Query 001965
Match_columns 989
No_of_seqs 524 out of 3139
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 4E-156 1E-160 1456.9 76.1 825 123-971 2-841 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 1E-126 4E-131 1175.0 46.6 683 138-931 11-704 (709)
3 2rdo_7 EF-G, elongation factor 100.0 5E-114 2E-118 1058.8 68.9 677 136-931 6-698 (704)
4 2xex_A Elongation factor G; GT 100.0 1E-111 5E-116 1036.5 58.3 666 137-931 7-686 (693)
5 3j25_A Tetracycline resistance 100.0 7E-116 2E-120 1066.1 15.6 626 139-953 1-637 (638)
6 1dar_A EF-G, elongation factor 100.0 7E-111 2E-115 1030.2 50.3 667 135-932 7-688 (691)
7 2dy1_A Elongation factor G; tr 100.0 2E-102 5E-107 953.0 52.6 636 137-930 6-656 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 3.5E-77 1.2E-81 712.6 29.8 457 135-687 26-502 (548)
9 2ywe_A GTP-binding protein LEP 100.0 1.2E-70 4E-75 658.1 43.2 498 137-954 3-521 (600)
10 3cb4_D GTP-binding protein LEP 100.0 1E-68 3.4E-73 642.8 44.3 494 138-954 2-516 (599)
11 2h5e_A Peptide chain release f 100.0 5.5E-60 1.9E-64 562.2 31.5 450 138-684 11-476 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 3.8E-59 1.3E-63 554.3 26.5 450 138-684 11-475 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1.9E-35 6.4E-40 324.9 20.3 198 567-930 2-210 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 3.3E-28 1.1E-32 283.9 29.2 288 138-583 15-325 (439)
15 3mca_A HBS1, elongation factor 100.0 1E-29 3.4E-34 306.3 16.6 319 95-583 144-487 (592)
16 1d2e_A Elongation factor TU (E 100.0 9.4E-29 3.2E-33 285.1 22.5 280 141-583 4-288 (397)
17 2c78_A Elongation factor TU-A; 100.0 3.6E-28 1.2E-32 281.0 21.4 293 138-583 9-306 (405)
18 1jny_A EF-1-alpha, elongation 100.0 4.3E-28 1.5E-32 282.8 21.2 289 138-583 4-315 (435)
19 1g7s_A Translation initiation 100.0 1.1E-28 3.8E-33 296.4 15.0 329 139-626 4-373 (594)
20 1r5b_A Eukaryotic peptide chai 99.9 1.8E-27 6.2E-32 279.7 20.5 299 127-583 32-354 (467)
21 3p26_A Elongation factor 1 alp 99.9 9E-27 3.1E-31 275.2 23.6 298 138-583 31-360 (483)
22 3avx_A Elongation factor TS, e 99.9 9.5E-27 3.2E-31 289.4 21.6 283 137-583 293-579 (1289)
23 1f60_A Elongation factor EEF1A 99.9 1.3E-26 4.5E-31 271.7 20.2 300 137-583 4-326 (458)
24 2elf_A Protein translation elo 99.9 7.8E-26 2.7E-30 257.8 24.9 121 140-304 21-143 (370)
25 3izq_1 HBS1P, elongation facto 99.9 1.6E-26 5.5E-31 279.2 18.2 304 132-583 159-494 (611)
26 1zun_B Sulfate adenylate trans 99.9 8.4E-26 2.9E-30 263.4 23.5 287 138-583 22-324 (434)
27 1kk1_A EIF2gamma; initiation o 99.9 3.3E-25 1.1E-29 256.6 27.1 125 137-277 7-151 (410)
28 1s0u_A EIF-2-gamma, translatio 99.9 7.3E-24 2.5E-28 245.2 23.7 124 138-277 6-149 (408)
29 1wb1_A Translation elongation 99.9 7.4E-25 2.5E-29 258.2 12.7 139 139-304 18-156 (482)
30 3sjy_A Translation initiation 99.9 2.9E-23 9.8E-28 239.8 24.5 153 138-304 6-160 (403)
31 1zo1_I IF2, translation initia 99.9 8.1E-25 2.8E-29 256.9 7.1 116 138-277 2-117 (501)
32 3izy_P Translation initiation 99.9 4.2E-24 1.4E-28 252.8 5.6 255 140-584 4-258 (537)
33 2hjg_A GTP-binding protein ENG 99.6 1.1E-14 3.6E-19 169.8 12.5 151 139-332 174-335 (436)
34 1wf3_A GTP-binding protein; GT 99.5 2.3E-14 7.9E-19 158.8 14.5 117 138-277 5-131 (301)
35 3iev_A GTP-binding protein ERA 99.5 5E-14 1.7E-18 156.6 15.4 117 137-276 7-135 (308)
36 3t1o_A Gliding protein MGLA; G 99.5 1.2E-13 4.1E-18 141.2 13.4 129 138-277 12-149 (198)
37 4dcu_A GTP-binding protein ENG 99.5 6.8E-14 2.3E-18 163.9 12.9 152 138-332 193-355 (456)
38 1ega_A Protein (GTP-binding pr 99.5 2.7E-14 9.4E-19 158.2 8.3 115 139-277 7-130 (301)
39 4dhe_A Probable GTP-binding pr 99.5 9E-14 3.1E-18 145.9 11.5 118 138-277 27-158 (223)
40 3qq5_A Small GTP-binding prote 99.5 1.1E-14 3.6E-19 168.3 4.4 119 137-279 31-156 (423)
41 2dyk_A GTP-binding protein; GT 99.5 2.8E-13 9.4E-18 133.9 13.3 115 140-277 1-122 (161)
42 2lkc_A Translation initiation 99.4 4.5E-14 1.6E-18 142.1 6.0 117 137-277 5-121 (178)
43 1svi_A GTP-binding protein YSX 99.4 7.8E-13 2.7E-17 135.4 14.4 148 138-332 21-181 (195)
44 1wms_A RAB-9, RAB9, RAS-relate 99.4 6.8E-13 2.3E-17 133.3 13.4 119 136-276 3-129 (177)
45 2xtp_A GTPase IMAP family memb 99.4 4.4E-13 1.5E-17 144.8 12.1 117 138-277 20-153 (260)
46 1vg8_A RAS-related protein RAB 99.4 4.2E-13 1.5E-17 138.7 10.1 118 137-276 5-130 (207)
47 3pqc_A Probable GTP-binding pr 99.4 2.5E-12 8.5E-17 131.2 15.6 147 138-332 21-180 (195)
48 3iby_A Ferrous iron transport 99.4 2.4E-13 8.3E-18 147.1 8.2 112 140-277 1-124 (256)
49 1z0f_A RAB14, member RAS oncog 99.4 1.2E-12 4E-17 131.5 11.9 119 137-277 12-134 (179)
50 2fn4_A P23, RAS-related protei 99.4 1.3E-12 4.4E-17 131.5 11.6 119 136-277 5-128 (181)
51 3tkl_A RAS-related protein RAB 99.4 9.6E-13 3.3E-17 134.7 10.3 121 135-277 11-135 (196)
52 2bme_A RAB4A, RAS-related prot 99.4 1.2E-12 4.2E-17 132.7 10.6 119 137-277 7-129 (186)
53 1fzq_A ADP-ribosylation factor 99.4 9.1E-12 3.1E-16 126.7 17.0 121 130-277 6-131 (181)
54 1mky_A Probable GTP-binding pr 99.4 1.7E-12 5.9E-17 151.3 12.7 113 141-276 2-123 (439)
55 4dsu_A GTPase KRAS, isoform 2B 99.4 4E-12 1.4E-16 129.0 13.6 114 141-277 5-123 (189)
56 3lxw_A GTPase IMAP family memb 99.4 3E-12 1E-16 137.7 13.2 115 140-277 21-153 (247)
57 2p5s_A RAS and EF-hand domain 99.4 3.2E-12 1.1E-16 131.9 12.6 117 138-276 26-146 (199)
58 3tw8_B RAS-related protein RAB 99.4 4.2E-13 1.4E-17 135.1 5.7 123 133-277 2-127 (181)
59 1kao_A RAP2A; GTP-binding prot 99.3 4.3E-12 1.5E-16 125.5 12.6 114 141-277 4-122 (167)
60 2y8e_A RAB-protein 6, GH09086P 99.3 2.1E-12 7.2E-17 129.6 10.3 121 135-277 9-133 (179)
61 2efe_B Small GTP-binding prote 99.3 1.7E-12 5.8E-17 130.9 9.4 118 138-277 10-131 (181)
62 3k53_A Ferrous iron transport 99.3 1.5E-12 5E-17 141.9 9.5 112 139-276 2-122 (271)
63 2fh5_B SR-beta, signal recogni 99.3 4E-12 1.4E-16 132.5 12.5 117 136-277 3-129 (214)
64 3kkq_A RAS-related protein M-R 99.3 3.5E-12 1.2E-16 129.2 11.6 117 138-277 16-137 (183)
65 2hjg_A GTP-binding protein ENG 99.3 1.1E-12 3.7E-17 152.8 8.9 113 141-276 4-124 (436)
66 2il1_A RAB12; G-protein, GDP, 99.3 1.9E-12 6.4E-17 133.0 9.7 117 139-277 25-145 (192)
67 2a9k_A RAS-related protein RAL 99.3 5.1E-12 1.8E-16 127.7 12.7 118 137-277 15-137 (187)
68 1mky_A Probable GTP-binding pr 99.3 6.3E-12 2.2E-16 146.5 15.2 151 139-332 179-341 (439)
69 1zd9_A ADP-ribosylation factor 99.3 6.7E-12 2.3E-16 128.3 13.4 112 140-277 22-138 (188)
70 4dcu_A GTP-binding protein ENG 99.3 1.1E-12 3.9E-17 153.6 8.4 115 139-276 22-144 (456)
71 1ky3_A GTP-binding protein YPT 99.3 3.4E-12 1.2E-16 128.5 10.8 120 137-277 5-132 (182)
72 3bc1_A RAS-related protein RAB 99.3 4.8E-12 1.7E-16 128.6 11.8 123 137-277 8-141 (195)
73 1u8z_A RAS-related protein RAL 99.3 8.2E-12 2.8E-16 123.6 13.2 115 140-277 4-123 (168)
74 2g6b_A RAS-related protein RAB 99.3 2.6E-12 9E-17 129.4 9.7 120 137-277 7-130 (180)
75 3gee_A MNME, tRNA modification 99.3 3.6E-13 1.2E-17 158.0 3.7 111 142-277 235-357 (476)
76 1ek0_A Protein (GTP-binding pr 99.3 4.3E-12 1.5E-16 126.0 10.8 115 141-277 4-122 (170)
77 1c1y_A RAS-related protein RAP 99.3 5.2E-12 1.8E-16 125.2 11.4 114 141-277 4-122 (167)
78 2ew1_A RAS-related protein RAB 99.3 3.2E-12 1.1E-16 132.8 10.2 122 134-277 20-145 (201)
79 2erx_A GTP-binding protein DI- 99.3 8.1E-12 2.8E-16 124.3 12.7 114 141-277 4-123 (172)
80 1g16_A RAS-related protein SEC 99.3 2.4E-12 8.1E-17 128.1 8.5 115 140-276 3-121 (170)
81 1r2q_A RAS-related protein RAB 99.3 3.7E-12 1.3E-16 126.5 9.9 117 139-277 5-125 (170)
82 1z2a_A RAS-related protein RAB 99.3 2.6E-12 8.9E-17 127.6 8.7 118 138-277 3-123 (168)
83 2b6h_A ADP-ribosylation factor 99.3 1.4E-11 4.9E-16 126.6 14.4 113 138-277 27-144 (192)
84 3clv_A RAB5 protein, putative; 99.3 4.9E-12 1.7E-16 129.4 10.7 64 211-274 93-158 (208)
85 1z06_A RAS-related protein RAB 99.3 3.1E-12 1.1E-16 130.6 9.0 117 139-277 19-141 (189)
86 4bas_A ADP-ribosylation factor 99.3 2.3E-12 8E-17 132.1 8.1 116 137-277 14-141 (199)
87 2hup_A RAS-related protein RAB 99.3 8.6E-12 2.9E-16 129.2 12.2 118 138-277 27-148 (201)
88 1upt_A ARL1, ADP-ribosylation 99.3 2.9E-12 9.9E-17 127.8 8.2 112 139-277 6-122 (171)
89 1zbd_A Rabphilin-3A; G protein 99.3 5.9E-12 2E-16 130.0 10.8 117 139-277 7-127 (203)
90 2ce2_X GTPase HRAS; signaling 99.3 1.4E-11 4.7E-16 121.5 13.0 114 141-277 4-122 (166)
91 2h17_A ADP-ribosylation factor 99.3 6.9E-12 2.3E-16 127.3 11.0 112 139-277 20-136 (181)
92 2oil_A CATX-8, RAS-related pro 99.3 5.8E-12 2E-16 128.9 10.5 118 138-277 23-144 (193)
93 2gf0_A GTP-binding protein DI- 99.3 1.1E-11 3.6E-16 127.2 12.5 117 138-277 6-128 (199)
94 3i8s_A Ferrous iron transport 99.3 3.8E-12 1.3E-16 139.0 9.4 111 141-277 4-126 (274)
95 2f7s_A C25KG, RAS-related prot 99.3 7.3E-12 2.5E-16 130.8 11.1 121 138-277 23-155 (217)
96 3t5g_A GTP-binding protein RHE 99.3 2.9E-12 9.8E-17 129.5 7.7 115 139-276 5-124 (181)
97 2fg5_A RAB-22B, RAS-related pr 99.3 6.5E-12 2.2E-16 128.8 10.5 118 138-277 21-142 (192)
98 1r8s_A ADP-ribosylation factor 99.3 1.1E-11 3.8E-16 122.8 11.5 109 142-277 2-115 (164)
99 2bov_A RAla, RAS-related prote 99.3 1.8E-11 6.2E-16 126.1 13.4 117 138-277 12-133 (206)
100 2gf9_A RAS-related protein RAB 99.3 4.1E-12 1.4E-16 129.8 8.4 118 138-277 20-141 (189)
101 1jwy_B Dynamin A GTPase domain 99.3 8.2E-12 2.8E-16 138.5 11.5 68 210-277 130-212 (315)
102 4djt_A GTP-binding nuclear pro 99.3 1.7E-12 5.7E-17 135.8 5.5 120 137-277 8-131 (218)
103 2fu5_C RAS-related protein RAB 99.3 1.7E-12 5.7E-17 131.5 5.3 118 138-277 6-127 (183)
104 1x3s_A RAS-related protein RAB 99.3 5.5E-12 1.9E-16 128.8 8.9 116 139-276 14-134 (195)
105 1mh1_A RAC1; GTP-binding, GTPa 99.3 6.3E-12 2.2E-16 127.1 9.2 114 141-277 6-123 (186)
106 4gzl_A RAS-related C3 botulinu 99.3 3.4E-12 1.2E-16 132.5 7.4 116 139-277 29-148 (204)
107 2gj8_A MNME, tRNA modification 99.3 2.4E-11 8.3E-16 122.7 13.4 112 142-276 6-128 (172)
108 2a5j_A RAS-related protein RAB 99.3 5.2E-12 1.8E-16 129.3 8.5 118 138-277 19-140 (191)
109 2bcg_Y Protein YP2, GTP-bindin 99.3 4E-12 1.4E-16 131.7 7.7 119 137-277 5-127 (206)
110 2h57_A ADP-ribosylation factor 99.3 3.6E-12 1.2E-16 130.3 7.1 114 139-277 20-140 (190)
111 3def_A T7I23.11 protein; chlor 99.3 1.5E-11 5.1E-16 133.3 12.2 116 138-276 34-164 (262)
112 3dz8_A RAS-related protein RAB 99.3 5.4E-12 1.8E-16 129.2 8.3 118 138-277 21-142 (191)
113 2qu8_A Putative nucleolar GTP- 99.3 3.4E-11 1.2E-15 127.2 14.6 116 138-277 27-156 (228)
114 3llu_A RAS-related GTP-binding 99.3 3.1E-11 1.1E-15 124.2 14.0 119 137-277 17-143 (196)
115 2hxs_A RAB-26, RAS-related pro 99.3 7.2E-12 2.5E-16 125.9 9.0 118 139-277 5-129 (178)
116 3cph_A RAS-related protein SEC 99.3 6.1E-12 2.1E-16 130.6 8.5 117 138-276 18-138 (213)
117 1z0j_A RAB-22, RAS-related pro 99.3 1E-11 3.4E-16 123.6 9.6 116 140-277 6-125 (170)
118 1z08_A RAS-related protein RAB 99.3 5.1E-12 1.7E-16 125.9 7.4 117 139-277 5-125 (170)
119 3reg_A RHO-like small GTPase; 99.3 6.7E-12 2.3E-16 128.7 8.2 117 138-277 21-141 (194)
120 1nrj_B SR-beta, signal recogni 99.3 4.4E-11 1.5E-15 125.0 14.6 112 138-277 10-134 (218)
121 2wji_A Ferrous iron transport 99.3 2.1E-11 7.2E-16 121.9 11.5 111 141-277 4-122 (165)
122 3q72_A GTP-binding protein RAD 99.3 7.2E-12 2.5E-16 124.4 8.0 113 141-277 3-120 (166)
123 1ksh_A ARF-like protein 2; sma 99.2 5.4E-12 1.8E-16 128.2 7.2 113 138-277 16-133 (186)
124 2o52_A RAS-related protein RAB 99.2 6.1E-12 2.1E-16 130.1 7.6 117 139-277 24-144 (200)
125 3con_A GTPase NRAS; structural 99.2 2E-11 7E-16 124.4 11.4 114 141-277 22-140 (190)
126 1zj6_A ADP-ribosylation factor 99.2 1.2E-11 4.2E-16 125.9 9.7 113 138-277 14-131 (187)
127 3a1s_A Iron(II) transport prot 99.2 1.2E-11 4E-16 134.0 9.9 113 139-277 4-124 (258)
128 1moz_A ARL1, ADP-ribosylation 99.2 6.1E-12 2.1E-16 127.2 7.2 113 138-277 16-133 (183)
129 2wjg_A FEOB, ferrous iron tran 99.2 2.2E-11 7.5E-16 123.8 11.3 113 139-277 6-126 (188)
130 2atx_A Small GTP binding prote 99.2 8.3E-12 2.8E-16 127.9 8.0 116 139-277 17-136 (194)
131 1m2o_B GTP-binding protein SAR 99.2 7.6E-12 2.6E-16 128.4 7.5 111 140-277 23-138 (190)
132 3q85_A GTP-binding protein REM 99.2 2.1E-11 7.3E-16 121.3 10.6 116 140-277 2-123 (169)
133 3t5d_A Septin-7; GTP-binding p 99.2 4.7E-11 1.6E-15 130.2 14.0 122 141-277 9-158 (274)
134 3geh_A MNME, tRNA modification 99.2 3.3E-12 1.1E-16 149.3 5.0 111 142-277 226-344 (462)
135 3cpj_B GTP-binding protein YPT 99.2 6.7E-12 2.3E-16 132.1 6.9 119 137-277 10-132 (223)
136 1m7b_A RND3/RHOE small GTP-bin 99.2 1.2E-11 4.1E-16 125.8 8.3 117 138-277 5-125 (184)
137 3bwd_D RAC-like GTP-binding pr 99.2 6.1E-12 2.1E-16 126.9 5.9 116 139-277 7-126 (182)
138 2nzj_A GTP-binding protein REM 99.2 3.4E-11 1.2E-15 120.5 11.2 115 140-277 4-125 (175)
139 2q3h_A RAS homolog gene family 99.2 1.8E-11 6.2E-16 126.1 9.2 117 138-277 18-138 (201)
140 2j0v_A RAC-like GTP-binding pr 99.2 1.4E-11 4.8E-16 128.2 8.4 116 139-277 8-127 (212)
141 2atv_A RERG, RAS-like estrogen 99.2 6.8E-11 2.3E-15 121.5 13.4 115 139-277 27-146 (196)
142 3lxx_A GTPase IMAP family memb 99.2 2.6E-11 8.9E-16 129.2 10.5 118 137-277 26-159 (239)
143 1xzp_A Probable tRNA modificat 99.2 2.9E-11 1E-15 141.9 11.9 110 142-276 245-363 (482)
144 3oes_A GTPase rhebl1; small GT 99.2 7.9E-12 2.7E-16 129.1 6.3 116 139-277 23-143 (201)
145 2fv8_A H6, RHO-related GTP-bin 99.2 2E-11 6.8E-16 126.8 9.3 115 140-277 25-143 (207)
146 3o47_A ADP-ribosylation factor 99.2 2.9E-11 9.9E-16 135.6 11.2 110 141-277 166-280 (329)
147 2gco_A H9, RHO-related GTP-bin 99.2 2.1E-11 7.1E-16 126.1 9.2 115 140-277 25-143 (201)
148 2qpt_A EH domain-containing pr 99.2 3.7E-11 1.3E-15 143.6 12.6 67 211-277 154-232 (550)
149 3gj0_A GTP-binding nuclear pro 99.2 1.3E-11 4.6E-16 129.4 7.7 119 137-277 12-133 (221)
150 1h65_A Chloroplast outer envel 99.2 6.7E-11 2.3E-15 128.7 13.3 116 138-276 37-167 (270)
151 2yc2_C IFT27, small RAB-relate 99.2 9.1E-12 3.1E-16 128.4 6.1 118 140-277 20-146 (208)
152 2ged_A SR-beta, signal recogni 99.2 2.4E-11 8.3E-16 124.2 9.2 112 138-277 46-170 (193)
153 1f6b_A SAR1; gtpases, N-termin 99.2 1E-11 3.5E-16 128.4 6.3 113 138-277 23-140 (198)
154 2j1l_A RHO-related GTP-binding 99.2 2.9E-11 1E-15 126.4 9.8 115 140-277 34-152 (214)
155 3l0i_B RAS-related protein RAB 99.2 1.5E-12 5.2E-17 134.3 -0.5 119 137-277 30-152 (199)
156 1gwn_A RHO-related GTP-binding 99.2 2.8E-11 9.5E-16 126.1 8.1 117 138-277 26-146 (205)
157 2x77_A ADP-ribosylation factor 99.2 7.9E-12 2.7E-16 127.5 3.7 112 139-277 21-137 (189)
158 3q3j_B RHO-related GTP-binding 99.2 4E-11 1.4E-15 125.6 8.6 115 140-277 27-145 (214)
159 3c5c_A RAS-like protein 12; GD 99.2 1.1E-10 3.6E-15 119.4 11.4 115 139-277 20-141 (187)
160 3r7w_A Gtpase1, GTP-binding pr 99.2 4.7E-11 1.6E-15 132.5 9.4 115 141-277 4-129 (307)
161 2aka_B Dynamin-1; fusion prote 99.1 7.2E-11 2.5E-15 129.7 10.5 68 210-277 124-206 (299)
162 3ihw_A Centg3; RAS, centaurin, 99.1 1.6E-10 5.5E-15 117.9 12.1 108 140-276 20-132 (184)
163 2iwr_A Centaurin gamma 1; ANK 99.1 1.2E-10 4.1E-15 117.2 11.0 108 140-276 7-121 (178)
164 3th5_A RAS-related C3 botulinu 98.8 4E-12 1.4E-16 131.6 0.0 116 139-277 29-148 (204)
165 3b1v_A Ferrous iron uptake tra 99.1 9.7E-11 3.3E-15 127.7 9.6 111 140-277 3-121 (272)
166 3lvq_E ARF-GAP with SH3 domain 99.1 2E-10 6.8E-15 135.9 10.9 112 139-277 321-437 (497)
167 2j69_A Bacterial dynamin-like 99.1 5.4E-10 1.8E-14 137.1 14.6 68 211-278 174-245 (695)
168 3cbq_A GTP-binding protein REM 99.1 1.9E-10 6.4E-15 118.7 8.9 117 139-277 22-144 (195)
169 1lnz_A SPO0B-associated GTP-bi 99.1 1.8E-10 6.1E-15 129.6 9.1 114 140-276 158-287 (342)
170 2cxx_A Probable GTP-binding pr 99.1 1.3E-10 4.4E-15 118.0 6.7 109 141-277 2-136 (190)
171 4dkx_A RAS-related protein RAB 99.0 5.3E-10 1.8E-14 117.7 11.2 119 137-277 10-132 (216)
172 2e87_A Hypothetical protein PH 99.0 9.4E-10 3.2E-14 124.6 13.2 116 138-277 165-294 (357)
173 2zej_A Dardarin, leucine-rich 99.0 2.7E-10 9.1E-15 116.0 7.6 118 142-276 4-125 (184)
174 2qag_A Septin-2, protein NEDD5 99.0 6.1E-10 2.1E-14 126.4 11.2 155 141-332 38-220 (361)
175 2wkq_A NPH1-1, RAS-related C3 99.0 2.9E-10 1E-14 126.3 7.9 116 139-277 154-273 (332)
176 3t34_A Dynamin-related protein 99.0 9.8E-10 3.3E-14 124.6 12.0 68 210-277 135-217 (360)
177 2p67_A LAO/AO transport system 99.0 5.5E-10 1.9E-14 125.8 8.4 102 209-333 147-248 (341)
178 2wsm_A Hydrogenase expression/ 99.0 2.4E-10 8.3E-15 119.6 3.9 139 127-276 18-167 (221)
179 2qtf_A Protein HFLX, GTP-bindi 98.9 2.6E-09 8.8E-14 121.3 12.2 116 138-277 177-306 (364)
180 3dpu_A RAB family protein; roc 98.9 8.5E-10 2.9E-14 131.7 8.6 121 137-277 38-164 (535)
181 2f9l_A RAB11B, member RAS onco 98.9 1.5E-09 5.1E-14 111.9 8.8 116 140-277 5-124 (199)
182 2x2e_A Dynamin-1; nitration, h 98.9 1.4E-09 4.9E-14 122.9 9.4 68 210-277 129-211 (353)
183 1pui_A ENGB, probable GTP-bind 98.9 4E-09 1.4E-13 109.2 11.8 113 140-277 26-151 (210)
184 3p32_A Probable GTPase RV1496/ 98.9 1E-09 3.5E-14 124.2 7.4 102 209-333 170-271 (355)
185 2g3y_A GTP-binding protein GEM 98.9 3.4E-09 1.2E-13 111.1 10.5 118 139-277 36-159 (211)
186 2cjw_A GTP-binding protein GEM 98.9 6.5E-09 2.2E-13 106.7 10.7 116 140-276 6-127 (192)
187 1wxq_A GTP-binding protein; st 98.8 4E-09 1.4E-13 121.0 7.7 95 142-247 2-114 (397)
188 1oix_A RAS-related protein RAB 98.8 1E-08 3.4E-13 105.2 9.3 117 139-277 28-148 (191)
189 4a9a_A Ribosome-interacting GT 98.8 9.3E-09 3.2E-13 116.6 9.1 115 140-279 72-198 (376)
190 3zvr_A Dynamin-1; hydrolase, D 98.8 1.9E-08 6.6E-13 122.9 11.6 67 211-277 150-231 (772)
191 3r7w_B Gtpase2, GTP-binding pr 98.7 1.4E-08 4.7E-13 112.7 8.8 111 142-277 1-120 (331)
192 3c5h_A Glucocorticoid receptor 98.7 2.7E-08 9.2E-13 107.2 9.3 43 234-276 162-211 (255)
193 2www_A Methylmalonic aciduria 98.7 1.2E-07 4E-12 107.0 13.3 61 209-276 165-225 (349)
194 2j37_W Signal recognition part 98.6 2E-08 7E-13 118.0 5.7 131 138-276 99-253 (504)
195 1udx_A The GTP-binding protein 98.6 1.7E-07 5.8E-12 107.9 12.6 113 141-276 158-282 (416)
196 1yrb_A ATP(GTP)binding protein 98.5 1.4E-07 4.9E-12 101.2 8.0 67 210-277 108-185 (262)
197 1jal_A YCHF protein; nucleotid 98.3 3.9E-07 1.3E-11 102.8 6.9 86 142-246 4-108 (363)
198 2qag_C Septin-7; cell cycle, c 98.3 1.9E-06 6.5E-11 99.2 12.0 121 142-277 33-181 (418)
199 3sop_A Neuronal-specific septi 98.3 4.1E-06 1.4E-10 91.0 13.3 122 142-277 4-154 (270)
200 2qnr_A Septin-2, protein NEDD5 98.3 3.8E-06 1.3E-10 92.7 12.6 123 141-277 19-169 (301)
201 2qag_B Septin-6, protein NEDD5 98.3 5.1E-06 1.7E-10 95.4 13.6 138 137-303 39-206 (427)
202 3h2y_A GTPase family protein; 98.1 7.4E-07 2.5E-11 101.2 3.4 118 141-278 161-288 (368)
203 2qm8_A GTPase/ATPase; G protei 98.1 8.5E-06 2.9E-10 91.3 11.5 61 209-276 146-206 (337)
204 2dby_A GTP-binding protein; GD 98.1 1.5E-06 5.3E-11 98.4 4.7 95 141-247 2-112 (368)
205 3ec1_A YQEH GTPase; atnos1, at 98.1 3.6E-07 1.2E-11 103.9 -1.1 117 141-278 163-289 (369)
206 2ohf_A Protein OLA1, GTP-bindi 98.1 3.3E-06 1.1E-10 96.2 6.6 87 141-246 23-128 (396)
207 2hf9_A Probable hydrogenase ni 98.1 8.6E-07 2.9E-11 92.8 1.7 133 138-277 36-178 (226)
208 2v3c_C SRP54, signal recogniti 98.0 7.9E-06 2.7E-10 94.6 9.5 65 209-276 179-251 (432)
209 3kl4_A SRP54, signal recogniti 97.9 8.6E-06 2.9E-10 94.0 7.0 66 209-276 178-251 (433)
210 1j8m_F SRP54, signal recogniti 97.8 1.1E-05 3.7E-10 88.9 5.5 65 209-276 179-252 (297)
211 2xxa_A Signal recognition part 97.8 1.1E-05 3.9E-10 93.3 5.9 134 138-276 98-253 (433)
212 3dm5_A SRP54, signal recogniti 97.8 8.1E-05 2.8E-09 85.9 12.4 66 209-276 181-252 (443)
213 1f5n_A Interferon-induced guan 97.7 4.6E-05 1.6E-09 91.1 8.6 116 126-259 24-145 (592)
214 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 7.2E-05 2.5E-09 85.2 9.5 99 138-246 18-127 (392)
215 1tq4_A IIGP1, interferon-induc 97.5 0.00017 5.9E-09 82.7 9.3 116 142-279 71-191 (413)
216 3e1y_E Eukaryotic peptide chai 97.4 0.0002 7E-09 74.2 7.2 82 486-583 3-87 (204)
217 1cip_A Protein (guanine nucleo 97.4 6.7E-05 2.3E-09 84.5 3.6 68 209-276 191-273 (353)
218 4dzz_A Plasmid partitioning pr 97.4 0.00044 1.5E-08 70.7 9.2 65 209-276 74-143 (206)
219 4fid_A G protein alpha subunit 97.2 0.00016 5.4E-09 80.8 4.2 68 209-276 159-241 (340)
220 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00012 4.3E-09 82.6 2.9 68 209-276 199-281 (362)
221 3ohm_A Guanine nucleotide-bind 97.2 0.00041 1.4E-08 77.1 6.9 71 209-279 165-250 (327)
222 3szr_A Interferon-induced GTP- 97.1 0.001 3.5E-08 80.3 10.4 67 211-277 147-228 (608)
223 1azs_C GS-alpha; complex (lyas 97.1 0.00029 1E-08 80.4 4.6 68 209-276 215-297 (402)
224 1zu4_A FTSY; GTPase, signal re 97.1 0.0005 1.7E-08 76.3 6.3 63 209-276 190-267 (320)
225 1u0l_A Probable GTPase ENGC; p 96.9 0.00062 2.1E-08 74.9 5.5 63 212-276 64-128 (301)
226 3q5d_A Atlastin-1; G protein, 96.9 0.0039 1.3E-07 72.1 12.4 128 124-257 47-191 (447)
227 2ffh_A Protein (FFH); SRP54, s 96.9 0.00038 1.3E-08 80.1 3.7 65 209-276 179-250 (425)
228 1puj_A YLQF, conserved hypothe 96.8 0.0022 7.4E-08 69.9 8.5 61 215-277 3-64 (282)
229 2yhs_A FTSY, cell division pro 96.7 0.0013 4.4E-08 76.7 6.0 65 209-276 374-451 (503)
230 3e70_C DPA, signal recognition 96.7 0.0012 4.2E-08 73.4 5.6 65 210-276 211-281 (328)
231 2xtz_A Guanine nucleotide-bind 96.7 0.00056 1.9E-08 77.0 2.7 69 209-277 181-264 (354)
232 1puj_A YLQF, conserved hypothe 96.6 0.0016 5.6E-08 70.9 5.6 25 139-163 119-143 (282)
233 1vma_A Cell division protein F 96.6 0.0012 4E-08 72.9 4.5 25 139-163 103-127 (306)
234 2px0_A Flagellar biosynthesis 96.6 0.003 1E-07 69.3 7.3 64 209-276 181-252 (296)
235 1ls1_A Signal recognition part 96.5 0.001 3.5E-08 72.9 2.8 65 209-276 179-250 (295)
236 1rj9_A FTSY, signal recognitio 96.3 0.0045 1.5E-07 68.1 6.6 63 211-276 185-260 (304)
237 3k9g_A PF-32 protein; ssgcid, 96.3 0.012 3.9E-07 63.0 9.6 66 209-276 143-210 (267)
238 3end_A Light-independent proto 96.2 0.0035 1.2E-07 68.7 5.4 66 209-275 155-225 (307)
239 3cnl_A YLQF, putative uncharac 96.1 0.003 1E-07 68.0 3.8 23 141-163 100-122 (262)
240 3cnl_A YLQF, putative uncharac 96.1 0.0033 1.1E-07 67.7 4.1 55 219-277 5-60 (262)
241 3ec1_A YQEH GTPase; atnos1, at 95.9 0.012 4.2E-07 66.4 7.9 62 213-277 51-112 (369)
242 2yv5_A YJEQ protein; hydrolase 95.8 0.0067 2.3E-07 66.6 5.2 47 230-276 75-123 (302)
243 1vi7_A Hypothetical protein YI 95.3 0.028 9.7E-07 58.1 7.5 109 799-913 94-202 (217)
244 2ph1_A Nucleotide-binding prot 95.1 0.034 1.2E-06 59.3 7.7 67 209-275 127-194 (262)
245 3h2y_A GTPase family protein; 95.0 0.023 8E-07 64.1 6.3 55 221-277 56-110 (368)
246 2cve_A Hypothetical protein TT 94.8 0.067 2.3E-06 54.2 8.2 110 798-913 81-190 (191)
247 2og2_A Putative signal recogni 94.5 0.037 1.3E-06 62.2 6.2 63 211-276 241-316 (359)
248 3b9q_A Chloroplast SRP recepto 94.4 0.037 1.3E-06 60.7 5.8 63 211-276 184-259 (302)
249 4ido_A Atlastin-1; GTPase, GTP 94.3 0.3 1E-05 56.2 13.1 128 124-256 47-190 (457)
250 2yv5_A YJEQ protein; hydrolase 94.1 0.039 1.3E-06 60.4 5.3 20 142-161 167-186 (302)
251 3cwq_A Para family chromosome 93.5 0.065 2.2E-06 55.2 5.2 66 209-276 66-133 (209)
252 1cp2_A CP2, nitrogenase iron p 93.2 0.081 2.8E-06 56.3 5.6 67 209-275 114-186 (269)
253 1hyq_A MIND, cell division inh 93.1 0.094 3.2E-06 55.6 5.9 66 209-276 109-175 (263)
254 1wcv_1 SOJ, segregation protei 93.0 0.21 7.3E-06 52.8 8.5 66 209-276 110-182 (257)
255 2afh_E Nitrogenase iron protei 92.9 0.1 3.5E-06 56.3 5.9 67 209-275 117-189 (289)
256 3bfv_A CAPA1, CAPB2, membrane 92.8 0.13 4.3E-06 55.5 6.5 66 210-276 191-257 (271)
257 2oze_A ORF delta'; para, walke 92.3 0.26 8.9E-06 53.2 8.2 66 209-276 153-225 (298)
258 1g3q_A MIND ATPase, cell divis 92.2 0.15 5E-06 53.0 5.8 66 209-276 110-176 (237)
259 1u0l_A Probable GTPase ENGC; p 92.2 0.076 2.6E-06 58.1 3.7 22 142-163 171-192 (301)
260 3cio_A ETK, tyrosine-protein k 92.1 0.21 7.2E-06 54.5 7.1 66 210-276 213-279 (299)
261 3kjh_A CO dehydrogenase/acetyl 92.1 0.094 3.2E-06 54.7 4.1 65 209-275 130-195 (254)
262 3q9l_A Septum site-determining 92.0 0.13 4.6E-06 54.1 5.3 65 210-276 113-186 (260)
263 1ye8_A Protein THEP1, hypothet 92.0 0.081 2.8E-06 53.2 3.4 24 142-165 2-25 (178)
264 1t9h_A YLOQ, probable GTPase E 91.9 0.046 1.6E-06 60.1 1.5 22 141-162 174-195 (307)
265 1lvg_A Guanylate kinase, GMP k 91.7 0.081 2.8E-06 54.0 3.1 23 141-163 5-27 (198)
266 1xe1_A Hypothetical protein PF 91.7 0.82 2.8E-05 42.4 9.4 65 488-569 33-97 (116)
267 3la6_A Tyrosine-protein kinase 91.5 0.21 7.2E-06 54.2 6.2 66 210-276 201-267 (286)
268 1kgd_A CASK, peripheral plasma 91.4 0.11 3.9E-06 51.9 3.7 23 141-163 6-28 (180)
269 3a00_A Guanylate kinase, GMP k 91.1 0.1 3.5E-06 52.4 3.0 23 141-163 2-24 (186)
270 3bos_A Putative DNA replicatio 90.6 0.3 1E-05 50.2 6.1 25 139-163 51-75 (242)
271 3kb2_A SPBC2 prophage-derived 90.5 0.14 4.7E-06 50.1 3.3 24 141-164 2-25 (173)
272 3c8u_A Fructokinase; YP_612366 90.5 0.12 4.2E-06 52.8 3.0 24 139-162 21-44 (208)
273 1t9h_A YLOQ, probable GTPase E 90.4 0.15 5.2E-06 55.9 3.9 47 231-277 83-131 (307)
274 3tr0_A Guanylate kinase, GMP k 90.4 0.13 4.5E-06 52.0 3.1 22 142-163 9-30 (205)
275 4eun_A Thermoresistant glucoki 90.3 0.16 5.3E-06 51.7 3.6 34 131-165 21-54 (200)
276 1znw_A Guanylate kinase, GMP k 90.2 0.14 4.7E-06 52.4 3.1 22 142-163 22-43 (207)
277 2bbw_A Adenylate kinase 4, AK4 90.2 0.17 5.8E-06 53.2 3.8 36 127-165 17-52 (246)
278 3asz_A Uridine kinase; cytidin 90.1 0.15 5.1E-06 52.1 3.2 23 141-163 7-29 (211)
279 3ea0_A ATPase, para family; al 90.1 0.24 8.3E-06 51.5 4.9 65 210-276 118-185 (245)
280 1knq_A Gluconate kinase; ALFA/ 90.0 0.2 7E-06 49.4 4.1 26 140-165 8-33 (175)
281 1kag_A SKI, shikimate kinase I 90.0 0.16 5.6E-06 49.8 3.3 23 141-163 5-27 (173)
282 1bif_A 6-phosphofructo-2-kinas 89.8 0.083 2.8E-06 61.5 1.1 24 140-163 39-62 (469)
283 1htw_A HI0065; nucleotide-bind 89.7 0.17 5.7E-06 50.0 3.1 23 142-164 35-57 (158)
284 1zp6_A Hypothetical protein AT 89.7 0.19 6.5E-06 50.2 3.6 22 141-162 10-31 (191)
285 3zvl_A Bifunctional polynucleo 89.7 0.71 2.4E-05 52.7 8.8 26 139-164 257-282 (416)
286 1z6g_A Guanylate kinase; struc 89.5 0.17 5.7E-06 52.5 3.1 22 142-163 25-46 (218)
287 1xjc_A MOBB protein homolog; s 89.5 0.2 6.9E-06 50.0 3.5 25 139-163 3-27 (169)
288 1np6_A Molybdopterin-guanine d 89.4 0.21 7.1E-06 50.1 3.6 24 140-163 6-29 (174)
289 1uf9_A TT1252 protein; P-loop, 89.4 0.23 7.8E-06 50.0 3.9 26 138-163 6-31 (203)
290 4fcw_A Chaperone protein CLPB; 89.3 0.85 2.9E-05 49.2 8.8 29 135-163 41-70 (311)
291 2c95_A Adenylate kinase 1; tra 89.2 0.21 7E-06 50.1 3.4 25 140-164 9-33 (196)
292 3ney_A 55 kDa erythrocyte memb 89.1 0.25 8.5E-06 50.6 3.9 25 140-164 19-43 (197)
293 3lw7_A Adenylate kinase relate 89.0 0.22 7.6E-06 48.4 3.4 24 141-165 2-25 (179)
294 1ex7_A Guanylate kinase; subst 88.9 0.2 6.9E-06 50.8 3.1 24 141-164 2-25 (186)
295 1cke_A CK, MSSA, protein (cyti 88.9 0.24 8.2E-06 51.0 3.8 23 141-163 6-28 (227)
296 3tau_A Guanylate kinase, GMP k 88.9 0.21 7.3E-06 51.1 3.3 25 140-164 8-32 (208)
297 4gp7_A Metallophosphoesterase; 88.8 0.19 6.5E-06 49.8 2.8 20 142-161 11-30 (171)
298 1s96_A Guanylate kinase, GMP k 88.8 0.22 7.4E-06 51.9 3.3 24 141-164 17-40 (219)
299 3t61_A Gluconokinase; PSI-biol 88.7 0.25 8.6E-06 50.0 3.7 26 140-165 18-43 (202)
300 2j41_A Guanylate kinase; GMP, 88.7 0.23 7.8E-06 50.2 3.4 23 141-163 7-29 (207)
301 2if2_A Dephospho-COA kinase; a 88.3 0.23 8E-06 50.2 3.2 22 141-162 2-23 (204)
302 2f1r_A Molybdopterin-guanine d 88.3 0.14 5E-06 51.1 1.5 23 141-163 3-25 (171)
303 1byi_A Dethiobiotin synthase; 88.1 1.3 4.3E-05 45.4 8.6 68 209-276 107-180 (224)
304 3tif_A Uncharacterized ABC tra 88.1 0.22 7.5E-06 52.4 2.8 20 142-161 33-52 (235)
305 3vaa_A Shikimate kinase, SK; s 87.8 0.3 1E-05 49.5 3.5 26 140-165 25-50 (199)
306 2pcj_A ABC transporter, lipopr 87.7 0.24 8.1E-06 51.7 2.8 20 142-161 32-51 (224)
307 2bdt_A BH3686; alpha-beta prot 87.6 0.28 9.6E-06 49.1 3.2 21 142-162 4-24 (189)
308 2qor_A Guanylate kinase; phosp 87.5 0.28 9.4E-06 50.0 3.1 24 141-164 13-36 (204)
309 3ec2_A DNA replication protein 87.5 0.26 8.8E-06 49.0 2.8 24 140-163 38-61 (180)
310 3lh2_S 4E10_1VI7A_S0_002_N (T8 87.5 0.32 1.1E-05 41.6 3.0 62 849-913 9-70 (76)
311 3trf_A Shikimate kinase, SK; a 87.5 0.31 1.1E-05 48.4 3.4 25 140-164 5-29 (185)
312 2onk_A Molybdate/tungstate ABC 87.4 0.26 8.9E-06 52.0 2.9 22 141-162 25-46 (240)
313 3b85_A Phosphate starvation-in 87.4 0.26 8.9E-06 50.8 2.8 22 142-163 24-45 (208)
314 3ug7_A Arsenical pump-driving 87.4 1.6 5.5E-05 48.5 9.5 42 235-276 237-279 (349)
315 2qt1_A Nicotinamide riboside k 87.4 0.34 1.2E-05 49.3 3.7 27 137-163 18-44 (207)
316 1ukz_A Uridylate kinase; trans 87.4 0.38 1.3E-05 48.6 4.0 29 137-165 12-40 (203)
317 1nks_A Adenylate kinase; therm 87.3 0.32 1.1E-05 48.3 3.4 23 141-163 2-24 (194)
318 2xj4_A MIPZ; replication, cell 87.3 0.17 5.8E-06 54.6 1.4 65 210-276 103-191 (286)
319 2eyu_A Twitching motility prot 87.1 0.32 1.1E-05 52.0 3.4 23 141-163 26-48 (261)
320 1nij_A Hypothetical protein YJ 87.0 0.29 1E-05 53.8 3.1 25 139-163 3-27 (318)
321 2cbz_A Multidrug resistance-as 87.0 0.26 9E-06 51.8 2.6 20 142-161 33-52 (237)
322 1sxj_A Activator 1 95 kDa subu 86.9 1.6 5.5E-05 51.2 9.6 26 139-164 76-101 (516)
323 1jjv_A Dephospho-COA kinase; P 86.9 0.31 1.1E-05 49.5 3.0 22 141-162 3-24 (206)
324 3pfi_A Holliday junction ATP-d 86.8 2 6.9E-05 46.9 9.9 26 138-163 53-78 (338)
325 3aez_A Pantothenate kinase; tr 86.8 0.3 1E-05 53.7 3.1 24 139-162 89-112 (312)
326 3l82_B F-box only protein 4; T 86.8 0.77 2.6E-05 47.5 5.8 64 213-276 98-176 (227)
327 1g6h_A High-affinity branched- 86.7 0.29 1E-05 52.1 2.8 20 142-161 35-54 (257)
328 1ly1_A Polynucleotide kinase; 86.7 0.33 1.1E-05 47.7 3.0 22 141-162 3-24 (181)
329 2pze_A Cystic fibrosis transme 86.6 0.3 1E-05 51.1 2.8 20 142-161 36-55 (229)
330 1zd8_A GTP:AMP phosphotransfer 86.6 0.39 1.3E-05 49.7 3.7 26 140-165 7-32 (227)
331 1b0u_A Histidine permease; ABC 86.6 0.3 1E-05 52.2 2.8 20 142-161 34-53 (262)
332 2d2e_A SUFC protein; ABC-ATPas 86.5 0.32 1.1E-05 51.6 3.0 21 142-162 31-51 (250)
333 1y63_A LMAJ004144AAA protein; 86.5 0.47 1.6E-05 47.4 4.1 25 139-163 9-33 (184)
334 1mv5_A LMRA, multidrug resista 86.5 0.31 1E-05 51.5 2.8 21 142-162 30-50 (243)
335 2v9p_A Replication protein E1; 86.4 0.35 1.2E-05 53.0 3.3 23 141-163 127-149 (305)
336 1qhx_A CPT, protein (chloramph 86.3 0.42 1.4E-05 47.1 3.6 24 141-164 4-27 (178)
337 1via_A Shikimate kinase; struc 86.3 0.35 1.2E-05 47.7 3.0 23 141-163 5-27 (175)
338 1ji0_A ABC transporter; ATP bi 86.3 0.32 1.1E-05 51.2 2.8 20 142-161 34-53 (240)
339 4g1u_C Hemin import ATP-bindin 86.3 0.31 1.1E-05 52.2 2.8 20 142-161 39-58 (266)
340 2i3b_A HCR-ntpase, human cance 86.3 0.35 1.2E-05 49.0 3.1 22 142-163 3-24 (189)
341 2ff7_A Alpha-hemolysin translo 86.2 0.32 1.1E-05 51.5 2.8 20 142-161 37-56 (247)
342 1sgw_A Putative ABC transporte 86.2 0.33 1.1E-05 50.3 2.8 19 143-161 38-56 (214)
343 3gfo_A Cobalt import ATP-bindi 86.2 0.32 1.1E-05 52.5 2.8 20 142-161 36-55 (275)
344 2jaq_A Deoxyguanosine kinase; 86.2 0.39 1.3E-05 48.2 3.3 23 142-164 2-24 (205)
345 2jeo_A Uridine-cytidine kinase 86.0 0.37 1.3E-05 50.6 3.2 24 142-165 27-50 (245)
346 2ghi_A Transport protein; mult 85.9 0.34 1.2E-05 51.8 2.8 21 142-162 48-68 (260)
347 2ehv_A Hypothetical protein PH 85.9 0.35 1.2E-05 50.2 3.0 20 142-161 32-51 (251)
348 2kjq_A DNAA-related protein; s 85.9 0.38 1.3E-05 46.7 3.0 24 140-163 36-59 (149)
349 2rcn_A Probable GTPase ENGC; Y 85.9 0.35 1.2E-05 54.2 3.0 22 142-163 217-238 (358)
350 2olj_A Amino acid ABC transpor 85.7 0.35 1.2E-05 51.8 2.8 20 142-161 52-71 (263)
351 3lnc_A Guanylate kinase, GMP k 85.6 0.27 9.2E-06 51.1 1.8 21 141-161 28-48 (231)
352 3iij_A Coilin-interacting nucl 85.6 0.44 1.5E-05 47.2 3.3 26 139-164 10-35 (180)
353 2zu0_C Probable ATP-dependent 85.6 0.37 1.3E-05 51.6 2.9 21 142-162 48-68 (267)
354 4a74_A DNA repair and recombin 85.5 0.4 1.4E-05 49.1 3.1 21 142-162 27-47 (231)
355 3jvv_A Twitching mobility prot 85.4 0.47 1.6E-05 53.1 3.8 33 129-163 114-146 (356)
356 1vpl_A ABC transporter, ATP-bi 85.4 0.37 1.3E-05 51.4 2.8 20 142-161 43-62 (256)
357 2qi9_C Vitamin B12 import ATP- 85.4 0.37 1.3E-05 51.1 2.8 20 142-161 28-47 (249)
358 2vli_A Antibiotic resistance p 85.2 0.41 1.4E-05 47.3 2.9 26 140-165 5-30 (183)
359 2yz2_A Putative ABC transporte 85.2 0.38 1.3E-05 51.5 2.8 20 142-161 35-54 (266)
360 2rcn_A Probable GTPase ENGC; Y 85.1 1.2 4.1E-05 49.8 6.9 45 231-277 127-174 (358)
361 2ixe_A Antigen peptide transpo 85.1 0.39 1.3E-05 51.6 2.8 20 142-161 47-66 (271)
362 1d1n_A Initiation factor 2; be 85.0 1.9 6.5E-05 38.8 6.8 66 493-569 10-75 (99)
363 3dl0_A Adenylate kinase; phosp 85.0 0.51 1.7E-05 48.2 3.6 24 142-165 2-25 (216)
364 3uie_A Adenylyl-sulfate kinase 85.0 0.49 1.7E-05 47.9 3.4 24 140-163 25-48 (200)
365 2gza_A Type IV secretion syste 84.9 0.38 1.3E-05 53.9 2.8 22 142-163 177-198 (361)
366 3fb4_A Adenylate kinase; psych 84.9 0.48 1.6E-05 48.3 3.3 24 142-165 2-25 (216)
367 2ihy_A ABC transporter, ATP-bi 84.9 0.4 1.4E-05 51.8 2.8 20 142-161 49-68 (279)
368 1kht_A Adenylate kinase; phosp 84.9 0.45 1.6E-05 47.2 3.1 23 141-163 4-26 (192)
369 2v1u_A Cell division control p 84.9 2.1 7.2E-05 47.2 8.9 26 138-163 42-67 (387)
370 1rz3_A Hypothetical protein rb 84.8 0.6 2.1E-05 47.4 4.0 26 137-162 19-44 (201)
371 3tqc_A Pantothenate kinase; bi 84.7 0.56 1.9E-05 51.7 3.9 26 138-163 90-115 (321)
372 2pt7_A CAG-ALFA; ATPase, prote 84.7 0.36 1.2E-05 53.4 2.4 23 141-163 172-194 (330)
373 2nq2_C Hypothetical ABC transp 84.7 0.41 1.4E-05 50.9 2.8 20 142-161 33-52 (253)
374 3cm0_A Adenylate kinase; ATP-b 84.7 0.5 1.7E-05 46.8 3.3 24 141-164 5-28 (186)
375 1odf_A YGR205W, hypothetical 3 84.5 0.59 2E-05 50.7 3.9 26 137-162 28-53 (290)
376 1sq5_A Pantothenate kinase; P- 84.2 0.48 1.6E-05 51.8 3.1 26 138-163 78-103 (308)
377 2rhm_A Putative kinase; P-loop 84.2 0.61 2.1E-05 46.4 3.6 24 141-164 6-29 (193)
378 3n70_A Transport activator; si 84.1 1.4 4.9E-05 42.0 6.1 25 139-163 23-47 (145)
379 1tev_A UMP-CMP kinase; ploop, 84.1 0.56 1.9E-05 46.6 3.3 25 141-165 4-28 (196)
380 3kta_A Chromosome segregation 83.9 0.54 1.8E-05 46.6 3.1 23 142-164 28-50 (182)
381 2chg_A Replication factor C sm 83.9 3.1 0.00011 41.5 8.9 25 139-163 37-61 (226)
382 1jbk_A CLPB protein; beta barr 83.8 0.93 3.2E-05 44.3 4.8 26 138-163 41-66 (195)
383 2oap_1 GSPE-2, type II secreti 83.8 0.46 1.6E-05 55.9 2.9 23 141-163 261-283 (511)
384 1hqc_A RUVB; extended AAA-ATPa 83.7 2.8 9.5E-05 45.3 9.0 25 139-163 37-61 (324)
385 1zuh_A Shikimate kinase; alpha 83.7 0.6 2.1E-05 45.6 3.3 25 139-163 6-30 (168)
386 3hr8_A Protein RECA; alpha and 83.5 1.7 5.7E-05 48.6 7.2 23 141-163 62-84 (356)
387 2bwj_A Adenylate kinase 5; pho 83.5 0.61 2.1E-05 46.6 3.3 25 141-165 13-37 (199)
388 2bbs_A Cystic fibrosis transme 83.5 0.47 1.6E-05 51.5 2.6 20 142-161 66-85 (290)
389 3io3_A DEHA2D07832P; chaperone 83.4 4 0.00014 45.3 10.3 41 236-276 232-273 (348)
390 4e22_A Cytidylate kinase; P-lo 83.4 0.63 2.2E-05 49.2 3.6 25 141-165 28-52 (252)
391 1qf9_A UMP/CMP kinase, protein 83.4 0.76 2.6E-05 45.5 3.9 25 140-164 6-30 (194)
392 1e6c_A Shikimate kinase; phosp 83.4 0.6 2.1E-05 45.6 3.1 24 141-164 3-26 (173)
393 3tlx_A Adenylate kinase 2; str 83.3 0.7 2.4E-05 48.6 3.8 27 139-165 28-54 (243)
394 2cdn_A Adenylate kinase; phosp 83.3 0.77 2.6E-05 46.3 4.0 28 137-164 17-44 (201)
395 2ze6_A Isopentenyl transferase 83.2 0.62 2.1E-05 49.3 3.4 25 141-165 2-26 (253)
396 2pjz_A Hypothetical protein ST 83.2 0.53 1.8E-05 50.4 2.8 20 142-161 32-51 (263)
397 2ewv_A Twitching motility prot 83.2 0.58 2E-05 52.7 3.3 23 141-163 137-159 (372)
398 2v54_A DTMP kinase, thymidylat 83.1 0.66 2.2E-05 46.7 3.4 23 141-163 5-27 (204)
399 1aky_A Adenylate kinase; ATP:A 83.0 0.69 2.4E-05 47.5 3.6 26 140-165 4-29 (220)
400 2wwf_A Thymidilate kinase, put 83.0 0.76 2.6E-05 46.5 3.8 24 140-163 10-33 (212)
401 2yvu_A Probable adenylyl-sulfa 83.0 0.84 2.9E-05 45.4 4.1 24 140-163 13-36 (186)
402 1zak_A Adenylate kinase; ATP:A 82.9 0.67 2.3E-05 47.6 3.4 26 140-165 5-30 (222)
403 2plr_A DTMP kinase, probable t 82.9 0.65 2.2E-05 46.8 3.3 24 141-164 5-28 (213)
404 3nh6_A ATP-binding cassette SU 82.7 0.38 1.3E-05 52.7 1.5 21 142-162 82-102 (306)
405 2iyv_A Shikimate kinase, SK; t 82.7 0.62 2.1E-05 46.2 2.9 23 142-164 4-26 (184)
406 3tui_C Methionine import ATP-b 82.6 0.58 2E-05 52.5 3.0 21 142-162 56-76 (366)
407 3co5_A Putative two-component 82.6 0.92 3.2E-05 43.3 4.0 22 140-161 27-48 (143)
408 3fvq_A Fe(3+) IONS import ATP- 82.5 0.58 2E-05 52.4 2.9 20 143-162 33-52 (359)
409 2f6r_A COA synthase, bifunctio 82.5 0.7 2.4E-05 49.8 3.5 25 137-161 72-96 (281)
410 2pbr_A DTMP kinase, thymidylat 82.4 0.66 2.3E-05 46.1 3.1 21 142-162 2-22 (195)
411 2pt5_A Shikimate kinase, SK; a 82.1 0.76 2.6E-05 44.7 3.3 23 142-164 2-24 (168)
412 1uj2_A Uridine-cytidine kinase 82.1 0.81 2.8E-05 48.2 3.8 27 139-165 21-47 (252)
413 1gtv_A TMK, thymidylate kinase 82.1 0.41 1.4E-05 48.6 1.4 22 142-163 2-23 (214)
414 1ak2_A Adenylate kinase isoenz 81.9 0.82 2.8E-05 47.5 3.7 28 138-165 14-41 (233)
415 2yyz_A Sugar ABC transporter, 81.9 0.64 2.2E-05 52.1 3.0 21 142-162 31-51 (359)
416 1ixz_A ATP-dependent metallopr 81.9 0.8 2.7E-05 48.0 3.6 23 141-163 50-72 (254)
417 1z47_A CYSA, putative ABC-tran 81.8 0.65 2.2E-05 51.9 3.0 21 142-162 43-63 (355)
418 1f2t_A RAD50 ABC-ATPase; DNA d 81.8 0.75 2.6E-05 44.6 3.1 21 143-163 26-46 (149)
419 2vhj_A Ntpase P4, P4; non- hyd 81.8 1.2 4.2E-05 49.0 5.0 23 141-163 124-146 (331)
420 2x8a_A Nuclear valosin-contain 81.6 0.82 2.8E-05 49.1 3.6 23 141-163 45-67 (274)
421 1lw7_A Transcriptional regulat 81.5 0.64 2.2E-05 52.0 2.8 24 140-163 170-193 (365)
422 3ez9_A Para; DNA binding, wing 81.4 1.9 6.5E-05 48.8 6.7 65 209-275 246-322 (403)
423 1nn5_A Similar to deoxythymidy 81.4 0.92 3.1E-05 45.9 3.7 23 141-163 10-32 (215)
424 2it1_A 362AA long hypothetical 81.4 0.68 2.3E-05 51.9 2.9 21 142-162 31-51 (362)
425 2p5t_B PEZT; postsegregational 81.2 1.1 3.7E-05 47.4 4.3 27 138-164 30-56 (253)
426 1g29_1 MALK, maltose transport 81.1 0.71 2.4E-05 52.0 3.0 21 142-162 31-51 (372)
427 1e4v_A Adenylate kinase; trans 81.1 0.83 2.8E-05 46.7 3.3 24 142-165 2-25 (214)
428 2pez_A Bifunctional 3'-phospho 81.1 0.78 2.7E-05 45.3 3.0 23 141-163 6-28 (179)
429 1v43_A Sugar-binding transport 81.0 0.72 2.5E-05 51.9 3.0 21 142-162 39-59 (372)
430 3nwj_A ATSK2; P loop, shikimat 80.9 0.77 2.6E-05 48.7 3.0 25 141-165 49-73 (250)
431 1p9r_A General secretion pathw 80.9 0.79 2.7E-05 52.4 3.3 33 129-163 158-190 (418)
432 3rlf_A Maltose/maltodextrin im 80.8 0.73 2.5E-05 52.0 2.9 21 142-162 31-51 (381)
433 3syl_A Protein CBBX; photosynt 80.8 2.8 9.4E-05 45.0 7.5 28 137-164 64-91 (309)
434 2vp4_A Deoxynucleoside kinase; 80.7 0.64 2.2E-05 48.3 2.3 23 141-163 21-43 (230)
435 1gvn_B Zeta; postsegregational 80.7 0.98 3.4E-05 48.8 3.8 27 138-164 31-57 (287)
436 3a4m_A L-seryl-tRNA(SEC) kinas 80.6 0.84 2.9E-05 48.4 3.2 24 140-163 4-27 (260)
437 3lda_A DNA repair protein RAD5 80.5 0.35 1.2E-05 55.1 0.2 22 141-162 179-200 (400)
438 1vht_A Dephospho-COA kinase; s 80.5 0.91 3.1E-05 46.4 3.3 22 141-162 5-26 (218)
439 2z0h_A DTMP kinase, thymidylat 80.3 0.89 3E-05 45.3 3.2 21 142-162 2-22 (197)
440 2p65_A Hypothetical protein PF 80.1 1.1 3.8E-05 43.7 3.7 26 138-163 41-66 (187)
441 2w0m_A SSO2452; RECA, SSPF, un 80.1 0.96 3.3E-05 46.1 3.4 22 141-162 24-45 (235)
442 3pvs_A Replication-associated 80.0 4.3 0.00015 46.7 9.1 26 139-164 49-74 (447)
443 2w58_A DNAI, primosome compone 79.9 1 3.5E-05 45.3 3.4 23 141-163 55-77 (202)
444 3cmu_A Protein RECA, recombina 79.8 3.8 0.00013 55.3 9.5 35 130-164 1415-1451(2050)
445 1iy2_A ATP-dependent metallopr 79.6 1 3.6E-05 48.0 3.6 23 141-163 74-96 (278)
446 3d31_A Sulfate/molybdate ABC t 79.6 0.61 2.1E-05 52.0 1.8 21 142-162 28-48 (348)
447 4a1f_A DNAB helicase, replicat 79.5 1.8 6.1E-05 48.0 5.5 22 142-163 48-69 (338)
448 3gd7_A Fusion complex of cysti 78.9 0.92 3.1E-05 51.4 3.0 20 143-162 50-69 (390)
449 1u94_A RECA protein, recombina 78.9 1.5 5.1E-05 49.0 4.7 24 140-163 63-86 (356)
450 3l2o_B F-box only protein 4; s 78.9 2.9 9.9E-05 45.3 6.6 58 220-277 196-262 (312)
451 2zr9_A Protein RECA, recombina 78.8 2 6.8E-05 47.8 5.7 24 140-163 61-84 (349)
452 1in4_A RUVB, holliday junction 78.7 1.1 3.7E-05 49.4 3.5 26 139-164 50-75 (334)
453 3euj_A Chromosome partition pr 78.6 1.3 4.3E-05 51.6 4.0 23 141-163 30-52 (483)
454 3umf_A Adenylate kinase; rossm 78.5 1.3 4.4E-05 46.0 3.7 28 138-165 27-54 (217)
455 3be4_A Adenylate kinase; malar 78.4 1.2 4E-05 45.8 3.4 25 141-165 6-30 (217)
456 2npi_A Protein CLP1; CLP1-PCF1 78.4 0.99 3.4E-05 52.3 3.1 22 142-163 140-161 (460)
457 2grj_A Dephospho-COA kinase; T 78.3 1.1 3.7E-05 45.5 3.0 25 139-163 11-35 (192)
458 1njg_A DNA polymerase III subu 78.1 1.4 4.7E-05 44.7 3.8 24 140-163 45-68 (250)
459 1q3t_A Cytidylate kinase; nucl 78.0 1.3 4.5E-05 46.0 3.7 29 137-165 13-41 (236)
460 1oxx_K GLCV, glucose, ABC tran 77.9 0.61 2.1E-05 52.1 1.1 21 142-162 33-53 (353)
461 3sr0_A Adenylate kinase; phosp 77.9 1.2 4.2E-05 45.7 3.3 24 142-165 2-25 (206)
462 3u61_B DNA polymerase accessor 77.8 9.3 0.00032 41.3 10.7 41 236-276 105-149 (324)
463 1m7g_A Adenylylsulfate kinase; 77.6 1.2 4E-05 45.5 3.0 23 140-162 25-47 (211)
464 1lv7_A FTSH; alpha/beta domain 77.4 1.2 4.2E-05 46.6 3.3 24 140-163 45-68 (257)
465 2xb4_A Adenylate kinase; ATP-b 77.2 1.3 4.3E-05 45.8 3.3 23 142-164 2-24 (223)
466 1cr0_A DNA primase/helicase; R 77.2 1.2 4E-05 48.0 3.1 22 142-163 37-58 (296)
467 3qf7_A RAD50; ABC-ATPase, ATPa 77.1 1.2 3.9E-05 50.0 3.1 21 143-163 26-46 (365)
468 3ake_A Cytidylate kinase; CMP 77.1 1.3 4.5E-05 44.4 3.3 23 142-164 4-26 (208)
469 3r20_A Cytidylate kinase; stru 76.7 1.4 4.8E-05 46.2 3.4 24 141-164 10-33 (233)
470 2cvh_A DNA repair and recombin 76.6 1.3 4.5E-05 44.9 3.1 21 142-162 22-42 (220)
471 1xp8_A RECA protein, recombina 76.5 2 7E-05 48.1 4.9 23 141-163 75-97 (366)
472 3foz_A TRNA delta(2)-isopenten 76.4 1.7 5.8E-05 47.6 4.0 27 139-165 9-35 (316)
473 1l8q_A Chromosomal replication 76.4 1.7 5.7E-05 47.4 4.1 34 130-163 26-60 (324)
474 1xwi_A SKD1 protein; VPS4B, AA 76.3 5.4 0.00018 43.6 8.2 26 139-164 44-69 (322)
475 2obl_A ESCN; ATPase, hydrolase 76.1 1.4 4.7E-05 49.1 3.4 23 142-164 73-95 (347)
476 3h4m_A Proteasome-activating n 75.9 1.5 5E-05 46.7 3.4 25 139-163 50-74 (285)
477 1sxj_E Activator 1 40 kDa subu 75.6 1.8 6.3E-05 47.5 4.2 26 137-162 33-58 (354)
478 1u0j_A DNA replication protein 75.6 9.7 0.00033 40.6 9.6 37 128-164 91-128 (267)
479 2qp9_X Vacuolar protein sortin 75.0 4.8 0.00016 44.7 7.4 26 139-164 83-108 (355)
480 1svm_A Large T antigen; AAA+ f 74.8 2.2 7.5E-05 48.0 4.6 24 140-163 169-192 (377)
481 1a7j_A Phosphoribulokinase; tr 74.6 1.2 4.2E-05 48.1 2.4 23 140-162 5-27 (290)
482 1n0w_A DNA repair protein RAD5 74.6 1.6 5.6E-05 44.9 3.3 23 141-163 25-47 (243)
483 3io5_A Recombination and repai 74.5 12 0.00039 41.2 10.0 21 143-163 31-51 (333)
484 2ga8_A Hypothetical 39.9 kDa p 74.3 2.1 7.2E-05 47.7 4.2 27 137-163 21-47 (359)
485 1tue_A Replication protein E1; 73.9 1.9 6.5E-05 44.4 3.4 23 141-163 59-81 (212)
486 2qby_A CDC6 homolog 1, cell di 73.8 2.2 7.5E-05 47.0 4.3 26 138-163 43-68 (386)
487 3qks_A DNA double-strand break 73.8 1.7 5.8E-05 44.3 3.1 23 142-164 25-47 (203)
488 3ez2_A Plasmid partition prote 73.8 4.2 0.00014 45.7 6.7 65 209-275 243-319 (398)
489 3b60_A Lipid A export ATP-bind 73.4 1.4 5E-05 52.4 2.8 21 142-162 371-391 (582)
490 2crv_A IF-2MT, translation ini 73.4 7.6 0.00026 36.2 7.0 54 506-569 29-82 (120)
491 3crm_A TRNA delta(2)-isopenten 73.3 1.9 6.6E-05 47.4 3.6 25 141-165 6-30 (323)
492 2dpy_A FLII, flagellum-specifi 73.1 1.8 6.1E-05 49.8 3.4 36 128-164 146-181 (438)
493 3d3q_A TRNA delta(2)-isopenten 73.0 2.1 7.2E-05 47.4 3.8 25 141-165 8-32 (340)
494 3b5x_A Lipid A export ATP-bind 73.0 1.6 5.4E-05 52.1 3.0 21 142-162 371-391 (582)
495 4eaq_A DTMP kinase, thymidylat 73.0 2.3 8E-05 44.2 4.0 24 140-163 26-49 (229)
496 1qvr_A CLPB protein; coiled co 73.0 13 0.00043 46.4 11.3 24 140-163 588-611 (854)
497 1nlf_A Regulatory protein REPA 72.8 1.9 6.6E-05 46.0 3.4 22 141-162 31-52 (279)
498 1yqt_A RNAse L inhibitor; ATP- 72.6 1.7 5.8E-05 51.3 3.1 21 142-162 49-69 (538)
499 1ltq_A Polynucleotide kinase; 72.5 1.8 6.1E-05 46.5 3.0 22 141-162 3-24 (301)
500 2yl4_A ATP-binding cassette SU 72.2 1.5 5E-05 52.5 2.5 20 142-161 372-391 (595)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=3.9e-156 Score=1456.93 Aligned_cols=825 Identities=39% Similarity=0.715 Sum_probs=745.6
Q ss_pred ccccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEE
Q 001965 123 TYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202 (989)
Q Consensus 123 ~~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~ 202 (989)
.+|+.+++.++|..++++|||+|+||+|||||||+++|++.++.+.+.+ .+.++++|+.+.|++||+|++++.+++.
