Query 001966
Match_columns 989
No_of_seqs 815 out of 4728
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 13:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.6E-83 7.9E-88 771.5 76.5 681 260-966 48-731 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.8E-83 6E-88 772.5 74.2 673 154-892 50-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.7E-70 3.6E-75 642.9 69.6 545 154-719 369-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.5E-69 7.6E-74 631.8 71.5 547 224-788 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.3E-61 7.1E-66 566.4 53.3 469 156-679 88-559 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.9E-61 8.5E-66 565.8 51.8 477 259-785 83-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-54 1.8E-58 533.7 112.3 872 66-989 25-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-51 3.7E-56 512.9 108.1 842 99-988 21-863 (899)
9 PRK11447 cellulose synthase su 100.0 5.6E-30 1.2E-34 316.5 81.6 687 195-960 33-745 (1157)
10 PRK11447 cellulose synthase su 100.0 6.3E-30 1.4E-34 316.1 78.7 652 301-988 31-737 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5.9E-27 1.3E-31 274.4 75.0 679 201-974 55-756 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2.6E-26 5.6E-31 269.1 76.1 697 157-943 44-760 (987)
13 KOG2002 TPR-containing nuclear 100.0 1.5E-23 3.2E-28 227.6 67.6 597 349-957 146-799 (1018)
14 KOG2002 TPR-containing nuclear 100.0 5.7E-23 1.2E-27 223.1 65.7 576 384-973 146-761 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 5E-26 1.1E-30 233.2 37.5 453 477-945 52-508 (966)
16 KOG4626 O-linked N-acetylgluco 100.0 1.6E-25 3.5E-30 229.5 39.4 453 511-980 51-508 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-20 4.8E-25 217.2 52.7 254 697-955 308-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-19 3.1E-24 210.4 55.0 259 660-924 306-574 (615)
19 KOG0495 HAT repeat protein [RN 99.9 5E-17 1.1E-21 168.9 61.0 603 347-987 265-876 (913)
20 KOG2076 RNA polymerase III tra 99.9 3.7E-17 7.9E-22 177.4 62.3 384 277-675 153-553 (895)
21 PRK15174 Vi polysaccharide exp 99.9 9.7E-20 2.1E-24 210.4 45.6 362 553-924 15-384 (656)
22 KOG2076 RNA polymerase III tra 99.9 6.8E-17 1.5E-21 175.4 63.4 361 242-606 153-554 (895)
23 PRK10049 pgaA outer membrane p 99.9 3.3E-19 7.1E-24 210.8 48.9 413 514-972 21-470 (765)
24 KOG0495 HAT repeat protein [RN 99.9 1.2E-15 2.7E-20 158.8 65.7 622 312-972 265-895 (913)
25 PRK15174 Vi polysaccharide exp 99.9 1.6E-19 3.5E-24 208.5 41.8 364 587-961 14-384 (656)
26 PRK11788 tetratricopeptide rep 99.9 4E-20 8.8E-25 204.6 35.0 299 200-508 45-353 (389)
27 PRK11788 tetratricopeptide rep 99.9 5.9E-20 1.3E-24 203.3 35.4 309 229-544 36-354 (389)
28 PRK10049 pgaA outer membrane p 99.9 1.3E-18 2.9E-23 205.7 46.0 390 587-988 24-453 (765)
29 PRK14574 hmsH outer membrane p 99.9 1.2E-16 2.6E-21 184.3 54.5 453 483-969 44-524 (822)
30 PRK14574 hmsH outer membrane p 99.9 1E-16 2.2E-21 184.8 52.1 441 518-988 44-510 (822)
31 KOG1915 Cell cycle control pro 99.8 1.6E-13 3.5E-18 137.9 52.4 469 472-955 72-584 (677)
32 KOG4318 Bicoid mRNA stability 99.8 5.3E-15 1.1E-19 159.6 43.9 253 249-523 11-286 (1088)
33 KOG1915 Cell cycle control pro 99.8 2.7E-13 5.8E-18 136.3 52.0 452 507-973 72-551 (677)
34 KOG2003 TPR repeat-containing 99.8 2E-14 4.2E-19 143.2 39.1 475 444-942 207-709 (840)
35 KOG4318 Bicoid mRNA stability 99.8 2.6E-13 5.7E-18 146.8 50.4 266 183-488 18-286 (1088)
36 KOG1155 Anaphase-promoting com 99.8 4.4E-14 9.6E-19 141.9 40.5 359 609-986 160-531 (559)
37 KOG4422 Uncharacterized conser 99.7 1.8E-13 3.9E-18 135.8 42.9 321 159-503 120-463 (625)
38 KOG4422 Uncharacterized conser 99.7 3.7E-13 8E-18 133.6 45.0 359 401-781 205-590 (625)
39 KOG0985 Vesicle coat protein c 99.7 6.1E-11 1.3E-15 129.8 64.7 250 157-428 483-749 (1666)
40 KOG1173 Anaphase-promoting com 99.7 4.1E-14 8.9E-19 146.0 38.3 499 437-965 15-525 (611)
41 KOG2003 TPR repeat-containing 99.7 6E-14 1.3E-18 139.8 37.9 480 475-978 203-710 (840)
42 KOG1126 DNA-binding cell divis 99.7 3.8E-16 8.2E-21 164.6 23.2 282 663-956 334-620 (638)
43 KOG1155 Anaphase-promoting com 99.7 8E-13 1.7E-17 133.0 43.2 365 573-955 159-535 (559)
44 KOG4162 Predicted calmodulin-b 99.7 2.5E-12 5.5E-17 137.9 47.7 306 630-956 461-783 (799)
45 KOG4162 Predicted calmodulin-b 99.7 2.5E-12 5.4E-17 138.0 47.5 477 485-987 239-779 (799)
46 KOG0547 Translocase of outer m 99.7 1.2E-13 2.5E-18 139.7 34.9 221 694-922 337-567 (606)
47 PF13429 TPR_15: Tetratricopep 99.7 7E-17 1.5E-21 168.4 11.8 260 688-954 13-275 (280)
48 KOG0547 Translocase of outer m 99.7 7.8E-14 1.7E-18 141.0 32.0 418 509-955 116-565 (606)
49 KOG1126 DNA-binding cell divis 99.7 6.3E-15 1.4E-19 155.5 25.0 275 698-986 334-615 (638)
50 KOG2047 mRNA splicing factor [ 99.7 1.8E-09 3.8E-14 113.6 63.9 565 334-950 103-717 (835)
51 TIGR00540 hemY_coli hemY prote 99.7 1E-13 2.2E-18 152.1 33.9 290 659-955 95-398 (409)
52 TIGR00540 hemY_coli hemY prote 99.7 1.7E-13 3.6E-18 150.5 35.1 289 694-987 95-395 (409)
53 KOG2047 mRNA splicing factor [ 99.7 3.6E-09 7.9E-14 111.3 63.9 565 302-915 106-717 (835)
54 PRK10747 putative protoheme IX 99.7 2.5E-13 5.4E-18 148.1 35.8 284 661-956 97-390 (398)
55 PF13429 TPR_15: Tetratricopep 99.7 4.1E-16 8.9E-21 162.6 12.3 258 723-988 13-274 (280)
56 KOG1173 Anaphase-promoting com 99.7 7.2E-12 1.6E-16 129.7 42.1 505 402-934 15-530 (611)
57 KOG3785 Uncharacterized conser 99.6 3.8E-11 8.2E-16 116.6 42.7 472 412-924 31-517 (557)
58 PRK10747 putative protoheme IX 99.6 3.6E-13 7.9E-18 146.8 32.7 281 696-987 97-386 (398)
59 KOG0985 Vesicle coat protein c 99.6 9E-09 1.9E-13 113.3 62.6 347 198-568 368-749 (1666)
60 COG2956 Predicted N-acetylgluc 99.6 2.5E-12 5.3E-17 123.6 29.6 285 696-988 48-344 (389)
61 COG3071 HemY Uncharacterized e 99.6 1.5E-11 3.3E-16 122.5 33.5 293 660-961 96-395 (400)
62 KOG3616 Selective LIM binding 99.6 1.2E-08 2.6E-13 108.5 56.5 310 234-601 621-931 (1636)
63 KOG3785 Uncharacterized conser 99.6 1.3E-10 2.9E-15 112.8 37.4 418 517-965 66-497 (557)
64 KOG1156 N-terminal acetyltrans 99.6 6.7E-09 1.4E-13 109.9 52.8 613 275-954 19-686 (700)
65 KOG1127 TPR repeat-containing 99.5 4.3E-08 9.3E-13 108.6 59.7 184 206-396 474-658 (1238)
66 KOG1127 TPR repeat-containing 99.5 1E-08 2.3E-13 113.3 54.4 664 277-972 472-1190(1238)
67 KOG1174 Anaphase-promoting com 99.5 7.6E-10 1.7E-14 110.1 40.5 271 645-924 229-503 (564)
68 KOG3616 Selective LIM binding 99.5 2.9E-08 6.2E-13 105.7 54.0 310 374-741 621-931 (1636)
69 PRK12370 invasion protein regu 99.5 3.8E-12 8.3E-17 145.2 27.5 247 698-954 276-533 (553)
70 KOG1129 TPR repeat-containing 99.5 9.7E-13 2.1E-17 126.1 18.0 233 722-961 227-461 (478)
71 COG2956 Predicted N-acetylgluc 99.5 1.8E-11 4E-16 117.8 26.2 239 730-972 47-292 (389)
72 KOG1156 N-terminal acetyltrans 99.5 2E-09 4.3E-14 113.8 43.4 231 476-712 11-248 (700)
73 KOG1174 Anaphase-promoting com 99.5 3.4E-09 7.4E-14 105.6 39.9 293 659-962 207-504 (564)
74 KOG1129 TPR repeat-containing 99.5 3.8E-12 8.2E-17 122.1 18.3 236 684-924 224-461 (478)
75 COG3071 HemY Uncharacterized e 99.4 8.1E-10 1.7E-14 110.4 34.0 292 592-921 98-390 (400)
76 TIGR02521 type_IV_pilW type IV 99.4 2.2E-11 4.7E-16 124.4 24.4 199 752-954 31-230 (234)
77 PRK12370 invasion protein regu 99.4 5E-11 1.1E-15 136.1 28.6 215 733-954 276-500 (553)
78 TIGR02521 type_IV_pilW type IV 99.4 6E-11 1.3E-15 121.1 26.3 195 787-987 31-228 (234)
79 KOG0548 Molecular co-chaperone 99.4 7.8E-10 1.7E-14 114.6 33.3 423 516-972 10-470 (539)
80 KOG1840 Kinesin light chain [C 99.4 1.1E-10 2.4E-15 125.8 26.1 235 754-988 201-476 (508)
81 COG3063 PilF Tfp pilus assembl 99.4 1.1E-10 2.4E-15 107.6 21.5 205 754-964 37-242 (250)
82 KOG3617 WD40 and TPR repeat-co 99.4 6E-07 1.3E-11 97.3 52.5 268 262-605 725-994 (1416)
83 KOG3617 WD40 and TPR repeat-co 99.4 2.5E-07 5.3E-12 100.2 48.6 183 275-500 812-994 (1416)
84 KOG0548 Molecular co-chaperone 99.4 3.2E-09 7E-14 110.2 33.2 250 686-952 227-485 (539)
85 PRK11189 lipoprotein NlpI; Pro 99.4 3.8E-10 8.2E-15 117.6 26.3 214 732-956 40-265 (296)
86 KOG1840 Kinesin light chain [C 99.3 1E-09 2.2E-14 118.5 28.9 237 718-954 199-477 (508)
87 COG3063 PilF Tfp pilus assembl 99.3 8E-10 1.7E-14 102.0 23.9 202 719-924 36-239 (250)
88 KOG2376 Signal recognition par 99.3 6.6E-08 1.4E-12 101.5 40.0 442 481-951 20-515 (652)
89 PRK11189 lipoprotein NlpI; Pro 99.3 1.3E-09 2.8E-14 113.6 27.4 219 698-924 41-268 (296)
90 KOG2376 Signal recognition par 99.3 3E-07 6.5E-12 96.7 43.4 144 628-774 356-513 (652)
91 PF12569 NARP1: NMDA receptor- 99.3 4.9E-09 1.1E-13 114.9 31.9 289 658-955 14-333 (517)
92 PF12569 NARP1: NMDA receptor- 99.3 3.5E-09 7.6E-14 116.1 30.1 291 690-988 11-331 (517)
93 PF13041 PPR_2: PPR repeat fam 99.3 8.3E-12 1.8E-16 89.8 6.1 50 261-310 1-50 (50)
94 KOG0624 dsRNA-activated protei 99.3 1.5E-07 3.3E-12 91.8 36.3 189 694-889 166-373 (504)
95 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 4.9E-16 87.5 6.4 49 366-414 1-49 (50)
96 KOG0624 dsRNA-activated protei 99.2 5E-08 1.1E-12 95.0 30.5 316 612-955 37-369 (504)
97 KOG1125 TPR repeat-containing 99.2 2.7E-09 5.9E-14 111.7 21.0 224 692-922 294-528 (579)
98 PLN02789 farnesyltranstransfer 99.2 1.8E-08 3.9E-13 104.4 26.3 219 729-953 48-299 (320)
99 KOG1125 TPR repeat-containing 99.1 4.2E-09 9.2E-14 110.3 20.7 249 726-979 293-559 (579)
100 cd05804 StaR_like StaR_like; a 99.1 1.3E-07 2.7E-12 103.3 33.7 152 728-885 53-214 (355)
101 KOG4340 Uncharacterized conser 99.1 2.3E-07 4.9E-12 88.7 27.1 195 545-749 12-209 (459)
102 PF04733 Coatomer_E: Coatomer 99.1 8.7E-09 1.9E-13 105.4 18.3 258 694-968 12-275 (290)
103 cd05804 StaR_like StaR_like; a 99.1 7.2E-07 1.6E-11 97.3 34.8 200 754-956 116-336 (355)
104 PLN02789 farnesyltranstransfer 99.0 1.7E-07 3.7E-12 97.2 27.8 220 693-918 47-299 (320)
105 KOG4340 Uncharacterized conser 99.0 5.5E-07 1.2E-11 86.1 27.6 194 233-434 15-209 (459)
106 KOG1128 Uncharacterized conser 99.0 1.7E-08 3.6E-13 108.6 17.5 238 713-971 393-632 (777)
107 KOG1128 Uncharacterized conser 99.0 3E-08 6.6E-13 106.6 19.4 224 678-922 393-617 (777)
108 KOG2053 Mitochondrial inherita 99.0 0.00018 3.8E-09 80.4 48.0 106 274-385 20-127 (932)
109 TIGR03302 OM_YfiO outer membra 99.0 5.4E-08 1.2E-12 98.8 19.9 185 750-956 31-232 (235)
110 PRK15359 type III secretion sy 99.0 1.9E-08 4.2E-13 91.7 14.7 121 842-970 13-134 (144)
111 PRK10370 formate-dependent nit 99.0 8.4E-08 1.8E-12 92.6 19.8 147 794-956 23-173 (198)
112 TIGR03302 OM_YfiO outer membra 98.9 3.6E-08 7.8E-13 100.1 17.7 178 786-988 32-229 (235)
113 KOG2053 Mitochondrial inherita 98.9 0.00024 5.3E-09 79.3 49.9 107 167-281 21-128 (932)
114 PF04733 Coatomer_E: Coatomer 98.9 4.3E-08 9.3E-13 100.3 17.6 222 688-924 40-268 (290)
115 PRK15359 type III secretion sy 98.9 4.4E-08 9.6E-13 89.4 15.5 123 808-938 14-137 (144)
116 PRK04841 transcriptional regul 98.9 6E-06 1.3E-10 102.5 39.7 232 724-955 497-759 (903)
117 COG5010 TadD Flp pilus assembl 98.9 1.6E-07 3.5E-12 89.2 19.2 153 826-984 70-224 (257)
118 PRK15179 Vi polysaccharide bio 98.9 1.9E-07 4.1E-12 106.8 23.2 132 786-922 85-218 (694)
119 PRK04841 transcriptional regul 98.9 3.6E-06 7.9E-11 104.5 36.8 298 690-987 416-756 (903)
120 KOG1914 mRNA cleavage and poly 98.8 0.00025 5.3E-09 74.5 40.9 185 630-815 310-500 (656)
121 KOG1070 rRNA processing protei 98.8 8.5E-07 1.8E-11 102.1 25.3 238 737-979 1443-1688(1710)
122 COG5010 TadD Flp pilus assembl 98.8 1.1E-06 2.3E-11 83.8 21.0 171 741-917 56-227 (257)
123 PRK10370 formate-dependent nit 98.8 7.1E-07 1.5E-11 86.2 19.3 149 760-924 24-176 (198)
124 TIGR02552 LcrH_SycD type III s 98.7 2.2E-07 4.7E-12 84.9 14.2 116 843-964 4-120 (135)
125 PRK15179 Vi polysaccharide bio 98.7 8.2E-07 1.8E-11 101.7 21.6 135 818-956 82-217 (694)
126 PF12854 PPR_1: PPR repeat 98.7 1.3E-08 2.8E-13 65.2 3.5 32 258-289 2-33 (34)
127 PRK14720 transcript cleavage f 98.7 1.8E-06 3.8E-11 99.5 22.5 130 717-850 30-177 (906)
128 COG4783 Putative Zn-dependent 98.7 2.9E-06 6.3E-11 88.0 21.3 154 793-969 312-466 (484)
129 KOG3060 Uncharacterized conser 98.7 1E-05 2.2E-10 76.4 22.5 201 730-935 24-233 (289)
130 KOG0550 Molecular chaperone (D 98.6 2.4E-06 5.2E-11 86.1 18.7 277 655-956 56-350 (486)
131 PF12854 PPR_1: PPR repeat 98.6 3.8E-08 8.3E-13 63.0 3.9 32 363-394 2-33 (34)
132 KOG3060 Uncharacterized conser 98.6 9.7E-05 2.1E-09 70.0 26.7 196 698-898 27-231 (289)
133 KOG1070 rRNA processing protei 98.6 2.5E-05 5.5E-10 90.5 27.3 205 612-820 1457-1667(1710)
134 COG4783 Putative Zn-dependent 98.6 1.4E-05 2.9E-10 83.2 23.0 147 753-922 307-455 (484)
135 KOG0550 Molecular chaperone (D 98.6 9.5E-06 2.1E-10 81.9 20.7 178 717-921 167-350 (486)
136 PRK15363 pathogenicity island 98.6 9.8E-07 2.1E-11 78.4 12.2 102 853-956 29-132 (157)
137 KOG3081 Vesicle coat complex C 98.6 5.6E-05 1.2E-09 72.1 24.2 203 753-968 73-281 (299)
138 PRK14720 transcript cleavage f 98.5 2E-05 4.4E-10 91.0 24.6 237 647-938 30-268 (906)
139 KOG3081 Vesicle coat complex C 98.5 9.2E-05 2E-09 70.7 24.5 156 758-924 114-274 (299)
140 KOG1914 mRNA cleavage and poly 98.5 0.0029 6.3E-08 66.8 42.8 184 768-954 309-499 (656)
141 TIGR02552 LcrH_SycD type III s 98.5 5.3E-06 1.1E-10 75.7 14.7 111 809-924 5-117 (135)
142 COG3898 Uncharacterized membra 98.4 0.0011 2.3E-08 66.9 30.7 297 649-956 83-392 (531)
143 KOG0553 TPR repeat-containing 98.4 1.4E-06 3.1E-11 84.6 10.6 134 829-966 88-225 (304)
144 PF09976 TPR_21: Tetratricopep 98.4 9.1E-06 2E-10 74.7 15.3 116 834-953 23-144 (145)
145 COG4700 Uncharacterized protei 98.4 2.7E-05 5.9E-10 69.5 16.9 133 818-953 85-219 (251)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.5E-05 3.2E-10 84.4 16.3 119 792-917 174-293 (395)
147 KOG0553 TPR repeat-containing 98.3 6E-06 1.3E-10 80.4 12.1 127 792-922 86-216 (304)
148 PF12895 Apc3: Anaphase-promot 98.3 9.9E-07 2.1E-11 72.1 5.2 81 870-952 2-83 (84)
149 PF09976 TPR_21: Tetratricopep 98.3 2E-05 4.4E-10 72.4 13.8 117 869-987 23-143 (145)
150 COG3898 Uncharacterized membra 98.2 0.0082 1.8E-07 60.8 33.2 296 615-925 84-396 (531)
151 PRK02603 photosystem I assembl 98.2 2.9E-05 6.2E-10 73.9 14.5 113 860-977 38-166 (172)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.9E-05 6.4E-10 82.2 15.4 125 824-954 171-295 (395)
153 KOG1130 Predicted G-alpha GTPa 98.2 7.3E-06 1.6E-10 82.3 9.7 284 657-956 26-344 (639)
154 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.3E-05 7.1E-10 68.6 13.3 102 859-962 4-109 (119)
155 PLN03088 SGT1, suppressor of 98.2 2.3E-05 5E-10 83.8 14.3 106 827-936 7-113 (356)
156 PLN03088 SGT1, suppressor of 98.2 3.2E-05 6.9E-10 82.7 14.9 104 793-900 8-112 (356)
157 PRK15363 pathogenicity island 98.2 3.1E-05 6.7E-10 69.0 11.7 97 823-922 36-133 (157)
158 cd00189 TPR Tetratricopeptide 98.1 3.1E-05 6.6E-10 65.5 11.2 94 860-955 3-96 (100)
159 CHL00033 ycf3 photosystem I as 98.1 4.7E-05 1E-09 72.2 13.2 94 859-953 37-139 (168)
160 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.2E-05 1.3E-09 66.8 13.3 99 824-924 4-108 (119)
161 COG4235 Cytochrome c biogenesi 98.1 0.00013 2.7E-09 72.1 15.1 111 842-956 142-256 (287)
162 PRK15331 chaperone protein Sic 98.0 7.1E-05 1.5E-09 67.0 11.5 104 859-967 39-142 (165)
163 PF12895 Apc3: Anaphase-promot 98.0 8.7E-06 1.9E-10 66.5 5.3 79 835-917 2-83 (84)
164 cd00189 TPR Tetratricopeptide 98.0 6.4E-05 1.4E-09 63.5 11.2 95 825-922 3-98 (100)
165 KOG1130 Predicted G-alpha GTPa 98.0 2.9E-05 6.4E-10 78.1 9.7 279 692-986 26-339 (639)
166 PF07079 DUF1347: Protein of u 98.0 0.029 6.2E-07 58.4 49.6 43 512-554 132-178 (549)
167 PF13432 TPR_16: Tetratricopep 98.0 2.6E-05 5.6E-10 60.0 7.3 57 898-955 3-59 (65)
168 PRK02603 photosystem I assembl 98.0 0.00028 6E-09 67.1 15.4 99 825-924 38-152 (172)
169 PF13414 TPR_11: TPR repeat; P 98.0 2.8E-05 6E-10 60.8 7.0 64 891-955 2-66 (69)
170 PF13432 TPR_16: Tetratricopep 98.0 2.8E-05 6.1E-10 59.8 6.9 62 862-924 2-63 (65)
171 TIGR00756 PPR pentatricopeptid 97.9 1.5E-05 3.2E-10 52.3 4.2 33 265-297 2-34 (35)
172 COG4700 Uncharacterized protei 97.9 0.002 4.3E-08 58.1 18.2 128 853-982 85-213 (251)
173 PRK10153 DNA-binding transcrip 97.9 0.00055 1.2E-08 76.4 18.5 147 818-970 333-494 (517)
174 PRK10803 tol-pal system protei 97.9 0.00026 5.6E-09 71.3 13.7 98 864-963 150-251 (263)
175 COG4235 Cytochrome c biogenesi 97.8 0.0005 1.1E-08 67.9 14.9 105 819-926 153-261 (287)
176 TIGR00756 PPR pentatricopeptid 97.8 2.5E-05 5.3E-10 51.2 4.2 33 370-402 2-34 (35)
177 PF07079 DUF1347: Protein of u 97.8 0.057 1.2E-06 56.3 45.8 28 101-128 7-34 (549)
178 KOG2041 WD40 repeat protein [G 97.8 0.043 9.3E-07 59.9 29.8 120 470-603 689-821 (1189)
179 PF13414 TPR_11: TPR repeat; P 97.8 5.5E-05 1.2E-09 59.0 6.7 65 858-923 4-69 (69)
180 PF14559 TPR_19: Tetratricopep 97.8 4.3E-05 9.2E-10 59.5 5.9 51 904-955 3-53 (68)
181 CHL00033 ycf3 photosystem I as 97.8 0.00032 7E-09 66.5 12.8 91 822-915 35-136 (168)
182 PRK10153 DNA-binding transcrip 97.8 0.0012 2.6E-08 73.8 18.7 146 714-888 333-484 (517)
183 PF14938 SNAP: Soluble NSF att 97.8 0.0015 3.2E-08 67.9 17.9 190 794-986 42-261 (282)
184 PF14938 SNAP: Soluble NSF att 97.8 0.0049 1.1E-07 64.0 21.8 29 100-128 35-63 (282)
185 PF14559 TPR_19: Tetratricopep 97.7 7.8E-05 1.7E-09 58.0 6.2 66 868-935 2-67 (68)
186 PRK10866 outer membrane biogen 97.7 0.013 2.9E-07 58.7 23.5 57 725-781 39-98 (243)
187 PF13812 PPR_3: Pentatricopept 97.7 4.9E-05 1.1E-09 49.3 3.9 32 265-296 3-34 (34)
188 PF12688 TPR_5: Tetratrico pep 97.7 0.001 2.2E-08 57.5 12.8 94 861-954 5-102 (120)
189 PRK10866 outer membrane biogen 97.7 0.0039 8.4E-08 62.5 18.6 176 786-986 31-236 (243)
190 PF13812 PPR_3: Pentatricopept 97.6 6.8E-05 1.5E-09 48.6 3.9 34 228-261 1-34 (34)
191 KOG2041 WD40 repeat protein [G 97.6 0.043 9.3E-07 59.9 26.2 177 540-741 689-875 (1189)
192 PF01535 PPR: PPR repeat; Int 97.6 7.1E-05 1.5E-09 47.3 3.4 28 265-292 2-29 (31)
193 PF12688 TPR_5: Tetratrico pep 97.6 0.0022 4.8E-08 55.4 13.1 110 156-273 2-116 (120)
194 PRK10803 tol-pal system protei 97.6 0.0011 2.4E-08 66.8 12.8 98 825-924 146-249 (263)
195 PF01535 PPR: PPR repeat; Int 97.5 9E-05 1.9E-09 46.8 3.2 31 229-259 1-31 (31)
196 COG0457 NrfG FOG: TPR repeat [ 97.5 0.13 2.8E-06 52.2 29.9 219 733-955 38-264 (291)
197 COG1729 Uncharacterized protei 97.5 0.0014 3.1E-08 64.0 12.2 101 860-962 144-248 (262)
198 PF13371 TPR_9: Tetratricopept 97.5 0.00057 1.2E-08 54.0 7.9 52 902-954 5-56 (73)
199 PF13525 YfiO: Outer membrane 97.5 0.0082 1.8E-07 58.7 17.7 54 797-850 15-70 (203)
200 KOG2796 Uncharacterized conser 97.5 0.054 1.2E-06 52.1 21.7 136 789-925 179-319 (366)
201 PRK11906 transcriptional regul 97.4 0.0056 1.2E-07 64.8 16.5 146 802-951 273-431 (458)
202 PF13371 TPR_9: Tetratricopept 97.4 0.00065 1.4E-08 53.6 7.5 65 864-930 2-66 (73)
203 KOG0543 FKBP-type peptidyl-pro 97.4 0.0025 5.4E-08 65.5 13.0 96 858-955 258-354 (397)
204 PF05843 Suf: Suppressor of fo 97.4 0.0046 1E-07 63.8 14.9 128 721-850 4-135 (280)
205 PF10037 MRP-S27: Mitochondria 97.4 0.0026 5.6E-08 68.0 13.1 120 332-451 65-186 (429)
206 COG0457 NrfG FOG: TPR repeat [ 97.3 0.23 5E-06 50.3 32.6 222 697-924 37-268 (291)
207 PF08579 RPM2: Mitochondrial r 97.3 0.003 6.6E-08 52.1 9.9 76 339-414 31-115 (120)
208 PF13525 YfiO: Outer membrane 97.3 0.028 6.2E-07 54.9 18.8 183 724-947 11-198 (203)
209 PF10037 MRP-S27: Mitochondria 97.3 0.004 8.6E-08 66.6 13.6 119 297-415 65-185 (429)
210 PF05843 Suf: Suppressor of fo 97.3 0.0022 4.7E-08 66.2 11.4 148 823-974 2-152 (280)
211 PRK11906 transcriptional regul 97.3 0.013 2.9E-07 62.0 17.0 147 767-917 273-432 (458)
212 PF13512 TPR_18: Tetratricopep 97.3 0.0065 1.4E-07 53.4 12.3 101 859-962 12-132 (142)
213 KOG4555 TPR repeat-containing 97.2 0.0044 9.6E-08 52.2 10.4 92 865-957 51-145 (175)
214 PF08579 RPM2: Mitochondrial r 97.2 0.0031 6.7E-08 52.1 9.3 79 230-308 27-114 (120)
215 KOG1941 Acetylcholine receptor 97.2 0.038 8.2E-07 55.6 18.2 233 720-952 85-356 (518)
216 KOG0543 FKBP-type peptidyl-pro 97.1 0.0057 1.2E-07 63.0 11.9 93 893-988 258-352 (397)
217 KOG1941 Acetylcholine receptor 97.1 0.0074 1.6E-07 60.4 12.2 227 728-954 16-273 (518)
218 COG4105 ComL DNA uptake lipopr 97.0 0.35 7.5E-06 47.3 22.7 164 798-963 45-238 (254)
219 PF13281 DUF4071: Domain of un 97.0 0.17 3.7E-06 53.2 21.8 174 721-922 144-335 (374)
220 PF13424 TPR_12: Tetratricopep 97.0 0.0018 3.9E-08 51.9 6.0 63 893-955 6-74 (78)
221 KOG2796 Uncharacterized conser 97.0 0.4 8.6E-06 46.4 23.8 146 803-956 165-315 (366)
222 PF06239 ECSIT: Evolutionarily 97.0 0.011 2.3E-07 55.7 11.3 69 347-415 66-150 (228)
223 PRK15331 chaperone protein Sic 97.0 0.033 7.2E-07 50.3 14.0 92 827-921 42-134 (165)
224 KOG2610 Uncharacterized conser 97.0 0.025 5.3E-07 56.2 14.3 116 764-883 115-235 (491)
225 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.69 1.5E-05 48.5 37.1 131 543-677 397-531 (660)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.69 1.5E-05 48.4 40.2 132 682-815 396-530 (660)
227 KOG1538 Uncharacterized conser 96.9 0.072 1.6E-06 57.7 17.9 83 822-917 747-829 (1081)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0049 1.1E-07 65.1 9.1 101 853-958 70-176 (453)
229 PF13428 TPR_14: Tetratricopep 96.8 0.0025 5.5E-08 43.9 4.8 41 893-934 2-42 (44)
230 COG4785 NlpI Lipoprotein NlpI, 96.8 0.043 9.3E-07 51.1 13.7 189 759-956 72-266 (297)
231 PF13281 DUF4071: Domain of un 96.7 0.22 4.7E-06 52.4 20.0 163 792-956 146-334 (374)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.014 3E-07 61.8 11.2 66 819-886 72-141 (453)
233 PF06239 ECSIT: Evolutionarily 96.7 0.029 6.2E-07 52.9 11.8 50 366-415 45-99 (228)
234 KOG1258 mRNA processing protei 96.6 1.6 3.5E-05 48.0 36.2 187 717-906 296-489 (577)
235 KOG2062 26S proteasome regulat 96.6 1.8 4E-05 48.5 32.6 27 581-607 213-239 (929)
236 PF10300 DUF3808: Protein of u 96.6 0.097 2.1E-06 58.4 17.4 162 791-955 192-375 (468)
237 COG1729 Uncharacterized protei 96.5 0.047 1E-06 53.7 12.9 92 831-924 150-247 (262)
238 KOG1585 Protein required for f 96.5 0.22 4.8E-06 47.6 16.3 86 863-950 156-250 (308)
239 KOG1538 Uncharacterized conser 96.5 0.19 4E-06 54.7 17.8 21 865-885 825-845 (1081)
240 PF03704 BTAD: Bacterial trans 96.5 0.099 2.1E-06 48.0 14.4 70 894-964 64-138 (146)
241 COG4105 ComL DNA uptake lipopr 96.5 0.87 1.9E-05 44.6 20.6 175 728-924 44-236 (254)
242 KOG4555 TPR repeat-containing 96.4 0.047 1E-06 46.3 10.3 92 830-924 51-147 (175)
243 PF13424 TPR_12: Tetratricopep 96.4 0.01 2.3E-07 47.4 6.7 25 895-919 49-73 (78)
244 KOG1920 IkappaB kinase complex 96.4 3.3 7.2E-05 49.4 29.2 189 693-918 861-1052(1265)
245 PF10300 DUF3808: Protein of u 96.4 0.084 1.8E-06 58.8 15.6 173 809-988 179-373 (468)
246 PF13512 TPR_18: Tetratricopep 96.4 0.064 1.4E-06 47.4 11.4 87 888-976 6-98 (142)
247 PF13431 TPR_17: Tetratricopep 96.4 0.0041 9E-08 39.8 3.0 32 915-947 2-33 (34)
248 KOG4234 TPR repeat-containing 96.3 0.077 1.7E-06 48.8 11.9 90 832-924 105-200 (271)
249 KOG1585 Protein required for f 96.3 0.28 6.1E-06 46.9 15.9 30 99-128 30-59 (308)
250 KOG1550 Extracellular protein 96.3 1.9 4.1E-05 49.6 26.1 174 664-850 228-425 (552)
251 COG3118 Thioredoxin domain-con 96.2 0.29 6.4E-06 48.6 16.3 30 926-955 235-264 (304)
252 PF10345 Cohesin_load: Cohesin 96.2 3.7 8.1E-05 48.0 39.2 189 798-987 372-602 (608)
253 COG2976 Uncharacterized protei 96.2 0.19 4.1E-06 46.5 13.7 93 863-957 95-189 (207)
254 PF03704 BTAD: Bacterial trans 96.2 0.27 5.9E-06 45.1 15.5 56 862-918 67-122 (146)
255 KOG2114 Vacuolar assembly/sort 96.1 3 6.5E-05 47.7 25.2 176 303-499 339-516 (933)
256 KOG2610 Uncharacterized conser 96.1 0.21 4.5E-06 50.0 14.6 165 796-963 112-283 (491)
257 KOG4234 TPR repeat-containing 96.1 0.054 1.2E-06 49.8 9.8 95 864-961 102-200 (271)
258 COG3118 Thioredoxin domain-con 96.1 0.57 1.2E-05 46.7 17.5 123 726-850 142-264 (304)
259 PF04840 Vps16_C: Vps16, C-ter 96.0 2.5 5.4E-05 44.3 30.5 105 476-600 180-284 (319)
260 KOG1258 mRNA processing protei 95.8 3.9 8.4E-05 45.2 36.6 187 751-941 296-489 (577)
261 COG4785 NlpI Lipoprotein NlpI, 95.8 0.76 1.7E-05 43.2 15.7 186 726-922 73-267 (297)
262 COG4649 Uncharacterized protei 95.8 1.2 2.6E-05 40.3 16.3 128 833-960 69-200 (221)
263 KOG1586 Protein required for f 95.7 0.85 1.8E-05 43.5 16.0 203 701-924 3-227 (288)
264 PF13428 TPR_14: Tetratricopep 95.7 0.027 5.8E-07 38.8 5.0 40 859-899 3-42 (44)
265 KOG2114 Vacuolar assembly/sort 95.6 6 0.00013 45.4 30.1 179 157-359 336-516 (933)
266 PF04184 ST7: ST7 protein; In 95.5 0.73 1.6E-05 49.4 16.5 142 730-886 180-324 (539)
267 COG2976 Uncharacterized protei 95.5 1 2.2E-05 41.9 15.3 114 805-924 70-191 (207)
268 PF04184 ST7: ST7 protein; In 95.4 0.47 1E-05 50.8 14.9 61 893-953 260-321 (539)
269 PF10345 Cohesin_load: Cohesin 95.4 7.5 0.00016 45.6 40.5 192 83-290 41-252 (608)
270 PF02259 FAT: FAT domain; Int 95.4 3.8 8.3E-05 44.4 23.3 117 822-939 146-304 (352)
271 PF08631 SPO22: Meiosis protei 95.4 3.9 8.5E-05 42.3 26.2 62 720-781 86-150 (278)
272 PF13431 TPR_17: Tetratricopep 95.3 0.017 3.7E-07 36.9 2.7 32 880-912 2-33 (34)
273 PF06552 TOM20_plant: Plant sp 95.2 0.1 2.2E-06 47.7 8.0 31 874-905 52-82 (186)
274 COG4649 Uncharacterized protei 95.0 2.5 5.5E-05 38.4 15.7 128 730-857 70-202 (221)
275 KOG1550 Extracellular protein 94.7 11 0.00023 43.6 27.2 45 594-641 228-277 (552)
276 PF02259 FAT: FAT domain; Int 94.6 7.3 0.00016 42.1 22.8 115 788-903 147-303 (352)
277 PF08631 SPO22: Meiosis protei 94.6 6.5 0.00014 40.6 25.3 126 166-292 4-150 (278)
278 COG0790 FOG: TPR repeat, SEL1 94.6 7 0.00015 40.9 22.3 117 837-960 128-270 (292)
279 PF04840 Vps16_C: Vps16, C-ter 94.6 7.1 0.00015 40.9 32.1 104 689-811 183-286 (319)
280 PF12921 ATP13: Mitochondrial 94.5 0.47 1E-05 41.6 10.3 47 330-376 49-96 (126)
281 KOG2396 HAT (Half-A-TPR) repea 94.4 8.9 0.00019 41.4 40.7 101 853-955 455-558 (568)
282 smart00299 CLH Clathrin heavy 94.4 2 4.4E-05 38.9 14.9 85 756-848 11-95 (140)
283 KOG4648 Uncharacterized conser 94.4 0.18 3.8E-06 50.5 8.0 94 828-924 103-197 (536)
284 KOG2280 Vacuolar assembly/sort 94.3 12 0.00026 42.6 33.6 109 790-917 687-795 (829)
285 PF07719 TPR_2: Tetratricopept 94.2 0.1 2.3E-06 33.3 4.4 29 894-922 3-31 (34)
286 COG0790 FOG: TPR repeat, SEL1 94.2 4.8 0.0001 42.2 19.4 164 800-976 54-236 (292)
287 KOG4642 Chaperone-dependent E3 94.2 0.57 1.2E-05 44.8 10.5 121 830-953 18-143 (284)
288 COG2909 MalT ATP-dependent tra 94.2 15 0.00032 43.0 28.5 200 761-960 424-651 (894)
289 PF12921 ATP13: Mitochondrial 94.1 0.62 1.3E-05 40.9 10.2 48 434-481 48-96 (126)
290 PF09205 DUF1955: Domain of un 94.0 3.6 7.9E-05 35.5 13.7 58 375-433 93-150 (161)
291 PRK11619 lytic murein transgly 93.9 16 0.00035 42.7 30.1 317 587-920 42-374 (644)
292 KOG4648 Uncharacterized conser 93.9 0.23 5E-06 49.7 7.9 98 792-894 102-201 (536)
293 PF09205 DUF1955: Domain of un 93.9 3.9 8.4E-05 35.4 13.9 135 240-399 14-151 (161)
294 PF00515 TPR_1: Tetratricopept 93.7 0.15 3.2E-06 32.6 4.3 29 894-922 3-31 (34)
295 KOG1308 Hsp70-interacting prot 93.6 0.045 9.7E-07 55.0 2.4 116 834-954 126-242 (377)
296 PF04053 Coatomer_WDAD: Coatom 93.5 2.2 4.7E-05 47.0 15.5 73 798-885 329-401 (443)
297 PF07719 TPR_2: Tetratricopept 93.3 0.16 3.5E-06 32.3 4.0 33 927-961 1-33 (34)
298 PF09613 HrpB1_HrpK: Bacterial 93.2 3.1 6.8E-05 37.8 13.1 95 826-924 14-109 (160)
299 COG2909 MalT ATP-dependent tra 93.1 22 0.00048 41.6 25.7 205 155-362 415-647 (894)
300 KOG0890 Protein kinase of the 93.1 39 0.00084 44.4 29.1 151 583-741 1388-1541(2382)
301 KOG1586 Protein required for f 93.1 8.9 0.00019 37.0 21.5 17 834-850 166-182 (288)
302 PF00515 TPR_1: Tetratricopept 93.0 0.22 4.9E-06 31.7 4.3 27 824-850 3-29 (34)
303 smart00299 CLH Clathrin heavy 92.7 7.4 0.00016 35.2 15.9 43 338-381 12-54 (140)
304 PF13176 TPR_7: Tetratricopept 92.6 0.12 2.6E-06 33.6 2.6 21 932-952 4-24 (36)
305 PF13176 TPR_7: Tetratricopept 92.6 0.11 2.4E-06 33.7 2.5 29 894-922 1-29 (36)
306 KOG2471 TPR repeat-containing 92.4 1.6 3.4E-05 46.4 11.5 107 865-972 248-379 (696)
307 PF09986 DUF2225: Uncharacteri 92.4 1.7 3.7E-05 42.5 11.4 79 893-971 119-209 (214)
308 PF10602 RPN7: 26S proteasome 92.2 1.6 3.5E-05 41.3 10.7 62 824-885 38-101 (177)
309 KOG3941 Intermediate in Toll s 92.1 1.2 2.5E-05 43.8 9.5 69 349-417 88-172 (406)
310 KOG0890 Protein kinase of the 92.1 51 0.0011 43.4 33.5 118 654-779 1389-1510(2382)
311 PF04053 Coatomer_WDAD: Coatom 92.1 3.2 6.9E-05 45.7 14.2 131 335-498 297-427 (443)
312 KOG0530 Protein farnesyltransf 91.9 5.3 0.00012 39.1 13.4 172 798-976 54-236 (318)
313 PF09613 HrpB1_HrpK: Bacterial 91.8 4.4 9.6E-05 36.8 12.2 51 798-850 21-72 (160)
314 KOG2062 26S proteasome regulat 91.5 30 0.00064 39.5 42.1 292 622-922 366-677 (929)
315 KOG4642 Chaperone-dependent E3 91.4 3 6.6E-05 40.1 11.1 117 797-917 20-142 (284)
316 PRK09687 putative lyase; Provi 91.1 21 0.00045 36.9 28.3 29 891-920 205-233 (280)
317 PRK11619 lytic murein transgly 90.8 39 0.00085 39.6 37.8 333 510-885 36-374 (644)
318 PF10602 RPN7: 26S proteasome 90.7 2.8 6.1E-05 39.6 10.6 96 859-954 38-140 (177)
319 PF13174 TPR_6: Tetratricopept 90.4 0.4 8.6E-06 30.2 3.3 27 896-922 4-30 (33)
320 PF13170 DUF4003: Protein of u 90.3 25 0.00054 36.5 19.8 147 769-917 79-242 (297)
321 PF13174 TPR_6: Tetratricopept 90.2 0.36 7.9E-06 30.4 3.0 31 929-961 2-32 (33)
322 KOG3941 Intermediate in Toll s 90.2 2.4 5.3E-05 41.7 9.6 31 632-662 142-172 (406)
323 COG3629 DnrI DNA-binding trans 90.0 2.5 5.4E-05 42.7 10.0 61 859-920 155-215 (280)
324 KOG2300 Uncharacterized conser 90.0 31 0.00068 37.2 35.1 117 868-988 334-471 (629)
325 PF13181 TPR_8: Tetratricopept 89.6 0.56 1.2E-05 29.8 3.6 28 894-921 3-30 (34)
326 KOG2280 Vacuolar assembly/sort 89.6 44 0.00096 38.4 35.9 107 825-950 687-793 (829)
327 COG3629 DnrI DNA-binding trans 89.3 3.7 8E-05 41.5 10.6 75 720-794 155-234 (280)
328 PF06552 TOM20_plant: Plant sp 89.0 7.4 0.00016 36.1 11.2 42 838-887 96-137 (186)
329 TIGR02561 HrpB1_HrpK type III 88.7 5.3 0.00012 35.6 9.8 79 863-943 16-94 (153)
330 PF08424 NRDE-2: NRDE-2, neces 88.7 18 0.0004 38.2 16.1 113 874-988 48-180 (321)
331 TIGR02561 HrpB1_HrpK type III 88.6 5 0.00011 35.8 9.5 76 829-907 17-93 (153)
332 PRK09687 putative lyase; Provi 88.3 34 0.00073 35.3 27.9 17 402-418 205-221 (280)
333 KOG3364 Membrane protein invol 87.8 7.2 0.00016 34.0 9.7 71 854-924 29-103 (149)
334 PF04097 Nic96: Nup93/Nic96; 87.6 46 0.001 38.9 19.8 19 865-883 513-531 (613)
335 KOG2471 TPR repeat-containing 87.6 14 0.0003 39.8 13.5 108 796-904 249-381 (696)
336 KOG0545 Aryl-hydrocarbon recep 87.3 5.1 0.00011 38.7 9.4 65 894-961 232-296 (329)
337 PF13170 DUF4003: Protein of u 87.3 40 0.00086 35.0 20.3 129 701-831 80-226 (297)
338 PF11207 DUF2989: Protein of u 87.1 7.1 0.00015 37.0 10.2 75 872-947 121-198 (203)
339 KOG0376 Serine-threonine phosp 87.0 1.1 2.4E-05 47.8 5.5 98 828-929 10-108 (476)
340 PF13181 TPR_8: Tetratricopept 86.8 1 2.2E-05 28.6 3.4 26 825-850 4-29 (34)
341 PRK12798 chemotaxis protein; R 86.6 50 0.0011 35.4 22.3 199 764-965 124-333 (421)
342 PF08424 NRDE-2: NRDE-2, neces 86.4 38 0.00082 35.9 16.8 118 838-958 47-185 (321)
343 KOG1308 Hsp70-interacting prot 86.4 1.2 2.7E-05 45.2 5.2 120 797-921 124-244 (377)
344 KOG3364 Membrane protein invol 85.9 13 0.00029 32.5 10.2 78 889-968 29-110 (149)
345 KOG1920 IkappaB kinase complex 85.8 96 0.0021 38.0 26.5 133 659-812 919-1051(1265)
346 KOG0376 Serine-threonine phosp 85.5 1.8 3.8E-05 46.4 6.1 102 793-900 10-113 (476)
347 PF09986 DUF2225: Uncharacteri 85.4 16 0.00034 35.8 12.3 66 859-924 120-197 (214)
348 PF07035 Mic1: Colon cancer-as 84.9 33 0.00071 31.8 15.3 23 396-418 22-44 (167)
349 COG1747 Uncharacterized N-term 84.9 65 0.0014 35.3 25.7 164 681-850 64-233 (711)
350 PF13374 TPR_10: Tetratricopep 84.6 1.9 4.2E-05 28.8 4.2 28 928-955 3-30 (42)
351 PF07721 TPR_4: Tetratricopept 84.5 1.2 2.6E-05 26.2 2.6 23 929-951 3-25 (26)
352 KOG0551 Hsp90 co-chaperone CNS 84.4 7.1 0.00015 39.7 9.3 87 864-951 88-177 (390)
353 KOG4507 Uncharacterized conser 84.3 2.4 5.3E-05 46.1 6.5 103 832-938 617-721 (886)
354 KOG2066 Vacuolar assembly/sort 83.7 93 0.002 36.1 29.7 101 236-345 364-467 (846)
355 PRK15180 Vi polysaccharide bio 83.2 9.8 0.00021 40.6 10.1 136 691-829 297-432 (831)
356 KOG0276 Vesicle coat complex C 83.1 8.7 0.00019 42.4 9.9 98 310-428 649-746 (794)
357 KOG4507 Uncharacterized conser 82.6 4.8 0.0001 44.0 7.8 123 779-903 599-721 (886)
358 PF11207 DUF2989: Protein of u 82.2 15 0.00033 34.9 10.1 75 837-912 121-198 (203)
359 KOG4570 Uncharacterized conser 82.0 17 0.00037 36.8 10.7 103 328-432 59-164 (418)
360 KOG0276 Vesicle coat complex C 81.7 17 0.00037 40.3 11.4 131 335-498 616-746 (794)
