .++|..++|++||+|+..+...+.+...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~---~-------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALT---G-------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYT 69 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhh---C-------------eecccCHhHHhcCcEEEecccccccccccccCcccccc
Confidence 3456799999999999999999992 1 2578889999999999987655444210
Q ss_pred -----C------CCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcCC-CEEEEEEcc
Q 001965 207 -----N------SKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQERL-PIVVVVNKV 273 (989)
Q Consensus 207 -----~------~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~i-p~ilviNKi 273 (989)
+ ...+.++|+|||||.+|..++.++++.+|++++|||+.+|+ ..++..++..+...++ |+++|+||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 0 01368999999999999999999999999999999999998 8999999998888877 589999999
Q ss_pred cccc
Q 001965 274 DRLI 277 (989)
Q Consensus 274 D~~~ 277 (989)
|+..
T Consensus 150 Dl~~ 153 (411)
T PRK04000 150 DLVS 153 (411)
T ss_pred cccc
Confidence 9973
No 62
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.91 E-value=1.1e-22 Score=236.09 Aligned_cols=123 Identities=29% Similarity=0.388 Sum_probs=103.1
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec-----------C-
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED-----------S- 206 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~-----------~- 206 (989)
...||+++||+|||||||+++|. + .++|..++|++||+|+..+...+.+.. .
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt---~-------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 66 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT---G-------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTE 66 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh---C-------------eecccCHhHHHcCceeEecccccccccccccCcccccccc
Confidence 34689999999999999999992 1 236888999999999998766554320 0
Q ss_pred ---CC------CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcCC-CEEEEEEcccc
Q 001965 207 ---NS------KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQERL-PIVVVVNKVDR 275 (989)
Q Consensus 207 ---~~------~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~i-p~ilviNKiD~ 275 (989)
+. ..+.++|||||||.+|...+.++++.+|+||+|||+.+|+ +.||.+++..+...++ |+++++||+|+
T Consensus 67 ~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 67 PVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 11 2468999999999999999999999999999999999998 8999999998888876 58999999998
Q ss_pred cc
Q 001965 276 LI 277 (989)
Q Consensus 276 ~~ 277 (989)
..
T Consensus 147 ~~ 148 (406)
T TIGR03680 147 VS 148 (406)
T ss_pred CC
Confidence 73
No 63
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.90 E-value=1.9e-23 Score=221.16 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=123.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCccc--ccC----------CCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMS--TFD----------PNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSK 209 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~--~~g----------~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~ 209 (989)
||||+||+|||||||+++|++.++.+. +++ .......+++|..+.|++||+|+.+....+.+ +
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-----~ 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-----P 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-----C
Confidence 599999999999999999999999876 221 11113467899999999999999998887776 5
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHH
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAY 288 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~ 288 (989)
+..++|+|||||.+|..++..+++.+|++|+|||+.+|+..+++.++..+...++| +|+|+||+|+...+ .+
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~-----~~-- 148 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS-----EE-- 148 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC-----HH--
Confidence 67899999999999999999999999999999999999999999988888877765 67799999996321 12
Q ss_pred HHHHHHHHHHHHHhhhh
Q 001965 289 HKLRHTIEVINNHISAA 305 (989)
Q Consensus 289 ~~l~~ii~~in~~l~~~ 305 (989)
.+..+.++++.++..+
T Consensus 149 -~~~~i~~~~~~~~~~~ 164 (208)
T cd04166 149 -VFEEIVADYLAFAAKL 164 (208)
T ss_pred -HHHHHHHHHHHHHHHc
Confidence 2344667777666543
No 64
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=3.6e-22 Score=240.38 Aligned_cols=132 Identities=29% Similarity=0.419 Sum_probs=110.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+++||+|||||||+++|... .+|..++|++||+|+......+.+ +++.++|||||||
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~----------------~~d~~~eE~~rGiTid~~~~~~~~-----~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI----------------AADRLPEEKKRGMTIDLGFAYFPL-----PDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc----------------cCcCChhHhcCCceEEeEEEEEEe-----CCEEEEEEECCCH
Confidence 7999999999999999999421 035567788999999887766665 4488999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHHHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINN 300 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~ 300 (989)
.+|...+.+++..+|++|+|||+.+|++.||.+++..+...++| +|+|+||+|+... +. +..+.+++..
T Consensus 61 e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-------~~---~~~~~~ei~~ 130 (581)
T TIGR00475 61 EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-------EE---IKRTEMFMKQ 130 (581)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH-------HH---HHHHHHHHHH
Confidence 99999999999999999999999999999999999999889999 9999999999731 21 3345566666
Q ss_pred Hhhh
Q 001965 301 HISA 304 (989)
Q Consensus 301 ~l~~ 304 (989)
++..
T Consensus 131 ~l~~ 134 (581)
T TIGR00475 131 ILNS 134 (581)
T ss_pred HHHH
Confidence 6654
No 65
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.90 E-value=2.5e-23 Score=221.99 Aligned_cols=172 Identities=22% Similarity=0.255 Sum_probs=134.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCC--C-----CCC-----cceeccCccceeeeeEEEEeeeeEEEeecCCCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDP--N-----SEK-----HTRYTDTRIDEQERRISIKAVPMSLVLEDSNSK 209 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~--~-----~~~-----~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~ 209 (989)
||+|+||+|||||||+++|++.+|.+.+.+. . ..+ ..+++|+.++|++||+|+.+....+.+ +
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-----~ 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-----E 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-----C
Confidence 7999999999999999999999998865431 0 011 124789999999999999999999887 6
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCC-------CcccchHHHHHHHHHcCC-CEEEEEEcccccccccC
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE-------GVMVNTERAIRHAIQERL-PIVVVVNKVDRLITELK 281 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~e-------gv~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~el~ 281 (989)
++.+++||||||.+|..++..+++.+|++|+|||+.+ ++..++.+++..+...++ |+++|+||+|+...+.
T Consensus 76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~- 154 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNW- 154 (219)
T ss_pred CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccc-
Confidence 7899999999999999999999999999999999998 577899999988877774 7888999999973210
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 282 LPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 282 l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
.-..+..++++++.++..... .+..-.+++.||+.|.+
T Consensus 155 -----~~~~~~~i~~~l~~~l~~~~~--------~~~~~~ii~iSA~tg~g 192 (219)
T cd01883 155 -----SEERYDEIKKELSPFLKKVGY--------NPKDVPFIPISGLTGDN 192 (219)
T ss_pred -----cHHHHHHHHHHHHHHHHHcCC--------CcCCceEEEeecCcCCC
Confidence 011245677888877765321 11112356778887765
No 66
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.88 E-value=5e-23 Score=183.78 Aligned_cols=80 Identities=76% Similarity=1.230 Sum_probs=77.3
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecC
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||||.|+|+||++++|+|+++|++|||+|+++++.+|+.+++|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998888887779999999999999999999999999999999999999986
No 67
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.3e-21 Score=214.09 Aligned_cols=119 Identities=31% Similarity=0.476 Sum_probs=103.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.|.+.|.|.||+|||||||+|+|...+-+-. ..-|||.+.+..+..++ ++..++|+|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-------------------E~GGITQhIGAF~V~~p----~G~~iTFLD 207 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-------------------EAGGITQHIGAFTVTLP----SGKSITFLD 207 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh-------------------hcCCccceeceEEEecC----CCCEEEEec
Confidence 3678899999999999999999964332211 13578888888777775 347799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITE 279 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~e 279 (989)
||||.-|.....++.+.+|.+||||.|.+|+++||.+.+++++..++|+|++|||||+...+
T Consensus 208 TPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 208 TPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN 269 (683)
T ss_pred CCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998654
No 68
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.6e-20 Score=211.71 Aligned_cols=119 Identities=30% Similarity=0.427 Sum_probs=100.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
|.+-|+|+||+|||||||+|.+...+-+ .+ ..-|||.+.....+.+... +...++||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va--------~~-----------EaGGITQhIGA~~v~~~~~--~~~~itFiDT 62 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA--------AG-----------EAGGITQHIGAYQVPLDVI--KIPGITFIDT 62 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc--------cc-----------cCCceeeEeeeEEEEeccC--CCceEEEEcC
Confidence 4567999999999999999999543221 11 1357888888877776321 3356999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~ 278 (989)
|||.-|+....++..++|.||||||+.+|+++||.+.+++++..++|+++++||||+...
T Consensus 63 PGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 63 PGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA 122 (509)
T ss_pred CcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999843
No 69
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.6e-20 Score=206.54 Aligned_cols=115 Identities=30% Similarity=0.390 Sum_probs=103.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+..||++||||||+.+|- + ..+|..++|++||+|++.+...+.. .++.+.|||+|||
T Consensus 2 ii~t~GhidHgkT~L~~alt---g-------------~~~d~l~EekKRG~TiDlg~~y~~~-----~d~~~~fIDvpgh 60 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G-------------GVTDRLPEEKKRGITIDLGFYYRKL-----EDGVMGFIDVPGH 60 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---c-------------cccccchhhhhcCceEeeeeEeccC-----CCCceEEeeCCCc
Confidence 58999999999999999882 2 2257789999999999988776655 5668999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKiD~~~ 277 (989)
.+|...+.+++...|+|+||||+.+|+++||.+++..+...+++. ++|+||+|+..
T Consensus 61 ~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d 117 (447)
T COG3276 61 PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD 117 (447)
T ss_pred HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc
Confidence 999999999999999999999999999999999999999999976 99999999984
No 70
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.85 E-value=1e-19 Score=218.79 Aligned_cols=132 Identities=28% Similarity=0.339 Sum_probs=88.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCC-CcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~-~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.|...|+|+||+|||||||+++|........+.|.... -+..+.+....++.++.+.+.....+ +-..++|+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~i 76 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKL-------KIPGLLFI 76 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccc-------ccCCEEEE
Confidence 34557999999999999999999543221111110000 00001111111111111111000000 00127999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|||||.+|...+.++++.+|++|+|||+.+|++.+|.++++++...++|+++++||+|+.
T Consensus 77 DTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 77 DTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred ECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 999999999999999999999999999999999999999999999999999999999985
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=1.5e-20 Score=196.57 Aligned_cols=170 Identities=32% Similarity=0.494 Sum_probs=132.0
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+||||+++|+.|+|||||+++|+..++.+...+. ...+.+|+.+.|..+|+|+......+.+ +.+.++|+||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~---~~~~~~~~~~~e~~~g~t~~~~~~~~~~-----~~~~~~l~Dt 72 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE---VEERVMDSNDLERERGITILAKNTAVTY-----KDTKINIVDT 72 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc---ccccccccchhHHhcccccccceeEEEE-----CCEEEEEEEC
Confidence 4899999999999999999999987665543211 1235678888899999999887777766 6788999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHH
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVI 298 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~i 298 (989)
|||.+|...+..+++.+|++++|+|+.++...++..+++.+...++|+++|+||+|+...+ ...+++++
T Consensus 73 pG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-----------~~~~~~~~ 141 (194)
T cd01891 73 PGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-----------PEEVVDEV 141 (194)
T ss_pred CCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-----------HHHHHHHH
Confidence 9999999999999999999999999999988888888888888899999999999996321 23456666
Q ss_pred HHHhhhhcccCCCceEEcCCCCceeecccccccee
Q 001965 299 NNHISAASTTAGNVQVIDPAAGNVCFASASAGWSF 333 (989)
Q Consensus 299 n~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~f 333 (989)
...+...... .. ...-.+.+.||+.||+.
T Consensus 142 ~~~~~~~~~~----~~--~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 142 FDLFIELGAT----EE--QLDFPVLYASAKNGWAS 170 (194)
T ss_pred HHHHHHhCCc----cc--cCccCEEEeehhccccc
Confidence 6665432110 00 01114678899988763
No 72
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=7.1e-20 Score=188.02 Aligned_cols=132 Identities=36% Similarity=0.578 Sum_probs=115.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
|||+++||+|+|||||+++|+...+.+.+.+ ....+.|+...|+++|+|++...+.+.+...+++++.++|+||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G 76 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE----MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPG 76 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC----CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCC
Confidence 8999999999999999999999887765311 225678888999999999988877777754455788899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+.
T Consensus 77 ~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 77 HVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred ChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 99999999999999999999999999988888888888777899999999999985
No 73
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.5e-19 Score=190.28 Aligned_cols=147 Identities=20% Similarity=0.325 Sum_probs=115.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec----CCCCceEEEE
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED----SNSKSYLCNI 215 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~----~~~~~~~inl 215 (989)
--|++|+||+|+|||||+.+|.... + +..-|.++...+||||.+.+...+.... ..+....+++
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~-------S-----TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tl 74 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG-------S-----TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTL 74 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc-------c-----chhhccCCcccccceeEeecceeeecccccccCccccceeEE
Confidence 3689999999999999999995321 1 3445888899999999988766654322 1234567899
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
+|||||..+...++.+....|.+++|||+..|.+.||.+.+-.........++|+||+|.+-. ....-++.+.-
T Consensus 75 vDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE------~qr~ski~k~~ 148 (522)
T KOG0461|consen 75 VDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE------NQRASKIEKSA 148 (522)
T ss_pred EeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc------hhhhhHHHHHH
Confidence 999999999999999999999999999999999999999988877777899999999998732 23333444444
Q ss_pred HHHHHHhhh
Q 001965 296 EVINNHISA 304 (989)
Q Consensus 296 ~~in~~l~~ 304 (989)
..++..|..
T Consensus 149 kk~~KtLe~ 157 (522)
T KOG0461|consen 149 KKVRKTLES 157 (522)
T ss_pred HHHHHHHHh
Confidence 555555543
No 74
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=8.4e-20 Score=199.26 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=141.0
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeeeEEEe
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVL 203 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~ 203 (989)
.|....|+.++||+++||||+-..|++.++.++. .++..+..++++|+..+|+++|-|+..+...|..
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 4677889999999999999999999999888754 3566667788999999999999999988888877
Q ss_pred ecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-------ccchHHHHHHHHHcCC-CEEEEEEcccc
Q 001965 204 EDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-------MVNTERAIRHAIQERL-PIVVVVNKVDR 275 (989)
Q Consensus 204 ~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-------~~qt~~~l~~~~~~~i-p~ilviNKiD~ 275 (989)
....++++|+|||-.|..+++.++..||.++||++|+-|- ..||+++..++...++ ..|+++||||-
T Consensus 155 -----e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 155 -----ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 229 (501)
T ss_pred -----cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccC
Confidence 5678999999999999999999999999999999998653 4699999999988887 78999999999
Q ss_pred cccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCC
Q 001965 276 LITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPA 318 (989)
Q Consensus 276 ~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~ 318 (989)
...++. .+. ++++.+.+..+|............+.|.
T Consensus 230 PtvnWs---~eR---y~E~~~k~~~fLr~~g~n~~~d~~f~p~ 266 (501)
T KOG0459|consen 230 PTVNWS---NER---YEECKEKLQPFLRKLGFNPKPDKHFVPV 266 (501)
T ss_pred CccCcc---hhh---HHHHHHHHHHHHHHhcccCCCCceeeec
Confidence 877653 344 4557777777776443333344556664
No 75
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.82 E-value=2e-20 Score=169.32 Aligned_cols=83 Identities=35% Similarity=0.540 Sum_probs=77.8
Q ss_pred eeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceee
Q 001965 843 LMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAI 922 (989)
Q Consensus 843 LlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~ 922 (989)
||||||.|+|.||++++|.|+++|++|||+|.+.++.. +.+.|+|.+|++++|||.++||+.|+|+|++++.|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 69999999999999999999999999999999877543 4799999999999999999999999999999999999999
Q ss_pred cCCCC
Q 001965 923 VPGDP 927 (989)
Q Consensus 923 vp~dp 927 (989)
||+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99765
No 76
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.81 E-value=1.6e-20 Score=171.39 Aligned_cols=87 Identities=38% Similarity=0.597 Sum_probs=80.5
Q ss_pred eeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeecccee
Q 001965 842 RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWA 921 (989)
Q Consensus 842 rLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~ 921 (989)
+||||||.++|.||++++|+|+++|++|||.|++.... ++..+.|+|.+|+++++||.++||+.|+|+|.+++.|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999998877 45689999999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 001965 922 IVPGDPLD 929 (989)
Q Consensus 922 ~vp~dp~~ 929 (989)
++++++++
T Consensus 80 ~~~~~~~~ 87 (89)
T PF00679_consen 80 PVPGDILD 87 (89)
T ss_dssp EESHHHHH
T ss_pred ECCCChhh
Confidence 99998765
No 77
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=189.28 Aligned_cols=279 Identities=23% Similarity=0.361 Sum_probs=199.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC----------
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS---------- 206 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~---------- 206 (989)
+....+|+..||+|||||||+.+|. +|... ...-....|.|-.+.|.+||.|-..+..-+-+.+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~D---DG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--TGRLD---DGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--ecCCC---CCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 3445689999999999999999995 45443 12222345889999999999877655444444321
Q ss_pred --------CCCceEEEEeeCCCcccchHHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 207 --------NSKSYLCNIMDSPGHVNFSDEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 207 --------~~~~~~inlIDTPGh~df~~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+..+..+.|+||-||..+...+++++- ..|..+|||.|.+|++..|++++-.+....+|+|++++|+|..
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC
Confidence 123578999999999999999999985 5799999999999999999999999999999999999999998
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhh
Q 001965 277 ITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFA 356 (989)
Q Consensus 277 ~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~ 356 (989)
|.+ +++.++++|.++|..... .+...-
T Consensus 269 -------~dd---r~~~v~~ei~~~Lk~v~R----ip~~vk--------------------------------------- 295 (527)
T COG5258 269 -------PDD---RFQGVVEEISALLKRVGR----IPLIVK--------------------------------------- 295 (527)
T ss_pred -------cHH---HHHHHHHHHHHHHHHhcc----cceeee---------------------------------------
Confidence 233 356789999888876220 011000
Q ss_pred hhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHH-HHHHHHhcCCCCCHHHHHhcchHHHHhh
Q 001965 357 SRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKS-VEATLAELGVTLSNATYRLNVRPLLRLA 435 (989)
Q Consensus 357 ~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~-L~~~l~~~~~~l~~~el~~~~~~ll~~v 435 (989)
+.++. +....-+ +=+.+
T Consensus 296 ----------------------------------------------~~~d~v~aa~a~k----------------~~~~v 313 (527)
T COG5258 296 ----------------------------------------------DTDDVVLAAKAMK----------------AGRGV 313 (527)
T ss_pred ----------------------------------------------ccchhHHhhhhhh----------------cCCce
Confidence 00000 0000000 00124
Q ss_pred hcccccCh-----HHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEE
Q 001965 436 CSSVFGSA-----SGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFG 510 (989)
Q Consensus 436 ~~~~~g~~-----~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~ 510 (989)
.|.|.-++ -.+|+-+..+||.-. ..+..+||.+||.|+|+....| .++.|
T Consensus 314 vPi~~tSsVTg~GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVG-tVvsG 368 (527)
T COG5258 314 VPIFYTSSVTGEGLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVG-TVVSG 368 (527)
T ss_pred EEEEEEecccCccHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeE-EEEee
Confidence 45554442 357777777777431 1256789999999999998775 48899
Q ss_pred EEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 511 RVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 511 RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
-|-||+|+.||+|++ ||. ....+...+|+.|-+- +..|++|.||+|+.+.
T Consensus 369 sV~~G~l~~gd~vll-GP~----~~G~fr~v~vkSIemh----~~rvdsa~aG~iig~A 418 (527)
T COG5258 369 SVKSGILHVGDTVLL-GPF----KDGKFREVVVKSIEMH----HYRVDSAKAGSIIGIA 418 (527)
T ss_pred eEEeeeeccCCEEEE-ccC----CCCcEEEEEEEEEEEe----eEEeccccCCcEEEEE
Confidence 999999999999986 554 2345677788887643 3458999999999763
No 78
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=3.5e-19 Score=187.84 Aligned_cols=156 Identities=23% Similarity=0.296 Sum_probs=119.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC--------------
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS-------------- 206 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-------------- 206 (989)
+||||+||.|||||||+++|. ..++|....|++||+|++.+...+.|...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~----------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS----------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSK 64 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh----------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccc
Confidence 589999999999999999992 12357788999999999998888876410
Q ss_pred --------C------CCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCC-CcccchHHHHHHHHHcCC-CEEEEE
Q 001965 207 --------N------SKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE-GVMVNTERAIRHAIQERL-PIVVVV 270 (989)
Q Consensus 207 --------~------~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~e-gv~~qt~~~l~~~~~~~i-p~ilvi 270 (989)
+ ...+.++|||||||.+|..++..+++.+|++|+|||+.+ +...++...+..+...++ |+++|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivv 144 (203)
T cd01888 65 EDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQ 144 (203)
T ss_pred cccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEE
Confidence 0 012789999999999999999999999999999999998 467889989888877776 689999
Q ss_pred EcccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 271 NKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 271 NKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
||+|+... . ++...+++++..+..+. ...-.+++.||+.|.+
T Consensus 145 NK~Dl~~~-------~---~~~~~~~~i~~~~~~~~----------~~~~~i~~vSA~~g~g 186 (203)
T cd01888 145 NKIDLVKE-------E---QALENYEQIKKFVKGTI----------AENAPIIPISAQLKYN 186 (203)
T ss_pred EchhccCH-------H---HHHHHHHHHHHHHhccc----------cCCCcEEEEeCCCCCC
Confidence 99998631 1 12334566666554321 0011356789988765
No 79
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.79 E-value=1.8e-19 Score=161.21 Aligned_cols=80 Identities=63% Similarity=1.101 Sum_probs=76.6
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecC
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||||.|+|+||++++|+|+++|++|||.|++++..++++.+.|+|.+|++++|||.++||++|+|+|+|++.|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999998877666679999999999999999999999999999999999999986
No 80
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.79 E-value=1.2e-19 Score=175.21 Aligned_cols=100 Identities=30% Similarity=0.448 Sum_probs=86.6
Q ss_pred hhhccchhhhccceEEeCCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecC
Q 001965 735 KTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAP 814 (989)
Q Consensus 735 ~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~ 814 (989)
.+++||+...++.+|+++|...++|+|.|++.+..+++.+. ++|++||+||+++||||||||+||+|+|.|+.++.
T Consensus 21 ~~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~----~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~ 96 (120)
T PF03764_consen 21 KRQYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQ----DAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE 96 (120)
T ss_dssp EEECTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGH----HHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T
T ss_pred HHHhCCCCceEEEEEEEeecccCCceeeeccccccccHHHH----HHHhhhhhheecccccCCCceEEEEEEEEEeeecC
Confidence 34689999999999999998878999999998877776555 67779999999999999999999999999999875
Q ss_pred CCcccCCCchHHHHHHHHHHHHhhcC
Q 001965 815 EPLHRGSGQIIPTARRVAYSAFLMAT 840 (989)
Q Consensus 815 ~~~~~~~gqiip~~r~a~~~a~~~A~ 840 (989)
.+.+.+++++++++||++||++|+
T Consensus 97 --~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 97 --VDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp --TTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred --CcCCHHHHHHHHHHHHHHHHHhcC
Confidence 566778999999999999999985
No 81
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.78 E-value=2.1e-19 Score=159.84 Aligned_cols=78 Identities=28% Similarity=0.524 Sum_probs=74.1
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecC
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||||.|+|.||++++|+|+++|++|||+|++++... +.+.|+|.+|++++|||.++||+.|+|+|++++.|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999887644 479999999999999999999999999999999999999986
No 82
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.78 E-value=3e-19 Score=158.88 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=73.5
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecC
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||||.|+|+||++++|+|+++|++|||+|.+.+... +.+.|+|.+|++++|||.++||+.|+|+|++++.|+||++|.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999876543 579999999999999999999999999999999999999874
No 83
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.77 E-value=3.8e-19 Score=158.30 Aligned_cols=78 Identities=35% Similarity=0.543 Sum_probs=74.1
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecC
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||||+|+|+||++++|+|+++|++|||+|+++++.. +.+.|+|.+|++++|||.++||+.|+|+|++++.|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999887653 479999999999999999999999999999999999999986
No 84
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.77 E-value=3.3e-17 Score=196.32 Aligned_cols=119 Identities=29% Similarity=0.365 Sum_probs=88.8
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC------------
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS------------ 206 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~------------ 206 (989)
|..-|+|+||+|||||||+++|....-... . .+|+|.......+.+...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~-----e--------------~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~ 63 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKR-----E--------------AGGITQHIGATEIPMDVIEGICGDLLKKFK 63 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccc-----c--------------CCceecccCeeEeeeccccccccccccccc
Confidence 345699999999999999999975432111 1 111222111111111100
Q ss_pred -CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 207 -NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 207 -~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+.+...++|+|||||..|...+.++++.+|++|+|+|+.+|++.+|.++++++...++|+++++||+|+.
T Consensus 64 v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 64 IRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 0011248999999999999999999999999999999999999999999999998999999999999986
No 85
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=4.3e-18 Score=177.74 Aligned_cols=124 Identities=26% Similarity=0.391 Sum_probs=105.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC---------CCCceE
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS---------NSKSYL 212 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~---------~~~~~~ 212 (989)
||+++||+|||||||+++|+...+ ...+|....|++||+|+.....++.+... +++++.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQ 69 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc------------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCce
Confidence 799999999999999999975321 23467778899999999988877777421 234789
Q ss_pred EEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 213 inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
++++|||||.+|...+..+++.+|++++|+|+.+|.+.++.+.+..+...++|+++|+||+|+..
T Consensus 70 ~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 70 ITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99999999999999999999999999999999999988888777777777899999999999973
No 86
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.76 E-value=8.7e-19 Score=156.35 Aligned_cols=79 Identities=43% Similarity=0.627 Sum_probs=74.9
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecC
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP 924 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp 924 (989)
||||.|+|+||++++|+|+++|++|||+|.++.+.+ ++++.|+|++|++++|||.++||+.|+|+|++++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999877654 4589999999999999999999999999999999999999985
No 87
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=5.5e-18 Score=181.13 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=114.8
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec-----------------
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED----------------- 205 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~----------------- 205 (989)
|+++||.++|||||+++|.. +... ........+++.+..|.+||+|...+...+.+..
T Consensus 2 v~~~G~~~~GKttl~~~~~~--~~~~---~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQ--GELD---NGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred EEEECCCCCCHHHHHHHHHh--CCcC---CCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 88999999999999999974 2222 1122234578999999999998754432222211
Q ss_pred --CCCCceEEEEeeCCCcccchHHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccC
Q 001965 206 --SNSKSYLCNIMDSPGHVNFSDEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELK 281 (989)
Q Consensus 206 --~~~~~~~inlIDTPGh~df~~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~ 281 (989)
+...++.++|||||||.+|..++.++++ .+|++++|||+.+|++.++.+++.++...++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~---- 152 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP---- 152 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC----
Confidence 1224678999999999999999999986 79999999999999999999999999999999999999999862
Q ss_pred CCchHHHHHHHHHHHHHHHHhhh
Q 001965 282 LPPKDAYHKLRHTIEVINNHISA 304 (989)
Q Consensus 282 l~p~~~~~~l~~ii~~in~~l~~ 304 (989)
.+ ++..+++++...+..
T Consensus 153 ---~~---~~~~~~~~l~~~L~~ 169 (224)
T cd04165 153 ---AN---ILQETLKDLKRILKV 169 (224)
T ss_pred ---HH---HHHHHHHHHHHHhcC
Confidence 12 245677777777753
No 88
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.73 E-value=6.2e-18 Score=150.77 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=73.2
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeec
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIV 923 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~v 923 (989)
|||+.++|.||++++|+|+++|++|||+|.+.+... ++.+.|+|.+|++++|||.++||+.|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDG-NGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECC-CCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999877643 357999999999999999999999999999999999999875
No 89
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=3.9e-17 Score=168.45 Aligned_cols=174 Identities=30% Similarity=0.460 Sum_probs=129.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+|+|.+|+|||||+++|+........ ......++++....+..+++|+......+.+ ....++||||||+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIER---DGTVEETFLDVLKEERERGITIKSGVATFEW-----PDRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCc---CCceecccccCCHHHHHcCCCeecceEEEee-----CCEEEEEEeCCCc
Confidence 5999999999999999999887654431 1112234566777788888888776666655 4678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNH 301 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~ 301 (989)
.+|......+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+... .+ +...++++...
T Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~------~~----~~~~~~~~~~~ 142 (189)
T cd00881 73 EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE------ED----LEEVLREIKEL 142 (189)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch------hc----HHHHHHHHHHH
Confidence 999999999999999999999999999888888888888889999999999999841 11 23355555555
Q ss_pred hhhhccc-CCCceEEcCCCCceeecccccccee
Q 001965 302 ISAASTT-AGNVQVIDPAAGNVCFASASAGWSF 333 (989)
Q Consensus 302 l~~~~~~-~~~~~~~~P~~gnV~f~Sa~~g~~f 333 (989)
+...... ......+.+...++.+.||+.||++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi 175 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGV 175 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCH
Confidence 5442210 0011222344556888999999863
No 90
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.73 E-value=6.6e-18 Score=148.75 Aligned_cols=73 Identities=36% Similarity=0.573 Sum_probs=67.6
Q ss_pred CcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcc
Q 001965 600 TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVAD 673 (989)
Q Consensus 600 ~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~ 673 (989)
|+|+++++|+|.+++|.+||.+||++|.++||++.+.. ++|||++|+||||+|||+++++|+++|+ ++|++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~-v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFG-VEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTC-EBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHC-CeeEecC
Confidence 78999999999999999999999999999999999876 7899999999999999999999999997 9999873
No 91
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.72 E-value=3.5e-17 Score=150.95 Aligned_cols=94 Identities=55% Similarity=0.957 Sum_probs=85.5
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 490 LMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 490 l~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
++++|||+.++++.+++++|+|||||+|++||.|++++++++.+++++...++|++||.++|.++.++++|.|||||+|.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999988788999999999999999999998877665555667789999999999999999999999999999
Q ss_pred eccceeeccceeec
Q 001965 570 GVDASIMKSATLCN 583 (989)
Q Consensus 570 Gld~~~~k~~Tl~~ 583 (989)
|+++.++|++|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999999888863
No 92
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1e-17 Score=176.65 Aligned_cols=283 Identities=19% Similarity=0.257 Sum_probs=186.5
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCC--------
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNS-------- 208 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~-------- 208 (989)
++...||+.+||+.|||||++.++ +|.. +.+ .+.|-+|.|||+..+....+..++.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAi---SGv~---------Tvr----FK~ELERNITIKLGYANAKIYkc~~~kCprP~c 98 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAI---SGVH---------TVR----FKNELERNITIKLGYANAKIYKCDDPKCPRPGC 98 (466)
T ss_pred heeeeeecceeccccCcceeeeee---ccce---------EEE----ehhhhhcceeEEeccccceEEecCCCCCCCcch
Confidence 456789999999999999999988 3321 123 3568899999999888776654320
Q ss_pred ---------------------C---ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcC
Q 001965 209 ---------------------K---SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQER 263 (989)
Q Consensus 209 ---------------------~---~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~ 263 (989)
+ -+++.|+|||||.-++..|..+....|+|+|+|.+.|.. ++||.+++....-++
T Consensus 99 y~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~ 178 (466)
T KOG0466|consen 99 YRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK 178 (466)
T ss_pred hhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh
Confidence 0 146789999999999999999999999999999999865 899999998887777
Q ss_pred C-CEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHh
Q 001965 264 L-PIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLY 342 (989)
Q Consensus 264 i-p~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y 342 (989)
+ .++++-||+|+...+ .|.++. ++|..++.... .+...+.| .||+
T Consensus 179 LkhiiilQNKiDli~e~------~A~eq~----e~I~kFi~~t~---ae~aPiiP-------isAQ-------------- 224 (466)
T KOG0466|consen 179 LKHIIILQNKIDLIKES------QALEQH----EQIQKFIQGTV---AEGAPIIP-------ISAQ-------------- 224 (466)
T ss_pred hceEEEEechhhhhhHH------HHHHHH----HHHHHHHhccc---cCCCceee-------ehhh--------------
Confidence 6 678889999998533 333322 33333332210 00001111 1111
Q ss_pred hhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHH
Q 001965 343 VKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNA 422 (989)
Q Consensus 343 ~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~ 422 (989)
T Consensus 225 -------------------------------------------------------------------------------- 224 (466)
T KOG0466|consen 225 -------------------------------------------------------------------------------- 224 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcchHHHHhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCC
Q 001965 423 TYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSD 502 (989)
Q Consensus 423 el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~ 502 (989)
++. +.+.+++.|++++|-|.... ...+-.-.+++.|-+.|-.- .+.-
T Consensus 225 -lky---------------NId~v~eyivkkIPvPvRdf-----------~s~prlIVIRSFDVNkPG~e------v~~l 271 (466)
T KOG0466|consen 225 -LKY---------------NIDVVCEYIVKKIPVPVRDF-----------TSPPRLIVIRSFDVNKPGSE------VDDL 271 (466)
T ss_pred -hcc---------------ChHHHHHHHHhcCCCCcccc-----------CCCCcEEEEEeeccCCCCch------hhcc
Confidence 111 12356788889999886311 11122346677777777542 2223
Q ss_pred CCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEee-ccceeecccee
Q 001965 503 CSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEG-VDASIMKSATL 581 (989)
Q Consensus 503 ~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~G-ld~~~~k~~Tl 581 (989)
.|+ ++-|-+..|.|+.||++.+...-.+.++..+.++..|-.-.+..-.++.+++.|.+|-.+++.- +|.+..+.+-|
T Consensus 272 kGg-vaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrl 350 (466)
T KOG0466|consen 272 KGG-VAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRL 350 (466)
T ss_pred cCc-cccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHH
Confidence 445 8899999999999999998543333344445554443322222235677889999998887743 77666666666
Q ss_pred ec
Q 001965 582 CN 583 (989)
Q Consensus 582 ~~ 583 (989)
++
T Consensus 351 VG 352 (466)
T KOG0466|consen 351 VG 352 (466)
T ss_pred HH
Confidence 54
No 93
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.68 E-value=6.2e-16 Score=155.69 Aligned_cols=115 Identities=30% Similarity=0.363 Sum_probs=91.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+++|++|+|||||+++|.... .+....+..+++|+......+.+. .++.+++|||||+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~----------------~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~~DtpG~ 61 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE----------------TDRLPEEKKRGITIDLGFAYLDLP----SGKRLGFIDVPGH 61 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc----------------cccchhhhccCceEEeeeEEEEec----CCcEEEEEECCCh
Confidence 79999999999999999995321 112233445667776655555542 1568999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~~ 276 (989)
.+|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 62 EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 9999989999999999999999999988888887777666666 999999999986
No 94
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.68 E-value=6.3e-17 Score=144.57 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=72.4
Q ss_pred eeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhc-cchhHHHhhcCCccEEEeeeccceeec
Q 001965 845 EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIES-FGFETDLRYHTQGQAFSLSVFDHWAIV 923 (989)
Q Consensus 845 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~es-fgf~~dLRs~T~G~a~~~~~F~hw~~v 923 (989)
|||+.|+|.||++++|.|+++|++|||+|++.+...+ ...+|+|.+|++++ +||.++||+.|+|+|+|.+.|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999998876542 36899999999999 599999999999999999999999864
No 95
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.63 E-value=1.3e-14 Score=181.44 Aligned_cols=105 Identities=28% Similarity=0.316 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCC-------------CceEEEEeeCC
Q 001965 153 KTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNS-------------KSYLCNIMDSP 219 (989)
Q Consensus 153 KTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~-------------~~~~inlIDTP 219 (989)
||||+|+|...+- .....+|||.+.+...+.+...+. +...++|||||
T Consensus 474 KTtLLD~iR~t~v-------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTP 534 (1049)
T PRK14845 474 NTTLLDKIRKTRV-------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTP 534 (1049)
T ss_pred cccHHHHHhCCCc-------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECC
Confidence 9999999943211 123457899888887777643211 11238999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
||.+|...+.++++.+|++++|||+.+|++.||.++++.+...++|+++|+||+|+.
T Consensus 535 Ghe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 535 GHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred CcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 999999988899999999999999999999999999999999999999999999986
No 96
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.60 E-value=3.5e-15 Score=134.95 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEE
Q 001965 487 SGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWV 566 (989)
Q Consensus 487 ~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv 566 (989)
++||+++|||+.++++.+ +++|+|||||+|++||.|++.. + ..++|++||.++|..+.++++|+|||||
T Consensus 1 ~~p~~~~Vfkv~~d~~~G-~la~~RV~sG~l~~g~~v~~~~-~---------~~~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 1 ESELSGTVFKIERDDKGE-RLAYLRLYSGTLRLRDSVRVNR-E---------EKIKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCCcEEEEEEeEECCCCC-eEEEEEEccCEEcCCCEEEeCC-C---------cEEEeceeEEEeCCCeEECcEECCCCEE
Confidence 369999999999999874 5999999999999999998764 1 3578999999999999999999999999
Q ss_pred EEeeccceeeccceee
Q 001965 567 LIEGVDASIMKSATLC 582 (989)
Q Consensus 567 ~I~Gld~~~~k~~Tl~ 582 (989)
+|.|++++.+ ++||+
T Consensus 70 ai~gl~~~~~-Gdtl~ 84 (85)
T cd03690 70 ILTGLKGLRV-GDVLG 84 (85)
T ss_pred EEECCCCCcC-ccccC
Confidence 9999998877 68875
No 97
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=4.9e-15 Score=171.23 Aligned_cols=144 Identities=22% Similarity=0.313 Sum_probs=105.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC-----------C--C
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS-----------N--S 208 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-----------~--~ 208 (989)
-|||+||+|+|||-|++.|...+ +.. ....|||-......|...+. + .
T Consensus 477 IcCilGHVDTGKTKlld~ir~tN-Vqe------------------geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTN-VQE------------------GEAGGITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred eEEEeecccccchHHHHHhhccc-ccc------------------ccccceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 59999999999999999995432 111 11234444444433332210 0 1
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHH
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAY 288 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~ 288 (989)
+---+.+||||||..|.....++...||.||||||.++|+.+||.+.+++++..+.|+||++||+||+.-.-..|....+
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHH
Confidence 22347899999999999999999999999999999999999999999999999999999999999999655555555555
Q ss_pred HHH----HHHHHHHHHHhhh
Q 001965 289 HKL----RHTIEVINNHISA 304 (989)
Q Consensus 289 ~~l----~~ii~~in~~l~~ 304 (989)
..| ..++++.+..+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ 637 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNN 637 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 433 3355555555543
No 98
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=1e-14 Score=164.79 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=118.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
...|||+|++|+|||||+|+|+.+.+.+. +..+| +|..+-...+.+ ++..+.||||+
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv---~~~aG---------------TTRD~I~~~~e~-----~~~~~~liDTA 234 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIV---SDIAG---------------TTRDSIDIEFER-----DGRKYVLIDTA 234 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEe---cCCCC---------------ccccceeeeEEE-----CCeEEEEEECC
Confidence 45699999999999999999999988887 44444 444555555655 67889999999
Q ss_pred Cccc----------ch-HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHH
Q 001965 220 GHVN----------FS-DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAY 288 (989)
Q Consensus 220 Gh~d----------f~-~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~ 288 (989)
|... |+ ..+..|+..||.++||+||.+|+..|..+++.++.+.+.++++|+||+|.+..+ .
T Consensus 235 GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~--------~ 306 (444)
T COG1160 235 GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED--------E 306 (444)
T ss_pred CCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch--------h
Confidence 9743 22 346789999999999999999999999999999999999999999999998421 1
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 289 HKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 289 ~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
..+.+..++++..+... .+.| ++|.||++|++
T Consensus 307 ~~~~~~k~~i~~~l~~l--------~~a~----i~~iSA~~~~~ 338 (444)
T COG1160 307 ATMEEFKKKLRRKLPFL--------DFAP----IVFISALTGQG 338 (444)
T ss_pred hHHHHHHHHHHHHhccc--------cCCe----EEEEEecCCCC
Confidence 22455666777766542 2344 68999998875
No 99
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.59 E-value=2.2e-14 Score=145.34 Aligned_cols=115 Identities=30% Similarity=0.436 Sum_probs=88.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+|+|+.|+|||||+++|........ ..+++|.......+.+. .+.++.++++|||||
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-------------------~~~~~t~~~~~~~~~~~--~~~~~~~~iiDtpG~ 60 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-------------------EAGGITQHIGAFEVPAE--VLKIPGITFIDTPGH 60 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc-------------------cCCCeEEeeccEEEecc--cCCcceEEEEeCCCc
Confidence 599999999999999999964321100 11233333222222221 013678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
..|......+++.+|++++|+|+.++...++...++.+...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 61 EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 99988888899999999999999999888888888888889999999999999863
No 100
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.58 E-value=7.3e-15 Score=132.34 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=74.3
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 490 LMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 490 l~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
|+++|||++++++. ++++|+|||||+|++||.|++...+ ..++|++||.++|+++.++++|+|||||+|.
T Consensus 1 ~~a~VfK~~~d~~~-g~i~~~Ri~sGtl~~g~~v~~~~~~---------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQR-GPLTFVRVYSGTLKRGSALYNTNTG---------KKERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCC-CeEEEEEEecCEECCCCEEEECCCC---------CEEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 57999999999986 5699999999999999999987643 3578999999999999999999999999999
Q ss_pred eccceeeccceeec
Q 001965 570 GVDASIMKSATLCN 583 (989)
Q Consensus 570 Gld~~~~k~~Tl~~ 583 (989)
|+++..+ ++||+.
T Consensus 71 gl~~~~~-Gdtl~~ 83 (83)
T cd04092 71 GLKQTRT-GDTLVT 83 (83)
T ss_pred CCCCccc-CCEEeC
Confidence 9988777 789873
No 101
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1.5e-14 Score=170.07 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=108.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+|+|++|+|||||+++|+...+.+. . ..+|+|..+....+.+ ++..++++||
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~---~---------------~~~gtt~~~~~~~~~~-----~~~~~~lvDT 228 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIV---S---------------DIAGTTRDSIDTPFER-----DGQKYTLIDT 228 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceee---c---------------CCCCceEEEEEEEEEE-----CCeeEEEEEC
Confidence 356799999999999999999986654332 1 1234555544444444 4567899999
Q ss_pred CCcccch-----------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHH
Q 001965 219 PGHVNFS-----------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDA 287 (989)
Q Consensus 219 PGh~df~-----------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~ 287 (989)
||+.+.. ..+.++++.+|++|+|+|+.+|.+.++..+++++...++|+++|+||+|+... +
T Consensus 229 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~-------~- 300 (435)
T PRK00093 229 AGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE-------K- 300 (435)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH-------H-
Confidence 9975421 23456889999999999999999999999999999999999999999998721 1
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeecccccccee
Q 001965 288 YHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSF 333 (989)
Q Consensus 288 ~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~f 333 (989)
.++.+.++++..+... .+. .++|.||+.||++
T Consensus 301 --~~~~~~~~~~~~l~~~--------~~~----~i~~~SA~~~~gv 332 (435)
T PRK00093 301 --TMEEFKKELRRRLPFL--------DYA----PIVFISALTGQGV 332 (435)
T ss_pred --HHHHHHHHHHHhcccc--------cCC----CEEEEeCCCCCCH
Confidence 1334555555444321 112 3789999999863
No 102
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.57 E-value=1.4e-14 Score=133.38 Aligned_cols=87 Identities=48% Similarity=0.791 Sum_probs=76.2
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 490 LMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 490 l~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
++++|||+.++++..++++|+|||||+|++||.|++.+++++.++++....++|++||+++|+++.++++|+|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 47899999999955678999999999999999999998777654445556789999999999999999999999999999
Q ss_pred eccceee
Q 001965 570 GVDASIM 576 (989)
Q Consensus 570 Gld~~~~ 576 (989)
|+++..+
T Consensus 81 g~~~~~~ 87 (93)
T cd03700 81 GLDQLKS 87 (93)
T ss_pred CCccCce
Confidence 9987543
No 103
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.56 E-value=2.2e-14 Score=168.48 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=106.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|++|+|||||+++|+.....+. .. ..|+|..+....+.+ ++..+.|+||
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~---~~---------------~~gtt~~~~~~~~~~-----~~~~~~liDT 227 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV---SD---------------IAGTTRDSIDIPFER-----NGKKYLLIDT 227 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeec---CC---------------CCCceECcEeEEEEE-----CCcEEEEEEC
Confidence 345799999999999999999986544332 11 123444433333433 3457999999
Q ss_pred CCcccchH-----------HHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHH
Q 001965 219 PGHVNFSD-----------EMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDA 287 (989)
Q Consensus 219 PGh~df~~-----------ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~ 287 (989)
||+.++.. .+..+++.||++|+|+|+.+|.+.++..+++++...++|+++|+||+|+.. ..+.
T Consensus 228 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~------~~~~ 301 (429)
T TIGR03594 228 AGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK------DEKT 301 (429)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC------CHHH
Confidence 99865431 235688999999999999999999999999999999999999999999971 1111
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeecccccccee
Q 001965 288 YHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSF 333 (989)
Q Consensus 288 ~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~f 333 (989)
+..+.++++..+... .+. .+++.||+.|+++
T Consensus 302 ---~~~~~~~~~~~~~~~--------~~~----~vi~~SA~~g~~v 332 (429)
T TIGR03594 302 ---REEFKKELRRKLPFL--------DFA----PIVFISALTGQGV 332 (429)
T ss_pred ---HHHHHHHHHHhcccC--------CCC----ceEEEeCCCCCCH
Confidence 233445555444321 011 3789999999863
No 104
>COG1159 Era GTPase [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=153.18 Aligned_cols=113 Identities=26% Similarity=0.396 Sum_probs=91.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
-|||+|.+|+|||||+|+|+.+.-++. +..+.++|- +-+||... +++++.|+||||.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIv---S~k~QTTR~-------~I~GI~t~-------------~~~QiIfvDTPGi 64 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIV---SPKPQTTRN-------RIRGIVTT-------------DNAQIIFVDTPGI 64 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEee---cCCcchhhh-------heeEEEEc-------------CCceEEEEeCCCC
Confidence 489999999999999999998777665 444443331 22444321 5788999999996
Q ss_pred cc--------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VN--------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~d--------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.. ....+..++..+|.+++|||+.++.....+.++..+...+.|+++++||+|+..
T Consensus 65 h~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 65 HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred CCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 42 345677889999999999999999999999999999887889999999999984
No 105
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.55 E-value=2.2e-14 Score=137.60 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=85.1
Q ss_pred EEeeeecccccee--eeec--CCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCC
Q 001965 678 FCETVVESSSMKC--FAET--PNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGP 753 (989)
Q Consensus 678 yrETI~~~s~~~~--~a~t--~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP 753 (989)
|||||.+++.... ..++ ..++++|+++++|++++.
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~----------------------------------------- 39 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGS----------------------------------------- 39 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCC-----------------------------------------
Confidence 8999988754211 1111 224589999999987531
Q ss_pred CCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHH
Q 001965 754 DKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAY 833 (989)
Q Consensus 754 ~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~ 833 (989)
+|+|++.+.+..+|+ +++++|.+||+||+++|||||+||+||+|+|.++.++.. ....+++++++|+||+
T Consensus 40 ----~~~~~~~~~~~~~~~----~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~ 109 (116)
T cd01680 40 ----GVRVVDPVDEELLPA----ELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFE 109 (116)
T ss_pred ----CcEEEEecCCCcCCH----HHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 356666655555554 455678899999999999999999999999999998754 3356889999999999
Q ss_pred HHHhhcC
Q 001965 834 SAFLMAT 840 (989)
Q Consensus 834 ~a~~~A~ 840 (989)
+||++|.
T Consensus 110 ~al~~a~ 116 (116)
T cd01680 110 SAAQKAG 116 (116)
T ss_pred HHHHhcC
Confidence 9998874
No 106
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.54 E-value=3.2e-14 Score=128.16 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=73.7
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 490 LMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 490 l~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
++|+|||+.++++.+ .++|+|||||+|++||.|++.+.+ ..++|++|+.++|.++.++++++|||||+|.