T Consensus 2 ~~~~~~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~---~~~~~~~D~~~~E~~rgiTI~~~~~~~~ 78 (842)
T 1n0u_A 2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK---AGEARFTDTRKDEQERGITIKSTAISLY 78 (842)
T ss_dssp -CBCHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------CCCBCCCEEEEE
T ss_pred cccCHHHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc---CCCceeecCchhhhhcceeEeeceeEEE
Confidence 4789999999999899999999999999999999999999988876433 4567899999999999999999998888
Q ss_pred eec-----------CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEE
Q 001965 203 LED-----------SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVN 271 (989)
Q Consensus 203 ~~~-----------~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviN 271 (989)
|.. .+++++.+||||||||.+|..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+|
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviN 158 (842)
T 1n0u_A 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVIN 158 (842)
T ss_dssp EECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEE
Confidence 851 345689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccc
Q 001965 272 KVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFD 351 (989)
Q Consensus 272 KiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~ 351 (989)
|+|+...+++++|.+++.+++++++++|..+..+.........+.|..++|.|+|+++||+||+.+|+++|...-+ ++
T Consensus 159 K~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~--~~ 236 (842)
T 1n0u_A 159 KVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFG--VD 236 (842)
T ss_dssp CHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTT--SC
T ss_pred CCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcC--CC
Confidence 9999999999999999999999999999999765321112244678899999999999999999999999977334 78
Q ss_pred hhhhhhhhcccccccCCCCeEEeCCCCCC---cchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcc
Q 001965 352 AEKFASRLWGDMYFHPDTRVFKKKPPASG---GERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNV 428 (989)
Q Consensus 352 ~~~~~~~lwgd~y~~~~~~~~~~~~~~~~---~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~ 428 (989)
...+.+++|||+||+++++++...+.+.. .+++|++++++|+|+++++++..+++.|++||+++|+.++.++++.+.
T Consensus 237 ~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~ 316 (842)
T 1n0u_A 237 KAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEG 316 (842)
T ss_dssp HHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCH
T ss_pred HHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhh
Confidence 89999999999999998888887654432 368999999999999999999888888999999999999999998888
Q ss_pred hHHHHhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeE
Q 001965 429 RPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDA 508 (989)
Q Consensus 429 ~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a 508 (989)
+.+++.++..|+|.++.|||+|++++|||.+++..++..+|.|+.+++....++.||+++||+|+|||++++++.|++++
T Consensus 317 ~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~ 396 (842)
T 1n0u_A 317 KALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYA 396 (842)
T ss_dssp HHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEE
T ss_pred HHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEE
Confidence 88889889999999999999999999999999999998899988766666678899999999999999999999877899
Q ss_pred EEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCC
Q 001965 509 FGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDE 588 (989)
Q Consensus 509 ~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~ 588 (989)
|+|||||+|++||+|++++++|+.+..+++..++|++|++++|+++++|++|+|||||+|.|++++.++++|||+ ..
T Consensus 397 ~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~---~~ 473 (842)
T 1n0u_A 397 FGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTT---SE 473 (842)
T ss_dssp EEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEES---CT
T ss_pred EEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecC---CC
Confidence 999999999999999999999988776667789999999999999999999999999999999999888889997 34
Q ss_pred ccccccccccCCcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccc
Q 001965 589 DVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVE 668 (989)
Q Consensus 589 ~~~~~~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~ie 668 (989)
.+.+|.++.|+..|++++||||++++|++||.+||++|+++||++++..+||||++|+||||||||||++||+++|++++
T Consensus 474 ~~~~l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~~ve 553 (842)
T 1n0u_A 474 TAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVP 553 (842)
T ss_dssp TCCCBCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTSCSC
T ss_pred CccccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhcCCc
Confidence 56788999876679999999999999999999999999999999999988999999999999999999999999994499
Q ss_pred eEEcccEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccce
Q 001965 669 VKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSI 748 (989)
Q Consensus 669 i~vs~P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~i 748 (989)
|++++|+|+|||||++++...|++++++||+++++++|||++++...++.|.+.+.++.+.++++|+++|+||.+++++|
T Consensus 554 v~~~~P~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~i 633 (842)
T 1n0u_A 554 LKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKI 633 (842)
T ss_dssp EEEECCCCCCEEEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTE
T ss_pred eEecCcEEEEEEeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhce
Confidence 99999999999999999988899999999999999999999999999999999988889999999999999999999999
Q ss_pred EEeCCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHH
Q 001965 749 WAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTA 828 (989)
Q Consensus 749 w~fgP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~ 828 (989)
|+|||+..|+|+|+|.+.+.. ++++++++|++|||||+++||||||||+||+|+|+|+++|.+..++++||+++|+
T Consensus 634 w~~~p~~~~~~~f~~~~~g~~----~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~ 709 (842)
T 1n0u_A 634 WCFGPDGNGPNLVIDQTKAVQ----YLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTM 709 (842)
T ss_dssp EEESSTTTSSEEEEECCCCCT----THHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHH
T ss_pred eeeccCCCCCcEEEecCCCcc----ccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHH
Confidence 999999889999999998765 4556677889999999999999999999999999999999888899999999999
Q ss_pred HHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCC
Q 001965 829 RRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQ 908 (989)
Q Consensus 829 r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~ 908 (989)
|+||++||++|+|+||||||.|+|+||++++|+||++|++|||+|+++++.+|+++++|+|++|++|||||+++|||+||
T Consensus 710 ~~a~~~a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~ 789 (842)
T 1n0u_A 710 RRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATG 789 (842)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred ccEEEeeeccceeecCCCCcccccccCCCCCCChhhHHHHHHHHHHhccCCCCCC-CccccCCH
Q 001965 909 GQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDV-SINKFFDE 971 (989)
Q Consensus 909 G~a~~~~~F~hw~~vp~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R~RKGl~~~~-~~~~~~d~ 971 (989)
|+|+|+|.|+||++||+||++++ |+||+||.+|||||||++++ ++++|+|+
T Consensus 790 G~g~~~~~F~~y~~vp~~~~~~~------------~~a~~~~~~~R~rKGl~~~~p~~~~~~d~ 841 (842)
T 1n0u_A 790 GQAFPQMVFDHWSTLGSDPLDPT------------SKAGEIVLAARKRHGMKEEVPGWQEYYDK 841 (842)
T ss_dssp TCCEEEEEEEEEEECCSCTTCTT------------SHHHHHHHHHHHHTTCCSSCCCGGGGCCC
T ss_pred CCceEEEEeccceeCCCCccchh------------hHHHHHHHHHHHhCCCCCCCCCHHHhccC
Confidence 99999999999999999999754 99999999999999999999 79999993
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.3e-126 Score=1174.97 Aligned_cols=683 Identities=24% Similarity=0.327 Sum_probs=544.8
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCC--CCceEEEE
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSN--SKSYLCNI 215 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~--~~~~~inl 215 (989)
++||||||+||+|||||||+++|++.+|.+.+.|++..+ .+++|++++||+|||||+++.+++.|...+ +++|+|||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~-~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG-AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC-CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 789999999999999999999999999999888877665 889999999999999999999999997643 34899999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
||||||+||..||.+|||++||||+||||++|+++||+.+|++|.++++|+|+|||||||.+++ +..++
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~-----------~~~~~ 158 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGAN-----------FLRVV 158 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCC-----------HHHHH
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCcc-----------HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876 56789
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
++++..++.. ..+...|+.. . ..|.|. +|+..+..++|++. ..+.++...
T Consensus 159 ~ei~~~l~~~-----~~~~~~pi~~----~-----------------~~~~g~-vd~~~~~~~~~~~~---~~g~~~~~~ 208 (709)
T 4fn5_A 159 EQIKKRLGHT-----PVPVQLAIGA----E-----------------ENFVGQ-VDLIKMKAIYWNDD---DKGMTYREE 208 (709)
T ss_dssp HHHHHHHCSC-----EEESEEEESS----S-----------------TTCCEE-EETTTTEEEEEEC-----CCCEEEEC
T ss_pred HHhhhhcccc-----eeeeecccCc----h-----------------hccceE-EEEeeeeEEEeecc---cCCceeccc
Confidence 9999988752 2233444321 1 124454 78888888888653 234456655
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHH--HhhhcccccCh------HHHH
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLL--RLACSSVFGSA------SGFT 447 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll--~~v~~~~~g~~------~~ll 447 (989)
..+.. +.+...+-...+++.+...+++.+++|+++ ..++.+++...++... ..++|++++++ +.||
T Consensus 209 ~~~~~----~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lL 282 (709)
T 4fn5_A 209 EIPAE----LKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVL 282 (709)
T ss_dssp CCCHH----HHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHH
T ss_pred cccHH----HHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHH
Confidence 55433 333333323333444333344455778885 6789999888776654 37788888874 6799
Q ss_pred HHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEcc
Q 001965 448 DMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLG 527 (989)
Q Consensus 448 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg 527 (989)
|+|++++|||.+++..+. ++.+++....+++||+++||+++|||+.++++. ++++|+|||||+|++||+|++.+
T Consensus 283 d~i~~~lPsP~~~~~~~~-----~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~-G~la~~RV~sGtl~~G~~v~~~~ 356 (709)
T 4fn5_A 283 DAVIDYLPAPTEIPAIKG-----VSPDDETVEDERHADDNEPFSSLAFKIATDPFV-GTLTFARVYSGVLSSGDSVLNSV 356 (709)
T ss_dssp HHHHHHSCCTTSSCCEEC-----BCCC-CCSCCEECSCTTSCCEEEEEECCCBTTT-BCCCEEEEEESCEETTCBCBCTT
T ss_pred HHHHhhCCCCcccccccc-----cCCccccccccccCCccCcceEEEEEeecccCC-CceEEEeccCCCCCCCCEEEEec
Confidence 999999999987655442 334555567889999999999999999999986 56999999999999999999765
Q ss_pred CCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEE
Q 001965 528 EGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTA 607 (989)
Q Consensus 528 ~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~va 607 (989)
++ +.++|+++|+++|+++++|++|+|||||+|.|+++..+ |+||++ .+....+.++.+ ++|++++|
T Consensus 357 ~~---------~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~-gdTl~~---~~~~~~~~~~~~-~~Pvv~va 422 (709)
T 4fn5_A 357 KG---------KKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTT-GDTLCS---IEKPIILERMDF-PEPVISVA 422 (709)
T ss_dssp TC---------CCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCT-TCEEEC---SSSCCBCC-----CCCSEEEE
T ss_pred CC---------cEEeecceeEeecceeeEeeeecCCCeeeecCCCcCcc-CCEecC---CCccccCCCCCC-CCcceEEE
Confidence 54 34689999999999999999999999999999998665 899998 344667788886 79999999
Q ss_pred eeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccc
Q 001965 608 TEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686 (989)
Q Consensus 608 IeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s 686 (989)
|||.+++|++||.+||+||+++||+++++. +|||||+|+|+||||||||++|||++|+ ++|++|+|+|+|||||++.+
T Consensus 423 vep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~g-vev~vs~P~V~yrETi~~~~ 501 (709)
T 4fn5_A 423 VEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFG-VEANIGKPQVAYRETITKDN 501 (709)
T ss_dssp ECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTC-CCBCCBCCCCCCEEECCCCS
T ss_pred EecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhC-ceEEEeeceEEEEEEEecCC
Confidence 999999999999999999999999999875 8999999999999999999999999997 99999999999999998654
Q ss_pred cceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCC
Q 001965 687 SMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTL 766 (989)
Q Consensus 687 ~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~ 766 (989)
.. .+..++ ++.+...+-.+.|+.+.++++|.+||... .++|.|++.
T Consensus 502 ~~---~~~~~~------------------------------k~~~~~~~~~~~~~~~~~~~~~e~g~~~~-~~~f~~~~~ 547 (709)
T 4fn5_A 502 VE---IEGKFV------------------------------RQSGGRGQFGHCWIRFSAADVDEKGNITE-GLVFENEVV 547 (709)
T ss_dssp EE---EEEEEE------------------------------EEETTEEEEEEEEEEEECCCBC-CCCBCC-EEEEEECC-
T ss_pred ce---ecceee------------------------------eccCCcCcceeEEEEEeeccccccCCCcC-ceEEecccc
Confidence 31 111111 01111122245688888888999998643 478999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeee
Q 001965 767 PTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEP 846 (989)
Q Consensus 767 ~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEP 846 (989)
++.+|++++++ |.+||+||+++||||||||+||+|+|+|+++++...++++.|+ ++++||++|+++|+|+||||
T Consensus 548 ~~~~p~~~~~~----v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~--a~~~a~~~a~~~a~p~LlEP 621 (709)
T 4fn5_A 548 GGVVPKEYIPA----IQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKI--AASMATKQLAQKGGGKVLEP 621 (709)
T ss_dssp CCSSCGGGHHH----HHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHH--HHHHHHHTHHHHSCCEEEEE
T ss_pred cccCCHHHHHH----HHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHH--HHHHHHHHHHHHCCCEEECc
Confidence 99999999875 5599999999999999999999999999999988888777666 58999999999999999999
Q ss_pred eEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecCCC
Q 001965 847 VYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGD 926 (989)
Q Consensus 847 i~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp~d 926 (989)
||.|+|+||++++|+||++|++|||+|+++++..| ..+|+|++|++|||||+++||++|||+|+|+|.|+||++||+|
T Consensus 622 i~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~ 699 (709)
T 4fn5_A 622 IMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVS--GKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSN 699 (709)
T ss_dssp EEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSS--EEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHH
T ss_pred eEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCC--CEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcC
Confidence 99999999999999999999999999999888766 4689999999999999999999999999999999999999998
Q ss_pred Ccccc
Q 001965 927 PLDKS 931 (989)
Q Consensus 927 p~~~~ 931 (989)
++++.
T Consensus 700 ~~~~~ 704 (709)
T 4fn5_A 700 IVEAL 704 (709)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=5.1e-114 Score=1058.79 Aligned_cols=677 Identities=23% Similarity=0.321 Sum_probs=576.8
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec--CCCCceEE
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED--SNSKSYLC 213 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~~~~~~i 213 (989)
.++++|||+|+||+|||||||+++|++.++.+.+.|....+ .+++|+.+.|++||+|+++...++.|.+ .+++.+.+
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 46789999999999999999999999998888766655444 7899999999999999999999988854 34456999
Q ss_pred EEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHH
Q 001965 214 NIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRH 293 (989)
Q Consensus 214 nlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ 293 (989)
||||||||.+|..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+||+|+...+ +.+
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~-----------~~~ 153 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGAN-----------FLK 153 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccccc-----------HHH
Confidence 999999999999999999999999999999999999999999999999999999999999998643 466
Q ss_pred HHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEE
Q 001965 294 TIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFK 373 (989)
Q Consensus 294 ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~ 373 (989)
++++++..++. ...+.+.|+... .+|.|+ +|+..+.+++|.+. ..++++.
T Consensus 154 ~~~~l~~~l~~-----~~~~~~~Pi~~~---------------------~~f~g~-~dl~~~~~~~~~~~---~~g~~~~ 203 (704)
T 2rdo_7 154 VVNQIKTRLGA-----NPVPLQLAIGAE---------------------EHFTGV-VDLVKMKAINWNDA---DQGVTFE 203 (704)
T ss_pred HHHHHHHHhCC-----CceeEEcccccc---------------------ccccce-eehhhhhhhcccCc---cCCcceE
Confidence 88999998875 235667786321 225666 89999888888321 1244565
Q ss_pred eCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HH
Q 001965 374 KKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SG 445 (989)
Q Consensus 374 ~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~ 445 (989)
..+.+. .+.++++++++++++.+...+++.|++||+ ++.++.++++..++.++. .++|+|+|++ +.
T Consensus 204 ~~~~~~----~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~--~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~ 277 (704)
T 2rdo_7 204 YEDIPA----DMVELANEWHQNLIESAAEASEELMEKYLG--GEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQA 277 (704)
T ss_pred EecCCH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHhc--CCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHH
Confidence 555543 478899999999998766666666788998 689999999999888865 6777877774 78
Q ss_pred HHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEE
Q 001965 446 FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRV 525 (989)
Q Consensus 446 lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~v 525 (989)
|||+|++++|||.+++..+. +. +.. +....++.||+++||+++|||++++++.| .++|+|||||+|++||+|++
T Consensus 278 LLd~i~~~lPsP~~~~~~~~---~~-~~~-~~~~~~~~~~~~~p~~~~VfK~~~d~~~G-~~~~~RV~sG~l~~g~~v~~ 351 (704)
T 2rdo_7 278 MLDAVIDYLPSPVDVPAING---IL-DDG-KDTPAERHASDDEPFSALAFKIATDPFVG-NLTFFRVYSGVVNSGDTVLN 351 (704)
T ss_pred HHHHHHHHCCChhhcccccc---cC-Ccc-cccccccccCCCCceEEEEEEEEEcCCCc-eEEEEEEEeeeecCCCEEEe
Confidence 99999999999998765543 21 111 11235788999999999999999999875 48999999999999999998
Q ss_pred ccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEE
Q 001965 526 LGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVK 605 (989)
Q Consensus 526 lg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~ 605 (989)
...+ +.++|++|++++|++++++++|+|||||+|.|++++.+ |+||++ ...+..|+++.+ +.|+++
T Consensus 352 ~~~~---------~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~-GdTl~~---~~~~~~l~~~~~-~~Pv~~ 417 (704)
T 2rdo_7 352 SVKA---------ARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTT-GDTLCD---PDAPIILERMEF-PEPVIS 417 (704)
T ss_pred CCCC---------cEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCcc-CCEEeC---CCcccccCCCCC-CCceEE
Confidence 6543 46899999999999999999999999999999998755 899997 344678899986 789999
Q ss_pred EEeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeec
Q 001965 606 TATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVE 684 (989)
Q Consensus 606 vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~ 684 (989)
+||+|.+++|++||.+||++|+++||++++.. +||||++|+||||||||||++||+++|+ +++++++|+|+|||||++
T Consensus 418 ~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~-v~v~~~~p~V~yrEti~~ 496 (704)
T 2rdo_7 418 IAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN-VEANVGKPQVAYRETIRQ 496 (704)
T ss_pred EEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhC-ceEEEeCCEEEEEEeecc
Confidence 99999999999999999999999999999987 8899999999999999999999999996 999999999999999987
Q ss_pred cc-cceeee--ec--CCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCc
Q 001965 685 SS-SMKCFA--ET--PNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPN 759 (989)
Q Consensus 685 ~s-~~~~~a--~t--~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~n 759 (989)
++ ...... ++ .++.+++++++||++. ||+. ..|
T Consensus 497 ~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~-----------------------------------------~~~g-~g~ 534 (704)
T 2rdo_7 497 KVTDVEGKHAKQSGGRGQYGHVVIDMYPLEP-----------------------------------------GSNP-KGY 534 (704)
T ss_pred ccccceeeeccccCCCCeeEEEEEEEEECCC-----------------------------------------CCCC-CCc
Confidence 76 432211 11 3344799999999832 0110 136
Q ss_pred eEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhc
Q 001965 760 ILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMA 839 (989)
Q Consensus 760 il~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A 839 (989)
.|.|.+.++.+|++|++ +|.+||+||+++||||||||+||+|+|+|+++|... ...+++.+|+|+||++||++|
T Consensus 535 ~f~~~~~g~~~p~~~~~----~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~d--s~~~~f~~a~~~a~~~a~~~a 608 (704)
T 2rdo_7 535 EFINDIKGGVIPGEYIP----AVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVD--SSELAFKLAASIAFKEGFKKA 608 (704)
T ss_pred EEEEeccCCcCcHHHHH----HHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCC--CcHHHHHHHHHHHHHHHHHhc
Confidence 88889999989987765 667999999999999999999999999999987532 234578889999999999999
Q ss_pred CCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccc
Q 001965 840 TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDH 919 (989)
Q Consensus 840 ~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~h 919 (989)
+|+||||||.|+|+||++++|+||++|++|||+|+++++.+| .++|+|++|++|||||+++|||+|||+|+|+|.|+|
T Consensus 609 ~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~ 686 (704)
T 2rdo_7 609 KPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLK 686 (704)
T ss_pred CCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCC--eEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCc
Confidence 999999999999999999999999999999999999998765 699999999999999999999999999999999999
Q ss_pred eeecCCCCcccc
Q 001965 920 WAIVPGDPLDKS 931 (989)
Q Consensus 920 w~~vp~dp~~~~ 931 (989)
|++||++++++.
T Consensus 687 y~~~~~~~~~~i 698 (704)
T 2rdo_7 687 YDEAPSNVAQAV 698 (704)
T ss_pred ceECCccHHHHH
Confidence 999999877654
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-111 Score=1036.49 Aligned_cols=666 Identities=24% Similarity=0.347 Sum_probs=540.1
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
++++|||+|+||+|||||||+++|+..++.+.+.|....+ .+++|+.+.|++||+|+.+....+.+ +++.++||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~-~~~~D~~~~e~~~giTi~~~~~~~~~-----~~~~i~li 80 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG-ASQMDWMEQEQDRGITITSAATTAAW-----EGHRVNII 80 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEE-----TTEEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC-ceecccchhhhhcCceEeeeeEEEEE-----CCeeEEEE
Confidence 5789999999999999999999999988877655544443 67899999999999999999888887 67899999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++.++++.+|++|+|||+++|++.++..+|+++...++|+++|+||+|+...+ +.++++
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~-----------~~~~~~ 149 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN-----------FEYSVS 149 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-----------HHHHHH
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc-----------hHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998643 456888
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhccccccc-CCCCeEEeC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFH-PDTRVFKKK 375 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~-~~~~~~~~~ 375 (989)
+++..++.. ..+.+.|+. + |- .+.++ +|+... +.| ||+ ..+.++...
T Consensus 150 ~l~~~l~~~-----~~~~~ipis-------a--~~------------~~~~l-~d~l~~--~~~---~~~~~~~~~~~~~ 197 (693)
T 2xex_A 150 TLHDRLQAN-----AAPIQLPIG-------A--ED------------EFEAI-IDLVEM--KCF---KYTNDLGTEIEEI 197 (693)
T ss_dssp HHHHHHCCC-----EEESEEEEC-------C--GG------------GCCEE-EETTTT--EEE---ECCSSSSCSCEEE
T ss_pred HHHHHhCCC-----ceeEEeecc-------c--CC------------Cccee-eeeecc--eeE---EeccCCCceeEEe
Confidence 888888642 123344542 2 11 12333 555333 333 454 323345444
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHH
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFT 447 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~ll 447 (989)
..+. .|.+++.+...+++..+..++++.+++||+ |..++.++++..+++.+. .++|+|++++ +.||
T Consensus 198 ~~~~----~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~--~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LL 271 (693)
T 2xex_A 198 EIPE----DHLDRAEEARASLIEAVAETSDELMEKYLG--DEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLML 271 (693)
T ss_dssp CCCG----GGHHHHHHHHHHHHHHHHTTCHHHHHHHHT--TCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHH
T ss_pred cCCH----HHHHHHHHHHHHHHHHHhhCCHHHHHHHhc--CCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHH
Confidence 4443 377778888888888766666666788998 688999999999988875 6788888874 7899
Q ss_pred HHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEcc
Q 001965 448 DMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLG 527 (989)
Q Consensus 448 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg 527 (989)
|+|++++|||.+++..+. + ++.++ ....++.||+++||+++|||++++++.| .++|+|||||+|++||+|++..
T Consensus 272 d~i~~~lPsP~~~~~~~~---~-~~~~~-~~~~~~~~~~~~p~~a~VfK~~~d~~~g-~~~~~RV~sG~l~~g~~v~~~~ 345 (693)
T 2xex_A 272 DAVIDYLPSPLDVKPIIG---H-RASNP-EEEVIAKADDSAEFAALAFKVMTDPYVG-KLTFFRVYSGTMTSGSYVKNST 345 (693)
T ss_dssp HHHHHHSCCGGGSCCEEE---E-ETTEE-EEEEEECSCTTSCCEEEEEEEEEETTTE-EEEEEEEEESEEETTEEEEETT
T ss_pred HHHHHHCCCchhcccccc---c-CCCcc-ccceeecCCCCCceEEEEEEeeecCCCc-eEEEEEEEeeeEecCCEEEecC
Confidence 999999999998665443 2 22221 1346789999999999999999999874 5999999999999999999865
Q ss_pred CCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEE
Q 001965 528 EGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTA 607 (989)
Q Consensus 528 ~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~va 607 (989)
.+ +.++|++|++++|++++++++|+|||||+|.|++++.+ |+||++ ...+..|+++.+ +.|++++|
T Consensus 346 ~~---------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~-GdTl~~---~~~~~~~~~~~~-~~Pv~~~a 411 (693)
T 2xex_A 346 KG---------KRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT-GDTLCG---EKNDIILESMEF-PEPVIHLS 411 (693)
T ss_dssp TT---------EEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCT-TCEEEE---TTCCEECCCCSS-CSCSEEEE
T ss_pred CC---------ceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCcc-CCEEec---CCCccccCCcCC-CCceEEEE
Confidence 43 67899999999999999999999999999999998876 899998 345678999996 68999999
Q ss_pred eeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccc
Q 001965 608 TEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686 (989)
Q Consensus 608 IeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s 686 (989)
|+|++++|++||.+||++|+++||++++.. +||||++|+||||||||||++|||++|+ ++|++++|.|+|||||.+++
T Consensus 412 v~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~-v~v~~~~p~V~yrEti~~~~ 490 (693)
T 2xex_A 412 VEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRETFKSSA 490 (693)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSC-CCEEECCCEECCEEEESSCE
T ss_pred EEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhC-ceEEEeCCeEEEEEEecccc
Confidence 999999999999999999999999999987 8899999999999999999999999997 99999999999999999876
Q ss_pred cceee--eec--CCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEe
Q 001965 687 SMKCF--AET--PNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILL 762 (989)
Q Consensus 687 ~~~~~--a~t--~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~ 762 (989)
..... .++ ..+.+++++++|||+++. .|.|.
T Consensus 491 ~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~---------------------------------------------g~~f~ 525 (693)
T 2xex_A 491 QVQGKFSRQSGGRGQYGDVHIEFTPNETGA---------------------------------------------GFEFE 525 (693)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEEEECCTTC---------------------------------------------CCEEE
T ss_pred ceeEeeccccCCCCceEEEEEEEEECCCCC---------------------------------------------CCEEE
Confidence 53221 111 122379999999998642 26788
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCe
Q 001965 763 DDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPR 842 (989)
Q Consensus 763 d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~pr 842 (989)
|.+.++.+|++|++ +|++||+||+++||||||||+||+|+|+|+++|+... ..+++.+|+|+||++||++|+|+
T Consensus 526 ~~~~g~~~p~~~~~----~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds--~~~~f~~a~~~a~~~a~~~a~p~ 599 (693)
T 2xex_A 526 NAIVGGVVPREYIP----SVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDS--SEMAFKIAASLALKEAAKKCDPV 599 (693)
T ss_dssp ECCCTTSSCGGGHH----HHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTC--CHHHHHHHHHHHHHHHHTTSCEE
T ss_pred ecCCCCcCCHHHHH----HHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCC--CHHHHHHHHHHHHHHHHHhcCCE
Confidence 88999999998775 5669999999999999999999999999999875322 23468889999999999999999
Q ss_pred eeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceee
Q 001965 843 LMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAI 922 (989)
Q Consensus 843 LlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~ 922 (989)
||||||.|+|+||++++|+||++|++|||+|+++++.+| .++|+|++|++|||||+++|||+|||+|+|+|.|+||++
T Consensus 600 llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 677 (693)
T 2xex_A 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGN--AQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAE 677 (693)
T ss_dssp EEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEE
T ss_pred EEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCC--eEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceE
Confidence 999999999999999999999999999999999998765 699999999999999999999999999999999999999
Q ss_pred cCCCCcccc
Q 001965 923 VPGDPLDKS 931 (989)
Q Consensus 923 vp~dp~~~~ 931 (989)
||++++++.
T Consensus 678 ~~~~~~~~i 686 (693)
T 2xex_A 678 VPKSIAEDI 686 (693)
T ss_dssp CCHHHHHHH
T ss_pred CChhHHHHH
Confidence 998766543
No 5
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=7.2e-116 Score=1066.10 Aligned_cols=626 Identities=21% Similarity=0.307 Sum_probs=524.0
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+||||||+||+|||||||+++|++.+|.+.+.|++..+ .+++|++++|++|||||+++.+++.| +++.||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g-~~~~D~~~~EreRGITI~s~~~~~~~-----~~~~iNlIDT 74 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG-TTRTDNTLLERQRGITIQTGITSFQW-----ENTKVNIIDT 74 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS-CCSTTCSTTHHHHSSCSSCCCCCCBC-----SSCBCCCEEC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccC-CcccCCcHHHHhCCCcEEeeeEEEEE-----CCEEEEEEEC
Confidence 69999999999999999999999999999988887765 78999999999999999999999988 7899999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHH
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVI 298 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~i 298 (989)
|||+||..|+.++++++|+||+||||++|+++||+.+|++|.++++|+|+|||||||.+.+ +..+++++
T Consensus 75 PGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~-----------~~~~~~~i 143 (638)
T 3j25_A 75 PGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID-----------LSTVYQDI 143 (638)
T ss_dssp CCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC-----------SHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC-----------HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877 35688888
Q ss_pred HHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCC
Q 001965 299 NNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPA 378 (989)
Q Consensus 299 n~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~ 378 (989)
++.++... ++... ++ +|.+..... +
T Consensus 144 ~~~l~~~~----------------~~~~~----------------------~~-------~~~~~~~~~----~------ 168 (638)
T 3j25_A 144 KEKLSAEI----------------VIKQK----------------------VE-------LYPNVCVTN----F------ 168 (638)
T ss_dssp HHTTCCCC----------------CCCCC----------------------CC-------SCGGGCCCC----C------
T ss_pred HHHhCCCc----------------cccce----------------------eE-------eeccccccc----c------
Confidence 88776411 00000 00 111100000 0
Q ss_pred CCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHHHH
Q 001965 379 SGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTDML 450 (989)
Q Consensus 379 ~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld~i 450 (989)
. .. +.++.++..+++.+++|++. ..++..++....+..+. .++|.|+|++ +.|||+|
T Consensus 169 ~--~~-----------~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i 233 (638)
T 3j25_A 169 T--ES-----------EQWDTVIEGNDDLLEKYMSG--KSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVI 233 (638)
T ss_dssp C--CH-----------HHHHHHHHHHCHHHHHHHHH--CCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHH
T ss_pred c--hh-----------hhhhhhhcccHHHHhhhccC--CccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhh
Confidence 0 00 11222222344556778874 67788887766665543 6789999885 7899999
Q ss_pred HHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCC
Q 001965 451 VKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGY 530 (989)
Q Consensus 451 ~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~ 530 (989)
++++|+|.+ ++++||+++|||+.++++.| +++|+|||||+|++||.|++.+.+
T Consensus 234 ~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G-~la~~RV~sG~l~~g~~v~~~~~~- 286 (638)
T 3j25_A 234 TNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQ-RLAYIRLYSGVLHLRDSVRVSEKE- 286 (638)
T ss_dssp HHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTC-CCCBCCBSSBCCCSCCCSSSCCCC-
T ss_pred hccccCccc-------------------------chhhhhcceeeeeeeeccCc-eEEEEEEEcCcccCCCccccccCc-
Confidence 999999964 34679999999999999875 599999999999999999875432
Q ss_pred CCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcceEEEEeee
Q 001965 531 SPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEP 610 (989)
Q Consensus 531 ~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP 610 (989)
..+|.+++.++|+++.++++|+|||||+|.|.. ...++|+++ ......+.++. .++|++++||+|
T Consensus 287 ---------~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~--~~~~~tl~d---~~~~~~~~~i~-~p~Pv~~~aiep 351 (638)
T 3j25_A 287 ---------KIKVTEMYTSINGELCKIDRAYSGEIVILQNEF--LKLNSVLGD---TKLLPQRKKIE-NPHPLLQTTVEP 351 (638)
T ss_dssp ---------CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCSSS--CSSEECSSS---SSSGGGCSCCC-CCCCCCCCEEEC
T ss_pred ---------ceeEEeeecccccccccccccccceEEEEeccc--cccCceecC---CCCcccccCcc-CCCccceeeecc
Confidence 357999999999999999999999999998832 222566665 23344556666 589999999999
Q ss_pred CCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccce
Q 001965 611 LNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMK 689 (989)
Q Consensus 611 ~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~~ 689 (989)
.+++|++||.+||++|+++||+++++. ++|||++|+|||||||||+++|||++|+ ++|++|+|+|+|||||++++...
T Consensus 352 ~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efg-vev~~~~P~V~yrEti~~~~~~~ 430 (638)
T 3j25_A 352 SKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYH-VEIELKEPTVIYMERPLKNAEYT 430 (638)
T ss_dssp CSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTC-CCCEEECCCCCCCBCCCSCCEEC
T ss_pred CChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhC-CcEEEeCCceeEEEEecccceEE
Confidence 999999999999999999999999876 7899999999999999999999999996 99999999999999999887665
Q ss_pred eeeecCC--CceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCC
Q 001965 690 CFAETPN--KKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLP 767 (989)
Q Consensus 690 ~~a~t~n--k~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~ 767 (989)
+..++.. ..+++++++||++++.+.. |.+.+.+
T Consensus 431 ~~~~~~~~~~~~~v~~~~eP~~~~~g~~---------------------------------------------f~~~~~~ 465 (638)
T 3j25_A 431 IHIEVPPNPFWASIGLSVSPLPLGSGMQ---------------------------------------------YESSVSL 465 (638)
T ss_dssp CCCCSSSCCCCCCCCEECCCCCSSCCCC---------------------------------------------CCCCCCS
T ss_pred EEEecCCCCceEEEEEEEecccCCCCcE---------------------------------------------EEeeeec
Confidence 5444333 3478888999988764322 2333455
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeee
Q 001965 768 TEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPV 847 (989)
Q Consensus 768 ~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi 847 (989)
+.+|++|++ +|.+||+||+++| |||+||+||+|+|.|++++.. +...+++.+|+++||++||++|+|+|||||
T Consensus 466 ~~~~~~~~~----av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~--~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi 538 (638)
T 3j25_A 466 GYLNQSFQN----AVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSP--VSTPADFRMLAPIVLEQVLKKAGTELLEPY 538 (638)
T ss_dssp SSTTHHHHH----HHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSC--SCCSHHHHHHHHHHHHHHHHHHCCBCCCCC
T ss_pred ccchhhhhh----HHhhhHHHHHhcc-ccCCcccceEEEEEECcccCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEcCc
Confidence 667888876 5569999999999 999999999999999998643 445678889999999999999999999999
Q ss_pred EEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeecCCCC
Q 001965 848 YYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDP 927 (989)
Q Consensus 848 ~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~vp~dp 927 (989)
|.|+|+||++++|+||++|++|||+|+++++.+| .++|+|++|++|||||+++|||+|||+|+|+|.|+||++||+||
T Consensus 539 ~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp 616 (638)
T 3j25_A 539 LSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNN--EVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEP 616 (638)
T ss_dssp TTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTT--EEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCC
T ss_pred EEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCC--eEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCc
Confidence 9999999999999999999999999999887655 68999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCChhhHHHHHHHHH
Q 001965 928 LDKSIVLRPLEPAPIQHLAREFMVKT 953 (989)
Q Consensus 928 ~~~~i~~~~l~~~~~~~~ar~~~~~~ 953 (989)
++ +|+++.+..+.+|-++.|+
T Consensus 617 ~~-----~~~~~~~~~d~~~~~~~k~ 637 (638)
T 3j25_A 617 VC-----QPRRPNSRIDKVRYMFNKI 637 (638)
T ss_dssp SC-----CCCCCCCCHHHHHHHHHHH
T ss_pred cc-----cccCCCChhhHHHHHHhcc
Confidence 87 5788888889999776664
No 6
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=6.6e-111 Score=1030.15 Aligned_cols=667 Identities=24% Similarity=0.370 Sum_probs=499.9
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
..++++|||+|+||+|||||||+++|++.++.+.+.|.... +.+++|+.+.|++||+|+.+...++.+ +++.++
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~-~~~~~d~~~~E~~~giTi~~~~~~~~~-----~~~~i~ 80 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHE-GAATMDFMEQERERGITITAAVTTCFW-----KDHRIN 80 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEE-----TTEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecC-CceeccCchhhhhcccccccceEEEEE-----CCeEEE
Confidence 34578999999999999999999999998888766555443 368899999999999999999888887 678999
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHH
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
|||||||.+|..++.++++.+|++|+|||+++|++.+|..+|+++...++|+++|+||+|+...+ +.++
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-----------~~~~ 149 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-----------LWLV 149 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-----------HHHH
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC-----------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998644 4568
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhccccccc-CCCCeEE
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFH-PDTRVFK 373 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~-~~~~~~~ 373 (989)
+++++..++.. ..+.+.|+.. ++...|| +|+... +.| ||+ ..+..+.
T Consensus 150 ~~~l~~~l~~~-----~~~~~~Pi~~----~~~~~g~------------------~d~~~~--~~~---~~~~~~g~~~~ 197 (691)
T 1dar_A 150 IRTMQERLGAR-----PVVMQLPIGR----EDTFSGI------------------IDVLRM--KAY---TYGNDLGTDIR 197 (691)
T ss_dssp HHHHHHTTCCC-----EEECEEEESC----GGGCCEE------------------EETTTT--EEE---EECSTTSCCEE
T ss_pred HHHHHHHhCCC-----ccceeccccC----CCcccch------------------hhhhcc--eee---EeccCCCceeE
Confidence 88888888652 2344556532 3333344 444332 333 444 3344455
Q ss_pred eCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HH
Q 001965 374 KKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SG 445 (989)
Q Consensus 374 ~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~ 445 (989)
..+.+. .|.+++.++..++++.+..++++.+++||+ +..++.++++..+++.+. .++|.|++++ +.
T Consensus 198 ~~~~~~----~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~--~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~ 271 (691)
T 1dar_A 198 EIPIPE----EYLDQAREYHEKLVEVAADFDENIMLKYLE--GEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL 271 (691)
T ss_dssp EECCCG----GGHHHHHHHHHHHHHHHTTTCHHHHHHHHH--TCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHH
T ss_pred EecCCH----HHHHHHHHHHHHHHHHHhhCCHHHHHHHHC--CCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHH
Confidence 555543 378888899999998766665666788998 688999999999888875 6788888885 78
Q ss_pred HHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEE
Q 001965 446 FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRV 525 (989)
Q Consensus 446 lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~v 525 (989)
|||+|++++|||.+++..+.. ++ +. ...+++||+++||+++|||++.+++.| .++|+|||||+|++||+|++
T Consensus 272 LLd~i~~~lPsP~~~~~~~~~----~~-~~--~~~~~~~~~~~p~~~~Vfk~~~d~~~G-~~~~~RV~sG~l~~g~~v~~ 343 (691)
T 1dar_A 272 LLDAVVDYLPSPLDIPPIKGT----TP-EG--EVVEIHPDPNGPLAALAFKIMADPYVG-RLTFIRVYSGTLTSGSYVYN 343 (691)
T ss_dssp HHHHHHHHSCCTTTSCCEEEE----CS-SS--CEEEECCCTTSCCEEEEEEEEEETTTE-EEEEEEEEESEEESSCEEEE
T ss_pred HHHHHHHhCCChhhccccccc----CC-Cc--cccccccCCCCCcEEEEEEEEEcCCCC-cEEEEEEeeeeEecCCEEEe
Confidence 999999999999987655432 22 11 145789999999999999999999864 59999999999999999998
Q ss_pred ccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCcc-ccccccccCCcceE
Q 001965 526 LGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDV-YIFRPLQFNTLPVV 604 (989)
Q Consensus 526 lg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~-~~~~~~~~~~~Pv~ 604 (989)
...+ +.++|++|++++|++++++++|+|||||+|.|++++.+ |+||++. ... ..|+++.+ +.|++
T Consensus 344 ~~~~---------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~-Gdtl~~~---~~~~~~l~~~~~-~~P~~ 409 (691)
T 1dar_A 344 TTKG---------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETIT-GDTLVGE---DAPRVILESIEV-PEPVI 409 (691)
T ss_dssp TTTT---------EEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCT-TCEEEET---TCCCCBCC----------
T ss_pred cCCC---------cEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCcc-CCEEecC---CCcccccCCCCC-CCceE
Confidence 6543 67899999999999999999999999999999998876 8999973 344 68889886 68999
Q ss_pred EEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeee
Q 001965 605 KTATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVV 683 (989)
Q Consensus 605 ~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~ 683 (989)
++||+|.+++|++||.+||++|+++||++++.. +||||++|+||||||||||++||+++|+ ++|++++|+|+|||||.