361 COG3947 Response regulator con 81.7 36 0.00078 34.3 12.6 60 230-290 281-340 (361)
362 PF13374 TPR_10: Tetratricopep 81.6 3.2 7E-05 27.7 4.4 29 893-921 3-31 (42)
363 PF07035 Mic1: Colon cancer-as 81.6 45 0.00098 31.0 15.6 20 409-428 95-114 (167)
364 PF14561 TPR_20: Tetratricopep 80.8 13 0.00028 30.4 8.1 32 891-922 21-52 (90)
365 KOG1464 COP9 signalosome, subu 80.7 62 0.0014 32.0 18.0 183 619-801 71-286 (440)
366 PRK10941 hypothetical protein; 80.6 13 0.00029 37.7 10.0 62 862-924 186-247 (269)
367 KOG4570 Uncharacterized conser 80.4 20 0.00043 36.3 10.5 103 256-362 57-164 (418)
368 TIGR03504 FimV_Cterm FimV C-te 79.9 2.8 6.1E-05 28.6 3.3 25 931-955 3-27 (44)
369 PF04910 Tcf25: Transcriptiona 79.9 58 0.0013 35.0 15.1 134 76-216 23-165 (360)
370 TIGR03504 FimV_Cterm FimV C-te 79.5 3.6 7.7E-05 28.1 3.7 26 897-922 4-29 (44)
371 PF14561 TPR_20: Tetratricopep 78.9 13 0.00028 30.4 7.6 65 912-977 8-73 (90)
372 KOG0545 Aryl-hydrocarbon recep 78.9 69 0.0015 31.4 13.9 65 859-924 232-296 (329)
373 KOG2066 Vacuolar assembly/sort 78.7 1.4E+02 0.003 34.8 30.1 20 584-603 511-530 (846)
374 PF04097 Nic96: Nup93/Nic96; 78.6 1.4E+02 0.0031 35.0 24.7 48 543-591 111-158 (613)
375 KOG2063 Vacuolar assembly/sort 78.4 1.6E+02 0.0035 35.5 26.3 60 158-217 310-373 (877)
376 PF02284 COX5A: Cytochrome c o 78.4 21 0.00046 29.5 8.3 76 156-235 9-86 (108)
377 KOG0686 COP9 signalosome, subu 77.7 67 0.0015 34.1 13.7 99 156-256 151-257 (466)
378 COG1747 Uncharacterized N-term 77.7 1.2E+02 0.0025 33.4 26.3 95 612-711 65-159 (711)
379 KOG0530 Protein farnesyltransf 77.5 80 0.0017 31.4 19.3 218 733-954 58-295 (318)
380 KOG1464 COP9 signalosome, subu 77.5 79 0.0017 31.4 18.6 208 677-884 20-258 (440)
381 PF04190 DUF410: Protein of un 77.3 44 0.00095 34.0 12.7 103 799-916 2-114 (260)
382 COG4455 ImpE Protein of avirul 76.9 16 0.00035 34.9 8.4 74 723-796 6-81 (273)
383 PF14853 Fis1_TPR_C: Fis1 C-te 76.6 11 0.00024 27.0 5.7 27 898-924 7-33 (53)
384 COG3947 Response regulator con 76.2 93 0.002 31.5 17.1 60 790-850 282-341 (361)
385 PRK10941 hypothetical protein; 75.8 19 0.00041 36.6 9.4 64 895-961 184-247 (269)
386 smart00028 TPR Tetratricopepti 75.7 4.8 0.0001 24.3 3.6 25 896-920 5-29 (34)
387 PF04910 Tcf25: Transcriptiona 75.5 1.2E+02 0.0027 32.6 17.1 160 746-922 34-223 (360)
388 PF04190 DUF410: Protein of un 74.9 1E+02 0.0022 31.4 15.8 158 764-956 2-170 (260)
389 COG4455 ImpE Protein of avirul 74.5 52 0.0011 31.7 10.9 55 830-886 9-64 (273)
390 PF14853 Fis1_TPR_C: Fis1 C-te 74.3 10 0.00022 27.2 5.0 35 827-863 6-40 (53)
391 cd00923 Cyt_c_Oxidase_Va Cytoc 74.3 22 0.00048 29.0 7.3 48 700-747 24-71 (103)
392 PF07721 TPR_4: Tetratricopept 74.0 5.8 0.00012 23.3 3.2 23 157-179 3-25 (26)
393 cd00923 Cyt_c_Oxidase_Va Cytoc 73.8 35 0.00076 28.0 8.3 74 158-235 8-83 (103)
394 PF02284 COX5A: Cytochrome c o 72.7 54 0.0012 27.2 9.7 58 701-758 28-85 (108)
395 PF00244 14-3-3: 14-3-3 protei 71.1 1.2E+02 0.0025 30.4 14.0 48 874-921 143-198 (236)
396 smart00028 TPR Tetratricopepti 70.8 7 0.00015 23.5 3.5 23 827-849 6-28 (34)
397 COG4976 Predicted methyltransf 70.8 9.5 0.00021 36.6 5.4 58 866-924 4-61 (287)
398 PF10579 Rapsyn_N: Rapsyn N-te 70.7 10 0.00023 29.5 4.6 49 902-950 16-66 (80)
399 PRK12798 chemotaxis protein; R 70.6 1.6E+02 0.0035 31.8 23.5 189 731-921 125-324 (421)
400 PF12968 DUF3856: Domain of Un 70.0 52 0.0011 28.1 8.8 59 895-954 58-127 (144)
401 PF10579 Rapsyn_N: Rapsyn N-te 68.7 13 0.00029 29.0 4.8 46 834-879 18-65 (80)
402 TIGR02508 type_III_yscG type I 68.4 45 0.00098 27.5 7.8 52 341-398 47-98 (115)
403 COG5159 RPN6 26S proteasome re 68.4 1.4E+02 0.003 30.1 20.7 22 583-604 130-151 (421)
404 TIGR02508 type_III_yscG type I 68.2 55 0.0012 27.0 8.3 14 798-811 50-63 (115)
405 KOG0551 Hsp90 co-chaperone CNS 67.9 33 0.00072 35.2 8.7 95 789-885 83-181 (390)
406 KOG3824 Huntingtin interacting 67.5 24 0.00052 35.5 7.6 61 832-895 126-187 (472)
407 PF00637 Clathrin: Region in C 66.7 2.7 5.8E-05 38.3 1.1 54 234-287 13-66 (143)
408 PF12862 Apc5: Anaphase-promot 65.7 32 0.00069 28.4 7.2 24 897-920 46-69 (94)
409 PF00244 14-3-3: 14-3-3 protei 65.4 70 0.0015 32.0 10.8 178 688-885 6-197 (236)
410 PF00637 Clathrin: Region in C 65.3 2.6 5.6E-05 38.4 0.7 52 341-392 15-66 (143)
411 KOG0687 26S proteasome regulat 65.3 1.7E+02 0.0038 30.2 15.0 16 660-675 193-208 (393)
412 COG4976 Predicted methyltransf 64.8 16 0.00034 35.3 5.5 57 831-889 4-61 (287)
413 PHA02875 ankyrin repeat protei 64.5 1.8E+02 0.004 32.1 15.4 75 239-321 10-88 (413)
414 KOG0403 Neoplastic transformat 63.9 2.2E+02 0.0047 30.8 26.4 58 792-852 514-573 (645)
415 PHA02875 ankyrin repeat protei 63.6 2.2E+02 0.0048 31.5 15.8 17 375-391 72-88 (413)
416 KOG2396 HAT (Half-A-TPR) repea 62.5 2.5E+02 0.0054 31.1 39.3 77 211-292 92-169 (568)
417 COG4259 Uncharacterized protei 62.1 39 0.00084 27.6 6.4 57 912-970 57-113 (121)
418 PRK15180 Vi polysaccharide bio 61.8 2.4E+02 0.0053 30.7 34.4 88 413-502 333-420 (831)
419 KOG3824 Huntingtin interacting 60.8 32 0.00069 34.7 7.1 63 866-930 125-187 (472)
420 COG5159 RPN6 26S proteasome re 60.4 2E+02 0.0042 29.1 22.6 164 756-919 129-312 (421)
421 PF07163 Pex26: Pex26 protein; 59.9 91 0.002 31.4 9.9 86 725-810 90-181 (309)
422 COG4941 Predicted RNA polymera 59.2 1.8E+02 0.0039 30.2 11.9 86 837-924 311-397 (415)
423 smart00386 HAT HAT (Half-A-TPR 58.4 24 0.00052 21.5 4.2 26 907-933 2-27 (33)
424 PF12862 Apc5: Anaphase-promot 58.3 48 0.001 27.3 7.0 53 834-886 10-70 (94)
425 PF09477 Type_III_YscG: Bacter 56.0 1.2E+02 0.0027 25.5 8.7 80 312-398 20-99 (116)
426 PF04781 DUF627: Protein of un 55.7 1.2E+02 0.0026 25.9 8.6 43 911-954 63-105 (111)
427 COG5187 RPN7 26S proteasome re 55.5 2.4E+02 0.0052 28.6 13.5 97 787-885 115-220 (412)
428 PRK13800 putative oxidoreducta 55.2 5.1E+02 0.011 32.3 28.7 154 785-955 726-880 (897)
429 KOG2422 Uncharacterized conser 54.0 3.7E+02 0.0081 30.4 16.0 214 110-359 248-492 (665)
430 COG5187 RPN7 26S proteasome re 53.9 2.5E+02 0.0055 28.4 13.6 28 543-570 115-142 (412)
431 KOG4814 Uncharacterized conser 53.7 1.3E+02 0.0028 34.1 10.8 88 832-921 364-457 (872)
432 KOG2582 COP9 signalosome, subu 53.7 2.9E+02 0.0064 29.1 17.1 32 239-273 194-225 (422)
433 PF07163 Pex26: Pex26 protein; 53.1 1.5E+02 0.0032 30.1 10.0 87 408-496 88-181 (309)
434 KOG4521 Nuclear pore complex, 52.2 3.2E+02 0.0069 33.7 14.1 130 824-956 985-1132(1480)
435 KOG0687 26S proteasome regulat 51.2 3E+02 0.0066 28.5 14.9 27 824-850 106-132 (393)
436 PF07720 TPR_3: Tetratricopept 50.0 47 0.001 21.5 4.3 19 931-949 5-23 (36)
437 PF07575 Nucleopor_Nup85: Nup8 49.9 4.8E+02 0.01 30.4 21.5 27 154-181 148-174 (566)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 49.5 1.3E+02 0.0028 26.5 8.6 43 840-882 81-124 (126)
439 smart00777 Mad3_BUB1_I Mad3/BU 49.2 1.3E+02 0.0028 26.5 8.2 41 841-881 82-123 (125)
440 PF07720 TPR_3: Tetratricopept 48.9 35 0.00075 22.1 3.6 20 895-914 4-23 (36)
441 KOG2297 Predicted translation 48.4 3.2E+02 0.007 28.0 18.7 18 510-527 323-340 (412)
442 PF07575 Nucleopor_Nup85: Nup8 47.4 5.2E+02 0.011 30.1 18.7 25 368-393 149-173 (566)
443 COG4941 Predicted RNA polymera 47.3 3.6E+02 0.0077 28.2 12.7 124 763-889 267-397 (415)
444 KOG4077 Cytochrome c oxidase, 47.2 1.2E+02 0.0025 26.5 7.2 50 701-750 67-116 (149)
445 COG2178 Predicted RNA-binding 46.1 2E+02 0.0043 27.4 9.2 62 231-292 32-98 (204)
446 PF12968 DUF3856: Domain of Un 45.7 2E+02 0.0043 24.9 12.5 61 824-884 57-127 (144)
447 PF10255 Paf67: RNA polymerase 45.3 95 0.0021 33.7 8.3 60 825-884 125-191 (404)
448 PF11846 DUF3366: Domain of un 44.6 64 0.0014 31.1 6.6 53 75-128 120-172 (193)
449 KOG2908 26S proteasome regulat 44.4 2.7E+02 0.0058 29.1 10.6 76 757-832 80-166 (380)
450 PF14689 SPOB_a: Sensor_kinase 44.1 59 0.0013 24.3 4.7 20 828-847 29-48 (62)
451 smart00777 Mad3_BUB1_I Mad3/BU 43.3 89 0.0019 27.4 6.4 41 911-951 82-123 (125)
452 PF09670 Cas_Cas02710: CRISPR- 42.9 2.4E+02 0.0053 30.7 11.2 57 759-816 138-198 (379)
453 KOG4279 Serine/threonine prote 42.8 2.5E+02 0.0055 32.5 11.0 199 735-966 180-401 (1226)
454 PF14689 SPOB_a: Sensor_kinase 42.2 51 0.0011 24.6 4.1 22 303-324 28-49 (62)
455 PRK13800 putative oxidoreducta 41.8 7.9E+02 0.017 30.7 28.8 250 645-922 632-882 (897)
456 COG2912 Uncharacterized conser 41.5 1.1E+02 0.0024 30.8 7.5 55 900-955 189-243 (269)
457 KOG3807 Predicted membrane pro 41.1 4.3E+02 0.0093 27.4 13.6 140 827-969 189-353 (556)
458 KOG4521 Nuclear pore complex, 40.8 5.8E+02 0.013 31.7 13.9 125 789-920 985-1131(1480)
459 PF02184 HAT: HAT (Half-A-TPR) 40.4 54 0.0012 20.6 3.2 27 942-970 2-28 (32)
460 PF10255 Paf67: RNA polymerase 40.4 1.2E+02 0.0026 32.9 8.1 96 825-920 78-192 (404)
461 PF11846 DUF3366: Domain of un 40.3 1.1E+02 0.0024 29.4 7.5 35 889-923 141-175 (193)
462 KOG1497 COP9 signalosome, subu 39.9 4.5E+02 0.0097 27.3 15.7 57 827-883 108-170 (399)
463 PHA02537 M terminase endonucle 38.9 2.7E+02 0.0058 27.6 9.5 32 893-924 170-210 (230)
464 PF09670 Cas_Cas02710: CRISPR- 38.6 3.4E+02 0.0075 29.5 11.5 56 794-850 138-197 (379)
465 KOG2581 26S proteasome regulat 38.0 5.5E+02 0.012 27.7 19.3 195 49-257 54-276 (493)
466 PF13929 mRNA_stabil: mRNA sta 37.2 4.8E+02 0.01 26.8 18.0 56 366-421 200-256 (292)
467 PF15297 CKAP2_C: Cytoskeleton 37.0 3E+02 0.0065 29.0 9.9 64 838-903 119-186 (353)
468 PF11817 Foie-gras_1: Foie gra 36.4 1.1E+02 0.0024 30.9 7.0 21 863-883 184-204 (247)
469 cd02679 MIT_spastin MIT: domai 36.2 84 0.0018 24.9 4.6 60 872-955 4-67 (79)
470 cd08819 CARD_MDA5_2 Caspase ac 35.9 2.4E+02 0.0051 22.9 7.1 16 275-290 48-63 (88)
471 PF10366 Vps39_1: Vacuolar sor 35.7 2.5E+02 0.0053 24.0 7.8 26 406-431 42-67 (108)
472 PF10516 SHNi-TPR: SHNi-TPR; 35.4 65 0.0014 21.2 3.3 28 928-955 2-29 (38)
473 KOG4814 Uncharacterized conser 35.3 2.6E+02 0.0057 31.9 9.6 94 789-886 357-457 (872)
474 PF14669 Asp_Glu_race_2: Putat 35.0 4.1E+02 0.0088 25.3 13.5 26 337-362 136-161 (233)
475 COG2912 Uncharacterized conser 34.6 1.9E+02 0.0042 29.2 7.9 60 864-924 188-247 (269)
476 KOG2300 Uncharacterized conser 34.0 6.9E+02 0.015 27.7 41.6 157 798-954 334-512 (629)
477 KOG0403 Neoplastic transformat 33.1 6.8E+02 0.015 27.4 26.8 61 861-922 513-573 (645)
478 PF13762 MNE1: Mitochondrial s 32.9 3.8E+02 0.0082 24.3 9.7 94 182-275 29-127 (145)
479 KOG0991 Replication factor C, 32.7 5E+02 0.011 25.7 13.0 137 579-724 131-279 (333)
480 COG5191 Uncharacterized conser 32.1 95 0.0021 31.6 5.3 77 856-934 106-183 (435)
481 KOG2659 LisH motif-containing 31.9 5.1E+02 0.011 25.5 11.4 102 783-886 22-132 (228)
482 cd08819 CARD_MDA5_2 Caspase ac 31.8 2.8E+02 0.0061 22.5 7.4 38 520-562 48-85 (88)
483 KOG4077 Cytochrome c oxidase, 31.8 2.4E+02 0.0052 24.6 6.8 41 178-218 72-112 (149)
484 KOG1839 Uncharacterized protei 31.6 3.7E+02 0.008 33.8 11.0 155 829-986 939-1123(1236)
485 COG5191 Uncharacterized conser 31.4 1.1E+02 0.0023 31.3 5.6 80 818-900 103-184 (435)
486 COG2178 Predicted RNA-binding 31.3 4.7E+02 0.01 25.0 10.3 18 903-920 132-149 (204)
487 PRK13342 recombination factor 31.2 7.6E+02 0.016 27.3 19.2 40 406-445 230-272 (413)
488 cd00280 TRFH Telomeric Repeat 30.9 3.3E+02 0.0071 25.8 8.1 57 349-408 85-148 (200)
489 PF07840 FadR_C: FadR C-termin 30.7 69 0.0015 29.5 3.9 24 121-144 10-33 (164)
490 KOG1114 Tripeptidyl peptidase 30.5 1.1E+03 0.023 28.9 15.5 189 734-947 1091-1287(1304)
491 cd02679 MIT_spastin MIT: domai 30.2 1.1E+02 0.0024 24.3 4.4 17 834-850 20-36 (79)
492 PRK13342 recombination factor 30.0 7.9E+02 0.017 27.2 19.6 23 766-788 244-266 (413)
493 PF10155 DUF2363: Uncharacteri 29.8 3.9E+02 0.0085 23.6 10.7 52 77-137 3-54 (126)
494 PF04781 DUF627: Protein of un 29.8 2.3E+02 0.005 24.2 6.4 23 864-886 3-25 (111)
495 cd02680 MIT_calpain7_2 MIT: do 29.6 89 0.0019 24.5 3.8 17 904-920 18-34 (75)
496 PF11663 Toxin_YhaV: Toxin wit 29.6 61 0.0013 28.5 3.1 29 381-411 108-136 (140)
497 PF11817 Foie-gras_1: Foie gra 29.5 2.2E+02 0.0048 28.8 7.8 61 893-953 179-244 (247)
498 PRK10564 maltose regulon perip 29.4 92 0.002 31.9 4.9 27 338-364 262-288 (303)
499 PF05053 Menin: Menin; InterP 29.3 4.2E+02 0.0092 29.9 10.0 79 827-919 262-345 (618)
500 KOG2297 Predicted translation 28.9 6.6E+02 0.014 25.9 19.6 71 379-459 266-342 (412)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-83 Score=771.49 Aligned_cols=681 Identities=19% Similarity=0.281 Sum_probs=641.5
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 001966 260 RPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339 (989)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 339 (989)
.|+..++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++..|.+.+.++.|.+++..+.+.+..++..++|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 001966 340 IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKM 419 (989)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 419 (989)
+.+|++.|+++.|.++|++|. +||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999995 4799999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 420 VSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERM 499 (989)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (989)
..+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.++||+++.+|++.|+.++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468899999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 500 RREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDV 579 (989)
Q Consensus 500 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (989)
...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 57899
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 001966 580 IYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFC 659 (989)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 659 (989)
+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALE 739 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 739 (989)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. +++||..+|+.++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999964 5889999999999999999999999999986 489999999999999999999999999
Q ss_pred HHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 740 LFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL 818 (989)
Q Consensus 740 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 818 (989)
++..+.+.+. ++..+++.|+++|++.|++++|.++|+++ .||..+|+++|.+|++.|+.++|+++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999998 89999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEML-GKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..+++++++.|++++|.+++++|. .+|+..+|..
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 58999999999999999999999999999999983 6789999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc-hhHH
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS-ISLA 966 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 966 (989)
|+.+|...|+.+.|....+++.+..|+ ++..|..|+++|...|+|++|.++.+.|++.|+.+++ .+|+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999999988 8999999999999999999999999999999999874 3443
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-83 Score=772.53 Aligned_cols=673 Identities=20% Similarity=0.275 Sum_probs=475.5
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCcCHHHHH
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGG-FEFDVYSYT 232 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 232 (989)
++..++.++.+|++.|.+++|..+|+.|.+.|+.|+..+|..++..+.+.+.++.+..++..+.+ . ..+++.++|
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~n 125 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS----SHPSLGVRLGN 125 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH----cCCCCCchHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888877 4 567788888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 233 TVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312 (989)
Q Consensus 233 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 312 (989)
.++.+|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.++.+|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 888888888888888888888864 6888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001966 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLN 392 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (989)
++..+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .||+++||++|.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888887774 3577777777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001966 393 EIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPN 472 (989)
Q Consensus 393 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 472 (989)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777664 245
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666665555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREA 632 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 632 (989)
|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++|+.+|++|..
T Consensus 434 y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-------------------------- 483 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-------------------------- 483 (857)
T ss_pred HHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------------
Confidence 555555555555555554 23444455555555555555555555554443
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 001966 633 LGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKR 712 (989)
Q Consensus 633 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 712 (989)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+
T Consensus 484 ----------~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--- 550 (857)
T PLN03077 484 ----------TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--- 550 (857)
T ss_pred ----------CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence 2445555555555555555555555555555555555555555555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHH
Q 001966 713 GVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAML-EEQVNPNHDTY 790 (989)
Q Consensus 713 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~ 790 (989)
.+|..+|++++.+|++.|+.++|+++|++|.+.+. |+..+|..++.+|++.|++++|.++|++|. +.|+.|+..+|
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 34555555555555555555555555555555555 555555555556666666666666666666 56778888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
+.++++|++.|++++|.+++++|. ++||..+|.+|+.+|...|+.+.+....+++++ +.|++. .|..|.+.|..
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHH
Confidence 888888888888888888888874 678888888888888888888888888888887 777666 45555678888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISA 892 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~ 892 (989)
.|+|++|.++.+.|.+.|+.+++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888887776554
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-70 Score=642.88 Aligned_cols=545 Identities=20% Similarity=0.284 Sum_probs=399.7
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHH
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFV-PSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYT 232 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 232 (989)
+...|..++..|++.|++++|+++|+.|...|+. ++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~Tyn 441 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLSTFN 441 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHHHH
Confidence 3345666677777777777777777777777653 4566667777777777777777777776644 7777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 233 TVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312 (989)
Q Consensus 233 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 312 (989)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.+||+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001966 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVA--SGNQIDLVIYNTLLKGFCKSGKMEKAREV 390 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (989)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||.++|++||.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777777777777777777777777777777777777765 46777777777777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 391 LNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLK 470 (989)
Q Consensus 391 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (989)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001966 471 PNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFI 550 (989)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 550 (989)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 551 LGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELR 630 (989)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 630 (989)
.+|++.|++++|.++|++|.+.|+.||..+|++++..+. +++++|.++.+.+..- +. .......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHH
Confidence 777777777777777777777777777777777775433 2345554443333221 00 00011112234
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 631 EALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT 710 (989)
Q Consensus 631 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 710 (989)
+|..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 577777777777777777777777766666677777777777776666677777777777776332 356777777777
Q ss_pred HCCCCCCHH
Q 001966 711 KRGVPLDGS 719 (989)
Q Consensus 711 ~~~~~~~~~ 719 (989)
..|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 777766653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-69 Score=631.77 Aligned_cols=547 Identities=18% Similarity=0.243 Sum_probs=453.6
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 001966 224 FEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGC-RPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYV 302 (989)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 302 (989)
..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|.+++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 566777888888888888888888888888888875 45777788888888888888888888888864 7888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 303 NLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSG 382 (989)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 382 (989)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 383 KMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKK--KNLVPSVFTYGVIIDGLCHCGDLRQINAI 460 (989)
Q Consensus 383 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (989)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888876 57888888888888888888888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 461 LGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLK 540 (989)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (989)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 541 PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLI 620 (989)
Q Consensus 541 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 620 (989)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001966 621 NGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLT 700 (989)
Q Consensus 621 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 700 (989)
.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|. +.+++|..+.+.+..-.. .......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHH
Confidence 888888888888888888888888888888888886543 245555555444432210 01111122345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAML 779 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 779 (989)
+|..+|++|.+.|+.||..+|+.++.+++..+..+.+..+++.+...+. ++..+|+.+++++.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 6888888888888888888888888777777888888888877766655 7778888888887432 467888888888
Q ss_pred HCCCCCCHH
Q 001966 780 EEQVNPNHD 788 (989)
Q Consensus 780 ~~~~~~~~~ 788 (989)
..|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 888888764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-61 Score=566.45 Aligned_cols=469 Identities=22% Similarity=0.298 Sum_probs=272.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCcCHHHHHH
Q 001966 156 LVFNMLIDGYRKIGLLDEAVDLFLCDTGCE-FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGG-FEFDVYSYTT 233 (989)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (989)
..|+.++.+|.+.|++++|+++|..|...+ +.|+..+|+.++.++.+.++++.+.+++..|.+ . +.||+.+||.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~----~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES----SGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCcchHHHHH
Confidence 456666666776677777777666665543 456666666666666666666666666666665 3 5566666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKR 313 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 313 (989)
++.+|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 66666666666666666666643 56666666666666666666666666666666666666666666666666666
Q ss_pred hhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001966 314 LGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNE 393 (989)
Q Consensus 314 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 393 (989)
.+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|. ++|+++||+||.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666553 23556666666666666666666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001966 394 IIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNA 473 (989)
Q Consensus 394 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 473 (989)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 6655666666666666666666666666666655555555555555555555555555555555555555532 344
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001966 474 IIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGY 553 (989)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 553 (989)
.+||.+|.+|++.|+.++|.++|++|.+.|+ .||..||+.++.+|
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-----------------------------------~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGV-----------------------------------APNHVTFLAVLSAC 436 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------------------CCCHHHHHHHHHHH
Confidence 4455555555555555555555554444444 44444444444444
Q ss_pred HhcCCHHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 554 CMAGEMQTAGRFFNEMLN-SGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREA 632 (989)
Q Consensus 554 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 632 (989)
++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 455555555555555443 344555555555555555555555555554433 2445555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 633 LGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGV 679 (989)
Q Consensus 633 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 679 (989)
..+++++.+.++. +..+|..+++.|++.|++++|.++++.|.+.|+
T Consensus 514 ~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 514 RLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 5555555433211 344555555556666666666666666655554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-61 Score=565.79 Aligned_cols=477 Identities=19% Similarity=0.298 Sum_probs=343.2
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHH
Q 001966 259 CRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKG-LVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYY 337 (989)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 337 (989)
..++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567789999999999999999999999988764 67888888888888888888888888888888777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMR 417 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 417 (989)
.++++|++.|++++|.++|++|. .||+++||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 77777777777777777777774 35777777777777777777777777777777777777777777777776666
Q ss_pred ChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 001966 418 KMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVE 497 (989)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (989)
..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------- 286 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------- 286 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--------------------------------
Confidence 666666666666666666666666666666666666666665555553
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 498 RMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN 577 (989)
Q Consensus 498 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (989)
. +|.++||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||
T Consensus 287 ---~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 287 ---E----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred ---C----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 2 345555555555555555555555555555555555555555555555566666666666666666666666
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 001966 578 DVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITS 657 (989)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 657 (989)
..+|++|+++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 66666666666666666666666666642 56677777777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 658 FCKICDVDKAFQLYEEMCE-KGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQ 736 (989)
Q Consensus 658 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 736 (989)
|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|+..|+++.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHH
Confidence 7777777777777777765 477778888888888888888888887777655 356778888888888888888888
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP 785 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 785 (989)
|..+++++.+..|.+..+|..|+..|++.|++++|.+++++|.+.|+..
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 8888888777766666777788888888888888888888888777653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-54 Score=533.75 Aligned_cols=872 Identities=14% Similarity=0.087 Sum_probs=757.3
Q ss_pred HHHHHHHhhccCChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhh
Q 001966 66 VIRSVIHLNRAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCF 145 (989)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (989)
.+......+...+++.|+..|+-+....+ .++.++..++.++.+.|++++|...+++++. .+.+
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------------ 88 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDP---NDAEARFLLGKIYLALGDYAAAEKELRKALS-LGYP------------ 88 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC------------
Confidence 34333344457899999999887775433 2779999999999999999999999999987 3222
Q ss_pred hccccccccchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 001966 146 RESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFE 225 (989)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (989)
+......++.+|...|++++|+..|..........+...+..+...+...|+++.|...|+++++ ..+
T Consensus 89 --------~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~ 156 (899)
T TIGR02917 89 --------KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA----IDP 156 (899)
T ss_pred --------hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCC
Confidence 22355678899999999999999998775334444567788889999999999999999999998 666
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 226 FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305 (989)
Q Consensus 226 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 305 (989)
.+..++..++..+...|++++|.++++++.+.. +++...+..+...+...|++++|...|++..+..+ .+..++..++
T Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 234 (899)
T TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALA 234 (899)
T ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 678899999999999999999999999998864 36778899999999999999999999999988754 4677888899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKME 385 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 385 (989)
..+...|++++|...++.+.+.... +...+......+...|++++|...|+++.+.++. +...+..+...+.+.|+++
T Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHH
Confidence 9999999999999999999987643 3445555666778899999999999999987543 3445556677788999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 386 KAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMI 465 (989)
Q Consensus 386 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (989)
+|...|+++.+.. +.+...+..+...+.+.|++++|...++.+.+.+ +.+...+..+...+.+.|++++|.++|+++.