T Consensus 1 ~~a~Vfk~~~d~~~G-~~~~~Rv~sG~l~~g~~v~~~~~~---------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVG-KLSFVRVYSGTLKAGSTLYNSTKG---------KKERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCc-eEEEEEEecCEEcCCCEEEECCCC---------cEEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 579999999999875 499999999999999999988643 4578999999999999999999999999999
Q ss_pred eccceeeccceee
Q 001965 570 GVDASIMKSATLC 582 (989)
Q Consensus 570 Gld~~~~k~~Tl~ 582 (989)
|+++..+ ++||+
T Consensus 71 g~~~~~~-Gdtl~ 82 (83)
T cd04088 71 GLKDTAT-GDTLC 82 (83)
T ss_pred CCCCCcc-CCEee
Confidence 9998766 78886
No 107
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=4.9e-13 Score=135.27 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=82.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|++|+|||||+++|+....... .. .++.+.......+.. .+..+++||||
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~---~~---------------~~~~~~~~~~~~~~~-----~~~~~~iiDtp 58 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV---SD---------------IAGTTRDSIDVPFEY-----DGKKYTLIDTA 58 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec---cC---------------CCCCccCceeeEEEE-----CCeeEEEEECC
Confidence 45799999999999999999975443221 10 011222221122222 34568999999
Q ss_pred Ccccch-----------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 220 GHVNFS-----------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~-----------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|+.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+..
T Consensus 59 G~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 59 GIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred CCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 986542 1234567899999999999999888888888888888999999999999874
No 108
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=155.00 Aligned_cols=114 Identities=21% Similarity=0.299 Sum_probs=93.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+.|||+|++|+|||||.|+|+.+.-++. +..+| +|-+.......| .++.|.+|||+|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV---~D~pG---------------vTRDr~y~~~~~-----~~~~f~lIDTgG 60 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV---SDTPG---------------VTRDRIYGDAEW-----LGREFILIDTGG 60 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe---ecCCC---------------CccCCccceeEE-----cCceEEEEECCC
Confidence 5699999999999999999988776665 33334 333334444555 566799999999
Q ss_pred cccch---------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFS---------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~---------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
..+.. ..+..|+..||++|+|||+.+|+++..+.+.+.++..++|+|+|+||+|-..
T Consensus 61 l~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 61 LDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred CCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch
Confidence 98533 2366899999999999999999999999999999988899999999999873
No 109
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.47 E-value=2.1e-13 Score=123.28 Aligned_cols=81 Identities=23% Similarity=0.228 Sum_probs=72.0
Q ss_pred EEEEeeec---cCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE
Q 001965 492 VNVTKLYP---KSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI 568 (989)
Q Consensus 492 ~~V~K~~~---~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I 568 (989)
++|||+.+ +++.+ .++|+|||||+|++||.|++...+ ..++|++|+.++|.++.++++|.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~G-kla~~Rv~sG~l~~g~~v~~~~~~---------~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRD-RIAFVRVCSGKFERGMKVKHVRLG---------KEVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCc-EEEEEEEECCEEcCCCEEEEcCCC---------CEEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 57999999 89875 599999999999999999986533 257899999999999999999999999999
Q ss_pred eeccceeeccceeec
Q 001965 569 EGVDASIMKSATLCN 583 (989)
Q Consensus 569 ~Gld~~~~k~~Tl~~ 583 (989)
.|++++.+ ++||++
T Consensus 71 ~gl~~~~~-Gdtl~~ 84 (85)
T cd03689 71 VNPGNFQI-GDTLTE 84 (85)
T ss_pred ECCCCccc-cCEeeC
Confidence 99998877 799974
No 110
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.47 E-value=2.6e-13 Score=121.70 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=71.1
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 490 LMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 490 l~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
|+++|||+.+++. +.++|+|||||+|++||.|++...+ +.++|.+|+.++|.++.+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~--G~i~~~Rv~sG~lk~gd~v~~~~~~---------~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF--GQLTYMRIYQGKLKKGDTIYNVRTG---------KKVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC--CCEEEEEEecCEEcCCCEEEEcCCC---------CEEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999986 4599999999999999999987643 3578999999999999999999999999999
Q ss_pred eccceeeccceee
Q 001965 570 GVDASIMKSATLC 582 (989)
Q Consensus 570 Gld~~~~k~~Tl~ 582 (989)
|++ ..+ ++||+
T Consensus 70 g~~-~~~-Gdtl~ 80 (81)
T cd04091 70 GID-CAS-GDTFT 80 (81)
T ss_pred CCC-ccc-CCEec
Confidence 997 555 78886
No 111
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.47 E-value=2.8e-13 Score=137.28 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=77.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+++|+.|+|||||+++|........ +. . ..+.. .|+......+.+ .+..++++|||||
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~--~~--~---------~~~~~--~t~~~~~~~~~~-----~~~~~~l~Dt~G~ 60 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK--GL--P---------PSKIT--PTVGLNIGTIEV-----GNARLKFWDLGGQ 60 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccccc--CC--c---------ccccC--CccccceEEEEE-----CCEEEEEEECCCC
Confidence 699999999999999999975432100 00 0 00011 122222222333 4578999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++|+|+|+.+.-. ......+..+. ..++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 61 ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 9999999999999999999999986432 11222233222 34789999999999863
No 112
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.46 E-value=3.2e-13 Score=122.49 Aligned_cols=85 Identities=27% Similarity=0.471 Sum_probs=73.9
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 490 LMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 490 l~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
|.++|||+..+++.+ +++|+|||||+|++||+|++...+ ++....+|++|+.++|++..++++++||||+++.
T Consensus 1 ~~~~vfk~~~d~~~g-~i~~~Rv~sG~l~~g~~v~~~~~~------~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVG-RIAIGRIFRGTVKVGQQVAVVKRD------GKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCC-eEEEEEEEeCEEcCCCEEEEEcCC------CCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 468999999999864 599999999999999999987653 1234578999999999999999999999999999
Q ss_pred eccceeeccceee
Q 001965 570 GVDASIMKSATLC 582 (989)
Q Consensus 570 Gld~~~~k~~Tl~ 582 (989)
|++++.+ ++||+
T Consensus 74 gl~~~~~-Gdtl~ 85 (86)
T cd03691 74 GIEDITI-GDTIC 85 (86)
T ss_pred CCCCCcc-cceec
Confidence 9988777 68885
No 113
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.45 E-value=3.2e-13 Score=129.26 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=81.3
Q ss_pred EEEEeeeeccccceeeeecCCC--ceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCC
Q 001965 676 VSFCETVVESSSMKCFAETPNK--KNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGP 753 (989)
Q Consensus 676 V~yrETI~~~s~~~~~a~t~nk--~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP 753 (989)
|+|||||+++....++.++..+ .++|+++++|++++.
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g~----------------------------------------- 39 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRGS----------------------------------------- 39 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCCC-----------------------------------------
Confidence 6899999988664444444444 689999999987542
Q ss_pred CCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHH
Q 001965 754 DKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAY 833 (989)
Q Consensus 754 ~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~ 833 (989)
.+.|.+.+.++.+|+.|+++ |.+||+.|+++||| |+||.||+|+|.++.++..... ...+..|+++|++
T Consensus 40 ----g~~f~~~~~~~~ip~~~~~a----ie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ss--~~af~~Aa~~a~~ 108 (115)
T cd01684 40 ----GLQYESEVSLGSLPRSFQNA----VEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPVST--AADFRELTPRVLR 108 (115)
T ss_pred ----CcEEEEEecCCcCCHHHHHH----HHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCCCC--HHHHHHHHHHHHH
Confidence 12344444455678888765 55999999999999 9999999999999988532211 1123347888888
Q ss_pred HHHhhcC
Q 001965 834 SAFLMAT 840 (989)
Q Consensus 834 ~a~~~A~ 840 (989)
+||.+|.
T Consensus 109 ~a~~~a~ 115 (115)
T cd01684 109 QALKKAG 115 (115)
T ss_pred HHHHhcC
Confidence 8888764
No 114
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.45 E-value=3.7e-13 Score=134.24 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=82.1
Q ss_pred EEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCccc
Q 001965 144 ALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVN 223 (989)
Q Consensus 144 ~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~d 223 (989)
+++|+.|+|||||+++|+....... ... .++|.........+ .++.++++||||+.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~---~~~---------------~~~t~~~~~~~~~~-----~~~~~~i~DtpG~~~ 57 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV---EDT---------------PGVTRDRIYGEAEW-----GGREFILIDTGGIEP 57 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee---cCC---------------CCceeCceeEEEEE-----CCeEEEEEECCCCCC
Confidence 5899999999999999975422111 000 11122111222222 457799999999998
Q ss_pred chH--------HHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 224 FSD--------EMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 224 f~~--------ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+.. +....++.+|++++|+|+..+.+.....+++++...++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 58 DDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 654 556788999999999999998888888888888888999999999999974
No 115
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.44 E-value=1.2e-12 Score=144.41 Aligned_cols=111 Identities=22% Similarity=0.274 Sum_probs=78.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|++|+|||||+++|+.....+. +...++++ + ..+|+.. ..+..+.|+||||+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v---s~~~~TTr--~-----~i~~i~~-------------~~~~qii~vDTPG~ 58 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT---SPKAQTTR--N-----RISGIHT-------------TGASQIIFIDTPGF 58 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec---CCCCCccc--C-----cEEEEEE-------------cCCcEEEEEECcCC
Confidence 389999999999999999986543222 11222122 1 1122211 13456999999998
Q ss_pred ccc--------hHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 222 VNF--------SDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df--------~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.+. ...+..+++.+|++++|+|+..+.... +.++..+...+.|+++|+||+|+.
T Consensus 59 ~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 59 HEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred CCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 642 223557789999999999999876554 566777777889999999999986
No 116
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=7.2e-13 Score=157.23 Aligned_cols=116 Identities=23% Similarity=0.333 Sum_probs=85.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
..++|+|+|++|+|||||+++|+.....+. +...+ +|.......+.+ ++..+.|+||
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~---s~~~g---------------tT~d~~~~~~~~-----~~~~~~l~DT 266 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV---DDVAG---------------TTVDPVDSLIEL-----GGKTWRFVDT 266 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc---cCCCC---------------ccCCcceEEEEE-----CCEEEEEEEC
Confidence 467899999999999999999986543222 11122 222222222333 4556889999
Q ss_pred CCcc---------cchHHH--HHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 219 PGHV---------NFSDEM--TAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~---------df~~ev--~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||.. +|...+ ..+++.||++|+|+|+.++.+.+...++..+...++|+|+|+||+|+..
T Consensus 267 aG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 267 AGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred CCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9963 222222 3467899999999999999999999999988889999999999999963
No 117
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.43 E-value=2.1e-12 Score=138.46 Aligned_cols=168 Identities=19% Similarity=0.275 Sum_probs=116.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeee-EEEEeeeeEEEeecCCCCceEEEEee
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERR-ISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rg-iti~~~~~~~~~~~~~~~~~~inlID 217 (989)
..+.|+|+|++|+|||||+++|+....... .. ...| +++ . . .++..++++|
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-----------~~------~~~g~i~i-------~-~---~~~~~i~~vD 89 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-----------IS------DIKGPITV-------V-T---GKKRRLTFIE 89 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCc-----------cc------cccccEEE-------E-e---cCCceEEEEe
Confidence 456799999999999999999975422100 00 0112 222 1 1 1456799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEE-EEEcccccccccCCCchHHHHHHHHHHH
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVV-VVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~il-viNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||+. ..+..+++.+|++++|+|+.+|...++..++..+...++|.++ |+||+|+... ..++..+.+
T Consensus 90 tPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~---------~~~~~~~~~ 157 (225)
T cd01882 90 CPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKK---------NKTLRKTKK 157 (225)
T ss_pred CCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCc---------HHHHHHHHH
Confidence 99975 6777888999999999999999999999999999888999654 9999998631 112345667
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcc
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWG 361 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwg 361 (989)
+++..+.... .| ...|.|.||+.+-.++..+... +.+. ++....+..-|.
T Consensus 158 ~l~~~~~~~~---------~~-~~ki~~iSa~~~~~~~~~e~~~----~~r~-i~~~~~~~~~~r 207 (225)
T cd01882 158 RLKHRFWTEV---------YQ-GAKLFYLSGIVHGRYPKTEIHN----LARF-ISVMKFRPLNWR 207 (225)
T ss_pred HHHHHHHHhh---------CC-CCcEEEEeeccCCCCCHHHHHH----HHHH-HHhCCCCCCeee
Confidence 7776554211 12 2357889999988887776543 3333 666666666663
No 118
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.42 E-value=3.2e-12 Score=131.92 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=99.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+.+..+|+|+|+.|+|||||+++|+..... . . +.++ .|.|..... +.+ + ..+.++
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~---~-------~~~~------~~~t~~~~~--~~~---~---~~~~li 69 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKL-A---R-------TSKT------PGRTQLINF--FEV---N---DGFRLV 69 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c---c-------ccCC------CCcceEEEE--EEe---C---CcEEEE
Confidence 356778999999999999999999754311 1 0 0010 111221111 111 1 248999
Q ss_pred eCCCcc----------cchHHHHHHhh---hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCC
Q 001965 217 DSPGHV----------NFSDEMTAALR---LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLP 283 (989)
Q Consensus 217 DTPGh~----------df~~ev~~alr---~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~ 283 (989)
||||+. +|...+...++ .+|++++|+|+..+....+..+++.+...++|+++++||+|+...
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----- 144 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK----- 144 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH-----
Confidence 999963 34444444444 468999999999999999988889888889999999999998631
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 284 PKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 284 p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
.+ ....++++++.+.... ..-++...||+.|++
T Consensus 145 -~~----~~~~~~~i~~~l~~~~-----------~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 145 -SE----LNKQLKKIKKALKKDA-----------DDPSVQLFSSLKKTG 177 (179)
T ss_pred -HH----HHHHHHHHHHHHhhcc-----------CCCceEEEECCCCCC
Confidence 12 2345666666665421 011477889998875
No 119
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.40 E-value=5.4e-13 Score=151.39 Aligned_cols=159 Identities=20% Similarity=0.247 Sum_probs=108.6
Q ss_pred cceeeeccCCCCCCCcCcccccccceeEeecccccccccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcc
Q 001965 88 DVETLVMDEDEQPLEQPIIKPVKNIKFEVGVKDSSTYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHM 167 (989)
Q Consensus 88 ~~e~~~~eed~q~l~~pii~p~~~~~~~~~e~~l~~~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i 167 (989)
+|+++|+|||...++...+...-+...+..++-+...-..+-|++-+ +|+|+|.+|+|||||+|+|+....+|
T Consensus 172 Ea~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~-------kvvIiG~PNvGKSSLLNaL~~~d~AI 244 (454)
T COG0486 172 EANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGL-------KVVIIGRPNVGKSSLLNALLGRDRAI 244 (454)
T ss_pred eEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc-------eEEEECCCCCcHHHHHHHHhcCCceE
Confidence 57788888866544443333221111111111112222222233333 49999999999999999999999998
Q ss_pred cccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccchHHHH--------HHhhhcCeEE
Q 001965 168 STFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMT--------AALRLADGAV 239 (989)
Q Consensus 168 ~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ev~--------~alr~aD~ai 239 (989)
. +..+|++| |.. + ..+.+ +++.+.|+||+|..+-.+.++ .++..||.++
T Consensus 245 V---TdI~GTTR--Dvi----e---------e~i~i-----~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL 301 (454)
T COG0486 245 V---TDIAGTTR--DVI----E---------EDINL-----NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVL 301 (454)
T ss_pred e---cCCCCCcc--ceE----E---------EEEEE-----CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEE
Confidence 8 56677665 322 1 12222 778999999999987665544 5788999999
Q ss_pred EEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 240 LIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 240 lVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+|+|++++...+...++. +...+.|+++|+||.|+..
T Consensus 302 ~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 302 FVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred EEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccc
Confidence 999999987777777766 5667789999999999985
No 120
>PRK15494 era GTPase Era; Provisional
Probab=99.40 E-value=2.7e-12 Score=145.84 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=80.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|++|+|||||+++|+.....+. +...++++ + ...+ .+.+ +++.++|+||
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~iv---s~k~~tTr--~-----~~~~--------~~~~-----~~~qi~~~DT 107 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIV---TPKVQTTR--S-----IITG--------IITL-----KDTQVILYDT 107 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeec---cCCCCCcc--C-----cEEE--------EEEe-----CCeEEEEEEC
Confidence 345799999999999999999985433221 11111111 0 0011 1122 4567999999
Q ss_pred CCcccc--------hHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 219 PGHVNF--------SDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df--------~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
||..+. ......+++.||++|+|||+..+....+..++..+...+.|+++|+||+|+.
T Consensus 108 pG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 108 PGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred CCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 998542 2223356889999999999999887777778887777788999999999985
No 121
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=1.7e-12 Score=131.64 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=80.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
..++|+++|+.|+|||||+++|+... .. . ... ...+. ......+.+ ++....++|+||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~~---~-~~~-----------~t~~~--~~~~~~~~~---~~~~~~l~i~D~ 59 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--FS---E-RQG-----------NTIGV--DFTMKTLEI---EGKRVKLQIWDT 59 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--Cc---c-cCC-----------Cccce--EEEEEEEEE---CCEEEEEEEEEC
Confidence 35789999999999999999996421 11 0 000 01111 112222333 224467899999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH---HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~---~~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+..
T Consensus 60 ~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 60 AGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred CChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99999999899999999999999999987654443333 2222 24679999999999864
No 122
>PRK00089 era GTPase Era; Reviewed
Probab=99.39 E-value=4.2e-12 Score=141.56 Aligned_cols=114 Identities=24% Similarity=0.339 Sum_probs=81.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
...|+|+|++|+|||||+++|+.....+. +....+++ ...+++.. ..+..+.|+|||
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~v---s~~~~tt~-------~~i~~i~~-------------~~~~qi~~iDTP 61 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIV---SPKPQTTR-------HRIRGIVT-------------EDDAQIIFVDTP 61 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeec---CCCCCccc-------ccEEEEEE-------------cCCceEEEEECC
Confidence 45699999999999999999986543222 11111111 01111111 134679999999
Q ss_pred Ccccc--------hHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 220 GHVNF--------SDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df--------~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|+.+. ...+..++..+|++++|+|+..+.......+++.+...++|+++|+||+|+.
T Consensus 62 G~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 62 GIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 98653 3445668889999999999999877777788888777789999999999997
No 123
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=3.6e-12 Score=158.27 Aligned_cols=117 Identities=24% Similarity=0.386 Sum_probs=89.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+..+++|+|+|++|+|||||+++|+.....+. .. ..|+|.........| .+..+++|
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv---~~---------------~pGvT~d~~~~~~~~-----~~~~~~li 328 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVV---ED---------------TPGVTRDRVSYDAEW-----AGTDFKLV 328 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceee---cC---------------CCCeeEEEEEEEEEE-----CCEEEEEE
Confidence 44568999999999999999999975432222 11 123343333333334 45679999
Q ss_pred eCCCccc--------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 217 DSPGHVN--------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 217 DTPGh~d--------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
||||+.. |...+..+++.||++|+|||+.+|+......+++.+...++|+++|+||+|+.
T Consensus 329 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 329 DTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred eCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9999763 45566778999999999999999999888888899989999999999999985
No 124
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=1.9e-12 Score=160.74 Aligned_cols=116 Identities=20% Similarity=0.284 Sum_probs=86.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
...++|+|+|++|+|||||+++|+.....+. +...+ +|.......+.+ ++..++|+|
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v---~~~~g---------------tT~d~~~~~~~~-----~~~~~~liD 504 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVV---NDLAG---------------TTRDPVDEIVEI-----DGEDWLFID 504 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc---CCCCC---------------CCcCcceeEEEE-----CCCEEEEEE
Confidence 3468999999999999999999986654332 11122 222222222333 445688999
Q ss_pred CCCcc---------cchHH--HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 218 SPGHV---------NFSDE--MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~---------df~~e--v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|||+. +|... ...+++.||++|+|+|+.++++.++..+++.+...++|+++|+||+|+.
T Consensus 505 TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 505 TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 99964 22222 2456789999999999999999999999998888999999999999986
No 125
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=3.2e-12 Score=151.76 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=87.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
..+++|+|+|++|+|||||+++|+.....+. .. ..|+|.......+.+ .++.++|+|
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v---~~---------------~~gvT~d~~~~~~~~-----~~~~~~l~D 92 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVV---ED---------------VPGVTRDRVSYDAEW-----NGRRFTVVD 92 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccc---cC---------------CCCCCEeeEEEEEEE-----CCcEEEEEe
Confidence 3457899999999999999999975432221 11 112332222222333 456799999
Q ss_pred CCCccc--------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVN--------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~d--------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|||+.. |...+..+++.||++|+|+|+..+.+.....+++.+...++|+++|+||+|+..
T Consensus 93 T~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 93 TGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred CCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 999863 444566789999999999999999888788888888888999999999999863
No 126
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=7.6e-12 Score=125.47 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=94.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-.|+|+|..++||||++.++......+... ... .+.... .|..|+....-++.+ +.++.+.|+||||
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~-~~~------~~s~k~--kr~tTva~D~g~~~~----~~~~~v~LfgtPG 77 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEA-DAS------SVSGKG--KRPTTVAMDFGSIEL----DEDTGVHLFGTPG 77 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeec-ccc------cccccc--ccceeEeecccceEE----cCcceEEEecCCC
Confidence 369999999999999999998765433210 000 011011 334555444444443 1347899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcC-CCEEEEEEccccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQER-LPIVVVVNKVDRLIT 278 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~-ip~ilviNKiD~~~~ 278 (989)
|.+|.-.+.-.++.++|+|++||++.+.....+++++.....+ +|++|++||.|+...
T Consensus 78 q~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 78 QERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA 136 (187)
T ss_pred cHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC
Confidence 9999999999999999999999999988777788888887777 999999999999864
No 127
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=2.1e-12 Score=151.76 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=86.5
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+|+|++|+|||||+++|+.....+. ... .|+|.......+.| .+..++||||||+.
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v---~~~---------------~g~t~d~~~~~~~~-----~~~~~~liDTpG~~ 58 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIV---SDT---------------PGVTRDRKYGDAEW-----GGREFILIDTGGIE 58 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccee---cCC---------------CCcccCceEEEEEE-----CCeEEEEEECCCCC
Confidence 89999999999999999975443222 111 12232222233344 45679999999984
Q ss_pred c--------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 223 N--------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 d--------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
. +...+..+++.+|++++|+|+..|.......+++.+.+.++|+++|+||+|...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 59 EDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred CcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 3 445577889999999999999999999999999999989999999999999874
No 128
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.35 E-value=3.2e-12 Score=122.73 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=81.5
Q ss_pred EEeeeeccccc--eeeeecCC--CceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCC
Q 001965 678 FCETVVESSSM--KCFAETPN--KKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGP 753 (989)
Q Consensus 678 yrETI~~~s~~--~~~a~t~n--k~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP 753 (989)
|||||++++.. .+..++.. ..++|+++++|++++.
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~----------------------------------------- 39 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGS----------------------------------------- 39 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCC-----------------------------------------
Confidence 89999887542 22222222 3489999999987542
Q ss_pred CCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHH
Q 001965 754 DKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAY 833 (989)
Q Consensus 754 ~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~ 833 (989)
.|.+.+++.+..+|+.+ .++|.+||++|+++|||+|+||+||+|+|.++.++.... ...++.+++++|++
T Consensus 40 ----g~~~~~~~~~~~lp~~~----~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s--~~~~~~~aa~~a~~ 109 (116)
T cd01434 40 ----GFEFVNKIVGGAIPKEY----IPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDS--SEMAFKIAARMAFK 109 (116)
T ss_pred ----CCEEEEeccCCccCHHH----HHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCC--CHHHHHHHHHHHHH
Confidence 13455555555455544 457779999999999999999999999999998764222 24677889999999
Q ss_pred HHHhhcC
Q 001965 834 SAFLMAT 840 (989)
Q Consensus 834 ~a~~~A~ 840 (989)
+|+.+|+
T Consensus 110 ~al~~a~ 116 (116)
T cd01434 110 EAFKKAK 116 (116)
T ss_pred HHHHhcC
Confidence 9998874
No 129
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.35 E-value=3.3e-12 Score=127.80 Aligned_cols=107 Identities=23% Similarity=0.257 Sum_probs=74.3
Q ss_pred EEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccc
Q 001965 145 LVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNF 224 (989)
Q Consensus 145 IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df 224 (989)
++|+.|+|||||+++|........ ...++|+......+.+ .++.++++||||+.+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~-------------------~~~~~t~~~~~~~~~~-----~~~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG-------------------NWPGVTVEKKEGRFKL-----GGKEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc-------------------CCCCcccccceEEEee-----CCeEEEEEECCCcccc
Confidence 589999999999999964321110 0124444443344444 3467999999999887
Q ss_pred hHH------HHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 225 SDE------MTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 225 ~~e------v~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
... ....++ .+|++|+|+|+... .+....+.++...++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 57 SPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred CCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 642 334443 89999999999874 2334455666778899999999999964
No 130
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.34 E-value=5.1e-12 Score=114.65 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=68.2
Q ss_pred eEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 490 LMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 490 l~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
|.++|||+.++++.| .++|+|||||+|++||.|++...+ +.++|++|+++ +.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G-~i~~~Rv~sG~l~~~~~v~~~~~~---------~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRG-VIALVRVFDGTLKKGDKIRFMSTG---------KEYEVEEVGIF-RPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCC-EEEEEEEEcCEEcCCCEEEEecCC---------CeEEEEEEEEE-CCCccCCceECCCCEEEEE
Confidence 478999999999875 599999999999999999987543 25789999955 8888999999999999996
Q ss_pred -e---ccceeeccceee
Q 001965 570 -G---VDASIMKSATLC 582 (989)
Q Consensus 570 -G---ld~~~~k~~Tl~ 582 (989)
| +++..+ ++||+
T Consensus 70 ~g~~~l~~~~~-Gdtl~ 85 (86)
T cd03699 70 AGIKTVKDARV-GDTIT 85 (86)
T ss_pred ccccccCcccc-ccEee
Confidence 3 665666 78886
No 131
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.34 E-value=8.6e-12 Score=135.23 Aligned_cols=292 Identities=17% Similarity=0.314 Sum_probs=187.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEE-----------------ee
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV-----------------LE 204 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~-----------------~~ 204 (989)
.||++|.+++|||||+..| +|.--..|+..+++..|...++.|.-|.-++......|. |-
T Consensus 135 RVAVVGNVDAGKSTLLGVL---THgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVL---THGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred EEEEEecccCCcceeEeee---eecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 3999999999999999988 333333455555555566666666666655544333332 21
Q ss_pred c-CCCCceEEEEeeCCCcccchHHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccC
Q 001965 205 D-SNSKSYLCNIMDSPGHVNFSDEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELK 281 (989)
Q Consensus 205 ~-~~~~~~~inlIDTPGh~df~~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~ 281 (989)
. +......++|||.+||..+...+.-++. .-|...|+|-+..|+...|.+++.++....+|+.+|++|||..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC----- 286 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC----- 286 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC-----
Confidence 1 2223467999999999999998887775 5699999999999999999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcc
Q 001965 282 LPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWG 361 (989)
Q Consensus 282 l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwg 361 (989)
|++. |++.+.-+..++.+.. ....+.+.-....|+.+... |.
T Consensus 287 --PANi---LqEtmKll~rllkS~g--crK~PvlVrs~DDVv~~A~N----------------F~--------------- 328 (641)
T KOG0463|consen 287 --PANI---LQETMKLLTRLLKSPG--CRKLPVLVRSMDDVVHAAVN----------------FP--------------- 328 (641)
T ss_pred --cHHH---HHHHHHHHHHHhcCCC--cccCcEEEecccceEEeecc----------------Cc---------------
Confidence 3443 4556666666665421 12222222222222211000 00
Q ss_pred cccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhccccc
Q 001965 362 DMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFG 441 (989)
Q Consensus 362 d~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g 441 (989)
. ..+||.|--
T Consensus 329 -------------------------S---------------------------------------------er~CPIFQv 338 (641)
T KOG0463|consen 329 -------------------------S---------------------------------------------ERVCPIFQV 338 (641)
T ss_pred -------------------------c---------------------------------------------ccccceEEe
Confidence 0 012222221
Q ss_pred C-----hHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEece
Q 001965 442 S-----ASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGI 516 (989)
Q Consensus 442 ~-----~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGt 516 (989)
+ .-.||.|..+.+|.-. ..+.+.|.-.+|-.+|..+..|. ++-|..+||+
T Consensus 339 SNVtG~NL~LLkmFLNlls~R~------------------------~~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L~Gt 393 (641)
T KOG0463|consen 339 SNVTGTNLPLLKMFLNLLSLRR------------------------QLNENDPAEFQIDDIYWVPGVGT-VVSGTLLSGT 393 (641)
T ss_pred ccccCCChHHHHHHHhhcCccc------------------------ccccCCCcceeecceEecCCcce-Eeecceeeee
Confidence 1 1246666666555321 01334566777888899887755 8889999999
Q ss_pred ecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEE--Eeeccc-eeeccceeec
Q 001965 517 IQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVL--IEGVDA-SIMKSATLCN 583 (989)
Q Consensus 517 L~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~--I~Gld~-~~~k~~Tl~~ 583 (989)
++-+|.+. +|+. ...++....|+.|. |.+.+|..+.+|+-.. +.++.. .+-|+-.+++
T Consensus 394 IrLND~Ll-LGPd----~~G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVs 454 (641)
T KOG0463|consen 394 IRLNDILL-LGPD----SNGDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVS 454 (641)
T ss_pred EEeccEEE-ecCC----CCCCeeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEec
Confidence 99999775 4654 23455666676654 8888999999998653 444432 3444555555
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.33 E-value=3.7e-12 Score=125.82 Aligned_cols=114 Identities=21% Similarity=0.339 Sum_probs=73.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+... ... +..++++.......+.+ ++..+.+.++||||
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G 59 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT------------------EYKPGTTRNYVTTVIEE---DGKTYKFNLLDTAG 59 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC------------------cCCCCceeeeeEEEEEE---CCEEEEEEEEECCC
Confidence 479999999999999999997543 111 01122333322222222 12337799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCC-------CcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAE-------GVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~e-------gv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+.+|........+.++.++.++|... +...+...+++.+.. ++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 60 QEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred cccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 99996666655666666666555543 333444444444433 889999999999974
No 133
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=7.5e-12 Score=127.11 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=80.8
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
....++|+++|+.|+|||||+++|.... .. .+ ....+++......+.+ ++....+.++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~--~~------~~-----------~~~t~~~~~~~~~~~~---~~~~~~~~~~ 61 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGL--FP------PG-----------QGATIGVDFMIKTVEI---KGEKIKLQIW 61 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCC--CC------CC-----------CCCceeeEEEEEEEEE---CCEEEEEEEE
Confidence 3456899999999999999999996321 11 00 0011111122222333 2344668899
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH----HHHHHcCCCEEEEEEccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI----RHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l----~~~~~~~ip~ilviNKiD~~ 276 (989)
||||+..|.......++.+|++|+|+|+..+........| +.....++|+++|+||+|+.
T Consensus 62 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9999999999999999999999999999876543332233 23333478999999999985
No 134
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.33 E-value=5e-12 Score=127.00 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=76.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.|+|||||+++|+.... . .+..+ -+++. ..+.+ ....++++||||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~----------~~~~t------~~~~~----~~~~~-----~~~~~~i~D~~G~ 53 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V----------TTIPT------IGFNV----ETVEY-----KNVSFTVWDVGGQ 53 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C----------CCCCC------cCcce----EEEEE-----CCEEEEEEECCCC
Confidence 489999999999999999975431 1 00000 01111 12222 3567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHH----HHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
..|.......++.+|++++|+|+..+- .......+... ...+.|+++|+||+|+..
T Consensus 54 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 54 DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 999888888999999999999999762 12223333332 235789999999999974
No 135
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=6.4e-12 Score=147.93 Aligned_cols=113 Identities=21% Similarity=0.301 Sum_probs=84.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+|+|++|+|||||+++|+.....+. .... |+|.......+.+ .++.+++|||||
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v---~~~~---------------~~t~d~~~~~~~~-----~~~~~~liDT~G 58 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV---ADTP---------------GVTRDRIYGEAEW-----LGREFILIDTGG 58 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---CCCC---------------CCcccceEEEEEE-----CCcEEEEEECCC
Confidence 4699999999999999999975433222 1111 1222222222333 447799999999
Q ss_pred ccc----c----hHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HVN----F----SDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~d----f----~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+.+ + ...+..+++.+|++|+|||+.++.......+++++...++|+++|+||+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 59 IEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 988 3 3335678899999999999999998888888888888899999999999964
No 136
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.32 E-value=1.1e-11 Score=126.83 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=76.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
.-.+|+++|+.++|||||+++|.... .. .+.. ..|..+. .+.+ +.+.++++||
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~--~~----------~~~~------t~g~~~~----~~~~-----~~~~l~l~D~ 65 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED--ID----------TISP------TLGFQIK----TLEY-----EGYKLNIWDV 65 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--CC----------CcCC------ccccceE----EEEE-----CCEEEEEEEC
Confidence 34569999999999999999996431 11 0000 1111111 1222 3577999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHH----HHcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
||+..|.......++.+|++|+|+|+...-... ....+..+ ...++|+++|+||+|+..
T Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 66 GGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 999999888888999999999999998763211 11122222 235789999999999863
No 137
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.31 E-value=1.2e-11 Score=125.27 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=78.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.|+|||||+++|+....... + ....+.++.... ... +++...++++||||+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~-----------~------~~~~~~~~~~~~--~~~---~~~~~~~~i~Dt~G~ 59 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ-----------Q------LSTYALTLYKHN--AKF---EGKTILVDFWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-----------c------CCceeeEEEEEE--EEE---CCEEEEEEEEeCCCc
Confidence 599999999999999999974321000 0 001111221111 111 345678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHHc--CCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQE--RLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~~--~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+.++...+... .+..+.+. ++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 60 ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 999999999999999999999998876544433 33333333 68999999999974
No 138
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.30 E-value=1.4e-11 Score=124.24 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=76.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++++....... ... +. ... . . ..+.+ ++....++++||||+
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~~~~-----~~~------t~---~~~-~-~----~~~~~---~~~~~~~~i~Dt~G~ 60 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYFVTD-----YDP------TI---EDS-Y-T----KQCEI---DGQWAILDILDTAGQ 60 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcc-----cCC------Cc---cce-E-E----EEEEE---CCEEEEEEEEECCCC
Confidence 699999999999999999975432100 000 00 000 0 0 01111 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHH----HHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
.+|...+...++.+|++++|+|+.+....+... .+... ...++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 999999999999999999999998754322221 12222 234789999999999863
No 139
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.30 E-value=1.2e-11 Score=124.71 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=79.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+++|+....... . ...++.......+.. ++....++|+|||||
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~-------~------------~~~~~~~~~~~~~~~---~~~~~~l~l~D~~G~ 59 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED-------S------------QHTIGVEFGSKIIRV---GGKRVKLQIWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-------C------------CCceeeeEEEEEEEE---CCEEEEEEEEECcch
Confidence 699999999999999999975332110 0 001111111111112 234567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHH---HHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHA---IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~---~~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++|+|+|+.++.+.+....| ..+ ...++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 60 ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 99999889999999999999999987655443333 222 235789999999999863
No 140
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.30 E-value=1e-11 Score=126.08 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=70.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCc-eEEEEeeCCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKS-YLCNIMDSPG 220 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~-~~inlIDTPG 220 (989)
||+++|+.|+|||||+++|......+. . ..+ .|.......+.+ .. ..++|+||||
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~---~-~~~---------------~t~~~~~~~~~~-----~~~~~~~l~DtpG 57 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA---D-YPF---------------TTLVPNLGVVRV-----DDGRSFVVADIPG 57 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc---C-CCc---------------cccCCcceEEEc-----CCCCeEEEEecCc
Confidence 699999999999999999964322110 0 011 111111111222 23 3799999999
Q ss_pred ccc-------chHHHHHHhhhcCeEEEEeecCCC-cccch-HHHHHHHHH-----cCCCEEEEEEcccccc
Q 001965 221 HVN-------FSDEMTAALRLADGAVLIVDAAEG-VMVNT-ERAIRHAIQ-----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~d-------f~~ev~~alr~aD~ailVVDa~eg-v~~qt-~~~l~~~~~-----~~ip~ilviNKiD~~~ 277 (989)
+.+ +.....+.++.+|++++|+|+..+ -..+. ..+.+.+.. .++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 58 LIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred ccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 742 344455667789999999999986 22222 222333332 3689999999999863
No 141
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.30 E-value=1.9e-11 Score=124.83 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=79.8
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
++.+|+++|+.|+|||||+++|+... .. . .+ ...+........+.+ +++.+.++++||
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~--~~------~---~~--------~~t~~~~~~~~~~~~---~~~~~~~~i~Dt 58 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGR--FP------E---RT--------EATIGVDFRERTVEI---DGERIKVQLWDT 58 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CC------C---cc--------ccceeEEEEEEEEEE---CCeEEEEEEEeC
Confidence 35689999999999999999996321 11 0 00 011111111122222 335678999999
Q ss_pred CCcccchH-HHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHHH----cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSD-EMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~-ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~~----~~ip~ilviNKiD~~~ 277 (989)
||+.+|.. .....++.+|++|+|+|+......+....|. .+.. .++|+++|+||+|+..
T Consensus 59 ~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 59 AGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred CChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 99998874 4566788999999999999876665555554 3332 3589999999999863
No 142
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.29 E-value=4.2e-11 Score=119.89 Aligned_cols=113 Identities=25% Similarity=0.357 Sum_probs=78.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+.|+++|++|+|||||+++|+...-... .......+ ...+++ + ......+.++||||
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~---~~~~~~~~-------~~~~~~--------~-----~~~~~~~~liDtpG 60 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIV---SPKPQTTR-------NRIRGI--------Y-----TDDDAQIIFVDTPG 60 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEec---cCCCCcee-------ceEEEE--------E-----EcCCeEEEEEECCC
Confidence 4699999999999999999975422111 00000000 000110 1 11346789999999
Q ss_pred cccch--------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HVNFS--------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~--------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+.+.. ......++.+|++++|+|+.+........+++.+...+.|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 61 IHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 86543 234566889999999999998866667777777777789999999999997
No 143
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.29 E-value=1.6e-11 Score=122.37 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=76.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|++|+|||||+++|........ .. ..+++.......+.+ .+..++++||||+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~---~~---------------~~~~~~~~~~~~~~~-----~~~~~~i~DtpG~ 59 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIV---SD---------------IAGTTRDVIEESIDI-----GGIPVRLIDTAGI 59 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEec---cC---------------CCCCccceEEEEEEe-----CCEEEEEEECCCc
Confidence 599999999999999999975432211 00 112222222222222 4567999999999
Q ss_pred ccchHH--------HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSDE--------MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~e--------v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.++... +...++.+|++++|+|+...........+.. ..+.|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 60 RETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 877532 4467789999999999997655555444444 56789999999999974
No 144
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.28 E-value=4.7e-12 Score=148.92 Aligned_cols=111 Identities=21% Similarity=0.348 Sum_probs=78.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|++|+|||||+++|+.....+. ....+ .|.......+.+ .++.++|+||||
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v---~~~~g---------------tT~d~~~~~i~~-----~g~~i~l~DT~G 272 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIV---TDIAG---------------TTRDVIEEHINL-----DGIPLRLIDTAG 272 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCC---------------cccccEEEEEEE-----CCeEEEEEeCCC
Confidence 3699999999999999999976543222 11111 122111122223 456799999999
Q ss_pred cccchHH--------HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HVNFSDE--------MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~e--------v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+.++.+. ....++.+|++|+|+|+..+.......+|.. ..++|+++|+||+|+.
T Consensus 273 ~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 273 IRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 9876543 3346788999999999998876665555555 4578999999999986
No 145
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.27 E-value=2.6e-11 Score=122.07 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=78.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|++|+|||||+++|+...-.. . ..+.++.......+.+ ++....++++||||+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~------~-------------~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~ 59 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE------Q-------------YKSTIGVDFKTKTIEV---DGKRVKLQIWDTAGQ 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------C-------------CCCceeeEEEEEEEEE---CCEEEEEEEEECCCh
Confidence 59999999999999999997432100 0 0111122212222222 234467999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHHH---cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~~---~~ip~ilviNKiD~~~ 277 (989)
..|.......++.+|++|+|+|+.+..+.+....|. .+.. .++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 60 ERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 999999999999999999999998865554433332 2222 4689999999999763
No 146
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.27 E-value=2e-11 Score=122.75 Aligned_cols=111 Identities=17% Similarity=0.278 Sum_probs=75.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+++|..++|||||+++|....... ..+..+ .|.++ ..+.+ ++..++++||||+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~----------~~~~~t------~g~~~----~~~~~-----~~~~~~l~Dt~G~ 55 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS----------QIIVPT------VGFNV----ESFEK-----GNLSFTAFDMSGQ 55 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc----------ceecCc------cccce----EEEEE-----CCEEEEEEECCCC
Confidence 58999999999999999996432100 011111 11111 11112 5678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHH------HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAI------QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~------~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++|+|+|+.++.... ....++.+. ..++|+++|+||+|+..
T Consensus 56 ~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 56 GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 999999999999999999999998764321 112222221 24789999999999863
No 147
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.27 E-value=4.9e-11 Score=125.94 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=76.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+++|+.++|||||+.+|..... . .+++- +......+... ..++...+.|+||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--~---------~t~~s-----------~~~~~~~~~~~-~~~~~~~~~l~D~pG 57 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--R---------STVTS-----------IEPNVATFILN-SEGKGKKFRLVDVPG 57 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--C---------CccCc-----------EeecceEEEee-cCCCCceEEEEECCC
Confidence 4799999999999999999964321 0 00100 00001111111 012456799999999
Q ss_pred cccchHHHHHHhhhc-CeEEEEeecCCCcc--cchHHHHHHH----H--HcCCCEEEEEEccccccc
Q 001965 221 HVNFSDEMTAALRLA-DGAVLIVDAAEGVM--VNTERAIRHA----I--QERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 221 h~df~~ev~~alr~a-D~ailVVDa~egv~--~qt~~~l~~~----~--~~~ip~ilviNKiD~~~~ 278 (989)
|..|.......++.+ +++|+|||+..... ..+...+..+ . ..++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 58 HPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 999999999999999 99999999998631 1122222221 1 247899999999998754
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.26 E-value=8.9e-12 Score=125.05 Aligned_cols=110 Identities=23% Similarity=0.332 Sum_probs=73.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.||++|.+|+|||||.|+|......+. . - .|.|+......+.+ .+..+.|+||||.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~---n-~---------------pG~Tv~~~~g~~~~-----~~~~~~lvDlPG~ 57 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVG---N-W---------------PGTTVEKKEGIFKL-----GDQQVELVDLPGI 57 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEE---E-S---------------TTSSSEEEEEEEEE-----TTEEEEEEE----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceec---C-C---------------CCCCeeeeeEEEEe-----cCceEEEEECCCc
Confidence 499999999999999999965442111 1 1 12233322233333 5678999999996
Q ss_pred ccch----HHH--HHHh--hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFS----DEM--TAAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~----~ev--~~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
-++. +|. ..++ ...|++|+|+||.. ......+..++.+.++|+++++||+|...
T Consensus 58 ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 58 YSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred ccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 5432 222 2333 47899999999987 34556677888899999999999999973
No 149
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.26 E-value=3.9e-11 Score=120.85 Aligned_cols=116 Identities=18% Similarity=0.348 Sum_probs=78.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|....- . . . + ...+........+.+. ..+....++|+||||+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~--~---~-~-----~--------~~t~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--T---K-D-----Y--------KKTIGVDFLEKQIFLR-QSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C---C-C-----C--------CCcEEEEEEEEEEEEc-CCCCEEEEEEeeCCch
Confidence 599999999999999999964321 0 0 0 0 0111111111122221 1135678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++++|+|+.+.........|..... .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 62 EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 9999989999999999999999987654444333333222 3789999999999863
No 150
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.26 E-value=3.2e-11 Score=121.33 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=78.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+++|+.++|||||+++|+....... ...+++.......+.+ ++....++++||||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~l~~~D~~G 58 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ-------------------YQATIGIDFLSKTMYL---EDKTVRLQLWDTAG 58 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-------------------CCCceeeeEEEEEEEE---CCEEEEEEEEECCC
Confidence 3699999999999999999975432111 0111222222222222 22446799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHH-Hc--CCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAI-QE--RLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~-~~--~ip~ilviNKiD~~ 276 (989)
+..|...+...++.+|++|+|+|+....+.+... .+.... .. ++|+++++||+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 59 QERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred cHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 9999988999999999999999998765443332 233322 23 48999999999985
No 151
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.25 E-value=2.4e-11 Score=123.10 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=70.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+++|++|+|||||+++|..... .. + .| ....+.. + ++|||||
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~--------~~------------~---~~-----~~v~~~~---~----~~iDtpG 46 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT--------LA------------R---KT-----QAVEFND---K----GDIDTPG 46 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc--------cC------------c---cc-----eEEEECC---C----CcccCCc
Confidence 4799999999999999999842110 00 0 00 1111211 1 3799999
Q ss_pred c----ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 H----VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h----~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
. .++..++..+++.+|++|+|+|+.++....+..+++. ..+.|+++++||+|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 47 EYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred cccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 6 4677777888999999999999998876655544442 2467999999999985
No 152
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.25 E-value=3.4e-11 Score=122.35 Aligned_cols=114 Identities=25% Similarity=0.300 Sum_probs=76.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.|+|||||+++|+...-... . ..+ .+... ....+.+ .+....++++||||+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~-----~-~~t-----------~~~~~--~~~~~~~---~~~~~~~~~~D~~g~ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQ-----Y-KAT-----------IGADF--LTKEVTV---DDKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC-----c-CCc-----------cceEE--EEEEEEE---CCEEEEEEEEeCCCh
Confidence 599999999999999999975321000 0 000 01111 1111222 224567889999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHH-----HH---HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRH-----AI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~-----~~---~~~ip~ilviNKiD~~~ 277 (989)
..|.......++.+|++|+|+|+......+....|.. +. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 60 ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 9999988899999999999999987654322222221 11 12789999999999973
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.25 E-value=7.4e-11 Score=123.85 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=74.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+....+|+++|+.|+|||||+++|....- . .....|+|..... +.+ . .++++
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~--~-----------------~~~~~~~t~~~~~--~~~-----~--~~~l~ 57 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKV--R-----------------VGKRPGVTRKPNH--YDW-----G--DFILT 57 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCC--c-----------------cCCCCceeeCceE--Eee-----c--ceEEE
Confidence 44556899999999999999999963221 0 0012244443222 222 1 48999
Q ss_pred eCCCccc-----------chHHHH----HHhhhcCeEEEEeecCCC-----------cccchHHHHHHHHHcCCCEEEEE
Q 001965 217 DSPGHVN-----------FSDEMT----AALRLADGAVLIVDAAEG-----------VMVNTERAIRHAIQERLPIVVVV 270 (989)
Q Consensus 217 DTPGh~d-----------f~~ev~----~alr~aD~ailVVDa~eg-----------v~~qt~~~l~~~~~~~ip~ilvi 270 (989)
||||+.. |...+. +++..+|++++|+|+... ....+.++++.+...++|+++|+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~ 137 (201)
T PRK04213 58 DLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAV 137 (201)
T ss_pred eCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEE
Confidence 9999532 222222 234567899999998643 22345677777777899999999
Q ss_pred Eccccc
Q 001965 271 NKVDRL 276 (989)
Q Consensus 271 NKiD~~ 276 (989)
||+|+.
T Consensus 138 NK~Dl~ 143 (201)
T PRK04213 138 NKMDKI 143 (201)
T ss_pred ECcccc
Confidence 999986
No 154
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.24 E-value=4.1e-11 Score=122.15 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-+|+++|++|+|||||+++|+...-... .. . ..|.+... ..+.+ ++....++|+||||
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----~~--~----------t~~~~~~~--~~~~~---~~~~~~~~i~Dt~G 62 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-----HD--L----------TIGVEFGA--RMITI---DGKQIKLQIWDTAG 62 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----CC--C----------ccceeEEE--EEEEE---CCEEEEEEEEECCC
Confidence 4699999999999999999974321111 00 0 11111111 11222 22445799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHHH---cCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~~---~~ip~ilviNKiD~~ 276 (989)
+..|.......++.+|++|+|+|+......+....|. .+.. .++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 63 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999988889999999999999998755444333332 2222 367999999999986
No 155
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.24 E-value=4.9e-11 Score=147.75 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=77.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++||+|+|||||+|+|.... .+.|. ..|.|+......+.+ +++.++++||||
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~---~~vgn----------------~pGvTve~k~g~~~~-----~~~~i~lvDtPG 59 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR---QRVGN----------------WAGVTVERKEGQFST-----TDHQVTLVDLPG 59 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---CccCC----------------CCCceEeeEEEEEEc-----CceEEEEEECCC
Confidence 479999999999999999995322 11111 123344333333333 667899999999
Q ss_pred cccchH--------HHHH--Hh--hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HVNFSD--------EMTA--AL--RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~--------ev~~--al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+.+|.. |... .+ ..+|++|+|+|++.... ...++.++.+.++|+++|+||+|+.