T Consensus 410 ~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~-v~v~~~~p~V~yrEti~ 488 (691)
T 1dar_A 410 DVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK-VDANVGKPQVAYRETIT 488 (691)
T ss_dssp -----------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEE-EBTTTBCCCBCCEEECS
T ss_pred EEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhC-ceEEEeCCeEEEEEeec
Confidence 999999999999999999999999999999987 8899999999999999999999999997 99999999999999999
Q ss_pred ccccceee--eec--CCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCc
Q 001965 684 ESSSMKCF--AET--PNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPN 759 (989)
Q Consensus 684 ~~s~~~~~--a~t--~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~n 759 (989)
+++..... .++ ..+.+++++++|||+++. .+
T Consensus 489 ~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~---------------------------------------------g~ 523 (691)
T 1dar_A 489 KPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS---------------------------------------------GF 523 (691)
T ss_dssp SCEEEEEEEEECCSSSCEEEEEEEEEEECCTTC---------------------------------------------CE
T ss_pred cceeeeeeeccccCCCCceEEEEEEEEECCCCC---------------------------------------------CC
Confidence 87653221 111 123379999999998642 25
Q ss_pred eEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhc
Q 001965 760 ILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMA 839 (989)
Q Consensus 760 il~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A 839 (989)
.|.|.+.++.+|++|++ +|++||+||+++||||||||+||+|+|+|+++|+... ..+++.+|+|+||++||++|
T Consensus 524 ~f~~~~~g~~~p~~~~~----~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds--~~~~f~~a~~~a~~~a~~~a 597 (691)
T 1dar_A 524 EFVNAIVGGVIPKEYIP----AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDS--SEMAFKIAGSMAIKEAVQKG 597 (691)
T ss_dssp EEEECCCTTSSCTTTHH----HHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTB--CHHHHHHHHHHHHHHHHHTS
T ss_pred EEeecccCCcCcHHHHH----HHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCc--chHHHHHHHHHHHHHHHHHc
Confidence 67888888889988775 5669999999999999999999999999999875322 23468889999999999999
Q ss_pred CCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccc
Q 001965 840 TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDH 919 (989)
Q Consensus 840 ~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~h 919 (989)
+|+||||||.|+|+||++++|+||++|++|||+|+++++.+| .++|+|++|++|+|||+++|||+|||+|+|+|.|+|
T Consensus 598 ~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~ 675 (691)
T 1dar_A 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGN--AQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDH 675 (691)
T ss_dssp CCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETT--EEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEE
T ss_pred CCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCC--eEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCc
Confidence 999999999999999999999999999999999999988765 699999999999999999999999999999999999
Q ss_pred eeecCCCCccccc
Q 001965 920 WAIVPGDPLDKSI 932 (989)
Q Consensus 920 w~~vp~dp~~~~i 932 (989)
|+++|++++++.+
T Consensus 676 y~~~~~~~~~~i~ 688 (691)
T 1dar_A 676 YQEVPKQVQEKLI 688 (691)
T ss_dssp EEECCHHHHHHHH
T ss_pred ceECChhHHHHHH
Confidence 9999998877653
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.6e-102 Score=952.97 Aligned_cols=636 Identities=21% Similarity=0.270 Sum_probs=538.4
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
..+.|||+|+||.|||||||+++|+..++.+...|... .+..++|+.+.|++||+|+.+....+.+ +++.+||+
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~-~g~~~~d~~~~e~~~giti~~~~~~~~~-----~~~~~nli 79 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLF-----RGHRVFLL 79 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEE-----TTEEEEEE
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec-CCcccccCCHHHHhcCCeEEecceEEee-----CCEEEEEE
Confidence 46789999999999999999999998888766555552 3467789999999999999988888877 67899999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++.++++.+|++++|+|+.+|+..+|..+|+++...++|+++|+||+|+. .+ ..++++
T Consensus 80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~-----------~~~~~~ 147 (665)
T 2dy1_A 80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GD-----------YYALLE 147 (665)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CC-----------HHHHHH
T ss_pred eCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hh-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 43 345778
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
+++..+. . ..+.+.|+..+ + ++.|+ +|+.. .+.| ||++ +++...+
T Consensus 148 ~l~~~l~-~-----~~~~~~Pi~~~----~-----------------~~~g~-~d~~~--~~~~---~~~~--g~~~~~~ 192 (665)
T 2dy1_A 148 DLRSTLG-P-----ILPIDLPLYEG----G-----------------KWVGL-IDVFH--GKAY---RYEN--GEEREAE 192 (665)
T ss_dssp HHHHHHC-S-----EEECEEEEEET----T-----------------EEEEE-EETTT--TEEE---EEET--TEEEEEC
T ss_pred HHHHHhC-C-----cceEEeeecCC----C-----------------cccch-hhhhh--hhee---ecCC--CceeEec
Confidence 8887775 1 12344554211 1 12233 55543 3555 5554 2365555
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HHHHH
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SGFTD 448 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~lld 448 (989)
.+. .|.+++.++++++++.+...+++.+++||+ |..++.++++..++..+. .++|.+++++ +.||+
T Consensus 193 ~~~----~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~--~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~ 266 (665)
T 2dy1_A 193 VPP----EERERVQRFRQEVLEAIVETDEGLLEKYLE--GEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLE 266 (665)
T ss_dssp CCG----GGHHHHHHHHHHHHHHHHTTCHHHHHHHHH--TCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHH
T ss_pred CCH----HHHHHHHHHHHHHHHHHHhCCHHHHHHHHC--CCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHHHH
Confidence 443 488899999999999876666666788998 689999999998888765 5788888874 78999
Q ss_pred HHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccC
Q 001965 449 MLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGE 528 (989)
Q Consensus 449 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~ 528 (989)
+|++++|+|.++ ++++|++++|||++.+++.| .++|+|||||+|++||+|++.+
T Consensus 267 ~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G-~~~~~rV~sG~l~~g~~v~~~~- 320 (665)
T 2dy1_A 267 LILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMG-QVAYLRLYRGRLKPGDSLQSEA- 320 (665)
T ss_dssp HHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTE-EEEEEEEEESEECTTEEEBCTT-
T ss_pred HHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCC-eEEEEEEcccEEecCCEEEcCC-
Confidence 999999999752 14689999999999999864 5999999999999999998654
Q ss_pred CCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCcc--ccccccccCCcceEEE
Q 001965 529 GYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDV--YIFRPLQFNTLPVVKT 606 (989)
Q Consensus 529 ~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~--~~~~~~~~~~~Pv~~v 606 (989)
+.++|++|+.++|+++.++++|.|||||+|.|++++.+ |+||++. ... ..|+++++ +.|++++
T Consensus 321 ----------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~-Gdtl~~~---~~~~~~~l~~~~~-~~P~~~~ 385 (665)
T 2dy1_A 321 ----------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHR-GMVLWQG---EKPESEEVPFARL-PDPNVPV 385 (665)
T ss_dssp ----------SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCT-TCEEESS---SCCCGGGSCCCCC-CCCCEEE
T ss_pred ----------CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCcc-CCEEecC---CCccccccCCCCC-CCceEEE
Confidence 24799999999999999999999999999999998764 8999973 334 67889886 6899999
Q ss_pred EeeeCCCCChhHHHHHHHHHhhcCCeeEEEE-ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeecc
Q 001965 607 ATEPLNPSELPKMVEGLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVES 685 (989)
Q Consensus 607 aIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~-eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~ 685 (989)
+|+|.+++|++||.+||+||.++||++++.. +||||++|+||||||||||++||+ +|+ ++|++++|+|+|||||+++
T Consensus 386 ~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~-v~v~~~~p~V~yrEti~~~ 463 (665)
T 2dy1_A 386 ALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYG-VEVEFSVPKVPYRETIKKV 463 (665)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTT-CCEEEECCCCCCEEEESSC
T ss_pred EEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCC-ceEEEeCCEEEEEEeeccc
Confidence 9999999999999999999999999999988 789999999999999999999999 996 9999999999999999877
Q ss_pred cccee--eeecC--CCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceE
Q 001965 686 SSMKC--FAETP--NKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNIL 761 (989)
Q Consensus 686 s~~~~--~a~t~--nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil 761 (989)
+.... ..++. .+.+++++++||++ .+.|
T Consensus 464 ~~~~~~~~k~~gg~g~~~~v~~~~eP~~------------------------------------------------g~~f 495 (665)
T 2dy1_A 464 AEGQGKYKKQTGGHGQYGDVWLRLEPAS------------------------------------------------EYGF 495 (665)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEECS------------------------------------------------SCEE
T ss_pred eeeeeecccccCCCcceEEEEEEEEECC------------------------------------------------CCEE
Confidence 64311 11111 11267999999986 1467
Q ss_pred eccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCC
Q 001965 762 LDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATP 841 (989)
Q Consensus 762 ~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~p 841 (989)
.|++.++.+|++|++ +|++||+||+++||||||||+||+|+|+|+++|+.. ....++.+|+|+||++||++|+|
T Consensus 496 ~~~~~~g~~~~~~~~----~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~d--s~~~~f~~a~~~a~~~a~~~a~p 569 (665)
T 2dy1_A 496 EWRITGGVIPSKYQE----AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVD--SSDLAFQIAASLAFKKVMAEAHP 569 (665)
T ss_dssp EECCCTTSSCGGGHH----HHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTT--BCHHHHHHHHHHHHHHHHHHSCE
T ss_pred eeeccCCcchHHHHH----HHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCC--CCHHHHHHHHHHHHHHHHhhCCC
Confidence 778888889999975 666999999999999999999999999999986422 12346778999999999999999
Q ss_pred eeeeeeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeecccee
Q 001965 842 RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWA 921 (989)
Q Consensus 842 rLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~ 921 (989)
+||||||.|+|+||++++|+||++|++|||+|+++++..| +++|+|++|++|+|||+++|||+|+|+|+|+|.|+||+
T Consensus 570 ~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~--~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~ 647 (665)
T 2dy1_A 570 VLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGA--LSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYA 647 (665)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred EEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCC--eEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCcee
Confidence 9999999999999999999999999999999999988654 79999999999999999999999999999999999999
Q ss_pred ecCCCCccc
Q 001965 922 IVPGDPLDK 930 (989)
Q Consensus 922 ~vp~dp~~~ 930 (989)
++|++++++
T Consensus 648 ~~~~~~~~~ 656 (665)
T 2dy1_A 648 EVPPHLAQR 656 (665)
T ss_dssp ECCHHHHHH
T ss_pred ECCccHHHH
Confidence 999866543
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=3.5e-77 Score=712.60 Aligned_cols=457 Identities=21% Similarity=0.289 Sum_probs=342.9
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCC---cceeccCccceeeeeEEEEeeeeEEEeecCCCCce
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEK---HTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSY 211 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~---~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~ 211 (989)
+...++|||||+||+|||||||+++||+.+|.+.+.|.+..+ ..+++|+.+.|++|||||+++.+++.| +++
T Consensus 26 ~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-----~~~ 100 (548)
T 3vqt_A 26 REAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-----RDR 100 (548)
T ss_dssp HHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-----TTE
T ss_pred hcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-----CCE
Confidence 345789999999999999999999999999999888776544 358999999999999999999999999 789
Q ss_pred EEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHH
Q 001965 212 LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKL 291 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l 291 (989)
+|||||||||+||..||.++|+++|+||+||||++|+++||+.+|++|.+.++|+|+|||||||.+++ +
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad-----------~ 169 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH-----------P 169 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC-----------H
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc-----------h
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 4
Q ss_pred HHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCe
Q 001965 292 RHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRV 371 (989)
Q Consensus 292 ~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~ 371 (989)
..+++++++.|+.. ..+.+.|+.. ++ .|.|+ +|+.....++|..- .+++
T Consensus 170 ~~~~~~i~~~l~~~-----~~p~~~Pig~----~~-----------------~f~g~-vdl~~~~~~~~~~~----~~~~ 218 (548)
T 3vqt_A 170 LDVMADIEQHLQIE-----CAPMTWPIGM----GS-----------------SFKGT-YDLLHKQLHLFSAT----HGGR 218 (548)
T ss_dssp HHHHHHHHHHHTSE-----EEESEEEESC----GG-----------------GCCEE-EETTTTEEEECC----------
T ss_pred hHhhhhhhhhcCCc-----eEeEEeeeec----CC-----------------cccce-Eeeeeeeeeecccc----cCCc
Confidence 67899999999762 3455667532 12 24444 66666666655321 1111
Q ss_pred EEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHH---HHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccCh-----
Q 001965 372 FKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKS---VEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA----- 443 (989)
Q Consensus 372 ~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~---L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~----- 443 (989)
.......... .++... ..+.+..+. ....+.+.+.....+.+.. ..++|+|||++
T Consensus 219 ~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~------g~~~PV~~gSA~~~~G 281 (548)
T 3vqt_A 219 IQSGIVIHGA--------DDPQLD---EYLGDQAEQLRMDLALLEEAGTPFDEERYLK------GELTPVFFGSAINNFG 281 (548)
T ss_dssp -CCCEECCST--------TCTHHH---HHHGGGHHHHHHHHHHHHHHCCCCCHHHHHT------TSEEEEEECBGGGTBS
T ss_pred cccccccccc--------chHHHH---HHHHHHHHHhhhHHHHHhhccCchhHHHHHh------CCcceeeecccccCcC
Confidence 1000000110 011111 111111111 1122223344444433221 25778888874
Q ss_pred -HHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeecc---CCCCceeEEEEEEeceecC
Q 001965 444 -SGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPK---SDCSVFDAFGRVYSGIIQT 519 (989)
Q Consensus 444 -~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~---~~~~~~~a~~RV~SGtL~~ 519 (989)
+.|||+|++++|||.+..... ....+.+.||.++|||+..+ ++. +.++|+|||||+|++
T Consensus 282 v~~LLd~iv~~~PsP~~~~~~~----------------~~~~~~~~p~~a~vfKi~~~~~~~~~-Grla~~RV~sG~l~~ 344 (548)
T 3vqt_A 282 VREMLDMFVEFAPGPQPRPAAT----------------RVVEPGEEAFTGVVFKIQANMDKAHR-DRMAFLRICSGTFTR 344 (548)
T ss_dssp HHHHHHHHHHHSCCSCCEEBSS----------------SEECTTCSSCEEEEEEEECC--------CEEEEEEEESCEET
T ss_pred HHHHHHHHHHhCCCCCCccccc----------------cccCCCCcCceEEEEEEEccCCcCCC-CeEEEEEEecceecC
Confidence 789999999999996532110 01123467999999999887 555 459999999999999
Q ss_pred CCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccC
Q 001965 520 GQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFN 599 (989)
Q Consensus 520 G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~ 599 (989)
|++|++.+.+ +.++|+++++++|++++++++|.|||||+|.|++++.+ |+||++ ......|.++.+
T Consensus 345 g~~v~~~~~~---------~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~-GDTl~~---~~~~~~~~~i~~- 410 (548)
T 3vqt_A 345 GMRLKHHRTG---------KDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKI-GDTFTE---SKEVLKFVGIPN- 410 (548)
T ss_dssp TCEEEETTTT---------EEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCT-TCEEES---SSSCCCBCCCEE-
T ss_pred CCEEEeeccc---------cccccchhhhhccccccccCEEecCCEEEecCCccCcc-CCEecC---CCCccccCCCCC-
Confidence 9999998766 57899999999999999999999999999999999888 799998 345667888875
Q ss_pred CcceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccceE-----Eccc
Q 001965 600 TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVK-----VADP 674 (989)
Q Consensus 600 ~~Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~-----vs~P 674 (989)
+.|++.++|+|++++|.+||.+||++|.++||+..++.++|||++|+|||||||||+++|||++|+ |++. ++.|
T Consensus 411 ~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~-vev~~e~v~~~~P 489 (548)
T 3vqt_A 411 FAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYG-VDAVYEGVSTHTA 489 (548)
T ss_dssp ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHC-CCEEEEECSCCEE
T ss_pred CCCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhC-CCEEEeeccccCc
Confidence 789999999999999999999999999999998888889999999999999999999999999997 9865 6889
Q ss_pred EEEEEeeeecccc
Q 001965 675 VVSFCETVVESSS 687 (989)
Q Consensus 675 ~V~yrETI~~~s~ 687 (989)
+|+|||||...+.
T Consensus 490 ~V~YrEti~~~~~ 502 (548)
T 3vqt_A 490 RWVYCEDKKIFAD 502 (548)
T ss_dssp EEEECSCHHHHHH
T ss_pred eEEecCCccchhh
Confidence 9999999987654
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.2e-70 Score=658.10 Aligned_cols=498 Identities=23% Similarity=0.321 Sum_probs=387.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.+++|||+|+||+|||||||+++|++.++.+...+ ...+++|+.+.|++||+|+++..+.+.|...+++.+.+|||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~----~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inli 78 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE----KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLI 78 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------CCCCSEEEEEECTTSCEEEEEEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc----ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEE
Confidence 46799999999999999999999999888775321 13678999999999999999999998886555667999999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~ 296 (989)
|||||.+|..++.++++.+|+||+|||+++|++.||..+|.++...++|+++|+||+|+...+ ...+.+
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-----------~~~v~~ 147 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-----------VDRVKK 147 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-----------HHHHHH
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-----------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997533 233555
Q ss_pred HHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCC
Q 001965 297 VINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKP 376 (989)
Q Consensus 297 ~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~ 376 (989)
++...++.. + ..++++||+.|.+
T Consensus 148 el~~~lg~~-----------~--~~vi~vSAktg~G-------------------------------------------- 170 (600)
T 2ywe_A 148 QIEEVLGLD-----------P--EEAILASAKEGIG-------------------------------------------- 170 (600)
T ss_dssp HHHHTSCCC-----------G--GGCEECBTTTTBS--------------------------------------------
T ss_pred HHHHhhCCC-----------c--ccEEEEEeecCCC--------------------------------------------
Confidence 555544320 0 1245556553321
Q ss_pred CCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCC
Q 001965 377 PASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPS 456 (989)
Q Consensus 377 ~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPs 456 (989)
...|+++|++++|+
T Consensus 171 ------------------------------------------------------------------I~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 171 ------------------------------------------------------------------IEEILEAIVNRIPP 184 (600)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHHHSCC
T ss_pred ------------------------------------------------------------------chHHHHHHHHhccc
Confidence 12367888899999
Q ss_pred hhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCC
Q 001965 457 AKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEE 536 (989)
Q Consensus 457 P~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~ 536 (989)
|.. ++++|+.++|+|.+.+++. +.++++||+||+|++||.|++...+
T Consensus 185 p~~-------------------------~~~~pl~~lV~~~~~d~~~-G~v~~~rV~sG~l~~Gd~I~~~~~~------- 231 (600)
T 2ywe_A 185 PKG-------------------------DPQKPLKALIFDSYYDPYR-GAVAFVRIFDGEVKPGDKIMLMSTG------- 231 (600)
T ss_dssp CCC-------------------------CTTSCCEEEEEEEEEETTT-EEEEEEEEEESEECTTCEEEETTTT-------
T ss_pred ccc-------------------------cccCCcceeEEEEeecccc-eEEEEEEEEeCEEecCCEEEecccc-------
Confidence 842 5678999999999999876 5699999999999999999998654
Q ss_pred CceEEEEeEEEEeecCcceeccccCCCCEEEEe-e---ccceeeccceeecccCCCcc--ccccccccCCcceEEEEeee
Q 001965 537 DMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE-G---VDASIMKSATLCNLEYDEDV--YIFRPLQFNTLPVVKTATEP 610 (989)
Q Consensus 537 ~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~-G---ld~~~~k~~Tl~~~~~~~~~--~~~~~~~~~~~Pv~~vaIeP 610 (989)
...+|.+++.+.+ ...+++++.||||+++. | +++..+ |+||+.. +.. .++.++++ ++|++.++|+|
T Consensus 232 --~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~-GDtl~~~---~~~~~~~l~~~~~-~~P~v~~~i~p 303 (600)
T 2ywe_A 232 --KEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRI-GDTITHA---KNPTKEPVPGFQP-AKPMVYAGIYP 303 (600)
T ss_dssp --EEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCT-TCEEEES---SSCCSSCCSCCCC-CCCCEEEEEEE
T ss_pred --ceEeeecccccCC-CceECCEEecCceeeeeccccchhhccC-CCEEEeC---CCccccccCCCCC-CCcEEEEEeec
Confidence 4678999998876 58899999999999884 5 445554 7999973 222 35777774 89999999999
Q ss_pred CCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEe-----cchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeecc
Q 001965 611 LNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILG-----TGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVES 685 (989)
Q Consensus 611 ~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g-----~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~ 685 (989)
.++.|.++|.++|++|..+||++.+. .||+|+++.| |||||||+++++|+++|+ +++.++.|.|+|||||...
T Consensus 304 ~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~~-~~v~~~~P~V~yreti~~~ 381 (600)
T 2ywe_A 304 AEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREYG-VKIITTAPNVIYRVKKKFT 381 (600)
T ss_dssp CTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHSC-CCEEECCCEECEEEEETTC
T ss_pred cccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhcC-ceEEEEeeeEEEEEEecCC
Confidence 99999999999999999999999887 6788877777 999999999999999997 9999999999999998631
Q ss_pred ccceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccC
Q 001965 686 SSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDT 765 (989)
Q Consensus 686 s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t 765 (989)
.. . +-+++
T Consensus 382 g~--------------~---------------------------------------------------------~~~~~- 389 (600)
T 2ywe_A 382 DE--------------V---------------------------------------------------------IEVRN- 389 (600)
T ss_dssp SS--------------C---------------------------------------------------------EEESS-
T ss_pred Cc--------------E---------------------------------------------------------EEEeC-
Confidence 10 0 00000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeee
Q 001965 766 LPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLME 845 (989)
Q Consensus 766 ~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlE 845 (989)
| +++|+.+ + .-+.|||
T Consensus 390 -----p------------------------~~~p~~~---------------~--------------------~~~~llE 405 (600)
T 2ywe_A 390 -----P------------------------MDFPDNA---------------G--------------------LIEYVEE 405 (600)
T ss_dssp -----G------------------------GGSCSCG---------------G--------------------GEEEEEE
T ss_pred -----h------------------------hhCCCCC---------------c--------------------ccccccC
Confidence 0 2345444 0 0037999
Q ss_pred eeEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhc-cchhHHHhhcCCccEEEeeeccceeec-
Q 001965 846 PVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIES-FGFETDLRYHTQGQAFSLSVFDHWAIV- 923 (989)
Q Consensus 846 Pi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~es-fgf~~dLRs~T~G~a~~~~~F~hw~~v- 923 (989)
|||.++|.+|++++|+|+++|++|||++++++...+ ....|+|.+|++|+ |||.++|||.|+|+|+|.+.|+||+++
T Consensus 406 P~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~ 484 (600)
T 2ywe_A 406 PFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSD 484 (600)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECC
T ss_pred CeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEcc
Confidence 999999999999999999999999999999887544 47999999999999 899999999999999999999999999
Q ss_pred --------CCCCcccccccCCCCCCChhhHHHHHHHHHH
Q 001965 924 --------PGDPLDKSIVLRPLEPAPIQHLAREFMVKTR 954 (989)
Q Consensus 924 --------p~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R 954 (989)
.|+|.|.-..+-.. ..+...+|.++.|.+
T Consensus 485 ~~~~~~~~ng~~v~~~~~~~~~--~~~~~~~~~~~~~~~ 521 (600)
T 2ywe_A 485 LIKLTVLINKKPVDALSFIVHA--DRAQKFARRVAEKLR 521 (600)
T ss_dssp EEEEEEEESSSBCGGGCEEEEG--GGHHHHHHHHHHHHH
T ss_pred ccccccccCCCEeccchhhhhh--HHHHHHHHHHHHHHH
Confidence 77777653332222 346678888888766
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1e-68 Score=642.79 Aligned_cols=494 Identities=22% Similarity=0.328 Sum_probs=378.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
++||||+|+||+|||||||+++|++.++.+... . ...+++|+.+.|++||+|+++..+.+.|...+++.+.+||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~---~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liD 77 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR---E-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFID 77 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC------------------------------CEEEEEEECTTSCEEEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc---c-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEE
Confidence 579999999999999999999999998877532 1 136789999999999999999999998875556679999999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHH
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEV 297 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~ 297 (989)
||||.+|..++.++++.+|+||+|||+++|++.||...|..+...++|+|+|+||+|+...+ ..++.++
T Consensus 78 TPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-----------~~~v~~e 146 (599)
T 3cb4_D 78 TPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-----------PERVAEE 146 (599)
T ss_dssp CCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-----------HHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-----------HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997533 2334555
Q ss_pred HHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCC
Q 001965 298 INNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPP 377 (989)
Q Consensus 298 in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~ 377 (989)
+...++.. + ..++++||+.|.+
T Consensus 147 i~~~lg~~-----------~--~~vi~vSAktg~G--------------------------------------------- 168 (599)
T 3cb4_D 147 IEDIVGID-----------A--TDAVRCSAKTGVG--------------------------------------------- 168 (599)
T ss_dssp HHHHTCCC-----------C--TTCEEECTTTCTT---------------------------------------------
T ss_pred HHHHhCCC-----------c--ceEEEeecccCCC---------------------------------------------
Confidence 55554320 0 1245555553311
Q ss_pred CCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCCh
Q 001965 378 ASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSA 457 (989)
Q Consensus 378 ~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP 457 (989)
.+.|++.|++++|+|
T Consensus 169 -----------------------------------------------------------------I~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 169 -----------------------------------------------------------------VQDVLERLVRDIPPP 183 (599)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHSCCC
T ss_pred -----------------------------------------------------------------chhHHHHHhhcCCCc
Confidence 123678888899998
Q ss_pred hhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCC
Q 001965 458 KDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEED 537 (989)
Q Consensus 458 ~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~ 537 (989)
.. ++++|+.++|++++.+++. +.++++||+||+|++||+|++...+
T Consensus 184 ~~-------------------------~~~~p~~alI~d~~~d~~~-G~v~~~rV~sG~l~~Gd~v~~~~~~-------- 229 (599)
T 3cb4_D 184 EG-------------------------DPEGPLQALIIDSWFDNYL-GVVSLIRIKNGTLRKGDKVKVMSTG-------- 229 (599)
T ss_dssp CC-------------------------CTTSCCEEEEEEEEEETTT-EEEEEEEEEESCEESSCEEEETTTC--------
T ss_pred cc-------------------------cccCCceeeeeeccccccc-cEEEEEEEEeCEEecCCEEEecccc--------
Confidence 41 5678999999999999876 5699999999999999999998755
Q ss_pred ceEEEEeEEEEeecCcceeccccCCCCEEEEe-e---ccceeeccceeecccCCCcc--ccccccccCCcceEEEEeeeC
Q 001965 538 MTVKEVTKLWIYQARDRIPISSAPPGSWVLIE-G---VDASIMKSATLCNLEYDEDV--YIFRPLQFNTLPVVKTATEPL 611 (989)
Q Consensus 538 ~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~-G---ld~~~~k~~Tl~~~~~~~~~--~~~~~~~~~~~Pv~~vaIeP~ 611 (989)
...+|.+++.+.+. .++++++.|||++++. | +++..+ |+||+.. +.. .++.++.+ ++|++.++++|.
T Consensus 230 -~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~-GDtl~~~---~~~~~~~l~~~~~-~~P~v~~~i~p~ 302 (599)
T 3cb4_D 230 -QTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPV-GDTLTLA---RNPAEKALPGFKK-VKPQVYAGLFPV 302 (599)
T ss_dssp -CEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCT-TCEEEES---SSCCSSCCTTCCC-CCCCEEEEEEES
T ss_pred -ceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCcc-CCEeeec---CCccccccccccC-CCcceEEEEEec
Confidence 46789999988765 8899999999998884 4 445555 7999973 222 45677774 899999999999
Q ss_pred CCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEe-----cchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccc
Q 001965 612 NPSELPKMVEGLRKISKSYPLAITKVEESGEHTILG-----TGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686 (989)
Q Consensus 612 ~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g-----~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s 686 (989)
+..|.++|.++|.+|.++||++.+. +||+|+++.| +||||||+++++|+++|+ +++.++.|.|+|||||...+
T Consensus 303 ~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~-~~~~~~~P~V~yreti~~g~ 380 (599)
T 3cb4_D 303 SSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREYD-LDLITTAPTVVYEVETTSRE 380 (599)
T ss_dssp SGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC-CCEEECCCEECEEEEESSSC
T ss_pred CccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHcC-ceEEEEeeeEEEEEEecCCc
Confidence 9999999999999999999999887 7888888777 999999999999999997 99999999999999986321
Q ss_pred cceeeeecCCCceEEEEEEEeCCchhhhhhhcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCC
Q 001965 687 SMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTL 766 (989)
Q Consensus 687 ~~~~~a~t~nk~~~i~~~~ePl~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~ 766 (989)
.. .+++
T Consensus 381 ~~------------------------------------------------------------------------~~~~-- 386 (599)
T 3cb4_D 381 VI------------------------------------------------------------------------YVDS-- 386 (599)
T ss_dssp EE------------------------------------------------------------------------EESS--
T ss_pred eE------------------------------------------------------------------------EecC--
Confidence 10 0000
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeee
Q 001965 767 PTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEP 846 (989)
Q Consensus 767 ~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEP 846 (989)
|. . +|.. +. -+.||||
T Consensus 387 ----p~-~-----------------------~p~~--------------------~~----------------~~~llEP 402 (599)
T 3cb4_D 387 ----PS-K-----------------------LPAV--------------------NN----------------IYELREP 402 (599)
T ss_dssp ----GG-G-----------------------SCCG--------------------GG----------------EEEEEEE
T ss_pred ----hh-h-----------------------CCCc--------------------cc----------------cchhhcc
Confidence 00 0 0100 00 0379999
Q ss_pred eEEEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhc-cchhHHHhhcCCccEEEeeeccceeec--
Q 001965 847 VYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIES-FGFETDLRYHTQGQAFSLSVFDHWAIV-- 923 (989)
Q Consensus 847 i~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~es-fgf~~dLRs~T~G~a~~~~~F~hw~~v-- 923 (989)
||.++|.+|++++|+|+++|++|||++++++...+ ...|+|.+|++|+ |||.++|||.|+|.|+|.+.|+||+++
T Consensus 403 ~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~--~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~ 480 (599)
T 3cb4_D 403 IAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN--QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM 480 (599)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTT--EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCE
T ss_pred ceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCC--eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecc
Confidence 99999999999999999999999999999988654 7999999999999 899999999999999999999999999
Q ss_pred -------CCCCcccccccCCCCCCChhhHHHHHHHHHH
Q 001965 924 -------PGDPLDKSIVLRPLEPAPIQHLAREFMVKTR 954 (989)
Q Consensus 924 -------p~dp~~~~i~~~~l~~~~~~~~ar~~~~~~R 954 (989)
.|+|.|.--.+-.. ..+...+|.++.|.+
T Consensus 481 ~~~~~~~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~ 516 (599)
T 3cb4_D 481 VRVDVLINGERVDALALITHR--DNSQNRGRELVEKMK 516 (599)
T ss_dssp EEEEEEETTEEEEEEEEEEEG--GGHHHHHHHHHHHHH
T ss_pred cccccccCCcEecccceeccH--HHHHHHHHHHHHHHH
Confidence 67766643222222 345678888888765
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=5.5e-60 Score=562.18 Aligned_cols=450 Identities=19% Similarity=0.246 Sum_probs=313.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCC---cceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEK---HTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~---~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
.++|||+|+||+|||||||+++|+..++.+...|....+ ..+++|+.+.|++||+|+.+....+.+ +++.++
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~ 85 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-----HDCLVN 85 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-----TTEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-----CCeEEE
Confidence 568999999999999999999999888777554443321 255789999999999999998888887 678999
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHH
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
|||||||.+|..++.++++.+|+||+|||+.+|++.+|+.+++.+...++|+++|+||+|+...+ ..++
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~-----------~~~~ 154 (529)
T 2h5e_A 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD-----------PMEL 154 (529)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC-----------HHHH
T ss_pred EEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc-----------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997543 1346
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
+++++..++... .+...|+ +|++.+ .|+ .|+.....+.|.+ ..+.++..
T Consensus 155 ~~~i~~~l~~~~-----~~~~~pi------~sa~~~---------------~Gv-~dl~~~~~~~~~~----~~g~~~~~ 203 (529)
T 2h5e_A 155 LDEVENELKIGC-----APITWPI------GCGKLF---------------KGV-YHLYKDETYLYQS----GKGHTIQE 203 (529)
T ss_dssp HHHHHHHHCCEE-----EESEEEE------SCGGGC---------------CEE-EETTTTEEEECCT----TCCSSCCC
T ss_pred HHHHHHHhCCCc-----cceecce------ecccCc---------------cee-eehhhhhHhhhcc----cCCCcccc
Confidence 777777775421 1222232 444433 333 4544444444411 00110000
Q ss_pred -CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHH--hhhcccccCh------HH
Q 001965 375 -KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLR--LACSSVFGSA------SG 445 (989)
Q Consensus 375 -~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~--~v~~~~~g~~------~~ 445 (989)
.+.+.-....+.+. + .++.+++++++ ..+..+++....+..+. .++|+|+|++ +.
T Consensus 204 ~~~i~~~~~~~l~e~------------~--~~~~~~~~~e~--~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~ 267 (529)
T 2h5e_A 204 VRIVKGLNNPDLDAA------------V--GEDLAQQLRDE--LELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH 267 (529)
T ss_dssp CCEECCSSCHHHHHH------------H--CHHHHHHHHHH--HHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH
T ss_pred cccCCCCCHHHHHHh------------h--CHHHHHHhhcc--cchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH
Confidence 01111011111111 1 12233444442 22222223223333332 6789999985 68
Q ss_pred HHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCC-CCCeEEEEEeeec--c-CCCCceeEEEEEEeceecCCC
Q 001965 446 FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDP-SGPLMVNVTKLYP--K-SDCSVFDAFGRVYSGIIQTGQ 521 (989)
Q Consensus 446 lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~-~~pl~~~V~K~~~--~-~~~~~~~a~~RV~SGtL~~G~ 521 (989)
|||+|++++|+|...... ...|++ ++||+++|||+.. + ++. +.++|+|||||+|++||
T Consensus 268 LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~vfKi~~~~d~~~~-G~i~~~RV~sG~l~~g~ 329 (529)
T 2h5e_A 268 MLDGLVEWAPAPMPRQTD-----------------TRTVEASEDKFTGFVFKIQANMDPKHR-DRVAFMRVVSGKYEKGM 329 (529)
T ss_dssp HHHHHHHHSCSSCCEEBS-----------------SCEECTTCCSCEEEEEEECSSCCSSSS-CCCEEEEEEESCEETTC
T ss_pred HHHHHHHhCCCCCccccc-----------------ccccCCCCCCeEEEEEEEeeccCcCCC-ceEEEEEEecCeEcCCC
Confidence 999999999999753210 012233 6899999999976 3 344 45999999999999999
Q ss_pred EEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCc
Q 001965 522 SVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTL 601 (989)
Q Consensus 522 ~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~ 601 (989)
+|++.+.+ +.++|++++.++|..+.++++|.|||||+|.|++.+.+ |+||++. . ...|.++.+ +.
T Consensus 330 ~v~~~~~~---------~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~-Gdtl~~~---~-~~~~~~~~~-~~ 394 (529)
T 2h5e_A 330 KLRQVRTA---------KDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQI-GDTFTQG---E-MMKFTGIPN-FA 394 (529)
T ss_dssp EEEETTTT---------EEEECSCEECCCC-----CCEECTTCEEEECCSSCCCT-TCEEESS---C-CCCBCCCEE-EC
T ss_pred EEEEeeCC---------CEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCcc-CCEeecC---C-ccccCCCCC-CC
Confidence 99998755 57899999999999999999999999999999998877 8999973 2 356788874 78
Q ss_pred ceEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEee
Q 001965 602 PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCET 681 (989)
Q Consensus 602 Pv~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrET 681 (989)
|++.++|+|+++.|.+||.+||++|.++||+...+.++|||++|+||||||||++++||+++|+ ++|.+++|.|+||||
T Consensus 395 P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~-v~v~~~~~~v~y~et 473 (529)
T 2h5e_A 395 PELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYN-VEAVYESVNVATARW 473 (529)
T ss_dssp CSEEEEEEESCC---CTHHHHHHHHHHTTSCEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSS-CCEEEECCCCSEEEE
T ss_pred ccEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhC-cEEEEecCceeEEEE
Confidence 9999999999999999999999999999994444568999999999999999999999999997 999999999999999
Q ss_pred eec
Q 001965 682 VVE 684 (989)
Q Consensus 682 I~~ 684 (989)
|..
T Consensus 474 i~~ 476 (529)
T 2h5e_A 474 VEC 476 (529)
T ss_dssp EEC
T ss_pred EcC
Confidence 953
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=3.8e-59 Score=554.32 Aligned_cols=450 Identities=19% Similarity=0.218 Sum_probs=343.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCC---CcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE---KHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~---~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
+++|||+|+||+|||||||+++|++.++.+...|.... ....++|+.+.|++||+|+.+....+.+ +++.++
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~i~ 85 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-----KDYLIN 85 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-----TTEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-----CCEEEE
Confidence 57899999999999999999999999988865554332 1355789999999999999999988888 678999
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHH
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHT 294 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~i 294 (989)
|||||||.+|..++.++++.+|+||+|||+..|++.++..+|+++...++|+++|+||+|+...+ ...+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-----------~~~~ 154 (528)
T 3tr5_A 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-----------SIEL 154 (528)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-----------HHHH
T ss_pred EEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-----------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997533 2346
Q ss_pred HHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEe
Q 001965 295 IEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374 (989)
Q Consensus 295 i~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~ 374 (989)
++++...++... .+...|+... ..|.|+ +|+.....+.|.+ ..+.+...
T Consensus 155 l~ei~~~l~~~~-----~~~~~pig~~---------------------~~f~gv-~dl~~~~~~~~~~----~~~~~~~~ 203 (528)
T 3tr5_A 155 LDEIESILRIHC-----APVTWPIGMG---------------------KYFKGI-YHLIEDAIYLYQP----GKHERVGE 203 (528)
T ss_dssp HHHHHHHHCCEE-----EESEEEESCG---------------------GGCCEE-EETTTTEEEECCT----TSSSSTTC
T ss_pred HHHHHHhhCCCc-----eeeecccccC---------------------CceeEE-EEeecCEEEEecC----CCCCcccc
Confidence 677777765421 2233343221 226676 7887777766632 11111111
Q ss_pred CCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHH--HhhhcccccCh------HHH
Q 001965 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLL--RLACSSVFGSA------SGF 446 (989)
Q Consensus 375 ~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll--~~v~~~~~g~~------~~l 446 (989)
...+... -++ .+...+. +.++++++++ .+..++...-.+..+ ..++|+|++|+ +.|
T Consensus 204 ~~~~~~~--------~~~---~~~~~l~---~~~~~~~e~~--~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~L 267 (528)
T 3tr5_A 204 SERIEGI--------NNP---ELDKKLG---DLASELRNEI--ELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGEL 267 (528)
T ss_dssp SCEEECT--------TCH---HHHHHHT---HHHHHHHHHH--HHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHH
T ss_pred ccccccc--------chH---HHHHHHH---HHHHHHhhhc--chhhhhhhHHHHHHHhcCceeEEEeccccCCccHHHH
Confidence 1111111 111 1111111 1133344321 111111111112222 26788888885 789
Q ss_pred HHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccC-CCCCeEEEEEeeec--cC-CCCceeEEEEEEeceecCCCE
Q 001965 447 TDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCD-PSGPLMVNVTKLYP--KS-DCSVFDAFGRVYSGIIQTGQS 522 (989)
Q Consensus 447 ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d-~~~pl~~~V~K~~~--~~-~~~~~~a~~RV~SGtL~~G~~ 522 (989)
|++|++++|+|.+..... ..++ .++|++++|||+.+ ++ +. +.++|+|||||+|++|+.
T Consensus 268 ld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~~~-g~l~~~RV~sG~l~~g~~ 329 (528)
T 3tr5_A 268 LDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPGHR-DRIAFLRIASGQYQKGMK 329 (528)
T ss_dssp HHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-CCC-CEEEEEEEEESCEETTEE
T ss_pred HHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCccCC-ceEEEEEEecCeEcCCCE
Confidence 999999999997532210 1123 26899999999986 67 54 569999999999999999
Q ss_pred EEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecccCCCccccccccccCCcc
Q 001965 523 VRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLP 602 (989)
Q Consensus 523 V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~P 602 (989)
|++.+.+ +.++|++++.++|+.+.++++|.|||||+|.|++.+.+ |+||++. ....+.++.+ +.|
T Consensus 330 v~~~~~~---------~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~-GDtl~~~----~~~~~~~~~~-~~P 394 (528)
T 3tr5_A 330 AYHVRLK---------KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQI-GDTFTQG----ERFKFTGIPN-FAS 394 (528)
T ss_dssp EEETTTT---------EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCT-TCEEESS----CCCCBCCCEE-ECC
T ss_pred EEecCCC---------ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCcc-CCEEcCC----CCcccCCCCC-CCC
Confidence 9997765 67899999999999999999999999999999988777 7999972 2356777775 689
Q ss_pred eEEEEeeeCCCCChhHHHHHHHHHhhcCCeeEEEEccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeee
Q 001965 603 VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETV 682 (989)
Q Consensus 603 v~~vaIeP~~~~dl~kL~~gL~kL~k~DP~l~~~~eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI 682 (989)
++.++|+|+++.|.+||.+||++|.+|||+...+.++|||++|+||||||||++++||+++|+ +++.+++|.|+|+++|
T Consensus 395 ~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~-v~v~~~~~~v~~~~~i 473 (528)
T 3tr5_A 395 ELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYN-VKCVYESVNVVTARWV 473 (528)
T ss_dssp SEEEEEEESCGGGHHHHHHHHHHHHHTTSCEEEEETTCCCEEEEESSTHHHHHHHHHHHHHHC-CCEEEECCSCCEEEEE
T ss_pred CEEEEEEECChhHHHHHHHHHHHHHhcCCeEEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhC-cEEEEecCceEEEEEe
Confidence 999999999999999999999999999998556678999999999999999999999999997 9999999999999998
Q ss_pred ec
Q 001965 683 VE 684 (989)
Q Consensus 683 ~~ 684 (989)
..
T Consensus 474 ~~ 475 (528)
T 3tr5_A 474 IC 475 (528)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.9e-35 Score=324.88 Aligned_cols=198 Identities=22% Similarity=0.314 Sum_probs=159.0
Q ss_pred EEeeccceeeccceeecccCCCccccccccccCCcceEEEEeeeCCC----CC-----hhHHHHHHHHHhhcCCeeEEEE
Q 001965 567 LIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNP----SE-----LPKMVEGLRKISKSYPLAITKV 637 (989)
Q Consensus 567 ~I~Gld~~~~k~~Tl~~~~~~~~~~~~~~~~~~~~Pv~~vaIeP~~~----~d-----l~kL~~gL~kL~k~DP~l~~~~ 637 (989)
+|.||+++.+ |+|||+. ....++.++.+ ++|++.++|+|.+. +| ..||.++|++|.++||+|.+..
T Consensus 2 av~Gl~~~~i-GDTl~~~---~~p~~L~~~~~-~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGELKI-SDTICAQ---NAVEALPALSV-DEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------C-CCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCCcc-CCEEcCC---CCcccCCCCCC-CCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 4678888777 7999983 44567788885 89999999999988 76 6799999999999999999887
Q ss_pred -ccCCeEEEEecchhhHHHHHHHHHhhhcccceEEcccEEEEEeeeeccccceeeeecCCCceEEEEEEEeCCchhhhhh
Q 001965 638 -EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDI 716 (989)
Q Consensus 638 -eetGE~vI~g~GElhLe~~l~dLr~~y~~iei~vs~P~V~yrETI~~~s~~~~~a~t~nk~~~i~~~~ePl~~~~~~~i 716 (989)
++++|++|+|||||||++++++||++ + +++.++.|.|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE-g-~ev~v~~P~V~YrEt-----~----------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE-G-FELAVSRPEVIIXEE-----D----------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH-T-BCEEECCCEECCEEE-----T-----------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc-C-ceEEEeCCEEEEEEE-----C-----------------------------
Confidence 67999999999999999999999999 6 999999999999996 0
Q ss_pred hcCccccccchhhhhhhhhhhccchhhhccceEEeCCCCCCCceEeccCCCchhhHHHHHHHHHHHHHHHHHhHhcCCCC
Q 001965 717 ENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLC 796 (989)
Q Consensus 717 e~~~~~~~~~~~~~~~~~~~~~~wd~l~a~~iw~fgP~~~g~nil~d~t~~~~v~k~~l~~v~~si~~Gf~~a~~~GPL~ 796 (989)
|
T Consensus 121 ----------------------------------------G--------------------------------------- 121 (332)
T 3e3x_A 121 ----------------------------------------G--------------------------------------- 121 (332)
T ss_dssp ----------------------------------------T---------------------------------------
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred CCCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeec
Q 001965 797 DEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTAD 876 (989)
Q Consensus 797 ~ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~ 876 (989)
+||||||.|+|.||++++|.|+++|++|||+|.++
T Consensus 122 ---------------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m 156 (332)
T 3e3x_A 122 ---------------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDM 156 (332)
T ss_dssp ---------------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred ---------------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCc
Confidence 78999999999999999999999999999999998
Q ss_pred ccCCCCCceEEEEEccchhccchhHHHhhcCCccEEEeeeccceeec-CCCCccc
Q 001965 877 VPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIV-PGDPLDK 930 (989)
Q Consensus 877 ~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~~~~F~hw~~v-p~dp~~~ 930 (989)
++..+ +.++|+|.+|++++|||.++||+.|+|+|+|++.|+||+++ ||+...+
T Consensus 157 ~~~~~-g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r 210 (332)
T 3e3x_A 157 APDGK-GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQR 210 (332)
T ss_dssp EECSS-SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCC
T ss_pred eECCC-CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccccc
Confidence 88643 47899999999999999999999999999999999999999 8987653
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.96 E-value=3.3e-28 Score=283.86 Aligned_cols=288 Identities=19% Similarity=0.287 Sum_probs=210.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCccccc------------CCCCCCcceeccCccceeeeeEEEEeeeeEEEeec
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTF------------DPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED 205 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~------------g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 205 (989)
...+||+++||+|||||||+++|++.++.+.+. |.......+.+|..+.|++||+|+......+.+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-- 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-- 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence 456799999999999999999999998877531 222233456789999999999999988877766
Q ss_pred CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcc-------cchHHHHHHHHHcCCC-EEEEEEcccccc
Q 001965 206 SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVM-------VNTERAIRHAIQERLP-IVVVVNKVDRLI 277 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~-------~qt~~~l~~~~~~~ip-~ilviNKiD~~~ 277 (989)
.++.++|||||||.+|...+..+++.+|+||||||+.+|++ .||.+++..+...++| +|+|+||||+..
T Consensus 93 ---~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 ---EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred ---CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 66789999999999999999999999999999999999986 7999999999999998 899999999964
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhh
Q 001965 278 TELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFAS 357 (989)
Q Consensus 278 ~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~ 357 (989)
.+. ...+++.+.+++..++......... .-.++..||+.|++.. ++.+ .
T Consensus 170 ~~~------~~~~~~~i~~~~~~~l~~~g~~~~~-------~~~~i~iSA~~G~ni~----------------~l~~--~ 218 (439)
T 3j2k_7 170 VNW------SNERYEECKEKLVPFLKKVGFNPKK-------DIHFMPCSGLTGANLK----------------EQSD--F 218 (439)
T ss_pred cch------HHHHHHHHHHHHHHHHHHhcccccC-------CeeEEEeeccCCcccc----------------cccc--c
Confidence 321 1223456777777777653311000 1125667888876421 0000 0
Q ss_pred hhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhc
Q 001965 358 RLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACS 437 (989)
Q Consensus 358 ~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~ 437 (989)
.-| |+ .
T Consensus 219 ~~w----~~--------------------------------------g-------------------------------- 224 (439)
T 3j2k_7 219 CPW----YI--------------------------------------G-------------------------------- 224 (439)
T ss_pred ccc----cC--------------------------------------c--------------------------------
Confidence 112 10 0
Q ss_pred ccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEecee
Q 001965 438 SVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGII 517 (989)
Q Consensus 438 ~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL 517 (989)
..|++.+ ..+|.|.. +.++|+.+.|...+. +. |.++.|||.||+|
T Consensus 225 ------~~L~~~l-~~i~~~~~-------------------------~~~~p~r~~v~~~~~--~~-G~v~~G~v~~G~l 269 (439)
T 3j2k_7 225 ------LPFIPYL-DNLPNFNR-------------------------SVDGPIRLPIVDKYK--DM-GTVVLGKLESGSI 269 (439)
T ss_pred ------hHHHHHH-HhCCCCcc-------------------------CCCCCeEEEEEEEEc--CC-CeEEEEEEEeeEE
Confidence 0122222 23555521 346788888888765 23 4589999999999
Q ss_pred cCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEE--Eeeccc-eeeccceeec
Q 001965 518 QTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVL--IEGVDA-SIMKSATLCN 583 (989)
Q Consensus 518 ~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~--I~Gld~-~~~k~~Tl~~ 583 (989)
++||.|.+++.+ ...+|..|+. ...++++|.||+.|+ |.|++. .+.+|+++++
T Consensus 270 ~~Gd~v~~~p~~---------~~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~ 325 (439)
T 3j2k_7 270 FKGQQLVMMPNK---------HNVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFILCD 325 (439)
T ss_pred ecCCEEEEccCC---------ceEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEecC
Confidence 999999998755 3567888765 456899999999999 677764 4456788876
No 15
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1e-29 Score=306.34 Aligned_cols=319 Identities=20% Similarity=0.258 Sum_probs=183.5
Q ss_pred cCCCCCCCcCcccccccceeEeecccccccccHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccc-----
Q 001965 95 DEDEQPLEQPIIKPVKNIKFEVGVKDSSTYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST----- 169 (989)
Q Consensus 95 eed~q~l~~pii~p~~~~~~~~~e~~l~~~~~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~----- 169 (989)
|+|.|+..+++.++...+.+...+.. -......++||+|+||+|||||||+++|++.++.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~ 211 (592)
T 3mca_A 144 ESDNQPEKKKIKKQNPTDLVSVPEIF------------EQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211 (592)
T ss_dssp -----------CCCCCCCCSCCCCGG------------GGSCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------
T ss_pred cccccccccccccCCcccccchhhHh------------hhccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHH
Confidence 46777777777766555544333110 0123467889999999999999999999988766642
Q ss_pred -------cCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEe
Q 001965 170 -------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIV 242 (989)
Q Consensus 170 -------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVV 242 (989)
.|.......+++|..+.|++||+|+......+.+ .++.++|||||||.+|...+..+++.+|+|||||
T Consensus 212 ~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-----~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVV 286 (592)
T 3mca_A 212 LHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-----DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286 (592)
T ss_dssp ----------------------------------------------------CCEEESSSEEEEECCC-------CCSEE
T ss_pred HHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-----CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEE
Confidence 1222223356789999999999999988877766 5678999999999999999999999999999999
Q ss_pred ecCCCc-------ccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHHHHHHHHh-hhhcccCCCce
Q 001965 243 DAAEGV-------MVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHI-SAASTTAGNVQ 313 (989)
Q Consensus 243 Da~egv-------~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l-~~~~~~~~~~~ 313 (989)
|+.+|. +.||.+++..+...++| +|+|+||+|+...+ ..++..+.++++.++ ......
T Consensus 287 Da~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~--------~~~~~~i~~el~~~l~~~~g~~----- 353 (592)
T 3mca_A 287 DSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWS--------EDRFQEIKNIVSDFLIKMVGFK----- 353 (592)
T ss_dssp EEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC--------HHHHHHHHHHHHHHHTTTSCCC-----
T ss_pred ECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccccc--------HHHHHHHHHHHHHHHHHhhCCC-----
Confidence 999864 99999999999999997 89999999997421 123456778888777 432210
Q ss_pred EEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHH
Q 001965 314 VIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPL 393 (989)
Q Consensus 314 ~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~ 393 (989)
+..-.+++.||+.|++..-. ..-...-| |+
T Consensus 354 ---~~~~~ii~iSA~~G~gI~e~----------------~~~~~~~w----~~--------------------------- 383 (592)
T 3mca_A 354 ---TSNVHFVPISAISGTNLIQK----------------DSSDLYKW----YK--------------------------- 383 (592)
T ss_dssp ---GGGEEEEEECSSSCSSSCSC----------------CCCGGGGT----CC---------------------------
T ss_pred ---ccceEEEEEecccCcccccc----------------cccccccc----cc---------------------------
Confidence 00012466788887753100 00000112 10
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCC
Q 001965 394 YKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPK 473 (989)
Q Consensus 394 ~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~ 473 (989)
...|++.|..++| |.
T Consensus 384 -------------------------------------------------g~~Lle~l~~~~p-p~--------------- 398 (592)
T 3mca_A 384 -------------------------------------------------GPTLLSALDQLVP-PE--------------- 398 (592)
T ss_dssp -------------------------------------------------SCCHHHHHHTSCC-CS---------------
T ss_pred -------------------------------------------------hHHHHHHHHhhcc-cc---------------
Confidence 0135666666666 31
Q ss_pred CcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCc
Q 001965 474 NSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARD 553 (989)
Q Consensus 474 ~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~ 553 (989)
.+.++|+.+.|..++.. ..+.++.|||.+|+|++||.|.+++.+ ...+|..|.+ .
T Consensus 399 ----------~~~~~p~r~~v~~v~~~--~~g~v~~G~v~~G~l~~Gd~v~i~p~~---------~~~~V~~i~~----~ 453 (592)
T 3mca_A 399 ----------KPYRKPLRLSIDDVYRS--PRSVTVTGRVEAGNVQVNQVLYDVSSQ---------EDAYVKNVIR----N 453 (592)
T ss_dssp ----------CTTTSCCEEEEEEEEEE--TTEEEEEEEEEESEEETTCEEEETTTT---------EEEEEEEEEC----S
T ss_pred ----------ccccccchheeeEEEec--CCeEEEEEEEeeeeEccCCEEEEccCC---------ceEEEEEEEE----c
Confidence 14467888889888887 446688999999999999999998655 4578888875 3
Q ss_pred ceecc-ccCCCCEEEE--eeccc-eeeccceeec
Q 001965 554 RIPIS-SAPPGSWVLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 554 ~~~v~-~a~AGnIv~I--~Gld~-~~~k~~Tl~~ 583 (989)
..+++ +|.||++|+| .|++. -+.+|++|+.
T Consensus 454 ~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~ 487 (592)
T 3mca_A 454 SDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSN 487 (592)
T ss_dssp SSCSCCEEETTCEEEEEESSSCGGGCCTTCEEEC
T ss_pred CccCcceecCCCEEEEEEccccccccceEEEecc
Confidence 46789 9999999985 57653 3556889987
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=9.4e-29 Score=285.10 Aligned_cols=280 Identities=21% Similarity=0.265 Sum_probs=205.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.||+++||+|||||||+++|+.... +.|.........+|....|+++|+|+......+.+ +++.++||||||
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~~~iiDtpG 75 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILA---EGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-----AARHYAHTDCPG 75 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH---HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-----SSCEEEEEECSS
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhh---hcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-----CCeEEEEEECCC
Confidence 5799999999999999999986432 11222222233478889999999999987766654 567899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHHHHHH
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTIEVIN 299 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in 299 (989)
|.+|...+.++++.+|++|+|||+.+|++.||.++|..+...++| +++|+||+|+... .+ .++.+.++++
T Consensus 76 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~------~~---~~~~~~~~~~ 146 (397)
T 1d2e_A 76 HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD------SE---MVELVELEIR 146 (397)
T ss_dssp HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC------HH---HHHHHHHHHH
T ss_pred hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCC------HH---HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 6899999999731 12 2344556777
Q ss_pred HHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCC
Q 001965 300 NHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPAS 379 (989)
Q Consensus 300 ~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~ 379 (989)
.++..... .+..-.+++.||+.|+. + .+ .-|
T Consensus 147 ~~l~~~~~--------~~~~~~~i~~SA~~g~n--------------~--~~------~~~------------------- 177 (397)
T 1d2e_A 147 ELLTEFGY--------KGEETPIIVGSALCALE--------------Q--RD------PEL------------------- 177 (397)
T ss_dssp HHHHHTTS--------CTTTSCEEECCHHHHHT--------------T--CC------TTT-------------------
T ss_pred HHHHHcCC--------CcccCcEEEeehhhccc--------------c--cC------CCc-------------------
Confidence 77765321 01111245566654431 0 00 001
Q ss_pred CcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccC-hHHHHHHHHHhcCChh
Q 001965 380 GGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGS-ASGFTDMLVKFIPSAK 458 (989)
Q Consensus 380 ~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~-~~~lld~i~~~lPsP~ 458 (989)
... ...|+++|.+++|.|.
T Consensus 178 ------------------------------------------------------------~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 178 ------------------------------------------------------------GLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp ------------------------------------------------------------THHHHHHHHHHHHHHSCCCC
T ss_pred ------------------------------------------------------------cCCcHHHHHHHHHHhCCCCC
Confidence 111 2357788888999884
Q ss_pred hhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCc
Q 001965 459 DAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDM 538 (989)
Q Consensus 459 e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~ 538 (989)
. +.++|+.+.|.+++..++. |.+++|||+||+|++||+|.+++.+. .
T Consensus 198 ~-------------------------~~~~p~~~~v~~v~~~~~~-G~v~~g~v~~G~l~~gd~v~~~~~~~-------~ 244 (397)
T 1d2e_A 198 R-------------------------DLEKPFLLPVESVYSIPGR-GTVVTGTLERGILKKGDECEFLGHSK-------N 244 (397)
T ss_dssp C-------------------------CTTSCCEEECCEEEEETTT-EEEEEEECCBSEEETTCEEEEEETTE-------E
T ss_pred C-------------------------CCCCcEEEEEEEEEEeCCc-eEEEEEEEeeceEeCCCEEEEeCCCC-------C
Confidence 2 3567999999999888765 55899999999999999999987531 1
Q ss_pred eEEEEeEEEEeecCcceeccccCCCCEEEEe--ecc-ceeeccceeec
Q 001965 539 TVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVD-ASIMKSATLCN 583 (989)
Q Consensus 539 ~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld-~~~~k~~Tl~~ 583 (989)
...+|..|... ..++++|.||++|++. |++ ..+.+|++|+.
T Consensus 245 ~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 245 IRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp EEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred eEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeC
Confidence 45688887653 3678999999999886 653 23556889886
No 17
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=3.6e-28 Score=281.00 Aligned_cols=293 Identities=24% Similarity=0.295 Sum_probs=209.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCC-CCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDP-NSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~-~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
...+||+++||+|||||||+++|+.... +.|. ........+|....|+++|+|+......+.+ +++.++||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~~~ii 80 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAA---AENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-----AKRHYSHV 80 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHH---HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-----SSCEEEEE
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhh---hcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-----CCeEEEEE
Confidence 4567899999999999999999986421 1111 1111123578889999999999887666654 56789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
|||||.+|...+.++++.+|++|+|||+.+|.+.||.+++..+...++| +++|+||+|+... .+ .++.+.