T Consensus 313 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 313 QAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998874 4566788889999999999999999999998875 4467888999999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001966 466 TRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS 545 (989)
Q Consensus 466 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (989)
+.. +.+...+..+...+...|++++|.+.++++.+.... .......++..+.+.|++++|..+++.+... .+++..+
T Consensus 391 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 467 (899)
T TIGR02917 391 ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASL 467 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHH
Confidence 864 346677888889999999999999999999876433 3445667788899999999999999999875 3457788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 546 FRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSK 625 (989)
Q Consensus 546 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 625 (989)
+..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 4566778889999999999999999999998863 4578889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 001966 626 KLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQL 705 (989)
Q Consensus 626 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 705 (989)
.|+.++|...+.++...+.. +...+..++..+...|++++|..+++.+.+.. +.+..+|..+...+...|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887543 66778889999999999999999999998763 45788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001966 706 FDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP 785 (989)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 785 (989)
|+.+.+.+ +.+...+..++..+.+.|++++|...++++.+..+.+..++..++..+...|++++|..+++.+.+.. ++
T Consensus 624 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 701 (899)
T TIGR02917 624 FKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK 701 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 99998874 66788899999999999999999999999999999889999999999999999999999999999764 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+...+..++..+...|++++|++.|+++... .|+..++..++.++.+.|++++|...++++++ ..|++. .+..++
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la 777 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALA 777 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 6778888999999999999999999999984 56668888899999999999999999999998 566554 788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
..+...|++++|.+.|+++++..+. ++.++..++..+...|+ .+|+.+++++++..|+ ++..+..++.++...|+++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999998765 88999999999999999 8899999999999888 8889999999999999999
Q ss_pred HHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHHHHhhhC
Q 001966 945 YAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKDLMKQTA 989 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 989 (989)
+|.+.++++++.+ | |..++..++..+...|++++|++++++|.
T Consensus 855 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 855 RALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999998764 5 78899999999999999999999999873
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-51 Score=512.88 Aligned_cols=842 Identities=14% Similarity=0.066 Sum_probs=735.8
Q ss_pred ChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHHHHHHHHHcCChHHHHHHH
Q 001966 99 DLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLF 178 (989)
Q Consensus 99 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 178 (989)
+...+...+..+...|++++|...|.+++.. .|.++.++..++.+|.+.|++++|...|
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 79 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK---------------------DPNDAEARFLLGKIYLALGDYAAAEKEL 79 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6788899999999999999999999999881 1225568889999999999999999999
Q ss_pred HhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 001966 179 LCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKG 258 (989)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 258 (989)
..+.+.++. +......+...+...|++++|...+.+... ...+.....+..++..+.+.|++++|...|+++.+..
T Consensus 80 ~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 155 (899)
T TIGR02917 80 RKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTL---LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID 155 (899)
T ss_pred HHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhccccc---CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999887654 455667788899999999999999987653 0245567789999999999999999999999998865
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHH
Q 001966 259 CRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYA 338 (989)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 338 (989)
+ .+..++..++..+...|++++|.++++++.+.. +++...+..+...+...|++++|...|++....++ .+..++..
T Consensus 156 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 232 (899)
T TIGR02917 156 P-RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLA 232 (899)
T ss_pred C-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 4 456788899999999999999999999998864 34778889999999999999999999999988754 47788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 001966 339 LIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRK 418 (989)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 418 (989)
++..+...|++++|...++.+.+..+. +...+......+...|++++|...|+++.+.+ +.+...+..+...+...|+
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGN 310 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCC
Confidence 999999999999999999999987543 33444445556678899999999999998875 2334456667778889999
Q ss_pred hhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 001966 419 MVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVER 498 (989)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (989)
+++|...++++.+.. +.+...+..+...+.+.|++++|...+.++.+.. +.+...+..+...+.+.|++++|.++|++
T Consensus 311 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 311 LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998874 3456778888999999999999999999998764 45678889999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001966 499 MRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPND 578 (989)
Q Consensus 499 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (989)
+.+... .+...+..+...+...|++++|...++.+.+.... .......++..+.+.|++++|.++++.+.... +++.
T Consensus 389 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 465 (899)
T TIGR02917 389 ATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNA 465 (899)
T ss_pred HHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCc
Confidence 987643 25677888888999999999999999999886533 34556677888999999999999999998754 5677
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 001966 579 VIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSF 658 (989)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 658 (989)
.++..+...+...|++++|...|+++.+.. +.+...+..++..+...|++++|.+.++.+...++. +..++..+...+
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 543 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLY 543 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 889999999999999999999999998763 446777888999999999999999999999987544 778889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQAL 738 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 738 (989)
...|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+. .+.+...|..++..+...|++++|+
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998774 346778888999999999999999999999876 4778899999999999999999999
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 739 ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL 818 (989)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 818 (989)
..|+.+.+..+.+...+..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+..
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 99999999988888899999999999999999999999999753 3367889999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
+++...+..++..+...|++++|...|+++++ ..|+..++..++.++.+.|++++|.+.++++++..+. +..++..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 56777889999999999999999999999999 6787788888999999999999999999999998765 88999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+..|...|++++|...|+++++..|+ ++.++..+++++...|+ .+|+..++++.+. .|+ +..+..++..+...|+
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC
Confidence 99999999999999999999999987 89999999999999999 8899999999764 675 6778899999999999
Q ss_pred hhhHHHHHhhh
Q 001966 978 LDESKDLMKQT 988 (989)
Q Consensus 978 ~~~a~~~~~~~ 988 (989)
+++|.+.++++
T Consensus 853 ~~~A~~~~~~a 863 (899)
T TIGR02917 853 ADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.6e-30 Score=316.54 Aligned_cols=687 Identities=12% Similarity=0.052 Sum_probs=418.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 001966 195 ALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLC 274 (989)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 274 (989)
..++.....++.+.|.+.++++.. ..+.|+.++..++..+.+.|+.++|.+.+++..+.. |+...+..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~----~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~------ 100 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLEL----IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS------ 100 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH------
Confidence 345555667777777777777776 455567777777777777777777777777777653 33222111
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHH
Q 001966 275 RVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFR 354 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (989)
....+.. ..|+......+...+.+.|++++|.+.|+.+.+.+++................|+.++|.+
T Consensus 101 ----------~~~~~~~--~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 101 ----------SRTTMLL--STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred ----------HHHHHHh--cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHH
Confidence 0111111 1233333444555666777777777777777765432222111111122223477777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 355 VKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNL 434 (989)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (989)
.++++.+..+. +...+..+...+...|+.++|+..|+++.+.. +. +...+...+..+...+.
T Consensus 169 ~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 169 QLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccCC
Confidence 77777766432 55566666777777777777777777765431 11 01112222222222222
Q ss_pred CcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 001966 435 VPSV-FTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNS 513 (989)
Q Consensus 435 ~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 513 (989)
.+.. ..+...+..+-.....+.|...+.++......|+... ......+...|++++|+..|++..+.... +...+..
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~ 308 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGA 308 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2211 1222222222233334555555555444322222211 12234455566666666666666654221 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 001966 514 LIIGLCKAKRMDEARIYLVEMLRRGLKPN-IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEG 592 (989)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 592 (989)
+...+.+.|++++|+..|++.++...... ...+..++.. ............+.+.|
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~-----------------------~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV-----------------------NRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh-----------------------hhHHHHHHHHHHHHHCC
Confidence 66666666666666666666665432211 1111111000 00000011123344455
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001966 593 NIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYE 672 (989)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 672 (989)
++++|+..|+++++.. +.+...+..+...+...|++++|++.|+++++.... +...+..+...+. .++.++|..+++
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 5555555555555431 223444444555555555555555555555544222 2333333333332 234455555544
Q ss_pred HHHHCCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 673 EMCEKGV--------EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 673 ~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
.+..... ......+..+...+...|++++|++.+++..+.. |.+...+..+...|.+.|++++|+..++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3321100 0011234556777888899999999999988864 556777888888899999999999999999
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH---------DTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
++..|.+...+..++..+...++.++|+..++++......++. ..+..++..+...|++++|+++++.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 8888877777777777778889999999988876543222221 1233456778899999999999872
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 816 RNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 816 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
.+++...+..++..+.+.|++++|+..|+++++ ..|++. .+..++.++...|++++|++.++++.+..+. +...
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~ 673 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNT 673 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHH
Confidence 356677888899999999999999999999999 788765 8888999999999999999999999887654 7788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCcc
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLG-----FASCRTVANDFLREGVMDYAAKVLECMAS-FGWVS 960 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 960 (989)
+..++.++...|++++|.++++++++..++.. ..++..++.++...|++++|.+.|++++. .|+.|
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 88999999999999999999999998765422 24667789999999999999999999853 44554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.3e-30 Score=316.07 Aligned_cols=652 Identities=13% Similarity=0.082 Sum_probs=470.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---------
Q 001966 301 YVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIY--------- 371 (989)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--------- 371 (989)
....+...-..++.+.|.+.+.++....+. |+.++..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 444556667788899999999888876533 6777888888888999999999999998887533 22221
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHH
Q 001966 372 -------NTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSR-TYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGV 443 (989)
Q Consensus 372 -------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 443 (989)
..+...+.+.|++++|++.|+.+.+.+ +|+.. ............|+.++|++.++++.+.. +-+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 223345667788888888888777653 33321 11111111223577788888888877764 235556667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcC
Q 001966 444 IIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDV-SCFNSLIIGLCKAK 522 (989)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g 522 (989)
+...+...|+.++|...++++.... +. ....+...+..+...+..++. ..+...+..+-...
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 7777777788888888887776532 11 011112222222222222221 12222222222333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 001966 523 RMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFR 602 (989)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (989)
..+.|...+.........|.... ......+...|++++|+..|++.++.. +.+..++..+...|.+.|++++|+..|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666666554433333222 233566778899999999999988764 4467888899999999999999999999
Q ss_pred HHHHCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 001966 603 CMLARGILP-EVQTY------------SVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 603 ~~~~~~~~p-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 669 (989)
+.++..... ....| ......+.+.|++++|+..|+++++..+. +...+..+...+...|++++|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 988753221 11112 12245677899999999999999987543 66777888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV--------PLDGSVYNALLSGCCKEEKLEQALELF 741 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 741 (989)
.|+++++.. +.+...+..+...|. .++.++|..+++.+..... ......+..+...+...|++++|++.|
T Consensus 407 ~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 407 YYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999863 235566777777774 4678999998876543210 011234556778888999999999999
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 742 RDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA 821 (989)
Q Consensus 742 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 821 (989)
+++++..|.+...+..++..|.+.|++++|...++++++... .+...+..+...+...|+.++|+..++.+......++
T Consensus 485 ~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 485 RQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 999999998889999999999999999999999999987532 2555555666667889999999999988754322222
Q ss_pred HH---------HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001966 822 TI---------TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA 892 (989)
Q Consensus 822 ~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 892 (989)
.. .+..++..+...|+.++|..+++. ..++...+..++..+.+.|++++|++.|+++++..|. +.
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~ 637 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NA 637 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 21 234567788999999999999872 2234447778899999999999999999999998766 89
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-c------hhH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-S------ISL 965 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~------~~~ 965 (989)
.++..++.++...|++++|++.++++.+..|+ ++.++..++.++...|++++|.+.++++++. .|+ + ..+
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ--AKSQPPSMESALVL 714 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh--CccCCcchhhHHHH
Confidence 99999999999999999999999999988877 7888999999999999999999999999764 232 1 355
Q ss_pred HHHHhhhhcCCChhhHHHHHhhh
Q 001966 966 ADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 966 ~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..++..+...|++++|++.+++.
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 67789999999999999998763
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=5.9e-27 Score=274.44 Aligned_cols=679 Identities=9% Similarity=-0.009 Sum_probs=382.2
Q ss_pred HcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 001966 201 LKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVD 280 (989)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 280 (989)
...|++++|...|+++++ ..|.+..++..+..+|.+.|++++|+..+++..+.. |+...|..++..+ ++++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~----~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQ----QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEV 125 (987)
T ss_pred HhCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccCh
Confidence 334888888888888887 666677888888888888888888888888888753 4433333333333 7888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH-HHHHHHcCCHHH
Q 001966 281 EAVELKNSMVEKGLVPDSYTYVNLIYG--------FSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL-IDGFVKQGDVEE 351 (989)
Q Consensus 281 ~A~~~~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 351 (989)
+|..+++++.+..+. +...+..+... |.+. ++|.+.++ .....+.|+..+.... ...|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 888888888876433 23333333333 4333 44444444 3333333344433333 667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 352 AFRVKDELVASGNQIDLVIYNTLLKGFCK-SGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMK 430 (989)
Q Consensus 352 A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (989)
|.+.+.++.+.++. +......|...|.+ .++ ++|..+++. .++.|...+..+...|.+.|+.++|.++++++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 77777777776533 34445556566666 355 556555442 223455666666666777777777776666654
Q ss_pred hCCCC-cCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 001966 431 KKNLV-PSVFTYGVIIDGLCHCGDLR-QINAILGEMITRGLKPN-AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPD 507 (989)
Q Consensus 431 ~~~~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 507 (989)
..-.. |...++.-+ +.+.+... .|..-|.+ . ..++ ......++..+.+.+.++
T Consensus 275 ~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~----------------- 330 (987)
T PRK09782 275 PLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYD----------------- 330 (987)
T ss_pred ccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHH-----------------
Confidence 43211 222222211 22322221 11111111 0 0000 111122234444444444
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 001966 508 VSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDG 587 (989)
Q Consensus 508 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 587 (989)
.+.++.. +.|.......-..+....+...++.+.+..|.... +-+......+.-.
T Consensus 331 ------------------~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~ 385 (987)
T PRK09782 331 ------------------AAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQ 385 (987)
T ss_pred ------------------HHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3332210 11211111111111112233444444444443321 2233333444444
Q ss_pred HHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 001966 588 YCKEGNIAEAISKFRCMLAR-G-ILPEVQTYSVLINGLSKKLEL---REALGIFLELLEKGLVPDVDTYNSLITSFCKIC 662 (989)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 662 (989)
..+.|+.++|.++|+..... + ..++.....-++..+.+.+.. .++..+...+ +...- +.-.|
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~------~~~~~ 452 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL-------PLAEQ------RQWQS 452 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc-------ccchh------HHHHh
Confidence 45555556666555555441 0 112233333455555555542 2222221111 11111 11123
Q ss_pred CHHHHHHHHHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 663 DVDKAFQLYEEMCEK-GV-EP--NTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQAL 738 (989)
Q Consensus 663 ~~~~A~~~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 738 (989)
+..++...+...... +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|+
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 333322222222221 11 23 45566666666655 6777777777666654 244433334444455778888888
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001966 739 ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL 818 (989)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 818 (989)
..|+++....+ ....+..++..+.+.|++++|...+++.++.. ++....+..+.......|++++|+..+++..+ .
T Consensus 530 ~~~rka~~~~p-~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l 605 (987)
T PRK09782 530 AAWQKISLHDM-SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--I 605 (987)
T ss_pred HHHHHHhccCC-CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--h
Confidence 88877655433 33445566777777888888888888777653 11223333333344455888888888888877 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
.|+...|..++.++.+.|++++|+..++++++ ..|+.. .+..++.++...|++++|++.++++++..|. ++.++..
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~n 682 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQ 682 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 56777788888888888888888888888888 777665 6666777888888888888888888887665 7778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENS 974 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 974 (989)
++.++...|++++|+..++++++..|+ +..+....+++..+..+++.|.+.+++... +.|+..+....+..+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~~~~~ 756 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGAMSTA 756 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccchHhhh
Confidence 888888888888888888888888776 677777888888888888888887776643 35554444444443333
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.6e-26 Score=269.09 Aligned_cols=697 Identities=10% Similarity=0.015 Sum_probs=449.6
Q ss_pred hHHHHHHH--HHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 157 VFNMLIDG--YRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 157 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
++..+..+ +...|++++|+..|+++.+..+. +..++..+...+...|++++|....+++++ ..|.|...+..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~----ldP~n~~~~~~L 118 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLK----RHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHHHHHH
Confidence 34444444 44459999999999999887655 378889999999999999999999999998 666677777666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--------HHccCChhHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGG--------LCRVGFVDEAVELKNSMVEKGLVPDSYTYVNL-I 305 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i 305 (989)
... +++.+|..+++++.+..+ .+..++..+... |.+. ++|.+.++ .......|+....... .
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHH
Confidence 433 999999999999998743 345555555555 6665 44554444 4444445555555554 8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVK-QGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKM 384 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 384 (989)
..|.+.|++++|+..+.++.+.++. +......|...|.. .++ ++|..+++.. ++-+...+..+...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCH
Confidence 8999999999999999999998744 46667778888888 477 8888886642 335888999999999999999
Q ss_pred HHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCcCH-hhHHHHHHHHHhcCCHHHHHHHH
Q 001966 385 EKAREVLNEIIRMGIE-PNSRTYTSLIQGYCRMRKMV-SAFELLDEMKKKNLVPSV-FTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 385 ~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
++|.++++++...-.. |...+|-.+ +.+.+... .|..-|.+ + ..++. .....++..+.+.++++.+.++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999998654222 444444443 44555443 12222221 1 11111 12223477888999998666552
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-C
Q 001966 462 GEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRR-G-L 539 (989)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~ 539 (989)
. +.|.......-..+....+...++...++.|.+... -+....-.+.-...+.|+.++|.++++..... + .
T Consensus 337 ~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 337 A------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred c------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 2 233332211111122234666777777776665421 14444444444455677777777777776652 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 540 KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVL 619 (989)
Q Consensus 540 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 619 (989)
.++......++..|.+.+......+...-.. +++...- +.-.|+..++
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~---------------------- 457 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGI---------------------- 457 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhhh----------------------
Confidence 1222233355555555544322222211110 0000000 0001111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 620 INGLSKKLELREALGIFLELLEKGLVP--DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAG 697 (989)
Q Consensus 620 i~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 697 (989)
..+...+...... .++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|
T Consensus 458 ----------~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 458 ----------ADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred ----------hhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 1112222222221 112 34455555555544 6666677766666554 344444334444556778
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDA 777 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 777 (989)
++++|...|+++... +|+...+..+...+.+.|+.++|...+++.++..+.....+..+...+...|++++|...+++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888776553 444455666677777788888888888888877665554444455555566888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 001966 778 MLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN 857 (989)
Q Consensus 778 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 857 (989)
.++. .|+...+..+..++.+.|++++|+..+++..... +.+...+..++..+...|++++|+..++++++ +.|+.
T Consensus 602 AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~ 676 (987)
T PRK09782 602 SLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDD 676 (987)
T ss_pred HHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 8865 4567778888888888888888888888888742 33456778888888888888888888888888 77865
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 858 F-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 858 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
. .+..++.++...|++++|+..++++++..+. +..+....+....+..+++.|.+-+++....++. ..+....+.+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~--~~a~~~~g~~ 753 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD--SSIGLRSGAM 753 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc--chhccccchH
Confidence 5 7777888888888888888888888887655 6677777888888888888888888887777654 3366667777
Q ss_pred HHhcCCh
Q 001966 937 FLREGVM 943 (989)
Q Consensus 937 ~~~~g~~ 943 (989)
+...+++
T Consensus 754 ~~~~~~~ 760 (987)
T PRK09782 754 STANNNV 760 (987)
T ss_pred hhhcccc
Confidence 7766665
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-23 Score=227.57 Aligned_cols=597 Identities=12% Similarity=0.103 Sum_probs=437.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 001966 349 VEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMG--IEPNSRTYTSLIQGYCRMRKMVSAFELL 426 (989)
Q Consensus 349 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (989)
++.|...|..+++..+ +|+...-.-.+.....|++..|+.+|..++... ..||+. -.+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5888888888887743 355554444444556788888888888866542 234432 23345555888888888888
Q ss_pred HHHHhCCCCcCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 427 DEMKKKNLVPSVFTYGVIIDGLCH---CGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREG 503 (989)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 503 (989)
.+..+.++ -++.++..|...-.. ...+..+..++...-... +.|++..+.|...|.-.|+++.+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 88888643 233333333322222 234555666666655543 4577788889999999999999999988887643
Q ss_pred CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 001966 504 ITP--DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIY 581 (989)
Q Consensus 504 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (989)
..- -...|-.+..+|-..|++++|...|.+..+....-....+..+...+.+.|+++.+...|+.+.+.. +.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH
Confidence 111 1234667888899999999999999888775332224456677888999999999999999988764 5566777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHH
Q 001966 582 TSIVDGYCKEG----NIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELL----EKGLVPDVDTYNS 653 (989)
Q Consensus 582 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~ 653 (989)
..|...|...+ ..+.|..++.+..+. .+.|...|-.+...+....-+ .++..+..+. ..+-.+.....|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777765 567777777777765 345777888777766555443 3376666544 3455567788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 654 LITSFCKICDVDKAFQLYEEMCEK---GVEPNT------LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
+...+...|++..|...|...... ...++. .+-..+...+-..++++.|.+.|..+.+. .|.-...|..+
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl 536 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHh
Confidence 999999999999999999988754 112222 23334556666778999999999999987 35455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYTTLINQYCK---- 799 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---- 799 (989)
+......++..+|..+++..+..+..++.++..++..+.+...+..|..-|+.+.+. ...+|..+..+|++.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 644555688899999999999988888888888998999888888888877777643 223577777778886643
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001966 800 --------VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG 871 (989)
Q Consensus 800 --------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 871 (989)
.+..++|+++|.+.++.. +-|..+-+.++-++...|++.+|..+|.+..+.. .-...+|.+++.+|...|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHH
Confidence 356789999999998853 5677888999999999999999999999999842 224458999999999999
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc----------
Q 001966 872 NVMEALKLKDLIFDK-RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE---------- 940 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 940 (989)
+|-.|+++|+..... ....+..+...|++++.+.|++.+|.+.+.++....|. ++...+.++.+..+.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHHHHHHHHHHHhcccc
Confidence 999999999999876 55668899999999999999999999999999999988 777766666655433
Q ss_pred ---------CChhHHHHHHHHHHhCC
Q 001966 941 ---------GVMDYAAKVLECMASFG 957 (989)
Q Consensus 941 ---------g~~~~A~~~~~~~~~~~ 957 (989)
+..+.|.++|..+...+
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34466777777776544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.7e-23 Score=223.08 Aligned_cols=576 Identities=14% Similarity=0.117 Sum_probs=433.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 384 MEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN--LVPSVFTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 384 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
++.|...|....+.. ++|+..+-.-.......+++-.|+.+|......+ ..||+. -.+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 589999999998875 5565444333344456889999999999976653 344443 23446677999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 462 GEMITRGLKPNAIIYTNLVSTYFKK---NKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRG 538 (989)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 538 (989)
...++.+. .++.++..|...-... ..+..+..++...-.... -|++..+.|..-|.-.|++..+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99998742 2333333333322222 345667777766655433 367788889999999999999999999888653
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 001966 539 LK--PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTY 616 (989)
Q Consensus 539 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 616 (989)
.. .-...|-.+..+|-..|++++|..+|.+........-...+..++..|.+.|+++.+...|+..... .+.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 21 1234577889999999999999999998887642222345667889999999999999999999987 34466777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHH
Q 001966 617 SVLINGLSKKL----ELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMC----EKGVEPNTLTYNV 688 (989)
Q Consensus 617 ~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~ 688 (989)
.++...|...+ ..+.|..++....+.-+ .|...|-.+...+. .++...++..|..+. ..+-.+.....|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777665 45667777777666542 36677776666554 455555577776655 4455678889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC---CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKR---GVPL------DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLI 759 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 759 (989)
+...+...|++++|...|...... ...+ +..+-..+.......++.+.|.+.|+.++...|.-...+..++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999988764 1122 2223445666777788999999999999999987777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH-----
Q 001966 760 EFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPATITYRSLLNGYN----- 833 (989)
Q Consensus 760 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~----- 833 (989)
......+...+|...+...+... ..++..+..+++.+.+...+..|.+-|+...+. ...+|.....+|++.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 66666788999999999998642 446677788888999998999999877777654 22467777777777653
Q ss_pred -------hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 834 -------RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 834 -------~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+..++|+.+|.+++. ..|.+. +-+-++-++...|++.+|..+|.++.+.... ...+|..++.+|..+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHH
Confidence 34467889999999998 788665 6666888899999999999999999987543 678999999999999
Q ss_pred CCHHHHHHHHHHHHHCCC-ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhh
Q 001966 906 EEYSEALRLLNEMGESGF-RLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGEN 973 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 973 (989)
|++-.|+++|+...+... +-++.+...|+.+++..|++.+|.+.+..+... .| |+...++++-...
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHH
Confidence 999999999999887643 346889999999999999999999999988654 67 4555566655543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=5e-26 Score=233.20 Aligned_cols=453 Identities=17% Similarity=0.146 Sum_probs=217.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001966 477 TNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMA 556 (989)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 556 (989)
..|..-..+.|++.+|++.-...-..+.. +....-.+-.++.+..+++.....-...++.. +.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 44445555666666666655444332211 12222222334445555555444443333332 12344555555666566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 001966 557 GEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQT-YSVLINGLSKKLELREALGI 635 (989)
Q Consensus 557 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~ 635 (989)
|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+.++. .|+... .+.+...+-..|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 66666666666555543 223345555555555555555555555555543 333322 22233333344555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 001966 636 FLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN-TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV 714 (989)
Q Consensus 636 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 714 (989)
+.+.++.... -.+.|+.|...+-..|+...|+..|++.++. .|+ ...|-.|...|...+.++.|...+.+.....
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 5555443221 2334444544455555555555555555443 222 2344445555555555555555555444431
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLI 794 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 794 (989)
|...+++..+...|..+|..|-|+..|++.++..|.-+.+|+.|+.++-..|++.+|.+.|.+.+.... ......+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence 333444444444455555555555555555555554444555555555555555555555555544311 1233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 001966 795 NQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN 872 (989)
Q Consensus 795 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 872 (989)
+.|...|.+++|..+|....+ +.|. ....+.|+..|...|++++|+..|++++. +.|... ++.+++..|-..|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 555555555555555555444 3333 22445555555555555555555555555 555443 45555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDY 945 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 945 (989)
.++|++.|.+++..+|. -.+++..|+..|...|+..+|+..|+.+++..|+ .+.++-.++.++.-..+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhcccc
Confidence 55555555555544433 3444555555555555555555555555555444 44444444444444444433
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-25 Score=229.47 Aligned_cols=453 Identities=14% Similarity=0.114 Sum_probs=340.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 001966 511 FNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK 590 (989)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (989)
...+..-..+.|++++|++.-...-..+ +.+......+-.++.+..+++.....-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455566667888888887665544332 2233333344455666666666665554444433 3445678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT-YNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~ 669 (989)
.|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+-..|++.+|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888888752 235678888888888888888888888888775 343332 2333444556788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
.|.+.++... -=.+.|+.|...+..+|++..|++.|++..+.+ |.-...|..|...|...+.++.|+..|.+++...|
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 8888877521 134567888888888888888888888888764 44467788888888888888888888888888888
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRS 827 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 827 (989)
....++..++..|..+|.++-|+..|++.++. .|+ ...|+.|.+++-..|+..+|.+.|.+.+. +.|+ ....+.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 88888888888888888888888888888875 443 46788888888888888888888888887 4455 557888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
|+..|...|++++|..+|.+.++ +.|+-. ..++|+..|-++|++++|+..|++++...|. -..+|..++..|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhh
Confidence 88888888888888888888888 888766 7788888888888888888888888876544 5678888888888888
Q ss_pred CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChhh
Q 001966 907 EYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLDE 980 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 980 (989)
+...|++.+.++++.+|. -..++..|+.+|...|+..+|++.|+.+++ ++|| ++.+-+++..+.--.+|.+
T Consensus 437 ~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 888888888888888877 678888888888888888888888888865 5888 5666666666655455544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2.2e-20 Score=217.17 Aligned_cols=254 Identities=15% Similarity=0.069 Sum_probs=142.2
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRG--VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
+++++|.+.|+...+.+ .+.....+..+...+...|++++|+..+++.++..|....++..++..+...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666655542 1223344555555555666666666666666666555555566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIE 854 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 854 (989)
++++++.. +.+...|..++..+...|++++|+..|++..+.. +.+...+..++..+.+.|++++|+..++++++ ..
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~ 463 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NF 463 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 66665542 1234555566666666666666666666666531 22344555566666666666666666666665 45
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH
Q 001966 855 PDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE------AYKAIIKALCKREEYSEALRLLNEMGESGFRLGF 927 (989)
Q Consensus 855 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 927 (989)
|+.. .+..++.++...|++++|++.|+++++..+..+.. .+......+...|++++|+.+++++++..|+ +.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cH
Confidence 5433 55555666666666666666666666553321110 0111111222346666666666666666554 45
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++..++.++...|++++|.+.++++.+
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566666666666666666666666654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.4e-19 Score=210.45 Aligned_cols=259 Identities=14% Similarity=0.083 Sum_probs=214.5
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKG-VEP-NTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQA 737 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 737 (989)
..+++++|.+.|+..++.+ ..| ....+..+...+...|++++|+..+++..+.. |.+...|..+...+...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3467899999999998764 223 45567788888889999999999999998863 44577888899999999999999
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
+..|+++++..+.+..++..++..+...|++++|+..|++.++.. +.+...+..++..+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999999988888899999999999999999999999999763 225677888899999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HH-------HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TY-------YVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
.+.+...++.++..+...|++++|+..|++.++ +.|+.. .+ ......+...|++++|+++++++++.++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 244577899999999999999999999999998 666432 11 11122333469999999999999988755
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 890 ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+..++..++.++.+.|++++|++.|+++.+....
T Consensus 541 -~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 -CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 6678999999999999999999999999887654
No 19
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=5e-17 Score=168.93 Aligned_cols=603 Identities=13% Similarity=0.108 Sum_probs=393.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 001966 347 GDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELL 426 (989)
Q Consensus 347 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (989)
+++..|..++..+.+.++. +...|-+-.+.--..|++..|..+..+--+. ++.+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 4566777777777776543 4555655555555666666666655433222 12333333322 3455566666666
Q ss_pred HHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 001966 427 DEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITP 506 (989)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 506 (989)
....+.. +-++..|.- +---..+...-.+++++.++. ++.++..|-..+ .....+.|.-++.+..+- ++.
T Consensus 339 A~Avr~~-P~Sv~lW~k---A~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLK---AADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHHhC-CCChhhhhh---HHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccc
Confidence 6666542 222322221 111122334445666776665 344444444433 445566677777777663 222
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHhHH
Q 001966 507 DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEML----NSGLVPNDVIYT 582 (989)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~ 582 (989)
+.. |.-+|.+..-|+.|..++++..+. ++.+...|.+....--..|+.+...+++++-+ ..|+..+...|.
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 222 334566677788888888887765 55577777777777777888887777776543 456666766676
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001966 583 SIVDGYCKEGNIAEAISKFRCMLARGILP--EVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660 (989)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 660 (989)
.=...+-..|..--+..+....+.-|+.. -..||..-...|.+.+.++-|..+|...++-.+. +...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHh
Confidence 66666777777777777777666666543 2346777777777777777777777777665322 55566666555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALEL 740 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 740 (989)
-|..+.-..+|++.... ++-....|...+.-+...|+...|..++..+.+.+ +.+...|.+.+........++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 67777777777777765 23344455555566666777777777777777663 55677777777777777777777777
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLK 819 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 819 (989)
|.+..... +....|..-+......+..++|++++++.++. .|+ ...|..++..+-+.++++.|.+.|..-.+. ++
T Consensus 641 lakar~~s-gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSIS-GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhccC-CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 77776643 34455555566666677777777777777764 333 356777777777777777777777766653 34
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 820 PATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 820 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
-....|..|...-.+.|+.-.|..++++..- -+|++. .|...+.+-.+.|+.+.|..+..++++.-+. +...|..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHH
Confidence 4455677777777777777777777777766 466554 6666777777777777777777777765433 55666666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+....+-++-..+...+++ .+-|+++....+..++...+++.|+++|++++.. .|| +++|..+...+..-|.
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 6666666665555555544 2237889999999999999999999999999865 786 8899999999988898
Q ss_pred hhhHHHHHhh
Q 001966 978 LDESKDLMKQ 987 (989)
Q Consensus 978 ~~~a~~~~~~ 987 (989)
-++-.+++++
T Consensus 867 eed~kev~~~ 876 (913)
T KOG0495|consen 867 EEDQKEVLKK 876 (913)
T ss_pred HHHHHHHHHH
Confidence 8877777664
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=3.7e-17 Score=177.42 Aligned_cols=384 Identities=11% Similarity=0.097 Sum_probs=181.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHH
Q 001966 277 GFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVK 356 (989)
Q Consensus 277 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (989)
|++++|.+++.+..++.+. +...|.+|...|-..|+.+++...+-.....++. |...|..+.+...++|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5555555555555544322 3444555555555555555555444444333222 3344444445555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 357 DELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSR----TYTSLIQGYCRMRKMVSAFELLDEMKKK 432 (989)
Q Consensus 357 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (989)
.+.++..+. +...+---+..|-+.|+...|.+-|.++.....+.|.. +--..+..+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 555444221 22222223333444455555555555544432111111 1111222333334344444444444331
Q ss_pred C-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH--HCCCCCCHh
Q 001966 433 N-LVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMR--REGITPDVS 509 (989)
Q Consensus 433 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~g~~~~~~ 509 (989)
+ -..+...++.++..+.+...++.|......+.....++|..-|.+-= .++ .-+.-.. ..+..++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccccccCCCCCCccch
Confidence 1 11122334444444444444444444444443332233322221000 000 0000000 011122222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 001966 510 CFNSLIIGLCKAKRMDEARIYLVEMLRRGLKP--NIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDG 587 (989)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 587 (989)
. ..+.-++......+....+.....+....| +...|.-+..++...|++.+|+++|..+.......+..+|--+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 112223344444444444455555554332 3455777777777888888888888777766555566677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHH
Q 001966 588 YCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLE--------KGLVPDVDTYNSLITSFC 659 (989)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~li~~~~ 659 (989)
|...|.+++|+..|+..+.. -+.+...-..|...+.+.|+.++|.+.+..+.. .+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 88888888888888777765 233455556666677777888888777777542 123344444444445556
Q ss_pred hcCCHHHHHHHHHHHH
Q 001966 660 KICDVDKAFQLYEEMC 675 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~ 675 (989)
..|+.++=+.+-.+|+
T Consensus 538 ~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 538 QVGKREEFINTASTLV 553 (895)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 6666665444444443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=9.7e-20 Score=210.36 Aligned_cols=362 Identities=12% Similarity=0.052 Sum_probs=222.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSG--LVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELR 630 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 630 (989)
+.++.+++.-.-+|....++. ...+..-...++..+.+.|++++|..+++..+... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 345555655555554433221 11122233445566667777777777777776652 223444445555566677777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 631 EALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT 710 (989)
Q Consensus 631 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 710 (989)
+|...++++....+. +...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 777777777765433 45556666666777777777777777776652 2245566666677777777777777777665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 711 KRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789 (989)
Q Consensus 711 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 789 (989)
... +.+...+..+ ..+...|++++|+..++.++...+ ++......++..+...|++++|+..++++++.. +.+...
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 542 3333333333 235666777777777777766654 333334445566667777777777777777543 224556
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 790 YTTLINQYCKVQNMEK----AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+..+...+...|++++ |+..|++..+.. +.+..++..++..+...|++++|...++++++ ..|+.. .+..++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 6667777777777764 677777776632 23355667777777777777777777777776 566554 555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.++.+.|++++|++.++++.+.++. +...+..++.++...|+.++|+..|+++++..|+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7777777777777777777765443 3344444566677777777777777777776655
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=6.8e-17 Score=175.35 Aligned_cols=361 Identities=14% Similarity=0.127 Sum_probs=171.7
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001966 242 RNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVL 321 (989)
Q Consensus 242 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 321 (989)
|++++|.+++.++++..+ .+...|-+|...|-..|+.+++...+--.--..+ .|...|..+.....+.|++++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 444444444444444321 2334444444444444444444433222221111 13344444444444445555555555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHC
Q 001966 322 SELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYN----TLLKGFCKSGKMEKAREVLNEIIRM 397 (989)
Q Consensus 322 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~ 397 (989)
.+.++..+ ++...+..-+..|-+.|+...|..-|.++.+..++.|..-+- ..++.+...++.+.|.+.++.....
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 55544432 123333333444555555555555555555543221221111 1233344445555555555555441
Q ss_pred C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhH--------------------------HHHHHHHHh
Q 001966 398 G-IEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTY--------------------------GVIIDGLCH 450 (989)
Q Consensus 398 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------------~~li~~~~~ 450 (989)
+ -..+...++.++..+.+...++.|......+..+...+|..-+ -.+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1 1223334555555566666666665555555442222221111 112223333
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 001966 451 CGDLRQINAILGEMITRG--LKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEAR 528 (989)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 528 (989)
....+....+.....+.. ...++..|..+..+|...|++.+|+.+|..+.....--+...|-.+..+|...|.+++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 333333333444444443 223344566666677777777777777776665433334556666666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001966 529 IYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLN--------SGLVPNDVIYTSIVDGYCKEGNIAEAISK 600 (989)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (989)
+.|+..+...+ .+...-..|...+.+.|+.++|.+.+..+.. .+..|+........+.+.+.|+.++-+..
T Consensus 470 e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77776666422 2344555555666667777777766666431 12233333444445555666666665444
Q ss_pred HHHHHH
Q 001966 601 FRCMLA 606 (989)
Q Consensus 601 ~~~~~~ 606 (989)
-..|+.
T Consensus 549 ~~~Lv~ 554 (895)
T KOG2076|consen 549 ASTLVD 554 (895)
T ss_pred HHHHHH
Confidence 444443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.3e-19 Score=210.85 Aligned_cols=413 Identities=10% Similarity=0.032 Sum_probs=247.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 001966 514 LIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGN 593 (989)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 593 (989)
.+....-.|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.+... +.+...+..++..+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 3344444555555555555554311 2233344555555555555555555555554432 2233344444445555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 594 IAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEE 673 (989)
Q Consensus 594 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 673 (989)
+++|+..++++++. .+.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...+..+.|+..++.
T Consensus 99 ~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 55555555555443 122333 444444444555555555555555444322 233333334444444444444444433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH---HHHHHHHHHHH
Q 001966 674 MCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGC-----CKEEKL---EQALELFRDML 745 (989)
Q Consensus 674 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~ 745 (989)
... .|+.. .. + .......++... ...+++ ++|++.++.++
T Consensus 176 ~~~---~p~~~--~~-l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 176 ANL---TPAEK--RD-L--------------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCC---CHHHH--HH-H--------------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 321 11100 00 0 000011111111 111223 67778888877
Q ss_pred HcCC--CCh-hhH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 746 EKGL--AST-LSF----NTLIEFLCISNKLQEAHQLLDAMLEEQVN-PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 746 ~~~~--~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
+..+ |+. ..+ ...+..+...|++++|+..|+++++.+.. |+. ....+...|...|++++|+..|+++.+.