T Consensus 60 ~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 60 TYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred ccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 988753 2222 22 26899999999998643 3446677888899999999999986
No 156
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.24 E-value=4.7e-11 Score=115.35 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=77.2
Q ss_pred EEEEeeeeccccc--eeeeecC--CCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEe
Q 001965 676 VSFCETVVESSSM--KCFAETP--NKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAF 751 (989)
Q Consensus 676 V~yrETI~~~s~~--~~~a~t~--nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~f 751 (989)
|+|||||.++... .+-.++. ..+++|+++++|++++.. .+ ..+.|
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~----~~---------------------------~~i~~ 49 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSS----PV---------------------------ELIEL 49 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCC----CC---------------------------ceeEe
Confidence 6899999987542 2222322 234899999999975410 00 00111
Q ss_pred CCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHH
Q 001965 752 GPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRV 831 (989)
Q Consensus 752 gP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a 831 (989)
.+.. +..+|+.++ ++|.+|++.|++.|||+|+||+||+|+|.++.++.... ....+.+++.|
T Consensus 50 ----------~~~~-~~~~p~~~~----~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s---~~~~~~Aa~~a 111 (120)
T cd01693 50 ----------ANSA-IEVLLKRIQ----EAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTS---PTMISACASQC 111 (120)
T ss_pred ----------cCcc-CCcChHHHH----HHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCC---HHHHHHHHHHH
Confidence 1111 233555555 56679999999999999999999999999998864321 13345678999
Q ss_pred HHHHHhhcC
Q 001965 832 AYSAFLMAT 840 (989)
Q Consensus 832 ~~~a~~~A~ 840 (989)
+++||.+|+
T Consensus 112 ~~~al~~a~ 120 (120)
T cd01693 112 VQKALKSAG 120 (120)
T ss_pred HHHHHHhcc
Confidence 999998774
No 157
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.24 E-value=4.1e-11 Score=121.53 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
|+|+++|+.|+|||||+++|........ . ..+.|.......+. .++..++|+||||
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~------~-------------~~~~t~~~~~~~~~-----~~~~~~~i~Dt~G 56 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA------P-------------YPFTTKSLFVGHFD-----YKYLRWQVIDTPG 56 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC------C-------------CCCcccceeEEEEc-----cCceEEEEEECCC
Confidence 6899999999999999999975322110 0 00111111111111 1457899999999
Q ss_pred cccch--------HHHHHHh-hhcCeEEEEeecCCCcc---cchHHHHHHHHHc--CCCEEEEEEccccc
Q 001965 221 HVNFS--------DEMTAAL-RLADGAVLIVDAAEGVM---VNTERAIRHAIQE--RLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~--------~ev~~al-r~aD~ailVVDa~egv~---~qt~~~l~~~~~~--~ip~ilviNKiD~~ 276 (989)
+.+.. .....++ ..+|++|+|+|+..... .....++..+... ++|+++|+||+|..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 57 LLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred cCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 85321 1122222 34699999999987532 1122344555444 78999999999996
No 158
>PTZ00369 Ras-like protein; Provisional
Probab=99.24 E-value=3.4e-11 Score=125.48 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=76.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++++.... . ..+..+......+.+++ ++..+.++|+||||
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~--~---------~~~~~t~~~~~~~~~~~------------~~~~~~l~i~Dt~G 62 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF--I---------DEYDPTIEDSYRKQCVI------------DEETCLLDILDTAG 62 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--C---------cCcCCchhhEEEEEEEE------------CCEEEEEEEEeCCC
Confidence 4699999999999999999975321 1 00101111111111111 23556789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHH----HHcCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHA----IQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~----~~~~ip~ilviNKiD~~ 276 (989)
+.+|.......++.+|++|+|+|+.+..+..... .+..+ ...++|+++|+||+|+.
T Consensus 63 ~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 63 QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred CccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999998764322222 22222 23478999999999975
No 159
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.24 E-value=1.1e-10 Score=121.65 Aligned_cols=148 Identities=17% Similarity=0.262 Sum_probs=93.3
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+...++|+++|+.|+|||||+++|+.... +. .+..+ .|.|....... .+..+.|+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~----------~~~~~------~~~t~~~~~~~--------~~~~l~l~ 75 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKN-LA----------RTSKT------PGRTQLINFFE--------VNDKLRLV 75 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc----------cccCC------CCceeEEEEEe--------cCCeEEEe
Confidence 45778999999999999999999975321 11 00000 11222111111 12568999
Q ss_pred eCCCcc----------cchHHHHHHhhh---cCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCC
Q 001965 217 DSPGHV----------NFSDEMTAALRL---ADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLP 283 (989)
Q Consensus 217 DTPGh~----------df~~ev~~alr~---aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~ 283 (989)
||||+. .|...+...++. ++++++|+|+..+.......+++.+...++|+++++||+|.....
T Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~---- 151 (196)
T PRK00454 76 DLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG---- 151 (196)
T ss_pred CCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH----
Confidence 999963 333333444444 468889999988877776677777777899999999999986321
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 284 PKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 284 p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
+ .+.+.+++...+... ...+...||+.|.+
T Consensus 152 --~----~~~~~~~i~~~l~~~-------------~~~~~~~Sa~~~~g 181 (196)
T PRK00454 152 --E----RKKQLKKVRKALKFG-------------DDEVILFSSLKKQG 181 (196)
T ss_pred --H----HHHHHHHHHHHHHhc-------------CCceEEEEcCCCCC
Confidence 1 233444555555431 11355678888864
No 160
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.23 E-value=6.2e-11 Score=138.85 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=80.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+|+|++|+|||||+++|+.....+. ...++ .|.......+.+ +++.++++||||
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aiv---s~~pg---------------tTrd~~~~~i~~-----~g~~v~l~DTaG 260 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIV---SDIKG---------------TTRDVVEGDFEL-----NGILIKLLDTAG 260 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCccc---CCCCC---------------cEEEEEEEEEEE-----CCEEEEEeeCCC
Confidence 3699999999999999999986544332 11122 222222223333 457789999999
Q ss_pred cccchHHH--------HHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HVNFSDEM--------TAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev--------~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+.++.+.+ ..+++.+|++|+|+|+..+...... .+..+...++|+++|+||+|+.
T Consensus 261 ~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 261 IREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred cccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 97765432 3577899999999999987765544 5566666788999999999985
No 161
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.22 E-value=5.8e-11 Score=122.15 Aligned_cols=113 Identities=23% Similarity=0.291 Sum_probs=77.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
|+|+++|++|+|||||+++|+....... +..+......+.++ + .+.++.+.++||||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~-----------~~~t~~~~~~~~~~---------~---~~~~~~~~l~D~~g 58 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVES-----------YYPTIENTFSKIIR---------Y---KGQDYHLEIVDTAG 58 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc-----------cCcchhhhEEEEEE---------E---CCEEEEEEEEECCC
Confidence 6899999999999999999975332110 00111111111111 1 22456789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH----HcCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~----~~~ip~ilviNKiD~~ 276 (989)
+.+|.......++.+|++|+|+|+..+...+....+ .... ..++|+++++||+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 59 QDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred hHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 999998888999999999999999986554443322 2222 2467999999999986
No 162
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.22 E-value=3.1e-11 Score=127.10 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=72.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
..+.+|+|+|++|+|||||+++|+....... ... +.|+......+.+. ..+.+.|+|
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~----~~~---------------~~t~~~~~~~~~~~----~~~~~~i~D 95 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE----DQL---------------FATLDPTTRRLRLP----DGREVLLTD 95 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC----Ccc---------------ceeccceeEEEEec----CCceEEEeC
Confidence 4567899999999999999999975421110 000 11121111122221 223799999
Q ss_pred CCCcccc-hH-------HHHHHhhhcCeEEEEeecCCCcccchHHH----HHHHHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVNF-SD-------EMTAALRLADGAVLIVDAAEGVMVNTERA----IRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df-~~-------ev~~alr~aD~ailVVDa~egv~~qt~~~----l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|||+.+. .. .+...++.+|++++|+|+.++........ ++.+...++|+++|+||+|+..
T Consensus 96 t~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 96 TVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred CCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 9998532 11 12234678999999999998765443322 2222234689999999999973
No 163
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.22 E-value=7.7e-11 Score=116.99 Aligned_cols=113 Identities=21% Similarity=0.353 Sum_probs=77.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+++|........ + .+..+.......+.. ++....++++||||+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-----------~--------~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~ 59 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-----------Y--------KSTIGVDFKSKTIEI---DGKTVKLQIWDTAGQ 59 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-----------c--------CCceeeeeEEEEEEE---CCEEEEEEEEecCCh
Confidence 599999999999999999964322110 0 011111112222222 224567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHHc---CCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQE---RLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~~---~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+.+....... ..+..+... ++|+++++||+|..
T Consensus 60 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 60 ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999999999999999999874333332 233344443 48999999999996
No 164
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.22 E-value=6.7e-11 Score=119.49 Aligned_cols=113 Identities=18% Similarity=0.277 Sum_probs=75.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|+.|+|||||+++|+...-... ... ...+.. . ..+.. +++.+.+.++||||+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~-----~~~--t~~~~~----~---------~~~~~---~~~~~~l~i~Dt~g~ 58 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD-----YDP--TIEDSY----R---------KQIEI---DGEVCLLDILDTAGQ 58 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-----cCC--chhhhE----E---------EEEEE---CCEEEEEEEEECCCc
Confidence 589999999999999999975432110 000 000100 0 01111 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHH----HHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++++|+|+....+.....- +..+ ...++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 59 EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999999987533222111 1222 223679999999999863
No 165
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.22 E-value=5.4e-11 Score=123.34 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=75.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|+.|+|||||+++|+..... . . .. ..|.+.. ...+. ..+++...++++||||+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~-~---~-~~-------------t~~~~~~--~~~~~--~~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV-N---T-VP-------------TKGFNTE--KIKVS--LGNSKGITFHFWDVGGQ 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC-C---c-CC-------------cccccee--EEEee--ccCCCceEEEEEECCCc
Confidence 3899999999999999999643211 0 0 00 0011111 11111 11335678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-----HHHHHHHHHcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-----ERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-----~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+...-.... .++++.....++|+++|+||+|..
T Consensus 63 ~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 63 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 9998888888999999999999987532221 122233334578999999999986
No 166
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.22 E-value=6.7e-11 Score=113.13 Aligned_cols=106 Identities=22% Similarity=0.325 Sum_probs=72.7
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+|+|.+|+|||||+++|+....... ....+.++. .....+.+ .+..+.|+||||..
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~---~~~~~~T~~---------------~~~~~~~~-----~~~~~~~vDtpG~~ 58 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKV---SNIPGTTRD---------------PVYGQFEY-----NNKKFILVDTPGIN 58 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEE---SSSTTSSSS---------------EEEEEEEE-----TTEEEEEEESSSCS
T ss_pred EEEECCCCCCHHHHHHHHhccccccc---cccccceee---------------eeeeeeee-----ceeeEEEEeCCCCc
Confidence 89999999999999999985332111 111111110 00011112 45567899999985
Q ss_pred c---------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEc
Q 001965 223 N---------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 223 d---------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNK 272 (989)
+ ......+.++.+|++++|||+..........+++.+. .+.|+++|+||
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 59 DGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred ccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 4 2334666778999999999988855556677777775 88999999998
No 167
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.21 E-value=6.3e-11 Score=118.81 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=74.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++|+...- . . .+..+....... .+.+ ++..+.++++||||+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~--~---~------~~~~t~~~~~~~---------~~~~---~~~~~~~~i~Dt~G~ 59 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF--V---D------EYDPTIEDSYRK---------QVVI---DGETCLLDILDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--c---C------CcCCcchheEEE---------EEEE---CCEEEEEEEEECCCC
Confidence 599999999999999999975321 1 0 000000000001 1111 224466889999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHH----HHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
..|.......++.+|++++|+|.......+.. ..+..+ ...++|+++|+||+|+..
T Consensus 60 ~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 60 EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999999999864332221 122222 234789999999999863
No 168
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.21 E-value=5.3e-11 Score=119.84 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=73.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+++|..... . . +.. .-+.++ ..+.+ .+..++++||||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~------~----~~~------t~~~~~----~~~~~-----~~~~~~i~Dt~G~ 53 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--V------T----TIP------TIGFNV----ETVTY-----KNLKFQVWDLGGQ 53 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--c------C----cCC------ccCcCe----EEEEE-----CCEEEEEEECCCC
Confidence 489999999999999999953211 1 0 000 001111 11222 4567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHH-HH---HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRH-AI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~-~~---~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++|+|+|+.+..... ....+.. +. ..++|+++|+||+|+..
T Consensus 54 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 54 TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 999988888999999999999998743221 1222222 22 24789999999999863
No 169
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.21 E-value=7.8e-11 Score=123.72 Aligned_cols=113 Identities=20% Similarity=0.286 Sum_probs=75.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.|+|||||+++|+...- . ..+..+.... ....+.+ .+....++|+||||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~---------~~~~~t~~~~---------~~~~~~~---~~~~~~l~i~D~~G~ 57 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--E---------PKYRRTVEEM---------HRKEYEV---GGVSLTLDILDTSGS 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--C---------ccCCCchhhh---------eeEEEEE---CCEEEEEEEEECCCc
Confidence 389999999999999999975321 1 0010110000 0011222 223467899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHH----HHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~----~~~~ip~ilviNKiD~~~ 277 (989)
.+|......+++.+|++|+|+|+++....+....| ..+ ...++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 58 YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 99988888899999999999999876433322222 222 225789999999999863
No 170
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.21 E-value=9.1e-11 Score=119.37 Aligned_cols=116 Identities=24% Similarity=0.281 Sum_probs=77.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|..++|||||+++|....- . ..+..+ -++... ...+.+ ++..+.+.++|||
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f--~---------~~~~~t------~~~~~~--~~~~~~---~~~~~~l~l~D~~ 60 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--N---------PSFIST------IGIDFK--IRTIEL---DGKKIKLQIWDTA 60 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC--C---------cccccC------ccceEE--EEEEEE---CCEEEEEEEEeCC
Confidence 46799999999999999999964321 1 000000 011111 111222 2345678999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH---HcCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~---~~~ip~ilviNKiD~~~ 277 (989)
|+.+|.......++.+|++|+|+|+.++.+.....-| ..+. ..++|++++.||+|+..
T Consensus 61 g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 61 GQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred chHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999998888999999999999999876543332222 2222 24679999999999973
No 171
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.20 E-value=5.7e-11 Score=123.44 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=79.5
Q ss_pred HhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCc
Q 001965 131 VGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKS 210 (989)
Q Consensus 131 ~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~ 210 (989)
.+.|....+-.+|+++|+.|+|||||+++|..... . .+.. |+......+.+ .+
T Consensus 10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~--~----------~~~~----------T~~~~~~~i~~-----~~ 62 (190)
T cd00879 10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRL--A----------QHVP----------TLHPTSEELTI-----GN 62 (190)
T ss_pred HHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCC--c----------ccCC----------ccCcceEEEEE-----CC
Confidence 33455455567799999999999999999963211 0 0000 01011112222 34
Q ss_pred eEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCccc-chHHHHHHHH----HcCCCEEEEEEccccc
Q 001965 211 YLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMV-NTERAIRHAI----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 211 ~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~-qt~~~l~~~~----~~~ip~ilviNKiD~~ 276 (989)
..+.++||||+..|.......++.+|++++|+|+.+.-.. .....+..+. ..+.|+++++||+|+.
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 6789999999999988888899999999999999864221 1222222222 3568999999999986
No 172
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.20 E-value=7.7e-11 Score=119.47 Aligned_cols=112 Identities=20% Similarity=0.370 Sum_probs=73.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+.+++... .. ..|..+........+.+ +++...++|+||||+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~---------~~~~~t~~~~~~~~~~~------------~~~~~~~~i~D~~g~ 57 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI---------GEYDPNLESLYSRQVTI------------DGEQVSLEILDTAGQ 57 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc---------cccCCChHHhceEEEEE------------CCEEEEEEEEECCCC
Confidence 48999999999999999997421 11 00111110000111111 234567899999999
Q ss_pred cc-chHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH-----HcCCCEEEEEEccccc
Q 001965 222 VN-FSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI-----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~d-f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~-----~~~ip~ilviNKiD~~ 276 (989)
.. +.......++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 58 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 58 QQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred cccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 85 466778899999999999999987544332222 2222 2378999999999975
No 173
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=9.8e-11 Score=119.11 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=76.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.|+|||||+++|+.... .. . +..... ..++. .. .++..+.++++||||+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~--~-------~~~~~~-----~~~~~-----~~---~~~~~~~~~i~Dt~G~ 57 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PE--N-------VPRVLP-----EITIP-----AD---VTPERVPTTIVDTSSR 57 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Cc--c-------CCCccc-----ceEee-----ee---ecCCeEEEEEEeCCCc
Confidence 589999999999999999975321 10 0 000000 01111 11 1235678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHH-HHHH--HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAI-RHAI--QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l-~~~~--~~~ip~ilviNKiD~~~ 277 (989)
..+...+...++.+|++++|+|+......... ..| ..+. ..++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 58 PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 98888888889999999999999876655442 223 3333 23689999999999964
No 174
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.20 E-value=1e-10 Score=117.96 Aligned_cols=113 Identities=20% Similarity=0.286 Sum_probs=75.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+++|+...... .+.. .+++......+.+ ++....++|+||||+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-----------~~~~--------t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~ 59 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-----------KYLP--------TIGIDYGVKKVSV---RNKEVRVNFFDLSGH 59 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-----------CCCC--------ccceeEEEEEEEE---CCeEEEEEEEECCcc
Confidence 59999999999999999997533210 0000 0111111111112 235678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH--------cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ--------ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~--------~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+++........-| ..+.+ .+.|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 60 PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 99998888889999999999999875433222222 22211 457999999999986
No 175
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.20 E-value=8.2e-11 Score=120.04 Aligned_cols=109 Identities=27% Similarity=0.377 Sum_probs=75.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|... .. ..+.. ..|.+ ...+.+ +++.++++||||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~---------~~~~~------t~g~~----~~~~~~-----~~~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP---------KKVAP------TVGFT----PTKLRL-----DKYEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC---------ccccC------cccce----EEEEEE-----CCEEEEEEECCCc
Confidence 4899999999999999999632 11 00000 01111 112222 4678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
..|.......++.||++|+|+|+...-... ....+..+.. .++|+++|+||+|+..
T Consensus 54 ~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 54 ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 999999899999999999999998743222 2333343332 4689999999999864
No 176
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.19 E-value=1.1e-10 Score=118.50 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=76.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|..|+|||||+++|+...... .+..+ -+...... .+.+ ++....+.++||||
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-----------~~~~t------~~~~~~~~--~~~~---~~~~~~~~i~D~~G 60 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-----------SYIST------IGVDFKIR--TIEL---DGKTIKLQIWDTAG 60 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-----------CCCCc------cceeEEEE--EEEE---CCEEEEEEEEECCC
Confidence 579999999999999999997432110 00000 01111111 1222 23456789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++|+|+|+.+........ .+..+.. .++|++++.||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 61 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred cHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 9999998899999999999999998754322222 2222222 4679999999999753
No 177
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.19 E-value=1.8e-10 Score=121.16 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=72.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|..|+|||||+++|+.... . . .+..+... .+.. ..+.+ +++.+.++|+||||+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f--~---~------~~~pt~~~------~~~~--~~i~~---~~~~~~l~i~Dt~G~ 59 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--P---E------EYIPTEHR------RLYR--PAVVL---SGRVYDLHILDVPNM 59 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC--C---c------ccCCcccc------ccce--eEEEE---CCEEEEEEEEeCCCc
Confidence 599999999999999999974321 1 0 00000000 0000 01112 234577899999998
Q ss_pred ccch----HH----HHHHhhhcCeEEEEeecCCCcccchHHH-HHHHH------HcCCCEEEEEEcccccc
Q 001965 222 VNFS----DE----MTAALRLADGAVLIVDAAEGVMVNTERA-IRHAI------QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~----~e----v~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~------~~~ip~ilviNKiD~~~ 277 (989)
..|. .+ ...+++.||++|+|+|+......+.... ++.+. ..++|+++|.||+|+..
T Consensus 60 ~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 60 QRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred ccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 7652 12 4456889999999999997654433222 22222 24689999999999964
No 178
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.19 E-value=7.5e-11 Score=118.74 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=76.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.|+|||||+++|+....... + +...+.+.... .+.+ .+....+.++||||+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~------~~~~~~~~~~~--~~~~---~~~~~~~~l~D~~g~ 59 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-----------L------AATIGVDFKVK--TLTV---DGKKVKLAIWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-----------c------CCcccceEEEE--EEEE---CCEEEEEEEEECCCc
Confidence 589999999999999999974322110 0 00111111111 1112 224567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-----HHHHcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-----HAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-----~~~~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+......+....|. ++...++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 60 ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 999888888999999999999998765433332222 2223568999999999997
No 179
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.19 E-value=1e-10 Score=119.17 Aligned_cols=113 Identities=22% Similarity=0.332 Sum_probs=77.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++++.... . ..+.. .-++.+ ....+.. +++...+.++||||+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~---------~~~~~------t~~~~~--~~~~~~~---~~~~~~l~i~Dt~G~ 59 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF--E---------KKYVA------TLGVEV--HPLDFHT---NRGKIRFNVWDTAGQ 59 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C---------CCCCC------ceeeEE--EEEEEEE---CCEEEEEEEEECCCC
Confidence 599999999999999999974321 1 00101 011111 1122222 335678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~--~~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|+..+...+....| +.+.. .++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 60 EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 99888777888999999999999987554433323 33322 268999999999986
No 180
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.19 E-value=1.1e-10 Score=121.19 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=80.1
Q ss_pred hccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceE
Q 001965 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYL 212 (989)
Q Consensus 133 l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 212 (989)
++..+.+-.+|+++|..|+|||||+++|.... .. ...+ .++.++ ..+.+ ++..
T Consensus 10 ~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~--~~---~~~~-------------t~~~~~----~~~~~-----~~~~ 62 (184)
T smart00178 10 SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDR--LA---QHQP-------------TQHPTS----EELAI-----GNIK 62 (184)
T ss_pred HhccccccCEEEEECCCCCCHHHHHHHHhcCC--Cc---ccCC-------------ccccce----EEEEE-----CCEE
Confidence 55555666789999999999999999996421 11 0000 011111 11222 4577
Q ss_pred EEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCccc-chHHHHHHHH----HcCCCEEEEEEccccc
Q 001965 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMV-NTERAIRHAI----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 213 inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~-qt~~~l~~~~----~~~ip~ilviNKiD~~ 276 (989)
++++||||+..+.......++.+|++|+|+|+++.... .....+..+. ..++|+++|+||+|+.
T Consensus 63 ~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 63 FTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 99999999999888888999999999999999864321 1222233222 2578999999999985
No 181
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.18 E-value=1.9e-10 Score=116.38 Aligned_cols=113 Identities=17% Similarity=0.278 Sum_probs=75.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++++.. .... ... .+..+ +. ...+.+ ++..+.++|+||||+
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~--~~~~---~~~--~t~~~----------~~---~~~~~~---~~~~~~l~i~Dt~G~ 59 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG--IFVE---KYD--PTIED----------SY---RKQVEV---DGQQCMLEILDTAGT 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCc---ccC--Ccchh----------eE---EEEEEE---CCEEEEEEEEECCCc
Confidence 5999999999999999999742 2210 000 00001 00 011222 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
..|.......++.+|++|+|+|......... ...+..+. ..++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 60 EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 9999999999999999999999876543222 22223222 25689999999999863
No 182
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.17 E-value=1.3e-10 Score=117.01 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=75.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|.+|+|||||+++|+...- . .... ....+.. .+.++ + +++.+.+.++||||+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~---~~~~--~~~~~~~----~~~~~---------~---~~~~~~~~i~D~~g~ 58 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--V---EDYE--PTKADSY----RKKVV---------L---DGEDVQLNILDTAGQ 58 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--c---cccC--CcchhhE----EEEEE---------E---CCEEEEEEEEECCCh
Confidence 699999999999999999975321 1 0000 0001110 11111 1 234567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCccc-chHHHHHHH----HHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMV-NTERAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~-qt~~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
.+|......+++.+|++++|+|+...-.. .....+... ...++|+++|+||+|...
T Consensus 59 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 59 EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 99999999999999999999998764321 112222222 235789999999999864
No 183
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.17 E-value=1.3e-10 Score=119.38 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=75.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
.++|+++|+.++|||||+++|.... .. . .. .|+......+.+ ....+.++|||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~---~--~~---------------~t~~~~~~~~~~-----~~~~~~l~D~~ 67 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VV---H--TS---------------PTIGSNVEEIVY-----KNIRFLMWDIG 67 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CC---C--cC---------------CccccceEEEEE-----CCeEEEEEECC
Confidence 4679999999999999999996321 11 0 00 011111112222 45679999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccc--hHHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVN--TERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~q--t~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|+..|.......++.+|++|+|+|+++..... ...+.+.+.. .++|+++++||+|+..
T Consensus 68 G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 68 GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99999988889999999999999998753221 1222222222 3589999999999863
No 184
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.17 E-value=1.8e-10 Score=116.03 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=74.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++++.... .. .... +..+. ....+ .. ++....+.|+||||+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~--~~---~~~~--t~~~~----~~~~~---------~~---~~~~~~l~i~Dt~G~ 59 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIF--VE---KYDP--TIEDS----YRKQI---------EV---DGQQCMLEILDTAGT 59 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc---ccCC--chhhh----EEEEE---------EE---CCEEEEEEEEECCCc
Confidence 599999999999999999974321 10 0000 00010 00111 11 234567889999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHH----HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++++|+|+.+....... ..+..+. ..++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 60 EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99998888889999999999999864332222 2222332 23689999999999863
No 185
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.17 E-value=1.6e-10 Score=117.29 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|.... .. . .+..+ -|..+... .+.. ++..+.+.|+||||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~---~------~~~~t------~~~~~~~~--~~~~---~~~~~~l~i~Dt~G 60 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FM---A------DCPHT------IGVEFGTR--IIEV---NGQKIKLQIWDTAG 60 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CC---C------CCCcc------cceeEEEE--EEEE---CCEEEEEEEEECCC
Confidence 469999999999999999996431 11 0 00000 01111111 1112 33557789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH---HcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~---~~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++|+|+|+......+....| .... ..+.|+++|.||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 61 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999999999999999999999999875443333222 2222 23579999999999863
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.17 E-value=1.5e-10 Score=114.28 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=78.6
Q ss_pred EEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccc
Q 001965 145 LVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNF 224 (989)
Q Consensus 145 IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df 224 (989)
|+|+.|+|||||+++|........ . ..++.+.........+. ....++++||||+.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~---~---------------~~~~~~~~~~~~~~~~~----~~~~~~~~Dt~g~~~~ 58 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV---S---------------PVPGTTTDPVEYVWELG----PLGPVVLIDTPGIDEA 58 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc---C---------------CCCCcEECCeEEEEEec----CCCcEEEEECCCCCcc
Confidence 589999999999999975432111 0 01111222222222221 2567999999998876
Q ss_pred h-------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 225 S-------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 225 ~-------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
. ......++.+|++++|+|+..+.......++......++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 59 GGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred ccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 4 3455688999999999999998877776666777788999999999999874
No 187
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.3e-10 Score=124.34 Aligned_cols=147 Identities=20% Similarity=0.289 Sum_probs=104.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceec-cCccceeeeeEE--EEeeeeEEE-------eec------
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYT-DTRIDEQERRIS--IKAVPMSLV-------LED------ 205 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~-D~~~~E~~rgit--i~~~~~~~~-------~~~------ 205 (989)
.+|++|..|+|||||+..|-. +.+. .|... .|.. =.+..|...|-| |....+.|. +..
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQ--geLD-nG~Gr---ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQ--GELD-NGNGR---ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred EEEEecCcccCcceeeeeeec--cccc-CCCCe---eeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 489999999999999998842 2222 12221 2211 112334443322 211111111 000
Q ss_pred -CCCCceEEEEeeCCCcccchHHHHHHhhh--cCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCC
Q 001965 206 -SNSKSYLCNIMDSPGHVNFSDEMTAALRL--ADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKL 282 (989)
Q Consensus 206 -~~~~~~~inlIDTPGh~df~~ev~~alr~--aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l 282 (989)
++..+..++|||.+||..+...++.++.. -|.|+|||+|..|+...|++++..+...++|+.++++|||+..
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~----- 317 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD----- 317 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc-----
Confidence 12346789999999999999999999875 4899999999999999999999999999999999999999984
Q ss_pred CchHHHHHHHHHHHHHHHHhhh
Q 001965 283 PPKDAYHKLRHTIEVINNHISA 304 (989)
Q Consensus 283 ~p~~~~~~l~~ii~~in~~l~~ 304 (989)
-+-+++++.++..++..
T Consensus 318 -----~~~~~~tv~~l~nll~~ 334 (591)
T KOG1143|consen 318 -----RQGLKKTVKDLSNLLAK 334 (591)
T ss_pred -----chhHHHHHHHHHHHHhh
Confidence 22367788888888875
No 188
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=2.3e-10 Score=120.43 Aligned_cols=114 Identities=19% Similarity=0.265 Sum_probs=76.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|+...- . ..+. ..+........+.+. .++.+.+.|+||||+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~--~---------~~~~--------~t~~~d~~~~~v~~~--~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF--S---------QHYK--------ATIGVDFALKVIEWD--PNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--C---------CCCC--------CceeEEEEEEEEEEC--CCCEEEEEEEECCCc
Confidence 599999999999999999974321 1 0000 001111111112221 135678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHH-HH-------HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRH-AI-------QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~-~~-------~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+......+....|.. +. ..++|++||+||+|+.
T Consensus 61 ~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 61 ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 9999888899999999999999987544333322221 11 2467999999999986
No 189
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.16 E-value=3.9e-10 Score=122.69 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=83.2
Q ss_pred cccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEe
Q 001965 124 YVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVL 203 (989)
Q Consensus 124 ~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~ 203 (989)
..-+++|.+|-...-..+.|.|+|++|+|||||+.+|......+. +-.. | .+++.+.
T Consensus 152 ~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA---~YPF-----T-------TK~i~vG-------- 208 (346)
T COG1084 152 RKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVA---PYPF-----T-------TKGIHVG-------- 208 (346)
T ss_pred HHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccC---CCCc-----c-------ccceeEe--------
Confidence 344556666655445789999999999999999999943322221 1111 1 2333331
Q ss_pred ecCCCCceEEEEeeCCCcccc--------hHHHHHHhhh-cCeEEEEeecCCCcccchH---HHHHHHH-HcCCCEEEEE
Q 001965 204 EDSNSKSYLCNIMDSPGHVNF--------SDEMTAALRL-ADGAVLIVDAAEGVMVNTE---RAIRHAI-QERLPIVVVV 270 (989)
Q Consensus 204 ~~~~~~~~~inlIDTPGh~df--------~~ev~~alr~-aD~ailVVDa~egv~~qt~---~~l~~~~-~~~ip~ilvi 270 (989)
+...+...|.+|||||.-|- ....+.|++. .+.+++++|+++-....-+ .+++... ..+.|+++|+
T Consensus 209 -hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~ 287 (346)
T COG1084 209 -HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVI 287 (346)
T ss_pred -eeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 11225568999999998652 2345567774 5678889999975433222 3344443 3456999999
Q ss_pred Eccccccc
Q 001965 271 NKVDRLIT 278 (989)
Q Consensus 271 NKiD~~~~ 278 (989)
||+|....
T Consensus 288 nK~D~~~~ 295 (346)
T COG1084 288 NKIDIADE 295 (346)
T ss_pred ecccccch
Confidence 99998853
No 190
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.16 E-value=2.2e-10 Score=120.79 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=78.0
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+++|..|+|||||+.+++... .. . .| ...+++......+.+ +++.+.++|+||+|+.
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~--f~---~------~~--------~~Ti~~~~~~~~i~~---~~~~v~l~iwDtaGqe 60 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDT--FC---E------AC--------KSGVGVDFKIKTVEL---RGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--CC---C------cC--------CCcceeEEEEEEEEE---CCEEEEEEEEeCCCch
Confidence 8999999999999999996422 11 0 00 001111111112222 3356789999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHH-H---HcCCCEEEEEEccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA-I---QERLPIVVVVNKVDRL 276 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~-~---~~~ip~ilviNKiD~~ 276 (989)
.|.......++.||++|+|+|+.+....+....|... . ..++|+++|.||+|+.
T Consensus 61 ~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999999999999999999999986655544333332 2 2468999999999985
No 191
>PLN03118 Rab family protein; Provisional
Probab=99.15 E-value=2.6e-10 Score=121.03 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=77.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+|+|+.|+|||||+++|+...- . . +. ..++.......+.+ ++..+.++|+||||
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~--~---~-------~~--------~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G 71 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV--E---D-------LA--------PTIGVDFKIKQLTV---GGKRLKLTIWDTAG 71 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--C---C-------cC--------CCceeEEEEEEEEE---CCEEEEEEEEECCC
Confidence 4699999999999999999974321 1 0 00 00111111122222 23457799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHH-----HcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAI-----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~-----~~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++|+|+|+......... ..|.... ..++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 72 QERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred chhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999999999875443333 2233221 23579999999999863
No 192
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.15 E-value=2.5e-10 Score=116.26 Aligned_cols=115 Identities=21% Similarity=0.241 Sum_probs=76.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|..++|||||+++|+...- . . .+ ...++.......+.+ +++...+.|+|||
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~--~------~---~~--------~~~~~~~~~~~~~~~---~~~~~~l~i~D~~ 62 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF--D------T---QL--------FHTIGVEFLNKDLEV---DGHFVTLQIWDTA 62 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--C------c---Cc--------CCceeeEEEEEEEEE---CCeEEEEEEEeCC
Confidence 34699999999999999999974211 1 0 00 011111111112222 3456778999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-----HHH---HcCCCEEEEEEccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-----HAI---QERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-----~~~---~~~ip~ilviNKiD~~ 276 (989)
|+..|.......++.+|++|+|+|.......+...-|. .+. ..++|++++.||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 63 GQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred ChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99999998889999999999999988754333322222 111 2457999999999985
No 193
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.15 E-value=1.8e-10 Score=116.05 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=76.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+++|+...-... + ....|.+..... +.+ ++....++++||||+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~------~~t~~~~~~~~~--v~~---~~~~~~~~i~D~~G~ 60 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSEN-----------Q------ESTIGAAFLTQT--VNL---DDTTVKFEIWDTAGQ 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-----------C------CCccceeEEEEE--EEE---CCEEEEEEEEeCCch
Confidence 599999999999999999975332110 0 001111111111 112 235567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCccc-chHHHHHHHHH---cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMV-NTERAIRHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~-qt~~~l~~~~~---~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+...-.. .....+..+.. .++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 61 ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99988888889999999999999865332 22333343333 357899999999986
No 194
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.15 E-value=1e-10 Score=115.59 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=67.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|++|+|||||+++|..... .+ . .|+ .+.+ . -.+|||||+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-------------~~--------~--~t~-----~~~~-----~---~~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-------------LY--------K--KTQ-----AVEY-----N---DGAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-------------cc--------c--cce-----eEEE-----c---CeeecCchh
Confidence 699999999999999999953210 00 0 011 1122 1 158999998
Q ss_pred c----cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 222 V----NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~----df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
. .+...+..+++.+|++|+|+|+.++.+.+...++.. .+.|+++|+||+|+.
T Consensus 46 ~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 46 YVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred hhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 3 334444456899999999999999887776544333 235999999999985
No 195
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.15 E-value=2.2e-10 Score=114.87 Aligned_cols=113 Identities=23% Similarity=0.268 Sum_probs=75.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++|+....... ... +. +.+.... .+.+ .+....++++||||+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~-----~~~------~~------~~~~~~~--~~~~---~~~~~~~~~~D~~g~ 59 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK-----HES------TT------QASFFQK--TVNI---GGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-----cCC------cc------ceeEEEE--EEEE---CCEEEEEEEEECCch
Confidence 699999999999999999975322110 000 00 0001011 1111 124457899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-H---HHHcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-H---AIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~---~~~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++++|+|+.++...+....|. . ....++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 60 ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 998888888889999999999998875443333332 2 222368999999999987
No 196
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.15 E-value=3e-10 Score=115.32 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=76.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|..|+|||||+++++...- . ..+..+..... + .. +.. +.+...++++||||+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f--~---------~~~~~t~~~~~-~------~~--~~~---~~~~~~l~i~Dt~G~ 59 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTF--R---------ESYIPTIEDTY-R------QV--ISC---SKNICTLQITDTTGS 59 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C---------CCcCCcchheE-E------EE--EEE---CCEEEEEEEEECCCC
Confidence 489999999999999999974321 1 00111100000 0 00 111 224567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH------cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ------ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~------~~ip~ilviNKiD~~~ 277 (989)
.+|......+++.+|++|+|+|......... ...+..+.. .++|+++|.||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 60 HQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred CcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 9999888889999999999999987654332 233333332 4689999999999863
No 197
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.15 E-value=2.4e-10 Score=120.16 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=77.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|..|+|||||+++|+...- . ..+.. ..++... ...+.+ .+....++|+||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~--~---------~~~~~------t~~~~~~--~~~~~~---~~~~~~l~l~D~ 62 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF--S---------GSYIT------TIGVDFK--IRTVEI---NGERVKLQIWDT 62 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C---------CCcCc------cccceeE--EEEEEE---CCEEEEEEEEeC
Confidence 456799999999999999999964321 0 00000 0111111 112222 234467899999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH--cCCCEEEEEEccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~--~~ip~ilviNKiD~~ 276 (989)
||+..|.......++.+|++|+|+|+.+.-..+... .+..+.. ..+|++||+||+|+.
T Consensus 63 ~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 63 AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999999999999999998754433222 2233322 357999999999986
No 198
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.14 E-value=2.2e-10 Score=116.56 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=75.2
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+++|..++|||||+.+|...... . .+..+. |.. ...+. ++...+.++||||+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~----------~~~pt~------g~~----~~~i~-----~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-E----------SVVPTT------GFN----SVAIP-----TQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-c----------cccccC------Ccc----eEEEe-----eCCeEEEEEECCCCc
Confidence 789999999999999999743210 0 010000 110 11121 256789999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHH--HcCCCEEEEEEcccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAI--QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~--~~~ip~ilviNKiD~~~ 277 (989)
+|.......++.||++|+|+|+.+..... ....+..+. ..++|+++|+||+|+..
T Consensus 56 ~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 56 NLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 99998899999999999999998754222 222233332 25789999999999863
No 199
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.14 E-value=2.6e-10 Score=115.39 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=76.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|.+++|||||+++|+...-... + ...++.......+.. .+....++++||||
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~--------~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g 61 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-----------S--------KSTIGVEFATRSIQI---DGKTIKAQIWDTAG 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-----------C--------CCccceEEEEEEEEE---CCEEEEEEEEeCCC
Confidence 4699999999999999999964321100 0 011111111122222 23446789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++|+|+|+.+....+... .+..+.+ .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 9999888889999999999999998654333222 2232222 3589999999999863
No 200
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.14 E-value=3.1e-10 Score=114.65 Aligned_cols=116 Identities=21% Similarity=0.263 Sum_probs=76.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|........ ..|.- ..|..+... .+.+. .+....+.++||||+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~---------~~~~~------t~~~~~~~~--~~~~~--~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP---------KNYLM------TTGCDFVVK--EVPVD--TDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC---------ccCCC------ceEEEEEEE--EEEeC--CCCEEEEEEEECCCH
Confidence 599999999999999999974321111 00000 111111111 11111 235678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~--~~ip~ilviNKiD~~ 276 (989)
..|...+...++.+|++++|+|..+....... ..+..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 63 ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99988888999999999999999865332222 22233332 358999999999986
No 201
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.14 E-value=2.5e-10 Score=117.19 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=77.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+.+++... ... . +..+........+ .+ ++..+.++|+||||.
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~--f~~--~-------~~~t~~~~~~~~~---------~~---~~~~~~l~i~Dt~G~ 60 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHS--FPD--Y-------HDPTIEDAYKQQA---------RI---DNEPALLDILDTAGQ 60 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCC--C-------cCCcccceEEEEE---------EE---CCEEEEEEEEeCCCc
Confidence 59999999999999999997432 110 0 0000000001111 11 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH----HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~----~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++|+|+|+.+....+...-| +.+. ..++|+++|+||+|+..
T Consensus 61 ~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 99999889999999999999999987655544322 2222 24689999999999863
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.13 E-value=2.6e-10 Score=116.19 Aligned_cols=113 Identities=17% Similarity=0.269 Sum_probs=75.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|.+|+|||||+++|+...- . ..+..+. + ......+.+ ++....+.++||||+
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~---------~~~~~t~------~---~~~~~~~~~---~~~~~~~~i~Dt~G~ 59 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--I---------ESYDPTI------E---DSYRKQVEI---DGRQCDLEILDTAGT 59 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C---------cccCCcc------h---heEEEEEEE---CCEEEEEEEEeCCCc
Confidence 499999999999999999964321 1 0000000 0 000011112 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-----HHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-----IRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-----l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++|+|+|+......+...- ++.....++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 60 EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 9999999999999999999999887543332222 2222234789999999999863
No 203
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.12 E-value=3.4e-10 Score=117.99 Aligned_cols=111 Identities=18% Similarity=0.343 Sum_probs=74.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+++|..|+|||||+++|+... .. .... .+..+. ..+.+ .+ ++....++|+||||+.
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~--f~---~~~~--~t~~~~----~~~~~---------~~---~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNH--FV---ETYD--PTIEDS----YRKQV---------VV---DGQPCMLEVLDTAGQE 58 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CC---ccCC--CchHhh----EEEEE---------EE---CCEEEEEEEEECCCch
Confidence 8999999999999999997432 11 0000 000010 01111 11 2244568999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH------cCCCEEEEEEccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ------ERLPIVVVVNKVDRL 276 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~------~~ip~ilviNKiD~~ 276 (989)
+|.......++.+|++|+|+|+........ ...+..+.. .++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 999988899999999999999987543332 222232321 467999999999986
No 204
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.12 E-value=3.9e-10 Score=115.95 Aligned_cols=119 Identities=22% Similarity=0.242 Sum_probs=77.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec-------CCCCceE
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED-------SNSKSYL 212 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~-------~~~~~~~ 212 (989)
..+|+++|..++|||||+++|..... . ..+..+ -+..... ..+.+.. ..+....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~--~---------~~~~~t------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 64 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF--N---------PKFITT------VGIDFRE--KRVVYNSSGPGGTLGRGQRIH 64 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--C---------ccCCCc------cceEEEE--EEEEEcCccccccccCCCEEE
Confidence 45699999999999999999964321 1 000000 0111111 1111110 1134577
Q ss_pred EEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH----cCCCEEEEEEcccccc
Q 001965 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 213 inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+.|+||||+..|.......++.+|++|+|+|+.+.-..+...-| ..+.. .+.|+++|.||+|+..
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 99999999999999999999999999999999875433332222 22222 3679999999999863
No 205
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.12 E-value=3.8e-10 Score=114.59 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=75.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++|+...- . ..+..+ -|+.... .++.. +++...+.++||||+
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~--~---------~~~~~t------~~~~~~~--~~~~~---~~~~~~~~l~Dt~g~ 60 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSF--T---------SAFVST------VGIDFKV--KTVFR---NDKRVKLQIWDTAGQ 60 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C---------CCCCCc------eeeEEEE--EEEEE---CCEEEEEEEEECCCh
Confidence 699999999999999999974321 0 001000 1111111 11111 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++++|+|+.+...... ...++.+.. ...|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 61 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 9999989999999999999999986433222 222233322 3579999999999863
No 206
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.12 E-value=4.2e-10 Score=113.62 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=74.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+.+++... ... .+..+.. +.. . ..+.. ++....+.|+||||+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~--~~~---------~~~~t~~-~~~----~----~~~~~---~~~~~~l~i~Dt~G~ 59 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGT--FIE---------KYDPTIE-DFY----R----KEIEV---DSSPSVLEILDTAGT 59 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC---------CCCCchh-heE----E----EEEEE---CCEEEEEEEEECCCc
Confidence 59999999999999999987432 110 0000000 000 0 01111 224456889999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 60 EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999988889999999999999987543222 222223322 478999999999985
No 207
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.12 E-value=5.5e-10 Score=128.80 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=73.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+-.|+|+|.+|+|||||+++|......+. ..+. .|.......+.+. ....|.|+|||
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs----~~p~---------------TT~~p~~Giv~~~----~~~~i~~vDtP 215 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVA----DYPF---------------TTLVPNLGVVRVD----DERSFVVADIP 215 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCccccc----CCCC---------------CccCcEEEEEEeC----CCcEEEEEeCC
Confidence 34699999999999999999964332111 1111 1111111112221 23459999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCC----CcccchHHHHHHHHH-----cCCCEEEEEEccccc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAE----GVMVNTERAIRHAIQ-----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~e----gv~~qt~~~l~~~~~-----~~ip~ilviNKiD~~ 276 (989)
|... +...+.+.+..+|++++|||+.. ....+...+++.+.. .+.|.++|+||+|+.
T Consensus 216 Gi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 216 GLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 9864 44566788999999999999872 222233444455444 257999999999986
No 208
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.12 E-value=2.8e-10 Score=113.10 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=74.0
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+|+|+.|+|||||+++|....-.. ++.+ ..+... ..+.. ....+.++||||+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~--------------~~~~---t~~~~~----~~~~~-----~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE--------------DTIP---TVGFNM----RKVTK-----GNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc--------------CccC---CCCcce----EEEEE-----CCEEEEEEECCCCH
Confidence 7999999999999999996432110 0000 001111 11111 34679999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
.|.......++.+|++++|+|+..... .+....+..+. ..++|+++|+||+|...
T Consensus 56 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 56 RFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred hHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 999999999999999999999986432 22223333332 24789999999999863
No 209
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.11 E-value=1.3e-10 Score=132.41 Aligned_cols=116 Identities=23% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.....|+|+|++|+|||||+++|.... .+. ....+ ...|. ....+.+. .+..+.|+|
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~-~~v---~~~~~--tT~d~-------------~~~~i~~~----~~~~i~l~D 243 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD-VYA---ADQLF--ATLDP-------------TTRRLDLP----DGGEVLLTD 243 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc-eee---ccCCc--cccCC-------------EEEEEEeC----CCceEEEEe
Confidence 445679999999999999999997543 211 11111 11121 11122221 235789999
Q ss_pred CCCcc-cchH-------HHHHHhhhcCeEEEEeecCCCcccchH----HHHHHHHHcCCCEEEEEEccccc
Q 001965 218 SPGHV-NFSD-------EMTAALRLADGAVLIVDAAEGVMVNTE----RAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~-df~~-------ev~~alr~aD~ailVVDa~egv~~qt~----~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|||+. +... .+...++.||++|+|+|+++....... .+++.+...++|+++|+||+|+.
