Citrus Sinensis ID: 001965

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------99
MDDSLYDEFGNYIGPEIESDRESEADDDEDEDLPDKADEDGHASDREVAATASNGWITASNDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVKDSSTYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMVVELAQQAADLHQQMI
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccEEEEEEECcccccccHHHHHHHccccccEEEEEEEEEccccHHHHHHHHHHccccccccccccccccccccccHHHHHccccEEEcCEEEEEEcccccccEEEcccccccccccHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHccccEEEEEEcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccCEEccccccEEECcccccccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccccEEcccccccccccEEEEEHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHcccccccccEEEEcccccccccccEEEEEEEEEEEECcccEEEEEcccccccccccccEEEEEEEEEEccccEEEccccccccEEEEEcccccccccEEEEcccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHcccEEEEEEcccccEEEECccHHHHHHHHHHHHHHHccccEEEcccEEEEEccccccccccccccccccccEEEEEccccccHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHcEEECccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccCEEEEEEEEEEccccccccccccccHHHHHHHHHHHccccCCcccEEEEEEEcccHHHHHHHHHHHcccCEEEEECccccccEEEEEEEcccccccccccHHHHcccccCEEEEEEcccCEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHcHHHHcccc
MDDSLYDEFGNYIGP*************************************************MDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVKDSSTYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFK*********RSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMVVELAQQAA*LHQQ**
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MDDSLYDEFGNYIGPEIESDRESEADDDEDEDLPDKADEDGHASDREVAATASNGWITASNDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVKDSSTYVSTQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMVVELAQQAADLHQQMI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pre-mRNA-splicing factor cwf10 Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.probableO94316
116 kDa U5 small nuclear ribonucleoprotein component Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.probableQ5R6E0
116 kDa U5 small nuclear ribonucleoprotein component Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.probableQ15029

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2RDO, chain 7
Confidence level:very confident
Coverage over the Query: 136-173,195-279,291-321,343-710,752-931
View the alignment between query and template
View the model in PyMOL
Template: 1DAR, chain A
Confidence level:very confident
Coverage over the Query: 135-167,196-279,291-331,350-595,628-712,758-932
View the alignment between query and template
View the model in PyMOL
Template: 2YWE, chain A
Confidence level:very confident
Coverage over the Query: 137-166,194-279,291-305,317-332,443-459,485-687,702,760-771,796-802,818,839-954
View the alignment between query and template
View the model in PyMOL
Template: 1N0U, chain A
Confidence level:very confident
Coverage over the Query: 124-169,191-931,944-971
View the alignment between query and template
View the model in PyMOL
Template: 3MCA, chain A
Confidence level:very confident
Coverage over the Query: 215-336,353-366,443-458,484-583
View the alignment between query and template
View the model in PyMOL