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~- 301 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH- 301 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc-
Confidence 5422 211 111 11123445678888888888888876422 322 2222466788888899999888887763
Q ss_pred CCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-------------CH---HHHHHHHHHHHhcCCHHHH
Q 001966 818 LKPA-----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP-------------DN---FTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 818 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-------------~~---~~~~~l~~~~~~~g~~~~A 876 (989)
.|. ......+..++...|++++|...++++.+ ..| +. ..+..++..+...|++++|
T Consensus 302 -~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~--~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 302 -PETIADLSDEELADLFYSLLESENYPGALTVTAHTIN--NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred -CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh--cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 222 24566677778888999999998888887 333 32 2445667888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++.+++++...|. +..++..++..+...|++++|++.++++++..|+ +...+..++.++...|++++|+++++.+++.
T Consensus 379 ~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999988766 7899999999999999999999999999999988 8889999999999999999999999999875
Q ss_pred CCcccchhHHHHHhhh
Q 001966 957 GWVSNSISLADIVKGE 972 (989)
Q Consensus 957 ~~~p~~~~~~~l~~~~ 972 (989)
.||......+.+.+
T Consensus 457 --~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 --EPQDPGVQRLARAR 470 (765)
T ss_pred --CCCCHHHHHHHHHH
Confidence 78877776666665
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.2e-15 Score=158.76 Aligned_cols=622 Identities=12% Similarity=0.037 Sum_probs=421.1
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001966 312 KRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL 391 (989)
Q Consensus 312 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (989)
++..+|..+++...+.++. ++..|.+-...--..|++..|..+...--+. ++.+...|---+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 3445555566665555432 3333333333334455555555554443332 222334443322 333445555555
Q ss_pred HHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 392 NEIIRMGIEPNS-RTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLK 470 (989)
Q Consensus 392 ~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (989)
-...+. -|++ ..|--.+. -..+...-..++++..+. ++-++..|. +.....+.+.|.-++.+..+. ++
T Consensus 339 A~Avr~--~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHh--CCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh-cc
Confidence 555543 2332 22222111 122233334555555554 233333333 334455666677777777764 22
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHH
Q 001966 471 PNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEML----RRGLKPNIHSF 546 (989)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 546 (989)
.+. -|.-+|.+...++.|..++.+..+. ++.+...|.+....--.+|+.+....++.+-+ ..|+..+...|
T Consensus 408 ~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 233 3344556667788888888887764 55567777766666667788887777766543 45777777778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 547 RAFILGYCMAGEMQTAGRFFNEMLNSGLVPND--VIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLS 624 (989)
Q Consensus 547 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 624 (989)
..=...+-..|..-.+..+....+..|+.... .+|..-.+.|.+.+.++-|..+|...++- .+-+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 77777788888888888888888777655433 46777778888888888888888887775 3446677777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001966 625 KKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQ 704 (989)
Q Consensus 625 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 704 (989)
..|..++-..+|+++...-++ ....|......+...|++..|..++.+..+... .+...|-.-+........++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHH
Confidence 788888888888888876332 455666666677778888888888888887743 366777777787888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 001966 705 LFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN 784 (989)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 784 (989)
+|.+.... .|+..+|..-+....-.++.++|+.++++.++..|.-...|..+++.+.+.++++.|.+.|..-.+. ++
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 88887764 5677777777777777888888888888888888777778888888888888888888888777654 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH
Q 001966 785 PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVM 863 (989)
Q Consensus 785 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 863 (989)
.....|..+...--+.|.+-+|..++++..-++ +.+...|...++.-.+.|+.+.|..+..++++ -.|++. .|..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHH
Confidence 345677777777778888888888888887754 55677888888888888888888888888887 556555 56666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM 943 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 943 (989)
+...-+.++-......+++. +.|+.+...++..+....+++.|.+.|+++++.+|+ ...+|..+-..+...|.-
T Consensus 794 I~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCH
Confidence 66666666655555555443 346677778888888888888888888888888877 777787788888888888
Q ss_pred hHHHHHHHHHHhCCCccc-chhHHHHHhhh
Q 001966 944 DYAAKVLECMASFGWVSN-SISLADIVKGE 972 (989)
Q Consensus 944 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 972 (989)
++-.+++++.... +|. +..|..+...-
T Consensus 868 ed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 868 EDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 8888888877554 665 56665554443
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.6e-19 Score=208.50 Aligned_cols=364 Identities=15% Similarity=0.072 Sum_probs=297.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 001966 587 GYCKEGNIAEAISKFRCMLARG--ILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 664 (989)
.+.+..+++.-.-+|....+.- -..+......++..+.+.|++++|..++...+...+.+ ...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCH
Confidence 4456777777666665544331 01122334456677889999999999999999886664 44455555667789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 665 DKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. |.+...+..++..+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999874 2356778888899999999999999999999863 667888899999999999999999999999
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATIT 824 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 824 (989)
....|.+...+..+. .+...|++++|...++++++....++...+..++..+...|++++|+..+++..+.. +.+...
T Consensus 171 ~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 171 AQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 888886665555543 478899999999999998876433445555666788899999999999999999853 445678
Q ss_pred HHHHHHHHHhcCCHhH----HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSE----VFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
+..++..+...|++++ |...++++++ +.|+.. .+..++..+...|++++|+..++++++..+. +..++..++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 8899999999999986 8999999999 888766 7888999999999999999999999998766 788899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.++.+.|++++|+..++++++..|. ++..+..++.++...|++++|.+.|+++.+. .|+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chh
Confidence 9999999999999999999998877 6666677889999999999999999998765 454
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4e-20 Score=204.61 Aligned_cols=299 Identities=15% Similarity=0.105 Sum_probs=160.1
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHcc
Q 001966 200 LLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPN---VATYNVVIGGLCRV 276 (989)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 276 (989)
+...|+++.|+..|.++++ ..+.+..++..++..+.+.|++++|..+++.+.+.+..++ ..++..++..|.+.
T Consensus 45 ~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLK----VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHhcCChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3455566666666666665 3444555666666666666666666666666655421111 13455556666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHHcCCHHHH
Q 001966 277 GFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDT----VAYYALIDGFVKQGDVEEA 352 (989)
Q Consensus 277 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A 352 (989)
|++++|..+|+++.+.. .++..++..++..+++.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66666666666665542 224455555666666666666666666665554432221 1234455555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 353 FRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKK 432 (989)
Q Consensus 353 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (989)
...|+++.+..+ .+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|++.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666655432 2344555555666666666666666666654421111234555555555666666666665555554
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCH
Q 001966 433 NLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK---KNKLQEAGKLVERMRREGITPDV 508 (989)
Q Consensus 433 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~~~~ 508 (989)
. |+...+..++..+.+.|++++|..+++++++. .|+...++.++..++. .|+.+++..++++|.++++.|++
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2 33334455555555555555555555555544 3455555555544443 33555555555555554444443
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.9e-20 Score=203.31 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 001966 229 YSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPD---SYTYVNLI 305 (989)
Q Consensus 229 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li 305 (989)
......+..+...|++++|...|+++.+.++ .+..++..+...+.+.|++++|..+++.+...+..++ ...+..++
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3444455567788999999999999998643 4566888888999999999999999999887543222 24577778
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhc
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDL----VIYNTLLKGFCKS 381 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~ 381 (989)
..|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 88888888888888888887653 345677888888888888888888888888876543321 2345566677778
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 382 GKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 382 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
|++++|...|+++.+.. +.+..++..+...+.+.|++++|.++++++.+.+......+++.++.+|++.|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877654 33455677777778888888888888888776543322455667777777777777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 001966 462 GEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCK---AKRMDEARIYLVEMLRRG 538 (989)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~ 538 (989)
+++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.+++..++++|++.+
T Consensus 273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 7776653 44445566677777777777777777776654 4666666666666554 346777777777777665
Q ss_pred CCCCHH
Q 001966 539 LKPNIH 544 (989)
Q Consensus 539 ~~~~~~ 544 (989)
+.|++.
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 555443
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.3e-18 Score=205.74 Aligned_cols=390 Identities=11% Similarity=0.056 Sum_probs=242.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDK 666 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 666 (989)
.....|+.++|++++.+.... -+.+...+..+...+...|++++|..++++.++..+. +...+..++..+...|++++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 333444444444444444331 1223333444444444444444444444444443211 23333344444445555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 667 AFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLE 746 (989)
Q Consensus 667 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 746 (989)
|+..++++++.. +.+.. +..+..++...|+.++|+..++++.+.. |.+...+..+..++...+..++|++.++.+..
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 555555554431 11223 4444444555555555555555555442 33444444444444455555555555544332
Q ss_pred cCCCC-----hhhHHHHHHHH-----HHcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHH
Q 001966 747 KGLAS-----TLSFNTLIEFL-----CISNKL---QEAHQLLDAMLEE-QVNPNHD-TY----TTLINQYCKVQNMEKAK 807 (989)
Q Consensus 747 ~~~~~-----~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~ 807 (989)
.|.. ......++... ...+++ ++|++.++.+++. ...|+.. .+ ...+..+...|++++|+
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1100 00111111111 222334 7888899988853 2233221 11 11123446779999999
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 808 QLFLEMQQRNLK-PATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----FTYYVMIDAHCKEGNVMEALKLKD 881 (989)
Q Consensus 808 ~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~ 881 (989)
..|+++.+.+.+ |+. ....++..|...|++++|+..|+++++ ..|.. .....+..++.+.|++++|.+.++
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~--~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY--HPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh--cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999886422 332 223357789999999999999999987 44433 345666778899999999999999
Q ss_pred HHHhCCCC-----------CC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHH
Q 001966 882 LIFDKRMP-----------IS---AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 882 ~~~~~~~~-----------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
++.+..++ |+ ..++..++..+...|++++|++.+++++...|. ++..+..++.++...|++++|+
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 99876431 23 346678889999999999999999999999988 8999999999999999999999
Q ss_pred HHHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 948 KVLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 948 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+.++++++. .|| ...++..+..+...|++++|+++++++
T Consensus 414 ~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 414 NELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999764 786 678888899999999999999999875
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.2e-16 Score=184.31 Aligned_cols=453 Identities=11% Similarity=0.042 Sum_probs=265.7
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 483 YFKKNKLQEAGKLVERMRREGITPDV--SCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQ 560 (989)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 560 (989)
..+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.+.. ..........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 447777777777777777643 332 233 6666666777777777777777621 1112333333355666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 561 TAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELL 640 (989)
Q Consensus 561 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 640 (989)
+|+++++++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 7777777777664 334555666667777777777777777777664 4454444444444434555555777777777
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001966 641 EKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSV 720 (989)
Q Consensus 641 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 720 (989)
+..+. +...+..+.....+.|-...|.++..+-.+. +.+. .+..|- .+.|.+..+.... ++...
T Consensus 197 ~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l~--------~~~~a~~vr~a~~---~~~~~- 260 (822)
T PRK14574 197 RLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQLE--------RDAAAEQVRMAVL---PTRSE- 260 (822)
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHHH--------HHHHHHHHhhccc---ccccc-
Confidence 66433 5555566666666667666666554432211 1111 111100 0111111111000 00000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 721 YNALLSGCCKEEKLEQALELFRDMLEK---GLASTL----SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793 (989)
Q Consensus 721 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 793 (989)
-. +---.+.|+.-++.++.. .|+... +..-.+-++...|++.++++.|+.+...+.+-...+-..+
T Consensus 261 ----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 ----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00 000134455555555542 221111 1112334556667777777777777765543333455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-C------------CCC
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRN-----LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK-G------------IEP 855 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g------------~~p 855 (989)
+++|...+++++|+.+|+++.... .+++......|..+|...+++++|..+++++.+. . -+|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 777777777777777777765432 1222333456677777777777777777777661 0 122
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 856 DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 856 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
|.. ....++..+...|++.+|++.++++....|. |..++..+++++...|...+|+..++.+....|+ +..+...++
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHH
Confidence 333 2333456677788888888888888777655 8888888888888888888888888777777776 777788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHH
Q 001966 935 NDFLREGVMDYAAKVLECMASFGWVSNSISLADIV 969 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 969 (989)
.++...|+|.+|.++.+.+.+. .|+......+.
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 8888888888888888777654 67655444433
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1e-16 Score=184.80 Aligned_cols=441 Identities=13% Similarity=0.055 Sum_probs=276.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 001966 518 LCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEA 597 (989)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 597 (989)
..+.|+++.|++.|++.++....-....+ .++..+...|+.++|+..+++..... .........+...|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34667777777777777665322111222 55566666677777777766666111 11222233334466666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 598 ISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEK 677 (989)
Q Consensus 598 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 677 (989)
+++|+++++.. +.+...+..++..+...++.++|++.+..+... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 77777666652 223445555556666666666666666666554 333333433333333344444466666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHH
Q 001966 678 GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNT 757 (989)
Q Consensus 678 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (989)
. +.+...+..+...+.+.|-...|.++..+-... +.+. .+.-+ ..+.|.+..+-..........
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l--------~~~~~a~~vr~a~~~~~~~~~---- 262 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQL--------ERDAAAEQVRMAVLPTRSETE---- 262 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHH--------HHHHHHHHHhhcccccccchh----
Confidence 3 224555555566666666666666555442211 1111 11000 011111111111100000000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 758 LIEFLCISNKLQEAHQLLDAMLEE-QVNPN-HDTY----TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 758 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
+.--.+.|+.-++.++.. +..|. ...| .-.+-++...|++.++++.|+.+...+.+-...+-..++.+
T Consensus 263 ------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 263 ------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred ------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 001235666667776642 22232 2222 22344677899999999999999987755445578889999
Q ss_pred HHhcCCHhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCH---
Q 001966 832 YNRMGNRSEVFVVFEEMLGKG-----IEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRM-----------PISA--- 892 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~--- 892 (989)
|...++.++|..+|+++.... ..++......|..++...+++++|..+++++.+..+ .||+
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999997731 112333356788999999999999999999987433 2332
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKG 971 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 971 (989)
.....++..+.-.|++.+|++.+++++...|. |+.....+++++...|+..+|++.++.+.. +.|+ .......+..
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHH
Confidence 34556788899999999999999999999998 999999999999999999999999987754 4886 5667888888
Q ss_pred hhcCCChhhHHHHHhhh
Q 001966 972 ENSGVDLDESKDLMKQT 988 (989)
Q Consensus 972 ~~~~g~~~~a~~~~~~~ 988 (989)
+...|+|.+|+++++++
T Consensus 494 al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 494 AMALQEWHQMELLTDDV 510 (822)
T ss_pred HHhhhhHHHHHHHHHHH
Confidence 99999999999988664
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.6e-13 Score=137.89 Aligned_cols=469 Identities=13% Similarity=0.123 Sum_probs=337.9
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001966 472 NAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFIL 551 (989)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 551 (989)
+...|......-..++++..|..+|++.+... ..+...|...+..-.+...+..|..+++..+..-+..| ..|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 34445444455555677788888888887654 23566677777777788888888888888877522222 23444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 552 GYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELRE 631 (989)
Q Consensus 552 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 631 (989)
.--..|++..|.++|+.-.+. .|+...|.+.++.-.+...++.|..+++..+- +.|++.+|.-....-.++|.+.-
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 556678888888888887765 78888888888888888888888888888875 46888888888888888888888
Q ss_pred HHHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC---hhHHHH
Q 001966 632 ALGIFLELLEK-G-LVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN--TLTYNVLIDGFCKAGD---LTEPFQ 704 (989)
Q Consensus 632 A~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~---~~~A~~ 704 (989)
+..++..+++. | -..+...+.+...--..+..++.|.-+|+-.++.= +.+ ...|..+...--+-|+ +++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 88888877764 1 11123334444444456778888999998888762 222 3334444433333444 344432
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh--hhHHHHHH-----HH---HHcCCHH
Q 001966 705 -----LFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAST--LSFNTLIE-----FL---CISNKLQ 769 (989)
Q Consensus 705 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~-----~~---~~~g~~~ 769 (989)
-++.+.+.+ |.|..+|--.+..-...|+.+...++|+.++..-||-. ..|...+- ++ ....+.+
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345555553 77899999999999999999999999999998877532 22222221 11 2467889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYT----TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVF 845 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 845 (989)
.+.++|+..++. ++....|+. ..+....++.+...|.+++-..+. .-|...++...+..-.+.++++.+..+|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999998873 333444444 344445678899999999988775 6788899999999999999999999999
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 846 EEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM-PISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 846 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
++.++ ..|.+. +|...+..-...|+.+.|..+|+-++.... ......|...++.-...|.++.|..+|+.+++...
T Consensus 461 Ekfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 461 EKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 99999 788766 888888888889999999999999997632 22345688888888999999999999999998863
Q ss_pred ccCHHhHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHh
Q 001966 924 RLGFASCRTVANDFL-----REG-----------VMDYAAKVLECMAS 955 (989)
Q Consensus 924 ~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 955 (989)
+..+|...+..-. ..| +...|+++|+++..
T Consensus 539 --h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 539 --HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred --cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 5668877776544 444 56678888888753
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.79 E-value=5.3e-15 Score=159.60 Aligned_cols=253 Identities=17% Similarity=0.196 Sum_probs=133.5
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001966 249 RVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKG 328 (989)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 328 (989)
.++-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|.-+....+...|+.++.+-...++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556667778888888888888888888887777 7777777766667777777777777777766555
Q ss_pred CCcCHHhHHHHHHHHHHcCCHHHHHHHHHH-HHH-------CCCCCCHHHH---------------HHHHHHHHhcCChH
Q 001966 329 LKLDTVAYYALIDGFVKQGDVEEAFRVKDE-LVA-------SGNQIDLVIY---------------NTLLKGFCKSGKME 385 (989)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~-------~g~~~~~~~~---------------~~li~~~~~~g~~~ 385 (989)
.|...+|+.|...|...||+.. .+..++ +.. .|.- ....| ...+....-.|-.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 5667778888888888887655 222221 111 1110 00000 01111111222223
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 386 KAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMI 465 (989)
Q Consensus 386 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (989)
.+++++..+.... ..+ +....++-+... .....++........-.|+..+|..+++.-...|+.+.|..++.+|.
T Consensus 157 qllkll~~~Pvsa-~~~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSA-WNA--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCccc-ccc--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 3333332221110 000 000011111111 11122222222211113566666666666666666666666666666
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 001966 466 TRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKR 523 (989)
Q Consensus 466 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 523 (989)
+.|++-+...|-.|+-+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666555555444443 55556666666666666666666666655555555443
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.7e-13 Score=136.31 Aligned_cols=452 Identities=13% Similarity=0.075 Sum_probs=349.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 001966 507 DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVD 586 (989)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 586 (989)
+...|.....--..++++..|.++|+..+.-. ..+...|...+.+-.+...+..|..+++..+..- +.-...|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 33444444444446788999999999999865 3366678888888899999999999999998753 222345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDK 666 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 666 (989)
+--..|++..|.++|+...+- .|+...|.+.|+.-.+....+.|..++...+-- .|++.+|-.....-.+.|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 667789999999999999874 899999999999999999999999999998764 5899999888888889999999
Q ss_pred HHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH---HHH-
Q 001966 667 AFQLYEEMCEK-GV-EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD--GSVYNALLSGCCKEEKLE---QAL- 738 (989)
Q Consensus 667 A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~---~A~- 738 (989)
|..+|...++. |- ..+...+.++..--.++..++.|..+|+-.+.. +|.+ ...|......--+-|+.. +++
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998865 21 112233444444444567788899999888875 4544 455665555555566643 332
Q ss_pred ----HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH--------HHhcCCHH
Q 001966 739 ----ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNH--DTYTTLINQ--------YCKVQNME 804 (989)
Q Consensus 739 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~~ 804 (989)
--|+..+..+|.+-.+|.-.++.....|+.++..++|++.+.. ++|-. ..|...|-. -....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3577788889988899999999999999999999999999975 44422 223222211 13568899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 805 KAKQLFLEMQQRNLKPATITYR----SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLK 880 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 880 (989)
.+.++|+..++. ++....|+. ..+.-..++.++..|.+++-.++. ..|.+.++...+..-.+.+++|...++|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999983 444444544 444445678899999999998886 8999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG--FASCRTVANDFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
++.++-+|. +..+|...+..-...|+.+.|..+|+-+++...- | ...|-..++.-...|.++.|..+|+++++.
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 999999877 8999999999999999999999999999877533 3 234677888888999999999999999875
Q ss_pred cccchhHHHHHhhhh
Q 001966 959 VSNSISLADIVKGEN 973 (989)
Q Consensus 959 ~p~~~~~~~l~~~~~ 973 (989)
.+-...|+..+....
T Consensus 537 t~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 537 TQHVKVWISFAKFEA 551 (677)
T ss_pred cccchHHHhHHHHhc
Confidence 555668877777654
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2e-14 Score=143.16 Aligned_cols=475 Identities=14% Similarity=0.114 Sum_probs=281.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHH
Q 001966 444 IIDGLCHCGDLRQINAILGEMITRGLKPNAIIYT-NLVSTYFKKNKLQEAGKLVERMRREGITPD----VSCFNSLIIGL 518 (989)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~ 518 (989)
|...|.......+|+..++-+++...-|+.-... .+.+.+.+...+.+|++.++..+..-+..+ ....+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3444555555566666666666555555543221 233455666677777777766655422212 12333344456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------CHHhHHHHHH
Q 001966 519 CKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVP------------NDVIYTSIVD 586 (989)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~ 586 (989)
.+.|+++.|+.-|+...+. .|+..+-..++.++...|+-++..+.|.+|+.....+ +....+.-+.
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 6777888888777777664 4666666666666667777777777777776532222 2222222111
Q ss_pred -----HHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 001966 587 -----GYCKEG--NIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFC 659 (989)
Q Consensus 587 -----~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 659 (989)
-.-+.. +.++++-.-.+++.--+.|+... | .+-.++.++.-+...+..+ .-..-...+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la~d--lei~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELAID--LEINKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhhhh--hhhhHHHHHH
Confidence 111111 11111111111211111111110 0 0111111111110000000 0011123467
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK--AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQA 737 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 737 (989)
+.|+++.|+++++-..++.-......-+.|-..+.- -.++..|.++-+.....+ .-+......-.......|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 888899888888877765333233333333322222 336777777777766543 33444444444444567888999
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
.+.|++.+.....-..++..++-.+...|++++|++.|-++..- +..+..+...+.+.|--..+...|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 99999988876655666777777788888999998888877532 1235666777788888888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYK 896 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 896 (989)
++.|+.+...|+..|.+.|+...|...+-.--. .-|. ..+..-|+..|....-+++|+.+|+++.- +.|+..-|.
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 455677888888888888888888887666555 4554 44666677777777888889999888764 456777777
Q ss_pred HHHH-HHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 897 AIIK-ALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 897 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
.++. ++.+.|+++.|..+|+..-.+-|+ |...+.-|..++...|-
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 6654 455678999999999888887777 77777777777666654
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.76 E-value=2.6e-13 Score=146.76 Aligned_cols=266 Identities=16% Similarity=0.158 Sum_probs=158.3
Q ss_pred CCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 001966 183 GCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPN 262 (989)
Q Consensus 183 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 262 (989)
..|+.|+..+|..++..|+..|+.+.|- +|.-|.- +..+-+...++.++.+..+.++.+.+. .|-
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~---ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI---KSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc---ccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3467777777777777777777777776 5555543 125666667777777777777776665 366
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHHhHHHHHH
Q 001966 263 VATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIG-KGLKLDTVAYYALID 341 (989)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~ 341 (989)
..||..+..+|.+.||..- ++..++ -.-.++..+...|....-..++..+.. .+.-||.. .++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 7777777777777777665 222222 111223333444444444444433221 12223332 2333
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 001966 342 GFVKQGDVEEAFRVKDELVASG-NQIDLVIYNTLLKGFCKSG-KMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKM 419 (989)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 419 (989)
...-.|-++.+.+++..+.... ..|..+ .++-..... .+++-..+-+...+ .|++.+|..++.+-.-.|++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCch
Confidence 3444555666666655543221 111111 133222222 23332222222222 47888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 001966 420 VSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNK 488 (989)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 488 (989)
+.|..++.+|.++|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+.....+|.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888888887777777655 77777888888888888888888888777666666554
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.4e-14 Score=141.86 Aligned_cols=359 Identities=13% Similarity=0.082 Sum_probs=246.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--H
Q 001966 609 ILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLT--Y 686 (989)
Q Consensus 609 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~ 686 (989)
...|...+-...-.+-+.|....|++.|...+..- +..|.+.+....-..+.+.+.. ... |...|... -
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHH
Confidence 34455544445555667788888888888777652 2234443333222233332222 221 12212111 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHH
Q 001966 687 NVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL---ASTLSFNTLIEFLC 763 (989)
Q Consensus 687 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~ 763 (989)
--+..++......+++++-.+.....|++.+...-+....+.-...++++|+..|+++.+..| .+..+|..++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 123455666667888888888888888877777666666667778889999999999998877 444455444322
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHH
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVF 842 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 842 (989)
+. +-.+ +.++-+-...--+--+.|..++++-|.-.++.++|+.+|++.++. .|. ..+|..++.-|....+...|+
T Consensus 309 ~~-~~sk-Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 KN-DKSK-LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred Hh-hhHH-HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHH
Confidence 22 1111 112221111101123456777888888888899999999998884 454 557888888899999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 843 VVFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 843 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+.|+.+++ +.| |...|+.|+++|.-.+...-|+-+|+++.+..|. |+..|..|+.+|.+.++.++|++.|..++..
T Consensus 385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999998 888 4558999999999999999999999999988765 8889999999999999999999999998887
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-Cccc-chhHHHHHhhhhcCCChhhHHHHHh
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASF----G-WVSN-SISLADIVKGENSGVDLDESKDLMK 986 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 986 (989)
+.. +..++..||..|.+.++.++|.+.+++-++. | ..|+ ..+..-|+....+.+++++|.....
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 744 6788999999999999999998888886652 2 2332 3344557777788888888776544
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.8e-13 Score=135.82 Aligned_cols=321 Identities=17% Similarity=0.233 Sum_probs=211.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHH--HcCCChH-HHHHHHHHHHhccCCCCCcCHHHHHHHH
Q 001966 159 NMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDL--LKGKKME-LFWKVWAKMNKMNAGGFEFDVYSYTTVI 235 (989)
Q Consensus 159 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (989)
+.|++. ...|.+.++.-+|..|...|...+...--.|++.- ..+.+.. .-|+.|-.|.. .-.....+|
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~----~~E~S~~sW---- 190 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRN----FGEDSTSSW---- 190 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccc----ccccccccc----
Confidence 344443 45788999999999999888887776666665543 3333332 22555555554 222223333
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001966 236 DAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLG 315 (989)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 315 (989)
+.|.+.+ ++-+... .+..+|.++|.|+|+--..+.|.+++++-.......+..+||.+|.+-. +.
T Consensus 191 ----K~G~vAd---L~~E~~P----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~ 255 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLP----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS 255 (625)
T ss_pred ----ccccHHH---HHHhhcC----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh
Confidence 3444433 3333332 3667889999999998889999999998888777788888988887543 23
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHH
Q 001966 316 DVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEA----FRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEK-AREV 390 (989)
Q Consensus 316 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~ 390 (989)
...++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 3377888888888888888888888888888877654 4566777888888888888888888888776533 4444
Q ss_pred HHHHHH----CCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCcC---HhhHHHHHHHHHhcCCHH
Q 001966 391 LNEIIR----MGIEP----NSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN----LVPS---VFTYGVIIDGLCHCGDLR 455 (989)
Q Consensus 391 ~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~ 455 (989)
+.++.. +.++| |..-+...++.|.+..+.+-|.++..-+.... +.|+ .+-|..+....|+....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432 22222 33455666777777777777777665554321 2222 234556667777777777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 456 QINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREG 503 (989)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 503 (989)
.....|+.|+-.-.-|+..+...++.+..-.|.++-.-+++..+...|
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 777777777766555666666666666666666666666666665544
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.7e-13 Score=133.63 Aligned_cols=359 Identities=17% Similarity=0.233 Sum_probs=200.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 001966 401 PNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLV 480 (989)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 480 (989)
....||..||.++|+-...+.|.+++++......+.+..+||.+|.+-.- ....+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 34455666666666666666666666666555555566666665544322 11255666666666666666666666
Q ss_pred HHHHccCCHHHH----HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCC---C-CHHHHH
Q 001966 481 STYFKKNKLQEA----GKLVERMRREGITPDVSCFNSLIIGLCKAKRMDE-ARIYLVEMLR----RGLK---P-NIHSFR 547 (989)
Q Consensus 481 ~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~---~-~~~~~~ 547 (989)
.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ |..++.+.+. +.++ | |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 666666655443 4455666667777777777777776666655433 3334444332 1122 2 334466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 548 AFILGYCMAGEMQTAGRFFNEMLNS----GLVPND---VIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLI 620 (989)
Q Consensus 548 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 620 (989)
..+..|....+.+-|.++..-+... -+.|+. .-|..+....|+....+.-...|+.|+-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 6666777777777777766554421 112221 235566777777778888888888887766667777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCh
Q 001966 621 NGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKA-GDL 699 (989)
Q Consensus 621 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 699 (989)
++..-.+.++-.-+++..++..|..-+... -++++..+......|+...-..+-....+. -++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 777777777777777776666543322221 122333333333333323222222222111 122
Q ss_pred hHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChhhHH---HHHHHHHHcCCHHHHHH
Q 001966 700 TEPF-QLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTLSFN---TLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 700 ~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~l~~~~~~~g~~~~A~~ 773 (989)
.++. ..-.++.+..+ .....+..+-.+.+.|..++|.+++....+.+- |.....+ .+++.-...+....|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 2222 12233344333 344555666667778888888888887765543 3333344 44445556667777777
Q ss_pred HHHHHHHC
Q 001966 774 LLDAMLEE 781 (989)
Q Consensus 774 ~~~~~~~~ 781 (989)
.++-+...
T Consensus 583 ~lQ~a~~~ 590 (625)
T KOG4422|consen 583 VLQLASAF 590 (625)
T ss_pred HHHHHHHc
Confidence 77777654
No 39
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.1e-11 Score=129.79 Aligned_cols=250 Identities=11% Similarity=0.134 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHH
Q 001966 157 VFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVID 236 (989)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (989)
+-...+.+|+.+|.+++++-...+. |..|+. -.+|..+.+ -..|.+.++...+.+ . .+...-.+.++.
T Consensus 483 vp~KVi~cfAE~Gqf~KiilY~kKv---GyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q----~-~~~~~die~I~D 550 (1666)
T KOG0985|consen 483 VPAKVIQCFAETGQFKKIILYAKKV---GYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQ----D-EEPLADIEQIVD 550 (1666)
T ss_pred CcHHHHHHHHHhcchhHHHHHHHHc---CCCccH---HHHHHHHHc-cChhHHHHHHHHhhc----c-CCCcccHHHHHH
Confidence 3456788999999999998877666 888874 455666666 568888888777766 2 223444667777
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001966 237 AYFKVRNAEEGKRVFSEMGEKGCRPNV-ATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLG 315 (989)
Q Consensus 237 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 315 (989)
.+......+.+..++-.+++.. .|+. ..-+.++..-.. .|-.+-+.....+.. ..+-+..+...|.+.|-+.
T Consensus 551 lFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~-----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~q 623 (1666)
T KOG0985|consen 551 LFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLV-----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQ 623 (1666)
T ss_pred HHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhc-----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHH
Confidence 7888888888888877777642 2332 222222222111 112222222222111 2223566667777778777
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHH-----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001966 316 DVRLVLSELIGKGLKLDTVAYYAL-----IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREV 390 (989)
Q Consensus 316 ~a~~~~~~m~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (989)
+|++.+.++..- . -.++.+.+ .-.|+..-.++++.+.++.|...++..|..+.-.+..-|+..=-.+..+++
T Consensus 624 raLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~l 700 (1666)
T KOG0985|consen 624 RALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIEL 700 (1666)
T ss_pred HHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 777776665431 1 01111111 123444456777777888887777776776666666666665555566666
Q ss_pred HHHHHHC-----------CCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 391 LNEIIRM-----------GIEPNSRTYTSLIQGYCRMRKMVSAFELLDE 428 (989)
Q Consensus 391 ~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (989)
|+....- ++..|+...-.-|.+.|+.|++.+..++.++
T Consensus 701 FE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 701 FESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 6655321 2344555555667777888887777665543
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.1e-14 Score=146.00 Aligned_cols=499 Identities=15% Similarity=0.114 Sum_probs=324.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 001966 437 SVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLII 516 (989)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 516 (989)
+..-+..+++-+....++.-|.-+-++....+..|+.. -.+..+++-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 44556666666666677777777777776665444443 34567777788888887777654321 236667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 001966 517 GLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAE 596 (989)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 596 (989)
++.+..+++.|..++..-.. .-+...|-.-= + ...-..+.+. ++. ++......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~-~-~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKD-A-ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchh-h-hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 78888888888877763210 00111100000 0 0000000000 000 001111111122234444556667
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHH-HhcCCHHHHHHHH
Q 001966 597 AISKFRCMLARGILPEVQTYSVL---INGLSKKLELREALGIFLELLEK-GLVPDVDTYNSLITSF-CKICDVDKAFQLY 671 (989)
Q Consensus 597 A~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~-~~~g~~~~A~~~~ 671 (989)
|...|.+.+.. |...+..+ +....-. ..+-..++..+--. -...+......+.... ++.-+ +.....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccC
Confidence 77666666543 33333322 2211110 11112222110000 0001111111111111 01000 0000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS 751 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 751 (989)
.+..-.+...+........+-+...+++.+..++++...+.. |+....+..-|..+...|+..+-..+-.++++..|..
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 001111334466666677777888899999999999999874 7777777777788889999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
..+|.+++..|.-.|++++|.+.|.+....... -...|...++.|.-.|..|.|+..+....+. ++-...-+.-++.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 999999999999999999999999998854222 2357999999999999999999999888773 22233345556677
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHc
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK----RMP--ISAEAYKAIIKALCK 904 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~ 904 (989)
|.+.++.+-|..+|.++.. +.|.+. ..+.++-.....+.+.+|..+|+..++. +.+ .-..++..|+.+|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 8889999999999999998 999666 7888888888899999999999998842 111 134568999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISL 965 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 965 (989)
++++++|+..+++++...|+ ++.++..+|-+|...|+.+.|...|.+++ .+.||..+.
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~ 525 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFI 525 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHH
Confidence 99999999999999999998 99999999999999999999999999985 468986443
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=6e-14 Score=139.78 Aligned_cols=480 Identities=12% Similarity=0.103 Sum_probs=316.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH
Q 001966 475 IYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCF-NSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHS----FRAF 549 (989)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l 549 (989)
+...|..-|.......+|+..++-+.+..+-|+.-.. ..+...+.+..++.+|+++++-.+..-+..+..+ .+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3444556677777888999999888877666765432 2345667788899999999988887633223222 3333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------------HHHH
Q 001966 550 ILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEV------------QTYS 617 (989)
Q Consensus 550 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------~~~~ 617 (989)
.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+.-...||. ...+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 44567889999999999987765 577777666676777788999999999998875322222 2222
Q ss_pred HHHH-----HHHhc--CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 618 VLIN-----GLSKK--LELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLI 690 (989)
Q Consensus 618 ~li~-----~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 690 (989)
.-|. ..-+. .+.++++-.-..++.--+.|+-.. + .+-+++.++.-.-..+..+.. -.-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~la~dle--i~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAELAIDLE--INKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhhhhhhh--hhHH
Confidence 2111 11111 011122211111211111111100 0 111122222111110010111 1123
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC-K-EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL 768 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 768 (989)
.-|.+.|+++.|+++++-+.+.+...-...-+.|-..+. + ..++.+|..+-+..+....-+..+...-+..-...|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 347889999999999998887654433333333333322 2 34677888888888776655555555555555678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEM 848 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 848 (989)
++|.+.|++.+.....-....|+ +.-.+-..|+.++|++.|-++..- +..+..+...++..|....+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999998653222223333 344567889999999999887652 3445678888999999999999999999998
Q ss_pred HhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH
Q 001966 849 LGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGF 927 (989)
Q Consensus 849 ~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 927 (989)
.. +-|+.. ....|+..|-+.|+...|.+.+-...+.- +-+.++..+|+.-|....-+++|+.+|+++.-..| +.
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryf-p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp--~~ 659 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF-PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP--NQ 659 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc-CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc--cH
Confidence 87 777555 78889999999999999999876666543 44899999999999999999999999999877664 45
Q ss_pred HhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCCh
Q 001966 928 ASC-RTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDL 978 (989)
Q Consensus 928 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 978 (989)
.-| ..++.++.+.|+|+.|..+|+...++ ++.|.+.+--|.+....-|..
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 555 56778899999999999999998764 444666666666666555543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.8e-16 Score=164.60 Aligned_cols=282 Identities=15% Similarity=0.119 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 663 DVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV--PLDGSVYNALLSGCCKEEKLEQALEL 740 (989)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 740 (989)
+..+|...|..+.+. +.....+...+..+|...+++++|.++|+.+.+... --+..+|.+.+.-+- +.-+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 456777777774443 233345556667777777788888888877776420 124556666554432 22222233
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLK 819 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 819 (989)
-+.++...+..+.+|..++.+|.-+++.+.|++.|++.+.. .| ...+|+.+++-+.....+|+|...|+..+. +.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 44555666677777777777777777777777777777753 44 556777777777777777777777777765 34
Q ss_pred CC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 820 PA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 820 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
|. ..+|..++..|.+.++++.|.-.|+++++ ++|.+. ....++..+.+.|+.|+|+++++++...++. |+-.-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 43 34677777777777777777777777777 777655 4444567777777777777777777777665 6666666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.+..+...+++++|+..++++.+.-|+ +..++..+|.+|.+.|+.+.|..-|-.|.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 677777777777777777777777777 7777777777777777777777777776543
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8e-13 Score=133.01 Aligned_cols=365 Identities=14% Similarity=0.104 Sum_probs=267.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-H
Q 001966 573 GLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT-Y 651 (989)
Q Consensus 573 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~ 651 (989)
+...|...+-.....+-+.|....|++.|...+.. .+-.-..|..|.... .+.+.+. .....+...+... -
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHhcCcccchHHHH
Confidence 34556666666666777889999999999888764 222334444443322 2222222 1211111101111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHH
Q 001966 652 NSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVP---LDGSVYNALLSGC 728 (989)
Q Consensus 652 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~ 728 (989)
--+..++-...+.+++..-.......|++.+...-+....+.....++++|+.+|+++.+.+ | .|..+|..++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH-
Confidence 12344566666888888888888888888777666666677778889999999999999873 2 255666655432
Q ss_pred HhcCCHHHHHHHH-HHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 729 CKEEKLEQALELF-RDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAK 807 (989)
Q Consensus 729 ~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 807 (989)
+..+ ..+..+ ......+.-.+.+...++..|.-.++.++|..+|++.++.+.. ....|+.+++-|...++...|+
T Consensus 309 -~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2221 222222 2333334456778888899999999999999999999986422 5578999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 808 QLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 808 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.++..++-+ +-|...|..|+.+|.-.+...-|+-+|+++.+ ..|++ ..|..|+++|.+.++.++|++.|+.++..