T Consensus 244 T~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 244 TVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred cCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 99983 2111 233457889999999999976543322 23333333478999999999986
No 210
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.11 E-value=4.3e-10 Score=112.50 Aligned_cols=113 Identities=23% Similarity=0.356 Sum_probs=75.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|+.|+|||||+++|+.... .. .+..+.. +.. ...+.+ .+..+.++++||||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~----------~~~~~~~-~~~--------~~~~~~---~~~~~~~~l~D~~g~ 57 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VE----------EYDPTIE-DSY--------RKTIVV---DGETYTLDILDTAGQ 57 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Cc----------CcCCChh-HeE--------EEEEEE---CCEEEEEEEEECCCh
Confidence 489999999999999999975431 11 0001100 000 011111 223567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCccc-chHHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMV-NTERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~-qt~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
.++.......++.+|++++|+|....... .....+..... .++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 58 EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 99999999999999999999998864321 12233333322 3689999999999874
No 211
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.11 E-value=3.5e-10 Score=118.05 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=74.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++|........ .+..+. +.+.... .+.+ ++....++|+||||+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~----------~~~~t~------~~~~~~~--~~~~---~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG----------NFIATV------GIDFRNK--VVTV---DGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc----------CcCCcc------cceeEEE--EEEE---CCEEEEEEEEeCCCc
Confidence 589999999999999999964321110 000000 0111111 1111 234567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH---HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI---QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~---~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+........ ...+..+. ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 61 ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 9998888889999999999999987533221 22222332 2367999999999986
No 212
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.10 E-value=8.3e-10 Score=124.81 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=71.8
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
.+-.|+|+|.+|+|||||+++|......+. ++.. .|.......+.+. ....+.|+||
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------~y~f------TT~~p~ig~v~~~----~~~~~~i~D~ 212 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------DYPF------TTLVPNLGVVRVD----DGRSFVIADI 212 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCcccc-------------CCCC------CccCCEEEEEEeC----CceEEEEEeC
Confidence 356799999999999999999964322111 1000 0111111112221 2367999999
Q ss_pred CCccc-------chHHHHHHhhhcCeEEEEeecCCC---cc-cchHHHHHHHHH-----cCCCEEEEEEccccc
Q 001965 219 PGHVN-------FSDEMTAALRLADGAVLIVDAAEG---VM-VNTERAIRHAIQ-----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~d-------f~~ev~~alr~aD~ailVVDa~eg---v~-~qt~~~l~~~~~-----~~ip~ilviNKiD~~ 276 (989)
||+.+ +.....+.+..||++|+|||+... .. .+...+.+.+.. .+.|++||+||+|+.
T Consensus 213 PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 213 PGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred CCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 99863 334556677789999999999864 11 112222233322 367999999999986
No 213
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.10 E-value=3.7e-10 Score=115.22 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=76.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+-.+|+|+|+.|+|||||+++|..... . .+. ...|+++. .+.+ .+..++++|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~--~----------~~~------~t~g~~~~----~i~~-----~~~~~~~~D 64 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI--S----------HIT------PTQGFNIK----TVQS-----DGFKLNVWD 64 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC--c----------ccC------CCCCcceE----EEEE-----CCEEEEEEE
Confidence 3455699999999999999999964211 0 000 01122221 1122 356789999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHH----HHHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIR----HAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~----~~~~~~ip~ilviNKiD~~~ 277 (989)
|||+..|...+...++.+|++++|+|+.+... ......+. .....++|+++++||+|+..
T Consensus 65 ~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 65 IGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 99999998888889999999999999986321 11222222 22345789999999999863
No 214
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.10 E-value=3.1e-10 Score=115.96 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=73.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|.... .. . +.. ..|..+ ..+.+ ....++++||||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~---~-------~~~------T~~~~~----~~~~~-----~~~~i~l~Dt~G~ 53 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FM---Q-------PIP------TIGFNV----ETVEY-----KNLKFTIWDVGGK 53 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CC---C-------cCC------cCceeE----EEEEE-----CCEEEEEEECCCC
Confidence 38899999999999999996431 11 0 000 011111 11222 5678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCccc-chHHHHHHHH----HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMV-NTERAIRHAI----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~-qt~~~l~~~~----~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+.+.-.. .....+..+. ..+.|++||+||+|+.
T Consensus 54 ~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 54 HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 99988888899999999999999864211 1122223232 2347999999999985
No 215
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.09 E-value=2.6e-10 Score=116.48 Aligned_cols=112 Identities=16% Similarity=0.269 Sum_probs=74.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+++|+.... . ..++.+...... ..+.+ ++..+.++++||||+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~---------~~~~~t~~~~~~---------~~~~~---~~~~~~~~i~Dt~G~ 58 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--P---------EEYVPTVFDHYA---------VSVTV---GGKQYLLGLYDTAGQ 58 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C---------CCCCCceeeeeE---------EEEEE---CCEEEEEEEEeCCCc
Confidence 599999999999999999975321 1 000110000000 01111 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHH--HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAI--QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~--~~~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|..+.-..+.. ..+..+. ..++|+++++||+|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 59 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred ccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 99988777888999999999999876443322 1222222 3578999999999985
No 216
>PLN03110 Rab GTPase; Provisional
Probab=99.09 E-value=5.9e-10 Score=118.88 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=79.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
++...+|+++|+.++|||||+.+|+....... + ...+.+......+.+ ++....++|+
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~-----------~--------~~t~g~~~~~~~v~~---~~~~~~l~l~ 66 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE-----------S--------KSTIGVEFATRTLQV---EGKTVKAQIW 66 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------C--------CCceeEEEEEEEEEE---CCEEEEEEEE
Confidence 34456899999999999999999964321100 0 011111111122222 2345679999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~ 276 (989)
||||+..|.......++.+|++|+|+|..+....+... .+..+.. .++|+++|.||+|+.
T Consensus 67 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred ECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 99999999998899999999999999998754433322 2233332 468999999999975
No 217
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.09 E-value=9.5e-10 Score=124.45 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=74.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+..|+|+|.+|+|||||+++|......+. ++. +.|+....-.+.+. +...+.++|||
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va-------------~yp------fTT~~p~~G~v~~~----~~~~~~i~D~P 214 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIA-------------DYP------FTTLHPNLGVVRVD----DYKSFVIADIP 214 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccC-------------CCC------CceeCceEEEEEeC----CCcEEEEEeCC
Confidence 55799999999999999999964321111 110 11222222222221 34569999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH-----cCCCEEEEEEcccccc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ-----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~-----~~ip~ilviNKiD~~~ 277 (989)
|..+ +.....+.+..||++|+|||+.+.-..+. +.+...+.. .++|+++|+||+|+..
T Consensus 215 Gli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 215 GLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 9853 44566677788999999999985432222 223333332 3679999999999863
No 218
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.09 E-value=5.7e-10 Score=114.32 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=74.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|..++|||||+.+++...- . ..|..+. +.... ...+.. ++....++|+||||+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~---------~~~~~t~------~~~~~--~~~~~~---~~~~~~l~i~Dt~G~ 59 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--D---------KNYKATI------GVDFE--MERFEI---LGVPFSLQLWDTAGQ 59 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C---------CCCCCce------eeEEE--EEEEEE---CCEEEEEEEEeCCCh
Confidence 489999999999999999975321 1 0111110 01111 111222 234577999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHHc----CCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQE----RLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~~----~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|+.......... .+....+. ..|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 60 ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 999998999999999999999997643222222 22233232 24689999999975
No 219
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.09 E-value=4.2e-10 Score=113.16 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=73.3
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+++|..|+|||||+++|....- . ... . ..+.++. .+.+ ...+.++++||||+.
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~--~---~~~-------~------t~~~~~~----~~~~----~~~~~l~i~D~~G~~ 55 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAEL--V---TTI-------P------TVGFNVE----MLQL----EKHLSLTVWDVGGQE 55 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc--c---ccc-------C------ccCcceE----EEEe----CCceEEEEEECCCCH
Confidence 88999999999999999964321 1 000 0 0111111 1111 134679999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHH----HcCCCEEEEEEccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAI----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~----~~~ip~ilviNKiD~~ 276 (989)
.|.......++.+|++|+|+|+.+..... ....+.... ..++|+++|+||+|+.
T Consensus 56 ~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 56 KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred hHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 99888888899999999999998764211 112222221 2578999999999985
No 220
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.08 E-value=4.9e-10 Score=114.55 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=74.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.++|||||+.+|.... .. ... .+ -|.++. .+.. .+..++++||||
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~--~~---~~~-------~t------~g~~~~----~~~~-----~~~~~~l~Dt~G 62 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ--SV---TTI-------PT------VGFNVE----TVTY-----KNVKFNVWDVGG 62 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC--Cc---ccc-------CC------cccceE----EEEE-----CCEEEEEEECCC
Confidence 469999999999999999995321 11 000 00 011111 1111 457799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHHHHH----HcCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIRHAI----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~~~~----~~~ip~ilviNKiD~~ 276 (989)
+..|.......++.||++|+|+|+.+... ......+.... ..++|++||.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 63 QDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred CHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 99998888888999999999999987432 12223333332 2357999999999975
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.08 E-value=1.6e-09 Score=111.39 Aligned_cols=114 Identities=19% Similarity=0.298 Sum_probs=82.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...-||++|++|+|||||+|+|..+.. +.+. +..+ |.|..... |.+ .+ .+.|+|-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArt-SktP---------------GrTq~iNf--f~~-----~~-~~~lVDl 77 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKN-LART-SKTP---------------GRTQLINF--FEV-----DD-ELRLVDL 77 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcc-eeec-CCCC---------------CccceeEE--EEe-----cC-cEEEEeC
Confidence 345699999999999999999975432 1111 1222 23333222 222 11 2789999
Q ss_pred CCcc----------cchHHHHHHhh---hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 219 PGHV----------NFSDEMTAALR---LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~----------df~~ev~~alr---~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||+- .+...+...++ ...+++++||+.++......++++.+...++|+++++||+|++.
T Consensus 78 PGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 78 PGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK 149 (200)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 9973 23344445553 35799999999999999999999999999999999999999984
No 222
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.08 E-value=5e-10 Score=113.67 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=74.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++|+...-. . . +..+.. ......+.+ .+..+.+.++||||+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~---~-------~~~~~~---------~~~~~~~~~---~~~~~~l~~~D~~g~ 58 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-T---E-------YVPTVF---------DNYSATVTV---DGKQVNLGLWDTAGQ 58 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-C---C-------CCCcee---------eeeEEEEEE---CCEEEEEEEEeCCCc
Confidence 5899999999999999999753210 0 0 000000 000111111 235567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch--HHHHHHHHH--cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT--ERAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt--~~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++++|+|+.+....+. ...+..... .++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 59 EEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRD 118 (171)
T ss_pred ccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhh
Confidence 9887766677889999999999987433222 122233322 3589999999999874
No 223
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.08 E-value=4.1e-10 Score=114.74 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=68.3
Q ss_pred EEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCC-ceEEEEeeCCCccc
Q 001965 145 LVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSK-SYLCNIMDSPGHVN 223 (989)
Q Consensus 145 IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~-~~~inlIDTPGh~d 223 (989)
|+|+.|+|||||+++|........ . ..+.|+......+.+ + ++.++|+||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~---~----------------~~~~t~~~~~~~~~~-----~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA---N----------------YPFTTLEPNLGVVEV-----PDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc---C----------------CCceeecCcceEEEc-----CCCCeEEEEeccccch
Confidence 589999999999999965321000 0 011122222112222 3 56799999999843
Q ss_pred -------chHHHHHHhhhcCeEEEEeecCCCc------cc-chHHHHHHHH----------HcCCCEEEEEEcccccc
Q 001965 224 -------FSDEMTAALRLADGAVLIVDAAEGV------MV-NTERAIRHAI----------QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 224 -------f~~ev~~alr~aD~ailVVDa~egv------~~-qt~~~l~~~~----------~~~ip~ilviNKiD~~~ 277 (989)
+.....+.++.+|++++|+|+.... .. ....++..+. ..++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 57 GASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred hhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2334566788899999999998762 11 1112222222 14689999999999973
No 224
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.07 E-value=4.5e-10 Score=114.69 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=73.9
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+|+|..|+|||||+++|+...- . ..+..+....... .+.+ +++.+.+.++||||+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~---------~~~~~~~~~~~~~---------~~~~---~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--P---------EDYVPTVFENYSA---------DVEV---DGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--C---------CCCCCcEEeeeeE---------EEEE---CCEEEEEEEEECCCCc
Confidence 58999999999999999975321 1 0111111000011 1111 2355678999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHH--cCCCEEEEEEcccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
.|.......++.+|++|+|+|+...-..+.. ..+..+.. .++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 58 DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred ccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 9988777888999999999999865332221 12233322 3789999999999863
No 225
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.07 E-value=6.9e-10 Score=118.63 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=77.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|..|+|||||+.+++.... . ..+.. .-|+++. ...+.. +++...++|+||||
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f--~---------~~~~~------tig~~~~--~~~~~~---~~~~~~l~i~Dt~G 71 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEF--E---------KKYEP------TIGVEVH--PLDFFT---NCGKIRFYCWDTAG 71 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCC--C---------CccCC------ccceeEE--EEEEEE---CCeEEEEEEEECCC
Confidence 4699999999999999999864321 1 00000 1111211 112222 22457899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHH--HcCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAI--QERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~--~~~ip~ilviNKiD~~ 276 (989)
+.+|.......++.+|++|+|+|.......+...-|. .+. ..++|++||.||+|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred chhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 9999887778899999999999999865544433332 222 2468999999999985
No 226
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.07 E-value=7.8e-10 Score=114.58 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=74.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|+...- . ..+..+. +.... ..+.. .+++...+.|+||||+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~--~---------~~~~~t~------~~~~~---~~i~~--~~~~~~~l~i~Dt~G~ 59 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF--P---------EEYVPTV------FENYV---TNIQG--PNGKIIELALWDTAGQ 59 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC--C---------CCCCCee------eeeeE---EEEEe--cCCcEEEEEEEECCCc
Confidence 599999999999999999974321 1 0000000 00000 00111 1134567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHH-HH--HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRH-AI--QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~-~~--~~~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|+.+....+... .|.. .. ..++|+++|+||.|+.
T Consensus 60 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 60 EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 999888878899999999999998754433321 2322 22 2468999999999986
No 227
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.06 E-value=7.2e-10 Score=114.17 Aligned_cols=113 Identities=12% Similarity=0.202 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|..++|||||+.+++... .. ..|..+. +.... ..+.. +++.+.++|+||||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~---------~~~~pt~------~~~~~---~~~~~---~~~~~~l~i~Dt~G 58 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FP---------SEYVPTV------FDNYA---VTVMI---GGEPYTLGLFDTAG 58 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CC---------CCCCCce------eeeeE---EEEEE---CCEEEEEEEEECCC
Confidence 359999999999999999997432 11 0011110 00010 11112 23557899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHH-HHHH--cCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIR-HAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~-~~~~--~~ip~ilviNKiD~~ 276 (989)
+..|.......++.+|++|+|+|+......... ..|. .+.. .++|+|||.||+|+.
T Consensus 59 ~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 59 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred ccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 999988777889999999999999876544333 2232 2322 368999999999975
No 228
>PRK11058 GTPase HflX; Provisional
Probab=99.06 E-value=5.2e-10 Score=130.41 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=72.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
.+..|+|+|.+|+|||||+|+|........ ...+ .|+......+.+. ....+.|+||
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~----~~~~---------------tTld~~~~~i~l~----~~~~~~l~DT 252 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAA----DQLF---------------ATLDPTLRRIDVA----DVGETVLADT 252 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeec----cCCC---------------CCcCCceEEEEeC----CCCeEEEEec
Confidence 345799999999999999999965332111 0111 1111111122221 2236789999
Q ss_pred CCcccc--------hHHHHHHhhhcCeEEEEeecCCCcccchH----HHHHHHHHcCCCEEEEEEccccc
Q 001965 219 PGHVNF--------SDEMTAALRLADGAVLIVDAAEGVMVNTE----RAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df--------~~ev~~alr~aD~ailVVDa~egv~~qt~----~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
||+... ...+...++.||++|+|+|+++....... .+++.+...++|+++|+||+|+.
T Consensus 253 aG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 253 VGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 998542 11234556889999999999986533322 33444444578999999999986
No 229
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.06 E-value=8.7e-10 Score=111.57 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=72.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+.+|.... .. . +..+ -|..+. .+.. ....++|+||||+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~--~~---~-------~~pt------~g~~~~----~~~~-----~~~~~~l~D~~G~ 54 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGE--IV---T-------TIPT------IGFNVE----TVEY-----KNISFTVWDVGGQ 54 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--Cc---c-------cCCC------CCcceE----EEEE-----CCEEEEEEECCCC
Confidence 49999999999999999985321 11 0 0000 011111 1111 4567999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHHHHHH----cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~~~~~----~~ip~ilviNKiD~~ 276 (989)
..|.......++.||++|+|+|+.+-.. .+....++.+.. .+.|++|++||+|+.
T Consensus 55 ~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 9998888888999999999999986321 112222333322 357999999999985
No 230
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.04 E-value=1.9e-09 Score=113.18 Aligned_cols=114 Identities=19% Similarity=0.229 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+||+++|++|+|||||+|+|+........ . ..++.|.........+ .+..+++|||||
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~--~---------------~~~~~T~~~~~~~~~~-----~~~~i~viDTPG 58 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK--L---------------SASSVTKTCQKESAVW-----DGRRVNVIDTPG 58 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc--c---------------CCCCcccccceeeEEE-----CCeEEEEEECcC
Confidence 57999999999999999999865442221 0 0122233322233333 567899999999
Q ss_pred cccch-------HHHHHHh----hhcCeEEEEeecCCCcccchHHHHHHHHHc-C----CCEEEEEEcccccc
Q 001965 221 HVNFS-------DEMTAAL----RLADGAVLIVDAAEGVMVNTERAIRHAIQE-R----LPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~-------~ev~~al----r~aD~ailVVDa~egv~~qt~~~l~~~~~~-~----ip~ilviNKiD~~~ 277 (989)
..++. .++.+.+ ...|++|+|+|+.. .......+++.+.+. + .++|+++||.|.+.
T Consensus 59 ~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 59 LFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred CCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 87753 2333333 34699999999987 777777777777543 2 48999999999874
No 231
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.04 E-value=1.7e-09 Score=112.94 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=79.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+.+.+|+++|..++|||||+.++..... . ..+.. .-+...... ++.. ++..+.++|+|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~--~---------~~~~~------t~~~~~~~~--~i~~---~~~~~~l~iwD 61 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGST--E---------SPYGY------NMGIDYKTT--TILL---DGRRVKLQLWD 61 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--C---------CCCCC------cceeEEEEE--EEEE---CCEEEEEEEEe
Confidence 3456799999999999999999964211 1 00000 011112111 1222 33567899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHHH--cCCCEEEEEEccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~~--~~ip~ilviNKiD~~ 276 (989)
|||+.+|.......++.+|++|||+|.....+.....- +..+.. .++|+|||.||+|+.
T Consensus 62 t~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 62 TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 99999999888888999999999999987554333332 233322 467999999999985
No 232
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.04 E-value=1.3e-09 Score=116.09 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=74.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|+.... . ..| ...+++......+.+. ++....++|+||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--~---------~~~--------~~T~~~d~~~~~i~~~--~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--G---------KSY--------KQTIGLDFFSKRVTLP--GNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--C---------CCC--------CCceeEEEEEEEEEeC--CCCEEEEEEEECCCc
Confidence 589999999999999999964321 1 000 0111111111112221 124578999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH------cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ------ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~------~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+......... ..+..+.+ .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 99988888999999999999999865333222 22233322 245789999999986
No 233
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.03 E-value=1e-09 Score=115.55 Aligned_cols=109 Identities=21% Similarity=0.321 Sum_probs=76.0
Q ss_pred EcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccch
Q 001965 146 VGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFS 225 (989)
Q Consensus 146 iGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~ 225 (989)
+|..++|||||+.+++... .. ..|.. .-|+.... ..+.+ +++...++|+||||+..|.
T Consensus 1 vG~~~vGKTsLi~r~~~~~--f~---------~~~~~------Tig~~~~~--~~~~~---~~~~~~l~iwDt~G~e~~~ 58 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE--FE---------KKYVA------TLGVEVHP--LVFHT---NRGPIRFNVWDTAGQEKFG 58 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC--CC---------CCCCC------ceeEEEEE--EEEEE---CCEEEEEEEEECCCchhhh
Confidence 5999999999999997321 11 00000 01122211 12222 3356789999999999999
Q ss_pred HHHHHHhhhcCeEEEEeecCCCcccchHHHHHH-HHH--cCCCEEEEEEccccc
Q 001965 226 DEMTAALRLADGAVLIVDAAEGVMVNTERAIRH-AIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 226 ~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~-~~~--~~ip~ilviNKiD~~ 276 (989)
......++.+|++|+|+|++...+.+....|.. +.+ .++|++||.||+|+.
T Consensus 59 ~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 59 GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999999999998776554444443 333 478999999999985
No 234
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.03 E-value=1.4e-09 Score=113.26 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=75.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||||+++|+...... ..|..+ .|.+.... .+.+ ++....++++||||.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~----------~~~~~t------~~~~~~~~--~~~~---~~~~~~l~i~D~~G~ 60 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV----------GPYQNT------IGAAFVAK--RMVV---GERVVTLGIWDTAGS 60 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC----------cCcccc------eeeEEEEE--EEEE---CCEEEEEEEEECCCc
Confidence 59999999999999999997432110 001111 11111111 1112 335567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~--~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+.+...... ...++.+.. .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 61 ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 9888777778889999999999987543322 222333332 268999999999975
No 235
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.03 E-value=6.7e-10 Score=108.15 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=77.0
Q ss_pred EEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccc
Q 001965 145 LVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNF 224 (989)
Q Consensus 145 IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df 224 (989)
|+|+.|+|||||+++|........ ....+. .+ .....+.. ......++++||||+.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-----~~~~t~-~~-------------~~~~~~~~---~~~~~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-----EYETTI-ID-------------FYSKTIEV---DGKKVKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-----ccccch-hh-------------eeeEEEEE---CCEEEEEEEEecCChHHH
Confidence 589999999999999975433100 000000 00 01111111 123567999999999999
Q ss_pred hHHHHHHhhhcCeEEEEeecCCCcccchHHHH-----HHHHHcCCCEEEEEEcccccc
Q 001965 225 SDEMTAALRLADGAVLIVDAAEGVMVNTERAI-----RHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 225 ~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-----~~~~~~~ip~ilviNKiD~~~ 277 (989)
.......++.+|++++|+|+..+........+ ......++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 59 RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 88888999999999999999987765555443 333456789999999999874
No 236
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.03 E-value=8.6e-10 Score=114.95 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=75.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
|+|+++|..|+|||||+.+|+...- . ..+..+........ +.. +++...++|+||||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~--~---------~~~~~t~~~~~~~~---------i~~---~~~~~~l~i~Dt~G 57 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF--P---------QVYEPTVFENYVHD---------IFV---DGLHIELSLWDTAG 57 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--C---------CccCCcceeeeEEE---------EEE---CCEEEEEEEEECCC
Confidence 5799999999999999999964221 1 00101100000000 111 23456799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH--HHHHHHH--cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER--AIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~--~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++|+|+|...-...+... .+..+.. .++|+++|.||+|+..
T Consensus 58 ~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 58 QEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE 118 (189)
T ss_pred ChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 9998777677789999999999988754444322 2333332 3689999999999863
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.02 E-value=3e-09 Score=117.56 Aligned_cols=123 Identities=20% Similarity=0.319 Sum_probs=79.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||+++|+.|+|||||+++|+....... .+.. +.......+.+++......+.. ++....+++|||||.
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~-~~~~--------~~~~~~~~~T~~i~~~~~~i~~---~g~~~~l~iiDTpGf 73 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPS-DYPP--------DPAEEHIDKTVEIKSSKAEIEE---NGVKLKLTVIDTPGF 73 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccc-cCCC--------CccccccCCceEEEEEEEEEEE---CCEEEEEEEEecCCc
Confidence 799999999999999999975432211 0000 0001112233334333333333 234467999999998
Q ss_pred ccchH---------------------HHHHHhh-------hcCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEEEc
Q 001965 222 VNFSD---------------------EMTAALR-------LADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 222 ~df~~---------------------ev~~alr-------~aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilviNK 272 (989)
.++.+ +.....| .+|++++++++. .++......+++.+.. ++|+|+|+||
T Consensus 74 gd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK 152 (276)
T cd01850 74 GDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAK 152 (276)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEEC
Confidence 76543 1111222 368899999987 4777777888888864 8999999999
Q ss_pred ccccc
Q 001965 273 VDRLI 277 (989)
Q Consensus 273 iD~~~ 277 (989)
+|++.
T Consensus 153 ~D~l~ 157 (276)
T cd01850 153 ADTLT 157 (276)
T ss_pred CCcCC
Confidence 99974
No 238
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.02 E-value=1.5e-09 Score=111.45 Aligned_cols=112 Identities=24% Similarity=0.353 Sum_probs=68.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+.|.|+|+.|+|||+|...|.+..... +++ |+... ..+.. ...+...+.+||+||
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~-----------T~t-----------S~e~n-~~~~~--~~~~~~~~~lvD~PG 58 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP-----------TVT-----------SMENN-IAYNV--NNSKGKKLRLVDIPG 58 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS--------------B--------------SSEE-EECCG--SSTCGTCECEEEETT
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC-----------eec-----------cccCC-ceEEe--ecCCCCEEEEEECCC
Confidence 579999999999999999997652211 110 11100 11111 122445689999999
Q ss_pred cccchHHHHHH---hhhcCeEEEEeecCCCcccchHHHHH----HH-----HHcCCCEEEEEEccccccc
Q 001965 221 HVNFSDEMTAA---LRLADGAVLIVDAAEGVMVNTERAIR----HA-----IQERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 221 h~df~~ev~~a---lr~aD~ailVVDa~egv~~qt~~~l~----~~-----~~~~ip~ilviNKiD~~~~ 278 (989)
|..+....... +..+-++|+|||++. ...+-..+.+ .+ ...++|++|+.||.|...+
T Consensus 59 H~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 59 HPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp -HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred cHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99998887776 889999999999974 2211122222 11 1356799999999999854
No 239
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.1e-10 Score=129.86 Aligned_cols=132 Identities=28% Similarity=0.352 Sum_probs=107.1
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED 205 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 205 (989)
...+||+++||+++||||+.. +.++.++. +|+..+...+.+|....|++|+++|..+...+..
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t-- 79 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 79 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc--
Confidence 445699999999999999986 43444432 4555666677899999999999887665554433
Q ss_pred CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC-------cccchHHHHHHHHHcCC-CEEEEEEcccccc
Q 001965 206 SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-------VMVNTERAIRHAIQERL-PIVVVVNKVDRLI 277 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg-------v~~qt~~~l~~~~~~~i-p~ilviNKiD~~~ 277 (989)
..+.+++||.|||.+|...+..+.+.||+|+++|.+.-| ...||+++..++...++ ++++.+||||..-
T Consensus 80 ---~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 80 ---SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred ---eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 678899999999999999999999999999999999332 25799999888888876 8899999999873
No 240
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.01 E-value=3.6e-09 Score=124.30 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=71.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+..|+|+|.+|+|||||+++|......+. |+ .+.|+......+.+ .+..|.|+|||
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIa-------------dy------pfTTl~P~lGvv~~-----~~~~f~laDtP 214 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIA-------------DY------PFTTLVPNLGVVQA-----GDTRFTVADVP 214 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcccc-------------cc------CcccccceEEEEEE-----CCeEEEEEECC
Confidence 56799999999999999999964322111 11 11222222222333 45679999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCC---ccc--chHH----HHHHH----------HHcCCCEEEEEEcc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEG---VMV--NTER----AIRHA----------IQERLPIVVVVNKV 273 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~eg---v~~--qt~~----~l~~~----------~~~~ip~ilviNKi 273 (989)
|... ...+..+.+..||++|+|||+..- -.+ .... +.++. ...+.|+|||+||+
T Consensus 215 Gliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKi 294 (500)
T PRK12296 215 GLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKI 294 (500)
T ss_pred CCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECc
Confidence 9753 223456677889999999999741 111 1111 22221 12467999999999
Q ss_pred ccc
Q 001965 274 DRL 276 (989)
Q Consensus 274 D~~ 276 (989)
|+.
T Consensus 295 DL~ 297 (500)
T PRK12296 295 DVP 297 (500)
T ss_pred cch
Confidence 986
No 241
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.01 E-value=1.5e-09 Score=112.40 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|..++|||||+.+|.... .. . +. ...|..+. .+.+ ++..++|+||||
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~--~~---~-------~~------pt~g~~~~----~~~~-----~~~~~~i~D~~G 70 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGE--IV---T-------TI------PTIGFNVE----TVEY-----KNISFTVWDVGG 70 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCC--Cc---c-------cc------CCcceeEE----EEEE-----CCEEEEEEECCC
Confidence 569999999999999999985311 11 0 00 01112111 1222 457799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++|+|+|+++.-... ....+.... ..++|++||+||+|+..
T Consensus 71 q~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 9999888888999999999999998643221 122222221 13689999999999863
No 242
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.01 E-value=2.7e-09 Score=123.91 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=72.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+.-|+++|.+|+|||||+++|......+. ++ ...|+......+.+. .+..+.|+|||
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------~y------pfTTl~PnlG~v~~~----~~~~~~laD~P 214 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------NY------HFTTLVPNLGVVETD----DGRSFVMADIP 214 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------cC------CcceeceEEEEEEEe----CCceEEEEECC
Confidence 44699999999999999999964332111 11 011222222222231 25679999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCC--cc--cchHHHHHHHHH-----cCCCEEEEEEccccc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEG--VM--VNTERAIRHAIQ-----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~eg--v~--~qt~~~l~~~~~-----~~ip~ilviNKiD~~ 276 (989)
|... +.....+.+..||++|+|||++.. .. .....+.+.+.. .++|++||+||+|+.
T Consensus 215 Gliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 215 GLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 9854 334456667789999999999743 11 122333334433 367999999999963
No 243
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.01 E-value=1.5e-09 Score=112.18 Aligned_cols=112 Identities=13% Similarity=0.247 Sum_probs=75.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+.+++...- . ..|..+......+ .+.+ +++...++|+||||+
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f--~---------~~~~~t~~~~~~~---------~~~~---~~~~~~l~iwDt~G~ 59 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY--P---------ETYVPTVFENYTA---------SFEI---DEQRIELSLWDTSGS 59 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--C---------CCcCCceEEEEEE---------EEEE---CCEEEEEEEEECCCc
Confidence 599999999999999999974321 1 0111111111111 1111 335577999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHH-HHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAI-RHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l-~~~~~--~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|.+...+... ..-| ..+.+ .++|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 60 PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 9998878888999999999999987654443 1223 22322 367999999999985
No 244
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=2.3e-09 Score=111.39 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=75.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+++|+...- . ..+. ...|...... .+.+ +++.+.+.++||||+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~--~---------~~~~------~t~~~~~~~~--~~~~---~~~~~~~~i~Dt~g~ 59 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEF--S---------ESTK------STIGVDFKIK--TVYI---ENKIIKLQIWDTNGQ 59 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--C---------CCCC------CceeeEEEEE--EEEE---CCEEEEEEEEECCCc
Confidence 599999999999999999963221 1 0000 0111111111 1222 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH---cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~---~~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|+...-.......| ..+.. .++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 60 ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 99999999999999999999999875432222222 22222 357999999999986
No 245
>PLN03108 Rab family protein; Provisional
Probab=99.01 E-value=2.2e-09 Score=113.92 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=77.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+|+|+.++|||||+++|+...-... ... .-+.+.... .+.+ ++....++++||
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~-------~~~----------ti~~~~~~~--~i~~---~~~~i~l~l~Dt 62 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------HDL----------TIGVEFGAR--MITI---DNKPIKLQIWDT 62 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC-------CCC----------CccceEEEE--EEEE---CCEEEEEEEEeC
Confidence 456799999999999999999964321110 000 001111111 1112 224456899999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH---HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~---~~~ip~ilviNKiD~~~ 277 (989)
||+..|.......++.+|++|+|+|+......+...-| ..+. ..++|++++.||+|+..
T Consensus 63 ~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 99999998888999999999999999875433332222 2222 23689999999999863
No 246
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.00 E-value=2e-09 Score=115.03 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=74.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|..++|||||+.+|+...- . . +.. |+........+ ..+.++|+||||+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--~---~-------~~~----------Tig~~~~~~~~-----~~~~l~iwDt~G~ 54 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--K---D-------TVS----------TVGGAFYLKQW-----GPYNISIWDTAGR 54 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--C---C-------CCC----------ccceEEEEEEe-----eEEEEEEEeCCCc
Confidence 589999999999999999974321 1 0 000 11111111111 3567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
..|.......++.+|++|+|+|+.+........ .|..+.+ .++|+|||.||+|+..
T Consensus 55 e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 55 EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999988888999999999999999754333322 2333322 3579999999999863
No 247
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.00 E-value=2.1e-09 Score=111.64 Aligned_cols=114 Identities=13% Similarity=0.230 Sum_probs=76.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
-.+|+++|..++|||||+.+++...- . ..|..+....... .+.. +++...+.|+||+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~---------~~~~pT~~~~~~~---------~~~~---~~~~~~l~iwDta 61 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--P---------ENYVPTVFENYTA---------SFEI---DTQRIELSLWDTS 61 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--C---------CccCCceeeeeEE---------EEEE---CCEEEEEEEEECC
Confidence 34699999999999999999974321 1 0011110000001 1111 3355779999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHH-HHHHH--cCCCEEEEEEccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAI-RHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l-~~~~~--~~ip~ilviNKiD~~ 276 (989)
|...|.......++.+|++|||+|.......... ..| ..+.+ .+.|++||.||+|+.
T Consensus 62 G~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 62 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred CchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 9999988888889999999999999876544432 223 23322 367999999999974
No 248
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.00 E-value=2.1e-09 Score=110.60 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
..|+++|..++|||||+.+|.... .. ++.+ .-|..+ ..+.+ +...+.|+||||
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~--~~-------------~~~~---t~~~~~----~~~~~-----~~~~l~l~D~~G 66 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGE--SV-------------TTIP---TIGFNV----ETVTY-----KNISFTVWDVGG 66 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CC-------------CcCC---ccccce----EEEEE-----CCEEEEEEECCC
Confidence 459999999999999999995311 10 0000 011111 11112 457799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHHHHHH----cCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~~~~~----~~ip~ilviNKiD~~ 276 (989)
+..|.......++.||++|+|+|+++.-. ....+.+..+.. .++|++||+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 67 QDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred ChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 99999888888999999999999986321 222333443322 357999999999985
No 249
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.00 E-value=1.7e-09 Score=114.87 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=75.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|..++|||||+++|+...- .. .. + ..+.+......+.+ ..+..+.++++||||
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~--~~---~~-------~-------~ti~~d~~~~~i~~--~~~~~~~l~i~Dt~G 61 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF--AE---VS-------D-------PTVGVDFFSRLIEI--EPGVRIKLQLWDTAG 61 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC---CC-------C-------ceeceEEEEEEEEE--CCCCEEEEEEEeCCc
Confidence 4699999999999999999974321 10 00 0 01111111111111 123456799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH----cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++|+|+|+.+....... ..++.+.+ ..+|++|+.||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 62 QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred chhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 999988888899999999999999875322221 22222222 3467899999999863
No 250
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.99 E-value=1.9e-09 Score=111.31 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=76.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.++|||+|+.+++... .. ..|..+. +.... ..+.. +++...++|+||+|+
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~--f~---------~~~~~Ti------~~~~~---~~~~~---~~~~v~l~i~Dt~G~ 59 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNK--FP---------TDYIPTV------FDNFS---ANVSV---DGNTVNLGLWDTAGQ 59 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CC---------CCCCCcc------eeeeE---EEEEE---CCEEEEEEEEECCCC
Confidence 59999999999999999997421 11 0011110 00110 01111 345678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHH--HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAI--QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~--~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|||+|...--..+.. ..++.+. ..++|++||.||+|+.
T Consensus 60 ~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 60 EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 99999888899999999999999875544332 2333333 2468999999999985
No 251
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.99 E-value=2e-09 Score=117.06 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=74.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++++... .. . .|..+..+-....++ + +++.+.++|+||+|+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~---~------~y~pTi~d~~~k~~~---------i---~~~~~~l~I~Dt~G~ 58 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FE---E------QYTPTIEDFHRKLYS---------I---RGEVYQLDILDTSGN 58 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CC---C------CCCCChhHhEEEEEE---------E---CCEEEEEEEEECCCC
Confidence 59999999999999999997422 11 0 011111000011111 1 335578999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH------------cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ------------ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~------------~~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|+.+....+. ..+++.+.. .++|+|+|+||+|+.
T Consensus 59 ~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 59 HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 9998877778899999999999987543222 222233321 367999999999986
No 252
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.99 E-value=2.3e-09 Score=112.04 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=76.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+.+++... .. ..|..+. +.... ..+. .+++.+.++|+||||+
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~--f~---------~~~~~t~------~~~~~---~~~~---~~~~~~~l~i~Dt~G~ 61 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNA--FP---------KEYIPTV------FDNYS---AQTA---VDGRTVSLNLWDTAGQ 61 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CC---------cCCCCce------EeeeE---EEEE---ECCEEEEEEEEECCCc
Confidence 69999999999999999997432 11 0010100 00000 0011 1345678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHH-HH--HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRH-AI--QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~-~~--~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|+..-.+..... .|.. +. ..++|++||.||.|+.
T Consensus 62 e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 62 EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 999988888899999999999998755443332 2322 22 2468999999999985
No 253
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.99 E-value=1.5e-09 Score=110.91 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=72.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+|+|+.++|||||+.+|+.....- .+..+.... .. ..+.+ +++...+.|+||||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-----------~~~~t~~~~------~~---~~~~~---~~~~~~l~i~Dt~G 58 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-----------VYVPTVFEN------YV---ADIEV---DGKQVELALWDTAG 58 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-----------CCCCccccc------eE---EEEEE---CCEEEEEEEEeCCC
Confidence 479999999999999999997532110 000000000 00 01111 23456789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHH-HHHHH--cCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAI-RHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l-~~~~~--~~ip~ilviNKiD~~ 276 (989)
+.++.......++.+|++++|+|+..--..... ..| ..+.. .++|+++++||+|+.
T Consensus 59 ~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 59 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred chhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 998877666788999999999998753221111 112 22222 478999999999976
No 254
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.99 E-value=2.2e-09 Score=110.41 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=74.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+.+++... ... .|..+... .. ...+.. +++...++|+||||+
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~--f~~---------~~~~t~~~------~~---~~~~~~---~~~~~~l~i~Dt~G~ 59 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA--FPG---------EYIPTVFD------NY---SANVMV---DGKPVNLGLWDTAGQ 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---------cCCCccee------ee---EEEEEE---CCEEEEEEEEECCCc
Confidence 59999999999999999997421 110 00000000 00 001111 335567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHH-HHHH--HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAI-RHAI--QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l-~~~~--~~~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|+...-+.+.. ..| ..+. ..++|++||.||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 60 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 99988888889999999999999875443332 123 2222 2368999999999985
No 255
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.98 E-value=4.5e-09 Score=105.49 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=73.3
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+++|+.|+|||||++.|........ ..+ ..+.|..... +.+ ...+.++||||+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~-----~~~------------~~~~t~~~~~--~~~------~~~~~~~D~~g~~ 56 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR-----TSK------------TPGKTQLINF--FNV------NDKFRLVDLPGYG 56 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee-----ecC------------CCCcceeEEE--EEc------cCeEEEecCCCcc
Confidence 89999999999999999973222111 000 0111111111 111 1268999999975
Q ss_pred cc----------hHHHHHHhh---hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 223 NF----------SDEMTAALR---LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df----------~~ev~~alr---~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.. ...+...++ .++++++|+|.....+.....+++.+...+.|+++++||+|...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 57 YAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred ccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 42 222223333 46789999999988777777888888888999999999999863
No 256
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.7e-09 Score=108.20 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=88.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
..-.|.++|..|+|||.|+-++.. |+..+.+...|.++....++.+ +++..++.++||
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~-------------------~~f~e~~~sTIGVDf~~rt~e~---~gk~iKlQIWDT 65 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKD-------------------DTFTESYISTIGVDFKIRTVEL---DGKTIKLQIWDT 65 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhcc-------------------CCcchhhcceeeeEEEEEEeee---cceEEEEEeeec
Confidence 344689999999999999988831 2223334555666666666666 557789999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHH---HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~---~~~ip~ilviNKiD~~~ 277 (989)
+|+.+|...+....|.|+|+|+|.|...--+-+....|. .+. ..++|.++|.||+|+..
T Consensus 66 AGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 66 AGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred cccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 999999999999999999999999999755444443332 222 34679999999999974
No 257
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.98 E-value=2.6e-09 Score=114.22 Aligned_cols=112 Identities=16% Similarity=0.266 Sum_probs=76.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+.+|....- . ..|..+....... .+.+ +++...++|+||+|+
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f--~---------~~y~pTi~~~~~~---------~~~~---~~~~v~L~iwDt~G~ 59 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY--P---------GSYVPTVFENYTA---------SFEI---DKRRIELNMWDTSGS 59 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--C---------CccCCccccceEE---------EEEE---CCEEEEEEEEeCCCc
Confidence 599999999999999999964321 1 0111111101111 1111 335677999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHH---HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAI---QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~---~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|+|..+.-..... ..|.... ..++|+|||.||+|+.
T Consensus 60 e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 60 SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 99998888899999999999999976433332 2333221 2467999999999985
No 258
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.98 E-value=4e-09 Score=111.23 Aligned_cols=118 Identities=15% Similarity=0.262 Sum_probs=78.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+.+++...- . . .+ ...-|.++....+.+.-...+++.+.++|+||+|+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f--~------~---~~------~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~ 64 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV--L------G---RP------SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGS 64 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--C------C---CC------CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCc
Confidence 489999999999999999974321 1 0 00 00111222222121110011235678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHHH----------------------cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAIQ----------------------ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~~----------------------~~ip~ilviNKiD~~ 276 (989)
.+|.......++.+|++|+|+|.+..-......-|. .+.. .++|++||.||+|+.
T Consensus 65 e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 65 ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999888888999999999999999875444333332 2221 368999999999986
No 259
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.98 E-value=1.8e-09 Score=115.83 Aligned_cols=116 Identities=26% Similarity=0.360 Sum_probs=80.8
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.++-+||++|.+|+|||||+|.++...-... ++-+++. +.+-..+ + ..+..++.|.|
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~v---------S~K~~TT---r~~ilgi------~-----ts~eTQlvf~D 126 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV---------SRKVHTT---RHRILGI------I-----TSGETQLVFYD 126 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccc---------cccccce---eeeeeEE------E-----ecCceEEEEec
Confidence 4566899999999999999999986533222 1111111 1111111 1 11678899999
Q ss_pred CCCccc------------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH-cCCCEEEEEEccccc
Q 001965 218 SPGHVN------------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ-ERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~d------------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~-~~ip~ilviNKiD~~ 276 (989)
|||.+. |......|+..||++++|+|+...-..-..++++.+.. .++|-|+|+||+|.+
T Consensus 127 TPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 127 TPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred CCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 999652 44456789999999999999997444445566666654 578999999999987
No 260
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.98 E-value=2e-09 Score=111.69 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=73.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|..++|||||+.++... ... . +. ...|..+. .+.. .+..++++||||
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~--~~~---~-------~~------~T~~~~~~----~~~~-----~~~~~~l~D~~G 70 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLG--EVV---T-------TI------PTIGFNVE----TVEY-----KNLKFTMWDVGG 70 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Ccc---c-------cC------CccccceE----EEEE-----CCEEEEEEECCC
Confidence 35999999999999999998521 111 0 00 00111111 1122 457799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHHHHHH----cCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~~~~~----~~ip~ilviNKiD~~ 276 (989)
+..|.......++.+|++|+|+|+.+--. ......+..... .++|++||+||.|+.
T Consensus 71 ~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 71 QDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred CHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 99998888899999999999999975321 111222332222 357999999999975
No 261
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.97 E-value=7.1e-10 Score=106.05 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=70.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+|+|..|+|||||+++|+....... ........ .++....... ......+.++|++|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~---------~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~d~~g~ 60 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDN---------SVPEETSE------ITIGVDVIVV-----DGDRQSLQFWDFGGQ 60 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------SSTT------SCEEEEEEEE-----TTEEEEEEEEEESSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCccc---------ccccccCC------CcEEEEEEEe-----cCCceEEEEEecCcc
Confidence 389999999999999999986543200 00001111 1111111111 123345889999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHH---HH--cCCCEEEEEEccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHA---IQ--ERLPIVVVVNKVD 274 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~---~~--~~ip~ilviNKiD 274 (989)
..+.......+..+|++|+|+|+.+.-..+- ..+++.+ .. .++|++||.||.|
T Consensus 61 ~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 61 EEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 8887766667999999999999997543222 2332222 22 3589999999998
No 262
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.96 E-value=2.6e-09 Score=109.27 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=75.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
++.+|+++|..|+|||||+.+++...-... . |..+. +...... .+.+ ++....++++||
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~---~-------~~~T~------~~~~~~~--~~~~---~~~~~~l~~~d~ 61 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLN---A-------YSPTI------KPRYAVN--TVEV---YGQEKYLILREV 61 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcc---c-------CCCcc------CcceEEE--EEEE---CCeEEEEEEEec
Confidence 467899999999999999999974321100 0 00000 0001101 1111 234466889999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH-HcCCCEEEEEEccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI-QERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~-~~~ip~ilviNKiD~~ 276 (989)
+|...|.......++.+|++|+|+|+.+.-.... ..+++... ..++|+++|+||+|+.
T Consensus 62 ~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 62 GEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 9999988777788899999999999977532221 13333332 2368999999999985
No 263
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.95 E-value=2.7e-09 Score=109.28 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=74.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+.+++... .. .... .+..|. . ...+.. ++....+.++||||+
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~---~~~~--~t~~~~-----------~--~~~~~~---~~~~~~~~i~Dt~G~ 58 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YP---TEYV--PTAFDN-----------F--SVVVLV---DGKPVRLQLCDTAGQ 58 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CC---CCCC--Cceeee-----------e--eEEEEE---CCEEEEEEEEECCCC
Confidence 48999999999999999986422 11 0000 000010 0 011111 224567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch--HHHHHHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT--ERAIRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt--~~~l~~~~~--~~ip~ilviNKiD~~ 276 (989)
..|......+++.+|++|+|+|+.+.-..+. ...+..+.. .++|++++.||+|+.
T Consensus 59 ~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 59 DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 9988877778899999999999987543332 233444433 368999999999985
No 264
>COG2262 HflX GTPases [General function prediction only]
Probab=98.95 E-value=1.7e-09 Score=121.16 Aligned_cols=118 Identities=20% Similarity=0.283 Sum_probs=78.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
...+..|+++|..|+|||||+|+|....... .+.-.. |...+.-.+.+. .+..+.|-
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~------~d~LFA-------------TLdpttR~~~l~----~g~~vlLt 245 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYV------ADQLFA-------------TLDPTTRRIELG----DGRKVLLT 245 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeec------cccccc-------------cccCceeEEEeC----CCceEEEe
Confidence 4578889999999999999999995322111 111122 223333333332 35779999
Q ss_pred eCCCccc--------chHHHHHHhhhcCeEEEEeecCCCc-ccchHHH---HHHHHHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVN--------FSDEMTAALRLADGAVLIVDAAEGV-MVNTERA---IRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~d--------f~~ev~~alr~aD~ailVVDa~egv-~~qt~~~---l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||-|+++ -...+......||..+.|||+++.- ..+-..+ +..+....+|+|+|.||+|++.
T Consensus 246 DTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 246 DTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred cCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 9999865 2234555667899999999999863 2333333 3333345679999999999984
No 265
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.93 E-value=7.8e-09 Score=109.96 Aligned_cols=114 Identities=23% Similarity=0.344 Sum_probs=77.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++++... .. ..|..+ -+..+. ...+.. +++...++++||||
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~--~~---------~~~~~t------~~~~~~--~~~~~~---~~~~i~i~~~Dt~g 67 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGE--FE---------KKYIPT------LGVEVH--PLKFYT---NCGPICFNVWDTAG 67 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CC---------CCCCCc------cceEEE--EEEEEE---CCeEEEEEEEECCC
Confidence 469999999999999998776322 11 011111 011111 111111 33567899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHH---HHcCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA---IQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~---~~~~ip~ilviNKiD~~ 276 (989)
+.+|.......++.+|++|+|+|..+..+.++...|..- ...++|++++.||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 68 QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred chhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 999988888888899999999999987665554433221 12578999999999975
No 266
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.93 E-value=6e-09 Score=112.13 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=76.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|..++|||+|+.+|+... .. ..|..+....... .+.. +++...++|+||+|.