T Consensus 81 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~------~~---~~~~~~ 151 (405)
T 2c78_A 81 DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD------PE---LLDLVE 151 (405)
T ss_dssp ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC------HH---HHHHHH
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc------HH---HHHHHH
Confidence 9999999999999999999999999999999999999999999999999 8899999999731 12 133455
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
++++.++..... .+..-.+++.||+.|+...-.+ + .+
T Consensus 152 ~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~~v~~~~-----------------------------~---~~--- 188 (405)
T 2c78_A 152 MEVRDLLNQYEF--------PGDEVPVIRGSALLALEQMHRN-----------------------------P---KT--- 188 (405)
T ss_dssp HHHHHHHHHTTS--------CTTTSCEEECCHHHHHHHHHHC-----------------------------T---TC---
T ss_pred HHHHHHHHHhcc--------cccCCCEEEccHHHhhhhhccc-----------------------------c---cc---
Confidence 667776655321 0111235667777654210000 0 00
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcC
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIP 455 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lP 455 (989)
..+ . +.|......|++++.+++|
T Consensus 189 --~~~-----------------------~--------------------------------~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 189 --RRG-----------------------E--------------------------------NEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp --CTT-----------------------S--------------------------------CHHHHHHHHHHHHHHHHSC
T ss_pred --ccC-----------------------C--------------------------------CcccccHHHHHHHHHhhcC
Confidence 000 0 0011112357888999999
Q ss_pred ChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCC
Q 001965 456 SAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDE 535 (989)
Q Consensus 456 sP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~ 535 (989)
.|.. +.++|+.+.|..++..++. |.+++|||+||+|++||+|.+++.+..
T Consensus 212 ~p~~-------------------------~~~~p~~~~v~~v~~~~~~-G~v~~g~v~~G~l~~gd~v~~~~~~~~---- 261 (405)
T 2c78_A 212 TPVR-------------------------DVDKPFLMPVEDVFTITGR-GTVATGRIERGKVKVGDEVEIVGLAPE---- 261 (405)
T ss_dssp CCCC-------------------------CCSSCCEEECCEEEEETTT-EEEEEEECCBSEEETTCEEEEESSSSS----
T ss_pred CCCC-------------------------CCCCCcEEEEEEEEEcCCC-ceEEEEEEecccccCCCEEEEeCCCCC----
Confidence 8841 3467899988888887765 458999999999999999999875410
Q ss_pred CCceEEEEeEEEEeecCcceeccccCCCCEEEEe--ecc-ceeeccceeec
Q 001965 536 EDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVD-ASIMKSATLCN 583 (989)
Q Consensus 536 ~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld-~~~~k~~Tl~~ 583 (989)
....+|..|... ..++++|.|||+|++. |++ ..+.+|++|+.
T Consensus 262 --~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~ 306 (405)
T 2c78_A 262 --TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAK 306 (405)
T ss_dssp --CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEES
T ss_pred --eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEc
Confidence 146788887643 4689999999999886 653 23456889886
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.95 E-value=4.3e-28 Score=282.84 Aligned_cols=289 Identities=23% Similarity=0.370 Sum_probs=192.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED 205 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 205 (989)
...+||+++||+|||||||+++|++.++.+.+ .|.......+++|..+.|++||+|+......+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 45789999999999999999999987665532 1111111124589999999999999988776655
Q ss_pred CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC-------cccchHHHHHHHHHcCC-CEEEEEEcccccc
Q 001965 206 SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-------VMVNTERAIRHAIQERL-PIVVVVNKVDRLI 277 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg-------v~~qt~~~l~~~~~~~i-p~ilviNKiD~~~ 277 (989)
.++.++|||||||.+|..++.++++.+|++|+|||+.+| ++.||++++..+...++ |+|+|+||+|+..
T Consensus 82 ---~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 82 ---KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp ---SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred ---CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 678899999999999999999999999999999999999 89999999999998888 5899999999974
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhh
Q 001965 278 TELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFAS 357 (989)
Q Consensus 278 ~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~ 357 (989)
.+. ...+++.+.++++.++..... .|..-.++..||+.|.+. .+... .
T Consensus 159 ~~~------~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~i~iSA~~g~~v----------------~e~~~--~ 206 (435)
T 1jny_A 159 PPY------DEKRYKEIVDQVSKFMRSYGF--------NTNKVRFVPVVAPSGDNI----------------THKSE--N 206 (435)
T ss_dssp STT------CHHHHHHHHHHHHHHHHHTTC--------CCTTCEEEECBTTTTBTT----------------TBCCS--S
T ss_pred ccc------cHHHHHHHHHHHHHHHHHcCC--------CcCCceEEEeecccCccc----------------ccccc--c
Confidence 210 012345677888888765321 011112455677765431 00000 0
Q ss_pred hhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhc
Q 001965 358 RLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACS 437 (989)
Q Consensus 358 ~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~ 437 (989)
.-| |
T Consensus 207 ~~~----~------------------------------------------------------------------------ 210 (435)
T 1jny_A 207 MKW----Y------------------------------------------------------------------------ 210 (435)
T ss_dssp CTT----C------------------------------------------------------------------------
T ss_pred ccc----c------------------------------------------------------------------------
Confidence 001 0
Q ss_pred ccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEecee
Q 001965 438 SVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGII 517 (989)
Q Consensus 438 ~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL 517 (989)
.. ..|++++.. +|.|.. +.++|+.+.|..++..+.. +.+++|||+||+|
T Consensus 211 ---~g-~~Ll~~l~~-~~~p~~-------------------------~~~~~~~~~v~~v~~~~~~-G~v~~g~v~~G~l 259 (435)
T 1jny_A 211 ---NG-PTLEEYLDQ-LELPPK-------------------------PVDKPLRIPIQDVYSISGV-GTVPVGRVESGVL 259 (435)
T ss_dssp ---CS-CCHHHHHTT-CCCCCC-------------------------GGGSCCBEEEEEEEEETTT-EEEEEEECCBSCE
T ss_pred ---cc-hhHHHHHhc-cCCCCC-------------------------CCCCCeEEEEEEEEEeCCC-cEEEEEEEecCeE
Confidence 00 135666544 454531 1123444444444444544 5699999999999
Q ss_pred cCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe--ecc-ceeeccceeec
Q 001965 518 QTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVD-ASIMKSATLCN 583 (989)
Q Consensus 518 ~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld-~~~~k~~Tl~~ 583 (989)
++||.|.+.+.+ ...+|.+|... ..++++|.||++|+|. |++ .-+.+|++|+.
T Consensus 260 ~~gd~v~~~p~~---------~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~ 315 (435)
T 1jny_A 260 KVGDKIVFMPAG---------KVGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGH 315 (435)
T ss_dssp ETTCEEEEETTT---------EEEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGCCTTCEEEC
T ss_pred EcCCEEEECCce---------eEEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHcCCccEecC
Confidence 999999998654 56789998653 5789999999999984 543 22445889987
No 19
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.95 E-value=1.1e-28 Score=296.36 Aligned_cols=329 Identities=17% Similarity=0.204 Sum_probs=211.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec-------------
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED------------- 205 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------------- 205 (989)
+.++|+|+||+|||||||+++|+..+.... ..+|+|...+...+.+..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~-------------------e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~ 64 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR-------------------EAGGITQHIGATEIPMDVIEGICGDFLKKFS 64 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc-------------------cCCceecccCeEEEeechhhhhccccccccc
Confidence 456899999999999999999986432110 012333322222222110
Q ss_pred CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccccccc-----
Q 001965 206 SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITEL----- 280 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el----- 280 (989)
.+.+...++|||||||.+|..++.++++.+|+||+|||+.+|++.||.++|+++...++|+++|+||+|+....-
T Consensus 65 v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp GGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTC
T ss_pred cccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCC
Confidence 001223599999999999999999999999999999999999999999999999999999999999999973110
Q ss_pred ------CCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCC--ceeeccccccceeehhhHHHHhhhccCcccch
Q 001965 281 ------KLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAG--NVCFASASAGWSFTLHSFAKLYVKLHGVPFDA 352 (989)
Q Consensus 281 ------~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~g--nV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~ 352 (989)
...+.+....+...+.++...+.................+ .++++||+.|+
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~--------------------- 203 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE--------------------- 203 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT---------------------
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC---------------------
Confidence 0011222222333333333333221000000000000000 01122222111
Q ss_pred hhhhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHH
Q 001965 353 EKFASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLL 432 (989)
Q Consensus 353 ~~~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll 432 (989)
T Consensus 204 -------------------------------------------------------------------------------- 203 (594)
T 1g7s_A 204 -------------------------------------------------------------------------------- 203 (594)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEE
Q 001965 433 RLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRV 512 (989)
Q Consensus 433 ~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV 512 (989)
+...|+++|+.++|+|... -..+++++|+.++|+|++.+++. |.++++||
T Consensus 204 ---------GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~-G~v~~~rV 253 (594)
T 1g7s_A 204 ---------GIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGL-GMTIDAVI 253 (594)
T ss_dssp ---------THHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTE-EEEEEEEE
T ss_pred ---------CchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCc-EEEEEEEE
Confidence 1234566666666655321 01346788999999999999876 45999999
Q ss_pred EeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEee--------cCcceeccccC--CCCEEEEeeccceeeccceee
Q 001965 513 YSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQ--------ARDRIPISSAP--PGSWVLIEGVDASIMKSATLC 582 (989)
Q Consensus 513 ~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~--------gr~~~~v~~a~--AGnIv~I~Gld~~~~k~~Tl~ 582 (989)
+||+|++||.|.+.+.+- ....+|.+|+.+. |....++++|. ||++|++.||+...+ |+||+
T Consensus 254 ~~G~Lk~Gd~v~~~~~~~-------~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~-Gd~l~ 325 (594)
T 1g7s_A 254 YDGILRKDDTIAMMTSKD-------VISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMA-GSPLR 325 (594)
T ss_dssp EESEEETTCEEEEEBSSS-------EEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCT-TCEEE
T ss_pred eeCEEeeCCEEEECCCCC-------ceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCCCC-CCEEE
Confidence 999999999999875431 1245899999873 56678899998 999999999998866 79998
Q ss_pred cccCCCc-----cccccccccCCcceEEEEeeeCCCCChhHHHHHHHHH
Q 001965 583 NLEYDED-----VYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKI 626 (989)
Q Consensus 583 ~~~~~~~-----~~~~~~~~~~~~Pv~~vaIeP~~~~dl~kL~~gL~kL 626 (989)
....... ...+..+. ...+.+.+.|.+.....+..|.++|+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 326 VVTDPEKVREEILSEIEDIK-IDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp ECSSHHHHHHHHHHHHHTTS-CBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHHHHHHHhcc-cccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 6421100 00122332 2355677888888888888999998887
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.95 E-value=1.8e-27 Score=279.71 Aligned_cols=299 Identities=18% Similarity=0.239 Sum_probs=177.7
Q ss_pred HHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEE
Q 001965 127 TQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISI 194 (989)
Q Consensus 127 ~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti 194 (989)
.+++..+.. ...+||+++||+|||||||+++|++.++.+.. .|.......+.+|..+.|++||+|+
T Consensus 32 ~~~~~~~~~--k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi 109 (467)
T 1r5b_A 32 QELLKDMYG--KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTV 109 (467)
T ss_dssp STTHHHHSC--CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-------------------------
T ss_pred HHHHHhhcC--CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceE
Confidence 344444432 45689999999999999999999988876531 1222222245689999999999999
Q ss_pred EeeeeEEEeecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcc-------cchHHHHHHHHHcCCC-E
Q 001965 195 KAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVM-------VNTERAIRHAIQERLP-I 266 (989)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~-------~qt~~~l~~~~~~~ip-~ 266 (989)
......+.+ +++.++|||||||.+|...+.++++.+|++|||||+.+|++ .||.+++..+...++| +
T Consensus 110 ~~~~~~~~~-----~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 110 EVGRAYFET-----EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp ---CCEEEC-----SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred EeeeEEEec-----CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 988777766 56889999999999999999999999999999999999974 7999999999999998 9
Q ss_pred EEEEEcccccccccCCCchHHHHHHHHHHHHHHHHhhhh-cccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhc
Q 001965 267 VVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAA-STTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKL 345 (989)
Q Consensus 267 ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~-~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~ 345 (989)
|+|+||+|+...+. .. .+++.+.++++.++... ......... ++..||+.|++..
T Consensus 185 ivviNK~Dl~~~~~---~~---~~~~~i~~e~~~~l~~~~g~~~~~~~~-------~i~vSA~~g~~i~----------- 240 (467)
T 1r5b_A 185 VVVINKMDEPSVQW---SE---ERYKECVDKLSMFLRRVAGYNSKTDVK-------YMPVSAYTGQNVK----------- 240 (467)
T ss_dssp EEEEECTTSTTCSS---CH---HHHHHHHHHHHHHHHHHHCCCHHHHEE-------EEECBTTTTBTTS-----------
T ss_pred EEEEECccCCCccc---cH---HHHHHHHHHHHHHHHHhcCCCccCCce-------EEecccccccccc-----------
Confidence 99999999964221 01 23456777777777653 110000111 3456777665310
Q ss_pred cCcccchhhhhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHH
Q 001965 346 HGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYR 425 (989)
Q Consensus 346 ~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~ 425 (989)
++.+....-|
T Consensus 241 -----~l~~~~~~~w----------------------------------------------------------------- 250 (467)
T 1r5b_A 241 -----DRVDSSVCPW----------------------------------------------------------------- 250 (467)
T ss_dssp -----SCCCTTTCSS-----------------------------------------------------------------
T ss_pred -----cccccccCcc-----------------------------------------------------------------
Confidence 0000000011
Q ss_pred hcchHHHHhhhcccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCc
Q 001965 426 LNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSV 505 (989)
Q Consensus 426 ~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~ 505 (989)
|-|. .|++.+ +.+|.|.. +.++|+.+.|...+.. . +
T Consensus 251 -------------~~g~--~L~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~~~--~-G 286 (467)
T 1r5b_A 251 -------------YQGP--SLLEYL-DSMTHLER-------------------------KVNAPFIMPIASKYKD--L-G 286 (467)
T ss_dssp -------------CCSC--CHHHHH-HHCCCCHH-------------------------HHTSCCEEECCEEEES--S-S
T ss_pred -------------ccch--hHHHHH-HhCCCCcC-------------------------CCCCCcEEEEEEEEeC--C-C
Confidence 1111 133333 34666642 2346777777776653 3 4
Q ss_pred eeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEE--ee-ccceeeccceee
Q 001965 506 FDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI--EG-VDASIMKSATLC 582 (989)
Q Consensus 506 ~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I--~G-ld~~~~k~~Tl~ 582 (989)
.++.|||.+|+|++||.|.+++.+ ...+|..|+.. ...++++|.||+.|+| .| .+ -+.+|++|+
T Consensus 287 ~v~~G~v~~G~l~~gd~v~~~p~~---------~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~-~i~rG~vl~ 353 (467)
T 1r5b_A 287 TILEGKIEAGSIKKNSNVLVMPIN---------QTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDS-DVQTGYVLT 353 (467)
T ss_dssp EEEEEECCBSEEETTEEEEEETTT---------EEEEEEEEECT---TCCEESEEETTCEEEEEEESCCT-TCCTTCEEE
T ss_pred eEEEEEEeeeEEeeCCEEEEccCC---------eeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHh-hCCceEEEe
Confidence 599999999999999999998654 45678887642 2568999999999998 56 22 345688888
Q ss_pred c
Q 001965 583 N 583 (989)
Q Consensus 583 ~ 583 (989)
.
T Consensus 354 ~ 354 (467)
T 1r5b_A 354 S 354 (467)
T ss_dssp C
T ss_pred C
Confidence 6
No 21
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=9e-27 Score=275.18 Aligned_cols=298 Identities=17% Similarity=0.221 Sum_probs=194.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED 205 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 205 (989)
....||+++||+|+|||||+++|++.++.+.. .|.......+++|....|+++|+|+......+.+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 44568999999999999999999988776542 2333333456789999999999999988877765
Q ss_pred CCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC-------cccchHHHHHHHHHcCC-CEEEEEEcccccc
Q 001965 206 SNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-------VMVNTERAIRHAIQERL-PIVVVVNKVDRLI 277 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg-------v~~qt~~~l~~~~~~~i-p~ilviNKiD~~~ 277 (989)
+++.++|||||||.+|...+..+++.+|++|+|||+.+| +..||.+++..+...++ |+|+|+||+|+..
T Consensus 109 ---~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 109 ---HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp ---SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred ---CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 678899999999999999999999999999999999998 67899999999988886 5999999999974
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhh-hh
Q 001965 278 TELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEK-FA 356 (989)
Q Consensus 278 ~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~-~~ 356 (989)
.+ ..+++.+.+++..++....... ... .++..||+.|++.. ++.. ..
T Consensus 186 ~~--------~~~~~~i~~~~~~~l~~~g~~~-~~~-------~~i~iSA~~g~gi~----------------el~~~~~ 233 (483)
T 3p26_A 186 WS--------QQRFEEIKSKLLPYLVDIGFFE-DNI-------NWVPISGFSGEGVY----------------KIEYTDE 233 (483)
T ss_dssp TC--------HHHHHHHHHHHHHHHHHHTCCG-GGE-------EEEECCSSSCTTSS----------------SSCCCHH
T ss_pred ch--------HHHHHHHHHHHHHHHHHcCCCc-ccc-------eEEEEeeecCCCcc----------------ccCcccc
Confidence 21 1224556677777665432100 011 24567888776421 0000 00
Q ss_pred hhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhh
Q 001965 357 SRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLAC 436 (989)
Q Consensus 357 ~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~ 436 (989)
..-| |.. +.|
T Consensus 234 ~~~w----y~g--------------------------------------~~L---------------------------- 243 (483)
T 3p26_A 234 VRQW----YNG--------------------------------------PNL---------------------------- 243 (483)
T ss_dssp HHHH----CCS--------------------------------------CCH----------------------------
T ss_pred cccc----cCC--------------------------------------CCH----------------------------
Confidence 0112 100 011
Q ss_pred cccccChHHHHHHHHHhcCC--hhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCC--CCceeEEEEE
Q 001965 437 SSVFGSASGFTDMLVKFIPS--AKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSD--CSVFDAFGRV 512 (989)
Q Consensus 437 ~~~~g~~~~lld~i~~~lPs--P~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~--~~~~~a~~RV 512 (989)
..+|+.+...+|. |. .+.++|+.+.|..++.... +.+.++.|||
T Consensus 244 -------~~~L~~i~~~~~~~~p~-------------------------~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v 291 (483)
T 3p26_A 244 -------MSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSKKTSNDLALVSGKL 291 (483)
T ss_dssp -------HHHHHHHHHHHHHHHTT-------------------------CCSSSCCEEEEEEEEC---CCSCCEEEEEEE
T ss_pred -------HHHHHHHHhhccccccc-------------------------ccCCCceEEEEEEEEccCCcCCCceEEEEEE
Confidence 1234445444443 21 1346788888888877653 3356899999
Q ss_pred EeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEee----cCcceeccccCCCCEEEE--eecc-ceeeccceeec
Q 001965 513 YSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQ----ARDRIPISSAPPGSWVLI--EGVD-ASIMKSATLCN 583 (989)
Q Consensus 513 ~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~----gr~~~~v~~a~AGnIv~I--~Gld-~~~~k~~Tl~~ 583 (989)
.+|+|++||.|.+++.+ ...+|..|.... |..+.++++|.||+.|+| .|++ .-+.+|++|++
T Consensus 292 ~~G~l~~gd~v~~~p~~---------~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~ 360 (483)
T 3p26_A 292 ESGSIQPGESLTIYPSE---------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAAS 360 (483)
T ss_dssp EESEECTTCEEEEETTT---------EEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGGCCTTCEEEC
T ss_pred ecceEccCCEEEEeCCC---------CeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccccCCceEEEEc
Confidence 99999999999998755 467899988763 455789999999999998 2332 23456899987
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.94 E-value=9.5e-27 Score=289.38 Aligned_cols=283 Identities=22% Similarity=0.311 Sum_probs=191.4
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.....||+++||+|||||||+++|+.... +.|.........+|..+.|+++|+|+....+.+.. +++.++||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-----~~~kI~II 364 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-----PTRHYAHV 364 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC---------------------CCSCEEEEC-----SSCEEEEE
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhc---cccccccccccccccccccccCceeEEEEEEEEcC-----CCEEEEEE
Confidence 34568999999999999999999986421 11111111123568888999999999987766654 66889999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
|||||.+|...+.++++.+|++|||||+.+|++.||.+++..+...++| +|+|+||+|+... .+ .++.+.
T Consensus 365 DTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d------~e---~le~i~ 435 (1289)
T 3avx_A 365 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD------EE---LLELVE 435 (1289)
T ss_dssp ECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC------HH---HHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc------hh---hHHHHH
Confidence 9999999999999999999999999999999999999999999989999 7899999999731 12 234456
Q ss_pred HHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeC
Q 001965 296 EVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKK 375 (989)
Q Consensus 296 ~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~ 375 (989)
+++..++..... .+..-.++.+||+.||. +. .-|
T Consensus 436 eEi~elLk~~G~--------~~~~vp~IpvSAktG~n--------------g~---------~~w--------------- 469 (1289)
T 3avx_A 436 MEVRELLSQYDF--------PGDDTPIVRGSALKALE--------------GD---------AEW--------------- 469 (1289)
T ss_dssp HHHHHHHHHTTS--------CTTTCCEEECCSTTTTT--------------CC---------HHH---------------
T ss_pred HHHHHHHHhccc--------cccceeEEEEEeccCCC--------------CC---------ccc---------------
Confidence 677777765321 01111345667665531 00 001
Q ss_pred CCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcC
Q 001965 376 PPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIP 455 (989)
Q Consensus 376 ~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lP 455 (989)
| .+...|++.|.+++|
T Consensus 470 ------------------~----------------------------------------------eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 470 ------------------E----------------------------------------------AKILELAGFLDSYIP 485 (1289)
T ss_dssp ------------------H----------------------------------------------HHHHHHHHHHHHTSC
T ss_pred ------------------c----------------------------------------------ccchhhHhHHhhhcC
Confidence 0 011246778888898
Q ss_pred ChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCC
Q 001965 456 SAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDE 535 (989)
Q Consensus 456 sP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~ 535 (989)
.|.. +.++|+.+.|..++..++. |.+++|||++|+|++||+|.+.+.+.
T Consensus 486 ~P~r-------------------------~~d~Pfr~pId~Vf~i~G~-GtVvtGrV~sGtLkvGD~V~I~ps~~----- 534 (1289)
T 3avx_A 486 EPER-------------------------AIDKPFLLPIEDVFSISGR-GTVVTGRVERGIIKVGEEVEIVGIKE----- 534 (1289)
T ss_dssp CCCC-------------------------GGGSCCEEECCEEEEETTT-EEEEEEECCBSEEETTCEEEEESSSS-----
T ss_pred CCcc-------------------------ccccceeeeccccccccCC-cEEEEEEEeccEEecCCEEEEecCCC-----
Confidence 8742 2357888878877777765 55999999999999999999987541
Q ss_pred CCceEEEEeEEEEeecCcceeccccCCCCEEEEe--ecc-ceeeccceeec
Q 001965 536 EDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVD-ASIMKSATLCN 583 (989)
Q Consensus 536 ~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld-~~~~k~~Tl~~ 583 (989)
....+|..|.+. ..++++|.||++|++. |++ ..+.+|++|+.
T Consensus 535 --~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~ 579 (1289)
T 3avx_A 535 --TQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAK 579 (1289)
T ss_dssp --CEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred --ceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEEec
Confidence 145688888543 4678999999999875 653 23456888886
No 23
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.94 E-value=1.3e-26 Score=271.74 Aligned_cols=300 Identities=21% Similarity=0.306 Sum_probs=209.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCccc------------ccCCCCCCcceeccCccceeeeeEEEEeeeeEEEee
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMS------------TFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLE 204 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~------------~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 204 (989)
.....||+++||+|||||||+++|++.++.+. +.|........++|..+.|+++|+|+......+.+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~- 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-
Confidence 34567899999999999999999998765443 12333223334578889999999999888776655
Q ss_pred cCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCccc-------chHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 205 DSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMV-------NTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 205 ~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~-------qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
.++.++|||||||.+|...+.++++.+|++|+|||+.+|+.. ||.+++..+...++| +|+|+||+|+.
T Consensus 83 ----~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 ----PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp ----SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred ----CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 678899999999999999999999999999999999999866 999999999888997 89999999997
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhh
Q 001965 277 ITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFA 356 (989)
Q Consensus 277 ~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~ 356 (989)
..+ . .+++.+.++++.++...... |..-.++..||+.|++.. +.. .
T Consensus 159 ~~~-----~---~~~~~i~~~~~~~l~~~g~~--------~~~~~~i~vSA~~g~nv~----------------~~~--~ 204 (458)
T 1f60_A 159 KWD-----E---SRFQEIVKETSNFIKKVGYN--------PKTVPFVPISGWNGDNMI----------------EAT--T 204 (458)
T ss_dssp TTC-----H---HHHHHHHHHHHHHHHHHTCC--------GGGCCEEECCTTTCBTTT----------------BCC--S
T ss_pred cCC-----H---HHHHHHHHHHHHHHHHcCCC--------ccCceEEEeecccCcCcc----------------ccc--c
Confidence 311 1 22455777787777653210 101125667888776421 000 0
Q ss_pred hhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhh
Q 001965 357 SRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLAC 436 (989)
Q Consensus 357 ~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~ 436 (989)
..-| |.. +........ +
T Consensus 205 ~~~~----~~~----~~~~~~tg~--------------------~----------------------------------- 221 (458)
T 1f60_A 205 NAPW----YKG----WEKETKAGV--------------------V----------------------------------- 221 (458)
T ss_dssp SCTT----CCC----EEEECSSSE--------------------E-----------------------------------
T ss_pred cCch----hhc----ccccccccc--------------------c-----------------------------------
Confidence 0112 110 000000000 0
Q ss_pred cccccChHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEece
Q 001965 437 SSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGI 516 (989)
Q Consensus 437 ~~~~g~~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGt 516 (989)
....|++++- .+|.|.. +.++|+.+.|..++..+.. +.++.|||.+|+
T Consensus 222 -----~~~~Ll~~l~-~~~~p~~-------------------------~~~~p~r~~i~~v~~~~g~-G~v~~G~v~~G~ 269 (458)
T 1f60_A 222 -----KGKTLLEAID-AIEQPSR-------------------------PTDKPLRLPLQDVYKIGGI-GTVPVGRVETGV 269 (458)
T ss_dssp -----EESSHHHHHH-TSCCCCC-------------------------CTTSCCEEEEEEEEEETTT-EEEEEEECCBSC
T ss_pred -----chHHHHHHhh-ccCCCcc-------------------------cCCCCcEEEEEEEEEeCCC-cEEEEEEEeCCe
Confidence 0013555533 3555521 3467888888888887765 569999999999
Q ss_pred ecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe--ecc-ceeeccceeec
Q 001965 517 IQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE--GVD-ASIMKSATLCN 583 (989)
Q Consensus 517 L~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~--Gld-~~~~k~~Tl~~ 583 (989)
++.||+|.+++.+ ...+|.++... ..++++|.||+.|+|. |++ .-+.+|++|+.
T Consensus 270 l~~gd~v~~~p~~---------~~~~V~~i~~~----~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~ 326 (458)
T 1f60_A 270 IKPGMVVTFAPAG---------VTTEVKSVEMH----HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGD 326 (458)
T ss_dssp BCTTCEEEEETTT---------EEEEEEEEEET----TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEE
T ss_pred EcCCCEEEECCCC---------ceEEEeEEEEC----CeEEEEEcCCCEEEEEEcCCcccccCceeEEec
Confidence 9999999998654 46788888753 4578999999999884 663 33556888886
No 24
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=7.8e-26 Score=257.84 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=104.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
++||+++||+|||||||+++|+ +||+|+..+...+.+ +++.++|||||
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~---------------------------~~giTi~~~~~~~~~-----~~~~i~iiDtP 68 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG---------------------------KKGTSSDITMYNNDK-----EGRNMVFVDAH 68 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS---------------------------EEEEESSSEEEEECS-----SSSEEEEEECT
T ss_pred CCEEEEECCCCCCHHHHHHHHH---------------------------hCCEEEEeeEEEEec-----CCeEEEEEECC
Confidence 3499999999999999999984 578888777766655 56789999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEE-cccccccccCCCchHHHHHHHHHHHH
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVN-KVDRLITELKLPPKDAYHKLRHTIEV 297 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviN-KiD~~~~el~l~p~~~~~~l~~ii~~ 297 (989)
||.+|..++.++++.+|+||+||| .+|++.||++++..+...++|. |+++| |+|+ .. + .++.+.++
T Consensus 69 Gh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-------~---~~~~~~~~ 136 (370)
T 2elf_A 69 SYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-------H---AIDELKAK 136 (370)
T ss_dssp TTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-------H---HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-------H---HHHHHHHH
Confidence 999999999999999999999999 9999999999999999999998 99999 9998 42 1 13446677
Q ss_pred HHHHhhh
Q 001965 298 INNHISA 304 (989)
Q Consensus 298 in~~l~~ 304 (989)
++.++..
T Consensus 137 i~~~l~~ 143 (370)
T 2elf_A 137 LKVITSG 143 (370)
T ss_dssp HHHHTTT
T ss_pred HHHHHHh
Confidence 7777764
No 25
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-26 Score=279.21 Aligned_cols=304 Identities=17% Similarity=0.221 Sum_probs=213.3
Q ss_pred hhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccc------------cCCCCCCcceeccCccceeeeeEEEEeeee
Q 001965 132 GLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMST------------FDPNSEKHTRYTDTRIDEQERRISIKAVPM 199 (989)
Q Consensus 132 ~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~------------~g~~~~~~~~~~D~~~~E~~rgiti~~~~~ 199 (989)
..+.......||+|+||+|||||||+++|++.++.+.. .|.......+++|....|+++|+|+.....
T Consensus 159 ~~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~ 238 (611)
T 3izq_1 159 AFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS 238 (611)
T ss_dssp --CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCC
T ss_pred HHHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeE
Confidence 33333455678999999999999999999988766542 333334445678889999999999988887
Q ss_pred EEEeecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCC-------cccchHHHHHHHHHcCCC-EEEEEE
Q 001965 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-------VMVNTERAIRHAIQERLP-IVVVVN 271 (989)
Q Consensus 200 ~~~~~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~eg-------v~~qt~~~l~~~~~~~ip-~ilviN 271 (989)
.+.+ .++.++|||||||.+|...+..+++.+|++|+|||+.+| +..||.+++..+...++| +|||+|
T Consensus 239 ~~~~-----~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 239 HFST-----HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp EEEC-----SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred EEec-----CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 7765 678899999999999999999999999999999999998 578999999999988886 899999
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccc
Q 001965 272 KVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFD 351 (989)
Q Consensus 272 KiD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~ 351 (989)
|+|+.... ..+++.+.+++..++...... +..-.++..||+.|.+.. +
T Consensus 314 KiDl~~~~--------~~~~~ei~~~l~~~l~~~g~~--------~~~~~~i~vSA~tG~gI~----------------e 361 (611)
T 3izq_1 314 KMDNVDWS--------QQRFEEIKSKLLPYLVDIGFF--------EDNINWVPISGFSGEGVY----------------K 361 (611)
T ss_dssp CTTTTTTC--------HHHHHHHHHHHHHHHHHHTCC--------GGGCEEEECCTTTCTTTS----------------S
T ss_pred cccccchh--------HHHHHHHHHHHHHHHHhhccc--------ccCccEEeeecccCCCcc----------------c
Confidence 99987421 122455667777766543210 111124567888775421 0
Q ss_pred hhh-hhhhhcccccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchH
Q 001965 352 AEK-FASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRP 430 (989)
Q Consensus 352 ~~~-~~~~lwgd~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ 430 (989)
+.. ....-| |.. ..|.+
T Consensus 362 l~~~~~~~~W----y~g--------------------------------------~~L~~-------------------- 379 (611)
T 3izq_1 362 IEYTDEVRQW----YNG--------------------------------------PNLMS-------------------- 379 (611)
T ss_dssp CTTSCTTCCS----CCS--------------------------------------CCHHH--------------------
T ss_pred cCcccccccc----ccC--------------------------------------CcHHH--------------------
Confidence 000 000112 110 01111
Q ss_pred HHHhhhcccccChHHHHHHHHHhcCC--hhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCC--CCce
Q 001965 431 LLRLACSSVFGSASGFTDMLVKFIPS--AKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSD--CSVF 506 (989)
Q Consensus 431 ll~~v~~~~~g~~~~lld~i~~~lPs--P~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~--~~~~ 506 (989)
+|+.+...+|. |. .+.++|+.+.|..++..+. +.+.
T Consensus 380 ---------------~L~~l~~~~p~~~p~-------------------------~~~~~p~r~~V~~v~~~~~~~g~g~ 419 (611)
T 3izq_1 380 ---------------TLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSKKTSNDLA 419 (611)
T ss_dssp ---------------HHTTSCCCCCCSSSC-------------------------CSCCSCCEEECCEEECCSSSCSSSS
T ss_pred ---------------HHHHHhhcccccCcc-------------------------cccccchhhheeeeeccCccCCCee
Confidence 22223333333 21 1356788888888877653 3356
Q ss_pred eEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEe----ecCcceeccccCCCCEEEE--eecc-ceeeccc
Q 001965 507 DAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIY----QARDRIPISSAPPGSWVLI--EGVD-ASIMKSA 579 (989)
Q Consensus 507 ~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~----~gr~~~~v~~a~AGnIv~I--~Gld-~~~~k~~ 579 (989)
++.|||.||+|++||.|.+++.+ ...+|..|... +|..+.++++|.||+.|+| .|++ .-+.+|+
T Consensus 420 v~~G~V~~G~lk~Gd~v~~~p~~---------~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGd 490 (611)
T 3izq_1 420 LVSGKLESGSIQPGESLTIYPSE---------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGD 490 (611)
T ss_dssp EEEEEEEESEECTTCEEEETTTT---------EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTC
T ss_pred EEEEEEEeceeccCCEEEEecCC---------ceEEEEEEEEcccccccccccccceecCCCcceEEeeeccHhhCcceE
Confidence 89999999999999999998755 46789998876 3667889999999999998 4442 2345688
Q ss_pred eeec
Q 001965 580 TLCN 583 (989)
Q Consensus 580 Tl~~ 583 (989)
+|++
T Consensus 491 vl~~ 494 (611)
T 3izq_1 491 LAAS 494 (611)
T ss_dssp EEBC
T ss_pred EccC
Confidence 9886
No 26
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=8.4e-26 Score=263.43 Aligned_cols=287 Identities=19% Similarity=0.222 Sum_probs=192.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCccccc--CC-----CCCC-------cceeccCccceeeeeEEEEeeeeEEEe
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTF--DP-----NSEK-------HTRYTDTRIDEQERRISIKAVPMSLVL 203 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~--g~-----~~~~-------~~~~~D~~~~E~~rgiti~~~~~~~~~ 203 (989)
...+||+++||+|||||||+++|++.++.+... +. ...+ ...++|..+.|++||+|++.+...+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346789999999999999999999887654320 00 0011 123478889999999999877666655
Q ss_pred ecCCCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccccccccCC
Q 001965 204 EDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRLITELKL 282 (989)
Q Consensus 204 ~~~~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~~~el~l 282 (989)
+++.++|||||||.+|...+.++++.+|++|+|||+.+|++.||.+++..+...++| +|+|+||+|+...+
T Consensus 102 -----~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~--- 173 (434)
T 1zun_B 102 -----AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD--- 173 (434)
T ss_dssp -----SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC---
T ss_pred -----CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc---
Confidence 567899999999999999999999999999999999999999999999999888885 89999999997421
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhccc
Q 001965 283 PPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGD 362 (989)
Q Consensus 283 ~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd 362 (989)
.+ +++.+.++++.++...... .... .++..||+.|++. +.. +...-|
T Consensus 174 --~~---~~~~i~~~~~~~~~~~g~~-~~~~-------~~i~vSA~~g~gi-----------------~~~-~~~~~w-- 220 (434)
T 1zun_B 174 --ER---VFESIKADYLKFAEGIAFK-PTTM-------AFVPMSALKGDNV-----------------VNK-SERSPW-- 220 (434)
T ss_dssp --HH---HHHHHHHHHHHHHHTTTCC-CSEE-------EEEECCTTTCTTT-----------------SSC-CTTCTT--
T ss_pred --HH---HHHHHHHHHHHHHHHhCCC-ccCc-------eEEEEeccCCCCc-----------------ccc-cccCcc--
Confidence 11 2344667777766543200 0001 2456788777532 100 000112
Q ss_pred ccccCCCCeEEeCCCCCCcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccC
Q 001965 363 MYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGS 442 (989)
Q Consensus 363 ~y~~~~~~~~~~~~~~~~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~ 442 (989)
|+. +
T Consensus 221 --~~g--------------------------------------~------------------------------------ 224 (434)
T 1zun_B 221 --YAG--------------------------------------Q------------------------------------ 224 (434)
T ss_dssp --CCS--------------------------------------C------------------------------------
T ss_pred --ccC--------------------------------------c------------------------------------
Confidence 100 0
Q ss_pred hHHHHHHHHHhcCChhhhhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCE
Q 001965 443 ASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQS 522 (989)
Q Consensus 443 ~~~lld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~ 522 (989)
.|++ +++.+|.|.. +.++|+.+.|..++..... +....|||.+|+|++||+
T Consensus 225 --~L~~-~l~~i~~~~~-------------------------~~~~~~~~~v~~v~~~~~~-~~g~~G~v~~G~l~~gd~ 275 (434)
T 1zun_B 225 --SLME-ILETVEIASD-------------------------RNYTDLRFPVQYVNRPNLN-FRGFAGTLASGIVHKGDE 275 (434)
T ss_dssp --CTTH-HHHHSCCTTC-------------------------CCSSSCEEECCEEECSSSS-CCEEEEECCBSCEETTCE
T ss_pred --hHHH-HHhcCCCccc-------------------------CCCCCcEEEEEEEeccCCC-ceEEEEEEecceEeCCCE
Confidence 0111 2223455421 2356777766655543332 235679999999999999
Q ss_pred EEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEeeccc-eeeccceeec
Q 001965 523 VRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDA-SIMKSATLCN 583 (989)
Q Consensus 523 V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~-~~~k~~Tl~~ 583 (989)
|.+.+.+ ...+|..|.... .++++|.||+.|++.+.+. .+.+|++|+.
T Consensus 276 v~~~p~~---------~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~ 324 (434)
T 1zun_B 276 IVVLPSG---------KSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVH 324 (434)
T ss_dssp EEETTTC---------CEEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEE
T ss_pred EEEecCC---------eEEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEEC
Confidence 9998654 357888887653 4799999999999987542 3456888887
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.94 E-value=3.3e-25 Score=256.65 Aligned_cols=125 Identities=27% Similarity=0.368 Sum_probs=102.1
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC----------
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS---------- 206 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~---------- 206 (989)
...++||+++||+|||||||+++|... ..|....|++||+|+..+...+.+...
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~----------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~ 70 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV----------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSP 70 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC----------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC----------------ccccChhhhcCCcEEEEeeeeeecccccccccccccc
Confidence 355789999999999999999999521 135567788899999877665554321
Q ss_pred --C--CC----ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcCC-CEEEEEEccccc
Q 001965 207 --N--SK----SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQERL-PIVVVVNKVDRL 276 (989)
Q Consensus 207 --~--~~----~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~i-p~ilviNKiD~~ 276 (989)
. ++ .+.++|||||||.+|..++.++++.+|+||||||+.+|+ +.||.+++..+...++ |+++|+||+|+.
T Consensus 71 ~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp BCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 0 11 278999999999999999999999999999999999998 9999999998887776 789999999997
Q ss_pred c
Q 001965 277 I 277 (989)
Q Consensus 277 ~ 277 (989)
.
T Consensus 151 ~ 151 (410)
T 1kk1_A 151 D 151 (410)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=7.3e-24 Score=245.17 Aligned_cols=124 Identities=28% Similarity=0.381 Sum_probs=96.1
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC-----------
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS----------- 206 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~----------- 206 (989)
+..+||+++||+|||||||+++|... ..|....|++||+|+......+.+...
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~----------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 69 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV----------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPR 69 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC----------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC----------------ccccCcccccCCcEEEeccccccccccccccccccccc
Confidence 45679999999999999999999521 235567788999999776554443211
Q ss_pred -C--CC----ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcCC-CEEEEEEcccccc
Q 001965 207 -N--SK----SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQERL-PIVVVVNKVDRLI 277 (989)
Q Consensus 207 -~--~~----~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~i-p~ilviNKiD~~~ 277 (989)
. ++ .+.++|||||||.+|...+.++++.+|++|||||+.+|+ +.||.+++..+...++ |+++|+||+|+..
T Consensus 70 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 70 CPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp CTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred ccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 1 11 278999999999999999999999999999999999998 8999999988877776 7999999999975
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=7.4e-25 Score=258.24 Aligned_cols=139 Identities=27% Similarity=0.422 Sum_probs=102.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..||+++||+|||||||+++|.... ....+|....|+++|+|+......+.+ .++.++|+||
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~------------~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~i~iiDt 80 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA------------STSAHDKLPESQKRGITIDIGFSAFKL-----ENYRITLVDA 80 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------CCCEEEE-----TTEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC------------cccccccccccccCccEEecceEEEEE-----CCEEEEEEEC
Confidence 35689999999999999999996322 123567788899999999988777776 5688999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHH
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVI 298 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~i 298 (989)
|||.+|...+.++++.+|++|+|||+.+|++.||.+++..+...++|.++|+||+|+... + .++.+.+++
T Consensus 81 PGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~-------~---~~~~~~~~l 150 (482)
T 1wb1_A 81 PGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT-------E---EIKRTEMIM 150 (482)
T ss_dssp SSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH-------H---HHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc-------h---hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999731 2 234566777
Q ss_pred HHHhhh
Q 001965 299 NNHISA 304 (989)
Q Consensus 299 n~~l~~ 304 (989)
+.++..
T Consensus 151 ~~~l~~ 156 (482)
T 1wb1_A 151 KSILQS 156 (482)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776654
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=2.9e-23 Score=239.80 Aligned_cols=153 Identities=21% Similarity=0.217 Sum_probs=102.3
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....||+++||+|||||||+++|+....... .|. .. .........+..++++.......+.+.......+.++|+|
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGY--AE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEE--EE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCc--cc-cceeeccccccccceecccccccccccccccccceEEEEE
Confidence 3456899999999999999999975321110 000 00 1111111222234444332221111111111237899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCc-ccchHHHHHHHHHcCC-CEEEEEEcccccccccCCCchHHHHHHHHHH
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGV-MVNTERAIRHAIQERL-PIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv-~~qt~~~l~~~~~~~i-p~ilviNKiD~~~~el~l~p~~~~~~l~~ii 295 (989)
||||.+|...+.++++.+|++|+|||+.+|. +.||.+++..+...++ |+++|+||+|+...+ ......
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~----------~~~~~~ 151 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE----------EALSQY 151 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH----------HHHHHH
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH----------HHHHHH
Confidence 9999999999999999999999999999998 9999999999888776 899999999997421 133455
Q ss_pred HHHHHHhhh
Q 001965 296 EVINNHISA 304 (989)
Q Consensus 296 ~~in~~l~~ 304 (989)
+++...+..
T Consensus 152 ~~i~~~l~~ 160 (403)
T 3sjy_A 152 RQIKQFTKG 160 (403)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 566665543
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.90 E-value=8.1e-25 Score=256.95 Aligned_cols=116 Identities=28% Similarity=0.458 Sum_probs=97.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+.++|+|+||+|||||||+++|+.... . . ...+|+|+......+.+ +++.++|||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--~------~-----------~e~~GIT~~i~~~~v~~-----~~~~i~~iD 57 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--A------S-----------GEAGGITQHIGAYHVET-----ENGMITFLD 57 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--S------B-----------TTBCCCCCCSSCCCCCT-----TSSCCCEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--c------c-----------ccCCCeeEeEEEEEEEE-----CCEEEEEEE
Confidence 3567899999999999999999975321 0 0 11356776655544443 456799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||||.+|...+.++++.+|++|||||+.+|+++||.++|.++...++|+++++||+|+..
T Consensus 58 TPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 58 TPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999974
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=4.2e-24 Score=252.83 Aligned_cols=255 Identities=20% Similarity=0.284 Sum_probs=172.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
...|+++||+|||||||+++|........ ..+|+|.......+.+. .+..++|||||
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-------------------~~~giT~~i~~~~v~~~----~g~~i~~iDTP 60 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM-------------------EAGGITQHIGAFLVSLP----SGEKITFLDTP 60 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS-------------------SSCCBCCCTTSCCBCSS----CSSCCBCEECS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc-------------------cCCceeEEEeEEEEEeC----CCCEEEEEECC
Confidence 45699999999999999999975432111 12334443333333221 34568999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHHHHHHHHHHHHH
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVIN 299 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in 299 (989)
||.+|...+.++++.+|++|||||+.+|+++||.++|.++...++|+++|+||+|+...+. .. +.+++.
T Consensus 61 Ghe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~----~~-------v~~~l~ 129 (537)
T 3izy_P 61 GHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADP----EK-------VKKELL 129 (537)
T ss_dssp SSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSC----CS-------SSSHHH
T ss_pred ChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccch----HH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999974331 11 111111
Q ss_pred HHhhhhcccCCCceEEcCCCCceeeccccccceeehhhHHHHhhhccCcccchhhhhhhhcccccccCCCCeEEeCCCCC
Q 001965 300 NHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPAS 379 (989)
Q Consensus 300 ~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ftl~~fa~~y~~~~g~~i~~~~~~~~lwgd~y~~~~~~~~~~~~~~~ 379 (989)
.. ........... .+++.||+.|++.
T Consensus 130 ~~-~~~~e~~~~~~-------~iv~vSAktG~GI---------------------------------------------- 155 (537)
T 3izy_P 130 AY-DVVCEDYGGDV-------QAVHVSALTGENM---------------------------------------------- 155 (537)
T ss_dssp HT-TSCCCCSSSSE-------EECCCCSSSSCSS----------------------------------------------
T ss_pred hh-hhhHHhcCCCc-------eEEEEECCCCCCc----------------------------------------------
Confidence 11 00000000000 1334455544320
Q ss_pred CcchHHHHhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHhcchHHHHhhhcccccChHHHHHHHHHhcCChhh
Q 001965 380 GGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKD 459 (989)
Q Consensus 380 ~~~~~fv~filep~~k~~~~~~~~~~~~L~~~l~~~~~~l~~~el~~~~~~ll~~v~~~~~g~~~~lld~i~~~lPsP~e 459 (989)
..|++++...++.+.
T Consensus 156 ----------------------------------------------------------------~eLle~I~~l~~~~~- 170 (537)
T 3izy_P 156 ----------------------------------------------------------------MALAEATIALAEMLE- 170 (537)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHTTCC-
T ss_pred ----------------------------------------------------------------hhHHHHHHHhhhccc-
Confidence 011222222211110
Q ss_pred hhhhcccccccCCCCcccceeeeccCCCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCce
Q 001965 460 AAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMT 539 (989)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~~~d~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~ 539 (989)
...++++|+.+.|.+.+.++..| .++.+||.+|+|++||.|. .|..
T Consensus 171 ----------------------~~~~~~~~~~~~V~e~~~~~g~G-~V~~g~V~~G~l~~Gd~v~-~g~~---------- 216 (537)
T 3izy_P 171 ----------------------LKADPTGAVEGTVIESFTDKGRG-PVTTAIIQRGTLRKGSILV-AGKS---------- 216 (537)
T ss_dssp ----------------------CCCCSSSSEEEEEEEECCCTTCC-CCEEEEEEEECCSSEEEEC-CSSC----------
T ss_pred ----------------------ccCCCCCCcceeEEEEEEeCCCc-eEEEEEEecCEEEcCCEEE-eCCc----------
Confidence 01256789999999999988764 5999999999999999873 3322
Q ss_pred EEEEeEEEEeecCcceeccccCCCCEEEEeeccceeeccceeecc
Q 001965 540 VKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNL 584 (989)
Q Consensus 540 ~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~Gld~~~~k~~Tl~~~ 584 (989)
..+|..|+...| .++++|.||++|+|.|++.....|++++..
T Consensus 217 ~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~ 258 (537)
T 3izy_P 217 WAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEV 258 (537)
T ss_dssp CEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSC
T ss_pred eEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEec
Confidence 257777776554 568999999999999999865668999864
No 33
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=1.1e-14 Score=169.83 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=104.3
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
..++|+++|++|+|||||+++|+.....+. ....|+|.......+.+ .+..++||||
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~------------------~~~~gtT~d~~~~~~~~-----~~~~~~l~DT 230 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIV------------------SNVAGTTRDAVDTSFTY-----NQQEFVIVDT 230 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------------C---------CCEEEEE-----TTEEEEETTH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceee------------------cCCCCceeeeeEEEEEE-----CCeEEEEEEC
Confidence 567899999999999999999986543221 11234555544444444 4567999999
Q ss_pred CCcccc----------hHH-HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHH
Q 001965 219 PGHVNF----------SDE-MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDA 287 (989)
Q Consensus 219 PGh~df----------~~e-v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~ 287 (989)
||+.++ ... ...+++.+|++|+|+|+.+|.+.|+..++..+...++|+++|+||+|+...+
T Consensus 231 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~-------- 302 (436)
T 2hjg_A 231 AGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKD-------- 302 (436)
T ss_dssp HHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCC--------
T ss_pred CCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcc--------
Confidence 999543 322 3468899999999999999999999999998888999999999999997422
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 288 YHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 288 ~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
....+.+.+++...+.... .. .+++.||+.|++
T Consensus 303 ~~~~~~~~~~~~~~l~~~~--------~~----~~~~~SA~tg~~ 335 (436)
T 2hjg_A 303 ESTMKEFEENIRDHFQFLD--------YA----PILFMSALTKKR 335 (436)
T ss_dssp TTHHHHHHHHHHHHCGGGT--------TS----CEEECCTTTCTT
T ss_pred hHHHHHHHHHHHHhcccCC--------CC----CEEEEecccCCC
Confidence 1112334555555554321 11 367899999875
No 34
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.55 E-value=2.3e-14 Score=158.78 Aligned_cols=117 Identities=26% Similarity=0.288 Sum_probs=89.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+.++|+|+|++|+|||||+++|+.....+. +...+.++ + +.+++ +.+ ++..++|+|
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv---s~~~~tTr--~-----~i~~i--------~~~-----~~~~l~l~D 61 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI---SPRPQTTR--K-----RLRGI--------LTE-----GRRQIVFVD 61 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---CSSSCCCC--S-----CEEEE--------EEE-----TTEEEEEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee---cCCCCcee--E-----EEEEE--------EEe-----CCcEEEEec
Confidence 4567899999999999999999987654332 11112111 1 11111 112 567899999
Q ss_pred CCCccc--------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--CCCEEEEEEcccccc
Q 001965 218 SPGHVN--------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~d--------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
|||+.+ |...+..+++.+|++|+|+|+.++....+..+++.+... ++|+++|+||+|+..
T Consensus 62 TpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 62 TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred CccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 999987 677888999999999999999999888888888888777 899999999999973
No 35
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.53 E-value=5e-14 Score=156.60 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=87.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCC-ceEEEE
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSK-SYLCNI 215 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~-~~~inl 215 (989)
|...-.|+|+|++|+|||||+++|+.....+. +...+.++ ...+++ +.. . ++.++|
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~---s~~~~tT~-------~~~~~~--------~~~-----~~~~~i~l 63 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII---SPKAGTTR-------MRVLGV--------KNI-----PNEAQIIF 63 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---CSSSCCCC-------SCEEEE--------EEE-----TTTEEEEE
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc---CCCCCcee-------eEEEEE--------Eec-----CCCCeEEE
Confidence 34445799999999999999999986543322 11111111 011111 111 3 678999
Q ss_pred eeCCCcccch----------HHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHHHcCCCEEEEEEccccc
Q 001965 216 MDSPGHVNFS----------DEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 216 IDTPGh~df~----------~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~~~~ip~ilviNKiD~~ 276 (989)
+||||+.++. ..+..+++.+|++|+|+|+.++...++..+ ++.+...++|+++|+||+|+.
T Consensus 64 vDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp EECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred EECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 9999997654 677889999999999999999999999888 777777899999999999997
No 36
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.49 E-value=1.2e-13 Score=141.17 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=85.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||++.|........ .. .........+...+.+. ....+...+++.+.++|+|
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~------~~-~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~~~i~D 80 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR------KG-EMVSLATEDERTLFFDF----LPLDIGEVKGFKTRFHLYT 80 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGG------BC-CCEEEECSSCEEEEEEE----CCSSCCCSSSCEEEEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccc------cc-cccccccccccceeeee----cccccccccCCceEEEEEe
Confidence 4456899999999999999976643221100 00 00000000111122221 1111112345678899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH---------cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ---------ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~---------~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+..+...+....++.+.. .++|+++|+||+|+..
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 81 VPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp CCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred CCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 99999999999999999999999999998766666555554432 5789999999999864
No 37
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.49 E-value=6.8e-14 Score=163.92 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=106.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|++|+|||||+++|+.....+. . ...|+|.......+.+ ++..++|||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~---~---------------~~~gtt~~~~~~~~~~-----~~~~~~l~D 249 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV---S---------------NVAGTTRDAVDTSFTY-----NQQEFVIVD 249 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE---C---------------C------CTTSEEEEE-----TTEEEEETT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcccc---C---------------CCCCeEEEEEEEEEEE-----CCceEEEEE
Confidence 3567899999999999999999985543322 1 1123344333333444 456899999
Q ss_pred CCC----------cccchHH-HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchH
Q 001965 218 SPG----------HVNFSDE-MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKD 286 (989)
Q Consensus 218 TPG----------h~df~~e-v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~ 286 (989)
||| +..|... ...+++.||++|+|+|+.+++..++..++.++...++|+++|+||+|+...+ .
T Consensus 250 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~-----~- 323 (456)
T 4dcu_A 250 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKD-----E- 323 (456)
T ss_dssp GGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCC-----S-
T ss_pred CCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCc-----h-
Confidence 999 4555554 3458899999999999999999999999999999999999999999987432 1
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 287 AYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 287 ~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
..++.+.+.++..+.... .. .+++.||+.|++
T Consensus 324 --~~~~~~~~~~~~~~~~~~--------~~----~~~~~SA~~g~g 355 (456)
T 4dcu_A 324 --STMKEFEENIRDHFQFLD--------YA----PILFMSALTKKR 355 (456)
T ss_dssp --SHHHHHHHHHHHHCGGGT--------TS----CEEECCTTTCTT
T ss_pred --HHHHHHHHHHHHhcccCC--------CC----CEEEEcCCCCcC
Confidence 113345555555554311 01 367899999875
No 38
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.48 E-value=2.7e-14 Score=158.20 Aligned_cols=115 Identities=19% Similarity=0.349 Sum_probs=84.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+|+||+|+|||||+++|+.....+. +...+.++ .+.+|+ +.+ +++.++++||
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~---s~~~~tTr-------~~~~gi--------~~~-----~~~~i~~iDT 63 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISIT---SRKAQTTR-------HRIVGI--------HTE-----GAYQAIYVDT 63 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEEC---CCCSSCCS-------SCEEEE--------EEE-----TTEEEEEESS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcccc---CCCCCcce-------eeEEEE--------EEE-----CCeeEEEEEC
Confidence 445899999999999999999986543222 11111111 111222 112 5678999999
Q ss_pred CCcc-c--------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 219 PGHV-N--------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~-d--------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||+. . |...+..+++.+|++++|+|+.. +..+++.+++.+...+.|+++|+||+|+..
T Consensus 64 pG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred cCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 9998 3 33334567889999999999988 888999898888878899999999999973
No 39
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.48 E-value=9e-14 Score=145.88 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=82.3
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCc-ccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHH-MSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~-i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
...++|+++|+.|+|||||+++|+..... .. .... |.|.......+. ..++..++||
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~---~~~~---------------~~t~~~~~~~~~----~~~~~~~~l~ 84 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFA---SKTP---------------GRTQHINYFSVG----PAAEPVAHLV 84 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCT---TCCC---------------CSCCCEEEEEES----CTTSCSEEEE
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceee---cCCC---------------CcccceEEEEec----CCCCCcEEEE
Confidence 45678999999999999999999764321 11 0011 111111111111 1245779999
Q ss_pred eCCCccc----------chHHHHHHhhh---cCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVN----------FSDEMTAALRL---ADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~d----------f~~ev~~alr~---aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||||+.+ |...+...++. +|++|+|+|+.++.......+++.+...++|+++|+||+|+..