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999843 45677999999999999999999999999999 88855 49999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----Ccc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG-----FRL-GFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+-. +..++..|+..|.+.++.++|...|++-++.. ..+ ...+..-|+.-+.+.+++++|.........
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 644 77899999999999999999999999987622 111 234455688999999999999888776653
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-12 Score=137.92 Aligned_cols=306 Identities=14% Similarity=0.052 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001966 630 REALGIFLELLEKGL-VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDE 708 (989)
Q Consensus 630 ~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 708 (989)
.++++.+++.++.+. .|++..|-++ -|+..++++.|.+...+.++.+-..+...|..|+-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 456666666666543 3333333333 3556667777777777777765555677777777777777777777777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC
Q 001966 709 MTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QVNPN 786 (989)
Q Consensus 709 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 786 (989)
.... ++.|......-++.-..-++.++++.....++..--..... ...++-....+....+.-. .....
T Consensus 539 al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 539 ALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCccccccc
Confidence 6554 23333333333333344566666666655554321000000 0011111111111111100 00111
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 001966 787 HDTYTTLINQYCKVQN---MEKAKQLFLEMQQRNLKP--A------TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 787 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 855 (989)
..++..+.......+. .+.. +......| + ...|...+..+.+.++.++|...+.++.. +.|
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~ 681 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDP 681 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cch
Confidence 1222222221111110 1111 11111122 2 23455666777888888888888888777 777
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHHCCCccCHHhHHH
Q 001966 856 DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR--LLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 856 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~ 932 (989)
-.. .|+..+..+...|.+++|.+.|..++..+|. +......++.++.+.|+..-|.. ++..+++.+|. ++.+|+.
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~ 759 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYY 759 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 555 6666778888888999999999888888766 77888888888888888777777 88888888888 8899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 001966 933 VANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
||.++.+.|+.++|.+.|.-+.+.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhh
Confidence 999999999999998888887653
No 45
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-12 Score=137.97 Aligned_cols=477 Identities=17% Similarity=0.088 Sum_probs=300.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 485 KKNKLQEAGKLVERMRREGITPDVSCFNSLIIG---LCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQT 561 (989)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 561 (989)
+.+..++++.-+......+...+..++-.+-.+ |...++.+++ ++-...+.-.-|. .+.++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~R--------------e~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPR--------------ENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhcccc--------------ccHHH
Confidence 455666777777766666666565555544433 2334555555 2222222222222 12222
Q ss_pred HHH----HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 562 AGR----FFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFL 637 (989)
Q Consensus 562 A~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 637 (989)
+.- .+.++....+..|..+|..+.-+....|+++.+.+.|++.... .......|..+...+...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 211 1222222334556777777888888888888888888887653 33456678888888888888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHH-HH-HhcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CChh
Q 001966 638 ELLEKGLVPDVDTYNSLIT-SF-CKICDVDKAFQLYEEMCEK--GV--EPNTLTYNVLIDGFCKA-----------GDLT 700 (989)
Q Consensus 638 ~~~~~~~~p~~~~~~~li~-~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~ 700 (989)
+.......|+..+--.++. .| -+.+.+++++++-.++++. +. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7766544444333333333 23 2456777777777666652 11 11233344443334321 1235
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAML 779 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 779 (989)
++++.+++..+.+ +.|+.+...+.--|...++.+.|....++.++.+. .+...|..|+-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 6777888887765 44444444455566777889999999999998866 888888888888889999999999988877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHH
Q 001966 780 EEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR---------------------N-------LKPATITYRSLLNG 831 (989)
Q Consensus 780 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~p~~~~~~~l~~~ 831 (989)
+. ...|......-++.-..-++.++|+.+...+... | ......++..+..-
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 43 1112222222233333456677776655544321 0 00011122222211
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF--------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
....+ ..+..-.. +......|+.. .|...+..+.+.++.++|...+.++....+. ....|+..+..+.
T Consensus 620 ~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLE 695 (799)
T ss_pred HHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHH
Confidence 11100 00000000 11111223222 2444567888899999999898888876544 7788999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHH--HHHHHHhCCCcc-cchhHHHHHhhhhcCCChhh
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAK--VLECMASFGWVS-NSISLADIVKGENSGVDLDE 980 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 980 (989)
..|+.++|.+.|..++..+|+ ++.+...+|.++.+.|+..-|.. ++..+++. .| +++.|+.++....+.|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHH
Confidence 999999999999999999998 99999999999999999888877 89888764 78 59999999999999999999
Q ss_pred HHHHHhh
Q 001966 981 SKDLMKQ 987 (989)
Q Consensus 981 a~~~~~~ 987 (989)
|-+.|..
T Consensus 773 Aaecf~a 779 (799)
T KOG4162|consen 773 AAECFQA 779 (799)
T ss_pred HHHHHHH
Confidence 9988863
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.2e-13 Score=139.75 Aligned_cols=221 Identities=13% Similarity=0.171 Sum_probs=180.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.-.|+.-.|..-|+..++.... +...|.-+..+|....+.++....|.++...+|.++.+|..-++.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3468888999999999887533 333477788889999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 774 LLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 774 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
-|++.++. .| +...|..+.-+..+.++++++...|++..++ ++..+..|+..+..+...++++.|.+.|+..++
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999875 34 4566777777777889999999999999885 566678999999999999999999999999998
Q ss_pred CCCCHH-------HHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 853 IEPDNF-------TYY--VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 853 ~~p~~~-------~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+.|+.. .+. .++..- -.+++..|++++.++++.+|+ ...+|..|+....+.|+.++|+++|++.....
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777621 111 111111 238899999999999998876 77889999999999999999999999977654
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=7e-17 Score=168.39 Aligned_cols=260 Identities=15% Similarity=0.224 Sum_probs=104.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRG-VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN 766 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 766 (989)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|+..+++++..++.+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45667777888888888886554442 234555566666677778888888888888887776666666666666 6788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 001966 767 KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN-LKPATITYRSLLNGYNRMGNRSEVFVVF 845 (989)
Q Consensus 767 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 845 (989)
++++|..++++..+. .++...+..++..+...++++++.++++++.... .+++...|..++..+.+.|+.++|+..+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888776654 2455666777777888888888888888876532 3456677888888888888888888888
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 846 EEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 846 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+++++ ..|++. ....+++.+...|+.+++.++++...+.. +.++..|..++.++...|+.++|+..++++.+..|+
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 88888 788655 66677888888888888888777776654 236667788888888888888888888888888877
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 925 LGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 925 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
|+.....+++++...|+.++|.+++.++.
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 88888888888888888888888887764
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=7.8e-14 Score=140.98 Aligned_cols=418 Identities=17% Similarity=0.103 Sum_probs=243.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 001966 509 SCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPN-IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPND-VIYTSIVD 586 (989)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~ 586 (989)
..+-+..+-|.+.|++++|++.|.+.++. .|+ +.-|.....+|...|+++++.+.-.+.++. .|+- ..+.--..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 34555667777888888888888888875 456 777888888888888888888887777765 3332 34555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCCHhhHHHHHHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGI--------FLELLEKGLVPDVDTYNSLITSF 658 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~p~~~~~~~li~~~ 658 (989)
++-..|++++|+.-. |-.++..++....-.--+.++ .++-...+-+|...+ .+.|..|
T Consensus 192 A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~sy 257 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASY 257 (606)
T ss_pred HHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHH
Confidence 666667777665322 222222222222211122222 222222111222111 1122222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCC---C---CCCH------HHHHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKA-GDLTEPFQLFDEMTKRG---V---PLDG------SVYNALL 725 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~---~---~~~~------~~~~~l~ 725 (989)
...=..+ ....+...+-..|...-..+-..+... ..+..|...+.+-...- . ..|. .+...-.
T Consensus 258 f~sF~~~----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 258 FGSFHAD----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred Hhhcccc----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 1110000 000000000011111111111111110 12333333333221100 0 0111 1111112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
..+.-.|+.-.|.+-|+..+...+.+...|..++.+|....+.++..+.|.+..+.... ++.+|..-..++.-.+++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 22334677888888888888887755555777777888888888888888888765322 55667777777777788888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 806 AKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
|+.=|++.+. +.|+ ...|..+.-+..+.++++++...|++.++ --|+ .+.|+..+.++..++++++|.+.|+.+
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 8888888877 4444 55777777777788888888888888887 4454 347777778888888888888888888
Q ss_pred HhCCCC-----CCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 884 FDKRMP-----ISAE--AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 884 ~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
++..+. .++. +...++. +.=.+++.+|+.++.++++.+|+ ...++..|+..-.+.|+.++|+++|++...
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 876433 1222 2222221 11237888888888888888877 777888888888888888888888887654
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=6.3e-15 Score=155.52 Aligned_cols=275 Identities=16% Similarity=0.098 Sum_probs=225.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL---ASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
+..+|+..|..+... +.....+...+..+|...+++++|.++|+.+.+..| .+...|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 457889999885544 455667778889999999999999999999998877 455566665544322 222333
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 775 L-DAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 775 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
+ +.+++. -+-.+.+|.+++++|.-+++.+.|++.|++..+ +.| ...+|..++.-+.....+|.|...|+.++.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 3 333333 233678999999999999999999999999988 566 567888888888889999999999999988
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
+.|+.. +|+-++-.|.++++++.|+-.|+++++.+|. +..+...++..+.+.|+.++|+.+++++...+|+ ++..-+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 888776 8888999999999999999999999998877 8888889999999999999999999999999988 999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMK 986 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 986 (989)
..+.++...+++++|.+.++++++ +.|+ ...++.++..+.+.|+.+.|..-|.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 999999999999999999999976 4886 5667888999999999998887653
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=1.8e-09 Score=113.59 Aligned_cols=565 Identities=13% Similarity=0.127 Sum_probs=292.0
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 001966 334 VAYYALIDGFVKQGDVEEAFRVKDELVAS-GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQG 412 (989)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 412 (989)
..|......+.++|++......|+..+.. -+.-....|...+......|-.+-+..++++.++. ++..-+--|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34445555666777777777777777654 11112346777777667777778888888888754 33345666777
Q ss_pred HHhcCChhHHHHHHHHHHhCC------CCcCHhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCH--hhHHHHHH
Q 001966 413 YCRMRKMVSAFELLDEMKKKN------LVPSVFTYGVIIDGLCHCGDLR---QINAILGEMITRGLKPNA--IIYTNLVS 481 (989)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~li~ 481 (989)
+++.+++++|.+.+....... .+.+...|.-+-+...+..+.- ....+++.++.. -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 788888888888777765431 1222233333333333322211 112222222221 2221 23445555
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 482 TYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQT 561 (989)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 561 (989)
.|.+.|.+++|..+|++.... ...+.-|..+.+.|+.-....-+..+= ...+.+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 555555555555555544432 112222333333333211111111000 0000000000 0001111
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 562 AGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLE 641 (989)
Q Consensus 562 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 641 (989)
...-|+.+.+... -+++...-+.-+.++..|..-+. +..|+..+-...+.+++.
T Consensus 322 ~~a~~e~lm~rr~------------------------~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 322 HMARFESLMNRRP------------------------LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHHHHhccc------------------------hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH
Confidence 2222222221110 00000000001223334433322 223444555555555544
Q ss_pred CCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 001966 642 KGLVPD------VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN---TLTYNVLIDGFCKAGDLTEPFQLFDEMTKR 712 (989)
Q Consensus 642 ~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 712 (989)
. +.|. ...|..+...|-..|+++.|..+|++..+...+-- ..+|......-.+..+++.|+++++.....
T Consensus 376 ~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 376 T-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred c-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 3 1111 22345555555666666666666666554422211 223444444444455556666655554321
Q ss_pred -----------CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001966 713 -----------GVP------LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLL 775 (989)
Q Consensus 713 -----------~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 775 (989)
+.+ -+...|...++.....|-++....+|+.+++..+..+......+..+....-++++.+.|
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 011 134456666777777788888888888888888766666666666677777788888888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 776 DAMLEEQVNPNH-DTYTTLINQYCK---VQNMEKAKQLFLEMQQRNLKPATIT--YRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 776 ~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
++-+..-.-|++ ..|+..+.-+.+ ..+.+.|..+|++.++ |++|...- |...+..-.+.|....|+.+|+++.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 877654333443 456655554433 2468889999998888 66776543 3333333445688888888888876
Q ss_pred hCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHC-CC
Q 001966 850 GKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE---AYKAIIKALCKREEYSEALRLLNEMGES-GF 923 (989)
Q Consensus 850 ~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 923 (989)
. ++.+... .|+..+.-....=-......+|+++++.= |+.. .....++.-++.|+.+.|..+|.-..+. .|
T Consensus 614 ~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 614 S-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred h-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC--ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 5 2444333 45555422222222334556777777652 2332 3445566778888999998888776554 44
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 924 RLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 924 ~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
..+...|...=..-.+.|+-+--.+++
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456777777777788888844433333
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=1e-13 Score=152.14 Aligned_cols=290 Identities=14% Similarity=0.036 Sum_probs=202.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD-GSVYNALLSGCCKEEKLEQ 736 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 736 (989)
...|+++.|.+.+.+..+. .|+. ..+-.....+.+.|+.+.|.+++.++.+.. +.+ ..........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCCCHHH
Confidence 4678899998888877665 3443 334444667778889999999988887652 222 2344445777788888999
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYT-TLIN---QYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~ 812 (989)
|...++.+.+..|.+..+...++..+...|++++|.+.+..+.+.+.. +...+. .... .+...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998888888888888888888999999999888888877544 332231 1112 22333444445556666
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 813 MQQRNL---KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY---YVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 813 ~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.+... +.+...+..++..+...|+.++|.+.+++.++ ..||+... ..........++.+++++.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 666321 12667788888888888888888888888888 56666521 22223334457788888888888877
Q ss_pred CCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 887 RMPISA--EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 887 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.+. ++ .....+++.+.+.|++++|.+.|+++......|++..+..++..+.+.|+.++|.+++++.+.
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 654 66 677788888888888888888888533322235666677888888888888888888887643
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=1.7e-13 Score=150.46 Aligned_cols=289 Identities=12% Similarity=0.009 Sum_probs=189.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHHcCCHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAST-LSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 772 (989)
...|+++.|.+.+.+..+.. +.....+-....+..+.|+++.|.+.+.++.+..+.+. ......+..+...|++++|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34678888888887776642 22334444556667777888888888888777665332 34444577777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHhHHHHHHHHHH
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYR---SLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
..++++.+..+ -+...+..+...+...|++++|.+++..+.+.+..+...... ....+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888877642 255667777788888888888888888888765332221111 11122233334444455666666
Q ss_pred hCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 850 GKGIEP-----DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA-YKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 850 ~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
+ ..| +...+..++..+...|++++|.+.+++.++..++..... ...........++.+.+.+.+++..+..|
T Consensus 253 ~--~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 K--NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred H--HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 5 334 445666777788888888888888888887654422111 11122223345777888888888887777
Q ss_pred ccCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 924 RLGF--ASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 924 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+ ++ .....+|+++.+.|+|++|.+.|+++......||+..+.+++..+.+.|+.++|.+++++
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 77 667788888888888888888888544444577777777888888888888888877765
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=3.6e-09 Score=111.32 Aligned_cols=565 Identities=11% Similarity=0.125 Sum_probs=306.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 302 VNLIYGFSAAKRLGDVRLVLSELIGK-GLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCK 380 (989)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 380 (989)
...+.-+.++|+...-...|+..... -+.-....|.-.+......|-.+-+..++++.++. +...-+--|..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 33333344444444444444444332 11122233444444444445555555555555543 22223344444555
Q ss_pred cCChHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCcC--HhhHHHHHHHHH
Q 001966 381 SGKMEKAREVLNEIIRMG------IEPNSRTYTSLIQGYCRMRKM---VSAFELLDEMKKKNLVPS--VFTYGVIIDGLC 449 (989)
Q Consensus 381 ~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~ 449 (989)
.++.++|.+.+...+... -+.+...|..+-+...+.-+. -....+++.+..+ -+| ...|++|.+-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 555555555555443210 123333444444433332221 1222333333332 223 345667777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH--HCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 001966 450 HCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMR--REGITPDVSCFNSLIIGLCKAKRMDEA 527 (989)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~g~~~~~~~~~~li~~~~~~g~~~~A 527 (989)
+.|.++.|..+|++.+.. ...+.-|+.+.+.|..-....-+..+ + +. +.|-.-+... ++-.
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~d-------------l~~~ 322 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVD-------------LELH 322 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhh-------------HHHH
Confidence 777777777777776654 22333344444554432211111110 0 10 1111111111 1111
Q ss_pred HHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHhHHHHHHHHHh
Q 001966 528 RIYLVEMLRRG-----------LKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN------DVIYTSIVDGYCK 590 (989)
Q Consensus 528 ~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 590 (989)
+.-|+.+.... -+-++..|..-+. +..|+..+-...+.++... +.|. ...|..+...|-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 22222222211 1123444444333 2346666666777766643 1111 1357777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPE---VQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKA 667 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 667 (989)
.|+++.|..+|++..+-..+-- ..+|..-...-.++.+++.|+++++..... |.... ..+...+..-++
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQA 471 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHH
Confidence 8888888888888776533221 235555566666777777787777666543 22111 122232322111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001966 668 FQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEK 747 (989)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 747 (989)
. + ..+...|..+++.--..|-++....+++.+....+. ++.........+....-++++.+.|++-+..
T Consensus 472 r-l---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 472 R-L---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred H-H---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 1 1 114556777777777788899999999999886543 3333333334445566688999998888776
Q ss_pred CC-CCh-hhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 748 GL-AST-LSFNTLIEFLCI---SNKLQEAHQLLDAMLEEQVNPNHD--TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 748 ~~-~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
-+ |.. ..|+..+.-+.+ .-.++.|..+|++.++ |++|... .|......--+.|-...|+.++++.... +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~ 618 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKE 618 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCH
Confidence 55 443 345554443332 3478999999999998 5566442 2333333334568888999999997653 444
Q ss_pred CH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH
Q 001966 821 AT--ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFT---YYVMIDAHCKEGNVMEALKLKDLIFDK-RMPISAEA 894 (989)
Q Consensus 821 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 894 (989)
.. ..|+..+.-....=-+.....+|+++++ .-|+... ....++.-++.|..+.|..+|....+. +|..+.+.
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 42 3566666544433345667889999999 6787663 334567778899999999999888776 67778888
Q ss_pred HHHHHHHHHccCCHHHHHHHH
Q 001966 895 YKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~ 915 (989)
|...-.--.+.|+-+--.+++
T Consensus 697 W~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 999888888999944444433
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=2.5e-13 Score=148.12 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=215.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLT-YNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYN--ALLSGCCKEEKLEQA 737 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 737 (989)
.|+++.|.+......+.. ++... |........+.|+++.|...+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887777655432 22233 333344457888999999999988875 44443222 336677888999999
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD-------TYTTLINQYCKVQNMEKAKQLF 810 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~ 810 (989)
...+++..+..|.+..+...+...|.+.|++++|.+++.++.+.+..++.. +|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999988888888899999999999999999999998765443221 2333333333444556666677
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 811 LEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 811 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
+.+.+. .+.++.....++..+...|+.++|...+++.++ ..|+..... +.+....++.+++++..++..+..|.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 766543 355777888999999999999999999999988 455554322 23344569999999999999988776
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
|+..+..+++.+.+.|++++|.+.|+++++.. |+...+..++.++.+.|+.++|.+++++.+..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999887 45677889999999999999999999987653
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=4.1e-16 Score=162.60 Aligned_cols=258 Identities=18% Similarity=0.155 Sum_probs=116.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKG--LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
.+...+.+.|++++|++++++..... +.+...|..++......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997665554 466667777888888999999999999999976433 55667777776 689
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGI-EPDNFTYYVMIDAHCKEGNVMEALKL 879 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 879 (989)
+++++|.+++.+..+. .++...+..++..+...|+++++..+++++....- .++...|..++..+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 46667778888899999999999999999886322 33445777888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWV 959 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 959 (989)
++++++..|. |..+...+++.+...|+.+++..+++...+..+. ++..+..++.+|...|++++|..+++++.+. .
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~ 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKL--N 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhccccccccccccccccccc--c
Confidence 9999998766 8899999999999999999999999988877655 7888899999999999999999999998764 6
Q ss_pred c-cchhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 960 S-NSISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 960 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
| |+.....++..+...|+.++|.++.+++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 7 6788899999999999999999988764
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.2e-12 Score=129.74 Aligned_cols=505 Identities=12% Similarity=0.037 Sum_probs=324.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 001966 402 NSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVS 481 (989)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (989)
+..-+..+..-+....++..|.-+-++....+..|+. ---+..+++-.|+++.|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 4455667777777788899999888888877655444 445778899999999998887665332 346777777788
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 482 TYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQT 561 (989)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 561 (989)
.+.+..++++|..++..... .-+...|-.--. ...-..+.+. ++.. .......+-.-...|......++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 88899999999998873311 001111100000 0000000010 0000 00000011111122334445555
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 001966 562 AGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARG----ILPEVQTYSVLINGL-SKKLELREALGIF 636 (989)
Q Consensus 562 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~-~~~g~~~~A~~~~ 636 (989)
|...|.+.+.. |...+..+...-... .-.+.+.+..+.... ..-+......+.... ++..+ ++....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccC
Confidence 55555555432 222221111110000 000111111111100 000111111111111 00000 0000000
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 001966 637 LELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPL 716 (989)
Q Consensus 637 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 716 (989)
.+..-.+..-+......-.+-+...+++.+..++.+...+.. ++....+..-|..+...|+..+-..+-.++.+. .|.
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCC
Confidence 001111233356666667777888999999999999998873 446666666677888999999888888888887 577
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
.+.+|-+++--|...|+.++|.+.|.+....++.-..+|...+..+.-.|.-|+|...+..+.+.- +-...-+.-+.--
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 889999999999999999999999999999988888899999999999999999999998887531 1111112234556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCCCC----HHHHHHHHHHHHhc
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG--KGIEPD----NFTYYVMIDAHCKE 870 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~p~----~~~~~~l~~~~~~~ 870 (989)
|.+.++++-|.++|.+.... .|.|+..++.++-.....+.+.+|..+|+..++ +.+.+. ..++.+|+.++.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 78899999999999998873 244677888888888889999999999999885 222222 23688899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
+.+++|+..+++++...+. +..++..++-+|...|+++.|++.|.+++...|. +..+-..|.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~-n~~~~~lL~ 530 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD-NIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 9999999999999998766 9999999999999999999999999999998876 544433343
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.8e-11 Score=116.56 Aligned_cols=472 Identities=14% Similarity=0.149 Sum_probs=286.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 001966 412 GYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQE 491 (989)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 491 (989)
-+....++..|+.+++--...+-.....+-.-+..++.+.|++++|...+..+.+.. .++...+-.|..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344456666666666655443322222334445666777888888888887777643 4555566666666666788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 492 AGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLN 571 (989)
Q Consensus 492 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 571 (989)
|..+..+..+ ++..-..+...-.+.++-++-..+...+.+. ...-.++.......-.+.+|++++..++.
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777655432 2333333444444667766666666555432 22334455555555678888888888875
Q ss_pred CCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 001966 572 SGLVPNDVIYTS-IVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDT 650 (989)
Q Consensus 572 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 650 (989)
. .|+-...|. +.-+|.+..-++-+.+++.-.+++ ++.+....|.......+.=+-..|..-..++.+.+-..
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 4 344444444 344667778888888888877775 45556666666655555433344444444444432211
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 651 YNSLITSFCK-----ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALL 725 (989)
Q Consensus 651 ~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (989)
|- .+.-.++ -.+-+.|++++-.+.+. .|. .-..|+--|.++++..+|..+.+++.-. .|-......+.
T Consensus 253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv 325 (557)
T KOG3785|consen 253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV 325 (557)
T ss_pred ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH
Confidence 11 1222222 23446788877776654 232 2234555688899999999988876532 34343333333
Q ss_pred HHHH-h----cCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 726 SGCC-K----EEKLEQALELFRDMLEKGL--ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798 (989)
Q Consensus 726 ~~~~-~----~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 798 (989)
.+-. + .....-|...|+-.-+.+. +......+++..+.-..++++++-++..+...-...|...+ .+..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHH
Confidence 3221 1 1123344444444434433 34445667777777788899999999988876444444444 4788999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHH-HHHHHHhcCCHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP-DNFTYYV-MIDAHCKEGNVMEA 876 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~-l~~~~~~~g~~~~A 876 (989)
..|++.+|.++|-++....++.+..-...|+++|.+.++.+.|+.++-++- .| +..+... +++-|.+.+.+=-|
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888754444344444567789999999999988876552 33 3334444 44888899998888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
-+.|+.+...+ |+++.|. |+-.....+|..+.....+
T Consensus 481 aKAFd~lE~lD--P~pEnWe---------GKRGACaG~f~~l~~~~~~ 517 (557)
T KOG3785|consen 481 AKAFDELEILD--PTPENWE---------GKRGACAGLFRQLANHKTD 517 (557)
T ss_pred HHhhhHHHccC--CCccccC---------CccchHHHHHHHHHcCCCC
Confidence 88888877654 5566664 4444555666666555433
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=3.6e-13 Score=146.82 Aligned_cols=281 Identities=9% Similarity=0.003 Sum_probs=219.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHHcCCHHHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAST-LSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
.|+++.|.+.+....+.. +.....+.....+..+.|+++.|...+.++.+..+... ......+..+...|++++|...
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999998888766642 11233343345555789999999999999998776443 3333447889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT-------ITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+....+++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999864 336778889999999999999999999999987544322 1333334333344455566666666
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 848 MLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 848 ~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+-+ ..| +......++..+...|+.++|.+.+++..+. +++....... .....|+.+++++.+++..+..|+ |
T Consensus 255 lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~--~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 255 QSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLI--PRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred CCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH--hhccCCChHHHHHHHHHHHhhCCC-C
Confidence 543 234 4557778889999999999999999999984 3455433333 334569999999999999999998 9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+..+..+|..+...|+|++|.+.|+++.+. .|+...+..++..+.+.|+.++|.+++++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999765 79998899999999999999999998875
No 59
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9e-09 Score=113.33 Aligned_cols=347 Identities=13% Similarity=0.143 Sum_probs=168.9
Q ss_pred HHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC
Q 001966 198 RDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVG 277 (989)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 277 (989)
+.+.-+|++++|..+-....+ ++-.+..|-+..=..=...|..---+.+|.-+...|. -|..---.+++.-..+|
T Consensus 368 neLfaqG~Y~eAAkvAAsSPr----gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGk-LNk~ETLEL~RpVL~Q~ 442 (1666)
T KOG0985|consen 368 NELFAQGEYEEAAKVAASSPR----GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGK-LNKYETLELCRPVLQQG 442 (1666)
T ss_pred HHHHhCccHHHHHHHHHhCch----hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhccc-ccHHHHHHHHHHHHhhh
Confidence 344556777777666554444 4445555555554444555666666666666666652 33333333333333444
Q ss_pred ChhHHHHHHHHHH-----HCC--CCCC-----HHHH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 001966 278 FVDEAVELKNSMV-----EKG--LVPD-----SYTY------VNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339 (989)
Q Consensus 278 ~~~~A~~~~~~m~-----~~g--~~~~-----~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 339 (989)
+.+--..++.+=+ +.| +.|- ..+| +.++.+|...|.++++.-+.. +.|..||... +
T Consensus 443 RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPdymf---l 516 (1666)
T KOG0985|consen 443 RKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPDYMF---L 516 (1666)
T ss_pred HHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCccHHH---H
Confidence 4443333332211 111 1110 0111 223344444444444433322 3355555332 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCC
Q 001966 340 IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRT-YTSLIQGYCRMRK 418 (989)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~ 418 (989)
+....+ -..+.|.++...|.+.. |...-++.+.+.+........+..++-..++.. .|+... -+.|+..-. .+
T Consensus 517 Lq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL-~~- 590 (1666)
T KOG0985|consen 517 LQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNL-VH- 590 (1666)
T ss_pred HHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHh-cc-
Confidence 333322 44555555555555431 223344455555555555555555555544332 333321 122222111 11
Q ss_pred hhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-----HHHHHccCCHHHHH
Q 001966 419 MVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNL-----VSTYFKKNKLQEAG 493 (989)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~ 493 (989)
|-++-+.+...+.- ...-+..+...|.+.|-+..|++.+.++.... -.++.+.+ +-.|...-.++.+.
T Consensus 591 ---aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwLv~yFg~lsve~s~ 663 (1666)
T KOG0985|consen 591 ---APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWLVNYFGSLSVEDSL 663 (1666)
T ss_pred ---chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHHHHHHHhcCHHHHH
Confidence 11222222222211 22224556666677777777777776654321 11122221 23344455677777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 494 KLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRR-----------GLKPNIHSFRAFILGYCMAGEMQTA 562 (989)
Q Consensus 494 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A 562 (989)
+.++.|...++..|..+...+..-|+..=-.+.-+++|+....- ++.-|+...-..|.+.|+.|++.+.
T Consensus 664 eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEv 743 (1666)
T KOG0985|consen 664 ECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEV 743 (1666)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHH
Confidence 77777777777767666666667777666667777777765532 2334555555667777777777777
Q ss_pred HHHHHH
Q 001966 563 GRFFNE 568 (989)
Q Consensus 563 ~~~~~~ 568 (989)
.++.++
T Consensus 744 ERicre 749 (1666)
T KOG0985|consen 744 ERICRE 749 (1666)
T ss_pred HHHHhc
Confidence 777653
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.5e-12 Score=123.64 Aligned_cols=285 Identities=13% Similarity=0.125 Sum_probs=216.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---ChhhHHHHHHHHHHcCCHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-A---STLSFNTLIEFLCISNKLQEA 771 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A 771 (989)
.++.++|.++|-+|.+.+ +.+..+-.+|.+.|.+.|..|.|+.+.+.+.+... + ...+...|+.-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888753 44556667788888888888888888888876533 2 234566788889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 772 HQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT----ITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
..+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+-.+.. ..|..|+..+....+++.|...+.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988643 224456778888999999999999999998886544432 3567788888888899999999999
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 848 MLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 848 ~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+++ .+|... .-..+++.+...|+++.|++.++.+.+.++..-+++...|..+|.+.|+.++.+..+.++.+..+.
T Consensus 206 Alq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-- 281 (389)
T COG2956 206 ALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-- 281 (389)
T ss_pred HHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--
Confidence 998 777666 556677999999999999999999999887777888999999999999999999999999888754
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhh---hcCCChhhHHHHHhhh
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGE---NSGVDLDESKDLMKQT 988 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~ 988 (989)
+..-..++..-....-.++|...+.+-+.. +|+...++.+.... ..-|.+.+...++++|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 344455555444444445565555554443 78877777766654 2345567777776665
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=1.5e-11 Score=122.47 Aligned_cols=293 Identities=13% Similarity=0.085 Sum_probs=215.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001966 660 KICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALE 739 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 739 (989)
..|++.+|+++..+..+.+-. ....|..-+.+-...|+.+.+-.++.++.+..-.++....-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 357777777777776665433 3344455556666777777777777777765324455555666666777777788888
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 740 LFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD-------TYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
-..++.+.+|..+.......++|.+.|++.+...++.++.+.+.-.++. +|..+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888887777777777777788888888888888888887776655442 455555554444445554556666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001966 813 MQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA 892 (989)
Q Consensus 813 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 892 (989)
...+ .+-++..-.+++.-+..+|+.++|.++.++.++++.+|.-. ..-.+.+-++.+.=++..++..+..+. ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 6553 45556667778888889999999999999999977777622 223456778888888888888887655 77
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..+..|+..|.+.+.+.+|.+.++.+++.. |+...|..++.++.+.|+.++|.+.+++.+..-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999888876 5788899999999999999999999998875544454
No 62
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.57 E-value=1.2e-08 Score=108.54 Aligned_cols=310 Identities=16% Similarity=0.145 Sum_probs=165.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKR 313 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 313 (989)
.|+.|.+.|++-.|.+....=.+ +..|......+..++.+..-|++|-.+|+++.. +...+..|-+-.-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 35566666666665543321111 123444455555555555556666666665542 1112222222223
Q ss_pred hhHHHHHHHHHHHCCCCcCHHhHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001966 314 LGDVRLVLSELIGKGLKLDTVAYY-ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLN 392 (989)
Q Consensus 314 ~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (989)
+.+|.++-+-. ++..+++.. .-.+-+...|+++.|...|-+... .-.-|.+-.....+.+|+.+++
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH
Confidence 33444333221 111122211 112334445666666555544321 0112233344566777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001966 393 EIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPN 472 (989)
Q Consensus 393 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 472 (989)
.+.+.. .-..-|..+.+.|...|+++.|.++|.+. ..++--|.+|.+.|.+++|.++-.+.. |.+..
T Consensus 757 niqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t 823 (1636)
T KOG3616|consen 757 NIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEAT 823 (1636)
T ss_pred Hhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhH
Confidence 776543 22334556667777777888777777543 234556777778888887777766553 22334
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
...|.+-..-+-+.|++.+|.+++-.+.. |+ ..|..|-+.|..+..+.+..+.... .-..|...+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHH
Confidence 45555555666667777777776644332 33 2456677777777777666553221 123455566667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKF 601 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (989)
+...|++..|...|-+..+ |.+-+++|-..+.+++|.++-
T Consensus 892 ~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 7777787777776655432 445556666666666666553
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.3e-10 Score=112.85 Aligned_cols=418 Identities=13% Similarity=0.097 Sum_probs=197.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 001966 517 GLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAE 596 (989)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 596 (989)
++.+.|++++|...+.-+.+. -.++...+..+..++.-.|.+.+|..+-.... .++..-..+...-.+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHH
Confidence 334455555555555554442 23334444444444444555555554433321 112222223333334444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 001966 597 AISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNS-LITSFCKICDVDKAFQLYEEMC 675 (989)
Q Consensus 597 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~ 675 (989)
-..+.+.+.+. ..---+|.......-.+.+|++++...+..+ |+-...|. +.-+|.+..-++-+.++++-.+
T Consensus 140 ~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 44433333221 1222233333333445566666666555432 22222222 2223445555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCC
Q 001966 676 EKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKE-----EKLEQALELFRDMLEKGLA 750 (989)
Q Consensus 676 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~ 750 (989)
.. ++.+....|..+....+.=+-..|.+-..++...+-..-+ .+.-.++. .+-+.|++++-.++..
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~--- 283 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKH--- 283 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhh---
Confidence 43 2223333333333333322222223333333322111000 11111221 2335556555555443
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ-------NMEKAKQLFLEMQQRNLKPATI 823 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~ 823 (989)
-+.+...|+-.|.+++++.+|..+.+.+.. ..| .-|..-.-.+...| .+.-|.+.|+-.-+++..-|..
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP--~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTP--YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHhhcCC--CCh--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 223344455566677777777776665532 122 22222222222222 2444555555444444333322
Q ss_pred -HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 -TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
--.+++..+.-..++++.+.+++.+... ...|+.....++.+.+..|++.+|.++|-++....++.+......|+++|
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 3445555555666777777777776663 22334444556777777888888888877665544442333344667778
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhH
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISL 965 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 965 (989)
.+.++.+-|..++-++-.. ......+-.++..+++.+.+--|-+.|+.+.. +.|+++-|
T Consensus 439 i~nkkP~lAW~~~lk~~t~--~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTP--SERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HhcCCchHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 8888888887777553221 11122334566677777777777777776644 35655444
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=6.7e-09 Score=109.93 Aligned_cols=613 Identities=15% Similarity=0.113 Sum_probs=286.4
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHH
Q 001966 275 RVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFR 354 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (989)
..++|...+++.+.+.++ ..-...|....+-.++..|+.++|...-+.-.+.++ -+.++|..++-.+....++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 345566666666665553 222333444444445555666666655555544332 245555555555555556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-
Q 001966 355 VKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN- 433 (989)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 433 (989)
.+......+.. |...|.-+.-.-.+.|+++-....-....+.. +.....|....-++.-.|++..|..++++..+..
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666555432 45555555444455555555555544444431 2223344455555555555555555555554432
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-HHH
Q 001966 434 LVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVS-CFN 512 (989)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~ 512 (989)
-.|+...|......+.+ .....+.|..++|.+.+..-... + .|.. .-.
T Consensus 175 ~~~s~~~~e~se~~Ly~-----------------------------n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e 223 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQ-----------------------------NQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEE 223 (700)
T ss_pred cCCCHHHHHHHHHHHHH-----------------------------HHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhh
Confidence 12333333222111110 01222334444444433332211 0 0111 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 001966 513 SLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFR-AFILGYCMAGEMQTAG-RFFNEMLNSGLVPNDVIYTSIVDGYCK 590 (989)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (989)
+-...+.+.+++++|..++..++.. .||...|. .+..++.+..+.-++. .+|....+. .|....-.-+--....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhC
Confidence 2233444555555555555555554 23333322 2223332222222222 334333322 1111000000000011
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC----------CCCCHhhH--HH
Q 001966 591 -EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELRE----ALGIFLELLEKG----------LVPDVDTY--NS 653 (989)
Q Consensus 591 -~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~----------~~p~~~~~--~~ 653 (989)
..-.+..-.++..+.+.|+++-.....++ |-.....+- +..+...+...| -+|....| -.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 11222333344555555554322222221 111111110 011111111110 13444333 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 654 LITSFCKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE 732 (989)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 732 (989)
++..+-..|+++.|..+.+..++. .|+. .-|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..+.+
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 566677888888888888887765 4543 344455677888888888888888888765 445444334445556677
Q ss_pred CHHHHHHHHHHHHHcCCC---Ch----hhHHHH--HHHHHHcCCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLA---ST----LSFNTL--IEFLCISNKLQEAHQLLDAMLEE--QV---NPNHDTYTTLINQYC 798 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~---~~----~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~~~~~l~~~~~ 798 (989)
+.++|.++.....+.+.. +. -.|..+ +.+|.+.|++.+|+.-|..+... .+ +.|..|| |.
T Consensus 454 ~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhty------c~ 527 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTY------CM 527 (700)
T ss_pred ccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHH------HH
Confidence 888888888877776641 10 122222 34566777777777666555431 01 1122222 34
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CC-CCHHHHHHHH----HHHHhc-C
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG-IE-PDNFTYYVMI----DAHCKE-G 871 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~-p~~~~~~~l~----~~~~~~-g 871 (989)
+.|-+..=+++++---. +...+.-+.+ ...|+++|-+|.+.. .. +.......+. ....++ .