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~--F~---------~~y~pTi~~~~~~---------~i~~---~~~~v~l~iwDTaG~ 71 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDC--YP---------ETYVPTVFENYTA---------GLET---EEQRVELSLWDTSGS 71 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CC---------CCcCCceeeeeEE---------EEEE---CCEEEEEEEEeCCCc
Confidence 58999999999999999996432 11 0011111000001 1111 345677999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHH-HHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAI-RHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l-~~~~~--~~ip~ilviNKiD~~ 276 (989)
..|.......++.||++|||+|+......+. ...| ..+.. .++|+|||.||+|+.
T Consensus 72 e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 72 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9998888889999999999999987655443 2223 33332 367999999999974
No 267
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.93 E-value=4.8e-09 Score=127.32 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=72.2
Q ss_pred cCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccchH
Q 001965 147 GHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSD 226 (989)
Q Consensus 147 Gh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ 226 (989)
|.+|+|||||+++|...... .. ...|+|+......+.+ +++.++++||||+.+|..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-------------v~------n~pG~Tv~~~~~~i~~-----~~~~i~lvDtPG~~~~~~ 56 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-------------VG------NWPGVTVEKKEGKLGF-----QGEDIEIVDLPGIYSLTT 56 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-------------ec------CCCCeEEEEEEEEEEE-----CCeEEEEEECCCccccCc
Confidence 78999999999999532210 00 1245666555444544 456799999999988754
Q ss_pred H-----HHH-H--hhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 227 E-----MTA-A--LRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 227 e-----v~~-a--lr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
. +.+ . .+.+|++++|+|+... ........++.+.++|+++|+||+|+.
T Consensus 57 ~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 57 FSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred cchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 2 222 1 2368999999999873 223444556667899999999999986
No 268
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.5e-09 Score=119.36 Aligned_cols=113 Identities=23% Similarity=0.302 Sum_probs=85.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|||+|++|+|||||+|+|......|. +..+|++| |.. + ..+.. +++.+.|+||+|
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIV---Spv~GTTR--Dai----e---------a~v~~-----~G~~v~L~DTAG 325 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIV---SPVPGTTR--DAI----E---------AQVTV-----NGVPVRLSDTAG 325 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEe---CCCCCcch--hhh----e---------eEeec-----CCeEEEEEeccc
Confidence 5799999999999999999999888887 55666555 322 1 12222 678899999999
Q ss_pred ccc-ch--------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcC------------CCEEEEEEccccc
Q 001965 221 HVN-FS--------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQER------------LPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~d-f~--------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~------------ip~ilviNKiD~~ 276 (989)
... -. .....+++.||.+++||||.++.+.+...+.+.+...+ -|+|+++||+|..
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 976 11 12346788999999999999988877777666665443 3677788888876
No 269
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.93 E-value=7.7e-09 Score=104.74 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=74.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+.+++... .. . .+ ...+........+.. ++....+.++||||.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~--~~------~---~~--------~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~ 59 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE--FH------S---SH--------ISTIGVDFKMKTIEV---DGIKVRIQIWDTAGQ 59 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CC------C---CC--------CCceeeEEEEEEEEE---CCEEEEEEEEeCCCc
Confidence 58999999999999999996321 11 0 00 000111111112222 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHH---HcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAI---QERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~---~~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++++|+|....-..+... .+..+. ..++|+++|.||.|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 60 ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999988889999999999999988643322222 122222 2367999999999985
No 270
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.92 E-value=5.3e-09 Score=108.51 Aligned_cols=112 Identities=20% Similarity=0.286 Sum_probs=73.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..++|||||+.+++...- . ..|..+ -|...... .+.. ++....+.++||+|+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~---------~~~~~T------~g~~~~~~--~i~~---~~~~~~l~iwDt~G~ 59 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--D---------EDYIQT------LGVNFMEK--TISI---RGTEITFSIWDLGGQ 59 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C---------CCCCCc------cceEEEEE--EEEE---CCEEEEEEEEeCCCc
Confidence 489999999999999999974321 1 001111 11111111 1112 234577999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++++|+|+.+-...... ..+..+.+ ..+| |+|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 60 REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 99998888899999999999999875433322 22233332 2345 7889999985
No 271
>PLN00023 GTP-binding protein; Provisional
Probab=98.91 E-value=8.3e-09 Score=114.60 Aligned_cols=120 Identities=15% Similarity=0.264 Sum_probs=77.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEe--------ecCCCCce
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVL--------EDSNSKSY 211 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~--------~~~~~~~~ 211 (989)
..+|+++|+.++|||||+.+|+...- . ..+ ...-|.++....+.+.- ....++.+
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F--~---------~~~------~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v 83 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSS--I---------ARP------PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDF 83 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCc--c---------ccc------CCceeeeEEEEEEEECCcccccccccccCCceE
Confidence 34699999999999999999974321 1 000 00112222211111110 00112457
Q ss_pred EEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHHc---------------CCCEEEEEEcccc
Q 001965 212 LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQE---------------RLPIVVVVNKVDR 275 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~~---------------~ip~ilviNKiD~ 275 (989)
.++|+||+|+..|.......++.+|++|+|+|++.--..... ..++.+... ++|++||.||+|+
T Consensus 84 ~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 84 FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred EEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 899999999999999888999999999999999874332222 222233321 4799999999998
Q ss_pred c
Q 001965 276 L 276 (989)
Q Consensus 276 ~ 276 (989)
.
T Consensus 164 ~ 164 (334)
T PLN00023 164 A 164 (334)
T ss_pred c
Confidence 5
No 272
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.90 E-value=1.4e-08 Score=109.50 Aligned_cols=81 Identities=27% Similarity=0.390 Sum_probs=54.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|.+|+|||||+++|......+ +.. . +.|+......+.+ ++..++++||||+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v---~~~-~---------------~tT~~~~~g~~~~-----~~~~i~l~DtpG~ 57 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV---AAY-E---------------FTTLTCVPGVLEY-----KGAKIQLLDLPGI 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc---cCC-C---------------CccccceEEEEEE-----CCeEEEEEECCCc
Confidence 48999999999999999996432111 000 0 0111111222223 4567999999998
Q ss_pred ccc-------hHHHHHHhhhcCeEEEEeecCC
Q 001965 222 VNF-------SDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 222 ~df-------~~ev~~alr~aD~ailVVDa~e 246 (989)
.+. ...+...++.+|++++|+|+..
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 58 IEGAADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred ccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 643 3456788999999999999865
No 273
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.87 E-value=1.3e-08 Score=106.96 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=70.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+++|+....... |... ++.. ..|..... +.. .....+.++||||.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~------~~~~------~~t~~~~~----~~~--~~~~~l~l~DtpG~ 62 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEE--GAAP------TGVV------ETTMKRTP----YPH--PKFPNVTLWDLPGI 62 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCC--Cccc------cCcc------ccccCcee----eec--CCCCCceEEeCCCC
Confidence 599999999999999999975322100 0100 0000 00111000 110 01235899999998
Q ss_pred ccchH---HHH--HHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSD---EMT--AALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~---ev~--~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.+... +.. ..+..+|++++|.| .........+++.+...+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 63 GSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 65322 222 22456788888754 45666667778888888999999999999964
No 274
>PRK09866 hypothetical protein; Provisional
Probab=98.85 E-value=3e-08 Score=117.03 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=57.6
Q ss_pred ceEEEEeeCCCccc-----chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcC--CCEEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVN-----FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQER--LPIVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~d-----f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~--ip~ilviNKiD~~ 276 (989)
...+.|+||||... +...+..++..+|.+++|||+..+.....+.+++.+.+.+ .|+++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 35789999999743 4556778999999999999999988888888888888777 4999999999985
No 275
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.83 E-value=2.3e-08 Score=107.12 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=69.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCcc-ceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRI-DEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~-~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+|+++|..|+|||||+++|+...-... .+.-+.. +-..+.+. + ++....++|+||||
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~----------~~~~t~~~~~~~~~i~---------~---~~~~~~l~i~Dt~G 59 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDH----------AYDASGDDDTYERTVS---------V---DGEESTLVVIDHWE 59 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCcc----------CcCCCccccceEEEEE---------E---CCEEEEEEEEeCCC
Confidence 599999999999999999963211000 0000000 00011111 1 22456799999999
Q ss_pred cccchHHHHHHhh-hcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALR-LADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr-~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+..+.. ...++ .+|++|+|+|+.+.-.... ..++..+.. .++|+|+|.||+|+..
T Consensus 60 ~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 60 QEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred cchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 984322 34556 8999999999997643322 223333333 4689999999999863
No 276
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.79 E-value=3.2e-08 Score=101.99 Aligned_cols=113 Identities=21% Similarity=0.316 Sum_probs=79.1
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+-.+|+++|..|+|||||+.+|.. +... +. . -|+......+.+ +++.++++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~-------------~~---~----pT~g~~~~~i~~-----~~~~~~~~d 64 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEIS-------------ET---I----PTIGFNIEEIKY-----KGYSLTIWD 64 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEE-------------EE---E----EESSEEEEEEEE-----TTEEEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--cccc-------------cc---C----cccccccceeee-----CcEEEEEEe
Confidence 4556799999999999999999952 1111 00 0 111122223333 678899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
.+|+..|.......++.+|++|+|||+.+.- .......+..+. ..++|++|++||.|+..
T Consensus 65 ~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 65 LGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp ESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred ccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC
Confidence 9999988888888899999999999999642 233343444432 23689999999999874
No 277
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.78 E-value=4e-08 Score=96.86 Aligned_cols=97 Identities=25% Similarity=0.323 Sum_probs=70.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+.|.++|.+++|||||+.+|........ +.-++ .+ .=++|||||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~---------------------KTq~i-------~~--------~~~~IDTPG 45 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK---------------------KTQAI-------EY--------YDNTIDTPG 45 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC---------------------cccee-------Ee--------cccEEECCh
Confidence 4689999999999999999954221100 00011 11 124799999
Q ss_pred ----cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 ----HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 ----h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+..|..........||.+++|.||.+....-.-. .+...+.|+|=||||+|+.
T Consensus 46 EyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 46 EYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASMFNKPVIGVITKIDLP 102 (143)
T ss_pred hheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcccCCCEEEEEECccCc
Confidence 4668888888889999999999999875443332 2344578999999999997
No 278
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.77 E-value=6.6e-08 Score=97.35 Aligned_cols=114 Identities=23% Similarity=0.305 Sum_probs=76.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|..++|||||+.+|....- . ..+..+. |.... ...+.. ++..+.+.|+||+|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~--~---------~~~~~t~------~~~~~--~~~~~~---~~~~~~l~i~D~~g~ 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF--P---------ENYIPTI------GIDSY--SKEVSI---DGKPVNLEIWDTSGQ 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST--T---------SSSETTS------SEEEE--EEEEEE---TTEEEEEEEEEETTS
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc--c---------ccccccc------ccccc--cccccc---ccccccccccccccc
Confidence 489999999999999999975321 1 0111111 11111 111111 246677999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHH-HH---HcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRH-AI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~-~~---~~~ip~ilviNKiD~~~ 277 (989)
..|.......++.+|++|+|.|....-......-|.. +. ....|++|+.||.|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 59 ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9998888889999999999999987544333333322 22 12479999999999875
No 279
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=5e-08 Score=98.69 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=87.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+-+.-.|+++|..++|||||+.++++...... | ...|.|.--.-++.+ .+..+.+.||
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~-----------Y--------qATIGiDFlskt~~l---~d~~vrLQlW 76 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNT-----------Y--------QATIGIDFLSKTMYL---EDRTVRLQLW 76 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhccc-----------c--------cceeeeEEEEEEEEE---cCcEEEEEEE
Confidence 44445799999999999999999988654211 1 111222222223333 3467889999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCC-cccchHHHHHHHHHcC----CCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEG-VMVNTERAIRHAIQER----LPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~eg-v~~qt~~~l~~~~~~~----ip~ilviNKiD~~~ 277 (989)
||+|++.|...+.+.+|.+.+||+|.|..+- --.+|...++-+..++ +-++||.||-|+..
T Consensus 77 DTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 77 DTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred ecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 9999999999999999999999999998863 3456777777776553 34678899999984
No 280
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.77 E-value=7.5e-08 Score=102.93 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=101.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCccc-ccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMS-TFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~-~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
...-||-|.|..|+|||||+|+|........ ..|...+-.++ .+. .+....++|+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~----------------------~~~--~~~~~~l~lw 92 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR----------------------LRL--SYDGENLVLW 92 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh----------------------HHh--hccccceEEe
Confidence 4556888999999999999999985333221 11111110000 000 1133569999
Q ss_pred eCCCccc-------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcC--CCEEEEEEccccccc----cc-CC
Q 001965 217 DSPGHVN-------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQER--LPIVVVVNKVDRLIT----EL-KL 282 (989)
Q Consensus 217 DTPGh~d-------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~--ip~ilviNKiD~~~~----el-~l 282 (989)
||||..+ ........+...|.+++++++.+--....+..++...... .++++++|..|+... +. .-
T Consensus 93 DtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~ 172 (296)
T COG3596 93 DTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGH 172 (296)
T ss_pred cCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccC
Confidence 9999977 4455677888899999999999887778888888876543 599999999999743 11 11
Q ss_pred CchHHHH-HHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceee
Q 001965 283 PPKDAYH-KLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFT 334 (989)
Q Consensus 283 ~p~~~~~-~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ft 334 (989)
.|..+.. -+++-.+.+..++.. +.| |+|.|++.+|++.
T Consensus 173 ~p~~a~~qfi~~k~~~~~~~~q~----------V~p----V~~~~~r~~wgl~ 211 (296)
T COG3596 173 QPSPAIKQFIEEKAEALGRLFQE----------VKP----VVAVSGRLPWGLK 211 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhh----------cCC----eEEeccccCccHH
Confidence 2233222 123333333333322 234 7899999999853
No 281
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.77 E-value=2.7e-08 Score=108.05 Aligned_cols=84 Identities=26% Similarity=0.350 Sum_probs=61.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
.-.|+++|.+++|||||+++| |++-++.+.-.+ .|....+--+.+ ++..|.|+|+|
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~seva~y~F----------------TTl~~VPG~l~Y-----~ga~IQild~P 118 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSEVADYPF----------------TTLEPVPGMLEY-----KGAQIQLLDLP 118 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHH---hCCCccccccCc----------------eecccccceEee-----cCceEEEEcCc
Confidence 345999999999999999999 443332222111 134444444555 77889999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCC
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEG 247 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~eg 247 (989)
|... -..++.+.+|.||.+++|+|+.+.
T Consensus 119 gii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 119 GIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred ccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 9864 235788999999999999999864
No 282
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=6e-08 Score=99.93 Aligned_cols=119 Identities=22% Similarity=0.237 Sum_probs=85.3
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
....-.|.++|..++|||.|+.++...+-... |. +.-||-.+...+ .+ +++...+.+|
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-----------~~------sTiGIDFk~kti--~l---~g~~i~lQiW 66 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-----------FI------STIGIDFKIKTI--EL---DGKKIKLQIW 66 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCC-----------cc------ceEEEEEEEEEE--Ee---CCeEEEEEEE
Confidence 45566799999999999999999964332111 10 122333333333 33 4477789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHH----HHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
||.|+..|...+.+++|.|+|++||+|.....+..-..-|... ....+|++||.||+|...
T Consensus 67 DtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 67 DTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred EcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 9999999999999999999999999999876544333333322 334789999999999874
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.74 E-value=3.5e-07 Score=99.49 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=71.8
Q ss_pred hccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceE
Q 001965 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYL 212 (989)
Q Consensus 133 l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 212 (989)
+........||+++|++|+|||||+|+|+....... . +... .|.........+ .+..
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v---~---------~~~~------~T~~~~~~~~~~-----~g~~ 80 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAAT---S---------AFQS------ETLRVREVSGTV-----DGFK 80 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCccc---C---------CCCC------ceEEEEEEEEEE-----CCeE
Confidence 333344556899999999999999999986543221 0 0000 011111112222 4577
Q ss_pred EEEeeCCCcccchH------HH----HHHhh--hcCeEEEEeecCC-CcccchHHHHHHHHH-cC----CCEEEEEEccc
Q 001965 213 CNIMDSPGHVNFSD------EM----TAALR--LADGAVLIVDAAE-GVMVNTERAIRHAIQ-ER----LPIVVVVNKVD 274 (989)
Q Consensus 213 inlIDTPGh~df~~------ev----~~alr--~aD~ailVVDa~e-gv~~qt~~~l~~~~~-~~----ip~ilviNKiD 274 (989)
+++|||||..+... .+ .+.+. ..|++++|..... ........+++.+.. .+ .++++|+||+|
T Consensus 81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d 160 (249)
T cd01853 81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAA 160 (249)
T ss_pred EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence 99999999987631 11 12222 4577776654432 333444456665543 23 37999999999
Q ss_pred ccc
Q 001965 275 RLI 277 (989)
Q Consensus 275 ~~~ 277 (989)
..-
T Consensus 161 ~~~ 163 (249)
T cd01853 161 SSP 163 (249)
T ss_pred cCC
Confidence 974
No 284
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.73 E-value=4.7e-08 Score=101.69 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=69.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|..|+|||||+++|.... ... ... .+..+. .. . .+.+ ++....++++||||+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~--~~~----~~~-~t~~~~----------~~-~--~~~~---~~~~~~l~i~Dt~g~ 59 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGE--FPE----EYH-PTVFEN----------YV-T--DCRV---DGKPVQLALWDTAGQ 59 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc----ccC-Ccccce----------EE-E--EEEE---CCEEEEEEEEECCCC
Confidence 69999999999999999996321 110 000 000000 00 0 1111 223456889999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~--~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++|+|.|....-..+.. ..+..+.+ ..+|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 60 EEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred hhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 88765555577899999999998754332221 12222222 368999999999985
No 285
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.72 E-value=1.3e-08 Score=89.45 Aligned_cols=73 Identities=29% Similarity=0.459 Sum_probs=62.2
Q ss_pred eeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceee
Q 001965 506 FDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLC 582 (989)
Q Consensus 506 ~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~ 582 (989)
.++++||+||+|++||+|++++ +.+. .+....+|.+|+.+++....++..+.||+++.+.|+++++..|+|||
T Consensus 2 ~v~~grV~sG~l~~gd~v~~~~-~~~~---~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 2 RVATGRVYSGTLKKGDKVRVLP-NGTG---KKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEESEEETTEEEEEES-TTTT---EECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred EEEEEEEEEeEEcCCCEEEECc-cCCc---ceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 5899999999999999999977 4322 11245899999999999999999999999999999998555689986
No 286
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.72 E-value=6.7e-08 Score=102.64 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=78.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
..|+++|..|+|||||+++|....-... ....+...... ...+. ..+...+.++||+|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~-------------------~~~t~~~~~~~-~~~~~--~~~~~~~~~~Dt~g 63 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEG-------------------YPPTIGNLDPA-KTIEP--YRRNIKLQLWDTAG 63 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCccc-------------------CCCceeeeeEE-EEEEe--CCCEEEEEeecCCC
Confidence 5699999999999999999974322110 00011111000 11111 11256689999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCC--CcccchHHHHHHHHHc---CCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAE--GVMVNTERAIRHAIQE---RLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~e--gv~~qt~~~l~~~~~~---~ip~ilviNKiD~~~ 277 (989)
+.+|..-+....+.++++++|+|... .....++.....+... +.|++++.||+|+..
T Consensus 64 q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 64 QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 99999999999999999999999885 4344445555455443 589999999999984
No 287
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.71 E-value=3.9e-08 Score=96.03 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=81.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceee--eeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQE--RRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~--rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.-.|-++|..|+|||+|+-+++..+- .++.. -|+-.+...+.+ +++.+++.|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~f-------------------d~~~~~tIGvDFkvk~m~v-----dg~~~KlaiWD 66 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTF-------------------DDLHPTTIGVDFKVKVMQV-----DGKRLKLAIWD 66 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhccc-------------------CccCCceeeeeEEEEEEEE-----cCceEEEEEEe
Confidence 34689999999999999988864321 11222 233334333332 56888999999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHH-----HHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRH-----AIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~-----~~~~~ip~ilviNKiD~~~ 277 (989)
|+|+..|...+....|.|-|+|+|.|+..--+..-..+|.. +-..++-.++|.||+|+..
T Consensus 67 TAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 67 TAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred ccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 99999999999999999999999999986443333344432 2233556789999999863
No 288
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.70 E-value=8.3e-08 Score=103.89 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=74.0
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCce-EEEEee
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSY-LCNIMD 217 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~-~inlID 217 (989)
.|-+|+++|-+|+|||||+++|.... ++++.-.. .|++...-+..+ .++ .+.+-|
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK---pkVa~YaF----------------TTL~P~iG~v~y-----ddf~q~tVAD 250 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK---PKVAHYAF----------------TTLRPHIGTVNY-----DDFSQITVAD 250 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC---Ccccccce----------------eeeccccceeec-----cccceeEecc
Confidence 35679999999999999999995433 22222111 234433333333 233 399999
Q ss_pred CCCccc-------chHHHHHHhhhcCeEEEEeecCCC---cccc-hHHHHHHHHHc-----CCCEEEEEEccccc
Q 001965 218 SPGHVN-------FSDEMTAALRLADGAVLIVDAAEG---VMVN-TERAIRHAIQE-----RLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~d-------f~~ev~~alr~aD~ailVVDa~eg---v~~q-t~~~l~~~~~~-----~ip~ilviNKiD~~ 276 (989)
-||.+. .--...+-+..|++.++|||.+.+ --.+ ...++..+... ..|.++|+||||..
T Consensus 251 iPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 251 IPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred CccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 999764 233455666778999999999987 2222 23333333322 34999999999996
No 289
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.69 E-value=1.7e-07 Score=100.96 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=54.5
Q ss_pred eEEEEeeCCCcccc-------------hHHHHHHhh-hcCeEEEEeecCCCcccch-HHHHHHHHHcCCCEEEEEEcccc
Q 001965 211 YLCNIMDSPGHVNF-------------SDEMTAALR-LADGAVLIVDAAEGVMVNT-ERAIRHAIQERLPIVVVVNKVDR 275 (989)
Q Consensus 211 ~~inlIDTPGh~df-------------~~ev~~alr-~aD~ailVVDa~egv~~qt-~~~l~~~~~~~ip~ilviNKiD~ 275 (989)
..++||||||.... ...+..+++ ..+.+++|+|+..++..+. .++.+.+...+.|.++|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 56999999999632 123556777 4569999999999988877 58888888899999999999999
Q ss_pred cc
Q 001965 276 LI 277 (989)
Q Consensus 276 ~~ 277 (989)
+.
T Consensus 205 ~~ 206 (240)
T smart00053 205 MD 206 (240)
T ss_pred CC
Confidence 84
No 290
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.69 E-value=2.6e-08 Score=99.80 Aligned_cols=116 Identities=24% Similarity=0.276 Sum_probs=79.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
.-.|.|+|.+|||||+|++++++..-.. ....+-..|+. .+.+.+ +++...+.|+||+
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~------qykaTIgadFl----tKev~V------------d~~~vtlQiWDTA 66 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQ------QYKATIGADFL----TKEVQV------------DDRSVTLQIWDTA 66 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHH------Hhccccchhhe----eeEEEE------------cCeEEEEEEEecc
Confidence 3469999999999999999997542100 00001111211 111222 3456678899999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-----HHHHH---cCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-----RHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-----~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|+..|-..-.+-.|.||+++||.|....-......-| .++.- +.-|+||+.||+|...
T Consensus 67 GQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 67 GQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred cHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 9999999999999999999999998865444444444 34431 2349999999999864
No 291
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.68 E-value=1.2e-07 Score=96.02 Aligned_cols=106 Identities=13% Similarity=0.229 Sum_probs=68.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|..|+|||||+.+++... ... .+. ........ ++.+ +++.+.+.++||+|.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~---------~~~-~~~~~~~~---------~i~~---~~~~~~l~i~D~~g~ 57 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQ---------LES-PEGGRFKK---------EVLV---DGQSHLLLIRDEGGA 57 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCC---------CCC-CCccceEE---------EEEE---CCEEEEEEEEECCCC
Confidence 59999999999999999986421 110 000 00000001 1112 234567899999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~ 276 (989)
.+ ....+.+|++++|+|..+--..+. ...+..+.. .++|+++|.||+|+.
T Consensus 58 ~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 58 PD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred Cc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 75 245678999999999998665554 333344432 357999999999974
No 292
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.66 E-value=1.1e-07 Score=99.71 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHH-HHHHH--cCCCEEEEEEccccc
Q 001965 207 NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAI-RHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 207 ~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l-~~~~~--~~ip~ilviNKiD~~ 276 (989)
+++.+.++|+||+|..+. .....++.||++|+|+|..+....... ..| ..+.. .++|+++|.||+|+.
T Consensus 62 ~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 62 DGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 446788999999998753 233468899999999999876544333 223 22322 367999999999985
No 293
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.5e-07 Score=94.64 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=78.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-.+.|+|..|+|||.|+-++..+.-. +..+ -.-|+ .-....+. .+++..+++++||.|
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~-----~~hd------------~TiGv--efg~r~~~---id~k~IKlqiwDtaG 64 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQ-----PVHD------------LTIGV--EFGARMVT---IDGKQIKLQIWDTAG 64 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcc-----cccc------------ceeee--eeceeEEE---EcCceEEEEEEecCC
Confidence 35889999999999999887532211 1111 01111 11111111 255778899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH----HHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI----RHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l----~~~~~~~ip~ilviNKiD~~~ 277 (989)
|+.|.+-+.+..|.+-|||||.|...--+......| ++....++-++|+.||+|+..
T Consensus 65 qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 65 QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 999999999999999999999998864433332222 233346778999999999974
No 294
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.60 E-value=1.9e-07 Score=94.90 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=46.3
Q ss_pred eEEEEeeCCCcccch----HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHH-HcCCCEEEEEEcc
Q 001965 211 YLCNIMDSPGHVNFS----DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI-QERLPIVVVVNKV 273 (989)
Q Consensus 211 ~~inlIDTPGh~df~----~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~-~~~ip~ilviNKi 273 (989)
..+.||||||..+.. ..+...+..+|++|+|+++...........+.+.. ..+-.+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 458999999985522 44677889999999999999977766555555544 4455688888985
No 295
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=4.6e-07 Score=87.40 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=79.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEe--eeeEEEeecCCCCceEEEEee
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKA--VPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~--~~~~~~~~~~~~~~~~inlID 217 (989)
.-.|+++|..|+|||.|+.++- .|..+ +| .|.||.. -..++. .++...++.|+|
T Consensus 7 lfkivlvgnagvgktclvrrft--qglfp------pg-------------qgatigvdfmiktve---v~gekiklqiwd 62 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFT--QGLFP------PG-------------QGATIGVDFMIKTVE---VNGEKIKLQIWD 62 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhh--ccCCC------CC-------------CCceeeeeEEEEEEE---ECCeEEEEEEee
Confidence 3469999999999999999883 23222 11 1112221 112222 245678899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH----HHHHHHHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE----RAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~----~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|+|+..|.+-+.+..|.|+..|||.|.+........ +-+.+-...++--|+|.||+|+..
T Consensus 63 tagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 63 TAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred ccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 999999999999999999999999999875543332 222333445667799999999973
No 296
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.5e-07 Score=95.31 Aligned_cols=114 Identities=20% Similarity=0.296 Sum_probs=78.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|..++|||||+-+++... +. ++ .| -||..+..+-.+. ......++-|+||+|.
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~--F~-------------e~--~e----~TIGaaF~tktv~-~~~~~ikfeIWDTAGQ 64 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQ--FH-------------EN--IE----PTIGAAFLTKTVT-VDDNTIKFEIWDTAGQ 64 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCc--cc-------------cc--cc----cccccEEEEEEEE-eCCcEEEEEEEEcCCc
Confidence 68999999999999998886321 11 00 11 1333333333322 1234677889999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-C---EEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-P---IVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p---~ilviNKiD~~~ 277 (989)
.+|.+...-..|.|+.||+|.|+.+--..+...-|-.-.+.+. | +.||.||+|+..
T Consensus 65 ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 65 ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 9999999999999999999999997655555444433333333 3 456899999985
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.50 E-value=6.1e-07 Score=101.32 Aligned_cols=133 Identities=14% Similarity=0.269 Sum_probs=83.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeee---EEEEeee---eEEEeecCCCCceEEE
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERR---ISIKAVP---MSLVLEDSNSKSYLCN 214 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rg---iti~~~~---~~~~~~~~~~~~~~in 214 (989)
..|+++|++++|||||+++|....- ++.+.. .....|..|-.+... .| +|..... -.+.+.-.++-...+.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~V-lP~i~~-~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLV-LPNISN-EYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhc-cccccc-hhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 3599999999999999999986621 111110 001122222222221 12 1111111 0111222233456799
Q ss_pred EeeCCCccc-------------------------chHH----HHHHhh-hcCeEEEEe-ecC------CCcccchHHHHH
Q 001965 215 IMDSPGHVN-------------------------FSDE----MTAALR-LADGAVLIV-DAA------EGVMVNTERAIR 257 (989)
Q Consensus 215 lIDTPGh~d-------------------------f~~e----v~~alr-~aD~ailVV-Da~------egv~~qt~~~l~ 257 (989)
||||+|+.+ |..- +...+. .+|.+|+|. |++ ++.....++++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999754 1111 445667 899999999 886 666777889999
Q ss_pred HHHHcCCCEEEEEEccccc
Q 001965 258 HAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 258 ~~~~~~ip~ilviNKiD~~ 276 (989)
.+++.++|+++++||.|-.
T Consensus 175 eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHHhcCCCEEEEEECcCCC
Confidence 9999999999999999954
No 298
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.48 E-value=3.9e-07 Score=95.64 Aligned_cols=115 Identities=19% Similarity=0.287 Sum_probs=82.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
-.+|+++|..|+|||+|+-+++...- . ..|..+.++...+.++++ +....+.|+||+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~---------~~y~ptied~y~k~~~v~------------~~~~~l~ilDt~ 59 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--V---------EDYDPTIEDSYRKELTVD------------GEVCMLEILDTA 59 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--c---------cccCCCccccceEEEEEC------------CEEEEEEEEcCC
Confidence 35699999999999999988864321 1 113333344445555553 345567899999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHH----HHcCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
|..+|.......++.+||.++|.+..+--..+.. .++.++ ....+|+++|.||+|+..
T Consensus 60 g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 60 GQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred CcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 9999999999999999999999999875543332 233333 234579999999999974
No 299
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.48 E-value=5.8e-07 Score=106.98 Aligned_cols=109 Identities=24% Similarity=0.304 Sum_probs=76.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.||++|.+|+|||||.|+|. |.-.+.| + -.|+|+......+.+ +++.+.++|.||.
T Consensus 5 ~valvGNPNvGKTtlFN~LT---G~~q~Vg----------N------wpGvTVEkkeg~~~~-----~~~~i~ivDLPG~ 60 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALT---GANQKVG----------N------WPGVTVEKKEGKLKY-----KGHEIEIVDLPGT 60 (653)
T ss_pred eEEEecCCCccHHHHHHHHh---ccCceec----------C------CCCeeEEEEEEEEEe-----cCceEEEEeCCCc
Confidence 39999999999999999994 4322111 1 245666666556655 6778999999998
Q ss_pred ccch----HH-HH-HHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 222 VNFS----DE-MT-AALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~----~e-v~-~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
-.+. +| +. ..+. ..|++|-||||+.= .....+--|+.+.++|+|+++|++|..
T Consensus 61 YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 61 YSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 6653 22 22 2332 46999999999852 122233346678899999999999986
No 300
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.48 E-value=9.7e-07 Score=87.09 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=81.5
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|-|+|.-|+||||++++|+.... .......|..|+ ++.+ +.+.+|++|--|..
T Consensus 19 iLiLGLdNsGKTti~~kl~~~~~------------------~~i~pt~gf~Ik----tl~~-----~~~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 19 ILILGLDNSGKTTIVKKLLGEDT------------------DTISPTLGFQIK----TLEY-----KGYTLNIWDVGGQK 71 (185)
T ss_pred EEEEecCCCCchhHHHHhcCCCc------------------cccCCccceeeE----EEEe-----cceEEEEEEcCCcc
Confidence 88999999999999999964321 011122344443 3333 78999999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
.+..-.......+|+.|.|||.++-. +..+...++.+. -.+.|++++.||.|..+
T Consensus 72 ~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 72 TLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred hhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 99999999999999999999998744 344555555553 23569999999999873
No 301
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.47 E-value=9.2e-07 Score=85.42 Aligned_cols=113 Identities=21% Similarity=0.311 Sum_probs=79.2
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
.+|+|.+++|||+|+-++...+ .. ..|. -.|.+....-++.. ++....+.|+||+|..
T Consensus 11 llIigDsgVGKssLl~rF~ddt--Fs---------~sYi--------tTiGvDfkirTv~i---~G~~VkLqIwDtAGqE 68 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDT--FS---------GSYI--------TTIGVDFKIRTVDI---NGDRVKLQIWDTAGQE 68 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcc--cc---------cceE--------EEeeeeEEEEEeec---CCcEEEEEEeecccHH
Confidence 5699999999999998774321 11 1111 11122222222222 4677889999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc---CCCEEEEEEcccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE---RLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~---~ip~ilviNKiD~~~ 277 (989)
.|...+....|...|+++|.|+..|.......-|-+-.+. .+|-++|.||.|...
T Consensus 69 rFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 69 RFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred HHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 9999999999999999999999998765544333333333 458999999999874
No 302
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=4.9e-07 Score=92.93 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=81.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-.|+++|.+++|||-|+.++....-.+. ... .-|+.+... ++.. +++..+..|+||+|
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~-------Sks----------TIGvef~t~--t~~v---d~k~vkaqIWDTAG 72 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLE-------SKS----------TIGVEFATR--TVNV---DGKTVKAQIWDTAG 72 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcc-------ccc----------ceeEEEEee--ceee---cCcEEEEeeecccc
Confidence 3499999999999999999843221111 000 122222222 2222 45777889999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
+..|..-+.+..|.|-||+||.|.....+.+ ..+.++.++. .++++++|.||+|+..
T Consensus 73 QERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 73 QERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 9999988899999999999999998765543 3344455543 4689999999999874
No 303
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1e-06 Score=90.78 Aligned_cols=112 Identities=27% Similarity=0.350 Sum_probs=78.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+.|-++|..|+|||+|.-.|+..++. .++ .||..+...+.+ ++....|||-||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-----------~Tv-----------tSiepn~a~~r~-----gs~~~~LVD~PG 91 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR-----------GTV-----------TSIEPNEATYRL-----GSENVTLVDLPG 91 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc-----------Cee-----------eeeccceeeEee-----cCcceEEEeCCC
Confidence 56999999999999999988654321 111 244444444544 344488999999
Q ss_pred cccchHHHHHHhh---hcCeEEEEeecCCC---cccchHHHHHHHH-----HcCCCEEEEEEcccccccc
Q 001965 221 HVNFSDEMTAALR---LADGAVLIVDAAEG---VMVNTERAIRHAI-----QERLPIVVVVNKVDRLITE 279 (989)
Q Consensus 221 h~df~~ev~~alr---~aD~ailVVDa~eg---v~~qt~~~l~~~~-----~~~ip~ilviNKiD~~~~e 279 (989)
|..........+. .+-++|+|||+..- +....+.+...+. ..++|++++.||-|+.-+.
T Consensus 92 H~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 92 HSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred cHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 9998888877777 78999999998853 2222333333332 4467999999999998654
No 304
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=2.2e-06 Score=82.89 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=78.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.+.|+|..++|||+|+-+.+..+-.+ .|. ..-||-.+.. ++ +.+. +..++.++||.|.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~-----------afv------sTvGidFKvK--Tv-yr~~--kRiklQiwDTagq 80 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTS-----------AFV------STVGIDFKVK--TV-YRSD--KRIKLQIWDTAGQ 80 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccc-----------cee------eeeeeeEEEe--Ee-eecc--cEEEEEEEecccc
Confidence 47899999999999998876433211 110 1223333332 22 2222 4477999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH----HHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI----RHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l----~~~~~~~ip~ilviNKiD~~~ 277 (989)
+.+..-+.+..|.|+|.||+.|....-.....+-| +..-..+.|+|+|.||+|+..
T Consensus 81 EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 81 ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 99999999999999999999999865433332222 222345789999999999874
No 305
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.3e-06 Score=99.54 Aligned_cols=106 Identities=25% Similarity=0.418 Sum_probs=82.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
-||++|++|.|||||+.+|+.. |+.+.-.+...-||+.+ ++...++|+.||.
T Consensus 71 IvavvGPpGtGKsTLirSlVrr----------------~tk~ti~~i~GPiTvvs-----------gK~RRiTflEcp~- 122 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRR----------------FTKQTIDEIRGPITVVS-----------GKTRRITFLECPS- 122 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHH----------------HHHhhhhccCCceEEee-----------cceeEEEEEeChH-
Confidence 3789999999999999999743 22222223333345432 3778899999993
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEE-EEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVV-VVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~il-viNKiD~~~ 277 (989)
| ...++.....||.++|+||+.-|....|.+.+..+...++|.|+ |++.+|+..
T Consensus 123 -D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 123 -D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred -H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 3 45677788999999999999999999999999999999998766 778888863
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.40 E-value=2e-06 Score=97.01 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=89.3
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCc----ccc----cCCCCCCcceeccCccce---eeeeEEEEeeeeEEEee-
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHH----MST----FDPNSEKHTRYTDTRIDE---QERRISIKAVPMSLVLE- 204 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~----i~~----~g~~~~~~~~~~D~~~~E---~~rgiti~~~~~~~~~~- 204 (989)
......|+|.|.+|+|||||++.|+..... +.- ..+...++.-..|....+ ...+.-+.+......+.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 345567999999999999999998643211 100 000000111111211111 11122222222111111
Q ss_pred ----------cCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccc
Q 001965 205 ----------DSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 205 ----------~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD 274 (989)
-.+..++.+.||||+|... .++. ....||.+++|++...|-..|... . ....+.-++|+||+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k--~--gi~E~aDIiVVNKaD 205 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIK--K--GIMELADLIVINKAD 205 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHH--h--hhhhhhheEEeehhc
Confidence 0123468899999999884 3322 577899999998755554433321 0 011223489999999
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccc
Q 001965 275 RLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGW 331 (989)
Q Consensus 275 ~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~ 331 (989)
+.... . .+....+++..+....+. ...+. -.|++.||+.|-
T Consensus 206 l~~~~------~----a~~~~~el~~~L~l~~~~---~~~w~---~pVi~vSA~~g~ 246 (332)
T PRK09435 206 GDNKT------A----ARRAAAEYRSALRLLRPK---DPGWQ---PPVLTCSALEGE 246 (332)
T ss_pred ccchh------H----HHHHHHHHHHHHhccccc---ccCCC---CCEEEEECCCCC
Confidence 87421 1 234555666666532110 00111 247888988774
No 307
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.39 E-value=4.3e-06 Score=92.74 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=69.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|.+|+|||||+|+|+....... +.... + +......+..+ .++.+++|||
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~v---s~f~s----------~-----t~~~~~~~~~~-----~G~~l~VIDT 93 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATV---SAFQS----------E-----GLRPMMVSRTR-----AGFTLNIIDT 93 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc---cCCCC----------c-----ceeEEEEEEEE-----CCeEEEEEEC
Confidence 456899999999999999999985433221 00000 0 11111111112 5678999999
Q ss_pred CCcccch---HHHHHHhh------hcCeEEEEeecCC-CcccchHHHHHHHHHc-----CCCEEEEEEccccc
Q 001965 219 PGHVNFS---DEMTAALR------LADGAVLIVDAAE-GVMVNTERAIRHAIQE-----RLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df~---~ev~~alr------~aD~ailVVDa~e-gv~~qt~~~l~~~~~~-----~ip~ilviNKiD~~ 276 (989)
||..+.. .+....++ ..|++|+|..... ........+++.+... -.++||++++.|..
T Consensus 94 PGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 94 PGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 9988642 22333333 4788999954332 2343445555554321 23899999999976
No 308
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1.7e-06 Score=83.94 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=79.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.+.++|+.|+|||.|+.+++...-. |. ....-|+...+..+++ .++..++.|+||+|+
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfk---------------Dd--ssHTiGveFgSrIinV-----GgK~vKLQIWDTAGQ 68 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFK---------------DD--SSHTIGVEFGSRIVNV-----GGKTVKLQIWDTAGQ 68 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhc---------------cc--ccceeeeeecceeeee-----cCcEEEEEEeecccH
Confidence 4889999999999999999854210 10 0112333333333333 347788999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH----HHHHHcCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI----RHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l----~~~~~~~ip~ilviNKiD~~ 276 (989)
..|..-+....|.|-||+||.|+..--......-| +.+...++-+|++.||-|+.
T Consensus 69 ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 69 ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 99999999999999999999999865443333333 22233455678888999986
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.33 E-value=1.2e-06 Score=92.87 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=70.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcc-eeccCcccee--eeeEEEEeeeeEEE--------eec
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHT-RYTDTRIDEQ--ERRISIKAVPMSLV--------LED 205 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~-~~~D~~~~E~--~rgiti~~~~~~~~--------~~~ 205 (989)
+..++||+++|+.|+|||||+++|+...+...+.+ ...+.. .-.|....++ ...+.+....+... +..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~-v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIA-VIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEE-EEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 45799999999999999999999987643211100 000000 0112221111 01122222221110 000
Q ss_pred CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 206 SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
....+..+.||+|.|...... ......+..+.|+|+..+.... .+.....+.|.++++||+|+..
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccc
Confidence 111245788999999321111 1112356677899998764322 2233345668999999999973
No 310
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.30 E-value=5.4e-06 Score=88.99 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=68.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|.++|..++||||....+..... +..+++ . |.|++.....+.. .....++++|+||+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~---------p~dT~~-----L----~~T~~ve~~~v~~----~~~~~l~iwD~pGq 58 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS---------PRDTLR-----L----EPTIDVEKSHVRF----LSFLPLNIWDCPGQ 58 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS------------GGGGGG--------------SEEEEEEEC----TTSCEEEEEEE-SS
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC---------chhccc-----c----CCcCCceEEEEec----CCCcEEEEEEcCCc
Confidence 378999999999999998864322 111221 1 1222222222211 13457999999999
Q ss_pred ccchHH-----HHHHhhhcCeEEEEeecC-CCccc---chHHHHHHHHH--cCCCEEEEEEcccccc
Q 001965 222 VNFSDE-----MTAALRLADGAVLIVDAA-EGVMV---NTERAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~e-----v~~alr~aD~ailVVDa~-egv~~---qt~~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
.+|... ...-++.+++.|.|+|+. +.... .-...++.+.+ -++.+-+++.|||.+.
T Consensus 59 ~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 59 DDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp CSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred cccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 988876 466789999999999999 33221 12223334433 3568999999999974
No 311
>PRK13768 GTPase; Provisional
Probab=98.24 E-value=3.2e-06 Score=92.48 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=48.5
Q ss_pred eEEEEeeCCCcccchH---H---HHHHhhh--cCeEEEEeecCCCcccchHHHHHHHH-----HcCCCEEEEEEcccccc
Q 001965 211 YLCNIMDSPGHVNFSD---E---MTAALRL--ADGAVLIVDAAEGVMVNTERAIRHAI-----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 211 ~~inlIDTPGh~df~~---e---v~~alr~--aD~ailVVDa~egv~~qt~~~l~~~~-----~~~ip~ilviNKiD~~~ 277 (989)
..+.+|||||+.++.. . ..+.+.. ++++++|+|+..+....+.....++. ..++|+++|+||+|...
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3689999999877432 2 2233333 89999999999877766654443332 56889999999999984
No 312
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.22 E-value=1.3e-06 Score=84.48 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=75.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
+.++|-.++|||||++.+. +|.. .+++ -..+|..+. .....+..+-++|.||+.
T Consensus 23 l~lvGLq~sGKtt~Vn~ia--~g~~----------~edm-----iptvGfnmr---------k~tkgnvtiklwD~gGq~ 76 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIA--RGQY----------LEDM-----IPTVGFNMR---------KVTKGNVTIKLWDLGGQP 76 (186)
T ss_pred EEEEeeccCCcceEEEEEe--eccc----------hhhh-----cccccceeE---------EeccCceEEEEEecCCCc
Confidence 8899999999999998763 2211 1111 012222221 112245668899999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCC--cccchHHHHHHH---HHcCCCEEEEEEcccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEG--VMVNTERAIRHA---IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~eg--v~~qt~~~l~~~---~~~~ip~ilviNKiD~~~ 277 (989)
.|.....+..|.++.++.||||.+. ++..-.++-.++ .-.++|+++..||+|+.+
T Consensus 77 rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 77 RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc
Confidence 9999999999999999999999972 222223333333 335789999999999985
No 313
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.18 E-value=1e-05 Score=71.03 Aligned_cols=71 Identities=28% Similarity=0.225 Sum_probs=56.3
Q ss_pred EEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEee
Q 001965 491 MVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEG 570 (989)
Q Consensus 491 ~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~G 570 (989)
.++|++++.++.. ++++++||++|+|++||.+++.+.+ .....+|.+|+... .+++++.||+++++.+
T Consensus 2 ~~~v~~~~~~~~~-g~v~~~rv~~G~l~~g~~v~~~~~~-------~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~ 69 (83)
T cd01342 2 RALVFKVFKDKGR-GTVATGRVESGTLKKGDKVRVGPGG-------GGVKGKVKSLKRFK----GEVDEAVAGDIVGIVL 69 (83)
T ss_pred eeEEEEEEEeCCc-eEEEEEEEeeCEEecCCEEEEecCC-------ceeEEEEeEeEecC----ceeceecCCCEEEEEE
Confidence 5678888888754 5699999999999999999987631 11457788887665 6788999999999988
Q ss_pred ccc
Q 001965 571 VDA 573 (989)
Q Consensus 571 ld~ 573 (989)
.+.
T Consensus 70 ~~~ 72 (83)
T cd01342 70 KDK 72 (83)
T ss_pred ccc
Confidence 553
No 314
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.17 E-value=2e-05 Score=87.33 Aligned_cols=140 Identities=19% Similarity=0.287 Sum_probs=80.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
||-++|..|.|||||++.|+........ .. .+.......+..++......+.- ++-...+++|||||+
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~--------~~-~~~~~~~~~~~~~i~~~~~~l~e---~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISED--------SS-IPPPSASISRTLEIEERTVELEE---NGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS------------------S------SCEEEEEEEEEEEE---TCEEEEEEEEEEC-C
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccc--------cc-ccccccccccccceeeEEEEecc---CCcceEEEEEeCCCc
Confidence 7899999999999999999864332210 00 01111112233444433333321 234567999999997
Q ss_pred ccchHH------------------HHHHh---------hhcCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEEEcc
Q 001965 222 VNFSDE------------------MTAAL---------RLADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVVNKV 273 (989)
Q Consensus 222 ~df~~e------------------v~~al---------r~aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilviNKi 273 (989)
-+..+. +.... ...|++|..|++. .|+.+...+.++.+. ..+++|-||.|.
T Consensus 74 Gd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls-~~vNvIPvIaKa 152 (281)
T PF00735_consen 74 GDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS-KRVNVIPVIAKA 152 (281)
T ss_dssp SSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT-TTSEEEEEESTG
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc-ccccEEeEEecc
Confidence 643211 11111 1357999999986 688888877777664 457899999999
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHHHhhh
Q 001965 274 DRLITELKLPPKDAYHKLRHTIEVINNHISA 304 (989)
Q Consensus 274 D~~~~el~l~p~~~~~~l~~ii~~in~~l~~ 304 (989)
|.+..+ + ++...+.|+..+..
T Consensus 153 D~lt~~------e----l~~~k~~i~~~l~~ 173 (281)
T PF00735_consen 153 DTLTPE------E----LQAFKQRIREDLEE 173 (281)
T ss_dssp GGS-HH------H----HHHHHHHHHHHHHH
T ss_pred cccCHH------H----HHHHHHHHHHHHHH
Confidence 998422 2 44555666666654
No 315
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.15 E-value=1.5e-05 Score=87.86 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=72.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+-.|+++|-+|+|||||+.++......|. |+..... .-....+.. .....|.+-|-|
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIa-------------dYpFTTL----~PnLGvV~~------~~~~sfv~ADIP 215 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIA-------------DYPFTTL----VPNLGVVRV------DGGESFVVADIP 215 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCccc-------------CCccccc----cCcccEEEe------cCCCcEEEecCc
Confidence 44689999999999999999954332221 2211111 112222222 134569999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCCc----ccchHHHHHHHHHc-----CCCEEEEEEcccccc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEGV----MVNTERAIRHAIQE-----RLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~egv----~~qt~~~l~~~~~~-----~ip~ilviNKiD~~~ 277 (989)
|.+. +-....+-+..|-+.+.|||.+.-- ......+...+.++ +.|.+||+||||...