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 9999733 23334444444 8889999999999888888888888889999999999999974
No 40
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.48 E-value=1.1e-14 Score=168.29 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=87.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+...+||+|+|+.|||||||+++|+...... .+..+|+|+......+.+. ....++||
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------------~~~~~gtT~d~~~~~~~~~----~~~~l~li 88 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------------VSDYAGTTTDPVYKSMELH----PIGPVTLV 88 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------CCCCEEEEEET----TTEEEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------------cCCCCCeeeeeEEEEEEEC----CCCeEEEE
Confidence 3567899999999999999999986433211 1223556665555555552 12379999
Q ss_pred eCCCcccchH-------HHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccc
Q 001965 217 DSPGHVNFSD-------EMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITE 279 (989)
Q Consensus 217 DTPGh~df~~-------ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~e 279 (989)
|||||.+|.. .+..+++.+|++|+|+|+ +...++..+++.+.+.++|+++|+||+|+...+
T Consensus 89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 9999998753 366788899999999999 888999999999999999999999999998543
No 41
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.47 E-value=2.8e-13 Score=133.86 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=83.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+++|+++|+.|+|||||+++|+....... . ...+++.......+.+ .+..+.|+|||
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~---------------~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~ 57 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVV---A---------------DVPGVTRDLKEGVVET-----DRGRFLLVDTG 57 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------------------------CCEEEEEEE-----TTEEEEEEECG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeec---c---------------CCCCceecceEEEEEe-----CCceEEEEECC
Confidence 46899999999999999999986432111 0 0111222222222323 44679999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|+.. +.......++.+|++|+|+|+..+.......+.+.+...++|+++|+||+|+..
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 58 GLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp GGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 9987 455667788999999999999998877777777777778999999999999974
No 42
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.45 E-value=4.5e-14 Score=142.13 Aligned_cols=117 Identities=27% Similarity=0.442 Sum_probs=88.3
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
..+.++|+++|..|+|||||+++|+...-... ... +++.......+.+ .+..++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~~---------------~~~~~~~~~~~~~-----~~~~~~l~ 60 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ----EAG---------------GITQHIGAYQVTV-----NDKKITFL 60 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCS----SCC---------------SSSTTCCCCEEEE-----TTEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccC----CCC---------------ceeEeeeEEEEEe-----CCceEEEE
Confidence 35667899999999999999999975322111 000 0011111111222 45678999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+..+...++...++.+...++|+++|+||+|+..
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 61 DTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp CCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred ECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 9999999988887888999999999999999888888888888888999999999999974
No 43
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.43 E-value=7.8e-13 Score=135.39 Aligned_cols=148 Identities=15% Similarity=0.239 Sum_probs=96.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+..... . .+.. ..|.|...... .+ +..++|+|
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~----------~~~~------~~~~t~~~~~~--~~------~~~~~l~D 75 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNL-A----------RTSS------KPGKTQTLNFY--II------NDELHFVD 75 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------CCEEEE--EE------TTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-c----------ccCC------CCCceeeEEEE--EE------CCcEEEEE
Confidence 45778999999999999999999753210 0 0000 11112211111 11 12489999
Q ss_pred CCC----------cccchHHHHHHhhhc---CeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCc
Q 001965 218 SPG----------HVNFSDEMTAALRLA---DGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPP 284 (989)
Q Consensus 218 TPG----------h~df~~ev~~alr~a---D~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p 284 (989)
||| +..|...+...++.+ |++++|+|+..+.......+++.+...++|+++|+||+|+...+
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~----- 150 (195)
T 1svi_A 76 VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKG----- 150 (195)
T ss_dssp CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG-----
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChH-----
Confidence 999 555555566666666 99999999999988888778888888899999999999997421
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 285 KDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 285 ~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
+ +....+++...+... ....+...||+.|++
T Consensus 151 -~----~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 151 -K----WDKHAKVVRQTLNID------------PEDELILFSSETKKG 181 (195)
T ss_dssp -G----HHHHHHHHHHHHTCC------------TTSEEEECCTTTCTT
T ss_pred -H----HHHHHHHHHHHHccc------------CCCceEEEEccCCCC
Confidence 1 233445555545321 011356788888764
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.43 E-value=6.8e-13 Score=133.33 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEE
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNI 215 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inl 215 (989)
......+|+++|+.|+|||||+++|+....... +. ...|.+.. ...+.+ +++...+.|
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~~------~~~~~~~~--~~~~~~---~~~~~~~~i 60 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ-----------LF------HTIGVEFL--NKDLEV---DGHFVTMQI 60 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC---------------------CCSEEEE--EEEEEE---TTEEEEEEE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCC-----------CC------CceeeeEE--EEEEEE---CCEEEEEEE
Confidence 344567899999999999999999975321100 00 00111111 112222 234568999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH---H----cCCCEEEEEEccccc
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI---Q----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~---~----~~ip~ilviNKiD~~ 276 (989)
+||||+..|.......++.+|++|+|+|+..+........| ..+. . .++|+++|+||+|+.
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99999999999988999999999999999986544333222 2222 1 578999999999986
No 45
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.42 E-value=4.4e-13 Score=144.77 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=82.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+|+|++|+|||||+++|+......... ... ++|.......+.+ .++.++|||
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~---~~~--------------~~t~~~~~~~~~~-----~~~~i~iiD 77 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL---GSQ--------------TLTKTCSKSQGSW-----GNREIVIID 77 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT---TSC--------------CCCCSCEEEEEEE-----TTEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC---CCC--------------ceeeeeEEEEEEe-----CCCEEEEEE
Confidence 456789999999999999999998655433210 000 0111112222333 567899999
Q ss_pred CCCcccch-----------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc-----CCCEEEEEE-cccccc
Q 001965 218 SPGHVNFS-----------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE-----RLPIVVVVN-KVDRLI 277 (989)
Q Consensus 218 TPGh~df~-----------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~-----~ip~ilviN-KiD~~~ 277 (989)
||||.++. ..+..+++.+|++|+|+|+.. +..++..+++.+.+. +.|+++++| |+|+..
T Consensus 78 TpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 78 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp CCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 99998863 223346788999999999985 777777787777665 678888888 999974
No 46
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.41 E-value=4.2e-13 Score=138.74 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=79.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.....+|+|+|+.|+|||||+++|+....... +.. ..+.+.. ...+.+ ++..+.+.|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~~~------t~~~~~~--~~~~~~---~~~~~~~~l~ 62 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-----------YKA------TIGADFL--TKEVMV---DDRLVTMQIW 62 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-----------CCC------CCSEEEE--EEEEES---SSCEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCC-----------CCC------cccceEE--EEEEEE---CCEEEEEEEE
Confidence 45667899999999999999999976432110 000 0011111 111222 3356789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH-------cCCCEEEEEEccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ-------ERLPIVVVVNKVDRL 276 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~-------~~ip~ilviNKiD~~ 276 (989)
||||+.+|.......++.+|++|+|+|+..+........| ..+.. .++|+++|+||+|+.
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred eCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999999888888889999999999999886544333322 22211 478999999999987
No 47
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.40 E-value=2.5e-12 Score=131.15 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=96.1
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+....... ....+ .|.... +.. .+..+.++|
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~---------------~t~~~~---~~~-----~~~~~~i~D 74 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV---SKTPG---------------KTRSIN---FYL-----VNSKYYFVD 74 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC---CSSCC---------------CCCCEE---EEE-----ETTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccc---cCCCC---------------CccCeE---EEE-----ECCcEEEEE
Confidence 4556899999999999999999976541111 00011 111110 011 123488999
Q ss_pred CCC----------cccchHHHHHHhhh---cCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCc
Q 001965 218 SPG----------HVNFSDEMTAALRL---ADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPP 284 (989)
Q Consensus 218 TPG----------h~df~~ev~~alr~---aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p 284 (989)
||| +..|...+...++. +|++++|+|+..+.......+++++...++|+++|+||+|+...+
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~----- 149 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMS----- 149 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG-----
T ss_pred CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChH-----
Confidence 999 44454444445554 499999999999888888888888888899999999999997321
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 285 KDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 285 ~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
+ .....++++..+.... .-.+...||+.|.+
T Consensus 150 -~----~~~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~g 180 (195)
T 3pqc_A 150 -E----RAKKLEEHRKVFSKYG------------EYTIIPTSSVTGEG 180 (195)
T ss_dssp -G----HHHHHHHHHHHHHSSC------------CSCEEECCTTTCTT
T ss_pred -H----HHHHHHHHHHHHhhcC------------CCceEEEecCCCCC
Confidence 1 2345555665554311 01256678888764
No 48
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.40 E-value=2.4e-13 Score=147.08 Aligned_cols=112 Identities=18% Similarity=0.285 Sum_probs=77.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+++|+++|++|+|||||+++|........ + ..|+|+......+.+ ++..++|+|||
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~-------------~------~pg~Tv~~~~~~~~~-----~~~~~~lvDtp 56 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVG-------------N------WPGVTVEKKTGEFLL-----GEHLIEITDLP 56 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEE-------------E------CTTSSSEEEEEEEEE-----TTEEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCcc-------------C------CCCceEEEEEEEEEE-----CCeEEEEEeCC
Confidence 46899999999999999999964321110 0 112232222233333 45689999999
Q ss_pred CcccchHH---------H-HHHh--hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 220 GHVNFSDE---------M-TAAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~e---------v-~~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|+.+|... + ...+ +.+|++|+|+|+.. ......++.++...++|+++|+||+|+..
T Consensus 57 G~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 57 GVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp CCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred CcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 99988642 2 2334 78999999999987 23445566777788999999999999874
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.39 E-value=1.2e-12 Score=131.50 Aligned_cols=119 Identities=17% Similarity=0.239 Sum_probs=82.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
..+..+|+++|+.++|||||+++|+....... .. .+ .+.+..... +.+ ++..+.+.|+
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~------~t------~~~~~~~~~--~~~---~~~~~~~~l~ 69 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-----CP------HT------IGVEFGTRI--IEV---SGQKIKLQIW 69 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-----CT------TS------CCCCEEEEE--EEE---TTEEEEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC-----CC------Cc------cceEEEEEE--EEE---CCeEEEEEEE
Confidence 34567899999999999999999986432111 00 00 011111111 111 2345679999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHH---HcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~---~~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+..+........ +..+. ..++|+++|+||+|+..
T Consensus 70 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp ECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999999999999999999999999999998754443332 22232 25789999999999863
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.38 E-value=1.3e-12 Score=131.48 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=80.7
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEE
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNI 215 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inl 215 (989)
.+.+..+|+++|+.|+|||||+++|+.....-. ... +. +.... ..+.+ ++..+.++|
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~------t~------~~~~~---~~~~~---~~~~~~~~~ 61 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-----YDP------TI------EDSYT---KICSV---DGIPARLDI 61 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-----CCT------TC------CEEEE---EEEEE---TTEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc-----cCC------Cc------CceEE---EEEEE---CCEEEEEEE
Confidence 355677999999999999999999986422100 000 00 01111 11111 234567999
Q ss_pred eeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HH----HHHHHHHcCCCEEEEEEcccccc
Q 001965 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ER----AIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 216 IDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~----~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+||||+.+|.......++.+|++++|+|+........ .. +++.....++|+++|+||+|+..
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp EECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred EECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999998888899999999999999987533221 12 22222345789999999999874
No 51
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.38 E-value=9.6e-13 Score=134.70 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=83.4
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
...+.+.+|+++|+.|+|||||+++|+....... ....++.......+.+ ++..+.+.
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~ 68 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTES-------------------YISTIGVDFKIRTIEL---DGKTIKLQ 68 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSC-------------------CCCCSSEEEEEEEEEE---TTEEEEEE
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCC-------------------CCCcccceEEEEEEEE---CCEEEEEE
Confidence 3345677899999999999999999985432111 0011111111222222 33457899
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEcccccc
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|+||||+..|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 69 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp EEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 9999999999999999999999999999999865433322 2233332 3789999999999864
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.37 E-value=1.2e-12 Score=132.73 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=82.4
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
-++..+|+++|+.|+|||||+++|+....... . ...++.......+.+ +++...+.|+
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------~-------------~~~~~~~~~~~~~~~---~~~~~~~~l~ 64 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD------S-------------NHTIGVEFGSKIINV---GGKYVKLQIW 64 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------C-------------CCCSEEEEEEEEEEE---TTEEEEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC------C-------------CCccceEEEEEEEEE---CCEEEEEEEE
Confidence 34567899999999999999999975432111 0 001111111112222 3345689999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHH---HHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHA---IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~---~~~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+...........| ..+ ...++|+++|+||+|+..
T Consensus 65 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred eCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999986544433322 222 235789999999999863
No 53
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.37 E-value=9.1e-12 Score=126.70 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=83.7
Q ss_pred HHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCC
Q 001965 130 LVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSK 209 (989)
Q Consensus 130 l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~ 209 (989)
+..+...|....+|+++|+.|+|||||+++|..... ..+. ...|.+. ..+.+ .
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~------------~~~~------~t~g~~~----~~~~~-----~ 58 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI------------SHIT------PTQGFNI----KSVQS-----Q 58 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCC------------EEEE------EETTEEE----EEEEE-----T
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCC------------Cccc------CcCCeEE----EEEEE-----C
Confidence 344445567778899999999999999999953210 0110 0112221 12223 3
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
++.+.++||||+..|.......++.+|++|+|+|+.+...... ...+..+. ..++|+++|+||+|+..
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 6789999999999999988999999999999999987643322 22233332 24789999999999874
No 54
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.36 E-value=1.7e-12 Score=151.28 Aligned_cols=113 Identities=19% Similarity=0.333 Sum_probs=83.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
+.|+|+|++|+|||||+++|+.....+. . | ..|+|.......+.| .+..+.||||||
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v---~---------~------~~g~T~d~~~~~~~~-----~~~~~~l~DT~G 58 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV---E---------D------EEGVTRDPVQDTVEW-----YGKTFKLVDTCG 58 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------CCSEEEEEE-----TTEEEEEEECTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee---c---------C------CCCCccceeeEEEEE-----CCeEEEEEECCC
Confidence 5799999999999999999975433221 0 1 234444444444555 566799999999
Q ss_pred ccc---------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HVN---------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~d---------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
... +...+..+++.||++|+|+|+..|.+...+.+.+.+...++|+++|+||+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 59 VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp TTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 764 23456778999999999999999998888888888888899999999999975
No 55
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.36 E-value=4e-12 Score=128.96 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-+|+++|+.|+|||||+++|+....... ... +....... .+.+ ++..+.++|+||||
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~------t~~~~~~~---------~~~~---~~~~~~~~i~Dt~G 61 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDE-----YDP------TIEDSYRK---------QVVI---DGETCLLDILDTAG 61 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCC-----CCT------TCCEEEEE---------EEEE---TTEEEEEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCC-----CCC------CchheEEE---------EEEE---CCcEEEEEEEECCC
Confidence 4699999999999999999985432111 000 00000001 1111 23456788999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHH----HcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++++|+|+.......... .+..+. ..++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp C---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 9999999999999999999999998754322222 222222 24789999999999873
No 56
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.36 E-value=3e-12 Score=137.71 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=81.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
-.+|+++|++|+|||||+++|+.....+.. .. ..++|.......+.+ .+..++|||||
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~---~~--------------~~~~T~~~~~~~~~~-----~~~~i~liDTP 78 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSR---LG--------------ATSVTRACTTGSRRW-----DKCHVEVVDTP 78 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------CCSCEEEEEEE-----TTEEEEEEECC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCcccc---CC--------------CCCccccEEEEEEEE-----CCcEEEEEECC
Confidence 457999999999999999999865543321 00 011222222222333 56789999999
Q ss_pred Cc--------ccchHHHHHHh----hhcCeEEEEeecCCCcccchHHHHHHHHHc------CCCEEEEEEcccccc
Q 001965 220 GH--------VNFSDEMTAAL----RLADGAVLIVDAAEGVMVNTERAIRHAIQE------RLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh--------~df~~ev~~al----r~aD~ailVVDa~egv~~qt~~~l~~~~~~------~ip~ilviNKiD~~~ 277 (989)
|. ..|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+|||+||+|+..
T Consensus 79 G~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 79 DIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp SCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 98 66777777777 89999999999974 666667777776653 789999999999864
No 57
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.35 E-value=3.2e-12 Score=131.93 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=78.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+|+|+.|+|||||+++|+....... +.. ..|.+.... .+.+ ++..+.++|+|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~~~------t~~~~~~~~--~~~~---~~~~~~l~i~D 83 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFREN-----------ISA------TLGVDFQMK--TLIV---DGERTVLQLWD 83 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------CEEE--EEEE---TTEEEEEEEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCcc-----------CCC------CccceeEEE--EEEE---CCEEEEEEEEE
Confidence 4567899999999999999999975421100 000 011111111 1222 33557799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH---cCCCEEEEEEccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~---~~ip~ilviNKiD~~ 276 (989)
|||+.+|.......++.+|++|+|+|+..+........| ..+.. .++|+++|+||+|+.
T Consensus 84 t~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp CTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999999999999999999987654443333 23322 478999999999986
No 58
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.35 E-value=4.2e-13 Score=135.06 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred hccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceE
Q 001965 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYL 212 (989)
Q Consensus 133 l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 212 (989)
|....+...+|+++|+.|+|||||+++|+....... . ..+++.......+.+ ++..+.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~---------------~~~~~~~~~~~~~~~---~~~~~~ 59 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS----Y---------------ITTIGVDFKIRTVEI---NGEKVK 59 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---C----C---------------TTTBSEEEEEEEEEE---TTEEEE
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCc----c---------------CCCceeEEEEEEEEE---CCEEEE
Confidence 334466778999999999999999999964321100 0 001111111222222 234578
Q ss_pred EEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHHH--cCCCEEEEEEcccccc
Q 001965 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 213 inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
++|+||||+.+|.......++.+|++|+|+|+.++........ +..+.. .++|+++|+||+|+..
T Consensus 60 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp EEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred EEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 9999999999998888889999999999999998654443332 233332 2579999999999764
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.35 E-value=4.3e-12 Score=125.46 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=77.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+....... ... ...+ .. ...+.+ ++..+.++|+||||
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~--~~~~----------~~---~~~~~~---~~~~~~~~l~D~~G 60 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEK-----YDP--TIED----------FY---RKEIEV---DSSPSVLEILDTAG 60 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC-----CCT--TCCE----------EE---EEEEEE---TTEEEEEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCccc-----CCC--Ccce----------eE---EEEEEE---CCEEEEEEEEECCC
Confidence 4699999999999999999985432110 000 0000 00 011111 33456799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHH----HHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAI----RHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l----~~~~~~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++++|+|+.+...... ...+ +.+...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp TTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred chhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 99999999999999999999999987543221 1222 222235789999999999863
No 60
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.34 E-value=2.1e-12 Score=129.63 Aligned_cols=121 Identities=18% Similarity=0.250 Sum_probs=80.3
Q ss_pred cCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEE
Q 001965 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCN 214 (989)
Q Consensus 135 ~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~in 214 (989)
.+|.+..+|+++|+.|+|||||+++|+....... . ...+++......+.+ ++..+.+.
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~---------------~~~~~~~~~~~~~~~---~~~~~~~~ 66 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----Y---------------QATIGIDFLSKTMYL---EDRTVRLQ 66 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS----C---------------CCCCSEEEEEEEEEE---TTEEEEEE
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----C---------------CCceeeEEEEEEEEE---CCeEEEEE
Confidence 3344456899999999999999999985432110 0 000111111112222 33456899
Q ss_pred EeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHH---HcCCCEEEEEEcccccc
Q 001965 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 215 lIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~---~~~ip~ilviNKiD~~~ 277 (989)
|+||||+.+|.......++.+|++|+|+|+......... ..+..+. ..++|+++|+||+|+..
T Consensus 67 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 67 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp EEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999999999999999999999999999999875433222 2223332 24789999999999864
No 61
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.34 E-value=1.7e-12 Score=130.91 Aligned_cols=118 Identities=15% Similarity=0.238 Sum_probs=80.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+....... .. . ..+.+... ..+.+ ++..+.+.|+|
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~--~----------~~~~~~~~--~~~~~---~~~~~~~~i~D 67 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF-----QE--S----------TIGAAFFS--QTLAV---NDATVKFEIWD 67 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT-----SC--C----------CSCCSEEE--EEEEE---TTEEEEEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc-----CC--C----------CceeEEEE--EEEEE---CCEEEEEEEEe
Confidence 4456899999999999999999985432110 00 0 00111111 11112 23456899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHHc---CCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQE---RLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~~---~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.+...... ...+..+... ++|+++|+||+|+..
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp CCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 99999999999999999999999999987654332 3334444433 778999999999863
No 62
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.34 E-value=1.5e-12 Score=141.94 Aligned_cols=112 Identities=22% Similarity=0.256 Sum_probs=79.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
++++|+++|++|+|||||+++|....... | ...|+|+......+.+ +++.++|+||
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~---~----------------~~~~~t~~~~~~~~~~-----~~~~~~l~Dt 57 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHV---G----------------NWPGVTVEKKEGIMEY-----REKEFLVVDL 57 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEE---E----------------ECTTSSCEEEEEEEEE-----TTEEEEEEEC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCccc---C----------------CCCCeEEEeeEEEEEE-----CCceEEEEeC
Confidence 36789999999999999999996432100 0 1122333333333444 5667999999
Q ss_pred CCcccchHH------HHHHh--hhcCeEEEEeecCCCcccchHHHHHHHHHcC-CCEEEEEEccccc
Q 001965 219 PGHVNFSDE------MTAAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQER-LPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df~~e------v~~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~-ip~ilviNKiD~~ 276 (989)
||+.+|... ....+ +.+|++|+|+|+..+ .....++.++...+ +|+++|+||+|+.
T Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 58 PGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp CCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred CCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 999988652 22223 469999999999986 34556667777777 9999999999976
No 63
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.34 E-value=4e-12 Score=132.50 Aligned_cols=117 Identities=18% Similarity=0.265 Sum_probs=74.6
Q ss_pred CCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEE
Q 001965 136 NPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNI 215 (989)
Q Consensus 136 ~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inl 215 (989)
...+..+|+++|+.|+|||||+++|+.....-. ..+. + .....+.+. ..+.+.++|
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~-------~~~~-------------~--~~~~~~~~~--~~~~~~~~i 58 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDT-------QTSI-------------T--DSSAIYKVN--NNRGNSLTL 58 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCB-------CCCC-------------S--CEEEEEECS--STTCCEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccc-------cCCc-------------c--eeeEEEEec--CCCccEEEE
Confidence 344567899999999999999999986431100 0000 0 000112221 112578999
Q ss_pred eeCCCcccchH-HHHHHhhhcCeEEEEeecCCCcccchHHH---HHHHH------HcCCCEEEEEEcccccc
Q 001965 216 MDSPGHVNFSD-EMTAALRLADGAVLIVDAAEGVMVNTERA---IRHAI------QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 216 IDTPGh~df~~-ev~~alr~aD~ailVVDa~egv~~qt~~~---l~~~~------~~~ip~ilviNKiD~~~ 277 (989)
+|||||.+|.. .+...++.+|++|+|+|+.. .......+ |.... ..++|+++|+||+|+..
T Consensus 59 ~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 59 IDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp EECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred EECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 99999999988 56667899999999999986 22222222 22221 23689999999999874
No 64
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.34 E-value=3.5e-12 Score=129.16 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=79.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|+...-... .. .+. +... .. ... .++..+.++|+|
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-----~~------~t~------~~~~-~~--~~~---~~~~~~~l~i~D 72 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDD-----YD------PTI------EDSY-LK--HTE---IDNQWAILDVLD 72 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-----CC------TTC------CEEE-EE--EEE---ETTEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC-----CC------CCc------ccee-EE--EEE---eCCcEEEEEEEE
Confidence 3456899999999999999999985421100 00 000 0011 00 111 133556788999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-----HHHHHHHHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-----ERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-----~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.++..... ..+.+.....++|+++|+||+|+..
T Consensus 73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 99999999999999999999999999998643222 2222333346789999999999864
No 65
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=1.1e-12 Score=152.82 Aligned_cols=113 Identities=23% Similarity=0.347 Sum_probs=79.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+|+|++|+|||||+++|+.....+. +...|+|.......+.| .+..+.|+||||
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v------------------~~~~g~T~d~~~~~~~~-----~~~~~~l~DT~G 60 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV------------------EDTPGVTRDRIYSSAEW-----LNYDFNLIDTGG 60 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------CEEEECTT-----CSSCCEEEC---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------cCCCCCccceEEEEEEE-----CCceEEEEECCC
Confidence 5799999999999999999965432211 11234444433333333 566799999999
Q ss_pred cc--------cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 221 HV--------NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~--------df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
+. .|...+..+++.||++|+|+|+..|.+.....+++.+...++|+++|+||+|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 61 IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp ------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 96 566677889999999999999999999888888888888899999999999986
No 66
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=133.00 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=79.8
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|+.|+|||||+++|+....... +.. ..+.+... ..+.+ +++.+.+.|+||
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------~~~------t~~~~~~~--~~~~~---~~~~~~l~l~Dt 82 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-----------CKS------TVGVDFKI--KTVEL---RGKKIRLQIWDT 82 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-------------------C------CTTEEEEE--EEEEE---TTEEEEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-----------CCC------ccceeEEE--EEEEE---CCeEEEEEEEeC
Confidence 345799999999999999999964321100 000 01111111 12222 334578999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHH---HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~---~~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.++...+....| ..+. ..++|+++|+||+|+..
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999999999999999999999999987655543333 2332 24789999999999864
No 67
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.34 E-value=5.1e-12 Score=127.72 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=78.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+.+..+|+++|+.|+|||||+++|+...- . ..... +. +.+.. ..+.+ ++..+.+.|+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~---~~~~~------t~------~~~~~---~~~~~---~~~~~~~~l~ 71 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEF--V---EDYEP------TK------ADSYR---KKVVL---DGEEVQIDIL 71 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCC--C---CSCCT------TC------CEEEE---EEEEE---TTEEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC--C---CcCCC------cc------ceEEE---EEEEE---CCEEEEEEEE
Confidence 34567899999999999999999985431 1 00000 00 00010 01111 2345679999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHH----HHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+.+....... ..+..+ ...++|+++|+||+|+..
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred ECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999999999999875432221 222222 224789999999999864
No 68
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.34 E-value=6.3e-12 Score=146.52 Aligned_cols=151 Identities=19% Similarity=0.299 Sum_probs=98.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+|+|++|+|||||+++|+.....+. +.. .|+|.......+.+ .+..+.++||
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v---~~~---------------~gtT~d~~~~~i~~-----~g~~~~l~Dt 235 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV---SPI---------------PGTTRDPVDDEVFI-----DGRKYVFVDT 235 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE---CCC---------------C------CCEEEEE-----TTEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc---CCC---------------CCCcCCceEEEEEE-----CCEEEEEEEC
Confidence 356899999999999999999976543222 111 12333333333444 4567899999
Q ss_pred CCcccchH------------HHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchH
Q 001965 219 PGHVNFSD------------EMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKD 286 (989)
Q Consensus 219 PGh~df~~------------ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~ 286 (989)
||+..+.. ....+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+...+ .
T Consensus 236 ~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~------~ 309 (439)
T 1mky_A 236 AGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR------E 309 (439)
T ss_dssp SCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG------G
T ss_pred CCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCch------h
Confidence 99854332 23568899999999999999988888888888888899999999999987321 1
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 287 AYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 287 ~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
..++.+.+++...+.... ...+.+.||++|++
T Consensus 310 --~~~~~~~~~~~~~~~~~~------------~~~~~~~SA~~g~g 341 (439)
T 1mky_A 310 --KRYDEFTKLFREKLYFID------------YSPLIFTSADKGWN 341 (439)
T ss_dssp --GCHHHHHHHHHHHCGGGT------------TSCEEECBTTTTBS
T ss_pred --hHHHHHHHHHHHHhccCC------------CCcEEEEECCCCCC
Confidence 012233344444443211 11367899999875
No 69
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.33 E-value=6.7e-12 Score=128.26 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=78.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|+....... +.. ..+.+.. .+.+ ..+.++|+|||
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~~~------t~~~~~~----~~~~-----~~~~~~l~Dt~ 75 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNED-----------MIP------TVGFNMR----KITK-----GNVTIKLWDIG 75 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------CCC------CCSEEEE----EEEE-----TTEEEEEEEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCc-----------cCC------CCceeEE----EEEe-----CCEEEEEEECC
Confidence 45799999999999999999975432100 000 0111111 1222 56889999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
|+.+|...+...++.+|++|+|+|+........ ...+..+.. .++|+++|+||+|+..
T Consensus 76 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp CSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 999999888999999999999999987533222 223333322 5789999999999974
No 70
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=1.1e-12 Score=153.56 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=84.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
..++|+|+|++|+|||||+++|+.....+. ....|+|.......+.+ .+..+++|||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v------------------~~~~g~t~~~~~~~~~~-----~~~~~~liDT 78 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV------------------EDTPGVTRDRIYSSAEW-----LNYDFNLIDT 78 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------CEEEECTT-----CSSCCEEECC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------CCCCCcceeEEEEEEEE-----CCceEEEEEC
Confidence 357899999999999999999964322111 11234554443333333 5678999999
Q ss_pred CC--------cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 219 PG--------HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PG--------h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
|| +..|...+..+++.+|++|+|+|+..|.+.....+++.+.+.++|+++|+||+|+.
T Consensus 79 ~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 79 GGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 99 66677778899999999999999999999999999999998999999999999986
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.33 E-value=3.4e-12 Score=128.50 Aligned_cols=120 Identities=21% Similarity=0.266 Sum_probs=70.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+....+|+++|+.|+|||||+++|+....... . . ..++.......+.+ ..+....+.|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~-~-------------~~~~~~~~~~~~~~--~~~~~~~~~l~ 63 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ-----Y-K-------------ATIGADFLTKEVTV--DGDKVATMQVW 63 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-----C-----------------CCCSCEEEEECC--SSSCCEEEEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc-----c-C-------------CccceEEEEEEEEE--cCCcEEEEEEE
Confidence 45667899999999999999999976432110 0 0 00000011111111 11345789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH-------cCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ-------ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~-------~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+..
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred ECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 9999999998888899999999999999986544333322 22221 5789999999999863
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.32 E-value=4.8e-12 Score=128.65 Aligned_cols=123 Identities=18% Similarity=0.114 Sum_probs=81.8
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec------CCCCc
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED------SNSKS 210 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------~~~~~ 210 (989)
.+...+|+++|+.|+|||||+++|+....... .. . ..+..... ...+.+.. ..+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------~~-----~------t~~~~~~~-~~~~~~~~~~~~~~~~~~~ 69 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK------FI-----T------TVGIDFRE-KRVVYRANGPDGAVGRGQR 69 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS------CC-----C------CCSEEEEE-EEEEECTTSCCCSSCCCEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcC------cc-----c------ccceeeee-EEEEEecCCcccccccCcE
Confidence 35567899999999999999999975332100 00 0 00111110 00111100 00115
Q ss_pred eEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH----cCCCEEEEEEcccccc
Q 001965 211 YLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 211 ~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+.++|+||||+..|.......++.+|++|+|+|+..+...... ..+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 6899999999999999999999999999999999886554442 33333333 5789999999999864
No 73
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.32 E-value=8.2e-12 Score=123.59 Aligned_cols=115 Identities=19% Similarity=0.253 Sum_probs=75.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|+...-... ... +. +.+.. ..+.+ +++.+.+.|+|||
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~-t~-----------~~~~~---~~~~~---~~~~~~~~l~D~~ 60 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEP-TK-----------ADSYR---KKVVL---DGEEVQIDILDTA 60 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSC-----CCT-TC-----------CEEEE---EEEEE---TTEEEEEEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCC-----CCC-Cc-----------ceEEE---EEEEE---CCEEEEEEEEECC
Confidence 45799999999999999999986431100 000 00 00110 01111 3345689999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHH----HcCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
|+.+|.......++.+|++++|+|+......... ..+..+. ..++|+++|+||+|+..
T Consensus 61 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp C---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred CcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 9999999999999999999999999875432222 2222222 24789999999999874
No 74
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=2.6e-12 Score=129.38 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=74.6
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.+...+|+++|+.|+|||||+++|+....... . +.. ..+.+.... .+.+ ++..+.++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~-------~~~------t~~~~~~~~--~~~~---~~~~~~~~~~ 65 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG---T-------FIS------TVGIDFRNK--VLDV---DGVKVKLQMW 65 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCC---C-------CCC------CCSCEEEEE--EEEE---TTEEEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCC---C-------cCC------ceeeEEEEE--EEEE---CCEEEEEEEE
Confidence 34556899999999999999999976432111 0 000 011111111 1111 3345689999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+..+...... ..+..+.. .++|+++|+||+|+..
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred eCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 9999999998888999999999999999986543332 22333333 5789999999999874
No 75
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.32 E-value=3.6e-13 Score=157.97 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=64.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|++|+|||||+++|+.....+. .. ..|+|.......+.+ +++.++||||||+
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~v---s~---------------~~gtT~d~~~~~i~~-----~g~~l~liDT~G~ 291 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIV---SH---------------MPGTTRDYIEECFIH-----DKTMFRLTDTAGL 291 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC------------------------------------CEEEEE-----TTEEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccc---CC---------------CCCceEEEEEEEEEE-----CCeEEEEEECCCC
Confidence 499999999999999999975433222 11 122333333333333 5678999999999
Q ss_pred ccchHHHHH--------HhhhcCeEEEEeecCCCccc----chHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTA--------ALRLADGAVLIVDAAEGVMV----NTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~--------alr~aD~ailVVDa~egv~~----qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.++.+.+.. .++.+|++|+|+|+..+... ....+++.+. ++|+++|+||+|+..
T Consensus 292 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 292 REAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAA 357 (476)
T ss_dssp ----------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCT
T ss_pred CcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCC
Confidence 887765433 56889999999999998876 3444444333 789999999999874
No 76
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.32 E-value=4.3e-12 Score=126.05 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=79.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+....... ... ..+.+..... +.+ +++.+.+.++||||
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~-------------~~~~~~~~~~--~~~---~~~~~~~~~~D~~G 61 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN----KEP-------------TIGAAFLTQR--VTI---NEHTVKFEIWDTAG 61 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT----CCC-------------CSSEEEEEEE--EEE---TTEEEEEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC----CCC-------------ccceeEEEEE--EEE---CCEEEEEEEEECCC
Confidence 3699999999999999999985432110 000 0111221111 112 33556899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp SGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 9999999999999999999999999865433322 2223322 4789999999999974
No 77
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.32 E-value=5.2e-12 Score=125.23 Aligned_cols=114 Identities=16% Similarity=0.251 Sum_probs=77.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+.... . .... .+ .+.... ..+ ..+++.+.++|+||||
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~--~---~~~~------~t------~~~~~~---~~~---~~~~~~~~~~l~D~~G 60 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF--V---EKYD------PT------IEDSYR---KQV---EVDCQQCMLEILDTAG 60 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC--C---CSCC------CC------SEEEEE---EEE---ESSSCEEEEEEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C---CCCC------CC------ccceEE---EEE---EECCEEEEEEEEECCC
Confidence 4699999999999999999975321 1 0000 00 011110 011 1234567899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++++|+|+........ ...+..+. ..++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp SCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred hHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 99999999999999999999999987533222 22222222 34789999999999974
No 78
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=3.2e-12 Score=132.81 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=81.8
Q ss_pred ccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEE
Q 001965 134 MSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLC 213 (989)
Q Consensus 134 ~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~i 213 (989)
|...++..+|+++|+.|+|||||+++|+...-.. ....+ .++.. ....+.+ ++..+.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~------~~~~t-----------~~~~~--~~~~~~~---~~~~~~l 77 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP------GQGAT-----------IGVDF--MIKTVEI---NGEKVKL 77 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT------TCCCC-----------CSEEE--EEEEEEE---TTEEEEE
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCC------CCCCc-----------cceeE--EEEEEEE---CCEEEEE
Confidence 3344566789999999999999999997542110 00000 11111 1112222 3345689
Q ss_pred EEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHH---HcCCCEEEEEEcccccc
Q 001965 214 NIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 214 nlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~---~~~ip~ilviNKiD~~~ 277 (989)
+|+||||+..|.......++.+|++|+|+|+.......... .+..+. ..++|+++|+||+|+..
T Consensus 78 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 78 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp EEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999999999998889999999999999998765433222 223332 24689999999999863
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=8.1e-12 Score=124.31 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=77.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+....... +..+. +.+... . .. .++..+.+.|+||||
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~~t~------~~~~~~-~--~~---~~~~~~~~~~~Dt~G 60 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES-----------YIPTV------EDTYRQ-V--IS---CDKSICTLQITDTTG 60 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS-----------CCCCS------CEEEEE-E--EE---ETTEEEEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----------CCCCc------cccEEE-E--EE---ECCEEEEEEEEECCC
Confidence 4699999999999999999975321100 00000 011110 0 11 123456799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHHH-----cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAIQ-----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~~-----~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++|+|+|+....... ....+..+.+ .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 61 SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp CSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred chhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 9999999999999999999999998754322 2334444433 3789999999999864
No 80
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.31 E-value=2.4e-12 Score=128.14 Aligned_cols=115 Identities=22% Similarity=0.285 Sum_probs=78.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|+....... + ...++.......+.+ ++..+.+.|+|||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~--------~~~~~~~~~~~~~~~---~~~~~~~~l~D~~ 60 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPS-----------F--------ITTIGIDFKIKTVDI---NGKKVKLQIWDTA 60 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------------------------CCEEEEEEES---SSCEEEEEEECCT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC-----------C--------CCccceeEEEEEEEE---CCEEEEEEEEeCC
Confidence 45799999999999999999975321100 0 011111111112222 3356789999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~ 276 (989)
|+.+|...+...++.+|++|+|+|+......... ..+..+.. .++|+++|+||+|+.
T Consensus 61 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp TGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 9999988888999999999999999876543332 23333333 378999999999984
No 81
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.31 E-value=3.7e-12 Score=126.51 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=80.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+....... . +...+.+.....+ .+ ++..+.++++||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~------------~~~~~~~~~~~~~--~~---~~~~~~~~~~D~ 62 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF-----Q------------ESTIGAAFLTQTV--CL---DDTTVKFEIWDT 62 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----C------------CCCSSEEEEEEEE--EE---TTEEEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC-----C------------CCccceEEEEEEE--EE---CCEEEEEEEEeC
Confidence 345799999999999999999975321100 0 0111222222211 11 235678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 99999999999999999999999999876543332 23333333 3678999999999864
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.31 E-value=2.6e-12 Score=127.55 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
++..+|+++|+.|+|||||+++|+....... ...+. +..... ..+.+ ++..+.+.|+|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------~~~t~-----------~~~~~~--~~~~~---~~~~~~~~l~D 60 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKD------YKKTI-----------GVDFLE--RQIQV---NDEDVRLMLWD 60 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCC------SSCCC-----------SSSEEE--EEEEE---TTEEEEEEEEC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCC------CCCce-----------EEEEEE--EEEEE---CCEEEEEEEEc
Confidence 3456799999999999999999975421100 00000 000111 11111 23456799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH--cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++++|+|+......... ..+..+.. .++|+++|+||+|+..
T Consensus 61 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred CCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 999999988888999999999999999876533322 22233322 4889999999999874
No 83
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.31 E-value=1.4e-11 Score=126.57 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=73.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|+... .. .. ....+. ....+.+ ++..++|+|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~-------------~~---~~t~~~----~~~~~~~-----~~~~~~i~D 79 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IV-------------TT---IPTIGF----NVETVEY-----KNICFTVWD 79 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CE-------------EE---EEETTE----EEEEEEE-----TTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--cc-------------cc---CCcCce----eEEEEEE-----CCEEEEEEE
Confidence 344679999999999999999995321 00 00 011111 1112222 568899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 80 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp CC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 99999998888889999999999999987643222 223333322 3789999999999863
No 84
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.31 E-value=4.9e-12 Score=129.41 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=52.5
Q ss_pred eEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHH-HcCCCEEEEEEccc
Q 001965 211 YLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAI-QERLPIVVVVNKVD 274 (989)
Q Consensus 211 ~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~-~~~ip~ilviNKiD 274 (989)
..+.|+||||+.+|.......++.+|++|+|+|+..+...+... .+..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 78999999999999999999999999999999999875544433 233333 35689999999999
No 85
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.30 E-value=3.1e-12 Score=130.62 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=78.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+....... . . . ..+.+.... .+.+ +++.+.++|+||
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~-~-----~------t~~~~~~~~--~~~~---~~~~~~~~l~Dt 76 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDR-----T-E-----A------TIGVDFRER--AVDI---DGERIKIQLWDT 76 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSS-----C-C-----C------CCSCCEEEE--EEEE---TTEEEEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC-----C-C-----C------CcceEEEEE--EEEE---CCEEEEEEEEEC
Confidence 456899999999999999999975432110 0 0 0 011111111 1122 234578999999
Q ss_pred CCcccch-HHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHH----HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFS-DEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~-~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
||+.+|. ......++.+|++|+|+|+.......... .+..+. ..++|+++|+||+|+..
T Consensus 77 ~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp CCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred CCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999988 66778899999999999998754332222 222222 35789999999999964
No 86
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.30 E-value=2.3e-12 Score=132.10 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=80.5
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+...++|+|+|+.|+|||||+++|+....... .+.. ..|.++. .+. +..+.++|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------~~~~------t~~~~~~----~~~-----~~~~~~~i~ 68 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------HITA------TVGYNVE----TFE-----KGRVAFTVF 68 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--------------CCCC------CSSEEEE----EEE-----ETTEEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------cccc------ccceeEE----EEE-----eCCEEEEEE
Confidence 34567899999999999999999964322110 0111 1112221 122 267889999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHHc-----------CCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQE-----------RLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~~-----------~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+.++..... ...+..+... ++|+++|+||+|+..
T Consensus 69 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred ECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 999999999888889999999999999998754332 2333444333 889999999999974
No 87
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.30 E-value=8.6e-12 Score=129.21 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=79.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+...+|+++|+.|+|||||+++|+...-.. .+ ...++.......+.+ +++.+.++|+|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-----------~~--------~~t~~~~~~~~~~~~---~~~~~~l~i~D 84 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-----------RQ--------GSTIGVDFTMKTLEI---QGKRVKLQIWD 84 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------CEEEEEEEE---TTEEEEEEEEC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-----------CC--------CCCcceEEEEEEEEE---CCEEEEEEEEE
Confidence 345679999999999999999997532100 00 011111111122222 23457899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.+....... ..+..+.. .++|++||+||+|+..
T Consensus 85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 999999999999999999999999999875443322 23333333 4689999999999874
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.30 E-value=2.9e-12 Score=127.79 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=78.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+.... . . +.. ..+.+. ..+.+ +...+.++||
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~---~-------~~~------t~~~~~----~~~~~-----~~~~~~~~Dt 58 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--V---T-------TIP------TIGFNV----ETVTY-----KNLKFQVWDL 58 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--C---C-------CCC------CSSEEE----EEEEE-----TTEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--C---C-------cCC------cCccce----EEEEE-----CCEEEEEEEC
Confidence 346799999999999999999975321 1 0 000 011111 12223 4678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+........ ...+..... .++|+++|+||+|+..
T Consensus 59 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 59 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp CCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 9999998888888999999999999987643222 222333322 5789999999999974
No 89
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.30 E-value=5.9e-12 Score=129.96 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=81.1
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|+.|+|||||+++|+....... +.. ..|++.....+ .+ +++...+.|+||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~~~------t~~~~~~~~~~--~~---~~~~~~~~l~Dt 64 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-----------FVS------TVGIDFKVKTI--YR---NDKRIKLQIWDT 64 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-----------CCC------CCSEEEEEEEE--EE---TTEEEEEEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------cCC------ccceeEEEEEE--EE---CCeEEEEEEEEC
Confidence 456899999999999999999975321100 000 11222222211 11 335678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+..+...... ..+..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 65 AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp CCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred CCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 99999999999999999999999999876543322 23333333 4789999999999864
No 90
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.30 E-value=1.4e-11 Score=121.50 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=77.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+....... ... +......+ .+.. ++..+.+.++||||
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~------~~~~~~~~---------~~~~---~~~~~~~~~~D~~G 60 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-----CDP------TIEDSYRK---------QVVI---DGETCLLDILDTAG 60 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-----CCT------TCCEEEEE---------EEEE---TTEEEEEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-----cCC------ccceEEEE---------EEEE---CCEEEEEEEEECCC
Confidence 3699999999999999999975421100 000 00000000 1111 23456789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++++|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred chhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99999999999999999999999987543222 223333322 3789999999999874
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.30 E-value=6.9e-12 Score=127.27 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=78.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+...- . .+..+. |.+ ...+.+ +++.+.|+||
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~----------~~~~t~------~~~----~~~~~~-----~~~~~~i~Dt 72 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--V----------HTSPTI------GSN----VEEIVI-----NNTRFLMWDI 72 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--E----------EEECCS------SSS----CEEEEE-----TTEEEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C----------ccCCcC------cee----eEEEEE-----CCEEEEEEEC
Confidence 345799999999999999999975321 1 011100 000 111222 4578999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.+...... ...+..+. ..++|+++|+||+|+..
T Consensus 73 ~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 73 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp SSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 9999998888889999999999999998643322 23333333 25789999999999864
No 92
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.30 E-value=5.8e-12 Score=128.91 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=81.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+...+|+|+|+.|+|||||+++|+....... .. ...|.+.....+. . .+....+.|+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----~~------------~t~~~~~~~~~~~--~---~~~~~~~~i~D 80 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----SR------------TTIGVEFSTRTVM--L---GTAAVKAQIWD 80 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----CC------------CCSSEEEEEEEEE--E---TTEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----CC------------CccceeEEEEEEE--E---CCEEEEEEEEe
Confidence 4456799999999999999999986432111 00 0111222111111 1 23567799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+........ ...+..+.. .++|+++|+||+|+..
T Consensus 81 t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 99999999889999999999999999987654333 233333332 3679999999999974
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=1.1e-11 Score=127.18 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=79.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+....... +..+. +.+.. .. .. .++..+.+.|+|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~t~------~~~~~-~~--~~---~~~~~~~~~l~D 62 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT-----------YIPTI------EDTYR-QV--IS---CDKSVCTLQITD 62 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT-----------TSCCC------CEEEE-EE--EE---ETTEEEEEEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc-----------ccCcc------cccee-EE--EE---ECCEEEEEEEEe
Confidence 3456799999999999999999975322100 00000 01111 00 11 123456799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH-----cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ-----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~-----~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+........ ...+..+.. .++|+++|+||+|+..
T Consensus 63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp CCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred CCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99999999999999999999999999987543222 223333322 3689999999999864
No 94
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.29 E-value=3.8e-12 Score=139.01 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=77.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|++|+|||||+++|........ + ..|+|+......+.+ .+..++|+||||
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~-------------~------~~g~t~~~~~~~~~~-----~~~~~~liDtpG 59 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG-------------N------WAGVTVERKEGQFST-----TDHQVTLVDLPG 59 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEE-------------E------CTTSSSEEEEEEEEC-----SSCEEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccC-------------C------CCCeeEEEEEEEEEe-----CCCceEEEECcC
Confidence 4799999999999999999965431110 0 112222222223333 456799999999
Q ss_pred cccchH---------HHHH---HhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFSD---------EMTA---ALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~---------ev~~---alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+.+|.. .+.+ ..+.+|++|+|+|+... .....++.++...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 60 TYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp CSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred CCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 988762 1122 23689999999999872 3445566777788999999999999863
No 95
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.29 E-value=7.3e-12 Score=130.78 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=80.3
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC-------CCCc
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS-------NSKS 210 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-------~~~~ 210 (989)
++..+|+|+|+.++|||||+++|+.... . . +....+++......+.+... +...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~---------~--------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF--N---------P--------KFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC--C---------C--------EEEEEEEEEEEEEEEEEEC-------CCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC--C---------c--------CCCCceeEEEEEEEEEECCccccccccCcee
Confidence 4456799999999999999999974221 0 0 01111222212222222110 0115
Q ss_pred eEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHHH----cCCCEEEEEEcccccc
Q 001965 211 YLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 211 ~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~~----~~ip~ilviNKiD~~~ 277 (989)
..++|+||||+.+|...+...++.+|++|+|+|+...........|. .+.. .++|+++|+||+|+..
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 78999999999999999999999999999999998765443332222 2221 5679999999999864
No 96
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.29 E-value=2.9e-12 Score=129.53 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=75.3
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+....... +..+. +.+. .. .+.+ ++..+.++|+||
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-----------~~~t~------~~~~-~~--~~~~---~~~~~~~~l~Dt 61 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS-----------YDPTI------ENTF-TK--LITV---NGQEYHLQLVDT 61 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSC-----------CCTTC------CEEE-EE--EEEE---TTEEEEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCC-----------CCCCc------cccE-EE--EEEE---CCEEEEEEEEeC
Confidence 456899999999999999999985331100 00010 1111 11 1111 335577899999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccch-----HHHHHHHHHcCCCEEEEEEccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-----ERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-----~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
||+.+|.......++.+|++|+|+|+........ ..+++.+...++|+++|+||+|+.
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999997777788899999999999987432222 222233334578999999999985
No 97
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=6.5e-12 Score=128.82 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=81.8
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
++..+|+++|+.|+|||||+++|+...... .+.. ..|.+.....+. .++..+.++|+|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------~~~~------~~~~~~~~~~~~-----~~~~~~~~~i~D 78 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-----------NISP------TIGASFMTKTVP-----CGNELHKFLIWD 78 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-----------TCCC------CSSEEEEEEEEE-----CSSSEEEEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC-----------CcCC------CcceeEEEEEEE-----eCCEEEEEEEEc
Confidence 344579999999999999999997543110 0000 112222222111 133567899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.......... .+..+.. .++|+++|+||+|+..
T Consensus 79 t~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp ECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999999999999999999999999998765433332 2333333 3789999999999863
No 98
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.29 E-value=1.1e-11 Score=122.82 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=76.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+++|+.|+|||||+++|+...- . ...+ ..+... ..+.+ +++.++|+||||+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~---~~~~-------------t~~~~~----~~~~~-----~~~~~~i~Dt~G~ 54 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--V---TTIP-------------TIGFNV----ETVEY-----KNISFTVWDVGGQ 54 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--S---CCCC-------------CSSCCE----EEEEC-----SSCEEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--C---cccC-------------cCceeE----EEEEE-----CCEEEEEEEcCCC
Confidence 699999999999999999975431 1 0000 001111 11112 5678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
.+|.......++.+|++|+|+|+.+.-.... ...+..+.. .++|+++|+||+|+..
T Consensus 55 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 9999888899999999999999987643222 223333322 3789999999999964
No 99
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.28 E-value=1.8e-11 Score=126.13 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=79.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+|+|+.|+|||||+++|+....... ... +. +.+. ...+.+ ++..+.+.|+|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~------t~------~~~~---~~~~~~---~~~~~~~~l~D 68 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEP------TK------ADSY---RKKVVL---DGEEVQIDILD 68 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----CCT------TC------CEEE---EEEEEE---TTEEEEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCC-----CCC------cc------ceEE---EEEEEE---CCEEEEEEEEc
Confidence 4456899999999999999999985431100 000 00 0011 011112 23456799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHH----HcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+......... ..+..+. ..++|+++|+||+|+..
T Consensus 69 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred CCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 999999999999999999999999999875432222 2222222 23789999999999874
No 100
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.28 E-value=4.1e-12 Score=129.77 Aligned_cols=118 Identities=20% Similarity=0.215 Sum_probs=81.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+...+|+++|+.|+|||||+++|+....... +.. ..|++.....+ .. .++.+.++|+|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~------t~~~~~~~~~~--~~---~~~~~~~~l~D 77 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-----------FVS------TVGIDFKVKTV--YR---HDKRIKLQIWD 77 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------CCC------CCCCEEEEEEE--EE---TTEEEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC-----------cCC------ceeEEEEEEEE--EE---CCeEEEEEEEe
Confidence 3456899999999999999999975432110 000 11222221111 11 23567899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+......... ..+..+.. .++|+++|+||+|+..
T Consensus 78 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp CCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 999999988888899999999999999876443332 33344443 3789999999999864
No 101
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.28 E-value=8.2e-12 Score=138.51 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=55.8
Q ss_pred ceEEEEeeCCCccc-------------chHHHHHHhhhcCeEEEEeec-CCCcccchH-HHHHHHHHcCCCEEEEEEccc
Q 001965 210 SYLCNIMDSPGHVN-------------FSDEMTAALRLADGAVLIVDA-AEGVMVNTE-RAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 210 ~~~inlIDTPGh~d-------------f~~ev~~alr~aD~ailVVDa-~egv~~qt~-~~l~~~~~~~ip~ilviNKiD 274 (989)
...++||||||+.+ +...+..+++.+|++|+|+|+ ..+...+.. .+++.+...+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 46799999999864 556677899999999999997 567665553 778888778899999999999
Q ss_pred ccc
Q 001965 275 RLI 277 (989)
Q Consensus 275 ~~~ 277 (989)
+..
T Consensus 210 l~~ 212 (315)
T 1jwy_B 210 LMD 212 (315)
T ss_dssp SSC
T ss_pred cCC
Confidence 974
No 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.28 E-value=1.7e-12 Score=135.79 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=79.7
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+....+|+++|+.|+|||||+++|+.... . ..+..+ .+.+. ....+....+..+.++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~---------~~~~~t------~~~~~----~~~~~~~~~~~~~~~~l~ 66 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRF--E---------KNYNAT------VGAVN----HPVTFLDDQGNVIKFNVW 66 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCST--T---------CEEETT------TTEEE----EEEEEEBTTSCEEEEEEE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCC--C---------CCCCCc------cceee----EEEEEEeCCCcEEEEEEE
Confidence 44566899999999999999999863221 0 001000 01111 111112222334789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHH---HHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHA---IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~---~~~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+.++...+....| ..+ ...++|+++|+||+|+..
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred ecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9999999988888889999999999999987665554222 222 234689999999999863
No 103
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.28 E-value=1.7e-12 Score=131.50 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=59.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+...+|+++|+.|+|||||+++|+...... .+ ..+++.......+.+ +++.+.++|+|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-----------~~--------~~t~~~~~~~~~~~~---~~~~~~~~l~D 63 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-----------TF--------ISTIGIDFKIRTIEL---DGKRIKLQIWD 63 (183)
T ss_dssp SEEEEEEEECCCCC---------------------------CH--------HHHHCEEEEEEEEEE---TTEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------CC--------CCcccceeEEEEEEE---CCEEEEEEEEc
Confidence 446789999999999999999996422100 00 011111111122222 33457899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 99999998888888999999999999988643322 223333433 3689999999999863
No 104
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=5.5e-12 Score=128.76 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=80.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.++|||||+++|+....... +. ...+.+.....+ .+ ++..+.+.|+||
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~------~t~~~~~~~~~~--~~---~~~~~~~~i~Dt 71 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE-----------LA------ATIGVDFKVKTI--SV---DGNKAKLAIWDT 71 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----------CC------CCCSEEEEEEEE--EE---TTEEEEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc-----------CC------CccceEEEEEEE--EE---CCeEEEEEEEeC
Confidence 345799999999999999999975432100 00 011122222222 12 335678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHHH----cCCCEEEEEEccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~~----~~ip~ilviNKiD~~ 276 (989)
||+.+|.......++.+|++|+|+|+........... +..+.. .++|+++|+||+|+.
T Consensus 72 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 72 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 9999999889999999999999999988654433332 333333 367999999999985
No 105
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.27 E-value=6.3e-12 Score=127.13 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+...-. . . .. .+..+ ... ..+.+ ++..+.+.|+||||
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~---~-~~--~t~~~----~~~---------~~~~~---~~~~~~~~i~Dt~G 62 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-G---E-YI--PTVFD----NYS---------ANVMV---DGKPVNLGLWDTAG 62 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-S---S-CC--CCSCC----EEE---------EEEEE---TTEEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-C---C-cC--Ccccc----eeE---------EEEEE---CCEEEEEEEEECCC
Confidence 46999999999999999999753211 0 0 00 00000 000 01111 33566788999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHH--HHHHHHHc--CCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER--AIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~--~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++|+|+|+..+....... ++..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred CHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 9999888888899999999999999865444432 33344433 889999999999974
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.27 E-value=3.4e-12 Score=132.55 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=79.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+...-.-. +..+... .. ...+. .++..+.++|+||
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------~~~t~~~------~~---~~~~~---~~~~~~~l~i~Dt 85 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------YIPTVFD------NY---SANVM---VDGKPVNLGLWDT 85 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC------------CCCCSEE------EE---EEEEE---CC-CEEEEEEEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-----------cCCeecc------ee---EEEEE---ECCEEEEEEEEEC
Confidence 345799999999999999999975432110 0000000 00 01111 1345677889999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH--HHHHHHHc--CCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER--AIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~--~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.++....... .+..+... ++|+++|+||+|+..