T Consensus 528 rk~tlrsYv~ll~~~d~--L~~~p~y~~A----------a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk 595 (700)
T KOG1156|consen 528 RKGTLRSYVELLEWEDN--LRSSPYYLRA----------AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRK 595 (700)
T ss_pred hcCcHHHHHHHHHHHHh--hccChHHHHH----------HHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHH
Confidence 45554444443321111 1111111111 234566666666521 00 1111111111 111111 1
Q ss_pred CHHHHHHHHHHHH---------hCCCC--CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 872 NVMEALKLKDLIF---------DKRMP--ISAEAYKAIIKALCKRE-EYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 872 ~~~~A~~~~~~~~---------~~~~~--~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+-.+|.+.-+... +.+.+ ++.. .++..+.+.. -.++|.+++......+.. +..++..-...|.+
T Consensus 596 ~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~-~~~~~iL~~ely~r 671 (700)
T KOG1156|consen 596 AKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKE-KGETYILSFELYYR 671 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhccc-chhhhhhhHHHHHH
Confidence 1112222111111 11222 3333 4555566655 478899999998888877 89999999999999
Q ss_pred cCChhHHHHHHHHHH
Q 001966 940 EGVMDYAAKVLECMA 954 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~ 954 (989)
.|++.-|.+.++++.
T Consensus 672 k~k~~l~~~~~~~~~ 686 (700)
T KOG1156|consen 672 KGKFLLALACLNNAE 686 (700)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998874
No 65
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.55 E-value=4.3e-08 Score=108.60 Aligned_cols=184 Identities=14% Similarity=0.054 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 001966 206 MELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVEL 285 (989)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 285 (989)
...|...|-+.++ ..+.=...|..|+..|+..-+...|.+.|++..+... .+...+......|.+..+++.|..+
T Consensus 474 ~~~al~ali~alr----ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALR----LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHh----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 5566666666665 3333455788888888877788888888888877532 4566777778888888888888887
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 001966 286 KNSMVEKGLV-PDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGN 364 (989)
Q Consensus 286 ~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 364 (989)
.-..-++... .-...|-.+.-.|.+.++...|..-|+...+..+. |...|..++.+|.+.|++..|.++|.+.....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 4444333211 11122333444566778888888888888776543 778888888888888888888888888776532
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001966 365 QIDLVIYNTLLKGFCKSGKMEKAREVLNEIIR 396 (989)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 396 (989)
. +...---..-..|..|++.+|+..+.....
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 222222333446778888888888877653
No 66
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.54 E-value=1e-08 Score=113.30 Aligned_cols=664 Identities=10% Similarity=-0.026 Sum_probs=395.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHH
Q 001966 277 GFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVK 356 (989)
Q Consensus 277 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (989)
.+...|+..|-+.....+. -...|..+...|+...+...|.+.|++..+.+.. |........+.|.+..++++|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4466777777666654322 3567888888898888999999999998876533 6777888899999999999999885
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 001966 357 DELVASGNQ-IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLV 435 (989)
Q Consensus 357 ~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (989)
-...+.... .-...|-...-.|.+.++...|+.-|+...+.. +.|...|..++.+|...|++..|.+.|.+....+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 444443211 011233334445667889999999999988765 5677899999999999999999999999887753
Q ss_pred cC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-------
Q 001966 436 PS-VFTYGVIIDGLCHCGDLRQINAILGEMITRG------LKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRR------- 501 (989)
Q Consensus 436 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 501 (989)
|+ ...---.....|..|.+.+|...+....... ...-..++..+...+.-.|-..+|...+++-++
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33 2222233445678899999998888776531 111122222333333334444455555544332
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCC
Q 001966 502 EGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEM---Q---TAGRFFNEMLNSGLV 575 (989)
Q Consensus 502 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~ 575 (989)
.....+...|-.+.. |..+|-... .. .|+......+..-....+.. + -+.+.+-.-++ ..
T Consensus 707 h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 111112222222221 222222221 11 22222222222212222221 1 11222211111 12
Q ss_pred CCHHhHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 576 PNDVIYTSIVDGYCK----E----GNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPD 647 (989)
Q Consensus 576 ~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 647 (989)
.+...|..++..|.+ . .+...|+..+.+.++. ...+..+|+.|.-. ...|++.-|...|-.-....+. .
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-C 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-c
Confidence 234445455544443 1 2334677888877765 34467788877655 5667777777777665554333 6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--H--CCCCCCHHHHHH
Q 001966 648 VDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMT--K--RGVPLDGSVYNA 723 (989)
Q Consensus 648 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~~~~~~~~~ 723 (989)
..+|..+.-.+....+++.|...|....... +.|...|-.........|+.-++..+|..-- . .|--++..-|..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 7778888878889999999999999888763 2366677666666667888888888887622 1 222344444544
Q ss_pred HHHHHHhcCCHHHHHH----------HHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH-
Q 001966 724 LLSGCCKEEKLEQALE----------LFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYT- 791 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~- 791 (989)
........|+.++-+. .++......|....+|...+......+.+..|.+...+.+.- ...-+...|+
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4445556666555443 444555566677788888888888888888888887765421 0122344444
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH---H-HHHHHH
Q 001966 792 ---TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN---F-TYYVMI 864 (989)
Q Consensus 792 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~-~~~~l~ 864 (989)
.....++..|.++.|...+..... ..+..+...- .+..-.|+++++.+.|++++. +.-+. . ....++
T Consensus 1009 ak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1009 AKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHH
Confidence 344556777888877665543321 1111111111 112446899999999999988 33322 2 233345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc--cCHHhHHHHHHHHHhcCC
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR--LGFASCRTVANDFLREGV 942 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 942 (989)
.+....+..+.|...+-+..... +++......+...+.-..+-.......+++...-.. ..-..-...-.+|...|+
T Consensus 1083 ~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r 1161 (1238)
T KOG1127|consen 1083 VCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGR 1161 (1238)
T ss_pred HHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhh
Confidence 66677888888988888887764 447777777766665555544444444444332100 011112344457788899
Q ss_pred hhHHHHHHHHHHhCCCcc-cchhHHHHHhhh
Q 001966 943 MDYAAKVLECMASFGWVS-NSISLADIVKGE 972 (989)
Q Consensus 943 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 972 (989)
-....+.+++..- ..| |+..|..|..-|
T Consensus 1162 ~~~vk~~~qr~~h--~~P~~~~~WslL~vry 1190 (1238)
T KOG1127|consen 1162 SVAVKKQIQRAVH--SNPGDPALWSLLSVRY 1190 (1238)
T ss_pred hHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 8888889988854 467 466665555433
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.6e-10 Score=110.08 Aligned_cols=271 Identities=11% Similarity=0.034 Sum_probs=140.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 645 VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNA 723 (989)
Q Consensus 645 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 723 (989)
+-|+.....+...+...|+.++|+..|++.... .|+. .......-.+.+.|+++....+...+.... .-....|..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 334555555666666666666666666655543 1211 111222223344555555555555554331 112233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
-+......++++.|+.+-++.++.++.+...+..-+..+...|+.++|.-.|+...... +-+...|..|++.|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 33333445556666666666666555555555555556666666666666666555421 12445666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLL-NGYN-RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLK 880 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 880 (989)
.+|.-+-+...+. ++.+..+...++ ..+. .-.--++|.+++++.+. +.|+.. ....++..+...|.++.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 6665555544432 223333333332 2222 12234556666666655 556554 4444556666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.+.. .||......|++.+...+.+++|.+.|..++..+|+
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 665542 345555666666666666666666666666665554
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.52 E-value=2.9e-08 Score=105.69 Aligned_cols=310 Identities=15% Similarity=0.136 Sum_probs=183.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCC
Q 001966 374 LLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGD 453 (989)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 453 (989)
-|..|.+.|..-.|.+....=.+ +..|......+..++.+..-+++|-.+|+++..- ..-+..|-+-.-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccH
Confidence 45566777776666554322111 1344445555555555555566666666655321 112223333333
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 454 LRQINAILGEMITRGLKPNAIIYT-NLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLV 532 (989)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 532 (989)
+.+|.++-+-. ++..++... .....+...|+++.|+.-|-+.. .....|.+-....++.+|+.+++
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHH
Confidence 34444433322 122222222 12233445566676666654432 12233455566788888998888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 533 EMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPE 612 (989)
Q Consensus 533 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 612 (989)
.++.+.. -...|..+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|++++|.++-.+.. |....
T Consensus 757 niqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEAT 823 (1636)
T ss_pred Hhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhH
Confidence 8877532 33457777888999999999998886542 24556788999999999988876653 33445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 613 VQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDG 692 (989)
Q Consensus 613 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 692 (989)
...|.+-..-+-++|++.+|.+++-.+. .|+ ..|..|-+.|..+..+++..+-.- ..-..|..-+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHH
Confidence 5666666667778888888887764432 233 345667788888777776654421 1123345556667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELF 741 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 741 (989)
|-..|++..|...|-+.. -|.+.+++|...+-|++|..+-
T Consensus 892 ~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 777888888887765443 2555667777777777776553
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=3.8e-12 Score=145.22 Aligned_cols=247 Identities=15% Similarity=0.036 Sum_probs=126.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK---------EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL 768 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 768 (989)
++++|..+|++..+.+ |.+...|..+..++.. .+++++|...++++++.+|.+..++..++..+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456666666666553 3344455554444331 12355666666666666665666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT-ITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
++|...++++++.. +.+...+..++..+...|++++|+..+++..+ ..|+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 66666666666542 11344555555666666666666666666655 23332 2222333344445666666666666
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 848 MLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 848 ~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+++. ..|+.. .+..++.++...|++++|...++++....+. +...+..++..|...|+ +|...++++.+..-. .
T Consensus 432 ~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~-~ 506 (553)
T PRK12370 432 LRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE--RALPTIREFLESEQR-I 506 (553)
T ss_pred HHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH-h
Confidence 5541 123333 3444555555666666666666555443222 34444455555555553 555555554433211 1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+.-...+..+|.-.|+.+.+..+ +++.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhh
Confidence 11122245555555555555555 4443
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=9.7e-13 Score=126.09 Aligned_cols=233 Identities=11% Similarity=0.000 Sum_probs=156.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 722 NALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ 801 (989)
Q Consensus 722 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 801 (989)
+.+..+|.+.|.+.+|.+.++..++..+ .+.++..|..+|.+..+++.|+.++.+.++. ++.++.....+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 4566777777777777777777766543 4445666777777777777777777777664 2223333344556666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 802 NMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKD 881 (989)
Q Consensus 802 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 881 (989)
+.++|.++|+...+.. +.+......++..|.-.++.+-|+.+|++++..|+. +...|.+++-+|.-.+++|-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777777777632 334556666667777777777777777777775543 34456666666667777777777777
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 001966 882 LIFDKR--MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWV 959 (989)
Q Consensus 882 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 959 (989)
+++..- +..-..+|+.++.+....||+.-|.+.|+-++..+++ +..++++|+..-.+.|+.++|+.+++.+.+. .
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV--M 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--C
Confidence 776542 2234566777777777777777777777777777766 7777777777777777777777777776543 5
Q ss_pred cc
Q 001966 960 SN 961 (989)
Q Consensus 960 p~ 961 (989)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 65
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.8e-11 Score=117.76 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=196.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN---HDTYTTLINQYCKVQNMEKA 806 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 806 (989)
-+.+.++|+++|-+|.+..+....+-.+|+..|.+.|..|+|+.+.+.+.+..--+. ......|..-|...|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357789999999999998888888899999999999999999999999987421111 13445677788999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 807 KQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 807 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
.++|..+.+.+ .--..+...|+..|....+|++|++..+++.+.+-.+... .|-.|+..+....+++.|...+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998743 3345678899999999999999999999999844333222 344577777788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 883 IFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 883 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
+.+.+++ ...+-..+++.....|+++.|++.++.+.+.+|+.-+.+...|..+|...|+.++....+.++.+. .++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 9998766 667777899999999999999999999999998877889999999999999999999999998765 4554
Q ss_pred hhHHHHHhhh
Q 001966 963 ISLADIVKGE 972 (989)
Q Consensus 963 ~~~~~l~~~~ 972 (989)
+....+.+..
T Consensus 283 ~~~l~l~~li 292 (389)
T COG2956 283 DAELMLADLI 292 (389)
T ss_pred cHHHHHHHHH
Confidence 4444444443
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=2e-09 Score=113.84 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=131.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001966 476 YTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCM 555 (989)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 555 (989)
|..++..| ..+++...+++.+.++++- +.-..+.....-.++..|+.++|.......+...+. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 44444444 5566777777777666531 112333333333455667777777777666664433 45566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 556 AGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGI 635 (989)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 635 (989)
..++++|++.|..++..+ +.|...+.-+.-.-.+.++++.....-....+. .+.....|..++.+..-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777665 556666666666666667776666666665553 222445666666667777777777777
Q ss_pred HHHHHHCC-CCCCHhhHHHHHHH------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001966 636 FLELLEKG-LVPDVDTYNSLITS------FCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDE 708 (989)
Q Consensus 636 ~~~~~~~~-~~p~~~~~~~li~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 708 (989)
+++..+.. ..|+...+.-.... ..+.|..+.|.+.+..-... +......-.+-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 77766543 23444444433322 23345555555554443322 111222223344556666666666666666
Q ss_pred HHHC
Q 001966 709 MTKR 712 (989)
Q Consensus 709 ~~~~ 712 (989)
++..
T Consensus 245 Ll~r 248 (700)
T KOG1156|consen 245 LLER 248 (700)
T ss_pred HHhh
Confidence 6665
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.4e-09 Score=105.55 Aligned_cols=293 Identities=12% Similarity=0.029 Sum_probs=209.4
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEK-GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQA 737 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 737 (989)
+-.++...|...+-.+... -++.|+.....+.+.+...|+.++|...|++....+ +-+........-.+.+.|+.++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 4445555555555444333 355677788888888888999999999998887653 22223333334445677888888
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001966 738 LELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN 817 (989)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 817 (989)
..+...+..........|..-+..+....+++.|+.+-++.++... .+...+..-+..+...|+.++|.-.|+..+.
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~-- 362 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM-- 362 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh--
Confidence 8888887776543444455555666777888889888888886532 2556677777788888999999888888877
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCHH
Q 001966 818 LKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI-DAHC-KEGNVMEALKLKDLIFDKRMPISAE 893 (989)
Q Consensus 818 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~ 893 (989)
+.| +...|..|+.+|...|++.||....+.... .-|.+. +...++ ..+. ....-++|.+++++.+...|. -..
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~ 439 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTP 439 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHH
Confidence 444 566889999999999999999888888877 455444 444443 3332 334468888899888876644 456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
+-..++..+...|++++++.++++.+... +|...+..||+++...+.+++|...|..+++. .|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 67778888888899999999999888765 46677788999999999999998888888653 6753
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.8e-12 Score=122.11 Aligned_cols=236 Identities=13% Similarity=0.045 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 001966 684 LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLC 763 (989)
Q Consensus 684 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 763 (989)
.--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-..|.+..+...|+.++.+-++..|.+......+++.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 33356777888888888888888877765 4566777777888888888888888888888877777777777778888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
..++.++|.++|+...+.. +.++....++...|.-.++++-|+.+|+++.+.| --++..|+.++-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHH
Confidence 8888888888888887653 2255555666677777888888888888888877 4566778888888888888888888
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 844 VFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 844 ~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
-|++++..--.|+.. .|+++.......|++.-|.+.|+-++..+.. +.++++.|+-.-.+.|+.++|..+++.+...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888744456544 7888888888889999999999988887766 8889999998889999999999999988777
Q ss_pred CCc
Q 001966 922 GFR 924 (989)
Q Consensus 922 ~~~ 924 (989)
.|.
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 655
No 75
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=8.1e-10 Score=110.39 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 592 GNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLY 671 (989)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 671 (989)
|++..|.++..+..+.+-. ....|..-+.+--+.|+.+.+-.++.++.+....++...+-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4455555444444333221 122233333344444444444444444444322333333344444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS 751 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 751 (989)
+++.+.+.. +.........+|.+.|++.+...++..+.+.+.-.++..-.- .
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------e 228 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------E 228 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------H
Confidence 444444222 333344444444555555555555555444443222210000 0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
..++..+++-....+..+.-...++....+ ...++..-.+++.-+.+.|+.++|.++..+..+++..|+.. ....
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 012233333222222222222333333321 22234444455555556666666666665555554444411 1122
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+.+-++...-++..++-++ ..|+. ..+..|+..|.+.+.|.+|.++++.+++. .|+...|..+++++.+.|+.++
T Consensus 304 ~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHH
Confidence 3344555555555555555 33332 25555666666666666666666655553 3456666666666666666666
Q ss_pred HHHHHHHHHHC
Q 001966 911 ALRLLNEMGES 921 (989)
Q Consensus 911 A~~~~~~~~~~ 921 (989)
|.++.++.+-.
T Consensus 380 A~~~r~e~L~~ 390 (400)
T COG3071 380 AEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666665533
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.2e-11 Score=124.39 Aligned_cols=199 Identities=16% Similarity=0.055 Sum_probs=113.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
...+..++..+...|++++|...+++.++.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445556666666666666666666665432 1234555556666666666666666666665532 2334455556666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+...|++++|...++++++....|. ...+..++.++...|++++|.+.++++++..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655221222 224445555666666666666666666655433 45555566666666666666
Q ss_pred HHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 911 ALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 911 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
|...++++++..+. ++..+..++.++...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666555333 45555556666666666666666555543
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=5e-11 Score=136.13 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS---------NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
++++|+.+|+++++..|.+..++..++.++... +++++|...++++++... .+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCH
Confidence 345666666666666665555555555444321 235666666666665421 1445555566666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
++|+..|++..+.+ +.+...+..++..+...|++++|+..++++++ +.|+.. .+..++..+...|++++|+..+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 66666666666632 22344556666666666666666666666666 556543 222333445556666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 883 IFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 883 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+++..++.++..+..++.++...|+.++|...++++....+. +......++..|...|+ +|...++++.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 655432224455566666666666666666666665555444 44455556666666553 5555555544
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=6e-11 Score=121.11 Aligned_cols=195 Identities=16% Similarity=0.137 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 001966 787 HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMID 865 (989)
Q Consensus 787 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 865 (989)
...+..++..+...|++++|++.+++..+.. +.+...+..++..+...|++++|...+++.++ ..|+. ..+..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence 3445555556666666666666666655532 22344555566666666666666666666665 33432 24555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 866 AHCKEGNVMEALKLKDLIFDKRM-PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 866 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
.+...|++++|.+.++++++... ......+..++.++...|++++|...++++++..|. ++..+..++.++...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 66666666666666666654321 113344555566666666666666666666665554 4555666666666666666
Q ss_pred HHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 945 YAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+|...++++.+. .| +...+..++..+...|+.++|..+.++
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666665543 23 344445555555566666666555443
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.8e-10 Score=114.61 Aligned_cols=423 Identities=16% Similarity=0.098 Sum_probs=255.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCH
Q 001966 516 IGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN-DVIYTSIVDGYCKEGNI 594 (989)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 594 (989)
.+.+..|+++.|+..|.+.+..... +.+-|..-..+|...|++++|.+--.+..+. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4455677777777777777765433 6666777777777777777777655555544 233 34566666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHH
Q 001966 595 AEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICD-VDKAFQLYEE 673 (989)
Q Consensus 595 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~ 673 (989)
++|+.-|.+-++.. +.+...++.+..++ ..+.+. +. ...++..|..+..--....- .+.+....-+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 77777777766642 23455555555554 111110 10 01122222222211111000 0111111111
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHhcCChhHH-HHHHHHHH-H----------CCCCC--C----------HHHHHHHHH
Q 001966 674 MCEKGVEPNTLTY---NVLIDGFCKAGDLTEP-FQLFDEMT-K----------RGVPL--D----------GSVYNALLS 726 (989)
Q Consensus 674 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~~~~~~~-~----------~~~~~--~----------~~~~~~l~~ 726 (989)
....+ +-+...| ..++.+.......+.- ...-..+. . .+.++ | ..-...+++
T Consensus 154 ~~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 154 IIQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HhhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 11111 0011111 0011111100000000 00000000 0 00000 0 112445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHh
Q 001966 727 GCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT-------YTTLINQYCK 799 (989)
Q Consensus 727 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~ 799 (989)
+..+..+++.|++.+...++.. .+..-++....+|...|.+.+.....+..++.|.. ...- +..+..+|.+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 7777788899999999998887 66666777788888889888888888777765433 1122 2234456777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALK 878 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 878 (989)
.++++.|+..|++.......|+. ..+....+++........- +.|+.. -...-++.+.+.|++.+|++
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 88899999999887764434433 2234456666666666655 667654 23334788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 879 LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
.|.+++..+|. |...|...+-+|.+.|++..|++-.++.++.+|+ ....|..-|.++....+|+.|.+.|++.++.
T Consensus 380 ~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~-- 455 (539)
T KOG0548|consen 380 HYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL-- 455 (539)
T ss_pred HHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 99999999876 9999999999999999999999999999999887 7889999999999999999999999999764
Q ss_pred cccch-hHHHHHhhh
Q 001966 959 VSNSI-SLADIVKGE 972 (989)
Q Consensus 959 ~p~~~-~~~~l~~~~ 972 (989)
.|+.. +...+.+..
T Consensus 456 dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCV 470 (539)
T ss_pred CchhHHHHHHHHHHH
Confidence 67543 333333333
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=1.1e-10 Score=125.79 Aligned_cols=235 Identities=15% Similarity=0.113 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEE-----QV-NPNHD-TYTTLINQYCKVQNMEKAKQLFLEMQQR-----N-LKP 820 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p 820 (989)
+...++..|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|+.+|+++..- | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334555555555555555555554421 10 11221 2233555666666666666666666441 1 111
Q ss_pred C-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 001966 821 A-TITYRSLLNGYNRMGNRSEVFVVFEEMLG-----KGIEP-DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK---RMP 889 (989)
Q Consensus 821 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 889 (989)
. ..+++.|+..|.+.|++++|..+++++++ .|..+ +.. .+..++..++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 23566666666667776666666666554 12222 222 3444556666677777777776666542 111
Q ss_pred C-C---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----Ccc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 001966 890 I-S---AEAYKAIIKALCKREEYSEALRLLNEMGESG----FRL---GFASCRTVANDFLREGVMDYAAKVLECMASF-- 956 (989)
Q Consensus 890 ~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 956 (989)
+ + +.++..|+..|.+.|++++|.++++++++.. ..- ....++.++..|.+.+++++|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 1 3456677777777777777777777776543 110 1334566777777777777777666654321
Q ss_pred CCcc---c-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 957 GWVS---N-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 957 ~~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
...| + ...+-+|+..|..+|++++|+++..++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1122 3 245567777777777777777766543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=1.1e-10 Score=107.55 Aligned_cols=205 Identities=14% Similarity=-0.005 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN 833 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 833 (989)
+...|+-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++..... +-+..+.|..+.-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556666777777777777777777653 1244666777777777777777777777776632 223456677777777
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
..|++++|...|++++.....|... +|.+++.+..+.|+++.|.+.+++.++.++. .+.....+++...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 7777777777777777643334333 6677777777777777777777777776655 5566666777777777777777
Q ss_pred HHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 913 RLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
.+++.....++ +....+...+.+-...|+-+.|-++=..+.+. -|.+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 77777666655 46666666666667777766666655555432 455433
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=6e-07 Score=97.34 Aligned_cols=268 Identities=16% Similarity=0.158 Sum_probs=148.4
Q ss_pred ChhhHHHHHH--HHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHH
Q 001966 262 NVATYNVVIG--GLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYAL 339 (989)
Q Consensus 262 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 339 (989)
|.+|-..+++ -|...|++|.|.+..+..+ +...|..+...|.+..+++-|.-.+..|....
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------- 787 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------- 787 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh-----------
Confidence 4455555553 3455677777776666654 44566667777777777666666665554310
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 001966 340 IDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKM 419 (989)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 419 (989)
. .+.+++..+.|- .+-....-.-.+.|.+++|..+|++.++ |..|=..|-..|.+
T Consensus 788 -----------g-aRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w 842 (1416)
T KOG3617|consen 788 -----------G-ARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMW 842 (1416)
T ss_pred -----------h-HHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccH
Confidence 0 112223333211 1111111123356788888888887764 23344445567888
Q ss_pred hHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 420 VSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERM 499 (989)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (989)
++|.++-+.-.+..+ ..||..-..-+-..++++.|++.|++.-.. --.++. ++. .++.....+.+++
T Consensus 843 ~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~r-mL~-----e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 843 SEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFR-MLK-----EYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHH-HHH-----hChHHHHHHHHhc
Confidence 888877655333222 345555556666677888888877764221 001111 111 1122222222332
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 500 RREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDV 579 (989)
Q Consensus 500 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (989)
. |...|.-...-+-..|+.+.|+.+|....+ |-+++...|-+|+.++|-++-++ .-|..
T Consensus 910 ~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~A 968 (1416)
T KOG3617|consen 910 R------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKA 968 (1416)
T ss_pred c------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHH
Confidence 2 334444444445567788888877766543 45566667777888777776554 23556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 580 IYTSIVDGYCKEGNIAEAISKFRCML 605 (989)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (989)
....|...|-..|++.+|+..|-+..
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66677777777788888877776554
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.5e-07 Score=100.24 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=98.9
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHH
Q 001966 275 RVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFR 354 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (989)
..|-.++|..+|.+-+.. ..+=..|-..|.+++|.++-+.--+. .=..||.....-+-..++++.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHH
Confidence 456677777777665532 22333344556777776665432221 123455555555556666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 355 VKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNL 434 (989)
Q Consensus 355 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (989)
.|++.-.. --.++. |+. .+...-....+++ .|...|.--..-+-..|+++.|+.+|....+
T Consensus 880 yyEK~~~h----afev~r-mL~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 880 YYEKAGVH----AFEVFR-MLK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHhcCCh----HHHHHH-HHH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 66643110 001111 111 0111111112222 2334444444445567777777777776543
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 001966 435 VPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMR 500 (989)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 500 (989)
|-+++...|-.|+.++|-++-++- -|....-.+.+.|-..|++.+|...|.+..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455666777778888777776653 255556667777777788888877777654
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-09 Score=110.17 Aligned_cols=250 Identities=18% Similarity=0.122 Sum_probs=172.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhH-------HHH
Q 001966 686 YNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSF-------NTL 758 (989)
Q Consensus 686 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~l 758 (989)
...+.+...+..+++.|++.+....... .+..-++....+|...|.+.+.+......++.|.....-+ ..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3456666777788888888888887764 4555566677788888888888887777777665322222 224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGN 837 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 837 (989)
+.+|.+.++++.|+..|.+.+.....|+. ..+....+++....+...- +.|+.. -...-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 44667778889999999888765444332 2233445556555555444 344432 23334677788888
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
+..|+..|.+++. ..|++. .|.+.+-+|.+.|.+..|++-.+..++.+++ ....|..-+.++....+++.|.+.|+
T Consensus 374 y~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 374 YPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988888888 567665 7888888888888888888888888888655 67778877888888888888888888
Q ss_pred HHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 917 EMGESGFRLGFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 917 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
++++.+|. +..+...+..++.....-+...++.++
T Consensus 451 eale~dp~-~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 451 EALELDPS-NAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHhcCch-hHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 88888866 666666666666653333344444444
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=3.8e-10 Score=117.64 Aligned_cols=214 Identities=14% Similarity=0.014 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 732 EKLEQALELFRDMLEKGL----ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAK 807 (989)
Q Consensus 732 g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 807 (989)
+..+.++.-+.+++...+ .....+..++..+...|+.++|...|++.++... .+...|+.++..+...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 344556666666665433 1234466666677777777777777777776432 24567777777777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 808 QLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 808 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
..|++..+ +.|+ ..+|..++.++...|++++|...+++.++ ..|++.........+...+++++|+..+++....
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 77777776 3444 55677777777777777777777777777 6665542222222334456777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-------HCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMG-------ESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
. .++. |. .+......|+..++ ..++.+. +..++ ...+|..+|.++.+.|++++|+..|+++++.
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 1121 21 12233344544333 2333332 11222 3457788888888888888888888877754
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1e-09 Score=118.50 Aligned_cols=237 Identities=18% Similarity=0.133 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEK-------GLASTL-SFNTLIEFLCISNKLQEAHQLLDAMLEE-----QV- 783 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~- 783 (989)
..+...+...|...|+++.|+.+++..++. ..+... ....++..|...+++++|..+|++++.- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777788888888888888877765 222222 3344778888889999999998888731 21
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhC---C
Q 001966 784 NPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQR-----NL-KPAT-ITYRSLLNGYNRMGNRSEVFVVFEEMLGK---G 852 (989)
Q Consensus 784 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g 852 (989)
.|. ..+++.|...|++.|++++|..++++..+- +. .|.. ..++.++..+...+++++|..++++.++. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 121 246777778889999998888887776441 22 2222 24677788889999999999999987761 1
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 853 IEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKR----MP---ISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 853 ~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..+++ .++..|+..|...|++++|.+++++++... -. -....++.++..|.+.+++++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22333 278889999999999999999999998641 11 11345778888899999999999998886543
Q ss_pred ----CCc-cC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 922 ----GFR-LG-FASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 922 ----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+|. |+ ..+|..|+..|...|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 333 12 4468899999999999999999998876
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=8e-10 Score=101.96 Aligned_cols=202 Identities=15% Similarity=0.049 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 798 (989)
.+...+.-.|.+.|+...|..-++++++..|.+..++..++..|.+.|..+.|.+.|++.+..... +-.+.|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 355566777888888888888888888888877888888888888888888888888888765322 4466777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 876 (989)
.+|++++|...|++....-.-| -..+|..++.+..+.|+.+.|.+.|++.++ +.|+.. +...+...+.+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 8888888888888877632222 245777888888888888888888888888 677655 677777888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..+++.....+. ++.+.+...++.-...|+-+.|.++=..+....|.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 888887776654 57777777777777788888777777766666544
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=6.6e-08 Score=101.48 Aligned_cols=442 Identities=13% Similarity=0.104 Sum_probs=210.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHH--Hhc
Q 001966 481 STYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRA--FILGY--CMA 556 (989)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~--~~~ 556 (989)
+.+...|++++|.....+++..+. -+...+.+-+.++.+.+++++|+.+.+.-.. ..+++. +=.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHc
Confidence 344455556666666665555431 2333444444455556666666543332111 011111 12222 355
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 557 GEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILP-EVQTYSVLINGLSKKLELREALGI 635 (989)
Q Consensus 557 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 635 (989)
+..++|...++-.. ..+..+...-...+.+.|++++|+++|+.+.+.+... +...-..++.. +....+.
T Consensus 93 nk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-- 162 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-- 162 (652)
T ss_pred ccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH--
Confidence 66666666555111 1122233334455556666666666666665543211 11111111110 0000000
Q ss_pred HHHHHHCCCCCCHhhHHHHHH---HHHhcCCHHHHHHHHHHHHHC-------CCCC--CH-----HHHHHHHHHHHhcCC
Q 001966 636 FLELLEKGLVPDVDTYNSLIT---SFCKICDVDKAFQLYEEMCEK-------GVEP--NT-----LTYNVLIDGFCKAGD 698 (989)
Q Consensus 636 ~~~~~~~~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~-------~~~~--~~-----~~~~~li~~~~~~g~ 698 (989)
.+......| ..+|..+-+ .+...|++.+|+++++...+. +-.. +. .+-..|...+...|+
T Consensus 163 --~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 163 --LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred --HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 111111122 222332222 344566666666666665211 0000 00 122345556677788
Q ss_pred hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH-H-HHHHHHHHHHHcCCC----------ChhhHHHHHHHH
Q 001966 699 LTEPFQLFDEMTKRGVPLDGS----VYNALLSGCCKEEKL-E-QALELFRDMLEKGLA----------STLSFNTLIEFL 762 (989)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~-~-~A~~~~~~~~~~~~~----------~~~~~~~l~~~~ 762 (989)
.++|..++...++.+ ++|.. .-|.++..- ...++ + .++..++........ -...+...+-..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~-~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALS-KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhc-cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887765 34432 222222221 11111 1 122222222111100 001111111112
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY-CKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSE 840 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 840 (989)
.-.+..+.+.++...... ..|....-+.+..++ ++...+.+|.+++....+.. +.+ ..+....+......|+++.
T Consensus 318 l~tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHhhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHH
Confidence 223444455554444332 233333222222222 23335777788877776632 222 4455666677788899999
Q ss_pred HHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHccC
Q 001966 841 VFVVFE--------EMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK--RMPISAE----AYKAIIKALCKRE 906 (989)
Q Consensus 841 A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g 906 (989)
|.+++. .+.+.+..|. +...+...+.+.++-+-|..++.+++.- .-.+... .+..++..-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999888 5555333443 4444556677777766677776666532 0111222 2333444455679
Q ss_pred CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 907 EYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+-++|..+++++++.+|. |..+...+..+|.... .+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPN-DTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 999999999999988877 8888888888887763 466655443
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=1.3e-09 Score=113.65 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=129.4
Q ss_pred ChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRG-VPL--DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
..+.++.-+.+++... ..| ....|..+...+...|++++|...|++.++..|.+..++..++..+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555431 111 1344666666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIE 854 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 854 (989)
|++.++.... +..+|..++..+...|++++|++.|++..+. .|+..........+...++.++|...+++.... ..
T Consensus 121 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~ 196 (296)
T PRK11189 121 FDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LD 196 (296)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CC
Confidence 7777764211 3456666777777777777777777777763 344321111112233456777777777665542 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 855 PDNFTYYVMIDAHCKEGNVMEALKLKDLIFD---KRM---PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 855 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|+...+ .......|+..++ +.++.+.+ ..+ +...++|..++..+.+.|++++|+..|+++++.+|.
T Consensus 197 ~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 197 KEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 322221 2222334544333 23333321 111 113467888888888888888888888888877754
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3e-07 Score=96.68 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 628 ELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYE--------EMCEKGVEPNTLTYNVLIDGFCKAGDL 699 (989)
Q Consensus 628 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~ 699 (989)
...++.+++...-+....-...+.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 355555555555444333223444445555566666666666666 3333333333 233444555555555
Q ss_pred hHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 700 TEPFQLFDEMTKR--GVPLD----GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 700 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
+.|..++.+.... ...+. ..++..++..-.+.|+-++|..+++++.+.++++..+...++.+|++. +++.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 5555555544331 00011 112222223333445555555555555555555555555555555443 2344433
Q ss_pred H
Q 001966 774 L 774 (989)
Q Consensus 774 ~ 774 (989)
+
T Consensus 513 l 513 (652)
T KOG2376|consen 513 L 513 (652)
T ss_pred H
Confidence 3
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=4.9e-09 Score=114.92 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=165.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cC
Q 001966 658 FCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK-----EE 732 (989)
Q Consensus 658 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g 732 (989)
+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |.+..-|..+..+... ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34556666666655543332 22223334445555566666666666666666553 3333333333333311 12
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL-QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
+.+...++|+++....|..... ..+.-.+.....+ ..+..++..++.+|+++ ++..+-..|....+.+-..+++.
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 3455566666665554411111 1111111111112 23444555555665443 34444444443333333334444
Q ss_pred HHHHC--------------CCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 001966 812 EMQQR--------------NLKPATI--TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVM 874 (989)
Q Consensus 812 ~~~~~--------------~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~ 874 (989)
..... .-+|... ++.-++..|...|++++|+++++++++ ..|... .|..-+..+-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 43221 1134432 445667778888888888888888888 677654 6777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--C----HHhH--HHHHHHHHhcCChhHH
Q 001966 875 EALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--G----FASC--RTVANDFLREGVMDYA 946 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~--~~l~~~~~~~g~~~~A 946 (989)
+|.+.++.+...+.. |..+-+..+..+.+.|+.++|.+++......+.+| + -.+| .-.|.+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888766 77777777788888888888888888776554222 1 1133 4567788888888888
Q ss_pred HHHHHHHHh
Q 001966 947 AKVLECMAS 955 (989)
Q Consensus 947 ~~~~~~~~~ 955 (989)
++-+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 887776654
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=3.5e-09 Score=116.06 Aligned_cols=291 Identities=16% Similarity=0.175 Sum_probs=213.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc----
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCIS---- 765 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 765 (989)
...+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.+|.+..-+..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 45567899999999999886654 4444555667788899999999999999999999998888888777776333
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 766 -NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNME-KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 766 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
...+.-.++++++.+.- |.......+.-.+.....+. .+..++..+..+|+|+- +..+-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHH
Confidence 25677888898887653 43333333322222222333 45566777778886543 3344444444444444455
Q ss_pred HHHHHHhC----CC----------CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 844 VFEEMLGK----GI----------EPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 844 ~~~~~~~~----g~----------~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
++...... +- .|... ++..++..|...|++++|++++++++++.|. .++.|..-++++-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 55554431 11 12222 4466778888999999999999999998766 78999999999999999
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc------hhH--HHHHhhhhcCCChh
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS------ISL--ADIVKGENSGVDLD 979 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~--~~l~~~~~~~g~~~ 979 (989)
+++|...++.+.+.+.. |-.+-...+..+.+.|+.++|.++.....+.+..|-. ..| ...++++.++|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999877 8888888999999999999999999988766544421 234 55677789999999
Q ss_pred hHHHHHhhh
Q 001966 980 ESKDLMKQT 988 (989)
Q Consensus 980 ~a~~~~~~~ 988 (989)
.|.+.+..+
T Consensus 323 ~ALk~~~~v 331 (517)
T PF12569_consen 323 LALKRFHAV 331 (517)
T ss_pred HHHHHHHHH
Confidence 999887654
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=8.3e-12 Score=89.81 Aligned_cols=50 Identities=46% Similarity=0.853 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 261 PNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSA 310 (989)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 310 (989)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 55666666666666666666666666666666666666666666666553
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=1.5e-07 Score=91.75 Aligned_cols=189 Identities=15% Similarity=0.210 Sum_probs=114.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.-.|+...|+.....+++. .+-|...+..-..+|...|++..|+.-++..-+....+......+...+...|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 3456666666666666664 244555555666666677777777766666666655666666667777777777777776
Q ss_pred HHHHHHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HH---HHHHHHHHHHhc
Q 001966 774 LLDAMLEEQVNPNHDT----YTTL---------INQYCKVQNMEKAKQLFLEMQQRNLKPA--TI---TYRSLLNGYNRM 835 (989)
Q Consensus 774 ~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~---~~~~l~~~~~~~ 835 (989)
..++-++. .||... |..+ +....+.++|.++++..+...+. .|. .. .+..+-.++...
T Consensus 245 ~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 245 EIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeeccccc
Confidence 66666653 444421 1111 11223455666666666666653 333 12 233344556666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
|++.+|+..-.++++ +.|++. ++..-+.+|.-...+++|+.-|+.+.+.+..