T Consensus 216 GLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 216 GLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 9864 3334556666788999999998532 23334444444433 569999999999764
No 316
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.14 E-value=3.7e-06 Score=89.34 Aligned_cols=89 Identities=21% Similarity=0.303 Sum_probs=59.6
Q ss_pred CceEEEEeeCCCcccch-----H-HHHHHhhhc--CeEEEEeecCCCcccchH-----HHHHHHHHcCCCEEEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFS-----D-EMTAALRLA--DGAVLIVDAAEGVMVNTE-----RAIRHAIQERLPIVVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~-----~-ev~~alr~a--D~ailVVDa~egv~~qt~-----~~l~~~~~~~ip~ilviNKiD~ 275 (989)
..+.+.||||||++.-. + -+..+++.+ -+++.|||....-.+.|- .....+.+.++|+|++.||.|.
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 34678999999997622 1 133344433 367788997765444442 2223446789999999999999
Q ss_pred cccccCCCchHHHHHHHHHHHH
Q 001965 276 LITELKLPPKDAYHKLRHTIEV 297 (989)
Q Consensus 276 ~~~el~l~p~~~~~~l~~ii~~ 297 (989)
...++-+.....|.+++..+++
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNE 215 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHh
Confidence 9888776666666666666654
No 317
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.08 E-value=6.5e-06 Score=89.13 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=36.3
Q ss_pred EEEEeeCCCcccchHHHHH------Hhh--hcCeEEEEeecCCCcccchH-----HHHHHHHHcCCCEEEEEEcccccc
Q 001965 212 LCNIMDSPGHVNFSDEMTA------ALR--LADGAVLIVDAAEGVMVNTE-----RAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~------alr--~aD~ailVVDa~egv~~qt~-----~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.+.|+||||+.+|...... .+. ..=++|+++|+.---.+..- ..+....+.++|.|.|+||+|++.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 6889999999887554332 222 23478889998743222211 111123457899999999999985
No 318
>PTZ00099 rab6; Provisional
Probab=98.07 E-value=9.3e-06 Score=83.88 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=53.3
Q ss_pred CCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEccccc
Q 001965 208 SKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 208 ~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~ 276 (989)
++...++|+||||+..|...+...++.||++|+|+|+......+.. ..+..+.. .++|++||.||+|+.
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 4567899999999999999999999999999999999885433322 22222222 357899999999986
No 319
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.06 E-value=1.3e-06 Score=85.18 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=75.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-.|+++|..-+|||+|+=+.+...- . .+......... +.+.+++ .++...++||||+|
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkF--n------~kHlsTlQASF--~~kk~n~------------ed~ra~L~IWDTAG 71 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKF--N------CKHLSTLQASF--QNKKVNV------------EDCRADLHIWDTAG 71 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhc--c------hhhHHHHHHHH--hhccccc------------ccceeeeeeeeccc
Confidence 3589999999999999977754211 0 00000000000 0111111 22445689999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH----HHHHHcCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI----RHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l----~~~~~~~ip~ilviNKiD~~ 276 (989)
+..|...=.-..|.+|||+||.|..+--..|-..-| +.+.-..+-+++|.||+|+.
T Consensus 72 QErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 72 QERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred hHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 999987777788999999999999986555543333 44445567899999999986
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.04 E-value=4.3e-05 Score=85.77 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=41.3
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.++.+.||||||... .....+..+|.++++.+...|-.. ...... -.++|.++++||+|+..
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el---~~~~~~-l~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDL---QGIKAG-LMEIADIYVVNKADGEG 186 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHH---HHHHHH-HhhhccEEEEEcccccc
Confidence 478899999999653 223467788999888654433211 111111 24678999999999974
No 321
>PTZ00258 GTP-binding protein; Provisional
Probab=98.04 E-value=1.3e-05 Score=92.19 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=56.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC----------
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS---------- 206 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~---------- 206 (989)
+..-..|+|+|.+|+|||||+++|.... ... +. .+ +.|+......+.+.+.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v--~n-~p---------------ftTi~p~~g~v~~~d~r~~~l~~~~~ 78 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPA--EN-FP---------------FCTIDPNTARVNVPDERFDWLCKHFK 78 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCc-ccc--cC-CC---------------CCcccceEEEEecccchhhHHHHHcC
Confidence 4444569999999999999999994322 111 00 11 1122222222222211
Q ss_pred --CCCceEEEEeeCCCccc-------chHHHHHHhhhcCeEEEEeecC
Q 001965 207 --NSKSYLCNIMDSPGHVN-------FSDEMTAALRLADGAVLIVDAA 245 (989)
Q Consensus 207 --~~~~~~inlIDTPGh~d-------f~~ev~~alr~aD~ailVVDa~ 245 (989)
+.-...+.|+||||.+. ........++.||++++|||+.
T Consensus 79 ~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 79 PKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 01134589999999763 3446778899999999999995
No 322
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.02 E-value=3.7e-05 Score=81.84 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=67.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|.++|..|+||||+.|.|+........ .... . .|.........+ .+..+++|||||.
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~--~~~~---~------------~t~~~~~~~~~~-----~g~~v~VIDTPGl 59 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSG--SSAK---S------------VTQECQKYSGEV-----DGRQVTVIDTPGL 59 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS----TTTS---S--------------SS-EEEEEEE-----TTEEEEEEE--SS
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeec--cccC---C------------cccccceeeeee-----cceEEEEEeCCCC
Confidence 6999999999999999999865432211 0000 0 010111111122 6688999999997
Q ss_pred ccc-------hHHHHHHhh----hcCeEEEEeecCCCcccchHHHHHHHHH-cC----CCEEEEEEcccccc
Q 001965 222 VNF-------SDEMTAALR----LADGAVLIVDAAEGVMVNTERAIRHAIQ-ER----LPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df-------~~ev~~alr----~aD~ailVVDa~egv~~qt~~~l~~~~~-~~----ip~ilviNKiD~~~ 277 (989)
-|- ..++..++. ..+++|||+... ..+......++.+.. .+ ..+||+++..|.+.
T Consensus 60 ~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 60 FDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp EETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred CCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 541 233444443 358899999988 666666667766543 12 26899999999874
No 323
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=8.4e-06 Score=82.61 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=78.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
..|.++|-=++||||++..|- .+.+. . + --|+....-++.+ ++..++++|.-|
T Consensus 18 ~~IlmlGLD~AGKTTILykLk--~~E~v------t--t------------vPTiGfnVE~v~y-----kn~~f~vWDvGG 70 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLK--LGEIV------T--T------------VPTIGFNVETVEY-----KNISFTVWDVGG 70 (181)
T ss_pred EEEEEEeccCCCceeeeEeec--cCCcc------c--C------------CCccccceeEEEE-----cceEEEEEecCC
Confidence 359999999999999998872 22111 0 0 0133333334444 688899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCc--ccchHHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGV--MVNTERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv--~~qt~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
+..+..-.....+..+++|+|||+++-. ...-+++.+.+.. .+.|++++.||.|..+
T Consensus 71 q~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 71 QEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred CcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 9999999999999999999999998632 2222333344332 3679999999999885
No 324
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.00 E-value=1.8e-05 Score=90.51 Aligned_cols=127 Identities=18% Similarity=0.276 Sum_probs=73.1
Q ss_pred HHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCC
Q 001965 129 FLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNS 208 (989)
Q Consensus 129 ~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~ 208 (989)
.|..|-..-...|.++|+|.+|+||||+++.+......+. ...| |.+ ++...+.+.
T Consensus 157 hl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevq--------pYaF------------TTk----sL~vGH~dy 212 (620)
T KOG1490|consen 157 HLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ--------PYAF------------TTK----LLLVGHLDY 212 (620)
T ss_pred HHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccC--------Cccc------------ccc----hhhhhhhhh
Confidence 3333433345689999999999999999887732211111 0111 111 122233344
Q ss_pred CceEEEEeeCCCcccchH------H--HHHHhhhc-CeEEEEeecCCCcccchHHHHHH---H--HHcCCCEEEEEEccc
Q 001965 209 KSYLCNIMDSPGHVNFSD------E--MTAALRLA-DGAVLIVDAAEGVMVNTERAIRH---A--IQERLPIVVVVNKVD 274 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~------e--v~~alr~a-D~ailVVDa~egv~~qt~~~l~~---~--~~~~ip~ilviNKiD 274 (989)
+-..|.+|||||.-|--. | .++|+... -+++++.|.++-+...-+.-+++ + .-.+.|.|+|+||+|
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D 292 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKID 292 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccc
Confidence 555789999999865221 2 22444433 35677888886443222222222 2 234679999999999
Q ss_pred ccccc
Q 001965 275 RLITE 279 (989)
Q Consensus 275 ~~~~e 279 (989)
....+
T Consensus 293 ~m~~e 297 (620)
T KOG1490|consen 293 AMRPE 297 (620)
T ss_pred ccCcc
Confidence 98644
No 325
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.99 E-value=3.4e-05 Score=82.75 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=77.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.-+++.|..|+|||+|++.++.... +...++...+.++ +| .... -+..+.++|.||
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~K~g~Tq-------------~i-----n~f~-----v~~~~~~vDlPG 192 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKN-IADTSKSKNGKTQ-------------AI-----NHFH-----VGKSWYEVDLPG 192 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhh-hhhhcCCCCccce-------------ee-----eeee-----ccceEEEEecCC
Confidence 3499999999999999999975322 2111121122111 11 1111 234588999999
Q ss_pred c----------ccchHHHHHHhh---hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 H----------VNFSDEMTAALR---LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h----------~df~~ev~~alr---~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
. .++.+-+...+- ..=.+.++||++-++++.+-..+.++.+.++|+.+|+||||+.
T Consensus 193 ~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 193 YGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred cccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 2 244444444442 3346788999999999999999999999999999999999996
No 326
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=2e-05 Score=78.78 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=78.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhh-cCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ-THHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~-~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+|.|+|.-++|||||+.++=.. ++.. +.. + +.+.. .|+....-+... ....+++||--|
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~--------~~l---~--~~ki~--~tvgLnig~i~v-----~~~~l~fwdlgG 78 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAY--------GGL---N--PSKIT--PTVGLNIGTIEV-----CNAPLSFWDLGG 78 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhh--------cCC---C--HHHee--cccceeecceee-----ccceeEEEEcCC
Confidence 5889999999999999987321 1000 000 0 11111 122222222322 345699999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCc-----ccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGV-----MVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv-----~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.....+........|+++|.||||.+.- ..+-+.+..+=...++|+++.+||-|+..
T Consensus 79 Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 79 QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence 9999999999999999999999999732 22233444444567899999999999974
No 327
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.93 E-value=2.6e-05 Score=88.77 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=63.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-||||+|.+|+|||||+|+|..-.+. +.|....|... .|...+ .+.+ . +--.+.+||.||
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~--d~~aA~tGv~e------------tT~~~~--~Y~~--p--~~pnv~lWDlPG 95 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHE--DEGAAPTGVVE------------TTMEPT--PYPH--P--KFPNVTLWDLPG 95 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TT--STTS--SSSHS------------CCTS-E--EEE---S--S-TTEEEEEE--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CcCcCCCCCCc------------CCCCCe--eCCC--C--CCCCCeEEeCCC
Confidence 38999999999999999999543221 11111111110 011111 1111 1 222489999999
Q ss_pred cc--cchHHHH---HHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 221 HV--NFSDEMT---AALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~--df~~ev~---~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.. +|..+-. -.+...|..|+|.+. -.......+++.+.+.+.|+.+|-+|+|.-.
T Consensus 96 ~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 96 IGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDL 155 (376)
T ss_dssp GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHH
T ss_pred CCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccH
Confidence 74 4433321 246778987777663 3456667788889999999999999999843
No 328
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.91 E-value=2.4e-05 Score=86.23 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=52.5
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC---------C---CCc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS---------N---SKS 210 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~---------~---~~~ 210 (989)
|+|+|.+|+|||||.++|......+. . | .+.|+......+.+.+. + .-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~---n-------~---------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~ 61 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAA---N-------Y---------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVP 61 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccc---c-------c---------cccchhceeeeEEeccchhhhHHHHhCCceeee
Confidence 68999999999999999954332111 0 0 11122222222222110 0 012
Q ss_pred eEEEEeeCCCccc-------chHHHHHHhhhcCeEEEEeecCC
Q 001965 211 YLCNIMDSPGHVN-------FSDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 211 ~~inlIDTPGh~d-------f~~ev~~alr~aD~ailVVDa~e 246 (989)
..+.++||||.+. +.......++.+|++++|||+.+
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 3589999999763 33456778899999999999863
No 329
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.91 E-value=6.2e-06 Score=82.19 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=80.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
++...+.|+|..++||||++.+.+ .|...+ ..+.+-..|+.+ |.|.+ ......+.++|
T Consensus 18 e~aiK~vivGng~VGKssmiqryC--kgifTk----dykktIgvdfle----rqi~v------------~~Edvr~mlWd 75 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYC--KGIFTK----DYKKTIGVDFLE----RQIKV------------LIEDVRSMLWD 75 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHh--cccccc----ccccccchhhhh----HHHHh------------hHHHHHHHHHH
Confidence 345678999999999999999875 333321 112233334331 22222 11344567999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHH---HHHcCCCEEEEEEccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRH---AIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~---~~~~~ip~ilviNKiD~~ 276 (989)
|.|..+|..-+-+..|.|...+||++..+--......-|+. ..-..+|.++|-||||++
T Consensus 76 tagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 76 TAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred hccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 99999999999999999999999999887543332222332 234578999999999998
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.90 E-value=0.00017 Score=80.54 Aligned_cols=142 Identities=20% Similarity=0.321 Sum_probs=91.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
--||-++|..|.||||+++.|+.... .... .+-+....-...++.|..+...+.- ++-...+|+||||
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l-~~~~--------~~~~~~~~~~~~~~~i~~~~~~l~e---~~~~~~l~vIDtp 90 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSL-VDET--------EIDDIRAEGTSPTLEIKITKAELEE---DGFHLNLTVIDTP 90 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhc-cCCC--------CccCcccccCCcceEEEeeeeeeec---CCeEEEEEEeccC
Confidence 34899999999999999999987622 1110 1111111113445555554444332 2345578999999
Q ss_pred CcccchHHH------H--------HHh-------hh-------cCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEE
Q 001965 220 GHVNFSDEM------T--------AAL-------RL-------ADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVV 270 (989)
Q Consensus 220 Gh~df~~ev------~--------~al-------r~-------aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilvi 270 (989)
|+-||.+.. . ..+ |. .++||..+-.+ +|+.+...+..+.+. ..+-+|=||
T Consensus 91 GfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls-~~vNlIPVI 169 (373)
T COG5019 91 GFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS-KRVNLIPVI 169 (373)
T ss_pred CccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh-cccCeeeee
Confidence 998875431 1 111 21 46888888865 788888888777654 456788899
Q ss_pred EcccccccccCCCchHHHHHHHHHHHHHHHHhhh
Q 001965 271 NKVDRLITELKLPPKDAYHKLRHTIEVINNHISA 304 (989)
Q Consensus 271 NKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~ 304 (989)
-|.|.+..+ + +...-+.|+..+..
T Consensus 170 ~KaD~lT~~------E----l~~~K~~I~~~i~~ 193 (373)
T COG5019 170 AKADTLTDD------E----LAEFKERIREDLEQ 193 (373)
T ss_pred eccccCCHH------H----HHHHHHHHHHHHHH
Confidence 999998533 2 45566777777765
No 331
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.89 E-value=8e-05 Score=67.08 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=58.7
Q ss_pred CeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE
Q 001965 489 PLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI 568 (989)
Q Consensus 489 pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I 568 (989)
||.+.|...|..+ . +.+..|||.+|++++||+|+++..+ ...+|..|... ..++++|.|||.|++
T Consensus 1 p~r~~V~~v~~~~-~-g~vv~G~v~~G~i~~Gd~v~i~P~~---------~~~~V~si~~~----~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-G-GTVVSGKVESGSIQKGDTLLVMPSK---------ESVEVKSIYVD----DEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-C-CcEEEEEEeeeEEeCCCEEEEeCCC---------cEEEEEEEEEC----CeECCEECCCCEEEE
Confidence 5677777777666 3 5688999999999999999998755 35678887643 478999999999985
Q ss_pred --eeccc-eeeccceee
Q 001965 569 --EGVDA-SIMKSATLC 582 (989)
Q Consensus 569 --~Gld~-~~~k~~Tl~ 582 (989)
.+++. .+.+|+.|+
T Consensus 66 ~l~~~~~~~v~~G~vl~ 82 (83)
T cd03698 66 KLKGIDEEDISPGDVLC 82 (83)
T ss_pred EECCCCHHHCCCCCEEe
Confidence 45432 344455554
No 332
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.82 E-value=5.3e-05 Score=86.25 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=53.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec---------C---CCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED---------S---NSK 209 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---------~---~~~ 209 (989)
.|+|+|.+|+|||||+++|......+. . - .+.|+......+.+.+ + +.-
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~~~v~---n-y---------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~ 64 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAGAEAA---N-Y---------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCeec---c-c---------------ccccccceEEEEEeccccchhhHHhcCCcccc
Confidence 599999999999999999964331111 0 0 1112211111111111 0 011
Q ss_pred ceEEEEeeCCCccc-------chHHHHHHhhhcCeEEEEeecCC
Q 001965 210 SYLCNIMDSPGHVN-------FSDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 210 ~~~inlIDTPGh~d-------f~~ev~~alr~aD~ailVVDa~e 246 (989)
...+.|+||||... +.......++.||++++|||+.+
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 23589999999764 33456778999999999999963
No 333
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.82 E-value=6.8e-05 Score=72.34 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=76.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
..|..+|--++||||++..|-.... ...-...|.+++. +.+ ...+++|++|.-|
T Consensus 18 irilllGldnAGKTT~LKqL~sED~------------------~hltpT~GFn~k~----v~~----~g~f~LnvwDiGG 71 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDP------------------RHLTPTNGFNTKK----VEY----DGTFHLNVWDIGG 71 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCCh------------------hhccccCCcceEE----Eee----cCcEEEEEEecCC
Confidence 3489999999999999999943211 0111123444432 222 1458899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCc--ccchHHHHHHHH---HcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGV--MVNTERAIRHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv--~~qt~~~l~~~~---~~~ip~ilviNKiD~~~ 277 (989)
......-........|+.|+|||+.+-- ....+++..++. -..+|+.++.||-|++.
T Consensus 72 qr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 72 QRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred ccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 9998899999999999999999976532 112223333333 34569999999999984
No 334
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=3.4e-05 Score=75.63 Aligned_cols=68 Identities=28% Similarity=0.246 Sum_probs=52.3
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcc-cchHHHHHH----HHHcCCCEEEEEEcccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVM-VNTERAIRH----AIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~-~qt~~~l~~----~~~~~ip~ilviNKiD~~~ 277 (989)
..++.|+||+|+..|.+.+.+-.|.|=|.+|+.|....-. ..++..+.+ +.-++.-+|++.||.|+..
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 3567899999999999999999999999999999875322 222333333 3445667999999999973
No 335
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.77 E-value=9.2e-05 Score=83.49 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=29.4
Q ss_pred ceEEEEeeCCCcc----cc---hHHHHHHhhhcCeEEEEeecCC
Q 001965 210 SYLCNIMDSPGHV----NF---SDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 210 ~~~inlIDTPGh~----df---~~ev~~alr~aD~ailVVDa~e 246 (989)
...+.|+||||.+ .+ .......+|.||++++|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4579999999984 23 2356678999999999999974
No 336
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.77 E-value=0.00017 Score=70.62 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=79.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
.-.|.++|..++|||.+++.|++-.+.+.. .. ..+.-|.. ..++. ..++-...+.|-||.
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~---e~--~pTiEDiY-------------~~sve--t~rgarE~l~lyDTa 68 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGT---EL--HPTIEDIY-------------VASVE--TDRGAREQLRLYDTA 68 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCC---cc--ccchhhhe-------------eEeee--cCCChhheEEEeecc
Confidence 345899999999999999999987775531 10 01111111 01111 112233468899999
Q ss_pred CcccchHHHH-HHhhhcCeEEEEeecCCCcccchHHHHHHHH-----HcCCCEEEEEEccccc
Q 001965 220 GHVNFSDEMT-AALRLADGAVLIVDAAEGVMVNTERAIRHAI-----QERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df~~ev~-~alr~aD~ailVVDa~egv~~qt~~~l~~~~-----~~~ip~ilviNKiD~~ 276 (989)
|..+.-.+.. ..+..+|+.+||.|..+--..|-.++++.-. +..+|+++..||.||.
T Consensus 69 Glq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 69 GLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred cccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 9998855544 5678899999999999877666666665432 2346999999999996
No 337
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=4.1e-05 Score=87.60 Aligned_cols=134 Identities=21% Similarity=0.142 Sum_probs=74.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCc---cceeee------eEEEEeeeeEEEee--cCCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTR---IDEQER------RISIKAVPMSLVLE--DSNS 208 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~---~~E~~r------giti~~~~~~~~~~--~~~~ 208 (989)
-.+++++|++|+||||++..|..... .+.|...- ....+|+. ..|+-+ |+.+......-.+. -.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~--~~~G~~~V-~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV--MRFGASKV-ALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--HhcCCCeE-EEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 46899999999999999999975421 00010000 01112221 111111 23222110000000 0012
Q ss_pred CceEEEEeeCCCcc---cchHHHHHHhhhcC---eEEEEeecCCCcccchHHHHHHHHHcCCC-------EEEEEEcccc
Q 001965 209 KSYLCNIMDSPGHV---NFSDEMTAALRLAD---GAVLIVDAAEGVMVNTERAIRHAIQERLP-------IVVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~---df~~ev~~alr~aD---~ailVVDa~egv~~qt~~~l~~~~~~~ip-------~ilviNKiD~ 275 (989)
.++.+.||||||.. ++..+....+..++ -.+||+++..+....++.+++.....++| -=++++|+|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 45679999999987 34445556665554 44999999998777666666665544332 2577899997
Q ss_pred c
Q 001965 276 L 276 (989)
Q Consensus 276 ~ 276 (989)
.
T Consensus 294 t 294 (374)
T PRK14722 294 A 294 (374)
T ss_pred C
Confidence 6
No 338
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=7.6e-05 Score=74.10 Aligned_cols=112 Identities=17% Similarity=0.281 Sum_probs=73.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
.-.+.++|--|+|||||+.+|=... .+...+ |...+.-.+.+ .+..++-+|--
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDr-----l~qhvP-----------------TlHPTSE~l~I-----g~m~ftt~DLG 72 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDR-----LGQHVP-----------------TLHPTSEELSI-----GGMTFTTFDLG 72 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccc-----ccccCC-----------------CcCCChHHhee-----cCceEEEEccc
Confidence 3458899999999999999983211 111111 11111111112 45668899999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCccc-chHHHHHHH----HHcCCCEEEEEEccccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMV-NTERAIRHA----IQERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~-qt~~~l~~~----~~~~ip~ilviNKiD~~~~ 278 (989)
||..-..-....+..+|++|.+|||.+--.. ..+..+..+ .-.++|+++..||||+...
T Consensus 73 GH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 73 GHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred cHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 9987777777888999999999999864322 222223322 2357899999999999853
No 339
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.72 E-value=0.00021 Score=85.56 Aligned_cols=115 Identities=10% Similarity=0.156 Sum_probs=65.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|.+|+|||||+|+|+........ ....+++ ....+...+ .+..+++||||
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vs--s~~~~TT----------------r~~ei~~~i-----dG~~L~VIDTP 174 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTD--AFGMGTT----------------SVQEIEGLV-----QGVKIRVIDTP 174 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccccc--CCCCCce----------------EEEEEEEEE-----CCceEEEEECC
Confidence 457999999999999999999865432220 0001100 001111112 35679999999
Q ss_pred Ccccch------HHHH----HHhh--hcCeEEEEeecCCCcc-cchHHHHHHHHH---cC--CCEEEEEEcccccc
Q 001965 220 GHVNFS------DEMT----AALR--LADGAVLIVDAAEGVM-VNTERAIRHAIQ---ER--LPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~------~ev~----~alr--~aD~ailVVDa~egv~-~qt~~~l~~~~~---~~--ip~ilviNKiD~~~ 277 (989)
|..+.. .++. ..+. ..|++|+|+.....-. ......++.+.. .+ -.+||+++..|.+-
T Consensus 175 GL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 175 GLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 998642 2222 2333 3688777766542211 123334444421 12 27899999999873
No 340
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.72 E-value=8.7e-05 Score=76.19 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=43.2
Q ss_pred CceEEEEeeCCCcccchHHHHHHh------hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAAL------RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~al------r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.++.+.||||||...+..+....+ ...|++++|+|+..+... -..+.+.....+ -.-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA-VNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH-HHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 456789999999975544333332 238999999999754322 233333334445 3677889999874
No 341
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=0.00014 Score=73.05 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=41.9
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD 274 (989)
.++.+.||||||.. .....+++.||.+|+|+....+ ....+++. .....-=+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~---D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG---DDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch---hHHHHhhh-hHhhhcCEEEEeCCC
Confidence 46889999999954 4456799999999999988732 22333333 233345689999998
No 342
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.68 E-value=0.00016 Score=84.08 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=29.9
Q ss_pred eEEEEeeCCCccc-------chHHHHHHhhhcCeEEEEeecCCC
Q 001965 211 YLCNIMDSPGHVN-------FSDEMTAALRLADGAVLIVDAAEG 247 (989)
Q Consensus 211 ~~inlIDTPGh~d-------f~~ev~~alr~aD~ailVVDa~eg 247 (989)
..++|+||||.+. ......+.+|.||++++|||+..+
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~ 115 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGS 115 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 5689999999753 344677789999999999999853
No 343
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=9.9e-05 Score=74.87 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=78.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
.++.++++|..+.||||+..+.+ ++.... .-..|+....-.+.+. .+.+...++.+||
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~-------------------~y~at~Gv~~~pl~f~-tn~g~irf~~wdt 66 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEK-------------------TYPATLGVEVHPLLFD-TNRGQIRFNVWDT 66 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--ccccee-------------------cccCcceeEEeeeeee-cccCcEEEEeeec
Confidence 47889999999999999999886 332221 1111222222222221 1223588999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HH--HHcCCCEEEEEEccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HA--IQERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~--~~~~ip~ilviNKiD~~ 276 (989)
.|...|........-.+-+||+++|+..-++.+...-|. -+ ...++|++++.||.|-.
T Consensus 67 agqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 67 AGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred ccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 999999887777777888999999998766544332232 22 24568999999999976
No 344
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00037 Score=67.36 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=76.1
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|..+|-.++||||++-.|........ . ..-|.++++ +.+ ++..+|++|.-|..
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~~-----i-------------pTvGFnvet----Vty-----kN~kfNvwdvGGqd 72 (180)
T KOG0071|consen 20 ILMLGLDAAGKTTILYKLKLGQSVTT-----I-------------PTVGFNVET----VTY-----KNVKFNVWDVGGQD 72 (180)
T ss_pred EEEEecccCCceehhhHHhcCCCccc-----c-------------cccceeEEE----EEe-----eeeEEeeeeccCch
Confidence 78899999999999998853221110 0 012233322 222 77889999999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCC--cccchHHHHHHH---HHcCCCEEEEEEccccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEG--VMVNTERAIRHA---IQERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~eg--v~~qt~~~l~~~---~~~~ip~ilviNKiD~~~~ 278 (989)
+......+....+-+.|+|+|+... +...-.++-+.+ ....++++|..||-|+..+
T Consensus 73 ~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A 133 (180)
T KOG0071|consen 73 KIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA 133 (180)
T ss_pred hhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc
Confidence 9999999999999999999998764 222222222222 3446799999999999853
No 345
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.66 E-value=0.00012 Score=77.27 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=37.6
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE--EEEEEcccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI--VVVVNKVDRLI 277 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~--ilviNKiD~~~ 277 (989)
.....+|.|.|.. ...... -..+|++|+|+|+.+|...+.. ...++.. ++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhccc
Confidence 3567899999931 111111 2237999999999987653211 1124444 99999999973
No 346
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.66 E-value=0.00051 Score=70.81 Aligned_cols=66 Identities=27% Similarity=0.329 Sum_probs=56.3
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
..|.+.||||||... ..+..++..||.+++|+.+...-...+.++++.+.+.++|+.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 568899999997753 467788999999999999987666677888888888899999999999864
No 347
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.65 E-value=0.00066 Score=71.25 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
..--||.++|..|.|||||++.|.. ++.... +. .|....-....+.|++..-.+.- ++-.-++|+||
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~-s~v~~~--s~-------~~~~~~p~pkT~eik~~thvieE---~gVklkltviD 110 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFK-SHVSDS--SS-------SDNSAEPIPKTTEIKSITHVIEE---KGVKLKLTVID 110 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHH-HHHhhc--cC-------CCcccCcccceEEEEeeeeeeee---cceEEEEEEec
Confidence 3446899999999999999999853 443321 11 12222222233344444333322 22345689999
Q ss_pred CCCcccchHH---------------------HHHHh---h----hcCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEE
Q 001965 218 SPGHVNFSDE---------------------MTAAL---R----LADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVV 268 (989)
Q Consensus 218 TPGh~df~~e---------------------v~~al---r----~aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~il 268 (989)
|||+-|+... -..+. + ...+++..|.+. +.+.+-+.+.++.+-+ -+-+|-
T Consensus 111 TPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvP 189 (336)
T KOG1547|consen 111 TPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVP 189 (336)
T ss_pred CCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeee
Confidence 9998775421 11111 1 246888888876 4556667776666532 346777
Q ss_pred EEEcccccccc
Q 001965 269 VVNKVDRLITE 279 (989)
Q Consensus 269 viNKiD~~~~e 279 (989)
||-|.|.+.+|
T Consensus 190 VIakaDtlTle 200 (336)
T KOG1547|consen 190 VIAKADTLTLE 200 (336)
T ss_pred eEeecccccHH
Confidence 89999999876
No 348
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.59 E-value=0.00017 Score=84.34 Aligned_cols=118 Identities=24% Similarity=0.242 Sum_probs=78.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+..+| |+++|.-|+|||||+=+|+...-.-. + + .+ . .-|+|-+. .........|+
T Consensus 7 ~kdVR-IvliGD~G~GKtSLImSL~~eef~~~----V-P--~r-l--------~~i~IPad--------vtPe~vpt~iv 61 (625)
T KOG1707|consen 7 LKDVR-IVLIGDEGVGKTSLIMSLLEEEFVDA----V-P--RR-L--------PRILIPAD--------VTPENVPTSIV 61 (625)
T ss_pred ccceE-EEEECCCCccHHHHHHHHHhhhcccc----c-c--cc-C--------CccccCCc--------cCcCcCceEEE
Confidence 34566 99999999999999999986543211 0 0 01 1 11333211 11123347899
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCC-----CcccchHHHHHHHH--HcCCCEEEEEEcccccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAE-----GVMVNTERAIRHAI--QERLPIVVVVNKVDRLITE 279 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~e-----gv~~qt~~~l~~~~--~~~ip~ilviNKiD~~~~e 279 (989)
||..-.+-...+...+|.||.+.+|.++.+ +++..-.-++++.. -.++|+|+|.||+|....+
T Consensus 62 D~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 62 DTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred ecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 999777766777899999999999997664 55444444555543 2467999999999998543
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.57 E-value=0.00015 Score=84.39 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=42.2
Q ss_pred CceEEEEeeCCCcccchH----HHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSD----EMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~----ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.||||||...... ++....+ ..|-++||+|+..|-.. ....+...+.--+--+++||+|..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 367899999999865443 3333222 35789999999877332 222232222223678899999985
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00067 Score=80.67 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCC---------CCcceeccCccc-eeeeeEEE-------------
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNS---------EKHTRYTDTRID-EQERRISI------------- 194 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~---------~~~~~~~D~~~~-E~~rgiti------------- 194 (989)
.+.-.|+|.|.+++||||++|+++.+.-....+|... +|...+.-+... |..--.|+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3445799999999999999999997653332222111 121111111000 11000111
Q ss_pred -EeeeeEEEeecCCC--CceEEEEeeCCCcc---cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEE
Q 001965 195 -KAVPMSLVLEDSNS--KSYLCNIMDSPGHV---NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVV 268 (989)
Q Consensus 195 -~~~~~~~~~~~~~~--~~~~inlIDTPGh~---df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~il 268 (989)
..+...+.|++.+- -.-.+.+||.||.. .+...+..-.-.+|+.|+|+.|-.-.+......++.+.+.+.-+.|
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFI 266 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFI 266 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEE
Confidence 12233344433210 01157899999973 5677777888899999999999877666556666666666555667
Q ss_pred EEEcccccccc
Q 001965 269 VVNKVDRLITE 279 (989)
Q Consensus 269 viNKiD~~~~e 279 (989)
+.||+|....|
T Consensus 267 lnnkwDasase 277 (749)
T KOG0448|consen 267 LNNKWDASASE 277 (749)
T ss_pred Eechhhhhccc
Confidence 77899998544
No 351
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.55 E-value=0.00046 Score=70.02 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=68.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcc------cccCCCCCCcceeccCccc--eeeeeEEEEeeeeEEEeec-----C--
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHM------STFDPNSEKHTRYTDTRID--EQERRISIKAVPMSLVLED-----S-- 206 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i------~~~g~~~~~~~~~~D~~~~--E~~rgiti~~~~~~~~~~~-----~-- 206 (989)
-+.++|..|+|||||+..++...... ...|.. . .|.... ...+-+.+..+.+.+.... .
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~-----~-~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~ 75 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEV-----G-IDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLD 75 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCcc-----c-hhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHH
Confidence 36799999999999999998653110 011111 1 111100 1112233443333332210 0
Q ss_pred -------CCCceEEEEeeCCCcccchHH--------HHHHhhhcCeEEEEeecCCCccc--chHHHHHHHHHcCCCEEEE
Q 001965 207 -------NSKSYLCNIMDSPGHVNFSDE--------MTAALRLADGAVLIVDAAEGVMV--NTERAIRHAIQERLPIVVV 269 (989)
Q Consensus 207 -------~~~~~~inlIDTPGh~df~~e--------v~~alr~aD~ailVVDa~egv~~--qt~~~l~~~~~~~ip~ilv 269 (989)
......+.+|||||..+-... ...+.-.+|+++.|||+...... ....+..|+.. .=+++
T Consensus 76 l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~iv 152 (158)
T cd03112 76 LLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRIL 152 (158)
T ss_pred HHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEE
Confidence 123467889999998753222 22344468999999999754431 12223344433 34789
Q ss_pred EEcccc
Q 001965 270 VNKVDR 275 (989)
Q Consensus 270 iNKiD~ 275 (989)
+||+|+
T Consensus 153 lnk~dl 158 (158)
T cd03112 153 LNKTDL 158 (158)
T ss_pred EecccC
Confidence 999996
No 352
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.54 E-value=0.00042 Score=78.15 Aligned_cols=132 Identities=20% Similarity=0.172 Sum_probs=80.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCc------ccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec--------
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHH------MSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED-------- 205 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~------i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~-------- 205 (989)
|+...|.|..|+|||||+++|+.+.+. ++++|...--. .+.....-+.-..+..+++.+...+
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~---~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~ 77 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDG---GALLSDTGEEVVELTNGCICCTVRDDLLPALER 77 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccC---CCccccCCccEEEeCCceEEEeccchhHHHHHH
Confidence 456789999999999999999977551 13344322110 0112222233455666677766322
Q ss_pred --CCCCceEEEEeeCCCcccchH--------HHHHHhhhcCeEEEEeecCCCcccch---HHHHHHHHHcCCCEEEEEEc
Q 001965 206 --SNSKSYLCNIMDSPGHVNFSD--------EMTAALRLADGAVLIVDAAEGVMVNT---ERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 206 --~~~~~~~inlIDTPGh~df~~--------ev~~alr~aD~ailVVDa~egv~~qt---~~~l~~~~~~~ip~ilviNK 272 (989)
.........+|-|-|..+=.. ...+..-..|++|-||||........ ....+|+.. .=+|++||
T Consensus 78 L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlNK 154 (323)
T COG0523 78 LLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLNK 154 (323)
T ss_pred HHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEec
Confidence 012236788999999865222 23334445689999999997665433 233333333 34899999
Q ss_pred ccccc
Q 001965 273 VDRLI 277 (989)
Q Consensus 273 iD~~~ 277 (989)
.|+..
T Consensus 155 ~Dlv~ 159 (323)
T COG0523 155 TDLVD 159 (323)
T ss_pred ccCCC
Confidence 99985
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.54 E-value=0.00012 Score=81.00 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCc---cce------eeeeEEEEeeee-----EEEe
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTR---IDE------QERRISIKAVPM-----SLVL 203 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~---~~E------~~rgiti~~~~~-----~~~~ 203 (989)
...+.|+++|+.|+||||++-.|..... +.|.... .--.|.. ..| ..+|+.+..... ...+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~--li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVL--LAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEE--EEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHH
Confidence 3467899999999999999988864321 1111000 0011211 001 123333321100 0000
Q ss_pred ---ecCCCCceEEEEeeCCCcccchHHHHH-------Hhh-----hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEE
Q 001965 204 ---EDSNSKSYLCNIMDSPGHVNFSDEMTA-------ALR-----LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVV 268 (989)
Q Consensus 204 ---~~~~~~~~~inlIDTPGh~df~~ev~~-------alr-----~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~il 268 (989)
.....+++.+.||||||.......... ... .+|..+||+|+..|-. +........+.--+.-+
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~g~ 222 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNEAVGLTGI 222 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHhhCCCCEE
Confidence 001125678999999998754433322 222 2899999999986522 22222221211125688
Q ss_pred EEEccccc
Q 001965 269 VVNKVDRL 276 (989)
Q Consensus 269 viNKiD~~ 276 (989)
++||+|-.
T Consensus 223 IlTKlDe~ 230 (272)
T TIGR00064 223 ILTKLDGT 230 (272)
T ss_pred EEEccCCC
Confidence 99999985
No 354
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00041 Score=66.62 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=74.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
|-.-.|+|..|+|||.|+..+....-... .. ..-|+......+.+ .+...++.|+||+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmad--------------cp---htigvefgtriiev-----sgqkiklqiwdta 68 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CP---HTIGVEFGTRIIEV-----SGQKIKLQIWDTA 68 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhc--------------CC---cccceecceeEEEe-----cCcEEEEEEeecc
Confidence 44567999999999999988854321110 00 00111111111111 2356678999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHHHc---CCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAIQE---RLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~~~---~ip~ilviNKiD~~~ 277 (989)
|+..|..-+.+..|.+-||++|.|...--+......|- -++.. +.-++++.||.|+..
T Consensus 69 gqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 69 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred cHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 99999999999999999999999987654433333332 12222 335778889999863
No 355
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.52 E-value=0.00015 Score=78.05 Aligned_cols=145 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred HHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcc--------cccCCCCCCcceeccCccc---eeeeeEEEE
Q 001965 127 TQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHM--------STFDPNSEKHTRYTDTRID---EQERRISIK 195 (989)
Q Consensus 127 ~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i--------~~~g~~~~~~~~~~D~~~~---E~~rgiti~ 195 (989)
.+.|..+.....+-..|+|.|.+|+|||||++.|...-..- ....+...|+.-.-|.... ....++=|.
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence 45566666555566779999999999999999997442110 0011111122222222111 122344454
Q ss_pred eeeeEEEeec-----------CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC
Q 001965 196 AVPMSLVLED-----------SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL 264 (989)
Q Consensus 196 ~~~~~~~~~~-----------~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i 264 (989)
+.+..=.+.. ++.-+|.+.||-|.|--. .|+ .-...+|..++|+-...|-..|.... .-..+
T Consensus 96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~Ka----GimEi 168 (266)
T PF03308_consen 96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKA----GIMEI 168 (266)
T ss_dssp EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-T----THHHH
T ss_pred ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhh----hhhhh
Confidence 4432211100 122468899999999654 233 23678999999999988877776421 01112
Q ss_pred CEEEEEEccccccc
Q 001965 265 PIVVVVNKVDRLIT 278 (989)
Q Consensus 265 p~ilviNKiD~~~~ 278 (989)
.=|+|+||.|+...
T Consensus 169 aDi~vVNKaD~~gA 182 (266)
T PF03308_consen 169 ADIFVVNKADRPGA 182 (266)
T ss_dssp -SEEEEE--SHHHH
T ss_pred ccEEEEeCCChHHH
Confidence 56999999998764
No 356
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00047 Score=77.73 Aligned_cols=140 Identities=14% Similarity=0.260 Sum_probs=88.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-|+-++|..|.|||||+|.|+.....-. ..+ +.......+...+......+.- ++-...+|+|||||
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~---------~~~-~~~~~~~~~t~~i~~~~~~iee---~g~~l~LtvidtPG 88 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGN---------REV-PGASERIKETVEIESTKVEIEE---NGVKLNLTVIDTPG 88 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCC---------ccc-CCcccCccccceeeeeeeeecC---CCeEEeeEEeccCC
Confidence 3688999999999999999986622111 000 1122222334444444433322 23445689999999
Q ss_pred cccchHHH--------------HH-----------Hhh--hcCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEEEc
Q 001965 221 HVNFSDEM--------------TA-----------ALR--LADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 221 h~df~~ev--------------~~-----------alr--~aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilviNK 272 (989)
..|+.+.. .. ... ..++++..|... +|+.+......+.+ ..++.+|-||-|
T Consensus 89 fGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l-~~~vNiIPVI~K 167 (366)
T KOG2655|consen 89 FGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL-SKKVNLIPVIAK 167 (366)
T ss_pred CcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH-hccccccceeec
Confidence 98765421 11 111 467899999976 68888887776665 356788999999
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHHHhhh
Q 001965 273 VDRLITELKLPPKDAYHKLRHTIEVINNHISA 304 (989)
Q Consensus 273 iD~~~~el~l~p~~~~~~l~~ii~~in~~l~~ 304 (989)
.|.+..+ + +....+.|...+..
T Consensus 168 aD~lT~~------E----l~~~K~~I~~~i~~ 189 (366)
T KOG2655|consen 168 ADTLTKD------E----LNQFKKRIRQDIEE 189 (366)
T ss_pred cccCCHH------H----HHHHHHHHHHHHHH
Confidence 9998532 2 44555666666654
No 357
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00036 Score=77.16 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=87.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCccee---ccCccceeeeeEEEEeeeeEEEeec-------------
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRY---TDTRIDEQERRISIKAVPMSLVLED------------- 205 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~---~D~~~~E~~rgiti~~~~~~~~~~~------------- 205 (989)
-|-++|.-..||||+++.|+.+.-.-.++|... .+.++ |.-..++.-.|-++-..+ ...+..
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEP-Ttd~Fi~vM~G~~e~~ipGnal~vd~-~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEP-TTDRFIAVMHGDEEGSIPGNALVVDA-KKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCC-CcceeEEEEecCcccccCCceeeecC-CCchhhhhhhHHHHHHHHH
Confidence 388999999999999999997653323333211 11111 111122222222221110 000000
Q ss_pred -CCCC---ceEEEEeeCCCcc-----------cchHHHHHHhhhcCeEEEEeecCC-CcccchHHHHHHHHHcCCCEEEE
Q 001965 206 -SNSK---SYLCNIMDSPGHV-----------NFSDEMTAALRLADGAVLIVDAAE-GVMVNTERAIRHAIQERLPIVVV 269 (989)
Q Consensus 206 -~~~~---~~~inlIDTPGh~-----------df~~ev~~alr~aD~ailVVDa~e-gv~~qt~~~l~~~~~~~ip~ilv 269 (989)
..-. -..++||||||.- +|.+-..--+..||.++|+.|+.. .+...+++++.+++...=.+-||
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVV 217 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVV 217 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEE
Confidence 0001 1358999999973 677777778889999999999874 67889999999998887889999
Q ss_pred EEcccccc
Q 001965 270 VNKVDRLI 277 (989)
Q Consensus 270 iNKiD~~~ 277 (989)
+||.|.+.
T Consensus 218 LNKADqVd 225 (532)
T KOG1954|consen 218 LNKADQVD 225 (532)
T ss_pred eccccccC
Confidence 99999984
No 358
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.46 E-value=0.00073 Score=61.99 Aligned_cols=83 Identities=23% Similarity=0.357 Sum_probs=61.9
Q ss_pred CCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEE
Q 001965 487 SGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWV 566 (989)
Q Consensus 487 ~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv 566 (989)
++||.+.|...|.....+ .+..|||.+|+++.||+|+++..+ ...+|..|... ..+++.|.||+.|
T Consensus 2 ~~p~r~~V~~vf~~~g~g-~vv~G~v~~G~i~~gd~v~i~P~~---------~~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIG-TVPVGRVETGVLKPGMVVTFAPAG---------VTGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCce-EEEEEEEecceeecCCEEEECCCC---------cEEEEEEEEEC----CcCcCEECCCCEE
Confidence 468889999888766544 588999999999999999998755 35788888744 4568999999999
Q ss_pred EEe--eccc-eeeccceeec
Q 001965 567 LIE--GVDA-SIMKSATLCN 583 (989)
Q Consensus 567 ~I~--Gld~-~~~k~~Tl~~ 583 (989)
+|. |++. .+.+|+-|++
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~ 87 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGD 87 (91)
T ss_pred EEEECCCCHHHcCCcCEEcc
Confidence 873 3322 2344555554
No 359
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.44 E-value=0.0005 Score=68.23 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=45.3
Q ss_pred HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--CCCEEEEEEccccc
Q 001965 226 DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--RLPIVVVVNKVDRL 276 (989)
Q Consensus 226 ~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip~ilviNKiD~~ 276 (989)
.++..++..+|++++|+|+..+...+...+.+.+... ++|+++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5678899999999999999999888888888887766 88999999999985
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.44 E-value=0.0003 Score=79.47 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=69.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCcc---------ceeeeeEEEEeeeeE-----EEee
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRI---------DEQERRISIKAVPMS-----LVLE 204 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~---------~E~~rgiti~~~~~~-----~~~~ 204 (989)
....|+++|..|+||||++..|...... .|.... .--.|... -...+++.+...... ..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~--Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~ 187 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA---QGKKVL--LAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFD 187 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCeEE--EEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHH
Confidence 3567999999999999999998654211 111000 00012210 011234433221100 0000
Q ss_pred ---cCCCCceEEEEeeCCCcccch----HHHHHHhh--------hcCeEEEEeecCCCcccchHHHHHHHHHc--CC-CE
Q 001965 205 ---DSNSKSYLCNIMDSPGHVNFS----DEMTAALR--------LADGAVLIVDAAEGVMVNTERAIRHAIQE--RL-PI 266 (989)
Q Consensus 205 ---~~~~~~~~inlIDTPGh~df~----~ev~~alr--------~aD~ailVVDa~egv~~qt~~~l~~~~~~--~i-p~ 266 (989)
.....++.+.||||||..... .+.....+ ..+..++|+||..|-... .++... .+ +.
T Consensus 188 ~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~-----~~a~~f~~~~~~~ 262 (318)
T PRK10416 188 AIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL-----SQAKAFHEAVGLT 262 (318)
T ss_pred HHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH-----HHHHHHHhhCCCC
Confidence 012356789999999986533 34444333 257789999999763221 223222 12 55
Q ss_pred EEEEEccccc
Q 001965 267 VVVVNKVDRL 276 (989)
Q Consensus 267 ilviNKiD~~ 276 (989)
-+++||+|..