T Consensus 86 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 86 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred CCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 999999988888999999999999999876554432 33344443 789999999999974
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.27 E-value=2.4e-11 Score=122.67 Aligned_cols=112 Identities=23% Similarity=0.329 Sum_probs=74.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|++|+|||||+++|........ ....+ ...|. ....+.+ .+..+.++||||+
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~---~~~~~--~t~~~-------------~~~~~~~-----~~~~~~l~Dt~G~ 62 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIV---TDIAG--TTRDV-------------LREHIHI-----DGMPLHIIDTAGL 62 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCC---CSSTT--CCCSC-------------EEEEEEE-----TTEEEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccee---eCCCC--ceece-------------eeEEEEE-----CCeEEEEEECCCc
Confidence 599999999999999999975432211 01111 00111 0111222 3456899999999
Q ss_pred ccchHH--------HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc---CCCEEEEEEccccc
Q 001965 222 VNFSDE--------MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE---RLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~e--------v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~---~ip~ilviNKiD~~ 276 (989)
.++... +...++.+|++|+|+|+..........++..+... ++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 764321 23468999999999999987766555555555433 68999999999985
No 108
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.27 E-value=5.2e-12 Score=129.33 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=80.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+....... .. . ..+.+.... .+.+ +++.+.++|+|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~--~----------t~~~~~~~~--~~~~---~~~~~~~~i~D 76 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----HD--L----------TIGVEFGAR--MVNI---DGKQIKLQIWD 76 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------CCSSEEEE--EEEE---TTEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----CC--C----------cccceeEEE--EEEE---CCEEEEEEEEE
Confidence 3445799999999999999999976432111 00 0 001111111 1111 33456899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.+....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 77 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 999999988888999999999999999876543332 33334433 3789999999999864
No 109
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.27 E-value=4e-12 Score=131.68 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=81.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.+...+|+++|+.|+|||||+++|+....... +.. ..+.+.. ...+.+ ++..+.+.|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~~~------t~~~~~~--~~~~~~---~~~~~~~~l~ 62 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTND-----------YIS------TIGVDFK--IKTVEL---DGKTVKLQIW 62 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTT-----------CCC------SSCCCEE--EEEEEE---TTEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------CCC------cccceeE--EEEEEE---CCEEEEEEEE
Confidence 34567899999999999999999975432110 000 0011111 111222 2345689999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHHH---cCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+..+........ +..+.. .++|+++|+||+|+..
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred eCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999999998888889999999999999998654433322 233332 4689999999999964
No 110
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=130.28 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=78.0
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+....... . +.. ..+... ..+.+ +++.+.|+||
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~-------~~~------t~~~~~----~~~~~-----~~~~~~l~Dt 74 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQ---N-------ILP------TIGFSI----EKFKS-----SSLSFTVFDM 74 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCS---S-------CCC------CSSEEE----EEEEC-----SSCEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC---C-------cCC------ccceeE----EEEEE-----CCEEEEEEEC
Confidence 345799999999999999999964331111 0 000 011111 12222 3578999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH------cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ------ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~------~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 75 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 75 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp CCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 9999998888889999999999999987633222 223333332 4789999999999973
No 111
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.27 E-value=1.5e-11 Score=133.33 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|++|+|||||+++|+....... . + ..+.|.......+.+ .+..++|||
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~---~---------~------~~~~t~~~~~~~~~~-----~~~~l~liD 90 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV---S---------P------FQAEGLRPVMVSRTM-----GGFTINIID 90 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC---C---------S------SCC-CCCCEEEEEEE-----TTEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc---C---------C------CCCcceeeEEEEEEE-----CCeeEEEEE
Confidence 3457899999999999999999986443211 0 0 011122222223333 566899999
Q ss_pred CCCcccchHHH---HHHhh------hcCeEEEEeecCC-CcccchHHHHHHHHHc-C----CCEEEEEEccccc
Q 001965 218 SPGHVNFSDEM---TAALR------LADGAVLIVDAAE-GVMVNTERAIRHAIQE-R----LPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~df~~ev---~~alr------~aD~ailVVDa~e-gv~~qt~~~l~~~~~~-~----ip~ilviNKiD~~ 276 (989)
||||.+|.... .+.++ .+|++|+|+|+.. ........+++.+... + .|+++|+||+|+.
T Consensus 91 TpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 91 TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 99998875432 23233 7899999987754 3333344555555432 2 3999999999985
No 112
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=5.4e-12 Score=129.20 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=81.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
+...+|+|+|+.|+|||||+++|+....... +. ...+++.... .+.. +++.+.+.|+|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~~------~t~~~~~~~~--~~~~---~~~~~~~~i~D 78 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-----------FV------STVGIDFKVK--TVYR---HEKRVKLQIWD 78 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC-----------EE------EEETTTEEEE--EEEE---TTTTEEEEEEC
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-----------cC------CCeeeEEEEE--EEEE---CCEEEEEEEEe
Confidence 3455799999999999999999976432110 00 0011111111 1111 34678899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|||+..|.......++.+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999999999999999999999999987543332 233334433 4789999999999864
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.26 E-value=3.4e-11 Score=127.20 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|..|+|||||+++|+...-... + ..+.|.......+.+ +...+.|+|
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~-------------~------~~~~t~~~~~~~~~~-----~~~~~~l~D 82 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ-------------S------YSFTTKNLYVGHFDH-----KLNKYQIID 82 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE-------------C------C-----CEEEEEEEE-----TTEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC-------------C------CCCcceeeeeeeeec-----CCCeEEEEE
Confidence 3566899999999999999999964321100 0 011121111111222 457799999
Q ss_pred CCCcccc---------hHHHHHHhhhcCeEEEEeecCCCcccch---HHHHHHHHHc--CCCEEEEEEcccccc
Q 001965 218 SPGHVNF---------SDEMTAALRLADGAVLIVDAAEGVMVNT---ERAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df---------~~ev~~alr~aD~ailVVDa~egv~~qt---~~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
|||+.++ ...+....+.+|++|+|+|+........ ..++..+... ++|+++|+||+|+..
T Consensus 83 tpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 83 TPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp CTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred CCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 9999432 1223344678899999999998755332 2444555554 789999999999974
No 114
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.26 E-value=3.1e-11 Score=124.23 Aligned_cols=119 Identities=20% Similarity=0.251 Sum_probs=78.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+.+..+|+++|..|+|||||+++|........ +...+. ........+ ..++.+.++|+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~---------~~~~~~-----------~~~~~~~~~--~~~~~~~l~i~ 74 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNE---------TLFLES-----------TNKIYKDDI--SNSSFVNFQIW 74 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGG---------GGGCCC-----------CCSCEEEEE--CCTTSCCEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcc---------eeeecc-----------ccceeeeec--cCCCeeEEEEE
Confidence 34456799999999999999998754211100 000010 001111111 12356789999
Q ss_pred eCCCcccchHHH---HHHhhhcCeEEEEeecCCCcccchHHHHHHHHH-----cCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEM---TAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ-----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev---~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~-----~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.... ...++.+|++|+|+|+.+........+...+.. .++|+++|+||+|+..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 999999998777 789999999999999998733333333333332 3789999999999874
No 115
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.26 E-value=7.2e-12 Score=125.90 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+...... .+..+. |.... ...+.+. .+..+.++|+||
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-----------~~~~t~------~~~~~--~~~~~~~--~~~~~~~~~~Dt 63 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-----------QYKQTI------GLDFF--LRRITLP--GNLNVTLQIWDI 63 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-----------HHHHTT------TSSEE--EEEEEET--TTEEEEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-----------CCCCce------eEEEE--EEEEEeC--CCCEEEEEEEEC
Confidence 34579999999999999999997543210 000000 00011 1111221 113477999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH-----cCCC-EEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ-----ERLP-IVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~-----~~ip-~ilviNKiD~~~ 277 (989)
||+..|.......++.+|++|+|+|+.+........ .+..+.. .+.| +++|+||+|+..
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp TTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred CCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 999999988999999999999999998865443332 2233322 2567 789999999864
No 116
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.26 E-value=6.1e-12 Score=130.60 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=78.3
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+|+|+.++|||||+++|+....... ... + .+.+.. ...+.+ ++..+.+.|+|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~--~-----------~~~~~~--~~~~~~---~~~~~~~~l~D 75 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPS----FIT--T-----------IGIDFK--IKTVDI---NGKKVKLQLWD 75 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCS----SSC--C-----------CSCCEE--EEEEEE---TTEEEEEEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcc----cCC--c-----------ccceEE--EEEEEE---CCEEEEEEEEe
Confidence 3456899999999999999999975432110 000 0 001111 111222 23446799999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~ 276 (989)
|||+..|...+...++.+|++|+|+|+..+...... ..+..+.. .++|+++|+||+|+.
T Consensus 76 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp CTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999988888999999999999999876543332 23333332 378999999999984
No 117
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.26 E-value=1e-11 Score=123.55 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=80.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|+....... + ....|.+.....+ .+ ++..+.+.|+|||
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------~------~~~~~~~~~~~~~--~~---~~~~~~~~~~Dt~ 63 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN-----------I------NPTIGASFMTKTV--QY---QNELHKFLIWDTA 63 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT-----------C------CCCCSEEEEEEEE--EE---TTEEEEEEEEEEC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC-----------C------CCceeEEEEEEEE--EE---CCeEEEEEEEcCC
Confidence 45799999999999999999975431100 0 0011222222211 12 2345789999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|+.+|.......++.+|++|+|+|+......... ..+..+.. .++|+++|+||+|+..
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp CSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred CchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 9999999889999999999999999986544433 23344433 3568999999999974
No 118
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.26 E-value=5.1e-12 Score=125.85 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=72.8
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+....... ... ..+.+.... .+. .+++.+.+.++||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~-------------t~~~~~~~~--~~~---~~~~~~~l~i~Dt 62 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDK----HIT-------------TLGASFLTK--KLN---IGGKRVNLAIWDT 62 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSS----CCC-------------CCSCEEEEE--EEE---SSSCEEEEEEEEC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcC----CCC-------------ccceEEEEE--EEE---ECCEEEEEEEEEC
Confidence 345799999999999999999975432100 000 001111111 111 1345678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHH---HHcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHA---IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~---~~~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.+........ .+..+ ...++|+++|+||+|+..
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp CCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred CCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 999999888888899999999999998765433322 22222 235789999999999974
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.25 E-value=6.7e-12 Score=128.72 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=79.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|+....... +..+ .+.+... .+.+ ++..+.++|+|
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~-----------~~~t------~~~~~~~---~~~~---~~~~~~~~i~D 77 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTA-----------YVPT------VFENFSH---VMKY---KNEEFILHLWD 77 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------CCCC------SEEEEEE---EEEE---TTEEEEEEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCc-----------cCCe------eeeeeEE---EEEE---CCEEEEEEEEE
Confidence 3445799999999999999999976432100 0000 0111110 1111 34567789999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch--HHHHHHHHHc--CCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT--ERAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt--~~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.+...... ..++..+... ++|+++|+||+|+..
T Consensus 78 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999999888889999999999999998654433 2223333332 689999999999874
No 120
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=4.4e-11 Score=124.96 Aligned_cols=112 Identities=17% Similarity=0.309 Sum_probs=75.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|+....... .. .+ ..+++. ......++++|
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----~~---~~--------~~~~~~------------~~~~~~~~l~D 61 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----VV---SQ--------EPLSAA------------DYDGSGVTLVD 61 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----CC---CS--------SCEEET------------TGGGSSCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----ee---ec--------CceEEE------------EeeCceEEEEE
Confidence 4567899999999999999999976432110 00 00 000110 00345689999
Q ss_pred CCCcccchHHHHHHhhh----cCeEEEEeecC---CCcccchHHHHHHHH------HcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRL----ADGAVLIVDAA---EGVMVNTERAIRHAI------QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~----aD~ailVVDa~---egv~~qt~~~l~~~~------~~~ip~ilviNKiD~~~ 277 (989)
|||+..|...+...++. +|++|+|+|+. +........+..... ..++|+++|+||+|+..
T Consensus 62 t~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred CCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 99999998888888887 99999999998 232222222222222 15789999999999974
No 121
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.25 E-value=2.1e-11 Score=121.94 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|........ . ..++|+......+.+ .+..+.++||||
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~---~----------------~~~~t~~~~~~~~~~-----~~~~l~i~Dt~G 59 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIG---N----------------WPGVTVEKKEGEFEY-----NGEKFKVVDLPG 59 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC------------------------CCCCCEEEEEE-----TTEEEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeecc---C----------------CCCcceeeeEEEEEE-----CCcEEEEEECCC
Confidence 5799999999999999999964321000 0 011122111112222 356799999999
Q ss_pred cccch------HHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFS------DEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~------~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+.+|. ......++ .+|++++|+|+... ......+..+.+.++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 60 VYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp CSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred cccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 98874 12233443 78999999999862 1223345555667899999999999863
No 122
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.25 E-value=7.2e-12 Score=124.41 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-+|+++|+.|+|||||+++|........ ..+ .+.+.. ..+.+ ++..+.+.++||||
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~------------~~~------~~~~~~---~~~~~---~~~~~~~~i~D~~g 58 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPE------------AEA------AGHTYD---RSIVV---DGEEASLMVYDIWE 58 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------------------------CEEE---EEEEE---TTEEEEEEEEECC-
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCC------------CCc------cccceE---EEEEE---CCEEEEEEEEECCC
Confidence 4699999999999999999953221100 010 111111 01111 33567789999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++++|+|+........ ...+..+.. .++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp --------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred CccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 99999888899999999999999986543222 223333333 4789999999999864
No 123
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.25 E-value=5.4e-12 Score=128.24 Aligned_cols=113 Identities=17% Similarity=0.248 Sum_probs=79.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|+... .. . +.. ..+.+. ..+.+ +++.++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~---~-------~~~------t~~~~~----~~~~~-----~~~~~~~~D 68 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD---T-------ISP------TLGFNI----KTLEH-----RGFKLNIWD 68 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS---S-------CCC------CSSEEE----EEEEE-----TTEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC---c-------ccc------cCccce----EEEEE-----CCEEEEEEE
Confidence 345689999999999999999997433 11 0 000 011111 12222 467899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
|||+.+|...+...++.+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 69 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 99999988888888999999999999987653322 233333332 4789999999999874
No 124
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.25 E-value=6.1e-12 Score=130.12 Aligned_cols=117 Identities=20% Similarity=0.259 Sum_probs=77.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+|+|+.|+|||||+++|+....... + ...++.......+.+ +++.+.++|+||
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------~--------~~t~~~~~~~~~~~~---~~~~~~l~l~Dt 81 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-----------S--------NHTIGVEFGSRVVNV---GGKTVKLQIWDT 81 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------------------------CCEEEEEEEE---TTEEEEEEEECC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-----------C--------CCcccceeEEEEEEE---CCeeeEEEEEcC
Confidence 456799999999999999999974321110 0 011111111111222 234578999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHH---HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAI---QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~---~~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+......+.... +..+. ..++|+++|+||+|+..
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp TTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred CCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 9999888888889999999999999998654443322 23332 24789999999999863
No 125
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.25 E-value=2e-11 Score=124.38 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=67.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+....... ... +.. .... ..+.+ ++..+.+.|+||||
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~------t~~------~~~~---~~~~~---~~~~~~~~l~Dt~G 78 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDE-----YDP------TIE------DSYR---KQVVI---DGETCLLDILDTAG 78 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSC-----CCT------TCC------EEEE---EEEEE---TTEEEEEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccc-----cCC------ccc------eEEE---EEEEE---CCEEEEEEEEECCC
Confidence 4799999999999999999985431100 000 000 0010 01111 23456799999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHH-HHHHHH----cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA-IRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~-l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+.+|.......++.+|++++|+|+........... +..+.. .++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 99999999999999999999999987654333222 222322 3789999999999864
No 126
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=1.2e-11 Score=125.95 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|+..... .+..+ .+ .....+.+ +++.+.|+|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~~~~t------~~----~~~~~~~~-----~~~~~~i~D 66 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV------------HTSPT------IG----SNVEEIVI-----NNTRFLMWD 66 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE------------EEECC------SC----SSCEEEEE-----TTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------cCcCC------Cc----cceEEEEE-----CCEEEEEEE
Confidence 34567999999999999999999743221 00000 00 11111222 457899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccc-hHHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVN-TERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~q-t~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.++.... ....+..+.. .++|+++|+||+|+..
T Consensus 67 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 67 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9999999888889999999999999999874322 2233333332 5789999999999963
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.24 E-value=1.2e-11 Score=134.01 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=78.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|++|+|||||+++|........ + ..|+|+......+.+ +++.+.|+||
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~-------------~------~pg~tv~~~~~~~~~-----~~~~~~l~Dt 59 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVA-------------N------WPGVTVEKKEGVFTY-----KGYTINLIDL 59 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEE-------------E------CTTSCCEEEEEEEEE-----TTEEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCccc-------------C------CCCceEEEEEEEEEE-----CCeEEEEEEC
Confidence 446799999999999999999964321110 0 123344333333333 4678999999
Q ss_pred CCcccchH-----HHH-HHh--hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSD-----EMT-AAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~-----ev~-~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||+..|.. .+. ..+ ..+|++|+|+|+.... ....++.++...++|+++|+||+|+..
T Consensus 60 pG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 60 PGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp CCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 99988753 122 233 4799999999998742 233456677778999999999999863
No 128
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=6.1e-12 Score=127.19 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|+.... . .+..+ .|.+. ..+.+ ++..++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~----------~~~~t------~~~~~----~~~~~-----~~~~~~i~D 68 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV--V----------TTKPT------IGFNV----ETLSY-----KNLKLNVWD 68 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE--E----------EECSS------TTCCE----EEEEE-----TTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc--C----------ccCCc------Cccce----EEEEE-----CCEEEEEEE
Confidence 5667899999999999999999953211 1 00000 00111 11222 457899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+........ ...+..+. ..++|+++|+||+|+..
T Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 69 LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 99999988888888999999999999987643222 23333333 35789999999999864
No 129
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=2.2e-11 Score=123.80 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=75.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|........ ...++|+......+.+ ++..++++||
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~-------------------~~~~~t~~~~~~~~~~-----~~~~~~l~Dt 61 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG-------------------NWPGVTVEKKEGEFEY-----NGEKFKVVDL 61 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE-------------------ECTTSCCEEEEEEEEE-----TTEEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-------------------CCCCeeccceEEEEEe-----CCcEEEEEEC
Confidence 446899999999999999999974321000 0111222222222333 4578999999
Q ss_pred CCcccch------HHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 219 PGHVNFS------DEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~------~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
||+.+|. ......++ .+|++++|+|+... ......+..+...++|+++|+||+|+..
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 62 PGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp CCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 9999884 22333444 49999999998852 2334455566667899999999999864
No 130
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=8.3e-12 Score=127.86 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=80.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|+.|+|||||+++|+.... . .. +..+....... .+. .+++.+.++|+||
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~---~~------~~~t~~~~~~~---------~~~---~~~~~~~~~i~D~ 73 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--P---EE------YVPTVFDHYAV---------SVT---VGGKQYLLGLYDT 73 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--C---CS------CCCSSCCCEEE---------EEE---SSSCEEEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--C---CC------CCCcccceeEE---------EEE---ECCEEEEEEEEEC
Confidence 456899999999999999999986421 1 00 00000000000 111 1335578999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHHc--CCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+......... ..+..+... ++|+++|+||+|+..
T Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 74 AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp CCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred CCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999988888889999999999999876543332 233444444 889999999999874
No 131
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.24 E-value=7.6e-12 Score=128.42 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=77.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|....- . . +..+ .+.+ ...+.+ +++.++++|||
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~--~---~-------~~~t------~~~~----~~~~~~-----~~~~~~i~Dt~ 75 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL--A---T-------LQPT------WHPT----SEELAI-----GNIKFTTFDLG 75 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC--C---C-------CCCC------CSCE----EEEEEE-----TTEEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--C---c-------cccC------CCCC----eEEEEE-----CCEEEEEEECC
Confidence 45799999999999999999975321 1 0 0000 0111 112223 44789999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
|+..|.......++.+|++|+|+|+.++..... ...+..+. ..++|+++|+||+|+..
T Consensus 76 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp CSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 999988777788899999999999998753322 22233332 25789999999999974
No 132
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.24 E-value=2.1e-11 Score=121.33 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=68.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+.+|+++|+.|+|||||+++|........ . ... .+.......+.+ ++..+.+.++|||
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~---~---~~~-------------~~~~~~~~~~~~---~~~~~~~~i~D~~ 59 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA---H---EME-------------NSEDTYERRIMV---DKEEVTLIVYDIW 59 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------CEEEEEEEE---TTEEEEEEEECCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc---c---cCC-------------CcCCeeeEEEEE---CCeEEEEEEEECC
Confidence 34699999999999999999964332111 0 000 011111111112 3356789999999
Q ss_pred CcccchH-HHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH----cCCCEEEEEEcccccc
Q 001965 220 GHVNFSD-EMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~-ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
|+.+|.. .....++.+|++|+|+|+......... ..+..+.. .++|+++|+||+|+..
T Consensus 60 g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp CC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred CccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 9999876 445668899999999999874332222 22333332 3789999999999863
No 133
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.23 E-value=4.7e-11 Score=130.25 Aligned_cols=122 Identities=13% Similarity=0.233 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.||+++|++|+|||||+++|+......... .. .......++++......+.+ ++....++|+||||
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~----~~-------~~~~~~~t~~~~~~~~~~~~---~~~~~~l~liDTpG 74 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEY----PG-------PSHRIKKTVQVEQSKVLIKE---GGVQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC--------------------------CCCEEEEEEECC-----CCEEEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCC----CC-------cccccCCceEEEEEEEEEec---CCeEEEEEEEECCC
Confidence 479999999999999999996443222100 00 00001222223222222322 23446899999999
Q ss_pred cccc-------hHHH-------HHHhhh-------------cCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEEEc
Q 001965 221 HVNF-------SDEM-------TAALRL-------------ADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 221 h~df-------~~ev-------~~alr~-------------aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilviNK 272 (989)
+.++ ...+ ...++. +|+++++|+.. .+.......+++.+.. ++|+|+|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 9543 2222 334443 67888888655 5888888888888877 8999999999
Q ss_pred ccccc
Q 001965 273 VDRLI 277 (989)
Q Consensus 273 iD~~~ 277 (989)
+|++.
T Consensus 154 ~D~~~ 158 (274)
T 3t5d_A 154 ADTLT 158 (274)
T ss_dssp GGGSC
T ss_pred cCCCC
Confidence 99973
No 134
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.23 E-value=3.3e-12 Score=149.35 Aligned_cols=111 Identities=25% Similarity=0.380 Sum_probs=71.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|++|+|||||+++|+.....+. ....+.+ .|.. .. .+.+ +++.++|+||||+
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~a~v---~~~~gtT--~d~~----~~---------~i~~-----~g~~v~liDT~G~ 282 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDRAIV---TDLPGTT--RDVV----ES---------QLVV-----GGIPVQVLDTAGI 282 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHBSCC---SCCTTCC--HHHH----HH---------EEEE-----TTEEEEECC----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc---cCCCCee--EEEE----EE---------EEEE-----CCEEEEEEECCcc
Confidence 499999999999999999987654433 1112211 1211 11 1122 4567999999999
Q ss_pred ccchHHHHH--------HhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 222 VNFSDEMTA--------ALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~ev~~--------alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.++.+.+.. .++.+|++|+|+|+..+...+...+++.+.. .|+++|+||+|+..
T Consensus 283 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~ 344 (462)
T 3geh_A 283 RETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVE 344 (462)
T ss_dssp ----------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSC
T ss_pred ccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCc
Confidence 887665443 5678999999999999988888777777643 69999999999974
No 135
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.23 E-value=6.7e-12 Score=132.09 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=78.8
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
++...+|+|+|+.++|||||+++|+....... + ...++.......+.+ +++.+.+.|+
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------~--------~~t~~~~~~~~~~~~---~~~~~~~~i~ 67 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-----------S--------KSTIGVEFATRTLEI---EGKRIKAQIW 67 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------------------CCSEEEEEEEE---TTEEEEEEEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-----------C--------CCcccceeEEEEEEE---CCEEEEEEEE
Confidence 34567899999999999999999976432111 0 000111111112222 2345789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH---cCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
||||+..|.......++.+|++|+|+|+..+....... .+..+.. .++|++||+||+|+..
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp CCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred ECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999999888888899999999999999865443322 2333333 3789999999999874
No 136
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.22 E-value=1.2e-11 Score=125.80 Aligned_cols=117 Identities=13% Similarity=0.182 Sum_probs=78.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+...... .+..+. +.... ..+. .++..+.+.|+|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-----------~~~~t~------~~~~~---~~~~---~~~~~~~~~i~D 61 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------NYVPTV------FENYT---ASFE---IDTQRIELSLWD 61 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------SCCCCS------EEEEE---EEEE---CSSCEEEEEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC-----------CCCCcc------ceeEE---EEEE---ECCEEEEEEEEE
Confidence 344579999999999999999997642210 000110 00110 0111 133567899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHH-HHHHH--cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAI-RHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l-~~~~~--~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+......... ..| ..+.. .++|+++|+||+|+..
T Consensus 62 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 999999988777888999999999999875443332 222 33333 3789999999999873
No 137
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.22 E-value=6.1e-12 Score=126.92 Aligned_cols=116 Identities=20% Similarity=0.159 Sum_probs=73.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+....... ... + ..+. .. ..+. .++..+.++|+||
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~-----~~~-t-~~~~----------~~---~~~~---~~~~~~~~~i~Dt 63 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD-----YVP-T-VFDN----------FS---ANVV---VNGATVNLGLWDT 63 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------CB---CCCC----------CEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-----CCC-e-eeee----------EE---EEEE---ECCEEEEEEEEEC
Confidence 345799999999999999999975431100 000 0 0000 00 0011 1234566889999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH--HHHHHHH--cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER--AIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~--~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.......... ++..+.. .++|+++|+||+|+..
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 64 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp CC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 999999888888999999999999998765433332 3333333 2789999999999863
No 138
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.22 E-value=3.4e-11 Score=120.45 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=69.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|+....... ... .|.+..... +.+ ++..+.+.++|||
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~---~~~---------------~~~~~~~~~--~~~---~~~~~~~~~~D~~ 60 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL---HEQ---------------LGEDVYERT--LTV---DGEDTTLVVVDTW 60 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC--------CCC---------------SSSSEEEEE--EEE---TTEEEEEEEECCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc---cCc---------------cccceeEEE--EEE---CCEEEEEEEEecC
Confidence 45799999999999999999974322111 000 111111111 112 2345678999999
Q ss_pred Cccc--chHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHHc----CCCEEEEEEcccccc
Q 001965 220 GHVN--FSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQE----RLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~d--f~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~~----~ip~ilviNKiD~~~ 277 (989)
|+.. +.......++.+|++++|+|+........ ...+..+... ++|+++|+||+|+..
T Consensus 61 g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred CCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 9988 44555566788999999999987543222 2333344433 789999999999964
No 139
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=126.07 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+... .. ..+..+.. .... ..+.+ ++..+.+.|+|
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~---------~~~~~t~~------~~~~---~~~~~---~~~~~~~~i~D 74 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YP---------TEYIPTAF------DNFS---AVVSV---DGRPVRLQLCD 74 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-------------------CCSS------EEEE---EEEEE---TTEEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CC---------CCCCCccc------ceeE---EEEEE---CCEEEEEEEEE
Confidence 345679999999999999999997432 11 00000000 0010 11111 23456788999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHH--cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+......... .++..+.. .++|+++|+||+|+..
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred CCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999999888777889999999999999876544332 23333333 2789999999999874
No 140
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.22 E-value=1.4e-11 Score=128.17 Aligned_cols=116 Identities=19% Similarity=0.163 Sum_probs=77.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|+.|+|||||+++|+....... +..+....... .+. .++..+.+.|+||
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~-----------~~~t~~~~~~~---------~~~---~~~~~~~~~i~Dt 64 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTD-----------YIPTVFDNFSA---------NVA---VDGQIVNLGLWDT 64 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-----------CCCSSCCCEEE---------EEE---CSSCEEEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCcc-----------CCCccceeEEE---------EEE---ECCEEEEEEEEEC
Confidence 345799999999999999999975432100 00000000000 111 1335678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHHc--CCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.+....... .++..+... ++|++||+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 99999988888889999999999999876543332 233344333 789999999999863
No 141
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=6.8e-11 Score=121.47 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=76.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|+.|+|||||+++|+....... .. .+. +... . ..+.+ ++..+.+.|+||
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----~~------~t~------~~~~-~--~~~~~---~~~~~~~~l~Dt 83 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-----YD------PTL------ESTY-R--HQATI---DDEVVSMEILDT 83 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-----CC------TTC------CEEE-E--EEEEE---TTEEEEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-----cC------CCC------CceE-E--EEEEE---CCEEEEEEEEEC
Confidence 345799999999999999999986432110 00 000 0001 0 01111 335677999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHH----HHcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHA----IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~----~~~~ip~ilviNKiD~~~ 277 (989)
||+.+ .......++.+|++|+|+|+.+...... ...+..+ ...++|+++|+||+|+..
T Consensus 84 ~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 84 AGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp CCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred CCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 99998 6777888999999999999987432221 2222222 235889999999999974
No 142
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.21 E-value=2.6e-11 Score=129.25 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+...++|+++|+.|+|||||+++|+....... + ...+++|.......+.+ .+..++||
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-------~----------~~~~~~t~~~~~~~~~~-----~~~~i~li 83 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-------G----------TAAKSITKKCEKRSSSW-----KETELVVV 83 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------CCSCEEEEEEE-----TTEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-------C----------CCCCceeeeEEEEEEEe-----CCceEEEE
Confidence 34567899999999999999999975433111 0 00112233222233334 56789999
Q ss_pred eCCCcccc-------hHHHHHH----hhhcCeEEEEeecCCCcccchHHHHHHHH-----HcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNF-------SDEMTAA----LRLADGAVLIVDAAEGVMVNTERAIRHAI-----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df-------~~ev~~a----lr~aD~ailVVDa~egv~~qt~~~l~~~~-----~~~ip~ilviNKiD~~~ 277 (989)
||||+.+. ..++.+. .+.+|++|+|+|+.. ........++.+. ....|+++|+||+|++.
T Consensus 84 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp ECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 99997653 2233333 345699999999874 3344444444432 23459999999999974
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.21 E-value=2.9e-11 Score=141.91 Aligned_cols=110 Identities=20% Similarity=0.360 Sum_probs=80.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|.+|+|||||+++|+.....+. ....+.+ .|.. ...+.+ .+..++|+||||+
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~a~v---s~~~gTT--~d~~-------------~~~i~~-----~g~~~~l~DTaG~ 301 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDRAIV---TDIPGTT--RDVI-------------SEEIVI-----RGILFRIVDTAGV 301 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCC---CCSSCCS--SCSC-------------CEEEEE-----TTEEEEEEESSCC
T ss_pred EEEEECcCCCcHHHHHHHHHCCCCCcc---CCCCCee--eeeE-------------EEEEec-----CCeEEEEEECCCc
Confidence 699999999999999999987654332 1122211 1211 111222 4567999999999
Q ss_pred c-cch--------HHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 222 V-NFS--------DEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~-df~--------~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
. ++. ......++.+|++|+|+|+.++...+...+++.+ .++|+++|+||+|+.
T Consensus 302 ~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 302 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp CSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred cccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 8 664 2356788999999999999998777777777665 478999999999986
No 144
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.21 E-value=7.9e-12 Score=129.15 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=76.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+....... ... ..+.+. ... + ..++..+.++|+||
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~------------t~~~~~-~~~--~---~~~~~~~~~~l~Dt 79 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEG-----YDP------------TVENTY-SKI--V---TLGKDEFHLHLVDT 79 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-----CCC------------CSEEEE-EEE--E---C----CEEEEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCC-----CCC------------ccceEE-EEE--E---EECCEEEEEEEEEC
Confidence 456799999999999999999985432110 000 001111 111 1 11335678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHH----HcCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.......... .+..+. ..++|+++|+||+|+..
T Consensus 80 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 80 AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred CCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 999999888888999999999999999754333222 222222 34789999999999864
No 145
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=2e-11 Score=126.83 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=77.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
-.+|+++|+.|+|||||+++|+....... +..+. +.... ..+.+ +++.+.+.|+|||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~t~------~~~~~---~~~~~---~~~~~~~~i~Dt~ 81 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV-----------YVPTV------FENYV---ADIEV---DGKQVELALWDTA 81 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC------------------------CCEEE---EEEEE---TTEEEEEEEEECT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc-----------CCCcc------cceEE---EEEEE---CCEEEEEEEEECC
Confidence 35799999999999999999975432110 00000 00110 01111 3345679999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccch--HHHHHHHHHc--CCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT--ERAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt--~~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
|+.+|.......++.+|++|+|+|+........ ..++..+... ++|+++|+||+|+..
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp TCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred CcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 999998888888999999999999987543222 2333444433 789999999999974
No 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.9e-11 Score=135.57 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+|+|+.|+|||||+++|+... +. .. . -|+......+.+ ++..++|+||||
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~--~~-------------~~---~----pT~~~~~~~~~~-----~~~~l~i~Dt~G 218 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE--IV-------------TT---I----PTIGFNVETVEY-----KNISFTVWDVGG 218 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC--CE-------------EE---E----EETTEEEEEEEE-----TTEEEEEEECC-
T ss_pred ceEEEECCCCccHHHHHHHHhCCC--CC-------------Cc---c----cccceEEEEEec-----CcEEEEEEECCC
Confidence 469999999999999999995321 10 00 0 022222222333 568899999999
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCccc--chHHHHHHHHH---cCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMV--NTERAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~--qt~~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
+..|.......++.+|++|+|+|+.+.... ....+...+.. .++|++||+||+|+..
T Consensus 219 ~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 219 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp ----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 999999999999999999999999764322 22222223222 3789999999999874
No 147
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.21 E-value=2.1e-11 Score=126.10 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=78.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|........ ... +. .+ .....+ .+ +++.+.+.|+|||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~--t~-~~----~~~~~~---------~~---~~~~~~l~i~Dt~ 81 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV----YVP--TV-FE----NYIADI---------EV---DGKQVELALWDTA 81 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSS----CCC--SS-CC----CCEEEE---------EE---TTEEEEEEEECCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcc----cCC--cc-cc----eEEEEE---------EE---CCEEEEEEEEECC
Confidence 35799999999999999999976432111 000 00 00 000111 11 2345679999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccch--HHHHHHHHHc--CCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT--ERAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt--~~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
|+.+|.......++.+|++|+|+|+........ ..++..+... ++|+++|+||+|+..
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred CchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 999998888888999999999999987533322 2333444443 889999999999974
No 148
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.21 E-value=3.7e-11 Score=143.56 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=58.8
Q ss_pred eEEEEeeCCCccc-----------chHHHHHHhhhcCeEEEEeecCC-CcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 211 YLCNIMDSPGHVN-----------FSDEMTAALRLADGAVLIVDAAE-GVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 211 ~~inlIDTPGh~d-----------f~~ev~~alr~aD~ailVVDa~e-gv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..+++.+...+.|+++|+||+|+..
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 3689999999986 77788889999999999999988 6777888888888777889999999999973
No 149
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.21 E-value=1.3e-11 Score=129.41 Aligned_cols=119 Identities=22% Similarity=0.315 Sum_probs=82.3
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+....+|+++|+.|+|||||+++|+.... . ..+.. ..|++.......+ +++.+.++|+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~--~---------~~~~~------t~~~~~~~~~~~~-----~~~~~~~~i~ 69 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF--E---------KKYVA------TLGVEVHPLVFHT-----NRGPIKFNVW 69 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH--T---------CEEET------TTTEEEEEEEEEE-----TTEEEEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC--C---------CCCCC------ccceeEEEEEEEE-----CCEEEEEEEE
Confidence 34456899999999999999999653321 0 00111 1122332222221 3356789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHH-HHH--cCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRH-AIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~-~~~--~~ip~ilviNKiD~~~ 277 (989)
||||+..|.......++.+|++|+|+|+..+...+....|.. +.. .++|+++|+||+|+..
T Consensus 70 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp EECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred eCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 999999998888899999999999999998765544433333 222 2789999999999864
No 150
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.20 E-value=6.7e-11 Score=128.70 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+....... ....+ .|.......+.. +++.++|||
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~---~~~~~---------------~t~~~~~~~~~~-----~~~~l~iiD 93 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI---SPFQS---------------EGPRPVMVSRSR-----AGFTLNIID 93 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC---CSSSC---------------CCSSCEEEEEEE-----TTEEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc---cCCCC---------------cceeeEEEEEee-----CCeEEEEEE
Confidence 3456899999999999999999985432111 00111 111111112222 567899999
Q ss_pred CCCcccch---HHHHHHhh------hcCeEEEEeecCC-CcccchHHHHHHHHHc-C----CCEEEEEEccccc
Q 001965 218 SPGHVNFS---DEMTAALR------LADGAVLIVDAAE-GVMVNTERAIRHAIQE-R----LPIVVVVNKVDRL 276 (989)
Q Consensus 218 TPGh~df~---~ev~~alr------~aD~ailVVDa~e-gv~~qt~~~l~~~~~~-~----ip~ilviNKiD~~ 276 (989)
|||+.+|. ......++ .+|++|+|+|+.. ........+++.+... + .|+++|+||+|+.
T Consensus 94 TpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 94 TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred CCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 99998765 33333332 6899999988754 3444444556655432 2 6999999999986
No 151
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.20 E-value=9.1e-12 Score=128.45 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=59.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCC--ceEEEEee
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSK--SYLCNIMD 217 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~--~~~inlID 217 (989)
..+|+++|+.|+|||||+++|+....... . .+ ...+.+......+.+ ++. .+.+.|+|
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~---~------~~--------~~t~~~~~~~~~~~~---~~~~~~~~~~l~D 79 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFL---K------DY--------AMTSGVEVVVAPVTI---PDTTVSVELFLLD 79 (208)
T ss_dssp EEEEEEC---------------------------------------------------CEEEEC---TTSSEEEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCccc---C------CC--------CCccceEEEEEEEEE---CCcccEEEEEEEE
Confidence 34799999999999999999975411111 0 00 000111111112222 223 67899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH------cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ------ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~------~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+.++...... ..+..+.. .++|+++|+||+|+..
T Consensus 80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 999999998888889999999999999886543332 33333333 4789999999999874
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.4e-11 Score=124.15 Aligned_cols=112 Identities=18% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|+.|+|||||+++|+....... ... ...+++. . .....+.|+|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-----------~~~-----~~~~~~~-------~-----~~~~~~~l~D 97 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------VVS-----QEPLSAA-------D-----YDGSGVTLVD 97 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------------------C-----CCCTTCSEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-----------ccc-----CCCceee-------e-----ecCCeEEEEE
Confidence 3456899999999999999999975432110 000 0001111 0 1345688999
Q ss_pred CCCcccchHHHHHHhhh----cCeEEEEeecCCCccc--chHHHHHHHH-------HcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRL----ADGAVLIVDAAEGVMV--NTERAIRHAI-------QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~----aD~ailVVDa~egv~~--qt~~~l~~~~-------~~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++. +|++|+|+|+...... .....+..+. ..++|+++|+||+|+..
T Consensus 98 t~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 98 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp ETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred CCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 99999887666666665 8999999999822111 1112222221 14789999999999974
No 153
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.20 E-value=1e-11 Score=128.43 Aligned_cols=113 Identities=20% Similarity=0.335 Sum_probs=72.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
.+..+|+++|+.|+|||||+++|.... .. .+..+ +......+.+ ++..++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~--~~----------~~~~t----------~~~~~~~~~~-----~~~~l~i~D 75 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDR--LG----------QHVPT----------LHPTSEELTI-----AGMTFTTFD 75 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------------------CC----------CCCSCEEEEE-----TTEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC--CC----------ccCCC----------CCceeEEEEE-----CCEEEEEEE
Confidence 344579999999999999999995321 11 00000 0001112222 347899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHH----HcCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAI----QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~----~~~ip~ilviNKiD~~~ 277 (989)
|||+..|.......++.+|++|+|+|+.+...... ...+..+. ..++|+++|+||+|+..
T Consensus 76 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 76 LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp ECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 99999988877788999999999999987643222 22233332 25789999999999864
No 154
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.20 E-value=2.9e-11 Score=126.44 Aligned_cols=115 Identities=22% Similarity=0.218 Sum_probs=63.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|+...- . . .+..+.. ... ...+.+ +++.+.++|+|||
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~--~---~------~~~~t~~------~~~---~~~~~~---~~~~~~l~l~Dt~ 90 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF--P---E------SYTPTVF------ERY---MVNLQV---KGKPVHLHIWDTA 90 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC------------------CCCCC------EEE---EEEEEE---TTEEEEEEEEEC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--C---C------CCCCccc------eeE---EEEEEE---CCEEEEEEEEECC
Confidence 45799999999999999999974321 1 0 0000000 000 001111 3355679999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHH--cCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
|+.+|.......++.+|++|+|+|+......... ..+..+.. .++|+++|+||+|+..
T Consensus 91 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 91 GQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp --------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred CchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 9999998888899999999999999876543332 22333332 3789999999999974
No 155
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.19 E-value=1.5e-12 Score=134.33 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=76.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
.+...+|+++|+.|+|||||+++|+...... . ...+++.......+.+ +++.+.++|+
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------~--------~~~~~~~~~~~~~~~~---~~~~~~~~i~ 87 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-----------S--------YISTIGVDFKIRTIEL---DGKTIKLQIW 87 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCC-----------H--------HHHHHCCSEEEEEEEE---TTEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCC-----------C--------cCCcccceEEEEEEEE---CCEEEEEEEE
Confidence 3456789999999999999999985321100 0 0011111111112222 3345679999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH-HHHHH---cCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI-RHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l-~~~~~---~~ip~ilviNKiD~~~ 277 (989)
||||+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp CCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred ECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 9999999988888899999999999999986544333333 33332 2689999999999863
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.17 E-value=2.8e-11 Score=126.07 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=78.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|..|+|||||+++|+...... .+..+. +.... ..+. .+++.+.+.|+|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-----------~~~~t~------~~~~~---~~~~---~~~~~~~l~i~D 82 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------NYVPTV------FENYT---ASFE---IDTQRIELSLWD 82 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------SCCCCS------EEEEE---EEEE---SSSSEEEEEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CcCCcc------ceeEE---EEEE---ECCEEEEEEEEe
Confidence 345679999999999999999997642210 000000 11110 1111 134567899999
Q ss_pred CCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHH--cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
|||+.+|.......++.+|++|+|+|+......... ..+..+.. .++|+++|+||+|+..
T Consensus 83 t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 999999988777888999999999999875433332 22233333 3789999999999863
No 157
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.17 E-value=7.9e-12 Score=127.49 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=76.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|.... .. .+..+ .+.+. ..+.+ +++.++++||
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~--~~----------~~~~t------~~~~~----~~~~~-----~~~~~~~~Dt 73 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD--VV----------TTVPT------VGVNL----ETLQY-----KNISFEVWDL 73 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC--CE----------EECSS------TTCCE----EEEEE-----TTEEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--CC----------CcCCC------CceEE----EEEEE-----CCEEEEEEEC
Confidence 45679999999999999999995321 11 00000 01111 11222 4678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.+.-.... ...+..+.. .++|+++|+||+|+..
T Consensus 74 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 74 GGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp CCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred CCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 9999988777778899999999999987643222 222333332 3789999999999964
No 158
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.16 E-value=4e-11 Score=125.55 Aligned_cols=115 Identities=16% Similarity=0.210 Sum_probs=78.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|..++|||||+++|+...-... +..+. +.+.. ..+. .+++.+.+.|+|||
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-----------~~~t~------~~~~~---~~~~---~~~~~~~l~i~Dt~ 83 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------YVPTV------FENYT---ACLE---TEEQRVELSLWDTS 83 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------CCCCS------EEEEE---EEEE---C--CEEEEEEEEEC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------cCCee------eeeEE---EEEE---ECCEEEEEEEEECC
Confidence 34699999999999999999976432110 00110 11110 0111 13356789999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccch--HHHHHHHHHc--CCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT--ERAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt--~~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
|+..|.......++.+|++|+|+|+........ ...+..+... ++|+++|+||+|+..
T Consensus 84 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999998888889999999999999998654433 2233444333 789999999999973
No 159
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=119.40 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=73.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|..|+|||||+++|+...-. . .+..+. +.+.. . .+.+ +++.+.+.|+||
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~----------~~~~t~------~~~~~-~--~~~~---~~~~~~l~i~Dt 76 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-S----------EYDPNL------EDTYS-S--EETV---DHQPVHLRVMDT 76 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-S----------CCCTTC------CEEEE-E--EEEE---TTEEEEEEEEEC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-c----------ccCCCc------cceee-E--EEEE---CCEEEEEEEEEC
Confidence 3457999999999999999999864311 0 000000 01110 0 1111 335677999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH------cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ------ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~------~~ip~ilviNKiD~~~ 277 (989)
||+..|.. +...++.+|++|+|+|+.......... .+..+.. .++|+++|+||+|+..
T Consensus 77 ~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 77 ADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp CC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred CCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 99998865 467889999999999998654333222 2233322 4889999999999864
No 160
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.16 E-value=4.7e-11 Score=132.55 Aligned_cols=115 Identities=13% Similarity=0.201 Sum_probs=77.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|.+|+|||||+++|+....... ... .+.|+......+.+ . +++.++|+||||
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~---~~~---------------~~~Ti~~~~~~~~~---~-~~~~l~i~Dt~G 61 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFD---TRR---------------LGATIDVEHSHLRF---L-GNMTLNLWDCGG 61 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGG---GGG---------------CCCCCSEEEEEEEE---T-TTEEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc---ccC---------------cCCccceEEEEEEe---C-CceEEEEEECCC
Confidence 3699999999999999999975422221 000 11122111112222 1 367899999999
Q ss_pred cccc-----hHHHHHHhhhcCeEEEEeecCCCcccchHHHHH----HHHH--cCCCEEEEEEcccccc
Q 001965 221 HVNF-----SDEMTAALRLADGAVLIVDAAEGVMVNTERAIR----HAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df-----~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~----~~~~--~~ip~ilviNKiD~~~ 277 (989)
+.+| .......++.+|++|+|+|+...........|. .+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp SHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred cHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 9998 445667778999999999999876544443332 2221 2789999999999874
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.15 E-value=7.2e-11 Score=129.68 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=54.7
Q ss_pred ceEEEEeeCCCcc-------------cchHHHHHHhhhcCeEE-EEeecCCCcccchH-HHHHHHHHcCCCEEEEEEccc
Q 001965 210 SYLCNIMDSPGHV-------------NFSDEMTAALRLADGAV-LIVDAAEGVMVNTE-RAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 210 ~~~inlIDTPGh~-------------df~~ev~~alr~aD~ai-lVVDa~egv~~qt~-~~l~~~~~~~ip~ilviNKiD 274 (989)
...++||||||+. .+...+..+++.+|.+| +|+|+..+...+.. .+++.+...+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 3579999999974 34556677888898777 69999998877764 467777777899999999999
Q ss_pred ccc
Q 001965 275 RLI 277 (989)
Q Consensus 275 ~~~ 277 (989)
+..
T Consensus 204 l~~ 206 (299)
T 2aka_B 204 LMD 206 (299)
T ss_dssp GSC
T ss_pred cCC
Confidence 974
No 162
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.14 E-value=1.6e-10 Score=117.90 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=73.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+|+|..|+|||||+++|+...-... .. .+ .. ... ..+.+ +++.+.+.|+|||
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~------~~-----~t-~~------~~~---~~~~~---~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQE------ES-----PE-GG------RFK---KEIVV---DGQSYLLLIRDEG 75 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCC------CC-----TT-CE------EEE---EEEEE---TTEEEEEEEEECS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC------cC-----CC-cc------eEE---EEEEE---CCEEEEEEEEECC
Confidence 34699999999999999999975432110 00 00 00 000 11112 3355678999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~ 276 (989)
|+..|. .++.+|++|+|+|+.+....+. ...+..+.. .++|+++|.||+|+.
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999887 7889999999999998665444 333444433 467999999999985
No 163
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.14 E-value=1.2e-10 Score=117.16 Aligned_cols=108 Identities=10% Similarity=0.207 Sum_probs=71.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|..|+|||||+++|+...-.. +..+......+. +.+ +++...++|+|||
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~------------~~~t~~~~~~~~---------~~~---~~~~~~l~i~Dt~ 62 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV------------LEKTESEQYKKE---------MLV---DGQTHLVLIREEA 62 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC------------CSSCSSSEEEEE---------EEE---TTEEEEEEEEECS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC------------cCCCcceeEEEE---------EEE---CCEEEEEEEEECC
Confidence 3469999999999999999997643210 000000011111 111 2345678999999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HH---HH---cCCCEEEEEEccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HA---IQ---ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~---~~---~~ip~ilviNKiD~~ 276 (989)
|+.. ...++.+|++|+|+|+.+.........|. .+ .. .++|+++|+||+|+.
T Consensus 63 G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 63 GAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp SSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred CCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9987 35788999999999998765444333321 22 22 368999999999984
No 164
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.75 E-value=4e-12 Score=131.58 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=78.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+++|+.|+|||||+++|+...- .. . .. .+..+. . ...+. .++..+.+.|+||
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~--~-~~--~t~~~~----------~---~~~~~---~~~~~~~l~i~Dt 85 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PG--E-YI--PTVFDN----------Y---SANVM---VDGKPVNLGLWDT 85 (204)
Confidence 345699999999999999999964321 10 0 00 000000 0 00111 1234567889999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchH--HHHHHHHHc--CCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE--RAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~--~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.++...... .++..+... ++|+++|+||+|+..
T Consensus 86 ~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 86 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 99999998888999999999999999876554443 233333333 789999999999873
No 165
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.12 E-value=9.7e-11 Score=127.73 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=74.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|++|+|||||+++|........ . . .|+|+......+ +. +..++|+|||
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~---~-~---------------pg~tv~~~~~~~-----~~-~~~l~l~Dtp 57 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG---N-W---------------PGVTVERKSGLV-----KK-NKDLEIQDLP 57 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC---S-S---------------SCCCCSCEEEEC-----TT-CTTEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc---C-C---------------CCCcEEEEEEEE-----ec-CCeEEEEECC
Confidence 45799999999999999999964321110 0 0 122222111111 22 4569999999
Q ss_pred Ccccch------HHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 220 GHVNFS------DEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~------~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|+..|. ......++ .+|++|+|+|++.. .....++.++...++|+++|+||+|+..
T Consensus 58 G~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 58 GIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp CCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred CcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 999885 22334454 59999999999863 2233445566678999999999999863
No 166
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.08 E-value=2e-10 Score=135.86 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=79.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
+..+|+|+|.+|+|||||+++|+....... . . .++.+. ..+.+ +++.++|+||
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-------~-----~------T~~~~~----~~~~~-----~~~~~~l~Dt 373 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-------I-----P------TVGFNV----ETVTY-----KNVKFNVWDV 373 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC-------C-----C------CSSEEE----EEEES-----SSCEEEEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc-------C-----C------ccceeE----EEEEe-----CCEEEEEEEC
Confidence 346899999999999999999976431100 0 0 112221 11222 5678999999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH-HHHHHHH----cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER-AIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~-~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
||+..|......+++.+|++|+|+|+.......... .+..+.. .++|+|||+||+|+..
T Consensus 374 ~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 374 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp CCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 999999988888999999999999999864433322 2223322 4789999999999864
No 167
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.08 E-value=5.4e-10 Score=137.14 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=55.0
Q ss_pred eEEEEeeCCCccc---chHHHHHHhhhcCeEEEEeecCCCcccchHHHHH-HHHHcCCCEEEEEEccccccc
Q 001965 211 YLCNIMDSPGHVN---FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR-HAIQERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 211 ~~inlIDTPGh~d---f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~-~~~~~~ip~ilviNKiD~~~~ 278 (989)
..++||||||+.+ ....+...++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 3599999999865 4455668889999999999999988777776665 445568899999999999743
No 168
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=118.65 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=75.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|..|+|||||+++|......... .. +...|+ ..+ .+.+ +++.+.+.++||
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----~~--~~~~~~----~~~---------~~~~---~~~~~~l~i~Dt 79 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAH----EP--ENPEDT----YER---------RIMV---DKEEVTLVVYDI 79 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGG----TT--TSCTTE----EEE---------EEEE---TTEEEEEEEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccC----CC--Ccccce----EEE---------EEEE---CCEEEEEEEEec
Confidence 4457999999999999999999533222110 00 000111 011 1111 334567889999
Q ss_pred CCcccchH-HHHHHhhhcCeEEEEeecCCCcccch-HHHHHHHHH----cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSD-EMTAALRLADGAVLIVDAAEGVMVNT-ERAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~-ev~~alr~aD~ailVVDa~egv~~qt-~~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
||+..|.. .....++.+|++|+|+|+........ ...+..+.. .++|+++|.||+|+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99998765 45567889999999999986443222 222333332 3789999999999863
No 169
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.07 E-value=1.8e-10 Score=129.57 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=73.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
+.+|+++|.+|+|||||+++|......+. ++.. .|+......+.+. ....+.|+|||
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~-------------~~~f------tTl~p~~g~v~~~----~~~~~~l~DtP 214 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIA-------------DYHF------TTLVPNLGMVETD----DGRSFVMADLP 214 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEES-------------STTS------SCCCCCEEEEECS----SSCEEEEEEHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccc-------------cCCc------cccCceEEEEEeC----CCceEEEecCC
Confidence 55799999999999999999965432111 1100 0111111112221 23679999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCC----cccchHHHHHHHHH-----cCCCEEEEEEccccc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEG----VMVNTERAIRHAIQ-----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~eg----v~~qt~~~l~~~~~-----~~ip~ilviNKiD~~ 276 (989)
|+.+ +.....+.+..+|++|+|||++.. .......++..+.. .++|+++|+||+|+.
T Consensus 215 G~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 215 GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp HHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred CCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 9754 456667777889999999999752 12222334444444 368999999999987
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.06 E-value=1.3e-10 Score=117.99 Aligned_cols=109 Identities=23% Similarity=0.327 Sum_probs=66.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
.+|+++|+.|+|||||+++|+...-.. .... ++|.... .+.+ . .++++||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~---------------~~t~~~~--~~~~-----~--~~~l~Dt~G 53 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR----GKRP---------------GVTRKII--EIEW-----K--NHKIIDMPG 53 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS----SSST---------------TCTTSCE--EEEE-----T--TEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc----CCCC---------------CccceeE--EEec-----C--CEEEEECCC
Confidence 479999999999999999997542110 0011 1111111 1111 1 488999999
Q ss_pred c-----------ccchHHHHHHhhh-c---CeEEEEeecCCC-----------cccchHHHHHHHHHcCCCEEEEEEccc
Q 001965 221 H-----------VNFSDEMTAALRL-A---DGAVLIVDAAEG-----------VMVNTERAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 221 h-----------~df~~ev~~alr~-a---D~ailVVDa~eg-----------v~~qt~~~l~~~~~~~ip~ilviNKiD 274 (989)
+ ..|.......++. + ++++.|+|+... ...++..+++.+...++|+++|+||+|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (190)
T 2cxx_A 54 FGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLD 133 (190)
T ss_dssp BSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHh
Confidence 4 4455555555554 4 555566665431 222334455666677899999999999
Q ss_pred ccc
Q 001965 275 RLI 277 (989)
Q Consensus 275 ~~~ 277 (989)
+..
T Consensus 134 l~~ 136 (190)
T 2cxx_A 134 KIK 136 (190)
T ss_dssp GCS
T ss_pred ccC
Confidence 974
No 171
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.05 E-value=5.3e-10 Score=117.74 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=78.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
|.+--.|+|+|..++|||||+.+|+...- . ..| ...+.+......+. .++..+.+.|+
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f--~---------~~~--------~~Tig~d~~~k~~~---~~~~~v~l~iw 67 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF--D---------NTY--------QATIGIDFLSKTMY---LEDRTIRLQLW 67 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCC--C---------------------------CEEEEEE---CSSCEEEEEEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCC--C---------CCc--------CCccceEEEEEEEE---ecceEEEEEEE
Confidence 43334799999999999999999975321 1 000 01111111111111 23466789999
Q ss_pred eCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHH---HHcCCCEEEEEEcccccc
Q 001965 217 DSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHA---IQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 217 DTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~---~~~~ip~ilviNKiD~~~ 277 (989)
||+|+..|.......++.+|++|+|.|....-..... ..+..+ ...++|++||.||+|+..
T Consensus 68 DtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp CCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred ECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 9999999999999999999999999999875433322 222333 235689999999999864
No 172
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.03 E-value=9.4e-10 Score=124.62 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=71.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
....+|+++|++|+|||||+++|........ .. ...+ +.+.+ ..+.. .+..+.++|
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~---~~-~~~t-----------~~~~~----~~~~~-----~~~~~~l~D 220 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA---SY-PFTT-----------RGINV----GQFED-----GYFRYQIID 220 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE---CC-TTCS-----------SCEEE----EEEEE-----TTEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC---CC-CCee-----------eceeE----EEEEe-----cCceEEEEe
Confidence 4567899999999999999999964321110 00 0000 11111 11111 356799999
Q ss_pred CCCcccchH--------HHHHHh-hhcCeEEEEeecCCCc--ccch-HHHHHHHHH--cCCCEEEEEEcccccc
Q 001965 218 SPGHVNFSD--------EMTAAL-RLADGAVLIVDAAEGV--MVNT-ERAIRHAIQ--ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df~~--------ev~~al-r~aD~ailVVDa~egv--~~qt-~~~l~~~~~--~~ip~ilviNKiD~~~ 277 (989)
|||+.++.. ....++ ..+|++|+|+|+..+. .... ..++..+.. .++|+++|+||+|+..