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 777777777777777 667644 6666667777777777777777777766543
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.3e-11 Score=87.51 Aligned_cols=49 Identities=49% Similarity=0.953 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001966 366 IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYC 414 (989)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (989)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=5e-08 Score=94.97 Aligned_cols=316 Identities=15% Similarity=0.136 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 001966 612 EVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYN-VLI 690 (989)
Q Consensus 612 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li 690 (989)
++.-.--+...+...|++..|+.-|...++-++. +-.++-.-...|...|+...|+.-+...++. +||-..-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3444445555666666666666666666554211 1222222233455566666666666666554 44433211 122
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
..+.++|.++.|..-|+..++.. |+..+- ..++.+.--.++ .......+..+...|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e---------------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQE---------------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHH---------------HHHHHHHHHHHhcCCchhh
Confidence 34555666666666666665542 111000 000000000000 0011112223344566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
|+..+..+++.. +-|...+..-..+|...|++..|+.=++...+.. ..+..+...+...+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 666666666531 2255556666666666666666666555555432 33444555555566666666666666666666
Q ss_pred CCCCCCHHHHH----HH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHH
Q 001966 851 KGIEPDNFTYY----VM---------IDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKAIIKALCKREEYSEALRL 914 (989)
Q Consensus 851 ~g~~p~~~~~~----~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 914 (989)
++||..... .+ +....+.++|.++++..++..+..+... ...+..+-.++...|++.+|++.
T Consensus 252 --ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 --LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred --cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 666654211 11 1333455667777777777766554411 12233455556666777777777
Q ss_pred HHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 915 LNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..++++..|+ |..++...+.+|.-...|+.|+.-|+++.+
T Consensus 330 C~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 330 CKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7777777666 677777777777777777777777777754
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.7e-09 Score=111.69 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=158.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEA 771 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 771 (989)
-+.+.|++.+|.-.|+...+.+ |-+...|.-|.......++-..|+..++++++..|.+..+...|+-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3567888999999999888875 667888999988888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 001966 772 HQLLDAMLEEQVNPNHDTYTTLI---------NQYCKVQNMEKAKQLFLEMQ-QRNLKPATITYRSLLNGYNRMGNRSEV 841 (989)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A 841 (989)
+..+++.+...++ . .|.... ..+.....+.+..++|-++. ..+.++|+.++..|+-.|...|++++|
T Consensus 373 l~~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999998764211 0 000000 00011111223333343333 334346667777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
+..|+.++. .+|++. .|+.|+-.+....+.++|+..|.++++..|. -..+++.|+-+|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 777777777 777555 6777777777777777777777777776543 345666777777777777777777777765
Q ss_pred CC
Q 001966 921 SG 922 (989)
Q Consensus 921 ~~ 922 (989)
..
T Consensus 527 mq 528 (579)
T KOG1125|consen 527 MQ 528 (579)
T ss_pred hh
Confidence 44
No 98
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=1.8e-08 Score=104.36 Aligned_cols=219 Identities=10% Similarity=0.011 Sum_probs=159.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HH
Q 001966 729 CKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN-KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM--EK 805 (989)
Q Consensus 729 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 805 (989)
...+..++|+.++.++++.+|.+..+|.....++...| .+++++..++++++...+ +..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 34466778888888888888877777777777777777 578888888888865332 445566555555556653 67
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc---CC----HHHHH
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE---GN----VMEAL 877 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~---g~----~~~A~ 877 (989)
++.+++++.+.. +-|..+|.....++...|+++++++.++++++ .+|.+. +|+....++.+. |. .++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 788888888743 44567888888888888888888888888888 667544 677766555544 22 35678
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC------------
Q 001966 878 KLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG------------ 941 (989)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 941 (989)
++.++++...|. |..+|..+...+.. .++..+|.+.+.++.+.+++ ++.++..|+++|....
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 888888887766 78888888888877 34567788888888877766 7888888888887643
Q ss_pred ------ChhHHHHHHHHH
Q 001966 942 ------VMDYAAKVLECM 953 (989)
Q Consensus 942 ------~~~~A~~~~~~~ 953 (989)
..++|.++++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 235677778777
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=4.2e-09 Score=110.27 Aligned_cols=249 Identities=12% Similarity=0.017 Sum_probs=196.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
.-+.+.|+..+|.-.|+..+..+|.+..+|..|+......++-..|+..+++.++... .+......|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 3456789999999999999999999999999999999999999999999999998632 267888899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-----HH---HHHHhcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 806 AKQLFLEMQQRNLKPATITYRS-----LL---NGYNRMGNRSEVFVVFEEMLG-KGIEPDNFTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~-----l~---~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~A 876 (989)
|+++++..+... |....... .. ........+....++|-++.. .+..+|......|+-.|.-.|+++.|
T Consensus 372 Al~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999987632 21110000 00 011122234445555655554 55456777888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+..|+.++...|. |...|+.|+..+....+.++|+..|.++++..|. =..+++.||..|.+.|.|++|.+.|-.++..
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999998876 8999999999999999999999999999999877 5788999999999999999999999887653
Q ss_pred CC---cc------cchhHHHHHhhhhcCCChh
Q 001966 957 GW---VS------NSISLADIVKGENSGVDLD 979 (989)
Q Consensus 957 ~~---~p------~~~~~~~l~~~~~~~g~~~ 979 (989)
.- .+ +..+|-.|-..+...+..+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 22 12 2357877777776666666
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=1.3e-07 Score=103.28 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=73.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 001966 728 CCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQN 802 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 802 (989)
+...|++++|.+.+++.++..|.+..++.. ...+.. .+..+.+.+.++.. ....|+ ......+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCC
Confidence 344555666666666655555544433332 212222 22333333333321 111222 2233344445556666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHH--HHHHHHHHHHhcCCHHHHH
Q 001966 803 MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DNF--TYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 803 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~--~~~~l~~~~~~~g~~~~A~ 877 (989)
+++|.+.+++..+.. +.+...+..++.++...|++++|..++++.++ ..| +.. .|..++..+...|++++|+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~--~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD--TWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh--ccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666532 22344555556666666666666666666655 222 211 2334555566666666666
Q ss_pred HHHHHHHh
Q 001966 878 KLKDLIFD 885 (989)
Q Consensus 878 ~~~~~~~~ 885 (989)
..++++..
T Consensus 207 ~~~~~~~~ 214 (355)
T cd05804 207 AIYDTHIA 214 (355)
T ss_pred HHHHHHhc
Confidence 66666543
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.3e-07 Score=88.72 Aligned_cols=195 Identities=16% Similarity=0.162 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH
Q 001966 545 SFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVL-INGL 623 (989)
Q Consensus 545 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~ 623 (989)
-+.+.+..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-..++++... .|...-|... ...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46677777788888999999888877664 336667788888888999999999999888764 5555555443 4567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 001966 624 SKKLELREALGIFLELLEKGLVPDVDTYNSLITS--FCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTE 701 (989)
Q Consensus 624 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 701 (989)
.+.+.+..|+.+...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7888888888888877653 222111111111 235677777777777665322 34444444444567888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 702 PFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 702 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
|.+-|+...+-+--.....|+..+. ..+.++++.|+++..+++++|.
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 8888888877543334566665444 4466888888888888888876
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=8.7e-09 Score=105.37 Aligned_cols=258 Identities=13% Similarity=0.065 Sum_probs=154.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.-.|++..++.-.+ .....-..+.....-+.+++...|+++.++ .++.....|...+...++..+...++-+.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence 33566666665444 211111112233444556666677655433 33333333555555555555544445555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 774 LLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 774 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
-+++.......+ +..........+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-- 159 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-- 159 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 555544332222 2333333445566778888888777642 3445556667788888888888888888887
Q ss_pred CCCCHHHHHHHH--HHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHH
Q 001966 853 IEPDNFTYYVMI--DAHCKEG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFA 928 (989)
Q Consensus 853 ~~p~~~~~~~l~--~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 928 (989)
+..|.. ...++ +.....| .+.+|.-+|+++.+. ..+++.+++.++.+....|++++|.++++++++.++. ++.
T Consensus 160 ~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 160 IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 555554 22233 3333333 588899999998765 3457888888888889999999999999998888877 888
Q ss_pred hHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCcccchhHHHH
Q 001966 929 SCRTVANDFLREGVM-DYAAKVLECMASFGWVSNSISLADI 968 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l 968 (989)
++..++.+..-.|+. +.+.+.+..+... .|+......+
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~~~~~~ 275 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCChHHHHH
Confidence 888888888888887 5677777777653 6665444333
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=7.2e-07 Score=97.35 Aligned_cols=200 Identities=11% Similarity=-0.041 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPAT--ITYRSLLN 830 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~ 830 (989)
....++..+...|++++|...+++.++.. +.+...+..+...+...|++++|+.++++...... .|+. ..|..++.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344455555666666666666655542 12334455555556666666666666665554211 1121 23445556
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCC--CHH-HH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-CCCHHHHHHHHH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEP--DNF-TY-Y--VMIDAHCKEGNVMEALKL---KDLIFDKRM-PISAEAYKAIIK 900 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p--~~~-~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~ 900 (989)
.+...|++++|...++++.. ..| ... .. . .+...+...|..+.+.+. ......... ..........+.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA--PSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc--cccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 66666666666666666544 222 111 11 1 122223333332222222 111111000 111122235667
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCc--------cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 901 ALCKREEYSEALRLLNEMGESGFR--------LGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++...|+.++|...++.+...... .........+.++...|++++|.+.+..++..
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888776543211 12344567888899999999999999888653
No 104
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=1.7e-07 Score=97.19 Aligned_cols=220 Identities=10% Similarity=0.074 Sum_probs=165.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH--H
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE-KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL--Q 769 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 769 (989)
+...++.++|+.+.+++++.+ |-+..+|+.....+...| ++++++..++++++.++.+..+|......+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 344567788888888888763 556677777767777777 578899999999988888878888777777777763 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HhHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM---GN----RSEVF 842 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~ 842 (989)
+++.+++++++... .+..+|......+...|++++|++.++++++.+ +-|..+|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 77888888887543 367788888888888899999999999998864 44566777777666554 22 25678
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----------
Q 001966 843 VVFEEMLGKGIEPDNF-TYYVMIDAHCKE----GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE----------- 906 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 906 (989)
.+..+++. +.|++. .|+.+..++... ++..+|.+.+.++.+.++. +..++..|++.|+...
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 88888888 889776 888888777763 4457799999998876655 7888999999998642
Q ss_pred -------CHHHHHHHHHHH
Q 001966 907 -------EYSEALRLLNEM 918 (989)
Q Consensus 907 -------~~~~A~~~~~~~ 918 (989)
..++|.++++.+
T Consensus 281 ~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 235677777766
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=5.5e-07 Score=86.14 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=97.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhc
Q 001966 233 TVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVN-LIYGFSAA 311 (989)
Q Consensus 233 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~ 311 (989)
.++..+.+..++++|.+++..-.++.. .+....+.+..+|.+..++..|.+.++++... .|...-|.. -...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 344444455555555555555554421 24455555555555666666666666665543 223222222 12344555
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001966 312 KRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL 391 (989)
Q Consensus 312 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (989)
+.+.+|..+...|.+.. ..-..+.-.-.......+++..+..+.++....| +..+.+.......+.|++++|.+-|
T Consensus 92 ~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 66666666665554320 0001111111122344566666666666554321 3344444455555667777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 392 NEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNL 434 (989)
Q Consensus 392 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (989)
+...+-+-.....+||..+. ..+.|+++.|++...++.++|+
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 66665432333445554443 3356666777777666666654
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=1.7e-08 Score=108.62 Aligned_cols=238 Identities=18% Similarity=0.100 Sum_probs=196.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 713 GVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTT 792 (989)
Q Consensus 713 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 792 (989)
+.+|-...-..+...+...|-...|+.++++. ..|..++.+|+..|+..+|..+..+.+++ +||+..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 45777777778888999999999999998876 58888999999999999999999988874 788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEG 871 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 871 (989)
+++......-+++|.++.+..... +-..++......++++++.+.++.-++ ++|- ..+|..++.+..+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHh
Confidence 998887777788998888776542 233334444557999999999999999 8884 459999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+++.|.+.|...+...|. +.+.|+.+..+|.+.|+..+|...+.++++.+.+ +..+|.+........|.+++|.+.++
T Consensus 534 k~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999999999988766 8999999999999999999999999999999855 78889898999999999999999999
Q ss_pred HHHhCCCcc-cchhHHHHHhh
Q 001966 952 CMASFGWVS-NSISLADIVKG 971 (989)
Q Consensus 952 ~~~~~~~~p-~~~~~~~l~~~ 971 (989)
++.+..... |+.....+...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHhhhhcccchhhHHHHHH
Confidence 987643222 44444444433
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=3e-08 Score=106.64 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=188.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHH
Q 001966 678 GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNT 757 (989)
Q Consensus 678 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (989)
+.+|--..-..+...+...|-..+|..+|++. ..|...+.+|+..|+..+|..+..+-++ .+++...|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence 44555555567788899999999999999875 4588889999999999999999999988 6788889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 758 LIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN 837 (989)
Q Consensus 758 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 837 (989)
+++......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+ +--..+|..++.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888888888998888766532 22223333445799999999999988742 3456799999999999999
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
++.|.+.|...+. ..||.. .|+++..+|.+.|+..+|...++++.+.+.. +...|....-...+-|++++|++.+.
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999999 899877 9999999999999999999999999998854 77888888888999999999999999
Q ss_pred HHHHCC
Q 001966 917 EMGESG 922 (989)
Q Consensus 917 ~~~~~~ 922 (989)
++.+..
T Consensus 612 rll~~~ 617 (777)
T KOG1128|consen 612 RLLDLR 617 (777)
T ss_pred HHHHhh
Confidence 988654
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.97 E-value=0.00018 Score=80.36 Aligned_cols=106 Identities=12% Similarity=0.186 Sum_probs=59.0
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHH
Q 001966 274 CRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYG--FSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEE 351 (989)
Q Consensus 274 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 351 (989)
...+++.+|+...+++.++. |+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...|..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34566677777776666652 2322 2222222 34566666666666665555444 66666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001966 352 AFRVKDELVASGNQIDLVIYNTLLKGFCKSGKME 385 (989)
Q Consensus 352 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 385 (989)
|..+++...+. .|+......+-.+|.+.+++.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 66666666654 334444444445555555443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=5.4e-08 Score=98.79 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=112.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---H
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN-P-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-T---I 823 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~ 823 (989)
.....+..++..+...|++++|...+++++..... | ....+..++.++.+.|++++|+..++++.+. .|+ . .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34455666666677777777777777776654211 1 1134556666677777777777777777663 232 1 1
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 824 TYRSLLNGYNRM--------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 824 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
++..++.++... |+.++|.+.++++++ ..|+.. .+..+..... ..... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~~~--------------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRNRL--------------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHHHH--------------HHH
Confidence 445555555543 566667777776666 555543 2211111000 00000 011
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCc-c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFR-L-GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
...++..+.+.|++++|+..++++++..|+ | .+.++..++.++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235677788889999999999998887654 2 3578888999999999999998888877543
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.96 E-value=1.9e-08 Score=91.72 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=88.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 842 FVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..++++.++ +.|+. +..++..+...|++++|...|++++..++. +..+|..++.++.+.|++++|+..|+++++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666666 66664 445667777788888888888888777655 7777888888888888888888888888887
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHh
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 970 (989)
.|. ++.++..+|.++...|++++|+..++++++. .|+ ...+...+.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQN 134 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 776 7788888888888888888888888877653 565 344444433
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=8.4e-08 Score=92.63 Aligned_cols=147 Identities=10% Similarity=0.138 Sum_probs=113.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN 872 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 872 (989)
+..|...|+++......+.+.. |. . .+...++.+++...+++.++ .+|++. .|..++..+...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777765444322211 11 0 11235677888888888888 777655 78888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCC--HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKAL-CKREE--YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 949 (989)
+++|+..|+++++..+. +...+..++.++ ...|+ .++|.++++++++.+|+ ++.++..+|..+...|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988766 888888888874 67777 58999999999999888 889999999999999999999999
Q ss_pred HHHHHhC
Q 001966 950 LECMASF 956 (989)
Q Consensus 950 ~~~~~~~ 956 (989)
++++++.
T Consensus 167 ~~~aL~l 173 (198)
T PRK10370 167 WQKVLDL 173 (198)
T ss_pred HHHHHhh
Confidence 9998765
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=3.6e-08 Score=100.09 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH---
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-T---ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--- 858 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--- 858 (989)
....+..++..+...|++++|+..|+++... .|+ . .++..++.++...|++++|...++++++ ..|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchH
Confidence 3455666666677777777777777777663 232 1 3556666777777777777777777776 444332
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHh
Q 001966 859 -TYYVMIDAHCKE--------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 859 -~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
++..++.++... |++++|++.++++++..+. +...+..+..... .... -...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~--------------~~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR--------------LAGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH--------------HHHH
Confidence 344455555543 5666777777777665443 3222222211100 0000 0111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccc----chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 930 CRTVANDFLREGVMDYAAKVLECMASFGWVSN----SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
...++..|...|++++|...++++++. .|+ ...++.++..+...|++++|...++.+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVEN--YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH--CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 246788999999999999999999865 343 468899999999999999999998875
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.93 E-value=0.00024 Score=79.28 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=60.3
Q ss_pred HcCChHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChh
Q 001966 167 KIGLLDEAVDLFLCDTGCE-FVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAE 245 (989)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 245 (989)
..++|.+|+.-..++.+.- -.+...++.++ .+.+.|+.++|..+.+..-. ..+-|..|..++-.+|-..|+.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~----~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYG----LKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhcc----CCCCchHHHHHHHHHHHHHhhhh
Confidence 5567777777776665432 11222222222 23566777777744443322 23336666777777777777777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhH
Q 001966 246 EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDE 281 (989)
Q Consensus 246 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 281 (989)
+|..+|++.... .|+......+..+|.|.+.|.+
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 777777776654 3555555555566666665554
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=4.3e-08 Score=100.33 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=114.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHc
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTLSFNTLIEFLCIS 765 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 765 (989)
.+.+++...|+++.++ .++.... +|.......+...+...++-+.++.-+++.+.... .+.......+..+...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3444555555544322 2222222 34444443333333222344444444444333222 1222222333445556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hc--CCHhHH
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN--RM--GNRSEV 841 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~--g~~~~A 841 (989)
|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...++.++. .. +++++|
T Consensus 116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence 6666666665432 2445555566677777777777777777765 33332 2222333221 22 257777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY-SEALRLLNEMGE 920 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 920 (989)
.-+|+++.+. ..++..+.+.++.++...|++++|.+.++++++.++. ++.++..++-+....|+. +.+.+++.++.+
T Consensus 187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7777776652 2344556666667777777777777777777766654 666777777766777766 556667776666
Q ss_pred CCCc
Q 001966 921 SGFR 924 (989)
Q Consensus 921 ~~~~ 924 (989)
..|.
T Consensus 265 ~~p~ 268 (290)
T PF04733_consen 265 SNPN 268 (290)
T ss_dssp HTTT
T ss_pred hCCC
Confidence 6655
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=4.4e-08 Score=89.37 Aligned_cols=123 Identities=10% Similarity=0.019 Sum_probs=99.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 808 QLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 808 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.++++..+ +.|+. +..++..+...|++++|...|++++. +.|+.. .+..++.++...|++++|+..|+++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45556555 44553 55677788889999999999999988 778655 7888888999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
++. ++.++..++.++...|++++|+..++++++..|+ ++..+...+.+..
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI 137 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 765 8889999999999999999999999999998877 7777766665543
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=6e-06 Score=102.55 Aligned_cols=232 Identities=14% Similarity=0.057 Sum_probs=100.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC----C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHH
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGL----A--STLSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVN--P-NHDTY 790 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~ 790 (989)
+...+...|++++|...+++...... + ...+...++..+...|++++|...+++.... +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 33444445555555555555543211 0 1122333444555555555555555554421 110 0 11223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHHH-----
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQR--NLKPA--TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNFTY----- 860 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~----- 860 (989)
..+...+...|++++|...+++.... ...+. ...+..++..+...|+.++|...+.++... ........+
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 33344444556666665555554331 01111 223333444555556666666555555431 000000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc----c-CHHhHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKAIIKALCKREEYSEALRLLNEMGESGFR----L-GFASCRT 932 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~~~~~ 932 (989)
......+...|+.+.|.+.+........... ...+..++.++...|++++|...++++++.... . ...++..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 0011222335556666555544433211100 011234555555666666666666655443100 0 1234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 001966 933 VANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
++.++...|+.++|...+.++++
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666665554
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=1.6e-07 Score=89.24 Aligned_cols=153 Identities=16% Similarity=0.083 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..+...+...|+-+.+..+..+... ..|.. .....++....+.|++.+|+..+.++....++ |.+.|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHH
Confidence 4444455555555555555555433 22322 23333455555555555555555555555433 55555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKD 983 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 983 (989)
.|+.++|..-|.++++..+. ++.+.++++..|.-.|+++.|..++.+.... .+ |..+-.+++.....+|+..+|++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 55555555555555555555 5555555555555555555555555555432 22 34445555555555555555554
Q ss_pred H
Q 001966 984 L 984 (989)
Q Consensus 984 ~ 984 (989)
+
T Consensus 224 i 224 (257)
T COG5010 224 I 224 (257)
T ss_pred h
Confidence 4
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.90 E-value=1.9e-07 Score=106.77 Aligned_cols=132 Identities=10% Similarity=0.027 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVM 863 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 863 (989)
+...+..|.....+.|++++|..+++...+ +.|+ ......++.++.+.+++++|+..+++.+. ..|++. ....+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 344455555555555555555555555554 3343 22444455555555555555555555555 445444 33334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+.++.+.|++++|..+|+++...++. +..++..++.++...|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45555555555555555555543322 34555555555555555555555555555443
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=3.6e-06 Score=104.46 Aligned_cols=298 Identities=11% Similarity=-0.022 Sum_probs=194.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC----hhhHH
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRG--V----PLD--GSVYNALLSGCCKEEKLEQALELFRDMLEKGL-AS----TLSFN 756 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~ 756 (989)
...+...|++++|..++......- . .+. ......+...+...|++++|...+++..+..+ .+ ..+..
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 334455667777777666654320 0 011 11112233445678889999999888876433 22 13445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHH
Q 001966 757 TLIEFLCISNKLQEAHQLLDAMLEEQ--V-NP--NHDTYTTLINQYCKVQNMEKAKQLFLEMQQR----NLK--P-ATIT 824 (989)
Q Consensus 757 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~ 824 (989)
.++..+...|++++|...+++..... . .+ ....+..+...+...|++++|...+++.... +.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 67777889999999999999887421 1 11 1234556677888999999999998887652 211 1 2234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHH---
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGK--GIEPDN--FTYYVMIDAHCKEGNVMEALKLKDLIFDKRM--PISAEAY--- 895 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~--- 895 (989)
+..++..+...|++++|...+++.+.. ...+.. ..+..++..+...|++++|.+.++++..... .......
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 556677788889999999999998762 122322 2444567888899999999999998865311 1111111
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCccc-chhHH
Q 001966 896 -KAIIKALCKREEYSEALRLLNEMGESGFRLG---FASCRTVANDFLREGVMDYAAKVLECMASF----GWVSN-SISLA 966 (989)
Q Consensus 896 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 966 (989)
......+...|+.++|...+........... ...+..++.++...|++++|...++++.+. |..++ .....
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 1122445568999999999877554322211 112467889999999999999999988753 33333 34567
Q ss_pred HHHhhhhcCCChhhHHHHHhh
Q 001966 967 DIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 967 ~l~~~~~~~g~~~~a~~~~~~ 987 (989)
.++..+...|+.++|.+.+.+
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 788889999999999988875
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.84 E-value=0.00025 Score=74.54 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001966 630 REALGIFLELLEKGLVPDVDTYNSLITSFCKI---CDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLF 706 (989)
Q Consensus 630 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 706 (989)
+++.++++..++.-..-+..+|..+.+---.. ...+.....+++++..-...-..+|..+++...+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 45555555554432233444555444322111 125556666776665432333457788888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 001966 707 DEMTKRGVPL-DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP 785 (989)
Q Consensus 707 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 785 (989)
.++.+.+..+ +..+.++++.-+| .++.+-|..+|+--+.+...++.-....++.+...|+-..|..+|++++..+..|
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9999887666 6777888887776 5788999999999988877777777788888899999999999999999876555
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 786 N--HDTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 786 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
+ ...|..++..-..-|+.+.++++-+++..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4 37889999888889999988888777655
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=8.5e-07 Score=102.08 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=187.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP-----NHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
..+=|++.+...|.+...|...+....+.++.++|+++.++++.. +.+ -...|.++++.....|.-+...+.|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 345566677777777778888888888999999999999998854 222 12468888888888888888889999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C
Q 001966 812 EMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-I 890 (989)
Q Consensus 812 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 890 (989)
+..+. -.....|..|...|.+.+++++|.++++.|+++ ..-....|...+..+.++.+-++|..+++++++.-|. .
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 98873 344557889999999999999999999999984 2234558888889999999999999999999886333 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIV 969 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 969 (989)
+.+.....+..-++.|+.+.+..+|+..+...|+ -...|+.+++.-.++|+.+.++.+|+++...++.| ...+++.--
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 4566777788889999999999999999999888 78889999999999999999999999999999988 465554433
Q ss_pred hhh-hcCCChh
Q 001966 970 KGE-NSGVDLD 979 (989)
Q Consensus 970 ~~~-~~~g~~~ 979 (989)
-.| ..-|+-.
T Consensus 1678 LeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1678 LEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCchh
Confidence 333 3434443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.81 E-value=1.1e-06 Score=83.85 Aligned_cols=171 Identities=9% Similarity=0.064 Sum_probs=106.8
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
+-......|.+..+ ..+...+...|+-+.+..+..+.... ...|......++....+.|++.+|+..|++..... ++
T Consensus 56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~ 132 (257)
T COG5010 56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PT 132 (257)
T ss_pred HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CC
Confidence 33333444444444 55556666666666666666654432 12244455556666677777777777777776632 55
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
|..+|+.++.+|.+.|++++|...|.+.++ +.|+.. .+++++..+.-.|+++.|..++......+.. +..+-..++
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLA 209 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLA 209 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence 566777777777777777777777777777 555433 5666666666677777777777776655433 666666666
Q ss_pred HHHHccCCHHHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNE 917 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~ 917 (989)
.+....|++++|.++..+
T Consensus 210 l~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHhhcCChHHHHhhccc
Confidence 677777777777766654
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=7.1e-07 Score=86.24 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=117.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 001966 760 EFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRS 839 (989)
Q Consensus 760 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 839 (989)
-.|...|+++.+....+.+.. |. ..+...++.++++..+++..+.+ +.|...|..++..|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 457778887776544433321 11 01223667788888888887753 667889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF-TYYVMIDAH-CKEGN--VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 915 (989)
+|...|+++++ +.|++. .+..++.++ ...|+ .++|.++++++++.++. +..++..++..+.+.|++++|+..|
T Consensus 91 ~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 888665 777777764 67777 59999999999999877 8899999999999999999999999
Q ss_pred HHHHHCCCc
Q 001966 916 NEMGESGFR 924 (989)
Q Consensus 916 ~~~~~~~~~ 924 (989)
+++++..|.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 999988766
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=2.2e-07 Score=84.86 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=96.6
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 843 VVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+.++++++ ..|+.. ....++..+...|++++|.+.++++.+.++. +...|..++.++...|++++|...++++++.
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777 777654 5666778888899999999999999887755 8888999999999999999999999999888
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
.|+ ++..+..++.+|...|++++|.+.++++++. .|+...
T Consensus 81 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 81 DPD-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 877 7888899999999999999999999988764 676544
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=8.2e-07 Score=101.67 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=126.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYK 896 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 896 (989)
.+.+...+..|+......|++++|..+++..++ +.||.. ....++.++.+.+++++|+..++++++..+. +...+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 566788999999999999999999999999999 999888 6777889999999999999999999999877 999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 897 AIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.++.++.+.|++++|..+|++++..+|+ ++.++..++..+...|+.++|...|+++.+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999997776 7999999999999999999999999999764
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=1.3e-08 Score=65.20 Aligned_cols=32 Identities=56% Similarity=1.054 Sum_probs=18.7
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 001966 258 GCRPNVATYNVVIGGLCRVGFVDEAVELKNSM 289 (989)
Q Consensus 258 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 289 (989)
|+.||++|||++|++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=1.8e-06 Score=99.48 Aligned_cols=130 Identities=14% Similarity=0.183 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH------------------HHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL------------------LDAM 778 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------------------~~~~ 778 (989)
+...+..|+..+...+++++|.++.+..++..|.....+..++..+.+.+++.++..+ +..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 3444455555555555555555555555555544444444444444444444333332 2222
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 779 LEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 779 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
.+. ..+...+..++.+|-+.|+.++|...++++++.. +.|+.+.+.++..|... ++++|..++.+++.
T Consensus 110 ~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 110 LLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 221 1122234444444555555555555555554432 22344444455444444 55555555544443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.9e-06 Score=88.02 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=120.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG 871 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 871 (989)
..-.+...|.+++|+..++.+... .+.|...+......+.+.|+.++|.+.+++++. ..|+.. ....++.++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence 334455778899999999998874 344566667777888999999999999999998 888755 6667789999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
++++|+++++......+. ++..|..|+++|..+|+..+|..... ..|.-.|++++|+..+.
T Consensus 389 ~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 999999999998887766 88999999999999998888776554 35566789999999988
Q ss_pred HHHhCCCcccchhHHHHH
Q 001966 952 CMASFGWVSNSISLADIV 969 (989)
Q Consensus 952 ~~~~~~~~p~~~~~~~l~ 969 (989)
.+.+. .+++...|...-
T Consensus 450 ~A~~~-~~~~~~~~aR~d 466 (484)
T COG4783 450 RASQQ-VKLGFPDWARAD 466 (484)
T ss_pred HHHHh-ccCCcHHHHHHH
Confidence 88764 456666664433
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1e-05 Score=76.40 Aligned_cols=201 Identities=9% Similarity=0.060 Sum_probs=140.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC-----CCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 730 KEEKLEQALELFRDMLEKGL-----AST-LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
...+.++.++++.+++.... ++. ..+..+.-+....|+.+-|...++.+... ++.+..+-..-+..+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 34577888888888875322 222 24445566667788888888888887764 222222222223335567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
++|+++++.+.+.+ +-|.+++..-+......|+.-+|++.+.+.++. ..-|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888764 556677777777777788888888888888873 3346678888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 884 FDKRMPISAEAYKAIIKALCKRE---EYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 884 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
+-..|. ++..+..+++.+.-.| +.+-|.++|.++++..++ +..+++.+-.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI~l 233 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGIYL 233 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHHHH
Confidence 876544 6667777777766554 677888888888888765 6665554443
No 130
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.4e-06 Score=86.06 Aligned_cols=277 Identities=13% Similarity=0.024 Sum_probs=134.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 655 ITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKL 734 (989)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 734 (989)
...+.+..++..|+..+...++.... +..-|..-+..+...|++++|..-.+.-.+.. +-..........++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHH
Confidence 44555666666666666666665322 34444444445555566666655554443321 11222333344444444444
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 001966 735 EQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPNHDTYTTL-INQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~ 812 (989)
.+|.+.++... ++ ....|+..++.+..... +|....|..+ ..++.-.|++++|...-..
T Consensus 134 i~A~~~~~~~~--------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 134 IEAEEKLKSKQ--------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHHhhhhh--------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444444111 00 01112222222221111 1223333333 2234455666666655555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHhcCCHHHHHHH
Q 001966 813 MQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-------------MIDAHCKEGNVMEALKL 879 (989)
Q Consensus 813 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-------------l~~~~~~~g~~~~A~~~ 879 (989)
..+.. .-+......-..++.-.++.+.|...|++.+. +.|+....-. -++-..+.|++.+|.+.
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 54421 11122222222333445566666666666666 5555432111 12444556666666666
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 880 KDLIFDKRM---PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 880 ~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
|.+++..+| .++...|...+.+..+.|+..+|+.--+.+++.++. =..++..-+.++...++|++|.+-++++.+.
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666665533 234445555666666666666666666666666544 3455566666666666666666666665543
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=3.8e-08 Score=63.03 Aligned_cols=32 Identities=44% Similarity=0.956 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001966 363 GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEI 394 (989)
Q Consensus 363 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 394 (989)
|+.||+++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=9.7e-05 Score=69.95 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001966 698 DLTEPFQLFDEMTK---RG-VPLDGS-VYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 698 ~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 772 (989)
+.++..+++.++.. .| ..++.. .|..+.-+....|+.+.|...++.+...-|.+......-+..+...|++++|.
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 44555555554432 12 223332 23334444455677777777777777666545444444455566677788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
++++.+++.. +.|..++..-+...-.+|+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.+++++-
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-- 182 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL-- 182 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--
Confidence 8888877654 335566666666677777777888877777764 577788888888888888888888888888887
Q ss_pred CCCCHHH-HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 853 IEPDNFT-YYVMIDAHCKEG---NVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 853 ~~p~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
+.|-+.. +..+++.+.-.| +.+-|.++|.++++..+. +...+..+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI 231 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGI 231 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHH
Confidence 7786664 344555555444 466788888888877653 55555444
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=2.5e-05 Score=90.48 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001966 612 EVQTYSVLINGLSKKLELREALGIFLELLEK-GLVP---DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYN 687 (989)
Q Consensus 612 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (989)
+...|-..+..+...++.++|.+++++++.. ++.- -.-.|.++++.-..-|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4455666666666666666666666665543 1111 1123444444444445455555555555543 11234455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHc
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA--STLSFNTLIEFLCIS 765 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 765 (989)
.|...|.+.+.+++|.++++.|.++ +......|...+..+.++++-+.|..++.++++.-|. ........++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5555555556666666666666554 3344555555555555555555555555555554441 233334444445555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
|+.+++..+|+..+... +.-...|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55555555555555432 1133455555555555555555555555555544433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.4e-05 Score=83.18 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 001966 753 LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNG 831 (989)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 831 (989)
....-.+..+...|.+++|+..++.++... +-|+..+......+.+.++.++|.+.++++.. ..|+ ...+..++.+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHH
Confidence 344444555556666666666666665441 22455555556666666666666666666665 3444 4455666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+.+.|++.+|+.+++.... -.|++. .|..|+.+|...|+..+|...+-+ .|.-.|++++
T Consensus 384 ll~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~ 443 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQ 443 (484)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHH
Confidence 6666666666666666665 445333 666666666666666665544432 3444566666
Q ss_pred HHHHHHHHHHCC
Q 001966 911 ALRLLNEMGESG 922 (989)
Q Consensus 911 A~~~~~~~~~~~ 922 (989)
|+..+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 666666655543
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=9.5e-06 Score=81.90 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=86.1
Q ss_pred CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 717 DGSVYNALL-SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN 795 (989)
Q Consensus 717 ~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 795 (989)
....|..+- .++...|++++|...--..++....+..+...-..++.-.++.+.|...|++.+.. .|+......+-.
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~ 244 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASM 244 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhh
Confidence 334444332 23345677777777777777766656555555555666667777777777777654 333322111100
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhc
Q 001966 796 QYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-----TYYVMIDAHCKE 870 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~ 870 (989)
. .+.++.+.+. ++-..+.|++.+|.+.|.+.+. ++|++. .|...+....+.
T Consensus 245 ~----------~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 245 M----------PKKLEVKKER------------GNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred h----------HHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhccc
Confidence 0 0111111111 1223345555555555555554 444332 233333444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|+.++|+.--+.++..+.. -..+|..-+.++...++|++|.+-++++.+.
T Consensus 301 grl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555544322 2333444444455555555555555555544
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.57 E-value=9.8e-07 Score=78.35 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=89.2
Q ss_pred CC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 853 IE-PDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 853 ~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
+. ++. ...+.++..+...|++++|.++|+-+...++. +...|..|+-++...|++++|+..|..+....|+ |+..+
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~ 106 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP 106 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 45 433 36777788888999999999999999988866 8889999999999999999999999999999988 99999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 931 RTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 931 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.++|.++...|+.+.|++.|+.++..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988753
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=5.6e-05 Score=72.07 Aligned_cols=203 Identities=12% Similarity=0.041 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 753 LSFNTLIEFLCISNKLQEAHQL-LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
.+...+.......++.+.-+.- .+.+.......+......-+..|+..|++++|++..+... +......-...
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI 146 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHH
Confidence 3333344434334443333332 3333333233333333344456677777777777766521 12222222344
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+.+..+++-|...+++|.+ +. +..+...|+.++.+ .+...+|.-+|+++-++ .+|++.+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 5566677777777777776 33 33355555544332 34577788888888765 34577777778878888888
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHH-HHHHHHHHhCCCcccchhHHHH
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYA-AKVLECMASFGWVSNSISLADI 968 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~l 968 (989)
+++|..+++.++.+.++ ++.++.+++..-.-.|+-.++ .+.+..++. ..|+.....++
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~~vk~~ 281 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHPFVKHL 281 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcchHHHHH
Confidence 88888888888887777 777777777766666665444 444444432 35665554444
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=2e-05 Score=91.02 Aligned_cols=237 Identities=13% Similarity=0.133 Sum_probs=155.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 647 DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNT-LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALL 725 (989)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (989)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5667888999998999999999999977766 3433 3333444466666665555444 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
.......++ .+.+.+...+..-+.+..++..++.+|-+.|+.++|...++++++.. +.+..+.|.++..|... +.++
T Consensus 91 ~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333444445 33333333333334455688889999999999999999999998875 33778888888888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY-YVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
|++++.+.... +....++..+.+++.++++ ..|+...+ ..+.......-.+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc-----------
Confidence 99888887762 5556678888888888888 66665432 2222211111011
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 885 DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.--...+.-+...|.+.+++++++.+++.+++..++ +..+...++.+|.
T Consensus 220 ----~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 ----TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 112234444555566667777777777777777766 7777777777766
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=9.2e-05 Score=70.68 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 001966 758 LIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR--- 834 (989)
Q Consensus 758 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 834 (989)
-+..|+..|++++|+....... +....-.-+..+.+..+++-|.+.+++|++ -.+..|.+.|+.++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhc
Confidence 3455667777777776665521 222222223445566677777777777775 2344455556655543
Q ss_pred -cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH-H
Q 001966 835 -MGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA-L 912 (989)
Q Consensus 835 -~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~ 912 (989)
.++..+|.-+|++|-++ ..|+..+.+-.+.++...|++++|..++++++.+... +++++..++-+-...|+..++ .
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 33577777777777663 4556666666677777777777777777777777655 677777766666666655443 4
Q ss_pred HHHHHHHHCCCc
Q 001966 913 RLLNEMGESGFR 924 (989)
Q Consensus 913 ~~~~~~~~~~~~ 924 (989)
+.+.++....|+
T Consensus 263 r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 263 RNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhcCCc
Confidence 445555555544
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.0029 Score=66.83 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 768 LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ---NMEKAKQLFLEMQQRN-LKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 768 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
-+++..++++.++.-..-+..+|..+...--..- ..+.....++++...- +.| ..+|..+++.-.+..-...|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 3555666666554322223344444433221111 2445555666655431 223 3456677777777777788888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 844 VFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 844 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|.++.+.+..+ +...+..++.-+ -.++.+.|.++|+.-+++-.. +++.-...++-+...|+-..|..+|++++...