T Consensus 263 giIlTKlD~t 272 (318)
T PRK10416 263 GIILTKLDGT 272 (318)
T ss_pred EEEEECCCCC
Confidence 7999999964
No 361
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.43 E-value=0.00047 Score=74.07 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
..+..|+|+|..++|||||+|.|+....... +.+.. ....+||-+-..+... +.+..+.++|
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~-----------~~~~~-~~~T~gi~~~~~~~~~------~~~~~v~~lD 66 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD-----------VMDTS-QQTTKGIWMWSVPFKL------GKEHAVLLLD 66 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE-----------ecCCC-CCCccceEEEeccccC------CCcceEEEEe
Confidence 4566799999999999999999976521111 11110 1223566554333211 2456799999
Q ss_pred CCCcccc------hHHHHHHhhh--cCeEEEEeecCC
Q 001965 218 SPGHVNF------SDEMTAALRL--ADGAVLIVDAAE 246 (989)
Q Consensus 218 TPGh~df------~~ev~~alr~--aD~ailVVDa~e 246 (989)
|||..+- .+....++.. +|..|+.++...
T Consensus 67 teG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 67 TEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 9998643 2334555555 999999888753
No 362
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.42 E-value=0.00018 Score=79.38 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=64.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCC--cceeccCccce--eeeeEEEEeeeeEEE--------eec
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEK--HTRYTDTRIDE--QERRISIKAVPMSLV--------LED 205 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~--~~~~~D~~~~E--~~rgiti~~~~~~~~--------~~~ 205 (989)
..+.-|.|+|.+|+|||||+++|+.....-...+ +..+ .++ .|..... -..++.+....+... +..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~-VI~gD~~t~-~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~ 179 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCA-VIEGDQQTV-NDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPR 179 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEE-EECCCcCcH-HHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHH
Confidence 4577899999999999999999986521100000 0001 011 1211100 011222222111100 011
Q ss_pred CCCCceEEEEeeCCCc-ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 206 SNSKSYLCNIMDSPGH-VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh-~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.......+.||++-|- +. -.+. -+. .+..+.|+++.+|... .+++-.....+-++++||+|++
T Consensus 180 L~~~~~d~liIEnvGnLvc-Pa~f--dlg-e~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl 243 (290)
T PRK10463 180 LPLDDNGILFIENVGNLVC-PASF--DLG-EKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLL 243 (290)
T ss_pred HhhcCCcEEEEECCCCccC-CCcc--chh-hceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcC
Confidence 1223456779999884 11 0000 011 1345688888888421 1233334456789999999997
No 363
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.41 E-value=0.00014 Score=73.60 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=26.3
Q ss_pred cHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 126 STQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 126 ~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..+.|...+.. +.++++|++|+|||||+|+|+..
T Consensus 25 g~~~l~~~l~~----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC----CEEEEECCCCCCHHHHHHHHHhh
Confidence 34555555542 57999999999999999999865
No 364
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.40 E-value=0.00017 Score=72.89 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
-.+|+++|.+|+|||||+|+|+....
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 34699999999999999999976543
No 365
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.40 E-value=0.00047 Score=75.44 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=75.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.....|+++|..|+|||||+++|-. +.... .+.-...+| .+.-...++ .+..+.+.|
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~-Aal~p-----~drLFATLD-------------pT~h~a~Lp----sg~~vlltD 232 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTK-AALYP-----NDRLFATLD-------------PTLHSAHLP----SGNFVLLTD 232 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHh-hhcCc-----cchhheecc-------------chhhhccCC----CCcEEEEee
Confidence 3456799999999999999999952 22111 111122222 222222222 334578999
Q ss_pred CCCccc-c-------hHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcCCC-------EEEEEEcccccc
Q 001965 218 SPGHVN-F-------SDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQERLP-------IVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~d-f-------~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~ip-------~ilviNKiD~~~ 277 (989)
|-|+.. + ...+..-+..||..|-|+|.++.. ..|-+.++..+...++| +|=|-||+|...
T Consensus 233 TvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 233 TVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred chhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 999753 1 123344556799999999999754 67778888888888885 455667777653
No 366
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00028 Score=67.09 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=65.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC-
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG- 220 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG- 220 (989)
.|+++|.+++|||||+.+|....- .|- +...+ .| ++ =..|||||
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~-------------lyk-------------KTQAv--e~-----~d--~~~IDTPGE 47 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT-------------LYK-------------KTQAV--EF-----ND--KGDIDTPGE 47 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh-------------hhc-------------cccee--ec-----cC--ccccCCchh
Confidence 589999999999999999943211 000 01111 11 11 12799999
Q ss_pred ---cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 ---HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 ---h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|..+.......+..+|.+++|-.+.++.+.-.-.. +.-...|.|-+++|.|+.
T Consensus 48 y~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 48 YFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLA 103 (148)
T ss_pred hhhhhHHHHHHHHHhhccceeeeeecccCccccCCccc---ccccccceEEEEeccccc
Confidence 45566667778888999999999998765433222 222344799999999997
No 367
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.35 E-value=0.00088 Score=66.38 Aligned_cols=114 Identities=14% Similarity=0.192 Sum_probs=72.6
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
..++|..-+|||+|+..+- .|....+....-| .|+. .|-|.++ .+...++.|+||+|+.
T Consensus 11 livigdstvgkssll~~ft--~gkfaelsdptvg----vdff----arlie~~-----------pg~riklqlwdtagqe 69 (213)
T KOG0091|consen 11 LIVIGDSTVGKSSLLRYFT--EGKFAELSDPTVG----VDFF----ARLIELR-----------PGYRIKLQLWDTAGQE 69 (213)
T ss_pred EEEEcCCcccHHHHHHHHh--cCcccccCCCccc----hHHH----HHHHhcC-----------CCcEEEEEEeeccchH
Confidence 6689999999999999773 3333322111111 1221 1111111 1234458899999999
Q ss_pred cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--C----CCEEEEEEcccccc
Q 001965 223 NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--R----LPIVVVVNKVDRLI 277 (989)
Q Consensus 223 df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~----ip~ilviNKiD~~~ 277 (989)
.|.+-+.+..|.+-|+++|.|.+.--...-...|-.-.+. + +-+.+|..|.|+..
T Consensus 70 rfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 70 RFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 9999999999999999999999865443333333221122 2 23577889999874
No 368
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.31 E-value=0.00021 Score=68.15 Aligned_cols=70 Identities=24% Similarity=0.290 Sum_probs=55.1
Q ss_pred CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HH---HHHcCCCEEEEEEccccc
Q 001965 207 NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RH---AIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 207 ~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~---~~~~~ip~ilviNKiD~~ 276 (989)
+++..++.++||+|+..|.+-+.+..|.+|..+|+.|....-.....+.| .+ -.++.+.+.++.||+|..
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 45778899999999999999999999999999999998865443332222 22 234567889999999986
No 369
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.24 E-value=0.003 Score=62.61 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=49.0
Q ss_pred eEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--CCCEEEEEEccccc
Q 001965 211 YLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--RLPIVVVVNKVDRL 276 (989)
Q Consensus 211 ~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip~ilviNKiD~~ 276 (989)
|.+.+||||+.. ......++..||.+++|+++...-...+...++.+... ..++.+++|+++..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 678999999875 45567899999999999998865555566666666433 34788999999754
No 370
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.21 E-value=0.003 Score=59.37 Aligned_cols=96 Identities=16% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCCeEEEEEeeeccC-------CCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccc
Q 001965 487 SGPLMVNVTKLYPKS-------DCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISS 559 (989)
Q Consensus 487 ~~pl~~~V~K~~~~~-------~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~ 559 (989)
+.|+.++|...|... +..+-++-|+|.+|+|+.||+|.+..--... ++.......+..-.+..-.....+++
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~-~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVK-DEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeee-cCCCeeEEEEEEEEEEEEecCccccE
Confidence 445556666665432 1223389999999999999999886321111 11112222222222222244567899
Q ss_pred cCCCCEEEE-eeccceeeccceeec
Q 001965 560 APPGSWVLI-EGVDASIMKSATLCN 583 (989)
Q Consensus 560 a~AGnIv~I-~Gld~~~~k~~Tl~~ 583 (989)
|.||+.++| ++||.+++|.+.++.
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~G 106 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVG 106 (113)
T ss_pred EeCCCeEEEccccCccccccceeeE
Confidence 999999999 569999999888775
No 371
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.20 E-value=0.0024 Score=57.38 Aligned_cols=65 Identities=26% Similarity=0.379 Sum_probs=49.7
Q ss_pred CeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE
Q 001965 489 PLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI 568 (989)
Q Consensus 489 pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I 568 (989)
||.+.|...|... +.+..|||.+|++++||+|++...+ ...+|..+... ..++++|.|||.|++
T Consensus 1 plr~~I~~v~~~~---g~vv~G~v~~G~i~~G~~v~i~P~~---------~~~~V~si~~~----~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM---GTVVLGKVESGTIKKGDKLLVMPNK---------TQVEVLSIYNE----DVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC---CEEEEEEEeeeEEecCCEEEEeCCC---------cEEEEEEEEEC----CEECCEECCCCEEEE
Confidence 4556666666432 4588999999999999999998654 35678887643 467899999999988
Q ss_pred e
Q 001965 569 E 569 (989)
Q Consensus 569 ~ 569 (989)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 3
No 372
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.18 E-value=0.00076 Score=68.12 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--CCCEEEEEEccccc
Q 001965 228 MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--RLPIVVVVNKVDRL 276 (989)
Q Consensus 228 v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip~ilviNKiD~~ 276 (989)
+.+++..+|.+++|+|+..+.......+.+.+... ++|+|+|+||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 46789999999999999998777777777777653 48999999999996
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.18 E-value=0.00042 Score=72.88 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=41.2
Q ss_pred CceEEEEeeCCCcccchHHH----HHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEM----TAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev----~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+++.+.||||||......+. ..-++ ..+-++||+|+..+-... ..+.+.....++. =++++|+|-.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCC
Confidence 34679999999986654432 22222 457899999999874322 2333443444444 5669999986
No 374
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.17 E-value=0.00075 Score=79.18 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=42.1
Q ss_pred ceEEEEeeCCCcccchHHH------HHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--CCC-EEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEM------TAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--RLP-IVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev------~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip-~ilviNKiD~~ 276 (989)
.+.+.||||||........ ..++..+|.++||+|+..|- ..+.++... .++ .-+++||+|-.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 3478999999987655443 24455689999999998872 233444332 244 36788999964
No 375
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.17 E-value=0.00039 Score=72.30 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+.++|+|...+|||.|+.++ .++... ..|.-+-.+...-.+++. +++...+.|+||.|
T Consensus 5 ~K~VvVGDga~GKT~ll~~~--t~~~fp---------~~yvPTVFdnys~~v~V~-----------dg~~v~L~LwDTAG 62 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISY--TTNAFP---------EEYVPTVFDNYSANVTVD-----------DGKPVELGLWDTAG 62 (198)
T ss_pred eEEEEECCCCcCceEEEEEe--ccCcCc---------ccccCeEEccceEEEEec-----------CCCEEEEeeeecCC
Confidence 46899999999999998654 233222 111111111111111110 35677799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccc--hHHHHHHHHH--cCCCEEEEEEccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVN--TERAIRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~q--t~~~l~~~~~--~~ip~ilviNKiD~~ 276 (989)
..+|..-..-+.+.+|..|++.+....-... ....+-.+.. -++|+|+|.+|.|+-
T Consensus 63 qedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 63 QEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred CcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 9999775555888999999988876533211 1112222222 468999999999986
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=97.15 E-value=0.00067 Score=76.98 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=40.4
Q ss_pred CceEEEEeeCCCcccch----HHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHc--CC-CEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFS----DEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQE--RL-PIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~----~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~--~i-p~ilviNKiD~~ 276 (989)
.++.+.||||||..... .++..-.+ ..|..+||+|+..|- ..+.++... .+ .--+++||+|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 35669999999986433 33332222 368999999998762 223333322 12 467889999986
No 377
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0012 Score=78.23 Aligned_cols=132 Identities=23% Similarity=0.216 Sum_probs=65.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCcc---cee------eeeEEEEeeeeEEEeec--CCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRI---DEQ------ERRISIKAVPMSLVLED--SNS 208 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~---~E~------~rgiti~~~~~~~~~~~--~~~ 208 (989)
-.+|+|+|..|+||||++..|........ .|... ..-.+|... .|+ .-++.+....-.-.+.. .+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkV--aLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDV--ALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCce--EEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh
Confidence 46899999999999999998864311000 00000 001112211 011 11222211100000000 012
Q ss_pred CceEEEEeeCCCcccchHHHHH---Hhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTA---ALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~---alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.||||||.......... .++ .....+|||++..+..... .+++..... .+.-+++||+|..
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 4578999999997644333221 111 1345688899886543332 334433332 3678999999985
No 378
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0026 Score=69.65 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred cHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhc---Cc----c-cccCCCCCCcceeccCcccee---eeeEEE
Q 001965 126 STQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQT---HH----M-STFDPNSEKHTRYTDTRIDEQ---ERRISI 194 (989)
Q Consensus 126 ~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~---~~----i-~~~g~~~~~~~~~~D~~~~E~---~rgiti 194 (989)
+++-|..++....+--.|+|.|.+|+|||||++.|...- |. + ....+...|+.-.-|...... ..++-|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFi 116 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFI 116 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEE
Confidence 346666777666666679999999999999999996432 11 0 001122222222222221111 123333
Q ss_pred EeeeeEEEeec-----------CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcC
Q 001965 195 KAVPMSLVLED-----------SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQER 263 (989)
Q Consensus 195 ~~~~~~~~~~~-----------~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ 263 (989)
.+.+..=.... ++.-+|.+.||-|-|--.-.- .-...+|..++|.=+.-|-..|.... --..
T Consensus 117 Rs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimE 189 (323)
T COG1703 117 RSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA----GIME 189 (323)
T ss_pred eecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh----hhhh
Confidence 33222111100 233468899999998644221 23467899998887777766665421 1122
Q ss_pred CCEEEEEEcccccccc
Q 001965 264 LPIVVVVNKVDRLITE 279 (989)
Q Consensus 264 ip~ilviNKiD~~~~e 279 (989)
+-=|+||||.|+...+
T Consensus 190 iaDi~vINKaD~~~A~ 205 (323)
T COG1703 190 IADIIVINKADRKGAE 205 (323)
T ss_pred hhheeeEeccChhhHH
Confidence 3559999999988654
No 379
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.07 E-value=0.0035 Score=70.93 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=74.1
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCc------ccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec-------
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHH------MSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED------- 205 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~------i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------- 205 (989)
+|+...|.|..|+|||||+++|+...+. ..++|...--.....+ ....-+++..+++.+....
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~----~~~~v~eL~~GCiCCs~~~~l~~~l~ 78 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD----RATQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhC----cCceEEEECCCEEEEccCchHHHHHH
Confidence 5777899999999999999999965321 1223322110000100 0112344555555554322
Q ss_pred --C---CC--CceEEEEeeCCCcccchHHHHHHh---------hhcCeEEEEeecCCCcccch--HHHHHHHHHcCCCEE
Q 001965 206 --S---NS--KSYLCNIMDSPGHVNFSDEMTAAL---------RLADGAVLIVDAAEGVMVNT--ERAIRHAIQERLPIV 267 (989)
Q Consensus 206 --~---~~--~~~~inlIDTPGh~df~~ev~~al---------r~aD~ailVVDa~egv~~qt--~~~l~~~~~~~ip~i 267 (989)
. +. ......+|-|-|..+-. .+..++ -..|++|-|||+..+..... .....|+.. .=+
T Consensus 79 ~l~~~~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~ 154 (318)
T PRK11537 79 DLLDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADR 154 (318)
T ss_pred HHHHHHhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCE
Confidence 0 00 13567899999988733 223222 13489999999987543211 112223322 458
Q ss_pred EEEEcccccc
Q 001965 268 VVVNKVDRLI 277 (989)
Q Consensus 268 lviNKiD~~~ 277 (989)
|++||+|+..
T Consensus 155 IvlnK~Dl~~ 164 (318)
T PRK11537 155 ILLTKTDVAG 164 (318)
T ss_pred EEEeccccCC
Confidence 9999999983
No 380
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.07 E-value=0.00074 Score=68.07 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
...+++++|++|+|||||+|+|+...
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45679999999999999999997643
No 381
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.06 E-value=0.0037 Score=71.39 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=59.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcc------cccCCCCCCcceeccCcc--ceeeeeEEEEeeeeEEEeec-----
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHM------STFDPNSEKHTRYTDTRI--DEQERRISIKAVPMSLVLED----- 205 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i------~~~g~~~~~~~~~~D~~~--~E~~rgiti~~~~~~~~~~~----- 205 (989)
+|+-..|.|..|+|||||+++|+...+.. .++|...-......+... ...+.-+.+..+++.+...+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 45668899999999999999998653211 123322110000000000 00112334444444443221
Q ss_pred ---C--CCCceEEEEeeCCCcccchHHHHHHh--------hhcCeEEEEeecCCCc
Q 001965 206 ---S--NSKSYLCNIMDSPGHVNFSDEMTAAL--------RLADGAVLIVDAAEGV 248 (989)
Q Consensus 206 ---~--~~~~~~inlIDTPGh~df~~ev~~al--------r~aD~ailVVDa~egv 248 (989)
. ........+|.|.|..+-..-+ ..+ -..|++|-|||+....
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~~i~-~~~~~~~l~~~~~l~~vvtvVDa~~~~ 137 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPKPLV-QAFQWPEIRSRVTVDGVVTVVDGPAVA 137 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHHHHH-HHhcCccccceEEeeeEEEEEECchhh
Confidence 0 1234567899999998754333 222 2468999999998643
No 382
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.06 E-value=0.0052 Score=62.87 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=51.0
Q ss_pred EEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 212 LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
.+.||||||..+ .....++..||.+|+|+++...-...+..+++.+...+.+ ..+++|++|.-
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 589999998755 4577889999999999999887777777777777766654 67899999875
No 383
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.02 E-value=0.0014 Score=64.46 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=87.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|....|||||+-..+.....-. .....+..++| +.+++..+ ...+.++|.-|.
T Consensus 22 kv~llGD~qiGKTs~mvkYV~~~~de~---~~q~~GvN~md-------kt~~i~~t------------~IsfSIwdlgG~ 79 (205)
T KOG1673|consen 22 KVGLLGDAQIGKTSLMVKYVQNEYDEE---YTQTLGVNFMD-------KTVSIRGT------------DISFSIWDLGGQ 79 (205)
T ss_pred EEEeecccccCceeeehhhhcchhHHH---HHHHhCcccee-------eEEEecce------------EEEEEEEecCCc
Confidence 489999999999999977654322100 00000112222 22333332 334679999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHHcCC--CEEEEEEcccccccccCCCchHHHHHHHHHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQERL--PIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVI 298 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~~~i--p~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~i 298 (989)
.+|.+...-|...+-.++++.|.....+.... +..+||+..+. -.|++.+|.|..+ .|||+.. ..+..+.
T Consensus 80 ~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi---~lp~e~Q----~~I~~qa 152 (205)
T KOG1673|consen 80 REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI---DLPPELQ----ETISRQA 152 (205)
T ss_pred HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh---cCCHHHH----HHHHHHH
Confidence 99999999899999999999998876555544 34467776654 3578999999984 6777653 2355666
Q ss_pred HHHhhh
Q 001965 299 NNHISA 304 (989)
Q Consensus 299 n~~l~~ 304 (989)
+.+-+.
T Consensus 153 r~YAk~ 158 (205)
T KOG1673|consen 153 RKYAKV 158 (205)
T ss_pred HHHHHH
Confidence 655543
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=97.02 E-value=0.00079 Score=76.92 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.++++|.+|+|||||+|+|+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 38999999999999999998543
No 385
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.99 E-value=0.001 Score=69.35 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.+++++|.+|+|||||+|+|+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998654
No 386
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.97 E-value=0.00082 Score=69.26 Aligned_cols=127 Identities=19% Similarity=0.162 Sum_probs=63.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceec--cCc-----cceeeeeEEEEeee---eEEEeec----
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYT--DTR-----IDEQERRISIKAVP---MSLVLED---- 205 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~--D~~-----~~E~~rgiti~~~~---~~~~~~~---- 205 (989)
++.|.+.|++|||||||+.+++..-+.--+++ +..+ --|+ |.. ..++..++.....+ .++....
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~a-VI~~-Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l 90 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIA-VITG-DIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEEL 90 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeE-EEec-eeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHH
Confidence 57899999999999999999875432111000 0011 1111 211 22222333222111 1111100
Q ss_pred -CCCCceEEEEeeCCCcccchHHHHHHhhhcC-eEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 206 -SNSKSYLCNIMDSPGHVNFSDEMTAALRLAD-GAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 206 -~~~~~~~inlIDTPGh~df~~ev~~alr~aD-~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.......+.||-+.| ++.. ..+.-..| .-|+|||+.+|.-.--+- .=.-.+ .=++||||.|+.
T Consensus 91 ~~~~~~~Dll~iEs~G--NL~~--~~sp~L~d~~~v~VidvteGe~~P~K~---gP~i~~-aDllVInK~DLa 155 (202)
T COG0378 91 VLDFPDLDLLFIESVG--NLVC--PFSPDLGDHLRVVVIDVTEGEDIPRKG---GPGIFK-ADLLVINKTDLA 155 (202)
T ss_pred hhcCCcCCEEEEecCc--ceec--ccCcchhhceEEEEEECCCCCCCcccC---CCceeE-eeEEEEehHHhH
Confidence 011224688999998 3221 11233456 889999999985221100 000000 238999999997
No 387
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.95 E-value=0.0015 Score=67.30 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
..|+++|.+|+|||||+|+|....
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc
Confidence 469999999999999999997543
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.0025 Score=74.77 Aligned_cols=63 Identities=30% Similarity=0.425 Sum_probs=38.6
Q ss_pred CceEEEEeeCCCcccchHHHH----HHh--hhcCeEEEEeecCCCcccchHHHHHHHHH--cCCC-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMT----AAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQ--ERLP-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~----~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~--~~ip-~ilviNKiD~~ 276 (989)
.++.+.||||||......... ... ...|.+++|+|+..| ...++++.. ..++ .-+++||+|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g-----q~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG-----QDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH-----HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 457899999999654333222 222 245788999998754 223333332 2343 36788999954
No 389
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.92 E-value=0.00076 Score=77.68 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
++|+++|.+|+|||||+|+|+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999998654
No 390
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.90 E-value=0.0016 Score=64.56 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.++++|.+|+|||||+++|+...
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999997543
No 391
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.85 E-value=0.0048 Score=57.53 Aligned_cols=82 Identities=21% Similarity=0.136 Sum_probs=53.5
Q ss_pred EEEEc-CCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 143 VALVG-HLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 143 I~IiG-h~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
|++.| ..|+||||++-.|...-.. .| ......|... .+.+.+||||+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~---~~----~~vl~~d~d~------------------------~~d~viiD~p~~ 50 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR---RG----KRVLLIDLDP------------------------QYDYIIIDTPPS 50 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh---CC----CcEEEEeCCC------------------------CCCEEEEeCcCC
Confidence 55666 6799999999888643221 00 1122222221 156899999997
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR 257 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~ 257 (989)
.+ .....++..||.+++++++...-...+.++++
T Consensus 51 ~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 51 LG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 64 45568999999999999987654445555544
No 392
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.83 E-value=0.0024 Score=66.10 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=64.6
Q ss_pred eEEEEcCCCCChHHHHHHHHh-hcC-----cc-cccCCCCCCcceeccCcccee--eeeEEEEeeeeEEEeec-------
Q 001965 142 NVALVGHLHHGKTVFMDMLIE-QTH-----HM-STFDPNSEKHTRYTDTRIDEQ--ERRISIKAVPMSLVLED------- 205 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~-~~~-----~i-~~~g~~~~~~~~~~D~~~~E~--~rgiti~~~~~~~~~~~------- 205 (989)
.+.|.|..|||||||+++|+. ... .+ .++|. .. .|....+. ..-..+..+.+.+....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~-----~~-iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~ 75 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGE-----VN-IDAELLQEDGVPVVELNNGCICCTLRDDLVEALR 75 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTS-----TH-HHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccc-----cc-cchhhhcccceEEEEecCCCcccccHHHHHHHHH
Confidence 367999999999999999993 211 11 11221 11 11111110 11223333333322110
Q ss_pred --CCCC--ceEEEEeeCCCcccchHH-----HHHHhhhcCeEEEEeecCCCcc-cch-HHHHHHHHHcCCCEEEEEEccc
Q 001965 206 --SNSK--SYLCNIMDSPGHVNFSDE-----MTAALRLADGAVLIVDAAEGVM-VNT-ERAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 206 --~~~~--~~~inlIDTPGh~df~~e-----v~~alr~aD~ailVVDa~egv~-~qt-~~~l~~~~~~~ip~ilviNKiD 274 (989)
.... ...+.||-|.|..+...- .....-..+.+|.|||+..-.. ... ..+..| -...=++++||+|
T Consensus 76 ~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Q---i~~ADvIvlnK~D 152 (178)
T PF02492_consen 76 RLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQ---IAFADVIVLNKID 152 (178)
T ss_dssp HHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHH---HCT-SEEEEE-GG
T ss_pred HHHHhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhc---chhcCEEEEeccc
Confidence 1122 456889999997654333 2223345689999999965311 111 122222 3334589999999
Q ss_pred ccc
Q 001965 275 RLI 277 (989)
Q Consensus 275 ~~~ 277 (989)
+..
T Consensus 153 ~~~ 155 (178)
T PF02492_consen 153 LVS 155 (178)
T ss_dssp GHH
T ss_pred cCC
Confidence 984
No 393
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.81 E-value=0.0033 Score=73.21 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=27.1
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcc
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHM 167 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i 167 (989)
+..+++|+|+|+.++|||||+++|....+..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 6778999999999999999999998775543
No 394
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.79 E-value=0.0013 Score=71.70 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.++++|++|+|||||+|+|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 36899999999999999999854
No 395
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0023 Score=73.30 Aligned_cols=131 Identities=20% Similarity=0.110 Sum_probs=66.0
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCc---cceee------eeEEEEeee--eEEE--eec
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTR---IDEQE------RRISIKAVP--MSLV--LED 205 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~---~~E~~------rgiti~~~~--~~~~--~~~ 205 (989)
..+.|+++|+.|+||||++..|..... ..|... ..-.+|+. ..|+- -|+.+.... ..+. +..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkV--glI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTV--GFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcE--EEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence 347899999999999999999964321 101000 01111221 11111 112221100 0000 000
Q ss_pred CC-CCceEEEEeeCCCcccchH----HHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 206 SN-SKSYLCNIMDSPGHVNFSD----EMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 206 ~~-~~~~~inlIDTPGh~df~~----ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.+ ..++.+.||||||...... ++.+.++ ..|-++||+||.-+-.. ...+++.....+ .-=++++|+|-.
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~~~~-idglI~TKLDET 390 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKDIH-IDGIVFTKFDET 390 (436)
T ss_pred HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhcCCC-CCEEEEEcccCC
Confidence 11 1246799999999865433 3434333 24678999998644211 122333333222 346788999986
No 396
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.71 E-value=0.0027 Score=67.26 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=55.9
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|+++|.+.+|||||+..+-. ++ + ..+. ..| .|...-+--+.+ ++..|.++|.||.+
T Consensus 65 ValIGfPSVGKStlLs~iT~-T~--S----eaA~-yeF-----------TTLtcIpGvi~y-----~ga~IQllDLPGIi 120 (364)
T KOG1486|consen 65 VALIGFPSVGKSTLLSKITS-TH--S----EAAS-YEF-----------TTLTCIPGVIHY-----NGANIQLLDLPGII 120 (364)
T ss_pred EEEecCCCccHHHHHHHhhc-ch--h----hhhc-eee-----------eEEEeecceEEe-----cCceEEEecCcccc
Confidence 99999999999999988832 22 1 1111 111 133333333444 56679999999987
Q ss_pred cc-------hHHHHHHhhhcCeEEEEeecCCC
Q 001965 223 NF-------SDEMTAALRLADGAVLIVDAAEG 247 (989)
Q Consensus 223 df-------~~ev~~alr~aD~ailVVDa~eg 247 (989)
.= ...+++..|.||.+++|+||..+
T Consensus 121 eGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 121 EGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 53 23577889999999999999875
No 397
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.69 E-value=0.0023 Score=74.90 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=39.1
Q ss_pred CceEEEEeeCCCcccchHHHHHHh------hhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAAL------RLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~al------r~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~~ 276 (989)
.++.+.||||||...........+ ...|.+++|+|+..|- ......+... ..+ ..=+++||+|..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f~-~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTFN-ERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHHH-hhCCCCEEEEeCccCc
Confidence 457799999999754433333222 2468999999997551 2222222222 223 246679999954
No 398
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.69 E-value=0.0015 Score=72.18 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..+++|++|+|||||+|+|+-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 578999999999999999974
No 399
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.65 E-value=0.0031 Score=70.45 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.++++|++|+|||||+++|+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 579999999999999999997543
No 400
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.65 E-value=0.0067 Score=69.37 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=55.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC-cccccCCCCCCcceeccCccceeeeeEEEEeeee----EEEeecCCCCceEEEE
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH-HMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM----SLVLEDSNSKSYLCNI 215 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~-~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~----~~~~~~~~~~~~~inl 215 (989)
.+++|+|-+++|||||.++|..... ... .| .+.-.+...|+-.-...- .-.++..+-....+.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a----------~y-pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~ 71 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA----------NP-PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF 71 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccC----------CC-CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence 3599999999999999999954322 111 01 000011112221100000 0000011112346889
Q ss_pred eeCCCccc-------chHHHHHHhhhcCeEEEEeecCC
Q 001965 216 MDSPGHVN-------FSDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 216 IDTPGh~d-------f~~ev~~alr~aD~ailVVDa~e 246 (989)
+|.||.+. +.....+-+|.+|+.++|||+.+
T Consensus 72 ~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 72 VDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred EeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99999865 55678889999999999999964
No 401
>PRK12289 GTPase RsgA; Reviewed
Probab=96.65 E-value=0.0019 Score=73.98 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.++|+|.+|+|||||+|+|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 38999999999999999998543
No 402
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.64 E-value=0.0036 Score=69.48 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..+|+++|.+|+|||||+|+|...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999754
No 403
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.64 E-value=0.0057 Score=61.54 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=25.2
Q ss_pred HHhhccCCCCcceEEEEcCCCCChHHHHHHHHh
Q 001965 130 LVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 130 l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+..++......++++++|.+++|||||+++|..
T Consensus 91 l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 91 IKELAKIDGKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred HHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 333343444566789999999999999999974
No 404
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.63 E-value=0.011 Score=53.11 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=46.6
Q ss_pred EEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 493 NVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 493 ~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
.|...|..... +.+..|||.+|++++|++|.++..+ ...+|..+... ..++++|.|||-|+|.
T Consensus 4 ~i~~~~~~~~~-g~vv~G~v~sG~i~~g~~v~~~p~~---------~~~~V~sI~~~----~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 4 PIDRVFTVKGQ-GTVVTGTVLSGSVKVGDKVEILPLG---------EETRVRSIQVH----GKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEcCCc-EEEEEEEEeecEEeCCCEEEECCCC---------ceEEEEEEEEC----CcCcCEEcCCCEEEEE
Confidence 34444433433 4588999999999999999997654 35678887643 5678999999999883
No 405
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.62 E-value=0.0036 Score=62.95 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=42.4
Q ss_pred HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 226 DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 226 ~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
......++.+|++|+|+|+.++...+...+.+.+...+.|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345566778999999999998887777777777767789999999999985
No 406
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.61 E-value=0.0046 Score=63.44 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...+++++|.+|+|||||+++|...
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999754
No 407
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.60 E-value=0.011 Score=55.83 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=46.6
Q ss_pred EEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC----CEEEEEEc
Q 001965 212 LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL----PIVVVVNK 272 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i----p~ilviNK 272 (989)
.+.+||||+..+ .....++..||.+|+|++....-...+.+.++.+.+.+. ++.+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 588999999765 446678999999999999988777777777777766553 56788885
No 408
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.59 E-value=0.0033 Score=71.29 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHM 167 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i 167 (989)
..+.|+|-+|+|||||+|+|+....+.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~ 159 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAK 159 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhccccee
Confidence 349999999999999999998766533
No 409
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.0037 Score=71.42 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+-+.|+++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998643
No 410
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0039 Score=70.38 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=55.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEe---ec--CCCCceEEEEe
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVL---ED--SNSKSYLCNIM 216 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~---~~--~~~~~~~inlI 216 (989)
.++|+|-+|+|||||.++|-.....+. .- .+...|-..|+.--..+---.+ .. .+.....+.|+
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~~a~~a------NY-----PF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~v 72 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKAGAEIA------NY-----PFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFV 72 (372)
T ss_pred eeEEecCCCCcHHHHHHHHHcCCcccc------CC-----CcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEE
Confidence 499999999999999999954331111 00 1111122222211110000000 00 01122457899
Q ss_pred eCCCccc-------chHHHHHHhhhcCeEEEEeecCC
Q 001965 217 DSPGHVN-------FSDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 217 DTPGh~d-------f~~ev~~alr~aD~ailVVDa~e 246 (989)
|.+|.+. +......-+|.+|+++.||||.+
T Consensus 73 DIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 73 DIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 9999864 55677889999999999999984
No 411
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.0031 Score=61.45 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=77.9
Q ss_pred HHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCC
Q 001965 129 FLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNS 208 (989)
Q Consensus 129 ~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~ 208 (989)
+++.|.. |++--.|-|+|--|+||||++=+|- .+... .. .-|+.-++-++. +
T Consensus 8 ~f~~L~g-~e~e~rililgldGaGkttIlyrlq--vgevv------tt--------------kPtigfnve~v~-----y 59 (182)
T KOG0072|consen 8 LFKALQG-PEREMRILILGLDGAGKTTILYRLQ--VGEVV------TT--------------KPTIGFNVETVP-----Y 59 (182)
T ss_pred HHHHhcC-CccceEEEEeeccCCCeeEEEEEcc--cCccc------cc--------------CCCCCcCccccc-----c
Confidence 3444444 3333348899999999999876552 11111 00 012222222232 3
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|+-+++++|.-|.-....-........|.+|.|||..+-....+. ++...+.+ .+..+++|.||+|...
T Consensus 60 KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG 133 (182)
T ss_pred ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh
Confidence 778899999999999889999999999999999999875433322 22222322 2457899999999874
No 412
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.52 E-value=0.0067 Score=63.76 Aligned_cols=118 Identities=16% Similarity=0.239 Sum_probs=73.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
-|.|.+.|..|+|||++=..+...-.+. |+ +.-|-||......+.+ -.+..+|++|+-
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~--------------D~----~rlg~tidveHsh~Rf----lGnl~LnlwDcG 61 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR--------------DT----RRLGATIDVEHSHVRF----LGNLVLNLWDCG 61 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh--------------hh----hccCCcceeeehhhhh----hhhheeehhccC
Confidence 3679999999999999876654221111 11 1222333322222211 034568999999
Q ss_pred CcccchHHHH-----HHhhhcCeEEEEeecCCCcccchHHH----HHHHHHc--CCCEEEEEEcccccccc
Q 001965 220 GHVNFSDEMT-----AALRLADGAVLIVDAAEGVMVNTERA----IRHAIQE--RLPIVVVVNKVDRLITE 279 (989)
Q Consensus 220 Gh~df~~ev~-----~alr~aD~ailVVDa~egv~~qt~~~----l~~~~~~--~ip~ilviNKiD~~~~e 279 (989)
|...|+..-. .-++..+..+.|.|+...-...+... ++.+.+. ...+.+.+.|+|++-.+
T Consensus 62 gqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 62 GQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred CcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 9998776554 46788999999999986544333333 3333333 23688999999998655
No 413
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.51 E-value=0.0059 Score=66.35 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=80.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcc------cccCCCCCCcceeccCccceeeee------EEEEeeeeEEEeec
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHM------STFDPNSEKHTRYTDTRIDEQERR------ISIKAVPMSLVLED 205 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i------~~~g~~~~~~~~~~D~~~~E~~rg------iti~~~~~~~~~~~ 205 (989)
.+|+.-.|.|..|+|||||++.++...|.. .++|...+-.. ....+++-| +-...+++.+...+
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~----sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEK----SLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhH----HHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 567778899999999999999998654321 22332111000 000001011 01112222232211
Q ss_pred ---------C-CCCceEEEEeeCCCcccchH--------HHHHHhhhcCeEEEEeecCCCcccch----HHHHHHH-HHc
Q 001965 206 ---------S-NSKSYLCNIMDSPGHVNFSD--------EMTAALRLADGAVLIVDAAEGVMVNT----ERAIRHA-IQE 262 (989)
Q Consensus 206 ---------~-~~~~~~inlIDTPGh~df~~--------ev~~alr~aD~ailVVDa~egv~~qt----~~~l~~~-~~~ 262 (989)
. +...+...+|.|-|..+=.. +-..+---.||+|-||||.+...--+ .-+|..| .+-
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi 210 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI 210 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH
Confidence 0 12345678999999887221 22222234699999999976421110 1112111 111
Q ss_pred CCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHHHHhh
Q 001965 263 RLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHIS 303 (989)
Q Consensus 263 ~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~ 303 (989)
...=.+++||.|+.. .+.-.++++.+..||.+-.
T Consensus 211 A~AD~II~NKtDli~-------~e~~~~l~q~I~~INslA~ 244 (391)
T KOG2743|consen 211 ALADRIIMNKTDLVS-------EEEVKKLRQRIRSINSLAQ 244 (391)
T ss_pred hhhheeeeccccccC-------HHHHHHHHHHHHHhhhHHH
Confidence 112357899999985 3455566666677776543
No 414
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.46 E-value=0.015 Score=52.07 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=41.3
Q ss_pred eeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE
Q 001965 506 FDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI 568 (989)
Q Consensus 506 ~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I 568 (989)
....|||.+|+++.||+|+++..+ ...+|..+... ..+++.|.|||.|+|
T Consensus 16 ~~v~Gkv~~G~v~~Gd~v~~~P~~---------~~~~V~si~~~----~~~~~~a~aGd~v~l 65 (81)
T cd03695 16 RGYAGTIASGSIRVGDEVVVLPSG---------KTSRVKSIETF----DGELDEAGAGESVTL 65 (81)
T ss_pred EEEEEEEccceEECCCEEEEcCCC---------CeEEEEEEEEC----CcEeCEEcCCCEEEE
Confidence 468999999999999999998755 35678887643 567899999999988
No 415
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.46 E-value=0.0057 Score=68.31 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..+|+++|.+|+|||||+|+|...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999754
No 416
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.43 E-value=0.0037 Score=63.89 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=52.9
Q ss_pred CceEEEEeeCCCcccchHHHHHHh--hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKiD~~ 276 (989)
..|.+.|+|||+... +.....+ ..+|.+|+|+.+...-...+.+.++.+.+.++++ -+++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 568899999999753 4444444 6899999999988777778888899999888876 4789999864
No 417
>PRK13796 GTPase YqeH; Provisional
Probab=96.41 E-value=0.0046 Score=71.40 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.9
Q ss_pred ccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 125 VSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 125 ~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+..+.+.+.+..-..-+++.++|.+|+|||||+|+|+..
T Consensus 145 ~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 145 HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhh
Confidence 344444443322112358999999999999999999854
No 418
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.40 E-value=0.013 Score=53.27 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=45.8
Q ss_pred EEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 494 VTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 494 V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
|...|..... +.+..|||.+|+++.||+|.+++.+. ....+|..|.. ...++++|.||+-|+|.
T Consensus 5 V~~v~~~~g~-G~vv~G~v~~G~v~~gd~v~~~p~~~-------~~~~~V~si~~----~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 5 IEDVFSIPGR-GTVVTGRIERGTIKVGDEVEIVGFGE-------TLKTTVTGIEM----FRKTLDEAEAGDNVGVL 68 (87)
T ss_pred EEEEEeCCCc-EEEEEEEECCCCCccCCEEEEeCCCC-------CceEEEEEEEE----CCcCCCEECCCCEEEEE
Confidence 3344433433 45789999999999999999986421 13467777753 35678999999999884
No 419
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.37 E-value=0.0081 Score=60.52 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=34.1
Q ss_pred CeEEEEeecCCCcccchHHHH-HHHHHcCCCEEEEEEccccc
Q 001965 236 DGAVLIVDAAEGVMVNTERAI-RHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 236 D~ailVVDa~egv~~qt~~~l-~~~~~~~ip~ilviNKiD~~ 276 (989)
|.+|+|+|+.++.......+. ..+...++|+|+|+||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999988777766665 45667789999999999985
No 420
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=6.6e-06 Score=97.76 Aligned_cols=195 Identities=3% Similarity=-0.234 Sum_probs=128.3
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec-CCCCceEE
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED-SNSKSYLC 213 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~-~~~~~~~i 213 (989)
++.+.|+ +.--|.++||++++.+.......+. -..++..++.+....+++++.++....+...... .......-
T Consensus 175 ~~~~~i~--d~~~~F~p~kgNVif~~A~~~~~f~---~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~~~~~~~ 249 (887)
T KOG0467|consen 175 DNWENIE--DEEITFGPEDGNVIFASALDGWGFG---IEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRICEGKKLK 249 (887)
T ss_pred chhhhhh--hcceeecCCCCcEEEEEeccccccc---HHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhhcccCcc
Confidence 3456677 7777999999999987766555543 2223344555555666677777655544332111 00111112
Q ss_pred EEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHH
Q 001965 214 NIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRH 293 (989)
Q Consensus 214 nlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ 293 (989)
+..+.++|..|...+..+-+.+|.. -+.+..+++.+++..++..-.+ .++.|+|++....-+.-+..+++++-.
T Consensus 250 grkplf~~~vle~lw~iy~~~~~~~-d~~~~~ki~k~l~i~~l~r~~~-----~ll~~im~~wLPls~avll~a~~~lp~ 323 (887)
T KOG0467|consen 250 GRKPLFVQFVLENLWRIYELALKSR-DKEKLEKIAKSLNIKLLPRDLR-----NLLDAIMSTWLPLSDAVLLTVVYKLPD 323 (887)
T ss_pred cCCCccceeehhhHHHHHHHHhccc-hHHHHHHHhhhcccccchHHHH-----HHHHHHHHhhcccccchHHHHHHhcCC
Confidence 2399999999999999999999988 6667777888888777655444 667788888766555556678888777
Q ss_pred HHHHHHHHhhhhccc--C------CCceEEcCCCCceeeccccccceeehhhHHH
Q 001965 294 TIEVINNHISAASTT--A------GNVQVIDPAAGNVCFASASAGWSFTLHSFAK 340 (989)
Q Consensus 294 ii~~in~~l~~~~~~--~------~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~ 340 (989)
.++..+..+...... . .....-+|.-++|.+.+++++|.+.-..++.
T Consensus 324 pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~ 378 (887)
T KOG0467|consen 324 PIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQS 378 (887)
T ss_pred HHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchh
Confidence 777666665543211 0 0112336778899999999999987666654
No 421
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.33 E-value=0.007 Score=68.56 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=59.0
Q ss_pred EEEeeeeEEEeecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-----------ccchHHHHHHHHH
Q 001965 193 SIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-----------MVNTERAIRHAIQ 261 (989)
Q Consensus 193 ti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-----------~~qt~~~l~~~~~ 261 (989)
|.......+.+ ++..+.++|+.|+.............++++|+|||.++-- ...+..+++.+..
T Consensus 148 T~Gi~~~~f~~-----~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 148 TTGIVETKFTI-----KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred cCCeeEEEEEe-----cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 33334444555 5678999999999999999999999999999999998631 2233344444433
Q ss_pred ----cCCCEEEEEEccccc
Q 001965 262 ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 262 ----~~ip~ilviNKiD~~ 276 (989)
.++|++|++||.|+.
T Consensus 223 ~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 223 SRWFANTSIILFLNKKDLF 241 (317)
T ss_pred CccccCCCEEEEccChHHH
Confidence 467999999999987
No 422
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.26 E-value=0.011 Score=61.58 Aligned_cols=57 Identities=19% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++|+||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 334447788888999999999999998765444444422 235689999999999863
No 423
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.21 E-value=0.0061 Score=67.67 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=46.4
Q ss_pred CCccc-chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 219 PGHVN-FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~d-f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|||.. ...++..++..||.+|+|+||..+.......+.+.+ .+.|+|+|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 89864 667888999999999999999988776666665555 367999999999985
No 424
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.0068 Score=70.73 Aligned_cols=135 Identities=15% Similarity=0.081 Sum_probs=63.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCc---ccccCCCCCCccee--ccCcc-ceeeeeEEEEeeeeE--EEeecCCCCce
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHH---MSTFDPNSEKHTRY--TDTRI-DEQERRISIKAVPMS--LVLEDSNSKSY 211 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~---i~~~g~~~~~~~~~--~D~~~-~E~~rgiti~~~~~~--~~~~~~~~~~~ 211 (989)
-+.|+++|..|+||||++..|...... ....+-......|+ .+... .-...|+.+....-. +...-..-.++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 357999999999999999988653200 00000000111111 00000 000112222211000 00000012456
Q ss_pred EEEEeeCCCcccchHHHHH---Hhhh---cCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 212 LCNIMDSPGHVNFSDEMTA---ALRL---ADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~---alr~---aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.+.+|||+|.......... .+.. .+-.+||+|+..+-..- ..+++.....+ .-=++++|+|-.
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~-~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL-DEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeeeCC
Confidence 7899999998654443322 2222 24578999998543211 12222222222 346788999986
No 425
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=96.17 E-value=0.038 Score=50.22 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=46.1
Q ss_pred EEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE
Q 001965 494 VTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI 568 (989)
Q Consensus 494 V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I 568 (989)
|...|..... +.+..|||.+|++++||++.+...+ .......+|..|.. ...++++|.|||.|+|
T Consensus 5 I~~vf~v~g~-GtVv~G~v~~G~v~~g~~v~~~P~~-----~g~~~~~~V~sI~~----~~~~~~~a~aGd~v~l 69 (87)
T cd03694 5 IDEIYSVPGV-GTVVGGTVSKGVIRLGDTLLLGPDQ-----DGSFRPVTVKSIHR----NRSPVRVVRAGQSASL 69 (87)
T ss_pred EEeEEEcCCc-ceEEEEEEecCEEeCCCEEEECCCC-----CCCEeEEEEEEEEE----CCeECCEECCCCEEEE
Confidence 3333433444 4588999999999999999987542 01123567887753 3667899999999987
No 426
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.15 E-value=0.0067 Score=62.20 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=45.2
Q ss_pred CCCcc-cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 218 SPGHV-NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~-df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
-|||. .-..++..++..||.+++|+|+.++.......++..+ .+.|+++++||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 47875 4567888999999999999999988766655555543 357999999999985
No 427
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.08 E-value=0.013 Score=67.01 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=60.0
Q ss_pred EEEeeeeEEEeecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC-----------cccchHHHHHHHHH
Q 001965 193 SIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-----------VMVNTERAIRHAIQ 261 (989)
Q Consensus 193 ti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg-----------v~~qt~~~l~~~~~ 261 (989)
|.......+.+ ++..+.++|..|+..+...+...+..++++|+|||.++- -...+..+++.+..
T Consensus 171 T~Gi~~~~f~~-----~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 171 TTGIQETAFIV-----KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred ccceEEEEEEE-----CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 33334444544 567799999999999999999999999999999999862 23344445555443
Q ss_pred ----cCCCEEEEEEcccccc
Q 001965 262 ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 262 ----~~ip~ilviNKiD~~~ 277 (989)
.++|++|++||.|...
T Consensus 246 ~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 246 SRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred CccccCCcEEEEEecHHhHH
Confidence 4679999999999973
No 428
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.08 E-value=0.016 Score=68.21 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=39.4
Q ss_pred CceEEEEeeCCCcccchH----HHHHHhh---hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSD----EMTAALR---LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~----ev~~alr---~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.||||||+..+.. ++...++ .-+-+.||+++..+. .....+++.....++ --++++|+|..