T Consensus 221 t~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 221 TPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp CTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred CCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 999976421 222233 3589999999988753 2222 233444433 2789999999999873
No 173
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.03 E-value=2.7e-10 Score=116.00 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=71.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|..|+|||||+++|+....... +. + ....|+.+.. ..+.+....++...+.++||||+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~--~~-------~------~~t~g~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~ 66 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL--GM-------Q------SATVGIDVKD--WPIQIRDKRKRDLVLNVWDFAGR 66 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--------------------------CSEEEEE--EEC---------CEEEEEEECSH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC--CC-------c------ceeccEEeEE--eeeccccCCCCceEEEEEecCCC
Confidence 599999999999999999964211111 00 0 0001111111 11111111224678999999999
Q ss_pred ccchHHHHHHhhhcCeEEEEeecCCCc-ccc-hHHHHHHHHH--cCCCEEEEEEccccc
Q 001965 222 VNFSDEMTAALRLADGAVLIVDAAEGV-MVN-TERAIRHAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 222 ~df~~ev~~alr~aD~ailVVDa~egv-~~q-t~~~l~~~~~--~~ip~ilviNKiD~~ 276 (989)
..|.......++.+|++++|+|.+++. ... ....+..+.. .++|+++|.||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 67 EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 888777777889999999999998863 111 1222233322 378999999999986
No 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=6.1e-10 Score=126.40 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=73.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-+|+|+|+.|+|||||+++|+.... .. ..+.+....+..+++++......+.. .+....++++||||
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~-~~---------~~~~~~~~~~~~~ti~~~~~~~~~~~---~~~~~~l~i~DTpG 104 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL-YP---------ERVIPGAAEKIERTVQIEASTVEIEE---RGVKLRLTVVDTPG 104 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC-------------------------CEEEEEEEEC-------CEEEEEEEEC---
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC-CC---------CCcccCCCcccCCceeEEEEEEEeec---CCcccceEEEEecc
Confidence 4699999999999999999854321 11 01111111112233333322222222 22345799999999
Q ss_pred cccchH-------HHH-------HHhhhc-------------CeEEEEeec-CCCcccchHHHHHHHHHcCCCEEEEEEc
Q 001965 221 HVNFSD-------EMT-------AALRLA-------------DGAVLIVDA-AEGVMVNTERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 221 h~df~~-------ev~-------~alr~a-------------D~ailVVDa-~egv~~qt~~~l~~~~~~~ip~ilviNK 272 (989)
+.++.. .+. ..++.+ |+++++|+. ..+.......+++.+ ..++|+|+|+||
T Consensus 105 ~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK 183 (361)
T 2qag_A 105 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAK 183 (361)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEEC
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEEC
Confidence 955432 121 444443 357777776 566665555555554 467899999999
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeeccccccce
Q 001965 273 VDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWS 332 (989)
Q Consensus 273 iD~~~~el~l~p~~~~~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~ 332 (989)
+|+...+ + +....+++...+.... -.+...||+.|+.
T Consensus 184 ~Dl~~~~------e----v~~~k~~i~~~~~~~~-------------i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 184 ADTLTLK------E----RERLKKRILDEIEEHN-------------IKIYHLPDAESDE 220 (361)
T ss_dssp CSSSCHH------H----HHHHHHHHHHHTTCC--------------CCSCCCC------
T ss_pred CCCCCHH------H----HHHHHHHHHHHHHHCC-------------CCEEeCCCcCCCc
Confidence 9997321 1 2223345555544311 1256678888875
No 175
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.01 E-value=2.9e-10 Score=126.30 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=79.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+++|..|+|||||+++|+...- . .... .+.. ... ...+.. +++.+.++|+||
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~--~---~~~~------~t~~------~~~---~~~~~~---~~~~~~~~l~Dt 210 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF--P---GEYI------PTVF------DNY---SANVMV---DGKPVNLGLWDT 210 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC--C---CSCC------CCSE------EEE---EEEEEE---TTEEEEEEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC--C---cccC------Cccc------cee---EEEEEE---CCEEEEEEEEeC
Confidence 446799999999999999999975321 1 0000 0000 001 011111 335567889999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchHH--HHHHHHHc--CCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER--AIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~--~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
||+.+|.......++.+|++|+|+|+.+........ ++..+... ++|+++|+||+|+..
T Consensus 211 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp CCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred CCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 999999888888899999999999999865544432 23333333 789999999999863
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.01 E-value=9.8e-10 Score=124.58 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=52.2
Q ss_pred ceEEEEeeCCCcccc-------------hHHHHHHhhhcCeEEEEeecCC-Cc-ccchHHHHHHHHHcCCCEEEEEEccc
Q 001965 210 SYLCNIMDSPGHVNF-------------SDEMTAALRLADGAVLIVDAAE-GV-MVNTERAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 210 ~~~inlIDTPGh~df-------------~~ev~~alr~aD~ailVVDa~e-gv-~~qt~~~l~~~~~~~ip~ilviNKiD 274 (989)
...+.||||||..++ ...+..+++.+|++|+|||+.. .. ......+++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 446999999999887 5667788999999999998753 22 23334555555566889999999999
Q ss_pred ccc
Q 001965 275 RLI 277 (989)
Q Consensus 275 ~~~ 277 (989)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 974
No 177
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.98 E-value=5.5e-10 Score=125.78 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=61.1
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHH
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAY 288 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~ 288 (989)
.++.++||||||+.++...+ .+.+|++|+|+|+..|...+.... ...++|.++|+||+|+... .+
T Consensus 147 ~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~------~~-- 211 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNH------TN-- 211 (341)
T ss_dssp TTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCH------HH--
T ss_pred cCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCCh------HH--
Confidence 56789999999998876653 689999999999987754332211 1235699999999999731 11
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeecccccccee
Q 001965 289 HKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSF 333 (989)
Q Consensus 289 ~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~f 333 (989)
+..++++++..+...... ... + ...++..||+.|.++
T Consensus 212 --~~~~~~~l~~~l~~~~~~-~~~--~---~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 212 --VAIARHMYESALHILRRK-YDE--W---QPRVLTCSALEKRGI 248 (341)
T ss_dssp --HHHHHHHHHHHHHHSCCS-BTT--B---CCEEEECBGGGTBSH
T ss_pred --HHHHHHHHHHHHHhcccc-ccC--C---CCcEEEeeCCCCCCH
Confidence 233555666555432100 000 0 113567898888764
No 178
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.95 E-value=2.4e-10 Score=119.65 Aligned_cols=139 Identities=16% Similarity=0.136 Sum_probs=74.5
Q ss_pred HHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCC--CCCCcceeccCccceeeeeEEEEeeeeE--EE
Q 001965 127 TQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDP--NSEKHTRYTDTRIDEQERRISIKAVPMS--LV 202 (989)
Q Consensus 127 ~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~--~~~~~~~~~D~~~~E~~rgiti~~~~~~--~~ 202 (989)
.+.+..++. +.++++|+++|++|+|||||+++|+.......+.+. ...+ ...|....++ .|+++...... +.
T Consensus 18 ~~~~~~~~~-~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~-~~~~~~~~~~~~~~~ 93 (221)
T 2wsm_A 18 AEKNREALR-ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV--SKADYERVRR-FGIKAEAISTGKECH 93 (221)
T ss_dssp HHHHHHHHH-HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC--CHHHHHHHHT-TTCEEEECCCTTCSS
T ss_pred HHHHHHhhc-ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC--CchhHHHHHh-CCCcEEEecCCceee
Confidence 344444432 346789999999999999999999876321111000 0111 0011111111 12221110000 00
Q ss_pred eec------C-CCCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccc
Q 001965 203 LED------S-NSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDR 275 (989)
Q Consensus 203 ~~~------~-~~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~ 275 (989)
+.. . ...++.+.+|||||........ -..++.+++|+|+..+.. ..+..+...++|.++|+||+|+
T Consensus 94 ~~~~~~~~~~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 94 LDAHMIYHRLKKFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVAL 166 (221)
T ss_dssp CCHHHHHTTGGGGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGG
T ss_pred cccHHHHHHHHhcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccC
Confidence 000 0 1245679999999942110000 024688999999998742 2334444457899999999998
Q ss_pred c
Q 001965 276 L 276 (989)
Q Consensus 276 ~ 276 (989)
.
T Consensus 167 ~ 167 (221)
T 2wsm_A 167 A 167 (221)
T ss_dssp H
T ss_pred C
Confidence 6
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.94 E-value=2.6e-09 Score=121.26 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=70.5
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEee
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMD 217 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlID 217 (989)
..++.|+|+|++|+|||||+++|..... .. .. ..+.|.......+.+ .+..+.++|
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~-~~-----~~-------------~~~~T~d~~~~~i~~-----~g~~v~l~D 232 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KV-----DT-------------KLFTTMSPKRYAIPI-----NNRKIMLVD 232 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC------------------------------CCSCEEEEEE-----TTEEEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCc-cc-----cC-------------CcccccCCEEEEEEE-----CCEEEEEEe
Confidence 3467799999999999999999964321 10 00 011122221222333 346789999
Q ss_pred CCCcccc--------hHHHHHHhhhcCeEEEEeecCCCc--c-cchH---HHHHHHHHcCCCEEEEEEcccccc
Q 001965 218 SPGHVNF--------SDEMTAALRLADGAVLIVDAAEGV--M-VNTE---RAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 218 TPGh~df--------~~ev~~alr~aD~ailVVDa~egv--~-~qt~---~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|||+..- ...+...++.+|++++|+|++++. . .+.. .+++.+...++|+++|.||+|+..
T Consensus 233 T~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 233 TVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp CCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred CCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 9998431 123345678999999999998764 1 1221 222222235789999999999973
No 180
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.94 E-value=8.5e-10 Score=131.74 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=80.3
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeee----EEEeecCCCCceE
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM----SLVLEDSNSKSYL 212 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~----~~~~~~~~~~~~~ 212 (989)
+....+|+++|.+|+|||||+++|........ + ....|+++..... .+.. ..+++...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-----------~------~~t~g~~~~~~~~~~~~~v~~-~~~~~~~~ 99 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPK-----------E------SQTHGLNVVTKQAPNIKGLEN-DDELKECL 99 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------CCCEEEEEGGGSGGGTT-CSTTTTCE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------C------CCccceEEEEeccccccceee-cCCCceEE
Confidence 44456899999999999999999974321000 0 0001111111100 0001 11335688
Q ss_pred EEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--CCCEEEEEEcccccc
Q 001965 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--RLPIVVVVNKVDRLI 277 (989)
Q Consensus 213 inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip~ilviNKiD~~~ 277 (989)
++++||||+..|.......++.+|++|+|+|++.+ .....++..+... ++|+|+|+||+|+..
T Consensus 100 ~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 99999999999988888889999999999999875 3444555666554 489999999999864
No 181
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.93 E-value=1.5e-09 Score=111.89 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=76.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|+.|+|||||+++|........ ...+ .|+..... .+.+ +++...+.++|||
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~------~~~t-----------~~~~~~~~--~i~~---~g~~~~~~i~Dt~ 62 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE------SKST-----------IGVEFATR--SIQV---DGKTIKAQIWDTA 62 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---------CC-----------CSCEEEEE--EEEE---TTEEEEEEEEECS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC------CCCc-----------cceeEEEE--EEEE---CCEEEEEEEEECC
Confidence 45799999999999999999975432111 0000 01111111 1222 3345678899999
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
|+..|........+.+|++++|+|+......... ..+..+.. .+.|+++++||+|+..
T Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp SGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 9998877677788899999999999876543332 22333322 4679999999999864
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.93 E-value=1.4e-09 Score=122.92 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=49.6
Q ss_pred ceEEEEeeCCCccc-------------chHHHHHHhhhcC-eEEEEeecCCCcccchH-HHHHHHHHcCCCEEEEEEccc
Q 001965 210 SYLCNIMDSPGHVN-------------FSDEMTAALRLAD-GAVLIVDAAEGVMVNTE-RAIRHAIQERLPIVVVVNKVD 274 (989)
Q Consensus 210 ~~~inlIDTPGh~d-------------f~~ev~~alr~aD-~ailVVDa~egv~~qt~-~~l~~~~~~~ip~ilviNKiD 274 (989)
...++||||||... +...+...++.++ ++++|+|+..+...+.. .+++.+...+.|+++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 35699999999743 3344556665555 55557788777776665 367777777899999999999
Q ss_pred ccc
Q 001965 275 RLI 277 (989)
Q Consensus 275 ~~~ 277 (989)
+..
T Consensus 209 l~~ 211 (353)
T 2x2e_A 209 LMD 211 (353)
T ss_dssp GSC
T ss_pred ccC
Confidence 974
No 183
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.92 E-value=4e-09 Score=109.18 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=71.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
-.+|+++|+.|+|||||+++|+.... .. . +. ...|.+..... +.+. + .+.++|||
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~-~~---~-------~~------~~~G~~~~~~~--~~~~-----~-~~~l~Dt~ 80 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKS-LA---R-------TS------KTPGRTQLINL--FEVA-----D-GKRLVDLP 80 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC------------------------------CCEEE--EEEE-----T-TEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-cc---c-------cc------CCCccceeeEE--EEec-----C-CEEEEECc
Confidence 34699999999999999999853220 00 0 00 01122211111 1121 1 47899999
Q ss_pred Ccccc----------hHHHHHH---hhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 220 GHVNF----------SDEMTAA---LRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 220 Gh~df----------~~ev~~a---lr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|+..+ ...+... .+.+|++++|+|+..+.......+.+.+...++|++++.||+|++.
T Consensus 81 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 81 GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 98542 2222222 3578999999999988766666677777788999999999999873
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.91 E-value=1e-09 Score=124.24 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=63.2
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccccCCCchHHH
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAY 288 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~el~l~p~~~~ 288 (989)
.++.+.||||||... .....++.+|++|+|+|+..+...+... . ....+|.++|+||+|+...+ +
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~~~~------~-- 234 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGEHHK------E-- 234 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGGGHH------H--
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCcChh------H--
Confidence 467899999999654 3334468999999999988765443321 1 11235999999999997321 1
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCceEEcCCCCceeecccccccee
Q 001965 289 HKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSF 333 (989)
Q Consensus 289 ~~l~~ii~~in~~l~~~~~~~~~~~~~~P~~gnV~f~Sa~~g~~f 333 (989)
.....++++..+....+.. . . ....|++.||+.|.++
T Consensus 235 --~~~~~~~l~~~l~~~~~~~-~--~---~~~~vi~iSA~~g~Gi 271 (355)
T 3p32_A 235 --ARLAARELSAAIRLIYPRE-A--L---WRPPVLTMSAVEGRGL 271 (355)
T ss_dssp --HHHHHHHHHHHHHHHSTTC-C--S---CCCCEEEEBGGGTBSH
T ss_pred --HHHHHHHHHHHHhhccccc-c--C---CCCceEEEEcCCCCCH
Confidence 2335555665554321100 0 0 0123778899988653
No 185
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=3.4e-09 Score=111.09 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=71.1
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+|+|..|+|||||+++|+.....+. .... ....|+ ..+. +.+ ++..+.+.++||
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~---~~~~--~~g~d~----~~~~---------i~~---~~~~~~l~~~Dt 94 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMD---SDCE--VLGEDT----YERT---------LMV---DGESATIILLDM 94 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTC---CC-----CCTTE----EEEE---------EEE---TTEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC---CcCC--ccceee----EEEE---------EEE---CCeeeEEEEeec
Confidence 345799999999999999999974333221 0000 000011 0111 111 234566889999
Q ss_pred CCcccc-hHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH----cCCCEEEEEEcccccc
Q 001965 219 PGHVNF-SDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ----ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df-~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~----~~ip~ilviNKiD~~~ 277 (989)
+|.... ........+.+|++|+|+|+..--..... ..+..+.. .++|++||.||+|+..
T Consensus 95 ~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 95 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp TTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred CCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 998763 22223345778999999998864322222 22333332 3789999999999863
No 186
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.86 E-value=6.5e-09 Score=106.73 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=69.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
..+|+++|.+|+|||||+++|+.....+.. ... ....|+ ..+.+ .+ ++....+.++||+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~---~~~--~~~~~~----~~~~~---------~~---~~~~~~l~~~Dt~ 64 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS---DXE--VLGEDT----YERTL---------MV---DGESATIILLDMW 64 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-------G--GGCTTE----EEEEE---------EE---TTEEEEEEEECCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCc---ccc--ccceeE----EEEEE---------EE---CCeEEEEEEEEec
Confidence 356999999999999999999864433221 000 000111 01111 11 2345567899999
Q ss_pred Cccc-chHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH----cCCCEEEEEEccccc
Q 001965 220 GHVN-FSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 220 Gh~d-f~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~----~~ip~ilviNKiD~~ 276 (989)
|... +........+.+|++|+|+|+..--..... ..+..+.. .++|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 65 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp CC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred cCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 9765 222234467889999999999864332222 22233322 378999999999986
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=4e-09 Score=121.01 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=46.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeE---EEe--e-----cCC-CCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMS---LVL--E-----DSN-SKS 210 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~---~~~--~-----~~~-~~~ 210 (989)
+|+|+|++|+|||||+++|.... ... ...++.++ +...|+........ +.+ . ..+ .+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~---~~~p~tT~-------~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 70 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEI---ANYPFTTI-------EANVGVTYAITDHPCKELGCSPNPQNYEYRNGLAL 70 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Ccc---cCCCCccc-------CCceEEEeeccCCchHHhhhhcccccccccCCcce
Confidence 59999999999999999997543 111 00111010 11122210000000 000 0 001 123
Q ss_pred eEEEEeeCCCcccchH-------HHHHHhhhcCeEEEEeecCCC
Q 001965 211 YLCNIMDSPGHVNFSD-------EMTAALRLADGAVLIVDAAEG 247 (989)
Q Consensus 211 ~~inlIDTPGh~df~~-------ev~~alr~aD~ailVVDa~eg 247 (989)
..++|+||||+..+.. ....+++.+|++++|||+.++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 5799999999976422 122457899999999999876
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.79 E-value=1e-08 Score=105.19 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=76.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDT 218 (989)
...+|+|+|+.|+|||||+++|........ .. . .-+...... .+.+ +++...+.++||
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~------~~-----~------t~~~~~~~~--~i~~---~g~~~~~~i~Dt 85 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE------SK-----S------TIGVEFATR--SIQV---DGKTIKAQIWDT 85 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCS------CC-----C------CCSEEEEEE--EEEE---TTEEEEEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC------CC-----C------ccceEEEEE--EEEE---CCEEEEEEEEEC
Confidence 345799999999999999999975432111 00 0 011111111 2222 234456778999
Q ss_pred CCcccchHHHHHHhhhcCeEEEEeecCCCcccchH-HHHHHHHH---cCCCEEEEEEcccccc
Q 001965 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE-RAIRHAIQ---ERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~-~~l~~~~~---~~ip~ilviNKiD~~~ 277 (989)
||+..|...+...++.+|++++|+|.......... ..++.+.. .+.|+++++||+|+..
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99998887777888899999999998865432222 22232322 3679999999999864
No 189
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.77 E-value=9.3e-09 Score=116.61 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=76.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSP 219 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTP 219 (989)
.-.|+|+|.+|+|||||+|+|......+. . .+. .|+......+.+ .+..+.|+|||
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~---~-~pf---------------tT~~~~~g~~~~-----~~~~i~l~D~p 127 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAA---E-YEF---------------TTLVTVPGVIRY-----KGAKIQMLDLP 127 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGG---G-TCS---------------SCCCEEEEEEEE-----TTEEEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCccc---C-CCC---------------ceeeeeeEEEEe-----CCcEEEEEeCC
Confidence 34699999999999999999964322111 1 111 122222223333 56789999999
Q ss_pred Cccc-------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH-----cCCCEEEEEEcccccccc
Q 001965 220 GHVN-------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ-----ERLPIVVVVNKVDRLITE 279 (989)
Q Consensus 220 Gh~d-------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~-----~~ip~ilviNKiD~~~~e 279 (989)
|.+. ....+.+.++.||++++|||+.+.+.. .+.+...+.. .+.|.++++||+|+...+
T Consensus 128 Gl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~ 198 (376)
T 4a9a_A 128 GIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGGIS 198 (376)
T ss_dssp GGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEE
T ss_pred CccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhh
Confidence 9865 334577899999999999999976422 2222233332 245899999999986543
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.75 E-value=1.9e-08 Score=122.94 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=53.8
Q ss_pred eEEEEeeCCCccc-------------chHHHHHHh-hhcCeEEEEeecCCCcccchH-HHHHHHHHcCCCEEEEEEcccc
Q 001965 211 YLCNIMDSPGHVN-------------FSDEMTAAL-RLADGAVLIVDAAEGVMVNTE-RAIRHAIQERLPIVVVVNKVDR 275 (989)
Q Consensus 211 ~~inlIDTPGh~d-------------f~~ev~~al-r~aD~ailVVDa~egv~~qt~-~~l~~~~~~~ip~ilviNKiD~ 275 (989)
..+.|+||||... +...+..++ ..+|.+++|||+..+...+.. .+++.+...+.|+|+|+||+|+
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDl 229 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 229 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTS
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCccc
Confidence 4689999999754 222333444 478999999999999888877 7888888889999999999999
Q ss_pred cc
Q 001965 276 LI 277 (989)
Q Consensus 276 ~~ 277 (989)
+.
T Consensus 230 v~ 231 (772)
T 3zvr_A 230 MD 231 (772)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 191
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.74 E-value=1.4e-08 Score=112.75 Aligned_cols=111 Identities=17% Similarity=0.274 Sum_probs=71.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|.++|..|+|||||+.++.... ... . ..++ +.|+......+ + +...++||||||+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~~--~----~~~~----------~~Tig~~~~~v-----~-~~v~LqIWDTAGQ 56 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QPL--D----TLYL----------ESTSNPSLEHF-----S-TLIDLAVMELPGQ 56 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CSG--G----GTTC----------CCCCSCCCEEE-----C-SSSCEEEEECCSC
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CCC--c----ccee----------cCeeeeeeEEE-----c-cEEEEEEEECCCc
Confidence 38899999999999998764221 110 0 0000 01111111111 1 2367999999999
Q ss_pred ccchH---HHHHHhhhcCeEEEEeecCCCcccchHHHHHH----HH--HcCCCEEEEEEcccccc
Q 001965 222 VNFSD---EMTAALRLADGAVLIVDAAEGVMVNTERAIRH----AI--QERLPIVVVVNKVDRLI 277 (989)
Q Consensus 222 ~df~~---ev~~alr~aD~ailVVDa~egv~~qt~~~l~~----~~--~~~ip~ilviNKiD~~~ 277 (989)
.+|.. .....+|.++++|+|+|+.+. .......|+. +. ..++|+++|+||+|+..
T Consensus 57 Erf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 57 LNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp SSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred hhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 99964 457789999999999999986 3333333322 22 24789999999999973
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.70 E-value=2.7e-08 Score=107.19 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=29.1
Q ss_pred hcCeEEEEeecCCC--cccch-HHHHHHH----HHcCCCEEEEEEccccc
Q 001965 234 LADGAVLIVDAAEG--VMVNT-ERAIRHA----IQERLPIVVVVNKVDRL 276 (989)
Q Consensus 234 ~aD~ailVVDa~eg--v~~qt-~~~l~~~----~~~~ip~ilviNKiD~~ 276 (989)
.||++|+|+|+... ..... ...+..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 32222 1222222 23578999999999985
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.65 E-value=1.2e-07 Score=107.05 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=38.5
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.|+||||...-. ......+|++++|+|+..|...+. ++. .....|.++|+||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcCCEEEEeeecCC
Confidence 45679999999965332 234678999999999988743221 111 12356999999999996
No 194
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.61 E-value=2e-08 Score=118.01 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=72.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCc--------c-ceeeeeEEEEeeeeE-----E--
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTR--------I-DEQERRISIKAVPMS-----L-- 201 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~--------~-~E~~rgiti~~~~~~-----~-- 201 (989)
.+.++|+|+|+.|+|||||+++|...... .|.... .--.|.. . .....++.+...... +
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~---~G~kVl--lVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~ 173 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR---KGWKTC--LICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIAS 173 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEE--EEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEE--EEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHH
Confidence 45779999999999999999999854211 011000 0000110 0 001122332211000 0
Q ss_pred -EeecCCCCceEEEEeeCCCccc----chHHHHHHhh--hcCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEcc
Q 001965 202 -VLEDSNSKSYLCNIMDSPGHVN----FSDEMTAALR--LADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKV 273 (989)
Q Consensus 202 -~~~~~~~~~~~inlIDTPGh~d----f~~ev~~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKi 273 (989)
.+......++.+.||||||+.. +..++....+ .+|.+++|||+..|.. ....++.... .+|+ ++|+||+
T Consensus 174 ~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~ 250 (504)
T 2j37_W 174 EGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKL 250 (504)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECT
T ss_pred HHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCC
Confidence 0000111567899999999873 4444443333 7899999999999853 3333333332 2785 9999999
Q ss_pred ccc
Q 001965 274 DRL 276 (989)
Q Consensus 274 D~~ 276 (989)
|..
T Consensus 251 D~~ 253 (504)
T 2j37_W 251 DGH 253 (504)
T ss_dssp TSC
T ss_pred ccc
Confidence 986
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.60 E-value=1.7e-07 Score=107.86 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=67.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
..|+|+|++|+|||||+++|......+. ++... |+......+.+. ....++++||||
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~-------------~~~ft------Tl~p~~G~V~~~----~~~~~~l~DtpG 214 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA-------------PYPFT------TLSPNLGVVEVS----EEERFTLADIPG 214 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC-------------CCTTC------SSCCEEEEEECS----SSCEEEEEECCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc-------------Ccccc------eecceeeEEEec----CcceEEEEeccc
Confidence 4589999999999999999954322111 11000 000011112221 135689999999
Q ss_pred ccc-------chHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH-----cCCCEEEEEEccccc
Q 001965 221 HVN-------FSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ-----ERLPIVVVVNKVDRL 276 (989)
Q Consensus 221 h~d-------f~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~-----~~ip~ilviNKiD~~ 276 (989)
+.+ +.....+.+..+|.++.|+|+......+.....+++.. .+.|.++++||+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 854 33344556678999999999971111112222233222 357999999999987
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.50 E-value=1.4e-07 Score=101.16 Aligned_cols=67 Identities=19% Similarity=0.134 Sum_probs=46.0
Q ss_pred ceEEEEeeCCCcccchH------HHHHHhhhcCeEEEEeecCCCcccchHH-H----HHHHHHcCCCEEEEEEcccccc
Q 001965 210 SYLCNIMDSPGHVNFSD------EMTAALRLADGAVLIVDAAEGVMVNTER-A----IRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~------ev~~alr~aD~ailVVDa~egv~~qt~~-~----l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.+.+.||||||..++.. .+..++.. +++|+|||+..+....... . +......++|+++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 36799999999987642 23345555 8899999988665443322 1 1223345789999999999873
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=3.9e-07 Score=102.80 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=53.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC------------CCC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS------------NSK 209 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~------------~~~ 209 (989)
+|+|+|++|+|||||+++|....-... .... .|+......+.+.+. +..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~~~v~----~~p~---------------tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAGIEAA----NYPF---------------CTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC----------CC---------------CCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCccc----CCCC---------------ceECceEEEEecCCcccceeeeeeccccee
Confidence 599999999999999999976431111 0000 011100001111100 001
Q ss_pred ceEEEEeeCCCcccchH-------HHHHHhhhcCeEEEEeecCC
Q 001965 210 SYLCNIMDSPGHVNFSD-------EMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~-------ev~~alr~aD~ailVVDa~e 246 (989)
...++|+||||+..+.. .....++.+|++++|||+.+
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 24699999999998753 34567899999999999987
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.32 E-value=1.9e-06 Score=99.21 Aligned_cols=121 Identities=14% Similarity=0.263 Sum_probs=63.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
+|+|+|+.|+|||||+++|+....... |. .+ ... +.. ..+.+ ..+.+.++. .+....++++||||.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~--~~--~~-~~~-~~~-----~t~~~--~~i~~v~q~-~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSP--EY--PG-PSH-RIK-----KTVQV--EQSKVLIKE-GGVQLLLTIVDTPGF 98 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCC--CC--CS-CC-----------CCEE--EEEECC-------CEEEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCC--CC--CC-ccc-CCc-----cceee--eeEEEEEec-CCcccceeeeechhh
Confidence 589999999999999999964332111 10 00 000 000 00111 111222211 112346899999999
Q ss_pred ccchH------HHH--------HH-----------hhh--cCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEEEcc
Q 001965 222 VNFSD------EMT--------AA-----------LRL--ADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVVNKV 273 (989)
Q Consensus 222 ~df~~------ev~--------~a-----------lr~--aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilviNKi 273 (989)
..+.. .+. .. ++. ++++|++++.. .|+......+++.+. .++|+|+|+||+
T Consensus 99 ~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVinK~ 177 (418)
T 2qag_C 99 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIAKA 177 (418)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEEST
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEEcc
Confidence 76532 111 11 112 34566666665 688777767777765 489999999999
Q ss_pred cccc
Q 001965 274 DRLI 277 (989)
Q Consensus 274 D~~~ 277 (989)
|++.
T Consensus 178 Dll~ 181 (418)
T 2qag_C 178 DTLT 181 (418)
T ss_dssp TSSC
T ss_pred cCcc
Confidence 9873
No 199
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.30 E-value=4.1e-06 Score=91.01 Aligned_cols=122 Identities=14% Similarity=0.239 Sum_probs=71.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
|++|+|+.|+|||||+++|....... .|.....+... ......++++. ..+. .+-...++++|+||.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i---~~~~~~~~i~~-------v~q~-~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKI---PKTVEIKAIGH-------VIEE-GGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------C---CCCCSCCEEEE-------SCC-----CCEEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCccc---CcceeeeeeEE-------Eeec-CCCcCCceEEechhh
Confidence 79999999999999999997653211 11111110110 11111222322 1111 111235899999997
Q ss_pred ccch------HHH------------HH----------HhhhcCeEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEEEc
Q 001965 222 VNFS------DEM------------TA----------ALRLADGAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 222 ~df~------~ev------------~~----------alr~aD~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilviNK 272 (989)
.... ..+ .. ++..++++++++|.. +|+.+....+++.+... +++|+|+||
T Consensus 71 g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 71 GDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp -CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETT
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEec
Confidence 4311 011 11 112358889999954 89999999999888776 999999999
Q ss_pred ccccc
Q 001965 273 VDRLI 277 (989)
Q Consensus 273 iD~~~ 277 (989)
+|.+.
T Consensus 150 ~D~lt 154 (270)
T 3sop_A 150 ADTMT 154 (270)
T ss_dssp GGGSC
T ss_pred cccCC
Confidence 99984
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.27 E-value=3.8e-06 Score=92.75 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
-+|+|+|+.|+|||||+++|..... ...-| ....+..+. . ++....+.+..+ ..+....++++||||
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~~--------~--t~~~~~~~~~~q-~~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKIE--------R--TVQIEASTVEIE-ERGVKLRLTVVDTPG 85 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------------------CEEEEC----CCEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCcccC--------C--cceEeeEEEEec-CCCcccCcchhhhhh
Confidence 3689999999999999999864311 11101 000000000 0 111111122221 122345789999999
Q ss_pred c-------ccchHHHH-------HHhhhcC-------------eEEEEeecC-CCcccchHHHHHHHHHcCCCEEEEEEc
Q 001965 221 H-------VNFSDEMT-------AALRLAD-------------GAVLIVDAA-EGVMVNTERAIRHAIQERLPIVVVVNK 272 (989)
Q Consensus 221 h-------~df~~ev~-------~alr~aD-------------~ailVVDa~-egv~~qt~~~l~~~~~~~ip~ilviNK 272 (989)
+ ..|...+. ..++.+. .++++++.. .|+......+++.+. .++++++|+||
T Consensus 86 ~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K 164 (301)
T 2qnr_A 86 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAK 164 (301)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECC
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEe
Confidence 8 33332222 3333332 356666654 457776666666653 46799999999
Q ss_pred ccccc
Q 001965 273 VDRLI 277 (989)
Q Consensus 273 iD~~~ 277 (989)
.|+..
T Consensus 165 ~Dl~~ 169 (301)
T 2qnr_A 165 ADTLT 169 (301)
T ss_dssp GGGSC
T ss_pred CCCCC
Confidence 99873
No 201
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.26 E-value=5.1e-06 Score=95.43 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=77.6
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEe
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIM 216 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlI 216 (989)
+..+.|++|+|+.|+|||||++.|+... +. |... ....+....+++ .+.++.. +-...++++
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~--g~~~------~~~~~~~~~~~i-------~~v~Q~~-~l~~~ltv~ 100 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK--FE--GEPA------THTQPGVQLQSN-------TYDLQES-NVRLKLTIV 100 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC--C---------------CCSSCEEEEE-------EEEEEC---CEEEEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc--cc--CCcC------CCCCccceEeeE-------EEEeecC-ccccccchh
Confidence 4556789999999999999999997542 10 1100 000011111222 2222211 112358999
Q ss_pred eCCCcccch-------------H-HHHHHhh-------------hc--C-eEEEEeecCCCcccchHHHHHHHHHcCCCE
Q 001965 217 DSPGHVNFS-------------D-EMTAALR-------------LA--D-GAVLIVDAAEGVMVNTERAIRHAIQERLPI 266 (989)
Q Consensus 217 DTPGh~df~-------------~-ev~~alr-------------~a--D-~ailVVDa~egv~~qt~~~l~~~~~~~ip~ 266 (989)
||||..... . .....+. .+ | ++++|+|+.+|+......+++.+. .++|+
T Consensus 101 D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~v 179 (427)
T 2qag_B 101 STVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNI 179 (427)
T ss_dssp EEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEE
T ss_pred hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCE
Confidence 999986431 1 1111111 11 2 477789999999988888888876 78899
Q ss_pred EEEEEcccccccccCCCchHHHHHHHHHHHHHHHHhh
Q 001965 267 VVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHIS 303 (989)
Q Consensus 267 ilviNKiD~~~~el~l~p~~~~~~l~~ii~~in~~l~ 303 (989)
|+|+||+|.+. +.+ +....+.|+..+.
T Consensus 180 I~Vi~KtD~Lt------~~E----~~~l~~~I~~~L~ 206 (427)
T 2qag_B 180 IPIIAKADAIS------KSE----LTKFKIKITSELV 206 (427)
T ss_dssp EEEESCGGGSC------HHH----HHHHHHHHHHHHB
T ss_pred EEEEcchhccc------hHH----HHHHHHHHHHHHH
Confidence 99999999873 223 3445555665444
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.14 E-value=7.4e-07 Score=101.21 Aligned_cols=118 Identities=12% Similarity=0.195 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+++|.+|+|||||+|+|+....... . .... .....|.|....... + . ..+.++||||
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~-----~-~~~~------~~~~~gtT~~~~~~~--~---~---~~~~liDtPG 220 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET-----E-NVIT------TSHFPGTTLDLIDIP--L---D---EESSLYDTPG 220 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC-----S-SCCE------EECCC----CEEEEE--S---S---SSCEEEECCC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc-----c-ccee------cCCCCCeecceEEEE--e---c---CCeEEEeCCC
Confidence 5799999999999999999987532110 0 0000 011223343322221 1 1 1278999999
Q ss_pred cccch-------HHHHHH---hhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccccc
Q 001965 221 HVNFS-------DEMTAA---LRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 221 h~df~-------~ev~~a---lr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~ 278 (989)
..+.. .+.... .+..+.+++++++...+.......+.++...++|+++++||+|.+..
T Consensus 221 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 221 IINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp BCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred cCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence 86532 222222 35678899999985332111111123334567899999999999853
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.12 E-value=8.5e-06 Score=91.35 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=38.6
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.||||||...-.. .....+|.+++|+|+..|...+ .+.+.+ ..++.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~--~i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQ--GIKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHH--HHHHHH--hccccEEEEEchhcc
Confidence 467799999999865322 2347899999999987553211 000001 124778899999975
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.09 E-value=1.5e-06 Score=98.37 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=55.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEE----EeecCC-----CCce
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL----VLEDSN-----SKSY 211 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~----~~~~~~-----~~~~ 211 (989)
.+|+|+|++|+|||||+++|......+. . ... ++... ..|+. ....-.+ ...... ....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~---~-~p~-~Ti~p------n~g~~-~v~~~~l~~~~~~~~~~~~~~~~~~~ 69 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAA---N-YPF-ATIDK------NVGVV-PLEDERLYALQRTFAKGERVPPVVPT 69 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCS---S-CCG-GGGST------TEEEE-ECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCccc---C-CCC-ceecc------ceeeE-ecChHHHHHHHHHhcccccccccCCc
Confidence 3599999999999999999986531111 0 000 00000 01110 0000000 000000 0235
Q ss_pred EEEEeeCCCcccc-------hHHHHHHhhhcCeEEEEeecCCC
Q 001965 212 LCNIMDSPGHVNF-------SDEMTAALRLADGAVLIVDAAEG 247 (989)
Q Consensus 212 ~inlIDTPGh~df-------~~ev~~alr~aD~ailVVDa~eg 247 (989)
.+.|+||||...+ .......++.+|++++|||+.+.
T Consensus 70 ~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~ 112 (368)
T 2dby_A 70 HVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPD 112 (368)
T ss_dssp EEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCC
T ss_pred eEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCC
Confidence 6999999999875 34567789999999999999873
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.07 E-value=3.6e-07 Score=103.85 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPG 220 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPG 220 (989)
++|+++|.+|+|||||+|+|+........ . ....+ ..|.|..... +.+ ...++++||||
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~----~---~~~~~------~~gtT~~~~~--~~~------~~~~~liDtPG 221 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN----V---ITTSY------FPGTTLDMIE--IPL------ESGATLYDTPG 221 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC----C---CEEEE------CTTSSCEEEE--EEC------STTCEEEECCS
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc----c---eeecC------CCCeEEeeEE--EEe------CCCeEEEeCCC
Confidence 57999999999999999999875210000 0 00000 1111221111 111 11278999999
Q ss_pred cccch-------HHHHHHh---hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccccc
Q 001965 221 HVNFS-------DEMTAAL---RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLIT 278 (989)
Q Consensus 221 h~df~-------~ev~~al---r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~ 278 (989)
..+.. .+....+ +..|.+++++++...+.......+.++...++|+++++||+|.+..
T Consensus 222 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 222 IINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred cCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc
Confidence 86432 2233444 6789999999995332111111133344567899999999999853
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.06 E-value=3.3e-06 Score=96.19 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=47.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecC------------CC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDS------------NS 208 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~------------~~ 208 (989)
..|+|+|.+|+|||||+++|..... .. ... .+.|+......+.+.+. +.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~-~~---~~~---------------p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA-SA---ENF---------------PFCTIDPNESRVPVPDERFDFLCQYHKPASK 83 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC--------------------------------CCSEEEEECCCHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-cc---cCC---------------CccccCceeEEEEECCccceeeccccCcccc
Confidence 4599999999999999999964321 10 000 11122111111111110 00
Q ss_pred CceEEEEeeCCCcccchH-------HHHHHhhhcCeEEEEeecCC
Q 001965 209 KSYLCNIMDSPGHVNFSD-------EMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~-------ev~~alr~aD~ailVVDa~e 246 (989)
-...+.|+||||+..+.. .....++.+|++++|||+.+
T Consensus 84 ~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 134589999999988665 56788999999999999975
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.06 E-value=8.6e-07 Score=92.75 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=66.1
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCcccee--eeeEEEEeee-eEEE-------eecCC
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQ--ERRISIKAVP-MSLV-------LEDSN 207 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~--~rgiti~~~~-~~~~-------~~~~~ 207 (989)
.++++|+|+|+.|+|||||+++|+.......+............|....+. ...+.+.... ..+. +....
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 467899999999999999999998653211100000000000011100000 1122222110 0000 00011
Q ss_pred CCceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 208 SKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 208 ~~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
...+.+.++||+|....... .-...+..+.|+|+..+...... .....+.|.++|+||+|+..
T Consensus 116 ~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLAD 178 (226)
T ss_dssp GGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHH
T ss_pred cCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCc
Confidence 12346899999995321100 01234667888997655432211 11224679999999999863
No 208
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.05 E-value=7.9e-06 Score=94.56 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=43.9
Q ss_pred CceEEEEeeCCCcccchHHHHHHh------hhcCeEEEEeecCCCcccchHHHHHHHHHcCC-C-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAAL------RLADGAVLIVDAAEGVMVNTERAIRHAIQERL-P-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~al------r~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p-~ilviNKiD~~ 276 (989)
..+.+.||||||...........+ ..+|.+++|+|+..|. .....++. ....+ | ..+|+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 457799999999876543333322 2579999999999874 22222222 23346 6 88999999985
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.94 E-value=8.6e-06 Score=93.95 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=45.6
Q ss_pred CceEEEEeeCCCccc------chHHHHHHhhh--cCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVN------FSDEMTAALRL--ADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~d------f~~ev~~alr~--aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.||||||... +..++....+. .|.+++|+|+..|.. ...+.+.....--+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc
Confidence 467899999999754 45555543333 499999999998732 3334444443335788999999986
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.84 E-value=1.1e-05 Score=88.88 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=45.7
Q ss_pred CceEEEEeeCCCccc--chHHHH------HHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVN--FSDEMT------AALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~d--f~~ev~------~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
.+|.+.||||||... ....+. .++..+|.+++|+|+..| ..+...++.... ++| ..+++||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 467899999999887 443333 345678999999999865 233333433333 577 77899999975
No 211
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.84 E-value=1.1e-05 Score=93.26 Aligned_cols=134 Identities=18% Similarity=0.182 Sum_probs=71.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCC------CCcceeccCcc-ceeeeeEEEEeeee-----EE---E
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNS------EKHTRYTDTRI-DEQERRISIKAVPM-----SL---V 202 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~------~~~~~~~D~~~-~E~~rgiti~~~~~-----~~---~ 202 (989)
...++|+++|+.|+||||++..|....... .|... .......+... .....++.+-.... .+ .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK--HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT--SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 457899999999999999999997432111 01100 00000000000 01112333222110 00 0
Q ss_pred eecCCCCceEEEEeeCCCcccchHHHHHH------hhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEcccc
Q 001965 203 LEDSNSKSYLCNIMDSPGHVNFSDEMTAA------LRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDR 275 (989)
Q Consensus 203 ~~~~~~~~~~inlIDTPGh~df~~ev~~a------lr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~ 275 (989)
+......+|.+.||||||...+...+..+ +..+|.+++|+|+..|. .....++.. ..+++ .-+++||+|.
T Consensus 176 l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f-~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAF-NEALPLTGVVLTKVDG 252 (433)
T ss_dssp HHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHH-HHHSCCCCEEEECTTS
T ss_pred HHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHH-hccCCCeEEEEecCCC
Confidence 00111246789999999987765555443 33678999999998772 222222222 22455 3579999997
Q ss_pred c
Q 001965 276 L 276 (989)
Q Consensus 276 ~ 276 (989)
.
T Consensus 253 ~ 253 (433)
T 2xxa_A 253 D 253 (433)
T ss_dssp S
T ss_pred C
Confidence 5
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.82 E-value=8.1e-05 Score=85.89 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=42.6
Q ss_pred CceEEEEeeCCCcccchHHHH------HHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMT------AALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~------~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.++.+.||||||......+.. ..+..+|.+++|+||..|.. .....+.....--+..+++||+|..
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCc
Confidence 347899999999654333322 22334699999999998732 2233333333333567999999986
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.72 E-value=4.6e-05 Score=91.06 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=65.1
Q ss_pred cHHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeec
Q 001965 126 STQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLED 205 (989)
Q Consensus 126 ~~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 205 (989)
+.+-+.-+.....++..|+|+|.+|+|||||+|+|+.....+. .+ ++++ ...+|+.+-..+ +
T Consensus 24 ~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~-~~----~tt~-------~~T~gi~~~~~~----~-- 85 (592)
T 1f5n_A 24 NPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFS-LG----STVQ-------SHTKGIWMWCVP----H-- 85 (592)
T ss_dssp CHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSC-CC----CSSS-------CCCCSEEEEEEE----C--
T ss_pred CHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccc-cC----CCCC-------CceeEEEEeecc----c--
Confidence 3444433333456677899999999999999999976543221 11 1010 112333221111 1
Q ss_pred CCCCceEEEEeeCCCcccchH------HHHHHhhhcCeEEEEeecCCCcccchHHHHHHH
Q 001965 206 SNSKSYLCNIMDSPGHVNFSD------EMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259 (989)
Q Consensus 206 ~~~~~~~inlIDTPGh~df~~------ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~ 259 (989)
....+..+.||||||..+... ....++...-..++|+|+..++..+...++..+
T Consensus 86 ~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 86 PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHH
T ss_pred ccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHH
Confidence 112456799999999865322 122223332223788888888877776665554
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.70 E-value=7.2e-05 Score=85.24 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=55.8
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeE-EEEeeeeEEEeecCCCC---ceEE
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRI-SIKAVPMSLVLEDSNSK---SYLC 213 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgi-ti~~~~~~~~~~~~~~~---~~~i 213 (989)
..-..|+|+|++|+|||||+++|........ ...+. ...+ ...|. .+............+.+ ...+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~---~~~p~--tTi~-----p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i 87 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNP---ANYPY--ATID-----PEEAKVAVPDERFDWLCEAYKPKSRVPAFL 87 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTST---TCCSS--CCCC-----TTEEEEEECCHHHHHHHHHHCCSEEECEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc---cCCCc--eeec-----ceeeeeeeCCcchhhhhhhcccccccCcce
Confidence 3345699999999999999999976432111 00111 0001 01111 11000000000000000 1357
Q ss_pred EEeeCCCccc-------chHHHHHHhhhcCeEEEEeecCC
Q 001965 214 NIMDSPGHVN-------FSDEMTAALRLADGAVLIVDAAE 246 (989)
Q Consensus 214 nlIDTPGh~d-------f~~ev~~alr~aD~ailVVDa~e 246 (989)
.++||||... +.......++.+|+++.|+|+.+
T Consensus 88 ~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 88 TVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred EEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999754 45577888999999999999975
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.52 E-value=0.00017 Score=82.68 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=69.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcCcccccCCCCCCcceeccCccceeeeeEEEEeeeeEEEeecCCCCceEEEEeeCCCc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGH 221 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~~i~~~g~~~~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~inlIDTPGh 221 (989)
.|+|+|+.|+|||||+++|..... ...|+...++... .+ +++ .++.. ....++++|+||.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~------t~-~~~---------v~q~~--~~~~ltv~D~~g~ 130 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEV------TM-ERH---------PYKHP--NIPNVVFWDLPGI 130 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC----------C-CCE---------EEECS--SCTTEEEEECCCG
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeec------ce-eEE---------ecccc--ccCCeeehHhhcc
Confidence 799999999999999999975321 1112221111110 01 111 11111 1124889999996
Q ss_pred cc---chHHHHHHh--hhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccccc
Q 001965 222 VN---FSDEMTAAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITE 279 (989)
Q Consensus 222 ~d---f~~ev~~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~~e 279 (989)
.. -..+....+ ...|..++ +|... .+.|-..+.+.+...+.|+++|+||.|.+.++
T Consensus 131 ~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD 191 (413)
T 1tq4_A 131 GSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITN 191 (413)
T ss_dssp GGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccC
Confidence 42 123333332 33344444 66654 36677777788888899999999999998654
No 216
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.40 E-value=0.0002 Score=74.25 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=62.5
Q ss_pred CCCCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCE
Q 001965 486 PSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSW 565 (989)
Q Consensus 486 ~~~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnI 565 (989)
.++||.+.|..+|. .. +.+..|||.||++++||+|.++..+ ...+|.+|+.. ..++++|.|||.
T Consensus 3 ~~~p~rl~v~~v~~--g~-G~v~~G~v~~G~i~~Gd~v~i~P~~---------~~~~V~~I~~~----~~~~~~A~aGd~ 66 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DM-GTVVLGKLESGSICKGQQLVMMPNK---------HNVEVLGILSD----DVETDTVAPGEN 66 (204)
T ss_dssp ----CBEEEEEEEE--SS-SEEEEEECCBSCEESSCCEEETTTT---------EEEEEEEECSS----SSCBSEECTTSE
T ss_pred CCCCEEEEEEEEEc--CC-CEEEEEEEecCEEECCCEEEECCCC---------CEEEEEEEEEC----CEEeEEECCCCE
Confidence 35788888877775 23 4589999999999999999998654 56788888754 367899999999
Q ss_pred EEE--eeccc-eeeccceeec
Q 001965 566 VLI--EGVDA-SIMKSATLCN 583 (989)
Q Consensus 566 v~I--~Gld~-~~~k~~Tl~~ 583 (989)
|++ .|++. -+.+|++|++
T Consensus 67 V~l~L~gi~~~di~rG~vl~~ 87 (204)
T 3e1y_E 67 LKIRLKGIEEEEILPGFILCD 87 (204)
T ss_dssp EEEEEEESSSSCCCTTCEEBC
T ss_pred EEEEEcCCCHHHCccceEEEC
Confidence 999 78763 4567888887
No 217
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.38 E-value=6.7e-05 Score=84.48 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=54.4
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-----------ccchHHHHHHHHH----cCCCEEEEEEcc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-----------MVNTERAIRHAIQ----ERLPIVVVVNKV 273 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-----------~~qt~~~l~~~~~----~~ip~ilviNKi 273 (989)
++..+.++||+|+..|...+...++.++++|+|+|.++-- ......+++.+.. .++|+|||+||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 5678999999999999999999999999999999998731 2223344444433 468999999999
Q ss_pred ccc
Q 001965 274 DRL 276 (989)
Q Consensus 274 D~~ 276 (989)
|+.
T Consensus 271 DL~ 273 (353)
T 1cip_A 271 DLF 273 (353)
T ss_dssp HHH
T ss_pred Cch
Confidence 986
No 218
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.36 E-value=0.00044 Score=70.72 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=53.6
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc-----CCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE-----RLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~-----~ip~ilviNKiD~~ 276 (989)
..|.+.|||||+.. ...+..++..+|.+|+|+.....- ..+..+++.+... ++++.+|+||+|.-
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35889999999987 467788999999999999998776 7777777777654 46789999999954
No 219
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.22 E-value=0.00016 Score=80.79 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=53.5
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCC-----------CcccchHHHHHHHHH----cCCCEEEEEEcc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE-----------GVMVNTERAIRHAIQ----ERLPIVVVVNKV 273 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~e-----------gv~~qt~~~l~~~~~----~~ip~ilviNKi 273 (989)
++..+.++||+|+..|...+....+.++++|+|+|.++ .-.......|+.+.. .++|++||.||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 56789999999999999999999999999999999982 111223334444432 468999999999
Q ss_pred ccc
Q 001965 274 DRL 276 (989)
Q Consensus 274 D~~ 276 (989)
|+.
T Consensus 239 DL~ 241 (340)
T 4fid_A 239 DLF 241 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 986
No 220
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.18 E-value=0.00012 Score=82.58 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=47.2
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-----------ccchHHHHHHHHH----cCCCEEEEEEcc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-----------MVNTERAIRHAIQ----ERLPIVVVVNKV 273 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-----------~~qt~~~l~~~~~----~~ip~ilviNKi 273 (989)
++..+.|+||+|+..|.......++.++++|+|+|.++-- ......++..+.. .++|+|||+||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 5688999999999999998889999999999999998721 1223344444433 468999999999
Q ss_pred ccc
Q 001965 274 DRL 276 (989)
Q Consensus 274 D~~ 276 (989)
|+.
T Consensus 279 DL~ 281 (362)
T 1zcb_A 279 DLL 281 (362)
T ss_dssp HHH
T ss_pred hhh
Confidence 986
No 221
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.18 E-value=0.00041 Score=77.13 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=54.1
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecC-------CCcc----cchHHHHHHHHH----cCCCEEEEEEcc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAA-------EGVM----VNTERAIRHAIQ----ERLPIVVVVNKV 273 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~-------egv~----~qt~~~l~~~~~----~~ip~ilviNKi 273 (989)
++..+.++||+|+..|...+....+.++++|+|+|.+ +.-. ......++.+.. .++|++||+||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 5688999999999999988999999999999999876 2211 123334444432 468999999999
Q ss_pred cccccc
Q 001965 274 DRLITE 279 (989)
Q Consensus 274 D~~~~e 279 (989)
|+....
T Consensus 245 DL~~~k 250 (327)
T 3ohm_A 245 DLLEEK 250 (327)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 997533
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.13 E-value=0.001 Score=80.26 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=39.3
Q ss_pred eEEEEeeCCCcccc---------hHHHHHHh----hh-cCeEEEEeecCCCccc-chHHHHHHHHHcCCCEEEEEEcccc
Q 001965 211 YLCNIMDSPGHVNF---------SDEMTAAL----RL-ADGAVLIVDAAEGVMV-NTERAIRHAIQERLPIVVVVNKVDR 275 (989)
Q Consensus 211 ~~inlIDTPGh~df---------~~ev~~al----r~-aD~ailVVDa~egv~~-qt~~~l~~~~~~~ip~ilviNKiD~ 275 (989)
-.+.|+|.||...- ...+...+ +. ...+++++++...... ....+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 35899999985431 12222222 22 2566666776554432 2234555555567899999999999
Q ss_pred cc
Q 001965 276 LI 277 (989)
Q Consensus 276 ~~ 277 (989)
+.
T Consensus 227 v~ 228 (608)
T 3szr_A 227 VD 228 (608)
T ss_dssp SS
T ss_pred cC
Confidence 83
No 223
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.08 E-value=0.00029 Score=80.41 Aligned_cols=68 Identities=10% Similarity=0.203 Sum_probs=53.2
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCC----------Cc-ccchHHHHHHHHH----cCCCEEEEEEcc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE----------GV-MVNTERAIRHAIQ----ERLPIVVVVNKV 273 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~e----------gv-~~qt~~~l~~~~~----~~ip~ilviNKi 273 (989)
++..+.|+||+|+..|...+...++.++++|+|+|.++ -- .......++.+.. .++|++||.||+
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 45789999999999999999999999999999999986 11 1122333444433 367999999999
Q ss_pred ccc
Q 001965 274 DRL 276 (989)
Q Consensus 274 D~~ 276 (989)
|+.
T Consensus 295 DL~ 297 (402)
T 1azs_C 295 DLL 297 (402)
T ss_dssp HHH
T ss_pred hhh
Confidence 985
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.07 E-value=0.0005 Score=76.30 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=40.2
Q ss_pred CceEEEEeeCCCcccchHHHHHHhh------------hcCeEEEEeecCCCcccchHHHHHHHHHc--CCC-EEEEEEcc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALR------------LADGAVLIVDAAEGVMVNTERAIRHAIQE--RLP-IVVVVNKV 273 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr------------~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip-~ilviNKi 273 (989)
..|.+.||||||.....+....++. .+|.+++|+|+..| . ..+.++... .++ .=+++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHHHhhcCCCcEEEEeCC
Confidence 4678999999998765433332221 27899999999865 1 223333322 233 34789999
Q ss_pred ccc
Q 001965 274 DRL 276 (989)
Q Consensus 274 D~~ 276 (989)
|..
T Consensus 265 d~~ 267 (320)
T 1zu4_A 265 DST 267 (320)
T ss_dssp GGC
T ss_pred CCC
Confidence 974
No 225
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.94 E-value=0.00062 Score=74.88 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=49.7
Q ss_pred EEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcc-c-chHHHHHHHHHcCCCEEEEEEccccc
Q 001965 212 LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVM-V-NTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 212 ~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~-~-qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.+.++|| +..|......+++.+|++|+|+|+.+... . .....+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 5889999 88888777788999999999999997542 2 22334445556789999999999986
No 226
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.94 E-value=0.0039 Score=72.05 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=66.8
Q ss_pred cccHHHHHhhccC----CCCcceEEEEcCCCCChHHHHHHHHhhc---CcccccCCC---CCCcceeccCccceeeeeEE
Q 001965 124 YVSTQFLVGLMSN----PTLVRNVALVGHLHHGKTVFMDMLIEQT---HHMSTFDPN---SEKHTRYTDTRIDEQERRIS 193 (989)
Q Consensus 124 ~~~~~~l~~l~~~----~~~irnI~IiGh~~~GKTTL~~~Ll~~~---~~i~~~g~~---~~~~~~~~D~~~~E~~rgit 193 (989)
..+.+-+..++.. ..++-.|+|+|..++|||||+|.|+... +.....|.. ..+ ..+..+ ..-..+||-
T Consensus 47 ~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~-f~~~~t-~~~~T~GIw 124 (447)
T 3q5d_A 47 ELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTG-FSWRGG-SERETTGIQ 124 (447)
T ss_dssp EECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCS-SCSCCS-SCCCCCEEE
T ss_pred EECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccce-ecCCCC-CCCceeEEE
Confidence 3455666544432 4567789999999999999999998751 000000000 000 111111 111346665
Q ss_pred EEeeeeEEEeecCCCCceEEEEeeCCCcccchH-----HHHHHhhh--cCeEEEEeecCCCcccchHHHHH
Q 001965 194 IKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSD-----EMTAALRL--ADGAVLIVDAAEGVMVNTERAIR 257 (989)
Q Consensus 194 i~~~~~~~~~~~~~~~~~~inlIDTPGh~df~~-----ev~~alr~--aD~ailVVDa~egv~~qt~~~l~ 257 (989)
+...+.... ..++....+.|+||||..+-.. ..+.++.. ++..| +.....+.......+.
T Consensus 125 ~~~~p~~~~--~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~I--yN~~~~i~~~~l~~L~ 191 (447)
T 3q5d_A 125 IWSEIFLIN--KPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQ 191 (447)
T ss_dssp EESSCEEEE--CSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEE--EEESSSCCHHHHHHHH
T ss_pred EecCccccc--cCCCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHH--HhhcccccHHHHHHHH
Confidence 544433332 2234567899999999755332 23334443 66444 4444444444444443
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.92 E-value=0.00038 Score=80.11 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=40.3
Q ss_pred CceEEEEeeCCCcccchH----HHH--HHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSD----EMT--AALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~----ev~--~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
..|.+.||||||...... ++. ..+..+|.+++|+|+..| ......++... ..++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~-~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHH-HHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHH-hcCCceEEEEeCcCCc
Confidence 467799999999765432 221 122358999999999865 22222222222 2344 56789999974
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.82 E-value=0.0022 Score=69.89 Aligned_cols=61 Identities=26% Similarity=0.274 Sum_probs=45.0
Q ss_pred EeeCCCcc-cchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 215 IMDSPGHV-NFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 215 lIDTPGh~-df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+=+-|||. .+..++...+..+|+++.||||..+.......+-+.+ .++|.++|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 34579997 5778899999999999999999998776654443333 5789999999999973
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.72 E-value=0.0013 Score=76.72 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=38.0
Q ss_pred CceEEEEeeCCCcccc----hHH---HHHHhhh-----cCeEEEEeecCCCcccchHHHHHHHHH-cCCCEEEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNF----SDE---MTAALRL-----ADGAVLIVDAAEGVMVNTERAIRHAIQ-ERLPIVVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df----~~e---v~~alr~-----aD~ailVVDa~egv~~qt~~~l~~~~~-~~ip~ilviNKiD~ 275 (989)
.++.+.||||+|.... ..+ +.+.++. -+-++||+|+..|.. ....++.... .+ ...+++||+|.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~-itgvIlTKLD~ 450 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVG-LTGITLTKLDG 450 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTC-CSEEEEECGGG
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcC-CCEEEEEcCCC
Confidence 3456889999998532 222 2223331 356899999987732 1222333322 23 34678999997
Q ss_pred c
Q 001965 276 L 276 (989)
Q Consensus 276 ~ 276 (989)
.
T Consensus 451 t 451 (503)
T 2yhs_A 451 T 451 (503)
T ss_dssp C
T ss_pred c
Confidence 4
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.71 E-value=0.0012 Score=73.41 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=39.9
Q ss_pred ceEEEEeeCCCccc----chHHHHHH--hhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVN----FSDEMTAA--LRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~d----f~~ev~~a--lr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.+.+.++||+|... +..++... .-..|-.++|+|+..|. +....++...+.--..++++||+|..
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 34577899999743 33333322 22469999999988772 33333333332222458899999964
No 231
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00056 Score=77.00 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=51.0
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCC-------Cc----ccchHHHHHHHHH----cCCCEEEEEEcc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE-------GV----MVNTERAIRHAIQ----ERLPIVVVVNKV 273 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~e-------gv----~~qt~~~l~~~~~----~~ip~ilviNKi 273 (989)
+...+.|+||+|+..|........+.++++|+|+|.++ .- .......++.+.. .++|++||.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 46789999999999999999999999999999999872 11 1122333444432 468999999999
Q ss_pred cccc
Q 001965 274 DRLI 277 (989)
Q Consensus 274 D~~~ 277 (989)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9863
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.61 E-value=0.0016 Score=70.87 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...+|+++|.+|+|||||+|+|+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCceEEEEecCCCchHHHHHHHhcC
Confidence 3456999999999999999999754
No 233
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.61 E-value=0.0012 Score=72.85 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=21.1
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..+.|+|+|+.|+||||++..|...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3457999999999999999998643
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.56 E-value=0.003 Score=69.29 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=38.5
Q ss_pred CceEEEEeeCCCcccchHHHH----HHhh--hcCeEEEEeecCCCcccchHHHHHHHHHc-CC-CEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMT----AALR--LADGAVLIVDAAEGVMVNTERAIRHAIQE-RL-PIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~----~alr--~aD~ailVVDa~egv~~qt~~~l~~~~~~-~i-p~ilviNKiD~~ 276 (989)
.++.+.||||||......... ..++ ..|.+++|+|+..+.. .+.+.+... .+ ..-+++||+|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 456799999999876543322 2222 2578899999987631 222222221 12 235667999975
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.46 E-value=0.001 Score=72.95 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=39.2
Q ss_pred CceEEEEeeCCCcccchH----HHHHHh--hhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSD----EMTAAL--RLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~----ev~~al--r~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
..+.+.||||||...... ++.... ..+|.+++|+|+..+ ..+...++.... .++ .-+++||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 357799999998754422 222222 248999999998754 222222222221 244 45789999975
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.27 E-value=0.0045 Score=68.09 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=37.6
Q ss_pred eEEEEeeCCCcccchH----HHH---HHhh-----hcCeEEEEeecCCCcccchHHHHHHHHH-cCCCEEEEEEccccc
Q 001965 211 YLCNIMDSPGHVNFSD----EMT---AALR-----LADGAVLIVDAAEGVMVNTERAIRHAIQ-ERLPIVVVVNKVDRL 276 (989)
Q Consensus 211 ~~inlIDTPGh~df~~----ev~---~alr-----~aD~ailVVDa~egv~~qt~~~l~~~~~-~~ip~ilviNKiD~~ 276 (989)
+.+.++||+|...... +.. .++. ..+.+++++|+..|.. ....++...+ .+ ..++++||.|..
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~-~t~iivTh~d~~ 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVG-LTGVIVTKLDGT 260 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHC-CSEEEEECTTSS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcC-CcEEEEECCccc
Confidence 4567999999754322 221 1111 2467899999987743 2233333333 34 467899999875
No 237
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.25 E-value=0.012 Score=63.01 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=50.6
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHc--CCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE--RLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~--~ip~ilviNKiD~~ 276 (989)
..|.+.|||||+... ..+..++..||.+|+|+.+...-...+..+++.+... ++++.+|+|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 468899999999763 5677888999999999998765444555666666655 45888999999554
No 238
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.23 E-value=0.0035 Score=68.72 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=47.1
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH----cCCCEE-EEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ----ERLPIV-VVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~----~~ip~i-lviNKiD~ 275 (989)
..|.+.|||||+..... .+..++..||.+|+|+.+...-...+..+++.+.. .+++++ +|+||.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46889999999875432 23457889999999998775444555566666654 345555 89999984
No 239
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.07 E-value=0.003 Score=68.02 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+|+++|.+|+|||||+++|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 57999999999999999999754
No 240
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.07 E-value=0.0033 Score=67.72 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=39.8
Q ss_pred CCcccc-hHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 219 PGHVNF-SDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 219 PGh~df-~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
|||... ..++...+..+|++|.|+||..+.......+- .+ ++|+++|+||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC
Confidence 899754 46888999999999999999987765432221 12 889999999999973
No 241
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.87 E-value=0.012 Score=66.39 Aligned_cols=62 Identities=23% Similarity=0.052 Sum_probs=41.5
Q ss_pred EEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 213 inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+.-+++| +.+|........+.+|++|+|||+.+........+.+.+ .+.|+++|+||+|++.
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLP 112 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSC
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCC
Confidence 3344554 678888888888999999999999986544333333332 2779999999999974
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.80 E-value=0.0067 Score=66.60 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=37.0
Q ss_pred HHhhhcCeEEEEeecCCCc-ccc-hHHHHHHHHHcCCCEEEEEEccccc
Q 001965 230 AALRLADGAVLIVDAAEGV-MVN-TERAIRHAIQERLPIVVVVNKVDRL 276 (989)
Q Consensus 230 ~alr~aD~ailVVDa~egv-~~q-t~~~l~~~~~~~ip~ilviNKiD~~ 276 (989)
.+++.+|++++|+|+.+.. ... ..+.+..+...++|+++|+||+|+.
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 4689999999999999754 322 2345556667899999999999997
No 243
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=95.34 E-value=0.028 Score=58.13 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=91.8
Q ss_pred CeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeeccc
Q 001965 799 PIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVP 878 (989)
Q Consensus 799 Pv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~ 878 (989)
-+.||.+.+.-+- --+.-|+|-++-+-..++..|+..|+..-..+...+.|.|+...++.|...|.+..+.|++.+.
T Consensus 94 ~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y 170 (217)
T 1vi7_A 94 GVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDY 170 (217)
T ss_dssp TCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEe
Confidence 5788888876542 1233455667778889999999999999999999999999999999999999999999988765
Q ss_pred CCCCCceEEEEEccchhccchhHHHhhcCCccEEE
Q 001965 879 QPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFS 913 (989)
Q Consensus 879 ~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~ 913 (989)
.+ ...++..+|..+.-.|...|+..|+|++.+
T Consensus 171 ~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 171 QA---FVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp SS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred cC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 32 488899999999999999999999999843
No 244
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.13 E-value=0.034 Score=59.33 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=52.3
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEE-EEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIV-VVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~i-lviNKiD~ 275 (989)
..|.+.|||||+..........++..+|.+|+|+.........+...++.+.+.+++++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999976543333344557999999999887766677778888888888987 99999984
No 245
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.03 E-value=0.023 Score=64.08 Aligned_cols=55 Identities=18% Similarity=0.019 Sum_probs=39.0
Q ss_pred cccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEEEEEEcccccc
Q 001965 221 HVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 221 h~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
..+|........+.+|++|+|+|+.+.....-..+.+. ..++|+++|+||+|++.
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIP 110 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGSC
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcCC
Confidence 46788878788888999999999987432211122222 13789999999999974
No 246
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=94.77 E-value=0.067 Score=54.25 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=90.2
Q ss_pred CCeeeEEEEEEeeeecCCCcccCCCchHHHHHHHHHHHHhhcCCeeeeeeEEEEEEecccchhhHHHHHhccCceEeecc
Q 001965 798 EPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADV 877 (989)
Q Consensus 798 ePv~~v~~~l~d~~~s~~~~~~~~gqiip~~r~a~~~a~~~A~prLlEPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~ 877 (989)
.-+.||.+.+.-+- --+.-|+|-++-+-..++..|+..|+..-..+...+.|.|+...++.|...|.+.. .|++.+
T Consensus 81 ~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~ 156 (191)
T 2cve_A 81 QGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEET 156 (191)
T ss_dssp TTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEE
T ss_pred cCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccE
Confidence 46889988887653 12234455667777888999999999999999999999999999999999999888 887765
Q ss_pred cCCCCCceEEEEEccchhccchhHHHhhcCCccEEE
Q 001965 878 PQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFS 913 (989)
Q Consensus 878 ~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~ 913 (989)
..+. ...++..+|..+.-.|...|+.+|+|++.+
T Consensus 157 y~~~--gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 157 YTPE--GVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EETT--EEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EcCC--eEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 5321 178899999999999999999999999854
No 247
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.51 E-value=0.037 Score=62.17 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=37.6
Q ss_pred eEEEEeeCCCcccchHHHH-------HHhh-----hcCeEEEEeecCCCcccchHHHHHHHH-HcCCCEEEEEEccccc
Q 001965 211 YLCNIMDSPGHVNFSDEMT-------AALR-----LADGAVLIVDAAEGVMVNTERAIRHAI-QERLPIVVVVNKVDRL 276 (989)
Q Consensus 211 ~~inlIDTPGh~df~~ev~-------~alr-----~aD~ailVVDa~egv~~qt~~~l~~~~-~~~ip~ilviNKiD~~ 276 (989)
+...++||.|...+..... .++. ..+-++||+|+..|...... ++... ..++ .+++++|+|-.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~iiiThlD~~ 316 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTKLDGS 316 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEESCTTC
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEEEecCccc
Confidence 3467999999865433211 1111 24567999998877654432 23333 3344 46789999864
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.39 E-value=0.037 Score=60.68 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=38.0
Q ss_pred eEEEEeeCCCcccchHHHH-------HHhh-----hcCeEEEEeecCCCcccchHHHHHHHH-HcCCCEEEEEEccccc
Q 001965 211 YLCNIMDSPGHVNFSDEMT-------AALR-----LADGAVLIVDAAEGVMVNTERAIRHAI-QERLPIVVVVNKVDRL 276 (989)
Q Consensus 211 ~~inlIDTPGh~df~~ev~-------~alr-----~aD~ailVVDa~egv~~qt~~~l~~~~-~~~ip~ilviNKiD~~ 276 (989)
+...++||.|...+..... .++. ..+-++||+|+..|...... ++... ..++ .+++++|+|-.
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiThlD~~ 259 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTKLDGS 259 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEECCSSC
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeCCCCC
Confidence 3467999999865433221 1211 24566999998888655432 33333 3454 46788999864
No 249
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.26 E-value=0.3 Score=56.22 Aligned_cols=128 Identities=14% Similarity=0.183 Sum_probs=68.7
Q ss_pred cccHHHHHhhccC----CCCcceEEEEcCCCCChHHHHHHHHhhcC---cccccCCCC--CCcceeccCccceeeeeEEE
Q 001965 124 YVSTQFLVGLMSN----PTLVRNVALVGHLHHGKTVFMDMLIEQTH---HMSTFDPNS--EKHTRYTDTRIDEQERRISI 194 (989)
Q Consensus 124 ~~~~~~l~~l~~~----~~~irnI~IiGh~~~GKTTL~~~Ll~~~~---~i~~~g~~~--~~~~~~~D~~~~E~~rgiti 194 (989)
..+.+-+..+... ...+..|+|+|..++|||+|+|.|+...+ .....|... ..+..+..+. .-..+||-+
T Consensus 47 ~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~-~~~TkGIWm 125 (457)
T 4ido_A 47 ELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGS-ERETTGIQI 125 (457)
T ss_dssp EECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSS-SCCCCSEEE
T ss_pred EECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCC-CCcCceEEE
Confidence 4456666654332 46788999999999999999997764321 001111100 0111221111 223577777
Q ss_pred EeeeeEEEeecCCCCceEEEEeeCCCcccch-----HHHHHHhh--hcCeEEEEeecCCCcccchHHHH
Q 001965 195 KAVPMSLVLEDSNSKSYLCNIMDSPGHVNFS-----DEMTAALR--LADGAVLIVDAAEGVMVNTERAI 256 (989)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~inlIDTPGh~df~-----~ev~~alr--~aD~ailVVDa~egv~~qt~~~l 256 (989)
-+.++.+.. .++....+.|+||.|.-+-. +..+.|+. .|+..|+=+. ..+..+....+
T Consensus 126 w~~p~~~~~--~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~--~~i~~~~L~~L 190 (457)
T 4ido_A 126 WSEIFLINK--PDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLS--QNVQEDDLQHL 190 (457)
T ss_dssp ESSCEEEEC--TTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEE--SSCCHHHHHHH
T ss_pred ecCcccccC--CCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeeccc--ccCCHHHHHHH
Confidence 555544332 34566789999999975431 23344444 4665554443 33433433333
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.13 E-value=0.039 Score=60.43 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++++|+.|+|||||+++|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 251
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.48 E-value=0.065 Score=55.17 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=53.3
Q ss_pred CceEEEEeeCCCc-ccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH-cCCCEEEEEEccccc
Q 001965 209 KSYLCNIMDSPGH-VNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ-ERLPIVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh-~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~-~~ip~ilviNKiD~~ 276 (989)
..|.+.|||||+. .. ..+..++..||.+|+++.+...-...+...++.+.. .+.++.+++|++|..
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 4578999999997 54 356678999999999999887666667777777766 377899999999875
No 252
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.19 E-value=0.081 Score=56.28 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=42.5
Q ss_pred CceEEEEeeCCCcccchHH-HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH----cCCCE-EEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDE-MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ----ERLPI-VVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~e-v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~----~~ip~-ilviNKiD~ 275 (989)
..|.+.||||||......- .......||.+|+|+.+...-...+..+++.+.. .++++ -+++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 4588999999996532111 1112357999999999875444444455555543 24554 688999864
No 253
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.11 E-value=0.094 Score=55.56 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=51.6
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
..|.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+...+.+ .-+|+|++|..
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 357899999998765 6678889999999999998765555666777777666664 45899999864
No 254
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.01 E-value=0.21 Score=52.81 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=47.0
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH------cCCCEE-EEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ------ERLPIV-VVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~------~~ip~i-lviNKiD~~ 276 (989)
..|.+.|||||+... .....++..||.+|+|+.+...-...+..+++.+.. .+++++ +|+|+.|.-
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 568899999999765 345678889999999999876444444444444432 256664 899999864
No 255
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.89 E-value=0.1 Score=56.30 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=41.6
Q ss_pred CceEEEEeeCCCcccchHH-HHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH----cCCCE-EEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDE-MTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ----ERLPI-VVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~e-v~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~----~~ip~-ilviNKiD~ 275 (989)
..|.+.||||||......- .......||.+|+|+.+...-...+..+++.+.. .++++ -+++|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 4688999999996532111 1123367999999998765433444444444432 25563 578899863
No 256
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.84 E-value=0.13 Score=55.46 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=52.0
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEE-EEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIV-VVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~i-lviNKiD~~ 276 (989)
.|.+.|||||+..... .....++.+|++|+|+.+...-.......++.+.+.+++++ +|+|++|.-
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5779999999976543 23345578999999999988777777778888888888876 899999875
No 257
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.28 E-value=0.26 Score=53.22 Aligned_cols=66 Identities=21% Similarity=0.135 Sum_probs=48.9
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHH------cCCCE-EEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ------ERLPI-VVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~------~~ip~-ilviNKiD~~ 276 (989)
..|.+.|||||+.... ....++..||.+|+|+.+...-...+..+++.+.. .++++ -+|+|+.|.-
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 3578999999997653 45667888999999999887655555555555543 36674 4899999874
No 258
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.22 E-value=0.15 Score=52.99 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=52.1
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
..|.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+.+.+.+ .-+|+||.+..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 457899999999755 6678899999999999998765555667777777776664 56899999864
No 259
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.17 E-value=0.076 Score=58.07 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.++++|+.|+|||||+++|...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 5899999999999999999643
No 260
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.07 E-value=0.21 Score=54.49 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=53.0
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEE-EEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIV-VVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~i-lviNKiD~~ 276 (989)
.|.+.|||||+.....+ .....+.+|++|+|+.+...-.......++.+.+.+++++ +|+|++|.-
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 46799999999876543 3345578999999999988877888888888888888755 889999865
No 261
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.07 E-value=0.094 Score=54.71 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=50.9
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC-CEEEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL-PIVVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i-p~ilviNKiD~ 275 (989)
..|.+.|||||+.... .+..++..||.+|+|+.+...-...+..+.+.+...++ .+.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 5688999999997654 56778899999999999876545556666676667776 47899999984
No 262
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.02 E-value=0.13 Score=54.05 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=50.8
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcC---------CCEEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQER---------LPIVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~---------ip~ilviNKiD~~ 276 (989)
.|.+.|||||+... ..+..++..||.+|+|+.+...-...+..+++.+...+ ..+-+|+|+.|.-
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 68899999999654 57888999999999999987655556666666665443 4678999999864
No 263
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.00 E-value=0.081 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+++|+|+.|+|||||++.|....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999976543
No 264
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.86 E-value=0.046 Score=60.07 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..++|+|++|+|||||+++|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 3689999999999999999964
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.73 E-value=0.081 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.++|+|+.|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999754
No 266
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=91.69 E-value=0.82 Score=42.40 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=43.3
Q ss_pred CCeEEEEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEE
Q 001965 488 GPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVL 567 (989)
Q Consensus 488 ~pl~~~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~ 567 (989)
-|....|.+.+.--+ +....|||.+|+|++|+.| ++- + ...+|..|.. ...++++|.|||-|+
T Consensus 33 ~P~k~~ilp~~~~vF--gpvivGrVe~G~LK~G~~V----Pg~-----~--~vg~VkSIE~----~~e~v~eA~~GdnVa 95 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG--KDVIIGTVESGMIGVGFKV----KGP-----S--GIGGIVRIER----NREKVEFAIAGDRIG 95 (116)
T ss_dssp CSEEEEEEEEEEETT--EEEEEEEEEEEEEETTCEE----ECS-----S--CEEEEEEEEE----TTEEESEEETTCEEE
T ss_pred CcEEEEEEecCCeEE--CCeeEEEEeEEEEcCCCCc----CCC-----c--eEEEEEEEEE----CCcCcCCcCCCCEEE
Confidence 355555555222112 4477889999999999999 220 0 2445666654 456799999999998
Q ss_pred Ee
Q 001965 568 IE 569 (989)
Q Consensus 568 I~ 569 (989)
+.
T Consensus 96 i~ 97 (116)
T 1xe1_A 96 IS 97 (116)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 267
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.50 E-value=0.21 Score=54.18 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=52.6
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCC-EEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip-~ilviNKiD~~ 276 (989)
.|.+.|||||+.....+ .....+.||++|+|+.+...-.......++.+.+.+.+ +-+|+||+|.-
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 47799999999866543 44566789999999999877777777888888888876 46899999875
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.39 E-value=0.11 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+-++|+|++|+|||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999764
No 269
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.06 E-value=0.1 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+-++|+|+.|+|||||+++|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 34899999999999999999754
No 270
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.55 E-value=0.3 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=22.3
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..+++.|.|++|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999654
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.55 E-value=0.14 Score=50.10 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.|+|+|.+|+||||++..|....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999996543
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.50 E-value=0.12 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.-..|+|+|+.|+|||||++.|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999964
No 273
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.45 E-value=0.15 Score=55.89 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=36.7
Q ss_pred HhhhcCeEEEEeecCCCcccch--HHHHHHHHHcCCCEEEEEEcccccc
Q 001965 231 ALRLADGAVLIVDAAEGVMVNT--ERAIRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 231 alr~aD~ailVVDa~egv~~qt--~~~l~~~~~~~ip~ilviNKiD~~~ 277 (989)
+++.+|.+++|+|+.++..... .+.+..+...++|+++|+||+|+..
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 5889999999999997665443 3334444568999999999999973
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.37 E-value=0.13 Score=52.01 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.|+|+|+.|+|||||++.|...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999765
No 275
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.34 E-value=0.16 Score=51.69 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=22.7
Q ss_pred HhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 131 VGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 131 ~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
..+|.. ..-..|+|+|..|+|||||+..|....|
T Consensus 21 ~~~m~~-~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 21 QSMMTG-EPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HhhhcC-CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344542 2345799999999999999999976544
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.21 E-value=0.14 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-++|+|+.|+|||||+++|...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999754
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.16 E-value=0.17 Score=53.23 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 127 TQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 127 ~~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.+|...|+.. ...|+|+|+.|+|||||+..|...-+
T Consensus 17 ~~~~~~~~~~---~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 17 NLYFQSMASK---LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp ---------C---CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHHHHhcCC---CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444455433 35799999999999999999974434
No 278
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.12 E-value=0.15 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..|+|+|+.|+|||||++.|...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999653
No 279
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.08 E-value=0.24 Score=51.53 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=51.7
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCC---CEEEEEEccccc
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERL---PIVVVVNKVDRL 276 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~i---p~ilviNKiD~~ 276 (989)
.|.+.|||||+... .....++..||.+|+|+.....-...+..+++.+...+. .+-+|+|+.+.-
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 57899999999764 356778999999999999876656667777777776653 478999999865
No 280
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.03 E-value=0.2 Score=49.35 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
-..|+|+|.+|+|||||+..|....|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999975433
No 281
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.95 E-value=0.16 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
++|+|+|.+|+|||||+..|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 282
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.79 E-value=0.083 Score=61.51 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-.+|.++|.+|+||||+...|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999654
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.74 E-value=0.17 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.++++|+.|+|||||++.|...-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999997653
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.70 E-value=0.19 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..|+|+|++|+|||||++.|..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999964
No 285
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.69 E-value=0.71 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
..+-|.++|.+|+||||++..|....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999996543
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.53 E-value=0.17 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.++|+|+.|+|||||++.|...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999754
No 287
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.47 E-value=0.2 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+++.|+|+|+.|+|||||+.+|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999753
No 288
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.44 E-value=0.21 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
++-++|+|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567999999999999999999754
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.38 E-value=0.23 Score=50.04 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+..+|+|+|..|+||||++..|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999999654
No 290
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.34 E-value=0.85 Score=49.17 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=23.5
Q ss_pred cCCCCcc-eEEEEcCCCCChHHHHHHHHhh
Q 001965 135 SNPTLVR-NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 135 ~~~~~ir-nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..|.+.+ ++.+.|++|+|||||+.+|...
T Consensus 41 ~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 41 KDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 3455554 8999999999999999999654
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.18 E-value=0.21 Score=50.06 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhc
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.+.|+|+|.+|+||||++..|....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999996543
No 292
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.07 E-value=0.25 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhc
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
-+-|+|+|+.|+|||||+++|+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4569999999999999999998654
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.02 E-value=0.22 Score=48.40 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.|+|+|.+|+||||++..| ...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36999999999999999999 4433
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.94 E-value=0.2 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
|=|+|+|++|+|||||++.|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 448999999999999999998653
No 295
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.91 E-value=0.24 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+|+|+|.+|+||||++..|...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 296
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.87 E-value=0.21 Score=51.14 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhc
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
-+-|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3469999999999999999997653
No 297
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.81 E-value=0.19 Score=49.84 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
-++++|+.|+|||||+++++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999864
No 298
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.81 E-value=0.22 Score=51.85 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+-++|+|+.|+|||||+++|....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999997653
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.69 E-value=0.25 Score=50.04 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.+.|+|+|..|+|||||+..|....+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976543
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.68 E-value=0.23 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..|+|+|+.|+|||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999999654
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.32 E-value=0.23 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.+|+|+|..|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999964
No 302
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.31 E-value=0.14 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..|+|+|..|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999643
No 303
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.13 E-value=1.3 Score=45.40 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=44.0
Q ss_pred CceEEEEeeCCCcccc-----hHHHHHHhhhcCeEEEEeecCCCcccchHHHHHHHHHcCCCEE-EEEEccccc
Q 001965 209 KSYLCNIMDSPGHVNF-----SDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIV-VVVNKVDRL 276 (989)
Q Consensus 209 ~~~~inlIDTPGh~df-----~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~i-lviNKiD~~ 276 (989)
+.|.+.||||||...- .....-+....+.+|+|+.+..+-..++...++.+...+++++ +|+|++|.-
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 3578999999986531 1111112222346888888866555566666777777788855 889999864
No 304
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.12 E-value=0.22 Score=52.38 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 38999999999999999994
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.75 E-value=0.3 Score=49.50 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.++|+|+|.+|+||||+...|....+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999975543
No 306
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.74 E-value=0.24 Score=51.70 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999984
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.65 E-value=0.28 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++++|+.|+|||||+..|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999964
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.53 E-value=0.28 Score=49.98 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.|+|+|.+|+|||||++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999997654
No 309
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.49 E-value=0.26 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-++++++|++|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998653
No 310
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=87.48 E-value=0.32 Score=41.64 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=52.4
Q ss_pred EEEEEecccchhhHHHHHhccCceEeecccCCCCCceEEEEEccchhccchhHHHhhcCCccEEE
Q 001965 849 YVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFS 913 (989)
Q Consensus 849 ~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~iPv~esfgf~~dLRs~T~G~a~~ 913 (989)
...+.|+-..+|+|...|.+..+.|.+.+--. ...+...||..+.-.|...|+..|+|++.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 45788999999999999999999999866532 488999999999999999999999999843
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.46 E-value=0.31 Score=48.43 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhc
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.++|+++|.+|+||||+...|....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999996543
No 312
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.45 E-value=0.26 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..++|+|+.|+|||||++.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999953
No 313
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.44 E-value=0.26 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.079 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.++|+|+.|+|||||++.|...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 314
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=87.41 E-value=1.6 Score=48.51 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.5
Q ss_pred cCeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEccccc
Q 001965 235 ADGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKVDRL 276 (989)
Q Consensus 235 aD~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKiD~~ 276 (989)
.+++++|+-+..-....+++.+..+.+.++|+ -+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 47899999888777788899999999999987 6789998754
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.41 E-value=0.34 Score=49.27 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.4
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
......|+|+|.+|+|||||++.|...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344567999999999999999999653
No 316
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.36 E-value=0.38 Score=48.63 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.+.+.|+|.|..|+||||++..|....+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999975543
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.35 E-value=0.32 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.|+|.|.+|+||||++..|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 318
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.26 E-value=0.17 Score=54.62 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=45.0
Q ss_pred ceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCC----CcccchHH------------HH---HHHH----HcC-CC
Q 001965 210 SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE----GVMVNTER------------AI---RHAI----QER-LP 265 (989)
Q Consensus 210 ~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~e----gv~~qt~~------------~l---~~~~----~~~-ip 265 (989)
.|.+.|||||+.. ...+..++..||.+|+|+.+.. ++...... ++ +.+. ..+ ++
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 5779999999985 5678899999999999998753 22111111 12 3332 225 67
Q ss_pred EEEEEEccccc
Q 001965 266 IVVVVNKVDRL 276 (989)
Q Consensus 266 ~ilviNKiD~~ 276 (989)
+.+|+|++|.-
T Consensus 181 ~~vV~N~~~~~ 191 (286)
T 2xj4_A 181 WVVLRNRLATT 191 (286)
T ss_dssp EEEEEECCTTC
T ss_pred EEEEEeeecCC
Confidence 88999999875
No 319
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.07 E-value=0.32 Score=52.01 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..++|+|+.|+|||||++.|+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36999999999999999999753
No 320
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.00 E-value=0.29 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
++..++|+|..|+|||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999865
No 321
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.96 E-value=0.26 Score=51.81 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 322
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.91 E-value=1.6 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
..+.+.|.|++|+|||||+.+|....
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999997654
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.87 E-value=0.31 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
++|+|+|..|+||||++..|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999953
No 324
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.84 E-value=2 Score=46.93 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...++|.|.|.+|+|||+|+.++...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999999544
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.83 E-value=0.3 Score=53.68 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.-..|+|+|+.|+|||||++.|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345799999999999999999864
No 326
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=86.78 E-value=0.77 Score=47.52 Aligned_cols=64 Identities=8% Similarity=0.078 Sum_probs=35.9
Q ss_pred EEEeeCC------CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHHH----HHHH----cCCCEEEEEEcc-ccc
Q 001965 213 CNIMDSP------GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR----HAIQ----ERLPIVVVVNKV-DRL 276 (989)
Q Consensus 213 inlIDTP------Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l~----~~~~----~~ip~ilviNKi-D~~ 276 (989)
+..--+| |+..+..........+|++|+|||+.+.-......-++ .+.. .++|++|+.||. |..
T Consensus 98 ~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 98 MFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp -------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred cccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 4455566 66666677888999999999999998753323433332 2211 467999999996 564
No 327
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.72 E-value=0.29 Score=52.12 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999994
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.70 E-value=0.33 Score=47.72 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+.|+|+|.+|+||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 329
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.63 E-value=0.3 Score=51.09 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999994
No 330
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.58 E-value=0.39 Score=49.68 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.+.|+|+|.+|+||||++..|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999975443
No 331
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.57 E-value=0.3 Score=52.25 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 332
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.50 E-value=0.32 Score=51.62 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999954
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.49 E-value=0.47 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+-++|+|+|.+|+||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999765
No 334
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.49 E-value=0.31 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999953
No 335
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.38 E-value=0.35 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..++|+|+.|+|||||++.|+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 46999999999999999999754
No 336
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.34 E-value=0.42 Score=47.08 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.|.++|.+|+||||+...|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999997654
No 337
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.31 E-value=0.35 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
++|+|+|.+|+||||+...|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999654
No 338
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.28 E-value=0.32 Score=51.24 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 339
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.28 E-value=0.31 Score=52.23 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 38999999999999999994
No 340
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.27 E-value=0.35 Score=49.02 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.++|+|+.|+|||||+..|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999998754
No 341
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.20 E-value=0.32 Score=51.48 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 342
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.20 E-value=0.33 Score=50.33 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 001965 143 VALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll 161 (989)
++|+|+.|+|||||++.|.
T Consensus 38 ~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999999999994
No 343
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.19 E-value=0.32 Score=52.46 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999994
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.16 E-value=0.39 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+|+|.|..|+||||++..|...-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 59999999999999999996543
No 345
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.04 E-value=0.37 Score=50.58 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.|+|+|+.|+|||||++.|...-|
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 499999999999999999976444
No 346
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.95 E-value=0.34 Score=51.76 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999953
No 347
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.94 E-value=0.35 Score=50.24 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||+.+|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 348
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.88 E-value=0.38 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-.+++|+|+.|+|||||+.++...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 349
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.88 E-value=0.35 Score=54.19 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.++|+|+.|+|||||+++|+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 5899999999999999999743
No 350
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.68 E-value=0.35 Score=51.76 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 48999999999999999994
No 351
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.62 E-value=0.27 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCChHHHHHHHH
Q 001965 141 RNVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll 161 (989)
..|+|+|+.|+|||||++.|.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999997
No 352
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.56 E-value=0.44 Score=47.18 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.1
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
..++|+|+|.+|+||||++..|....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997543
No 353
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.56 E-value=0.37 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999953
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.49 E-value=0.4 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
-++|+|+.|+|||||+..|..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 355
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.43 E-value=0.47 Score=53.08 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 129 FLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 129 ~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+.++...+.. .|+|+|+.|+|||||+++|+..
T Consensus 114 ~l~~l~~~~~g--~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 114 VFKRVSDVPRG--LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHHHHHHCSSE--EEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCC--EEEEECCCCCCHHHHHHHHHhc
Confidence 45555544433 7999999999999999999753
No 356
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.42 E-value=0.37 Score=51.37 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 357
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.40 E-value=0.37 Score=51.12 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 38999999999999999994
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.23 E-value=0.41 Score=47.28 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=17.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.+.|.|.|.+|+||||++..|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999965433
No 359
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.20 E-value=0.38 Score=51.48 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 38999999999999999994
No 360
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.12 E-value=1.2 Score=49.81 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=30.9
Q ss_pred HhhhcCeEEEEeecCCCcccchHHH---HHHHHHcCCCEEEEEEcccccc
Q 001965 231 ALRLADGAVLIVDAAEGVMVNTERA---IRHAIQERLPIVVVVNKVDRLI 277 (989)
Q Consensus 231 alr~aD~ailVVDa~egv~~qt~~~---l~~~~~~~ip~ilviNKiD~~~ 277 (989)
.+..+|.+++| |+... ......+ +..+...++|++||+||+|+..
T Consensus 127 i~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EEECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HHhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 35788998876 55543 3333333 3444668999999999999973
No 361
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.10 E-value=0.39 Score=51.61 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 362
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=85.04 E-value=1.9 Score=38.84 Aligned_cols=66 Identities=20% Similarity=0.139 Sum_probs=48.9
Q ss_pred EEEeeeccCCCCceeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 493 NVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 493 ~V~K~~~~~~~~~~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
.|-.++..+.. +.+|-++|.+|+++.+..+++++.+- -...-++..|- |.+..|.++.+|.=|+|.
T Consensus 10 eVr~vF~isk~-g~IAGc~V~~G~i~r~~~vRv~Rd~~------vI~eG~i~SLk----r~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 10 EVRQTFKVSKV-GTIAGCYVTDGKITRDSKVRLIRQGI------VVYEGEIDSLK----RYKDDVREVAQGYECGLT 75 (99)
T ss_dssp EECCCCCCSSS-CCCEEEEECSSBCCSSSEEEEECSSS------EEEEEECSEEE----CSSSCCSCCBTTCEEEEE
T ss_pred EEEEEEEcCCc-eEEEEEEEEcCEEEcCCeEEEEECCE------EEEEeEEhhhc----ccccccceECCCcEEEEE
Confidence 34444545544 45999999999999999999998652 12233455543 788899999999999985
No 363
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.95 E-value=0.51 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+|+|+|.+|+||||++..|...-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999975543
No 364
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.95 E-value=0.49 Score=47.92 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-..|+|+|..|+|||||+..|...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998654
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.94 E-value=0.38 Score=53.90 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+++|+|+.|+|||||+++|+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999753
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.91 E-value=0.48 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+|+|.|.+|+||||++..|...-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999965443
No 367
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.90 E-value=0.4 Score=51.78 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 38999999999999999994
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.88 E-value=0.45 Score=47.16 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.|+|.|.+|+||||++..|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 369
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.87 E-value=2.1 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999754
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.77 E-value=0.6 Score=47.37 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=21.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHh
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+.+-..|+|+|..|+|||||++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999999864
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=84.73 E-value=0.56 Score=51.71 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
....-|+|+|+.|+|||||+.+|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44557999999999999999998643
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.73 E-value=0.36 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+++|+|+.|+|||||+++|+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999643
No 373
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.71 E-value=0.41 Score=50.89 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 374
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.65 E-value=0.5 Score=46.83 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.+|+++|.+|+||||++..|....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999997543
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=84.49 E-value=0.59 Score=50.75 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=21.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHh
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+.+...|+|+|.+|+|||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998864
No 376
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.17 E-value=0.48 Score=51.78 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..-..|+|+|+.|+|||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33456999999999999999999653
No 377
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=84.16 E-value=0.61 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.|+++|.+|+||||++..|....
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999996543
No 378
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.14 E-value=1.4 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.013 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.-.+|.|.|.+|+|||+|+.++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998543
No 379
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.05 E-value=0.56 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.|+|.|.+|+||||++..|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999975433
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.92 E-value=0.54 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
-.+|+|+.|+|||||+++|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997643
No 381
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.89 E-value=3.1 Score=41.48 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..+++.|.|.+|+|||+|+..+...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998653
No 382
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.84 E-value=0.93 Score=44.28 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...+++.|.|.+|+|||||+.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999754
No 383
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.81 E-value=0.46 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+|+|+|+.|||||||+++|+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999643
No 384
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.75 E-value=2.8 Score=45.33 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..++|.|.|++|+|||+|+.++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999654
No 385
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.73 E-value=0.6 Score=45.58 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+.||+|.|..|+||||+...|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999654
No 386
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.49 E-value=1.7 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.+.|.|++|+|||||+.+++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.47 E-value=0.61 Score=46.63 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.|+|+|.+|+||||++..|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976533
No 388
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.47 E-value=0.47 Score=51.52 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 48999999999999999994
No 389
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=83.42 E-value=4 Score=45.33 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=33.4
Q ss_pred CeEEEEeecCCCcccchHHHHHHHHHcCCCE-EEEEEccccc
Q 001965 236 DGAVLIVDAAEGVMVNTERAIRHAIQERLPI-VVVVNKVDRL 276 (989)
Q Consensus 236 D~ailVVDa~egv~~qt~~~l~~~~~~~ip~-ilviNKiD~~ 276 (989)
+++++|+-+..-....+.+.++.+.+.++|+ -+|+|++.-.
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 5788888877766778888999999999976 6889998753
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.41 E-value=0.63 Score=49.17 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
..|+|+|+.|+|||||+..|...-|
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999974433
No 391
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.36 E-value=0.76 Score=45.51 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhc
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.+.|+|.|.+|+||||++..|....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999996543
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.35 E-value=0.6 Score=45.60 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.|+|.|.+|+||||++..|....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999996543
No 393
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.32 E-value=0.7 Score=48.55 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=22.7
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+..+|+|+|.+|+||||++..|...-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999975443
No 394
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.26 E-value=0.77 Score=46.32 Aligned_cols=28 Identities=25% Similarity=0.116 Sum_probs=22.8
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.....|+|+|.+|+||||++..|....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444579999999999999999997543
No 395
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.24 E-value=0.62 Score=49.34 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999976544
No 396
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.20 E-value=0.53 Score=50.39 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999994
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.15 E-value=0.58 Score=52.67 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+|+|+|+.|+|||||+++|+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999753
No 398
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.14 E-value=0.66 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.|+|.|..|+||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999643
No 399
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.03 E-value=0.69 Score=47.46 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
..+|+++|.+|+||||++..|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999975433
No 400
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.01 E-value=0.76 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-+.|+|.|..|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999653
No 401
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.98 E-value=0.84 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-..|+++|..|+||||++..|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998654
No 402
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.87 E-value=0.67 Score=47.62 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.++|+|+|.+|+||||++..|...-+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999976543
No 403
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.87 E-value=0.65 Score=46.83 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+.|+|.|.+|+||||++..|...-
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999999997543
No 404
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.74 E-value=0.38 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.+||+|+.|+|||||++.|..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 489999999999999999953
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.67 E-value=0.62 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+|+|+|.+|+||||+...|....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999996543
No 406
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=82.63 E-value=0.58 Score=52.49 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||+++|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 389999999999999999953
No 407
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.56 E-value=0.92 Score=43.33 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCChHHHHHHHH
Q 001965 140 VRNVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll 161 (989)
-++|.|.|.+|+|||+++.++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4579999999999999998873
No 408
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=82.54 E-value=0.58 Score=52.37 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 001965 143 VALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~ 162 (989)
++|+|+.|+|||||+++|..
T Consensus 33 ~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHhc
Confidence 89999999999999999954
No 409
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.49 E-value=0.7 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHH
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll 161 (989)
+.+.+.|+|.|.+|+||||++..|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999996
No 410
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.45 E-value=0.66 Score=46.07 Aligned_cols=21 Identities=33% Similarity=0.262 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.|+|.|..|+||||++..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 411
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.15 E-value=0.76 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+|+|.|.+|+||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999996543
No 412
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.15 E-value=0.81 Score=48.17 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+...|+|.|.+|+||||++..|...-+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999999965433
No 413
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.11 E-value=0.41 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-|+|.|..|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999653
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.89 E-value=0.82 Score=47.47 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=23.0
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.+..+|+|+|..|+||||++..|...-+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3446899999999999999999975433
No 415
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=81.88 E-value=0.64 Score=52.07 Aligned_cols=21 Identities=43% Similarity=0.395 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 389999999999999999953
No 416
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.86 E-value=0.8 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.++++|++|+|||||+.+|...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 417
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=81.84 E-value=0.65 Score=51.92 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||+++|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 389999999999999999953
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.84 E-value=0.75 Score=44.59 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 001965 143 VALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+|+|+.|+|||||+++|.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999753
No 419
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=81.78 E-value=1.2 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.+.|.|++|+|||||+-++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 34689999999999999999764
No 420
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=81.59 E-value=0.82 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.++++|++|+|||||+.+|...
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999654
No 421
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=81.49 E-value=0.64 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-..++|+|+.|+|||||++.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 422
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=81.43 E-value=1.9 Score=48.78 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=42.5
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCc-------ccchHHHHHHHHHcCCC-----EEEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGV-------MVNTERAIRHAIQERLP-----IVVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv-------~~qt~~~l~~~~~~~ip-----~ilviNKiD~ 275 (989)
..|.+.|||||+... ..+..++..||++|+|+....-- ......+++.+...+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 457899999999775 56788999999999999864211 12233345555554443 4668999874
No 423
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.38 E-value=0.92 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.|+|.|..|+||||+++.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 424
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=81.36 E-value=0.68 Score=51.92 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||+++|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 389999999999999999954
No 425
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.19 E-value=1.1 Score=47.35 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=22.9
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.....|.++|.+|+||||++..|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 445689999999999999999997654
No 426
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=81.13 E-value=0.71 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||+++|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 389999999999999999953
No 427
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.12 E-value=0.83 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+|+|.|.+|+||||++..|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999976433
No 428
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=81.11 E-value=0.78 Score=45.32 Aligned_cols=23 Identities=35% Similarity=0.190 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..|+++|..|+||||++..|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 429
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=80.99 E-value=0.72 Score=51.92 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||+++|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 389999999999999999953
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.92 E-value=0.77 Score=48.70 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
++|+|+|..|+||||+...|....+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999965433
No 431
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.91 E-value=0.79 Score=52.44 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 129 FLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 129 ~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+.+++. ..=-.|+|+|+.|+|||||+++|+..
T Consensus 158 ~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4555543 22236899999999999999999754
No 432
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=80.83 E-value=0.73 Score=52.00 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
-++|+|+.|+|||||+++|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 389999999999999999953
No 433
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.79 E-value=2.8 Score=45.05 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=23.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+....++.+.|++|+|||+|+.++....
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4456789999999999999999886543
No 434
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=80.71 E-value=0.64 Score=48.31 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..|+|.|..|+|||||++.|...
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999998654
No 435
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=80.65 E-value=0.98 Score=48.81 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.+.+.|.++|.+|+|||||+..|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999997643
No 436
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.62 E-value=0.84 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...|+++|.+|+||||++..|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999654
No 437
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.50 E-value=0.35 Score=55.07 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..++|+|++|+|||||+..|+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999997753
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=80.45 E-value=0.91 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..|+|.|..|+||||++..|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 439
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.35 E-value=0.89 Score=45.32 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
-|+|.|..|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999964
No 440
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=80.13 E-value=1.1 Score=43.71 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.4
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...+++.|.|.+|+|||||+..+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999998654
No 441
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.06 E-value=0.96 Score=46.14 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..++|+|++|+|||||+..|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 442
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=80.00 E-value=4.3 Score=46.73 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+++++.+.|++|+|||||+..|....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999996543
No 443
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=79.87 E-value=1 Score=45.33 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+++.|.|.+|+|||||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998654
No 444
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.77 E-value=3.8 Score=55.34 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHhhcc--CCCCcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 130 LVGLMS--NPTLVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 130 l~~l~~--~~~~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
|..++. --.+-+||.|.|++|+|||+|+-++....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 555544 13456799999999999999999997653
No 445
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.64 E-value=1 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.|+|+|++|+|||||+.+|...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 46999999999999999999654
No 446
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=79.60 E-value=0.61 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 389999999999999999953
No 447
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=79.54 E-value=1.8 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-+.|.|.+|+|||||+-.+...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999888654
No 448
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=78.90 E-value=0.92 Score=51.38 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 001965 143 VALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~ 162 (989)
++|+|+.|+|||||+++|..
T Consensus 50 ~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 89999999999999999953
No 449
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=78.90 E-value=1.5 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
=+.+.|.|.+++|||||+-.|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999888754
No 450
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=78.87 E-value=2.9 Score=45.29 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=40.7
Q ss_pred CcccchHHHHHHhhhcCeEEEEeecCCCcccchHHHH----HHH---H-HcCCCEEEEEEc-ccccc
Q 001965 220 GHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI----RHA---I-QERLPIVVVVNK-VDRLI 277 (989)
Q Consensus 220 Gh~df~~ev~~alr~aD~ailVVDa~egv~~qt~~~l----~~~---~-~~~ip~ilviNK-iD~~~ 277 (989)
|+..+..........+|++|+|||+.+.--..+..-+ +.+ . ..++|++|+.|| -|...
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 6677888899999999999999999875432233322 222 1 257899999997 47753
No 451
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=78.85 E-value=2 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
=+.+.|.|++|+|||||+-.++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888743
No 452
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.71 E-value=1.1 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.2
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
...+++++|++|+|||||+..|....
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999997654
No 453
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=78.58 E-value=1.3 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..++|+|+.|+|||||+++|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999754
No 454
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=78.46 E-value=1.3 Score=45.98 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.+.+.|.|+|++||||+|.+..|...-+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456789999999999999999976544
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=78.44 E-value=1.2 Score=45.77 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
.+|+|+|.+|+||||++..|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999965443
No 456
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=78.36 E-value=0.99 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.++|+|+.|+|||||++.|...
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4999999999999999999754
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=78.26 E-value=1.1 Score=45.48 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...+|+|.|..||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999654
No 458
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=78.15 E-value=1.4 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+.+.|.|+.|+|||||+..+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999754
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.97 E-value=1.3 Score=45.95 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=23.0
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.+-..|+|+|..|+||||+...|...-+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34556799999999999999999975433
No 460
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=77.90 E-value=0.61 Score=52.12 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 389999999999999999953
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.90 E-value=1.2 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhcC
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+|.|+|++||||+|.+..|...-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999976554
No 462
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.80 E-value=9.3 Score=41.27 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=25.5
Q ss_pred CeEEEEeecCCCcc-cchHHHHH-HHHH--cCCCEEEEEEccccc
Q 001965 236 DGAVLIVDAAEGVM-VNTERAIR-HAIQ--ERLPIVVVVNKVDRL 276 (989)
Q Consensus 236 D~ailVVDa~egv~-~qt~~~l~-~~~~--~~ip~ilviNKiD~~ 276 (989)
+..|++||=.+... ......+. .+.. .++.+|+.-|..+++
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 67888888777665 43333333 3332 356788888876653
No 463
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=77.59 E-value=1.2 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
-..|+|+|..|+||||++..|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 464
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.41 E-value=1.2 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.++|.+.|++|+|||||+.+|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999654
No 465
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=77.22 E-value=1.3 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
+|+|.|.+|+||||++..|...-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996543
No 466
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=77.19 E-value=1.2 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-++|+|++|+|||||+..|...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999998643
No 467
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.08 E-value=1.2 Score=50.03 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 001965 143 VALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~ 163 (989)
.+|+|+.|+|||||++++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999754
No 468
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.08 E-value=1.3 Score=44.44 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.|+|.|..|+||||+...|...-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999996543
No 469
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=76.72 E-value=1.4 Score=46.20 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhc
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
..|+|.|++|+||||++..|....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999996543
No 470
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=76.61 E-value=1.3 Score=44.87 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|++|+|||||+..|..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 471
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.47 E-value=2 Score=48.08 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.+.|.|.+++|||||+-.|+..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 46889999999999999888754
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.43 E-value=1.7 Score=47.58 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=22.5
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
..+-|+|+|++++|||||+..|....+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 345689999999999999999976544
No 473
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.36 E-value=1.7 Score=47.39 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHhhccCCC-CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 130 LVGLMSNPT-LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 130 l~~l~~~~~-~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+..+...+. ..+++.|.|++|+|||||+.++...
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 444444444 5678999999999999999999654
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=76.33 E-value=5.4 Score=43.58 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
..++|.+.|++|+|||+|+.++....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999999997543
No 475
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=76.08 E-value=1.4 Score=49.08 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.++|+|+.|+|||||++.|....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998664
No 476
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.91 E-value=1.5 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhh
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..+++.|.|++|+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999654
No 477
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.65 E-value=1.8 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHh
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..+..++.+.|+.|+|||||+.+|..
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34556699999999999999999876
No 478
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=75.63 E-value=9.7 Score=40.60 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHhhccCC-CCcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 128 QFLVGLMSNP-TLVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 128 ~~l~~l~~~~-~~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.++....... .+-..|.+.|++|+|||+|+.+|....
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455544433 334569999999999999999997654
No 479
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=75.02 E-value=4.8 Score=44.69 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.3
Q ss_pred CcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 139 LVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 139 ~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
..++|.+.|++|+|||+|+.++....
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34689999999999999999997654
No 480
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=74.76 E-value=2.2 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-+.++|+|++|+|||||+..|...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999753
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=74.64 E-value=1.2 Score=48.11 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=17.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.+.|+|.|..|+||||+++.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999999964
No 482
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=74.62 E-value=1.6 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
..++|+|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999753
No 483
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.53 E-value=12 Score=41.20 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHHhh
Q 001965 143 VALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 143 I~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+-|.|++++|||||+-.++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998777643
No 484
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=74.27 E-value=2.1 Score=47.71 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 137 PTLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 137 ~~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+..++||+++|..|+||||+...|...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 456789999999999999999988654
No 485
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.86 E-value=1.9 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+++.+.|++|+||||++.+|...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 486
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.85 E-value=2.2 Score=46.99 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCcceEEEEcCCCCChHHHHHHHHhh
Q 001965 138 TLVRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 138 ~~irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
...+++.|.|+.|+|||||+..+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999998754
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.79 E-value=1.7 Score=44.28 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q 001965 142 NVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
-.+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999996543
No 488
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=73.79 E-value=4.2 Score=45.75 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=42.4
Q ss_pred CceEEEEeeCCCcccchHHHHHHhhhcCeEEEEeecCCCcc-------cchHHHHHHHHHcCC--C---EEEEEEcccc
Q 001965 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVM-------VNTERAIRHAIQERL--P---IVVVVNKVDR 275 (989)
Q Consensus 209 ~~~~inlIDTPGh~df~~ev~~alr~aD~ailVVDa~egv~-------~qt~~~l~~~~~~~i--p---~ilviNKiD~ 275 (989)
..|.+.|||||+... ..+..++..||++|+|+....--. .....+++.+...+. + ++.++|+.+.
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~ 319 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSN 319 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECS
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCC
Confidence 468899999999874 457788999999999998643211 112223444444433 3 3567888764
No 489
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=73.40 E-value=1.4 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999999953
No 490
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=73.37 E-value=7.6 Score=36.19 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=42.0
Q ss_pred eeEEEEEEeceecCCCEEEEccCCCCCCCCCCceEEEEeEEEEeecCcceeccccCCCCEEEEe
Q 001965 506 FDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIE 569 (989)
Q Consensus 506 ~~a~~RV~SGtL~~G~~V~vlg~~~~~~~~~~~~~~~V~~l~~~~gr~~~~v~~a~AGnIv~I~ 569 (989)
.+|-++|.+|+++.+..|++++.+- -...-++..|- |.+..|.++.+|.=|+|.
T Consensus 29 ~IAGC~V~~G~i~r~~~vRviRdg~------vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~ 82 (120)
T 2crv_A 29 PVADCRVQKGQLERHKKFKLIRNGQ------VIWKGSLTSLK----HHKDDISVIKTGMDCGLS 82 (120)
T ss_dssp EEEEEEEEESCEETTSCEEEEETTE------EEEEECCSEEE----SSSSCCSEECTTCEEEEE
T ss_pred EEeEEEEEcCEEEcCCeEEEEECCE------EEEEeEehhhc----ccccccceecCCCEEEEE
Confidence 3999999999999999999998651 11122344433 788899999999999985
No 491
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.29 E-value=1.9 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
++|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999976644
No 492
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=73.10 E-value=1.8 Score=49.79 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHHhhccCCCCcceEEEEcCCCCChHHHHHHHHhhc
Q 001965 128 QFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQT 164 (989)
Q Consensus 128 ~~l~~l~~~~~~irnI~IiGh~~~GKTTL~~~Ll~~~ 164 (989)
.-+..++.-... -.++|+|+.|+|||||++.|....
T Consensus 146 ~vld~vl~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 146 RAINALLTVGRG-QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHHSCCBTT-CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeeeEEecCC-CEEEEECCCCCCHHHHHHHHhccc
Confidence 345555332222 249999999999999999997654
No 493
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=73.02 E-value=2.1 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhcC
Q 001965 141 RNVALVGHLHHGKTVFMDMLIEQTH 165 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~~~~ 165 (989)
+.|+|+|++++|||||+..|...-+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999986644
No 494
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=73.00 E-value=1.6 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999954
No 495
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=72.98 E-value=2.3 Score=44.16 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
-..|+|.|..|+||||++..|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999999754
No 496
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.96 E-value=13 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q 001965 140 VRNVALVGHLHHGKTVFMDMLIEQ 163 (989)
Q Consensus 140 irnI~IiGh~~~GKTTL~~~Ll~~ 163 (989)
+.++.|.|++|+|||+|+.+|...
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999654
No 497
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.83 E-value=1.9 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.141 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
..++|+|+.|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 498
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=72.64 E-value=1.7 Score=51.33 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q 001965 142 NVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll~ 162 (989)
.++|+|+.|+|||||++.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999954
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=72.48 E-value=1.8 Score=46.54 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q 001965 141 RNVALVGHLHHGKTVFMDMLIE 162 (989)
Q Consensus 141 rnI~IiGh~~~GKTTL~~~Ll~ 162 (989)
+.|.|+|.+|+||||++..|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 500
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=72.22 E-value=1.5 Score=52.53 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q 001965 142 NVALVGHLHHGKTVFMDMLI 161 (989)
Q Consensus 142 nI~IiGh~~~GKTTL~~~Ll 161 (989)
.++|+|+.|+|||||++.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999994
Done!