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 357799999999876542 3333333 223678899987542 122233333332232 36889999985
No 429
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.0091 Score=69.26 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=39.0
Q ss_pred CceEEEEeeCCCcccchHHHH----HHhhh-----cCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMT----AALRL-----ADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~----~alr~-----aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.||||||+......-. .-++. ..-.+||+||.-|-... ..+++.-...+ +-=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 467789999999864433322 22222 23578999999773222 22222222222 456789999985
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.06 E-value=0.014 Score=64.48 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=38.8
Q ss_pred ceEEEEeeCCCcccchHH----HHHHhhh--cCeEEEEeecCCCcccchHHHHHHHHHcC-C-CEEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDE----MTAALRL--ADGAVLIVDAAEGVMVNTERAIRHAIQER-L-PIVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~e----v~~alr~--aD~ailVVDa~egv~~qt~~~l~~~~~~~-i-p~ilviNKiD~~ 276 (989)
++.+.||||||......+ +...++. .|-.+||+||..+- .....++...+ + +-=++++|+|-.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~----~d~~~~~~~f~~~~~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH----HHHHHHHHHhCCCCCCEEEEEeecCC
Confidence 578999999998754333 3333332 36689999987542 22223333322 2 446789999986
No 431
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=95.96 E-value=0.021 Score=63.35 Aligned_cols=95 Identities=19% Similarity=0.306 Sum_probs=58.8
Q ss_pred hccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC------
Q 001965 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS------ 206 (989)
Q Consensus 133 l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~------ 206 (989)
+|..+.+--.++|+|-+++|||||.++|-...- + +...-| .||......+..++.
T Consensus 13 ~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a-----~---~~NfPF-----------~TIdPn~a~V~v~d~Rfd~l~ 73 (391)
T KOG1491|consen 13 LLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKA-----G---AANFPF-----------CTIDPNEARVEVPDSRFDLLC 73 (391)
T ss_pred cccCCCCcceeeEeeCCCCchHHHHHHHhcCCC-----C---ccCCCc-----------ceeccccceeecCchHHHHHH
Confidence 344344445699999999999999999943211 1 111111 122222222222111
Q ss_pred ------CCCceEEEEeeCCCccc-------chHHHHHHhhhcCeEEEEeecCC
Q 001965 207 ------NSKSYLCNIMDSPGHVN-------FSDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 207 ------~~~~~~inlIDTPGh~d-------f~~ev~~alr~aD~ailVVDa~e 246 (989)
......+++.|.+|.+. +......-+|.+|+++-||+|.+
T Consensus 74 ~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 74 PIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 11245689999999864 44566778999999999999975
No 432
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.95 E-value=0.038 Score=49.73 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=52.1
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
+++.|..|+||||++..|...-.. .|. .....| .+.++|+||..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~---~g~----~v~~~~-----------------------------d~iivD~~~~~ 45 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK---RGK----RVLLID-----------------------------DYVLIDTPPGL 45 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCC----eEEEEC-----------------------------CEEEEeCCCCc
Confidence 678899999999999999654321 000 011111 37899999987
Q ss_pred cchHH-HHHHhhhcCeEEEEeecCCCcccchHHH
Q 001965 223 NFSDE-MTAALRLADGAVLIVDAAEGVMVNTERA 255 (989)
Q Consensus 223 df~~e-v~~alr~aD~ailVVDa~egv~~qt~~~ 255 (989)
+.... ....+..+|.++++++....-.......
T Consensus 46 ~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 46 GLLVLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred cchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 64322 2577889999999999887655555444
No 433
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.94 E-value=0.047 Score=49.29 Aligned_cols=65 Identities=22% Similarity=0.099 Sum_probs=46.8
Q ss_pred EEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 494 VTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 494 V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
|..+|..... +.++.+||-+|+|++|+.|++++.+. -....+|..|.. ....+++|.+|+-|+|.
T Consensus 5 V~~vf~~~~~-g~vag~kV~~G~l~~g~~v~vlr~~~------~~~~g~i~sl~~----~~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 5 VRAVFKISKV-GNIAGCYVTDGKIKRNAKVRVLRNGE------VIYEGKISSLKR----FKDDVKEVKKGYECGIT 69 (84)
T ss_pred EEEEEECCCC-cEEEEEEEEECEEeCCCEEEEEcCCC------EEEEEEEEEEEE----cCcccCEECCCCEEEEE
Confidence 3344433333 45899999999999999999998651 122356777663 46778999999999884
No 434
>PRK00098 GTPase RsgA; Reviewed
Probab=95.92 E-value=0.0092 Score=67.03 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.++++|++|+|||||+++|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999754
No 435
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.92 E-value=0.022 Score=62.81 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=43.2
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHH----HcCCCE-EEEEEcccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI----QERLPI-VVVVNKVDR 275 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~----~~~ip~-ilviNKiD~ 275 (989)
.|.+.||||||.... ..+..++..||.+|+++.+..--...+.++++.+. ..++++ .+|+|++|.
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 578999999987542 23456799999999999886443333444443332 235554 378999984
No 436
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.016 Score=67.06 Aligned_cols=133 Identities=22% Similarity=0.135 Sum_probs=67.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCccc-ccCCCCCCcceeccCcc---ceee------eeEEEEeeeeEEEeec--CC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMS-TFDPNSEKHTRYTDTRI---DEQE------RRISIKAVPMSLVLED--SN 207 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~-~~g~~~~~~~~~~D~~~---~E~~------rgiti~~~~~~~~~~~--~~ 207 (989)
.++|+++|+.|+||||.+..|........ ..|... ..-..|+.. .|+- -|+.+......-.+.. .+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V--~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNI--KIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeE--EEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 46899999999999999988864321000 000000 011122210 0110 1222211100000000 11
Q ss_pred CCceEEEEeeCCCcccch----HHHHHHhhhc--C-eEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 208 SKSYLCNIMDSPGHVNFS----DEMTAALRLA--D-GAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 208 ~~~~~inlIDTPGh~df~----~ev~~alr~a--D-~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
..++.+.||||||..-.. .++..-+..+ + -.+||+||..|-.... ++++.....+ +-=++++|+|-.
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 246789999999975432 3444444433 3 5899999998732222 3333332222 456789999985
No 437
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.82 E-value=0.015 Score=76.94 Aligned_cols=64 Identities=25% Similarity=0.437 Sum_probs=38.6
Q ss_pred EEEeeCCCcccc--------hH---HHHHHh------hhcCeEEEEeecCCCcccchHH------HHH----H---HHHc
Q 001965 213 CNIMDSPGHVNF--------SD---EMTAAL------RLADGAVLIVDAAEGVMVNTER------AIR----H---AIQE 262 (989)
Q Consensus 213 inlIDTPGh~df--------~~---ev~~al------r~aD~ailVVDa~egv~~qt~~------~l~----~---~~~~ 262 (989)
-.+|||+|.--. .. .....+ +-.||+|++||+.+=....... .++ . ....
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~ 242 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA 242 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 569999994211 11 122223 3479999999998644321111 111 1 1223
Q ss_pred CCCEEEEEEccccc
Q 001965 263 RLPIVVVVNKVDRL 276 (989)
Q Consensus 263 ~ip~ilviNKiD~~ 276 (989)
++|+-|+++|||++
T Consensus 243 ~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 243 RFPVYLVLTKADLL 256 (1169)
T ss_pred CCCEEEEEecchhh
Confidence 67999999999987
No 438
>PRK13695 putative NTPase; Provisional
Probab=95.80 E-value=0.029 Score=57.62 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=31.4
Q ss_pred hhhcCeEEEEee---cCCCcccchHHHHHHHHHcCCCEEEEEEcc
Q 001965 232 LRLADGAVLIVD---AAEGVMVNTERAIRHAIQERLPIVVVVNKV 273 (989)
Q Consensus 232 lr~aD~ailVVD---a~egv~~qt~~~l~~~~~~~ip~ilviNKi 273 (989)
++.+|. +++| ..++...+....+..+.+.+.|+++++||-
T Consensus 94 l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred cCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 334554 7899 667777777888888888899999999984
No 439
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.72 E-value=0.021 Score=59.41 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=43.3
Q ss_pred eEEEEeeCCCccc------chHHHHHHhhhcC---eEEEEeecCCCc-----ccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 211 YLCNIMDSPGHVN------FSDEMTAALRLAD---GAVLIVDAAEGV-----MVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 211 ~~inlIDTPGh~d------f~~ev~~alr~aD---~ailVVDa~egv-----~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
-.+.++||||+.+ -.....+.+..-+ +++.++|+.==+ -......+.......+|.|=++.|||++
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 3477999999765 3455666666644 677777764211 1122223344456788999999999998
No 440
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.72 E-value=0.0079 Score=69.87 Aligned_cols=77 Identities=26% Similarity=0.236 Sum_probs=46.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
.-+|+++|.+|+||||++|+|+....+-. +..+|.++.- -||.. +-.+.|.|||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV---S~TPGkTKHF----------QTi~l-------------s~~v~LCDCP 367 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV---SSTPGKTKHF----------QTIFL-------------SPSVCLCDCP 367 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee---ecCCCCccee----------EEEEc-------------CCCceecCCC
Confidence 56899999999999999999986544322 2333433211 12221 1237799999
Q ss_pred CcccchHHHHHHhhhcCeEEEEee
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVD 243 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVD 243 (989)
|.+-=+....++..+++|+ |-||
T Consensus 368 GLVfPSf~~~r~emvl~Gi-LPID 390 (562)
T KOG1424|consen 368 GLVFPSFSPTRAEMVLNGI-LPID 390 (562)
T ss_pred CccccCCCchHHHHHHhcC-ccHH
Confidence 9863222233556666663 3444
No 441
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.58 E-value=0.014 Score=65.26 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=46.4
Q ss_pred CCCccc-chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 218 SPGHVN-FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~d-f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
-|||.. -..++...+..||.+|+|+|+..+.......+.+... +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 589864 4567889999999999999999887777666555443 78999999999985
No 442
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.55 E-value=0.031 Score=61.62 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=41.8
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHH----HcCCCE-EEEEEccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI----QERLPI-VVVVNKVD 274 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~----~~~ip~-ilviNKiD 274 (989)
..|.+.||||||..... .+..++..||.+|+++.+..--......+++.+. ..++++ -+++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 35889999999875322 2456688999999999875432223333333322 345664 37899966
No 443
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.53 E-value=0.022 Score=62.73 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=41.3
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
.--||-|+|-+|+|||||+|++........ +....| .+.|+|+..+..-... ..-.+.+|||
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~--k~a~vG-----------~~pGVT~~V~~~iri~-----~rp~vy~iDT 203 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKK--KAARVG-----------AEPGVTRRVSERIRIS-----HRPPVYLIDT 203 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhc--cceecc-----------CCCCceeeehhheEec-----cCCceEEecC
Confidence 344899999999999999999965443222 111111 2456777655422222 2345899999
Q ss_pred CCc
Q 001965 219 PGH 221 (989)
Q Consensus 219 PGh 221 (989)
||.
T Consensus 204 PGi 206 (335)
T KOG2485|consen 204 PGI 206 (335)
T ss_pred CCc
Confidence 995
No 444
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.45 E-value=0.034 Score=58.82 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=46.9
Q ss_pred ceEEEEeeCCCcccch------HHHHHHhhhcCeEEEEeecCCCc-ccchH-------HHHHHHHHcCCCEEEEEEcccc
Q 001965 210 SYLCNIMDSPGHVNFS------DEMTAALRLADGAVLIVDAAEGV-MVNTE-------RAIRHAIQERLPIVVVVNKVDR 275 (989)
Q Consensus 210 ~~~inlIDTPGh~df~------~ev~~alr~aD~ailVVDa~egv-~~qt~-------~~l~~~~~~~ip~ilviNKiD~ 275 (989)
...+.++|+||+++|. ..+.+-++..|.-+.+|.-.+.. +..-. ..+..+.....|-|=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 4568899999998753 45777777788666655544432 11111 1123334567899999999999
Q ss_pred cccccCCC
Q 001965 276 LITELKLP 283 (989)
Q Consensus 276 ~~~el~l~ 283 (989)
+..-=+||
T Consensus 176 ~~~ygkl~ 183 (290)
T KOG1533|consen 176 LKKYGKLP 183 (290)
T ss_pred HHhhcccc
Confidence 85433444
No 445
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.45 E-value=0.028 Score=59.71 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=41.3
Q ss_pred CceEEEEeeCCCcccchHHHHHH--hhhcCeEEEEeecCCCcccchHHHHHHHHHc----CCC-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAA--LRLADGAVLIVDAAEGVMVNTERAIRHAIQE----RLP-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~a--lr~aD~ailVVDa~egv~~qt~~~l~~~~~~----~ip-~ilviNKiD~~ 276 (989)
..|.+.||||||......- ... ++.||.+|+|+....--.....++++.+... +++ ..+++||++.-
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 4689999999987632221 112 3489999999987542222334444444432 443 35899999853
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.43 E-value=0.025 Score=67.18 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+.++++|..|+||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 5799999999999999999974
No 447
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=95.43 E-value=0.12 Score=54.61 Aligned_cols=112 Identities=11% Similarity=0.076 Sum_probs=93.4
Q ss_pred CCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeec
Q 001965 797 DEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTAD 876 (989)
Q Consensus 797 ~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~ 876 (989)
+.-+.||.+.+.-.- --+.-|+|=++-|=..|+..|+..|...-+.+...+.|.|+.+.++.|...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 89 GSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 346888888877532 12234566678788899999999999999999999999999999999999999999999876
Q ss_pred ccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEe
Q 001965 877 VPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSL 914 (989)
Q Consensus 877 ~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~ 914 (989)
+-.+ ..+++..+|..+.-.|...|+.+|+|++.+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFSN---NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 6532 4889999999999999999999999998653
No 448
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.018 Score=71.49 Aligned_cols=22 Identities=36% Similarity=0.308 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+.|+++|+.|+||||++..|..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 5789999999999999999974
No 449
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.29 E-value=0.025 Score=64.94 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=66.8
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCcc---ceeee------eEEEEeeeeEEEeec--CC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRI---DEQER------RISIKAVPMSLVLED--SN 207 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~---~E~~r------giti~~~~~~~~~~~--~~ 207 (989)
.-|+|+++|+.|+||||.+-.|......... +..- ..-.+|+.. .||-+ |+.+......-.+.. ..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~--~~kV-aiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK--KKKV-AIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc--Ccce-EEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 3789999999999999999888654331110 0000 122234331 12211 122221110000000 01
Q ss_pred CCceEEEEeeCCCcccchH----HHHHHhhhc--CeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 208 SKSYLCNIMDSPGHVNFSD----EMTAALRLA--DGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 208 ~~~~~inlIDTPGh~df~~----ev~~alr~a--D~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
-..+.+.||||.|+.-... ++...+..+ .-.-||+++..-- ..-.+++++....++ --++++|+|-.
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i-~~~I~TKlDET 351 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPI-DGLIFTKLDET 351 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCc-ceeEEEccccc
Confidence 2456799999999865443 333333333 4567788876421 112233333333332 25678999976
No 450
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.16 E-value=0.054 Score=60.63 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=42.1
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH----cCCCE-EEEEEcccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ----ERLPI-VVVVNKVDR 275 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~----~~ip~-ilviNKiD~ 275 (989)
.|.+.||||||.... ....+++..||.+|+++++..--...+..+++.+.. .+++. -+++|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 588999999987432 234467889999999998865333334444443332 23443 488899873
No 451
>PRK11568 hypothetical protein; Provisional
Probab=95.14 E-value=0.18 Score=53.34 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeec
Q 001965 797 DEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTAD 876 (989)
Q Consensus 797 ~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~ 876 (989)
+.-+.||.+.+.-.- --+.-|+|=++-|=..|+..|+..|.-.-+.|...+.|.++.+.++.+...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 89 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNS 165 (204)
T ss_pred HCCCccEEEEEEEEc---CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcc
Confidence 456888888887532 12334566678788899999999999999999999999999999999999999999999876
Q ss_pred ccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEe
Q 001965 877 VPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSL 914 (989)
Q Consensus 877 ~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~ 914 (989)
+... ..+++..+|..+.-.|...|+.+|+|++.+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 166 EYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred eecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 6532 4788999999999999999999999998654
No 452
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.89 E-value=0.067 Score=58.80 Aligned_cols=63 Identities=10% Similarity=0.032 Sum_probs=35.4
Q ss_pred CceEEEEeeCCCcccchHH-HHHHhhhcCeEEEEeecCCCcccchHHHHHHHH----HcCCCEEEEEE
Q 001965 209 KSYLCNIMDSPGHVNFSDE-MTAALRLADGAVLIVDAAEGVMVNTERAIRHAI----QERLPIVVVVN 271 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~e-v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~----~~~ip~ilviN 271 (989)
..|.+.||||||+.....- ...++..||.+|+++.+..--......+++.+. ..++++..+++
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~ 182 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLIC 182 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEE
Confidence 3688999999987532111 112344799999999886532222233333322 23566654443
No 453
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.89 E-value=0.069 Score=61.65 Aligned_cols=54 Identities=20% Similarity=0.114 Sum_probs=40.5
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.+|...+....+.+|++++|||+.+-.......+.+.+ .+.|+++|+||+|++.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 46777666666889999999999876655555554443 2679999999999863
No 454
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.72 E-value=0.036 Score=57.15 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=35.2
Q ss_pred CeEEEEeecCCCcccchHHHHHH--HHHcCCCEEEEEEccccc
Q 001965 236 DGAVLIVDAAEGVMVNTERAIRH--AIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 236 D~ailVVDa~egv~~qt~~~l~~--~~~~~ip~ilviNKiD~~ 276 (989)
|++++|+||..........+.+. +...+.|+|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999888888888777 444578999999999996
No 455
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.57 E-value=0.081 Score=58.26 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=41.5
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHH----HcCCCE-EEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI----QERLPI-VVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~----~~~ip~-ilviNKiD~ 275 (989)
+.|.+.||||||...-. .+..++..||.+|+++...---...+..+++.+. ..++++ .+|+|+++.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 35889999999865311 1234689999999998764332233344444332 234553 578899875
No 456
>PRK12289 GTPase RsgA; Reviewed
Probab=94.52 E-value=0.088 Score=60.41 Aligned_cols=46 Identities=28% Similarity=0.271 Sum_probs=35.7
Q ss_pred HhhhcCeEEEEeecCCCc-cc-chHHHHHHHHHcCCCEEEEEEccccc
Q 001965 231 ALRLADGAVLIVDAAEGV-MV-NTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 231 alr~aD~ailVVDa~egv-~~-qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+++.+|.+++|+|+.+.. .. ...+.+..+...++|+++|+||+|+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 478899999999998643 22 23455556667899999999999986
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.31 E-value=0.21 Score=57.66 Aligned_cols=65 Identities=29% Similarity=0.423 Sum_probs=42.3
Q ss_pred CceEEEEeeCCCccc----chHHHH--HHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVN----FSDEMT--AALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~d----f~~ev~--~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKiD~~ 276 (989)
..+.+.|+||+|.-. ..+|+. ...-.-|=+++||||.-| |...-...+-.+.+++ =++++|+|--
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCC
Confidence 457899999999654 334433 233345889999999987 3332223333455665 5788999964
No 458
>PRK00098 GTPase RsgA; Reviewed
Probab=94.29 E-value=0.085 Score=59.27 Aligned_cols=46 Identities=28% Similarity=0.286 Sum_probs=34.8
Q ss_pred HhhhcCeEEEEeecCCCccc--chHHHHHHHHHcCCCEEEEEEccccc
Q 001965 231 ALRLADGAVLIVDAAEGVMV--NTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 231 alr~aD~ailVVDa~egv~~--qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+|.+++|+|+.+.... ...+.+..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 47899999999999754321 12344555677889999999999985
No 459
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.097 Score=55.52 Aligned_cols=118 Identities=20% Similarity=0.336 Sum_probs=74.6
Q ss_pred EEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcc
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHV 222 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~ 222 (989)
|.+.|+--+|||++.....++- .+. ++...|....+|...-.-+| ..+.+||-||+.
T Consensus 30 ilLMG~rRsGKsSI~KVVFhkM---------sPn-----eTlflESTski~~d~is~sf---------inf~v~dfPGQ~ 86 (347)
T KOG3887|consen 30 ILLMGLRRSGKSSIQKVVFHKM---------SPN-----ETLFLESTSKITRDHISNSF---------INFQVWDFPGQM 86 (347)
T ss_pred EEEEeecccCcchhhheeeecc---------CCC-----ceeEeeccCcccHhhhhhhh---------cceEEeecCCcc
Confidence 7899999999999887654321 111 23333433334332111111 237799999999
Q ss_pred cchHH---HHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHHHc----CCCEEEEEEcccccccccCCC
Q 001965 223 NFSDE---MTAALRLADGAVLIVDAAEGVMVN-TERAIRHAIQE----RLPIVVVVNKVDRLITELKLP 283 (989)
Q Consensus 223 df~~e---v~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~~~----~ip~ilviNKiD~~~~el~l~ 283 (989)
+|.+. -..-.+.+-+.|+||||.+..+.. +.-+.-.++.. ++.+=++|-|.|-+.-+.|+.
T Consensus 87 ~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie 155 (347)
T KOG3887|consen 87 DFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE 155 (347)
T ss_pred ccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh
Confidence 87654 346678889999999998755432 33233333333 346789999999998776643
No 460
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=94.19 E-value=0.067 Score=58.38 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHhhhcCeEEEEeecCCCc-cc-chHHHHHHHHHcCCCEEEEEEccccc
Q 001965 230 AALRLADGAVLIVDAAEGV-MV-NTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 230 ~alr~aD~ailVVDa~egv-~~-qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
..++.+|++++|+|+.+.. .. ...+.+..+...++|+++|+||+|+.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 3688999999999998644 22 23344455566889999999999985
No 461
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.96 E-value=0.32 Score=54.13 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.1
Q ss_pred HHHHHhhccCCC--CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 127 TQFLVGLMSNPT--LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 127 ~~~l~~l~~~~~--~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-+.|.+++..|. +++|+.|+|.+|.|||++++++...
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~ 84 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL 84 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH
Confidence 346677777764 5679999999999999999999753
No 462
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=0.098 Score=67.73 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=40.2
Q ss_pred EEEeeCCCcc------cchHH-----------HHHHhhhcCeEEEEeecCCCcccchHHH---HHH----------HHHc
Q 001965 213 CNIMDSPGHV------NFSDE-----------MTAALRLADGAVLIVDAAEGVMVNTERA---IRH----------AIQE 262 (989)
Q Consensus 213 inlIDTPGh~------df~~e-----------v~~alr~aD~ailVVDa~egv~~qt~~~---l~~----------~~~~ 262 (989)
-.+|||.|-- ++.+. -.+..+-.||||+.+|+.+=.+..-.+. .+. ....
T Consensus 176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~ 255 (1188)
T COG3523 176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA 255 (1188)
T ss_pred eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5699999942 12222 1234456799999999987443322222 111 1234
Q ss_pred CCCEEEEEEccccc
Q 001965 263 RLPIVVVVNKVDRL 276 (989)
Q Consensus 263 ~ip~ilviNKiD~~ 276 (989)
.+|+-|++||+|++
T Consensus 256 ~~PVYl~lTk~Dll 269 (1188)
T COG3523 256 RLPVYLVLTKADLL 269 (1188)
T ss_pred CCceEEEEeccccc
Confidence 67999999999997
No 463
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=93.82 E-value=0.34 Score=55.92 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=76.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEee--------eeEEEeecCCCCceEE
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAV--------PMSLVLEDSNSKSYLC 213 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~--------~~~~~~~~~~~~~~~i 213 (989)
=|+++|++-+||||++.++....- ++.+.... ...|..|-+++.-. |-||-++ ++.+.+ .++-..++
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~V-lPnI~d~~-~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l--~~~~~~kV 93 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLV-LPNIEDEY-ERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITL--DDGIKVKV 93 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhc-CCCCCCHH-HHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEe--cCCceEEE
Confidence 499999999999999999975432 22111111 12333444433321 2222221 111112 12346778
Q ss_pred EEeeCCCcc-------------------------cchHHHHHHhhh------cCeEEEEeecCCCc------ccchHHHH
Q 001965 214 NIMDSPGHV-------------------------NFSDEMTAALRL------ADGAVLIVDAAEGV------MVNTERAI 256 (989)
Q Consensus 214 nlIDTPGh~-------------------------df~~ev~~alr~------aD~ailVVDa~egv------~~qt~~~l 256 (989)
-||||-|+. -|..-..-+-+. .=|+|+.-|++=+- ....++++
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 899999862 133333333332 12667777776432 34567888
Q ss_pred HHHHHcCCCEEEEEEccccc
Q 001965 257 RHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 257 ~~~~~~~ip~ilviNKiD~~ 276 (989)
+.+.+.+.|+++++|-.+=.
T Consensus 174 ~ELk~igKPFvillNs~~P~ 193 (492)
T PF09547_consen 174 EELKEIGKPFVILLNSTKPY 193 (492)
T ss_pred HHHHHhCCCEEEEEeCCCCC
Confidence 99999999999999987654
No 464
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.76 E-value=0.098 Score=58.08 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=36.7
Q ss_pred ceEEEEeeCCCcccchH-HHHHHhhhcCeEEEEeecCCCcccchHHHHH---HHHH-cCCCEEEEEEc
Q 001965 210 SYLCNIMDSPGHVNFSD-EMTAALRLADGAVLIVDAAEGVMVNTERAIR---HAIQ-ERLPIVVVVNK 272 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~-ev~~alr~aD~ailVVDa~egv~~qt~~~l~---~~~~-~~ip~ilviNK 272 (989)
.|.+.||||||...... .+..++..||.+|+++.+..--......+++ ...+ .+..+..+++.
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n 183 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYN 183 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEe
Confidence 58899999998542211 1233566799999999987533333333333 3322 34555444443
No 465
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=93.75 E-value=0.45 Score=55.67 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=80.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCC------------CCc---------ceeccCcc-----------
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNS------------EKH---------TRYTDTRI----------- 185 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~------------~~~---------~~~~D~~~----------- 185 (989)
+..+.|+++|.-.+|||+.++++.. ++..++ |+.. .|+ .|-.|-.+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAq-ARIFPR-GSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQ-ARIFPR-GSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHH-hccCcC-CCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 4567799999999999999998853 333332 1100 000 01111111
Q ss_pred -----ceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccc-------------hHHHHHHhhhcCeEEEEee-cC-
Q 001965 186 -----DEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNF-------------SDEMTAALRLADGAVLIVD-AA- 245 (989)
Q Consensus 186 -----~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df-------------~~ev~~alr~aD~ailVVD-a~- 245 (989)
.....|.|+....+++...+. .-..+.|+|.||.++- ....-+.+..-.++||+|- ++
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGP--gLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGP--GLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCC--CcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 112336677777777765221 2346899999997542 1223345566678888764 11
Q ss_pred CCcccchHHHHHHHHHcCCCEEEEEEccccccccc
Q 001965 246 EGVMVNTERAIRHAIQERLPIVVVVNKVDRLITEL 280 (989)
Q Consensus 246 egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el 280 (989)
+.-....-.+..++.-.+...|+|++|+|+...++
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknl 496 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNV 496 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhcc
Confidence 11122233445555566778999999999986554
No 466
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.68 E-value=0.16 Score=56.16 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=40.0
Q ss_pred CceEEEEeeCCCcccch-HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH---cCCCEE-EEEEccc
Q 001965 209 KSYLCNIMDSPGHVNFS-DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ---ERLPIV-VVVNKVD 274 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~-~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~---~~ip~i-lviNKiD 274 (989)
.+|.+.||||||..... -....++..||.+|+|+....--......+++.+.. .++++. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 46889999999875211 111223568999999998754333333344454443 355664 7888764
No 467
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.57 E-value=0.069 Score=45.31 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+..|.|+.++|||||+|++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999854
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.91 Score=45.92 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=30.6
Q ss_pred HHHHHhhhcCeEEEEeecCCCcc---cchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 227 EMTAALRLADGAVLIVDAAEGVM---VNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 227 ev~~alr~aD~ailVVDa~egv~---~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.+.+|++.||. ++||=.-... ..-.+.+..+...+.|+|.++-+-+|.
T Consensus 93 al~rA~~~aDv--IIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 93 ALRRALEEADV--IIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH 143 (179)
T ss_pred HHHHHhhcCCE--EEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC
Confidence 34566666775 5567553333 333455666677888999999876663
No 469
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=93.50 E-value=0.19 Score=41.81 Aligned_cols=47 Identities=32% Similarity=0.476 Sum_probs=26.2
Q ss_pred HHHHhh-hcCeEEEEeecCCCcccchH---HHHHHHHHc--CCCEEEEEEccc
Q 001965 228 MTAALR-LADGAVLIVDAAEGVMVNTE---RAIRHAIQE--RLPIVVVVNKVD 274 (989)
Q Consensus 228 v~~alr-~aD~ailVVDa~egv~~qt~---~~l~~~~~~--~ip~ilviNKiD 274 (989)
...|++ ..+.+++++|.++......+ .+++.++.. +.|+++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 445555 45889999999986543322 233444433 789999999998
No 470
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.20 E-value=0.27 Score=54.43 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=36.8
Q ss_pred CceEEEEeeCCCcccchHH-HHHHhhhcCeEEEEeecCCCcccchHHHHHH---HH-HcCCCEE-EEEEc
Q 001965 209 KSYLCNIMDSPGHVNFSDE-MTAALRLADGAVLIVDAAEGVMVNTERAIRH---AI-QERLPIV-VVVNK 272 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~e-v~~alr~aD~ailVVDa~egv~~qt~~~l~~---~~-~~~ip~i-lviNK 272 (989)
+.|.+.||||||......- ...++..||.+|+++.+..--......+++. +. ..++++. ++.|+
T Consensus 114 ~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 114 DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 3588999999996521111 1123457899999998876433334444332 22 2355554 44454
No 471
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=93.11 E-value=0.22 Score=54.89 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=49.9
Q ss_pred cHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec
Q 001965 126 STQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED 205 (989)
Q Consensus 126 ~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 205 (989)
+.+-+..+......+..|+|+|...+|||.|+|.|+....... .|.... -..+||-+-+.+ .
T Consensus 7 ~~~al~~l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~-~~~~~~-----------~~T~Giw~w~~~------~ 68 (260)
T PF02263_consen 7 NEEALEILQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFS-WGPTVE-----------PCTKGIWMWSEP------L 68 (260)
T ss_dssp -HHHHHHHCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSE-SSSCSS-----------ST-SCEEEECCE-------
T ss_pred CHHHHHHHhcCCCCEEEEEeecCCccchHHHHHHHhccccccc-ccCCCC-----------CCCcceeeeecc------c
Confidence 3444555544457788999999999999999999975322211 111111 123566554333 2
Q ss_pred CCCCceEEEEeeCCCccc
Q 001965 206 SNSKSYLCNIMDSPGHVN 223 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~d 223 (989)
..+....+.++||.|..+
T Consensus 69 ~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 69 PDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp TTSTCEEEEEEEEECBTT
T ss_pred ccccceeEEEecchhccc
Confidence 244678899999999865
No 472
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=93.04 E-value=0.25 Score=52.08 Aligned_cols=68 Identities=26% Similarity=0.289 Sum_probs=51.6
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLI 277 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~ 277 (989)
+.|.+.|||||.... ..+....++.+|++|+|+++...-.......++.+.+.+.+ +-+|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 468899999998322 22334455779999999999877777778888888888876 467999998764
No 473
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=92.94 E-value=0.17 Score=47.97 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=18.2
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.|+++|..|+|||+|+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred EEEEECCCChhHHHHHHHHh
Confidence 48999999999999999883
No 474
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=92.91 E-value=0.5 Score=43.76 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=47.7
Q ss_pred ceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeecccee
Q 001965 505 VFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATL 581 (989)
Q Consensus 505 ~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl 581 (989)
+.++-+-|.+|||+.||.+. .|..| .+|..|+-..| .++++|.||..|-|.|++..-.-|+.+
T Consensus 15 G~vatviV~~GtL~~Gd~iv-~G~~~----------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~~ 77 (95)
T cd03702 15 GPVATVLVQNGTLKVGDVLV-AGTTY----------GKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDKF 77 (95)
T ss_pred CccEEEEEEcCeEeCCCEEE-Ecccc----------cEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCEE
Confidence 45888899999999999875 45543 47888877666 568999999999999987643224444
No 475
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.87 E-value=0.53 Score=52.89 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCcc---cee------eeeEEEEe-----eeeEEEe
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRI---DEQ------ERRISIKA-----VPMSLVL 203 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~---~E~------~rgiti~~-----~~~~~~~ 203 (989)
.+.-.|.++|-.|+||||-+..|.+.-. ..|...- ....|+.. .|| .-|+.+-+ -+.++.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~---~~g~~Vl--laA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVaf 211 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLK---QQGKSVL--LAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAF 211 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHH---HCCCeEE--EEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHH
Confidence 3456789999999999999988854311 1010000 00112210 010 01222211 1111111
Q ss_pred ---ecCCCCceEEEEeeCCCc----ccchHHHHHHhhhc---Ce-----EEEEeecCCCcccchHHHHHHHHHcC--CCE
Q 001965 204 ---EDSNSKSYLCNIMDSPGH----VNFSDEMTAALRLA---DG-----AVLIVDAAEGVMVNTERAIRHAIQER--LPI 266 (989)
Q Consensus 204 ---~~~~~~~~~inlIDTPGh----~df~~ev~~alr~a---D~-----ailVVDa~egv~~qt~~~l~~~~~~~--ip~ 266 (989)
+..+.+++.+.||||+|. .++++|...-.|++ +. +++|+||.-|-. .+.|++..+ +++
T Consensus 212 DAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l 286 (340)
T COG0552 212 DAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGL 286 (340)
T ss_pred HHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCC
Confidence 112346788999999995 46778776666654 44 788889998832 244444322 232
Q ss_pred -EEEEEcccc
Q 001965 267 -VVVVNKVDR 275 (989)
Q Consensus 267 -ilviNKiD~ 275 (989)
=++++|+|-
T Consensus 287 ~GiIlTKlDg 296 (340)
T COG0552 287 DGIILTKLDG 296 (340)
T ss_pred ceEEEEeccc
Confidence 577899994
No 476
>PRK01889 GTPase RsgA; Reviewed
Probab=92.69 E-value=0.11 Score=59.86 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
..++++|.+|+|||||+++|+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4699999999999999999986543
No 477
>KOG2484 consensus GTPase [General function prediction only]
Probab=92.66 E-value=0.11 Score=59.00 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+..|| ++|+|-+|+||||++|+|.....--. ...+|-++.+-.-+ -+..|-|+
T Consensus 250 k~sIr-vGViG~PNVGKSSvINsL~~~k~C~v---g~~pGvT~smqeV~-----------------------Ldk~i~ll 302 (435)
T KOG2484|consen 250 KTSIR-VGIIGYPNVGKSSVINSLKRRKACNV---GNVPGVTRSMQEVK-----------------------LDKKIRLL 302 (435)
T ss_pred CcceE-eeeecCCCCChhHHHHHHHHhccccC---CCCccchhhhhhee-----------------------ccCCceec
Q ss_pred eCCCcc
Q 001965 217 DSPGHV 222 (989)
Q Consensus 217 DTPGh~ 222 (989)
|+||.+
T Consensus 303 DsPgiv 308 (435)
T KOG2484|consen 303 DSPGIV 308 (435)
T ss_pred cCCcee
No 478
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=92.66 E-value=0.12 Score=55.57 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=72.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+++|.+.+|||||+..|. +..+. +..+. +.|...-+-... .+.-++.+.|.||.
T Consensus 61 ~vg~vgFPSvGksTl~~~l~---g~~s~---vasye-------------fttl~~vpG~~~-----y~gaKiqlldlpgi 116 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLT---GTFSE---VAAYE-------------FTTLTTVPGVIR-----YKGAKIQLLDLPGI 116 (358)
T ss_pred eeeEEecCccchhhhhhhhc---CCCCc---ccccc-------------ceeEEEecceEe-----ccccceeeecCcch
Confidence 58999999999999998884 33321 11110 011111111111 26677999999998
Q ss_pred ccc-------hHHHHHHhhhcCeEEEEeecCCCcccchHHHHHH-HHH-----cCCCEEEEEEcccccccccCC
Q 001965 222 VNF-------SDEMTAALRLADGAVLIVDAAEGVMVNTERAIRH-AIQ-----ERLPIVVVVNKVDRLITELKL 282 (989)
Q Consensus 222 ~df-------~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~-~~~-----~~ip~ilviNKiD~~~~el~l 282 (989)
.+= ...+++..|-|..+++|+|+...+.- ..+++. +.- .+.|.=+..-|-|+-+.++.-
T Consensus 117 iegakdgkgrg~qviavartcnli~~vld~~kp~~h--k~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~ 188 (358)
T KOG1487|consen 117 IEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH--KKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTG 188 (358)
T ss_pred hcccccCCCCccEEEEEeecccEEEEEeeccCcccH--HHHHHHhhhcceeeccCCCCCccccccccCceeeec
Confidence 753 34678889999999999999876532 233332 222 223666667777877776653
No 479
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=92.59 E-value=0.3 Score=52.90 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=50.4
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKiD~~ 276 (989)
+.|.+.|||||+..+ ..+..++..||.+|+|+++...-...+.+.++.+...+++. .+++|+.+..
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 458899999999765 46778889999999999987554445555566666667764 6899999863
No 480
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=92.51 E-value=0.095 Score=59.12 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCC
Q 001965 128 QFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSN 207 (989)
Q Consensus 128 ~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~ 207 (989)
..+..|-.....|- |+++|.+|+||||++|.|.....-.. ...+|.+.+-.+ ||..
T Consensus 296 RQf~kLh~dkkqIS-VGfiGYPNvGKSSiINTLR~KkVCkv---APIpGETKVWQY--------ItLm------------ 351 (572)
T KOG2423|consen 296 RQFAKLHSDKKQIS-VGFIGYPNVGKSSIINTLRKKKVCKV---APIPGETKVWQY--------ITLM------------ 351 (572)
T ss_pred HHHHhhccCcccee-eeeecCCCCchHHHHHHHhhcccccc---cCCCCcchHHHH--------HHHH------------
Q ss_pred CCceEEEEeeCCCcc
Q 001965 208 SKSYLCNIMDSPGHV 222 (989)
Q Consensus 208 ~~~~~inlIDTPGh~ 222 (989)
..|.||||||.+
T Consensus 352 ---krIfLIDcPGvV 363 (572)
T KOG2423|consen 352 ---KRIFLIDCPGVV 363 (572)
T ss_pred ---hceeEecCCCcc
No 481
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.26 E-value=0.11 Score=53.76 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=56.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|.|+|++|+||||++..|....+... + .. .|....+...+... .... + .+||-.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h-l---st-----gd~~r~~~~~~t~l-----g~~~-----k----~~i~~g~l 58 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH-L---DT-----GDILRAAIAERTEL-----GEEI-----K----KYIDKGEL 58 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE-E---cH-----hHHhHhhhccCChH-----HHHH-----H----HHHHcCCc
Confidence 699999999999999999987644321 1 00 11111111111000 0000 0 14555553
Q ss_pred cc---chHHHHHHhhhcCeE-EEEeecCCCcccchHHHHHHHHHcCCCEEEEE
Q 001965 222 VN---FSDEMTAALRLADGA-VLIVDAAEGVMVNTERAIRHAIQERLPIVVVV 270 (989)
Q Consensus 222 ~d---f~~ev~~alr~aD~a-ilVVDa~egv~~qt~~~l~~~~~~~ip~ilvi 270 (989)
+. ....+...+..+|+. .+++|.-.-...|.+.+-+.+...+.+.-.++
T Consensus 59 v~d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~ 111 (178)
T COG0563 59 VPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVI 111 (178)
T ss_pred cchHHHHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEE
Confidence 22 223444566666744 47778776666677666666666565554444
No 482
>PRK13796 GTPase YqeH; Provisional
Probab=92.04 E-value=0.42 Score=55.30 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=35.6
Q ss_pred cchHHHHHHhhhcC-eEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 223 NFSDEMTAALRLAD-GAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 223 df~~ev~~alr~aD-~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+|. .+...+..+| .+++|||+.+-.......+.+.. .+.|+++|+||+|++
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl 109 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLL 109 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhC
Confidence 343 3667777677 89999999885544333333322 367999999999996
No 483
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=92.01 E-value=0.31 Score=52.66 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=48.2
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHH------HcCCCEEEEEEccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI------QERLPIVVVVNKVD 274 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~------~~~ip~ilviNKiD 274 (989)
+.|.+.||||||+.+ ..+..++..||.+|+.+.+..--...+.+.++.+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468899999999875 66778999999999999887644444444443332 33678889999987
No 484
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.00 E-value=0.4 Score=49.32 Aligned_cols=139 Identities=20% Similarity=0.233 Sum_probs=74.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCc-ccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHH-MSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~-i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.|.|+|.+++||||++..|....+. ...+... ....+|-.+.|.. +...+...|..+.+|.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~--------~~~~~e~~~ri~~----------h~~~R~~~w~t~E~~~ 64 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA--------QPFDDEMAARIAH----------HRQRRPAHWQTVEEPL 64 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC--------CCChHHHHHHHHH----------HHhcCCCCCeEecccc
Confidence 4899999999999999999866431 1100000 0011111111100 0011233466777776
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCccc-----ch--------HHHHHHHHHcCCCEEEEEEcccccccccCCCchHH
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMV-----NT--------ERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDA 287 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~-----qt--------~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~ 287 (989)
+. .+..... ...+-+++||+..++.. .. ..+++.+.+.+.++|++-|=+..-+. |....
T Consensus 65 ~l---~~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g~v----p~~~~ 136 (170)
T PRK05800 65 DL---AELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMGIV----PEYRL 136 (170)
T ss_pred cH---HHHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCccccc----CCCHH
Confidence 52 2222221 12345788999766521 11 12333445567788888776554432 33344
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 001965 288 YHKLRHTIEVINNHISAAS 306 (989)
Q Consensus 288 ~~~l~~ii~~in~~l~~~~ 306 (989)
-..++..+-.+|+.+...+
T Consensus 137 ~r~~~d~lG~lnq~la~~a 155 (170)
T PRK05800 137 GRHFRDIAGRLNQQLAAAA 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 4557788899999998754
No 485
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=91.94 E-value=1.3 Score=48.70 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=47.5
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE---EEEEEccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI---VVVVNKVD 274 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~---ilviNKiD 274 (989)
.+.+.|||||+-.. ..+..++..+|.+|+|....----..+...++.+.+.+.+. ++++|+++
T Consensus 112 ~~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~ 177 (262)
T COG0455 112 LYDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVR 177 (262)
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecc
Confidence 35789999998654 56777888889999998876433334556678888887764 38999998
No 486
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.85 E-value=0.14 Score=48.79 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhcC
Q 001965 143 VALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
|+|.|.+|+||||++..|....+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 89999999999999999976543
No 487
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=91.69 E-value=0.27 Score=55.87 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=59.6
Q ss_pred eeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-----------ccchHHHHHH
Q 001965 190 RRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-----------MVNTERAIRH 258 (989)
Q Consensus 190 rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-----------~~qt~~~l~~ 258 (989)
|.-|.....+.|.+ ++..+-++|.+|+..=...+....-.++++|+||+.++=- +..+..+++.
T Consensus 179 R~~T~GI~e~~F~~-----k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~s 253 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTI-----KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFES 253 (354)
T ss_pred ccCcCCeeEEEEEe-----CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHH
Confidence 43444445555665 6678999999999877777788889999999999988522 2334445554
Q ss_pred HHH----cCCCEEEEEEccccc
Q 001965 259 AIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 259 ~~~----~~ip~ilviNKiD~~ 276 (989)
... .+.++|+|+||+|+.
T Consensus 254 I~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 254 ICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred HhcCcccccCcEEEEeecHHHH
Confidence 433 356999999999997
No 488
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=91.63 E-value=0.34 Score=52.72 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=52.0
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~~ 276 (989)
.|.+.|||||+..+ ..+..++..||.+|+|+.+...-...+.++++.+...+. ++.+++|+++..
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCch
Confidence 57899999999764 456778999999999999987666677777777766655 678999999753
No 489
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=0.34 Score=54.94 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=67.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCC----CCccee--ccCcccee-eeeEEEEeeeeEEEe--------e
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNS----EKHTRY--TDTRIDEQ-ERRISIKAVPMSLVL--------E 204 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~----~~~~~~--~D~~~~E~-~rgiti~~~~~~~~~--------~ 204 (989)
.-.|-++|--|+||||.+-.|.+.-. +.|... +.+.|. .|.....- .-++.+..+.....- .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~k---kkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYK---KKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHH---hcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 44678999999999999998865421 111110 111111 12111100 112322222111100 0
Q ss_pred cCCCCceEEEEeeCCCccc----chHHHHHHhhh--cCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 205 DSNSKSYLCNIMDSPGHVN----FSDEMTAALRL--ADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 205 ~~~~~~~~inlIDTPGh~d----f~~ev~~alr~--aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
..+..++.+.|+||.|... +..|+...... -|-+|+|+||+-|- ..+-...+-+..+- --++|+|+|-.
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHHHHHHHHHHhhccceEEEEecccC
Confidence 1234678899999999643 34444433332 48999999999873 32222222222232 25678999965
No 490
>PRK08118 topology modulation protein; Reviewed
Probab=91.40 E-value=0.17 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.|.|+|.+|+|||||+..|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999976554
No 491
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=91.31 E-value=0.2 Score=55.94 Aligned_cols=46 Identities=24% Similarity=0.204 Sum_probs=35.4
Q ss_pred HhhhcCeEEEEeecCCCc-cc-chHHHHHHHHHcCCCEEEEEEccccc
Q 001965 231 ALRLADGAVLIVDAAEGV-MV-NTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 231 alr~aD~ailVVDa~egv-~~-qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
-++.+|.+++|+|+.+.. .. ...+.+..+...++|+++|+||+|+.
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 367789999999998875 32 22344555667889999999999986
No 492
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.29 E-value=0.64 Score=52.74 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=26.1
Q ss_pred HHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 128 QFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 128 ~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
++|..++.. -.||.|+|.+|+|||||+++|+..
T Consensus 135 ~~L~~~v~~---~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 135 SVIRSAIDS---RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHHHHc---CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456655543 258999999999999999999754
No 493
>PRK12288 GTPase RsgA; Reviewed
Probab=91.09 E-value=0.5 Score=54.26 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=32.8
Q ss_pred hhhcCeEEEEeecCCCcccch-HHHHHHHHHcCCCEEEEEEccccc
Q 001965 232 LRLADGAVLIVDAAEGVMVNT-ERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 232 lr~aD~ailVVDa~egv~~qt-~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
++.+|.+++|.+........- .+.+..+...++|+++|+||+|+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~ 163 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLL 163 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 467899999988765443322 333445667789999999999996
No 494
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.97 E-value=0.25 Score=53.27 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 129 FLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 129 ~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.|...+..+.+..-|+|+|..|+|||||++.|...
T Consensus 22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555566778999999999999999999654
No 495
>PHA02518 ParA-like protein; Provisional
Probab=90.84 E-value=0.99 Score=47.37 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=44.2
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH-----cCCCE-EEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ-----ERLPI-VVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~-----~~ip~-ilviNKiD~ 275 (989)
..|.+.||||||.. ...+..++..||.+|+++.+..--...+.++++.+.. .+.|. .++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 45789999999974 4668889999999999999876433334444433322 24554 466677654
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.83 E-value=0.18 Score=53.29 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.|+|+|++|+|||||+.+|-
T Consensus 30 vv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999994
No 497
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.67 E-value=0.23 Score=52.74 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=26.8
Q ss_pred hccCCCCcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 133 l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
||..|++.+-|+|.|.++|||||++..|...-+
T Consensus 1 m~~~~~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 1 MMKKPEKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CCCCCCceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 344556777899999999999999999976544
No 498
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.59 E-value=0.23 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 001965 143 VALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~ 163 (989)
|+|.|.+++||||+++.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999643
No 499
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.56 E-value=0.18 Score=54.07 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=17.5
Q ss_pred EEEEcCCCCChHHHHHHH
Q 001965 143 VALVGHLHHGKTVFMDML 160 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~L 160 (989)
|+|+|++|||||||++.|
T Consensus 34 vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999999998
No 500
>PRK01889 GTPase RsgA; Reviewed
Probab=90.41 E-value=0.31 Score=56.21 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=38.3
Q ss_pred hhhcCeEEEEeecCCCccc-chHHHHHHHHHcCCCEEEEEEccccc
Q 001965 232 LRLADGAVLIVDAAEGVMV-NTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 232 lr~aD~ailVVDa~egv~~-qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
++.+|.+++|+++...... ...+++-.+...++|++||+||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999877665 55677778888999999999999997
Done!