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 888887765555 333555555533 367788888888877765322 45555566777778888888888888887773
Q ss_pred --CccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 923 --FRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 923 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
++-...+|...+.--.+-|+...+.++-+++.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22235677777777777788877777766654
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=5.3e-06 Score=75.65 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=81.1
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 809 LFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 809 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.+++... ..|+ ......++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|...++++++.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445554 3343 34566677777788888888888888877 566444 6667778888888888888888888777
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++. +...+..++.++...|++++|...++++++..|+
T Consensus 81 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 81 DPD-DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 644 6777788888888888888888888888877755
No 142
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.44 E-value=0.0011 Score=66.93 Aligned_cols=297 Identities=15% Similarity=0.094 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 649 DTYNSLITSFCK--ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDG--FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 649 ~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
..|..|-.++.. .|+-..|.++-.+..+. +..|....--++.+ -.-.|+++.|.+-|+.|...- ..-..-...|
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgL 160 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGL 160 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHH
Confidence 346666666543 46777777766554432 22344333333332 334688888888888888530 1111122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH--HHHHHH---H
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYT--TLINQY---C 798 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--~l~~~~---~ 798 (989)
.-.-.+.|..+.|..+-+...+.-+.-..++...+...|..|+++.|+++++.-.+. -+.++..--. .|+.+- .
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 333346788888888888888887777778888888888888888888888876643 2344442221 222221 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 877 (989)
-..+...|...-.+..+ +.||.+ .-..-..++.+.|+..++-.+++.+-+ ..|....+... .+.+.|+.-...
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK--~ePHP~ia~lY--~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK--AEPHPDIALLY--VRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh--cCCChHHHHHH--HHhcCCCcHHHH
Confidence 12345556665555555 566644 334455677788888888888888877 55555443322 234555533222
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 001966 878 -KLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE-GVMDYAAKVLECMAS 955 (989)
Q Consensus 878 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 955 (989)
+=.+++....++ +.+....++.+....|++..|..-.+.+.... |...+|..++++-... |+-.+++.++-+.++
T Consensus 315 lkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~~--pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAREA--PRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhhC--chhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 112222233333 66777777888888888888888777777665 3466777788876665 888888888877776
Q ss_pred C
Q 001966 956 F 956 (989)
Q Consensus 956 ~ 956 (989)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=1.4e-06 Score=84.58 Aligned_cols=134 Identities=17% Similarity=0.113 Sum_probs=79.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+.-+.+.+++++|+..|.++++ +.|.+.+|+. -+.+|.+.|.++.|++-.+.++..++. ...+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence 4445666677777777777776 6666554443 456677777777777777777666544 55667777777777777
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCcccchhHH
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD---YAAKVLECMASFGWVSNSISLA 966 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~ 966 (989)
+++|++.|+++++..|+ +......|-.+-.+.+.-. .+....+.....|..||....+
T Consensus 165 ~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~ 225 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMF 225 (304)
T ss_pred HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhh
Confidence 77777777777766665 5544455554444444433 3333344333344335544433
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=9.1e-06 Score=74.67 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=83.6
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCC
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREE 907 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 907 (989)
..++...+...++.+.+ -.|+. .....++..+...|++++|...|+.+.+..+.+. ..+...++.++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~--~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAK--DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 36777888888888877 34443 2444466888888888888888888887653332 2356677888888888
Q ss_pred HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 908 YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
+++|+..++..... ...+..+..+|++|.+.|++++|+..|+++
T Consensus 101 ~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88888888663222 235667788888888888888888888765
No 145
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.41 E-value=2.7e-05 Score=69.52 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHH
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-ISAEAY 895 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 895 (989)
+-|+...-..|+.++...|+..||...|++.+. |+-- |......+.++....+++.+|...++++.+.++. -++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 445555555556666666666666666666554 3332 3334555556666666666666666666554321 122233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
..+++.|...|++++|+..|+.++..-| ++.....++..+.++|+..+|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4455556666666666666666555542 3444444555555666555555544444
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=1.5e-05 Score=84.42 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
.++..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|+.++++.++ ..|... .+..-+..+...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 3444444455555555555555543 2332 22344444455555555555555554 334222 333333445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
++++.|+++.+++++..|. +...|..|+.+|.+.|++++|+..++.
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555555555555555433 445555555555555555555555543
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=6e-06 Score=80.41 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
.-.+-+.+.++|++|+..|.+.++.. +-|.+.|..-+.+|.+.|.++.|++-.+..+. ++|... +|..|+.+|...
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHcc
Confidence 34666778899999999999999842 34577788889999999999999999999999 889766 999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHHHCC
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS---EALRLLNEMGESG 922 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~ 922 (989)
|++++|++.|+++++.+|. +...+..|-.+-.+.++.. .+...++-....+
T Consensus 163 gk~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig 216 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG 216 (304)
T ss_pred CcHHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc
Confidence 9999999999999987655 5555556655555555444 4444444433333
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.30 E-value=9.9e-07 Score=72.09 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMP-ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
.|++++|+.+++++++..+. ++...+..++.+|.+.|++++|+.++++ .+.++. ++.....+|.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777765442 2445555667777777777777777766 333333 44555566777777777777777
Q ss_pred HHHH
Q 001966 949 VLEC 952 (989)
Q Consensus 949 ~~~~ 952 (989)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=2e-05 Score=72.40 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=95.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC--HHhHHHHHHHHHhcCChh
Q 001966 869 KEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG--FASCRTVANDFLREGVMD 944 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 944 (989)
..++...+.+.++.+.+..+.- ...+...++..+...|++++|...|+++++..+++. +.+...|+.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5889999999999999875542 134566788999999999999999999999875543 456788999999999999
Q ss_pred HHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 945 YAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+|...++...... ..+..+...++++...|++++|...+++
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999997653321 2355778899999999999999999875
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.24 E-value=0.0082 Score=60.83 Aligned_cols=296 Identities=14% Similarity=0.101 Sum_probs=146.1
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 001966 615 TYSVLINGLSK--KLELREALGIFLELLEKGLVPDVDTYNSLITS--FCKICDVDKAFQLYEEMCEKGVEPNTL--TYNV 688 (989)
Q Consensus 615 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 688 (989)
-|..|-.++.. .|+-..|.+.-.+.... +..|......++.+ -.-.|+++.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555554443 44555665555443321 12233333333333 23357777777777777642 1111 1112
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChh--hHHHHHHH--H
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTL--SFNTLIEF--L 762 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~--~~~~l~~~--~ 762 (989)
|.-.-.+.|+.+.|..+-+.....- +.-...+.+.+...|..|+|+.|+++.+....... ++.. .-..|+.+ .
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 2222234666666666666665542 33445566666666777777777777766655443 1111 11111111 1
Q ss_pred HH-cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 001966 763 CI-SNKLQEAHQLLDAMLEEQVNPNHD-TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSE 840 (989)
Q Consensus 763 ~~-~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 840 (989)
.. ..+...|...-.+..+ +.||.. .-......+.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCC--c
Confidence 11 1234444444444333 234331 2223345566777777777777776663 344333222 12233333 2
Q ss_pred HHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHH
Q 001966 841 VFVVFEEMLG-KGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR-EEYSEALRLLNE 917 (989)
Q Consensus 841 A~~~~~~~~~-~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 917 (989)
+..-+++... ..+.|++. +...+..+....|++..|..--+.+... .|....|..|++.-... ||-.++...+.+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 3333333322 12556554 5555556666677777666666655543 34556666666665444 777777777776
Q ss_pred HHHCCCcc
Q 001966 918 MGESGFRL 925 (989)
Q Consensus 918 ~~~~~~~~ 925 (989)
.+...-+|
T Consensus 389 av~APrdP 396 (531)
T COG3898 389 AVKAPRDP 396 (531)
T ss_pred HhcCCCCC
Confidence 66654443
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.24 E-value=2.9e-05 Score=73.91 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
+..++..+...|++++|+..++++++..+.+. ...+..++.++.+.|++++|+..++++++..|. +...+..++.+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33444444445555555555555544322211 234445555555555555555555555554444 444444455555
Q ss_pred HhcCC--------------hhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCC
Q 001966 938 LREGV--------------MDYAAKVLECMASFGWVSNSISLADIVKGENSGVD 977 (989)
Q Consensus 938 ~~~g~--------------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 977 (989)
...|+ +++|.+.++++... .|+. +..+...+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 44444 46677777766542 4443 5555655555544
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=2.9e-05 Score=82.18 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
.-.+|+..+...++++.|+.+++++.+ ..|+.. ..++..+...++-.+|+++++++++..+. +...+...+..+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~--~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE--RDPEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh--cCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345566777788999999999999998 567644 44677787888999999999999987655 8888988999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+.++++.|+++.+++.+..|. +..+|..|+.+|...|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999988 89999999999999999999999998764
No 153
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.20 E-value=7.3e-06 Score=82.28 Aligned_cols=284 Identities=15% Similarity=0.135 Sum_probs=157.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHHH
Q 001966 657 SFCKICDVDKAFQLYEEMCEKGVEPNT----LTYNVLIDGFCKAGDLTEPFQLFDEMT--KR--GV-PLDGSVYNALLSG 727 (989)
Q Consensus 657 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~--~~--~~-~~~~~~~~~l~~~ 727 (989)
-+|+.|+......+|+..++.|.. |. .+|..|.++|.-.+++++|+++...=+ .+ |- --....-..|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 378888888888888888887643 33 345666667777777888777543211 10 10 0012222334444
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 728 CCKEEKLEQALELFRDMLE----KGL--ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ 801 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 801 (989)
+--.|.+++|+....+-+. .|- ....++..++..|...|+--... .-.+.|-.++.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------H
Confidence 5555666666655443332 121 23344555555555444311000 0000011111110 1
Q ss_pred CHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcC
Q 001966 802 NMEKAKQLFLEMQQ----RNLK-PATITYRSLLNGYNRMGNRSEVFVVFEEMLG----KGIEP-DNFTYYVMIDAHCKEG 871 (989)
Q Consensus 802 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p-~~~~~~~l~~~~~~~g 871 (989)
.++.|.++|.+-++ .|-. .-...|..|...|.-.|+++.|+..-+.-++ .|-.. .-..+..+++++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 13334444433222 1100 0123566777777778888888877655433 23222 2236777888888888
Q ss_pred CHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHHhHHHHHHHHHhcC
Q 001966 872 NVMEALKLKDLIFD----KRM-PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----LGFASCRTVANDFLREG 941 (989)
Q Consensus 872 ~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g 941 (989)
+++.|.+.|+..+. .|- .......+.|+..|.-..+++.|+.+..+=+....+ ....+++.|+.+|-..|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 88888888877653 221 223455667888888888888888887764432211 13667888888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 001966 942 VMDYAAKVLECMASF 956 (989)
Q Consensus 942 ~~~~A~~~~~~~~~~ 956 (989)
.-++|....+..++.
T Consensus 330 ~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 330 EHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHHH
Confidence 888887777665543
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=3.3e-05 Score=68.58 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVA 934 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 934 (989)
++..++..+.+.|++++|.+.++++++..+. ....++..++.++.+.|++++|...+++++...|.. .+.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556666777777777777777777765432 124566677777777888888888887777765442 255677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 935 NDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
.++...|++++|.+.++++++. .|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~--~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR--YPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence 7788888888888888777654 4543
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.19 E-value=2.3e-05 Score=83.79 Aligned_cols=106 Identities=18% Similarity=0.104 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+..+...|++++|+..|+++++ ..|+.. .+..++.++...|++++|+..++++++.++. +..+|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 345556677777777777777777 666544 6666677777777777777777777777654 677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 906 EEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
|++++|+..++++++..|. ++.....+..+
T Consensus 84 g~~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 7777777777777777766 55555544443
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.17 E-value=3.2e-05 Score=82.74 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=73.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG 871 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 871 (989)
.+..+...|++++|+++|++.++.. +.+...|..++.+|...|++++|+..++++++ +.|+.. .|..++.++...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3455667778888888888877742 33456777777778888888888888888877 677544 6677777777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
++++|+..|+++++.++. +..+...+..
T Consensus 85 ~~~eA~~~~~~al~l~P~-~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG-DSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 888888888888777654 5555555443
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.15 E-value=3.1e-05 Score=69.02 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
.....++..+...|++++|..+|+-+.. ++|.+. -|..|+-++-..|++++|+..|..+...++. ++..+..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3455666777888999999999998888 788666 6777888888889999999999999888865 88888889999
Q ss_pred HHccCCHHHHHHHHHHHHHCC
Q 001966 902 LCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+...|+.+.|++.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998887654
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=3.1e-05 Score=65.54 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++..+...|++++|+..++++.+..+. +...+..++.++...|++++|.+.++++++..+. +..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445556666677777777777777665433 4466666777777777777777777777776655 55667777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 001966 940 EGVMDYAAKVLECMAS 955 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~ 955 (989)
.|++++|...++++.+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776653
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=4.7e-05 Score=72.20 Aligned_cols=94 Identities=17% Similarity=-0.010 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
.+..++..+...|++++|+..+++++...+.+ ...+|..++.++...|++++|+..++++++..|. ....+..++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 55666677777788888888888887654332 2346778888888888888888888888877665 56667777777
Q ss_pred HH-------hcCChhHHHHHHHHH
Q 001966 937 FL-------REGVMDYAAKVLECM 953 (989)
Q Consensus 937 ~~-------~~g~~~~A~~~~~~~ 953 (989)
+. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 77 777777555544443
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=6.2e-05 Score=66.78 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKA 897 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 897 (989)
++..++..+...|++++|...++++++ ..|+. ..+..++.++.+.|++++|+..++++....+.. ...++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 456666777777888888888887776 34442 355667777888888888888888877654331 2566777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.++.+.|+.++|...++++++..|+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 778888888888888888888877765
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00013 Score=72.07 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=89.8
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE---EYSEALRLLNE 917 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 917 (989)
..-++.-+. .+|++ ..|..|+.+|...|+++.|...|.++.+..++ +++.+..++.++..+. ...++..++++
T Consensus 142 ~a~Le~~L~--~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 142 IARLETHLQ--QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHH--hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 333444444 56754 48999999999999999999999999988655 8888888888876543 47888999999
Q ss_pred HHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 918 MGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 918 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++..+|. |..+...|+..+...|++.+|...++.|++.
T Consensus 219 al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 219 ALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 9998888 8899999999999999999999999999765
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=98.03 E-value=7.1e-05 Score=67.00 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
..+..+.-+...|++++|..+|+-+.-.++. +...|..|+.++...+++++|+..|..+....++ ||...+..|.+|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHH
Confidence 4555566677899999999999988887766 7888999999999999999999999998888776 8888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCcccchhHHH
Q 001966 939 REGVMDYAAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
..|+.+.|+..|+.+++ .|....+..
T Consensus 117 ~l~~~~~A~~~f~~a~~---~~~~~~l~~ 142 (165)
T PRK15331 117 LMRKAAKARQCFELVNE---RTEDESLRA 142 (165)
T ss_pred HhCCHHHHHHHHHHHHh---CcchHHHHH
Confidence 99999999999998876 455444433
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.02 E-value=8.7e-06 Score=66.49 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=51.2
Q ss_pred cCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 835 MGNRSEVFVVFEEMLGKGIEP---DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
.|++++|+.+++++++ ..| +...+..++.++.+.|++++|+.++++ .+.++. +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4677777777777777 444 233455567777777777777777777 333332 445555667777777777777
Q ss_pred HHHHHH
Q 001966 912 LRLLNE 917 (989)
Q Consensus 912 ~~~~~~ 917 (989)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777765
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=6.4e-05 Score=63.50 Aligned_cols=95 Identities=29% Similarity=0.356 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
+..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|.+.++++.+..+. +...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 44556666667777777777777776 45544 35666667777777777777777777766544 4566777777777
Q ss_pred ccCCHHHHHHHHHHHHHCC
Q 001966 904 KREEYSEALRLLNEMGESG 922 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~ 922 (989)
..|++++|...+.++.+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 7777777777777766554
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.01 E-value=2.9e-05 Score=78.09 Aligned_cols=279 Identities=15% Similarity=0.099 Sum_probs=158.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH--c----CCCChhhHHHHHHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVPLDG----SVYNALLSGCCKEEKLEQALELFRDMLE--K----GLASTLSFNTLIEF 761 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~~~~l~~~ 761 (989)
-+|+.|+......+|+..++.|. .|. .+|..|..+|.-.+++++|+++...-+. + ......+...|+..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 36777777777777777777652 232 3455555666666666666665433221 1 11222333445555
Q ss_pred HHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 762 LCISNKLQEAHQLLDAMLE----EQVN-PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG 836 (989)
Q Consensus 762 ~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 836 (989)
+--.|.+++|+-...+-+. .|-. .....+..+.+.|...|+--.-. .-.+.|-.|+.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------H
Confidence 5555666666554443321 1100 01122333444444333211000 0000111111111 1
Q ss_pred CHhHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHccC
Q 001966 837 NRSEVFVVFEEMLG----KGIE-PDNFTYYVMIDAHCKEGNVMEALKLKDLIFD----KRMP-ISAEAYKAIIKALCKRE 906 (989)
Q Consensus 837 ~~~~A~~~~~~~~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g 906 (989)
.++.|.++|.+=++ .|-. ..-..|..|++.|.-.|+++.|+..-+.=++ .|-. ....++..++.++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 13444555544333 1111 1122577788888889999999987655433 2211 12356888999999999
Q ss_pred CHHHHHHHHHHHHH----CCCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCC-cccchhHHHHHhhhhcCC
Q 001966 907 EYSEALRLLNEMGE----SGFR-LGFASCRTVANDFLREGVMDYAAKVLECMAS----FGW-VSNSISLADIVKGENSGV 976 (989)
Q Consensus 907 ~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g 976 (989)
+++.|.+.|+..+. .+.. ......+.|++.|.-..+++.|+.+..+=+. .+- .-....++.|++++..-|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 99999999988653 3322 2466789999999999999999998876432 111 123567899999999999
Q ss_pred ChhhHHHHHh
Q 001966 977 DLDESKDLMK 986 (989)
Q Consensus 977 ~~~~a~~~~~ 986 (989)
..++|..+.+
T Consensus 330 ~h~kAl~fae 339 (639)
T KOG1130|consen 330 EHRKALYFAE 339 (639)
T ss_pred hHHHHHHHHH
Confidence 9999987765
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.00 E-value=0.029 Score=58.38 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 001966 512 NSLIIGLCKAKRMDEARIYLVEMLRRG----LKPNIHSFRAFILGYC 554 (989)
Q Consensus 512 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~ 554 (989)
+..+.++...|++.+++.+++++...= ..-+..+|+.++-.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 445666777888888888877776542 3356777777655554
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.00 E-value=2.6e-05 Score=59.97 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=30.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
++..+.+.|++++|+..|+++++..|+ ++.++..+|.++...|++++|...++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554 555555555555555555555555555543
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=0.00028 Score=67.15 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|+..++++++..+. +...+..++.++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44444444445555555555555544111111 123444445555555555555555555544333 344444445455
Q ss_pred HccCC--------------HHHHHHHHHHHHHCCCc
Q 001966 903 CKREE--------------YSEALRLLNEMGESGFR 924 (989)
Q Consensus 903 ~~~g~--------------~~~A~~~~~~~~~~~~~ 924 (989)
...|+ +++|.+.+++++...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 44444 56777777777766544
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=2.8e-05 Score=60.76 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG-VMDYAAKVLECMAS 955 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 955 (989)
++..|..++..+...|++++|+..|+++++..|+ ++.++..+|.+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5667778888888888888888888888888777 7778888888888888 68888888887765
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.96 E-value=2.8e-05 Score=59.79 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.++..+.+.|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3567889999999999999999998866 8999999999999999999999999999998876
No 171
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.93 E-value=1.5e-05 Score=52.27 Aligned_cols=33 Identities=55% Similarity=1.006 Sum_probs=19.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 001966 265 TYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPD 297 (989)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 297 (989)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666665555554
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.002 Score=58.06 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHH
Q 001966 853 IEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCR 931 (989)
Q Consensus 853 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 931 (989)
+.|....-..|+.++.+.|++.||...|++...--.-.|......++++....++..+|...++++.+.+|.. .+....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4455554455555555555555555555555543223344555555555555555555555555555544321 233445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCChhhHH
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDLDESK 982 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 982 (989)
.++..|...|++++|+..|+.+.+. -|++.........+.++|..+++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 5555555555555555555555432 455555555555555555444443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00055 Score=76.44 Aligned_cols=147 Identities=13% Similarity=0.067 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 001966 818 LKPATITYRSLLNGYNRM-----GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE--------GNVMEALKLKDLI 883 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~--------g~~~~A~~~~~~~ 883 (989)
.+.+...|...+++.... +..+.|..+|+++++ .+|+.. .+..++.++... ++...+.+..+++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 344555666555553321 235677777777777 677665 344333333221 1234455555554
Q ss_pred HhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 884 FDKR-MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 884 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
.... .+.++.+|..++-.+...|++++|...++++++.++ +..+|..+|.++...|+.++|.+.++++... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 4431 233567777777777778888888888888888874 5678888888888888888888888888654 6765
Q ss_pred hhHHHHHh
Q 001966 963 ISLADIVK 970 (989)
Q Consensus 963 ~~~~~l~~ 970 (989)
.+|+..-+
T Consensus 487 pt~~~~~~ 494 (517)
T PRK10153 487 NTLYWIEN 494 (517)
T ss_pred chHHHHHh
Confidence 55544333
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.86 E-value=0.00026 Score=71.31 Aligned_cols=98 Identities=9% Similarity=-0.065 Sum_probs=75.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc--cCHHhHHHHHHHHHh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFR--LGFASCRTVANDFLR 939 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 939 (989)
.....+.|++++|+..|+..++..|... +.++.+++.+|...|++++|+..|+++++..|+ ..+.++..++.++..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 3444667888999988888888755421 467888888899999999999999988876654 136677788888888
Q ss_pred cCChhHHHHHHHHHHhCCCcccch
Q 001966 940 EGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.|++++|.++|+.+++. -|++.
T Consensus 230 ~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred cCCHHHHHHHHHHHHHH--CcCCH
Confidence 99999999999888764 56643
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0005 Score=67.95 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE---GNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
+-|...|..|+..|...|+.+.|...|.+..+ +.|++. .+..++.++..+ ....+|..++++++..++. |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 66788999999999999999999999999999 777666 555555555443 2367899999999998876 8899
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
...|+..++..|++.+|...|+.|++..|.-+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999886633
No 176
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.84 E-value=2.5e-05 Score=51.16 Aligned_cols=33 Identities=48% Similarity=1.018 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001966 370 IYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPN 402 (989)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 402 (989)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444444
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.84 E-value=0.057 Score=56.31 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=23.3
Q ss_pred HhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 101 KVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 101 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...|.-+-+|-+.+++.+|..+|.++..
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~ 34 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYD 34 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHH
Confidence 3456667788899999999999999887
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.043 Score=59.92 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC--------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 470 KPNAIIYTNLVSTYFKKNKLQEAGKLVERMRRE-GITP--------DVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLK 540 (989)
Q Consensus 470 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (989)
.|.+..|..+.......-.++-|...|-+.... |++. +...-.+=|.+| -|++++|.+++-+|-+++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 355566666655555555555555555443321 1100 000111112222 3667777776666544321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 541 PNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPN----DVIYTSIVDGYCKEGNIAEAISKFRC 603 (989)
Q Consensus 541 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (989)
.|..+.+.|++-...++++.- |-..| ...++.+.+.+.....+++|.+.+..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 244455556665555444321 11111 13455555555555556666555543
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.83 E-value=5.5e-05 Score=59.02 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCC
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE-EYSEALRLLNEMGESGF 923 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 923 (989)
..|..++..+...|++++|+..|+++++.++. +..+|..++.++.+.| ++++|++.++++++..|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666677777777777777777777776655 6677777777777777 57777777777776553
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=4.3e-05 Score=59.48 Aligned_cols=51 Identities=25% Similarity=0.351 Sum_probs=28.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+.|++++|++.++++++..|+ +..++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555 555555555555555555555555555543
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=0.00032 Score=66.47 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD----NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
...|..++..+...|++++|...|++++. +.|+ ..++..++.++...|++++|++.++++++..+. ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 44567777777788888888888888877 3332 136777888888888888888888888876544 5666777
Q ss_pred HHHHHH-------ccCCHHHHHHHH
Q 001966 898 IIKALC-------KREEYSEALRLL 915 (989)
Q Consensus 898 l~~~~~-------~~g~~~~A~~~~ 915 (989)
++.++. ..|++++|...+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH
Confidence 777776 555655443333
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0012 Score=73.85 Aligned_cols=146 Identities=13% Similarity=0.134 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 714 VPLDGSVYNALLSGCCK--E---EKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD 788 (989)
Q Consensus 714 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 788 (989)
.+.+...|...+.+... . ++.+.|+.+|+++++..|....++..++.++.....+ .|..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~---------------~~~~- 396 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ---------------QPLD- 396 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc---------------CCcc-
Confidence 45666777776666432 2 2366888888888888887766666655544322110 1100
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAH 867 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 867 (989)
.++...+.+..++.... ..+.+..+|..++..+...|++++|...++++++ +.|+...|..++..+
T Consensus 397 -----------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~ 463 (517)
T PRK10153 397 -----------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVY 463 (517)
T ss_pred -----------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 01112222222222221 1122334455554444455666666666666666 555555555556666
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 001966 868 CKEGNVMEALKLKDLIFDKRM 888 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~ 888 (989)
...|+.++|.+.|+++...+|
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 666666666666666655543
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.0015 Score=67.87 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=95.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCCHH--HHHHH
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK---GIEPDNF--TYYVM 863 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~--~~~~l 863 (989)
++.|-..|++++|.+.|.+..+. +-+.+ ...|...+.+|.+. ++++|+..++++++. .-.|+.. .+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33444555555555555544321 10001 12333333443333 666666666666551 1122222 44556
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC--CC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHH-hHH
Q 001966 864 IDAHCKE-GNVMEALKLKDLIFDK--RM-PI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----LGFA-SCR 931 (989)
Q Consensus 864 ~~~~~~~-g~~~~A~~~~~~~~~~--~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~ 931 (989)
+..|... |++++|++.|+++.+. .. .+ -...+..++..+.+.|++++|++.|+++.....+ .+.. .+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 6677777 7888888888877754 10 11 1234566777778888888888888877654322 1121 234
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc------chhHHHHHhhhh--cCCChhhHHHHHh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN------SISLADIVKGEN--SGVDLDESKDLMK 986 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~--~~g~~~~a~~~~~ 986 (989)
..+.++...|+...|.+.+++..+. .|. ......|..++. ....+.++..-++
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~--~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ--DPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT--STTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 4555677778888888888877533 332 233444555542 2334444444443
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.0049 Score=63.99 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=20.5
Q ss_pred hHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 100 LKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 100 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...|...+..+-..|++++|...|.++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 45666666777777888888888888765
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.74 E-value=7.8e-05 Score=57.98 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=57.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
.+.|++++|++.++++++..|. +..++..++.+|.+.|++++|..+++++....|+ ++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHHHhc
Confidence 5689999999999999998877 9999999999999999999999999999998877 5666655543
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.013 Score=58.70 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLASTLSF---NTLIEFLCISNKLQEAHQLLDAMLEE 781 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 781 (989)
...+...|++++|++.|+++....|.+..+. ..++.++.+.+++++|...+++.++.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455666666666666666555333322 34555666666666666666666643
No 187
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.72 E-value=4.9e-05 Score=49.27 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=14.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 001966 265 TYNVVIGGLCRVGFVDEAVELKNSMVEKGLVP 296 (989)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 296 (989)
+|+.++.++++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.69 E-value=0.001 Score=57.47 Aligned_cols=94 Identities=23% Similarity=0.080 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVAND 936 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 936 (989)
..+++++...|+.++|+.+|+++++.|.... ..++..++..+...|++++|..++++.....|+. +......++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3445566666666666666666666554422 3345566666666666666666666666554431 22334445666
Q ss_pred HHhcCChhHHHHHHHHHH
Q 001966 937 FLREGVMDYAAKVLECMA 954 (989)
Q Consensus 937 ~~~~g~~~~A~~~~~~~~ 954 (989)
+...|+.++|.+++-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666677766666665443
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.0039 Score=62.51 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH---H
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT-I---TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN---F 858 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~ 858 (989)
+...+-..+..+...|++++|++.|+++... -|+. . ....++.++.+.+++++|...+++.++ ..|++ .
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchH
Confidence 3333334555667788999999999998874 3432 2 235667788888999999999999888 45543 2
Q ss_pred -HHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 001966 859 -TYYVMIDAHCKEG---------------N---VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMG 919 (989)
Q Consensus 859 -~~~~l~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 919 (989)
++..++.++...+ + ..+|++.++++++.-|. +. -..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~--------------ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQ--------------YTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-Ch--------------hHHHHHHHHHHHH
Confidence 3444443322221 1 34566777777766433 21 1222222222211
Q ss_pred HCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc----chhHHHHHhhhhcCCChhhHHHHHh
Q 001966 920 ESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN----SISLADIVKGENSGVDLDESKDLMK 986 (989)
Q Consensus 920 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 986 (989)
+.- ..--...+.-|.+.|+|..|..-++.+++. =|+ .+.++.+.+++...|..++|.+..+
T Consensus 172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 110 011134555566666666666666666542 122 3445566666666666666655443
No 190
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.65 E-value=6.8e-05 Score=48.59 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 001966 228 VYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRP 261 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 261 (989)
+.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999877
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.043 Score=59.92 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 540 KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNS-GLVP--------NDVIYTSIVDGYCKEGNIAEAISKFRCMLARGIL 610 (989)
Q Consensus 540 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 610 (989)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+-+.+| -|++++|.+++-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 455666666666655555566665555443321 1110 001111111222 266677776666554431
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 611 PEVQTYSVLINGLSKKLELREALGIFLELLEK-GLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVL 689 (989)
Q Consensus 611 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 689 (989)
..|....+.|++-...++++.--.. .-..-...++.+...+.....+++|.++|..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 1233344455554444444321000 00001233445555555555555555555433211 123
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELF 741 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 741 (989)
+.++.+..++++-..+... +|.+....-.+.+++...|.-++|.+.|
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 3333333333333322222 2333444445555555555555555443
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=7.1e-05 Score=47.25 Aligned_cols=28 Identities=43% Similarity=0.826 Sum_probs=13.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHC
Q 001966 265 TYNVVIGGLCRVGFVDEAVELKNSMVEK 292 (989)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 292 (989)
+||+++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0022 Score=55.41 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCC--HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCc---CHHH
Q 001966 156 LVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPS--LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEF---DVYS 230 (989)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 230 (989)
.+.+.+..++-..|+.++|+..|++....|.... ..++-.+...+...|++++|..++++... .+|. +...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCccccHHH
Confidence 3556778888999999999999999988876654 44666778888888888888888888877 4333 3333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 001966 231 YTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGL 273 (989)
Q Consensus 231 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (989)
...+.-++...|+.++|++.+-.... ++...|.--|..|
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 44445567778888888887766654 2333444444444
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.55 E-value=0.0011 Score=66.84 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAI 898 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 898 (989)
|........+.|++++|+..|+.+++ ..|+. ..+..++.++...|++++|+..|+.+++..+. ....++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 33333333556788888888888887 56654 36667778888888888888888888865322 246677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.++...|+.++|...|+++++..|+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 88888888888888888888888766
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=9e-05 Score=46.77 Aligned_cols=31 Identities=39% Similarity=0.665 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 001966 229 YSYTTVIDAYFKVRNAEEGKRVFSEMGEKGC 259 (989)
Q Consensus 229 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 259 (989)
+|||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998764
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.54 E-value=0.13 Score=52.18 Aligned_cols=219 Identities=21% Similarity=0.157 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLA--STLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNHDTYTTLINQYCKVQNMEKAKQL 809 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 809 (989)
....+...+......... ...........+...+.+..+...+...... ........+......+...+++.++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443332 2344444555555555555555555555431 1122334444555555555556666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHHhcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 810 FLEMQQRNLKPATITYRSLLN-GYNRMGNRSEVFVVFEEMLGKGIEPD----NFTYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 810 ~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
+.........+ ......... .+...|++++|...+.+.+. ..|. ...+......+...+++++|...+.++.
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 66655532111 112222222 55666666666666666654 3331 1233333344555667777777777766
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 885 DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..........+..+...+...+++++|...+.++....+. ....+..++..+...|+++++...+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6532213556666666677777777777777777666544 345556666666655667777776666654
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.0014 Score=63.97 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVAN 935 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 935 (989)
.+..+-.+.+.|++.+|...|...++..|. -.+.++.+|+.++..+|++++|...|..+.+..|+- -|.++..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 344455567889999999999999987543 346789999999999999999999999999876651 3778999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 936 DFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 936 ~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
+..+.|+.++|..+|+.+.+. =|++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 999999999999999998865 3554
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.48 E-value=0.00057 Score=54.00 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
|.+.+++++|+++++++++.+|+ ++..+..+|.++...|++++|.+.++.++
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444444444 44444444444444444444444444444
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.0082 Score=58.68 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=22.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNL--KPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
+...|++++|++.|+.+..... +-.......++.++.+.|++++|...+++.++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555444210 00122334444445555555555555555444
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.054 Score=52.06 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK-----GIEPDNFTYYVM 863 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l 863 (989)
..+.++..+...|.+.-...+++++.+...+.++.....|++.-.+.|+.+.|...|++..+. ++.-......+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455667777778888888888888888765667777888888888899999998888866542 222222333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 925 (989)
...+.-++++.+|...+.++...++. ++.+-+.-+-++.-.|+..+|++.++.+.+..|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 56677788899999999999988766 77777777778888899999999999999887764
No 201
>PRK11906 transcriptional regulator; Provisional
Probab=97.44 E-value=0.0056 Score=64.76 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 802 NMEKAKQLFLEMQQ-RNLKPA-TITYRSLLNGYNRM---------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 802 ~~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
..+.|..+|.+... ..+.|+ ...|..++.++... ....+|.++.+++++ +.|++. ....++.+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35678888888872 125565 44666666665322 245677788888888 777555 66667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHH-HHHHHhcCChhHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTV-ANDFLREGVMDYAAK 948 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 948 (989)
.|+++.|...|+++...+|. .+.+|...+..+.-.|+.++|.+.++++++..|.--......+ .+.|+.. ..++|++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 78888888888888888766 7788888888888888999999988888888766322222332 3345544 4466666
Q ss_pred HHH
Q 001966 949 VLE 951 (989)
Q Consensus 949 ~~~ 951 (989)
+|-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 664
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.42 E-value=0.00065 Score=53.65 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=58.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
..++.+.+++++|++.++.+++.+|. +...|...+.++.+.|++++|...++++++..|+ ++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~-~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPD-DPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC-cHHHH
Confidence 46788999999999999999999877 8899999999999999999999999999999887 54443
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0025 Score=65.53 Aligned_cols=96 Identities=13% Similarity=-0.049 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
.++.+++.++.+.+++.+|++.-+++++.++. |..++..-+.++...|+++.|+..|+++++..|. |-.+-..|+..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 45777888999999999999999999999866 9999999999999999999999999999999988 888888888877
Q ss_pred HhcCChhHH-HHHHHHHHh
Q 001966 938 LREGVMDYA-AKVLECMAS 955 (989)
Q Consensus 938 ~~~g~~~~A-~~~~~~~~~ 955 (989)
.+..++.+. .++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 777777554 888888875
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0046 Score=63.78 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 721 YNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI-SNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCK 799 (989)
Q Consensus 721 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 799 (989)
|..++....+.+..+.|..+|.++.+.+......|...+..-.. .++.+.|..+|+..++. +..+...|...++.+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 34444444444444444444444443322233333333333222 23333344444444432 22234444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPAT---ITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
.|+.+.|..+|++.... +.++. ..|...+.--.+.|+.+....+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555544432 22221 2444444444455555555555555554
No 205
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.35 E-value=0.0026 Score=67.97 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=69.0
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 001966 332 DTVAYYALIDGFVKQGDVEEAFRVKDELVAS--GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSL 409 (989)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 409 (989)
+......+++......+++++..++...... ....-..|..++|+.|.+.|..++++.+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444445555555555555666655555543 11111234456666666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhc
Q 001966 410 IQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHC 451 (989)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 451 (989)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666655555555555544444443
No 206
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.33 E-value=0.23 Score=50.29 Aligned_cols=222 Identities=23% Similarity=0.204 Sum_probs=144.1
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRGVP-LDGSVYNALLSGCCKEEKLEQALELFRDMLE--KGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
+....+...+......... .....+......+...+++..+...+..... ..+.....+......+...+.+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 1245555666666677777777777777665 334555566666677777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001966 774 LLDAMLEEQVNPNHDTYTTLIN-QYCKVQNMEKAKQLFLEMQQRNLKP----ATITYRSLLNGYNRMGNRSEVFVVFEEM 848 (989)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 848 (989)
.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++.+++...+.++
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777777543332 112222222 67778888888888888755 233 2334444555567778888888888888
Q ss_pred HhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 849 LGKGIEPD--NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 849 ~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.. ..|+ ...+..+...+...+++++|...+..+....+. ....+..+...+...|+.+++...+.+.....+.
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 87 5555 346777778888888888999888888876433 3556666666666777789999888888877654
No 207
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.003 Score=52.12 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=40.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCChhhHHHH
Q 001966 339 LIDGFVKQGDVEEAFRVKDELVASGN-QIDLVIYNTLLKGFCKSG--------KMEKAREVLNEIIRMGIEPNSRTYTSL 409 (989)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~l 409 (989)
.|..++..|++.....+|+.+.+.|+ -|++.+|+.++...++.. ++-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555555555555555 555555555555544321 233445555555555556666666655
Q ss_pred HHHHH
Q 001966 410 IQGYC 414 (989)
Q Consensus 410 i~~~~ 414 (989)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55544
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.028 Score=54.89 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGLAS---TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
.+..+...|++++|++.|+.+....|.+ ..+...++.++.+.|++++|...+++.++.-+.....-+.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~- 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY- 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH-
Confidence 3444456666777777777776665522 234555666666666666666666666643111111111111111110
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLK 880 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 880 (989)
+..... . .......+...+|...|+.+++ .-|+.. ...+|.+.+
T Consensus 90 ---------~~~~~~--~----------~~~~~D~~~~~~A~~~~~~li~--~yP~S~-------------y~~~A~~~l 133 (203)
T PF13525_consen 90 ---------YKQIPG--I----------LRSDRDQTSTRKAIEEFEELIK--RYPNSE-------------YAEEAKKRL 133 (203)
T ss_dssp ---------HHHHHH--H----------H-TT---HHHHHHHHHHHHHHH--H-TTST-------------THHHHHHHH
T ss_pred ---------HHhCcc--c----------hhcccChHHHHHHHHHHHHHHH--HCcCch-------------HHHHHHHHH
Confidence 000000 0 0001112334556666666665 444432 223343333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHH
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
..+.+. =...-..+++.|.+.|++..|+..++.+++.-|+. ...++..++.+|.+.|..+.|.
T Consensus 134 ~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 134 AELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 333211 11222345666777777777777777777765552 1345667777777777776443
No 209
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.004 Score=66.56 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 297 DSYTYVNLIYGFSAAKRLGDVRLVLSELIGK--GLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTL 374 (989)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 374 (989)
+.+....+++.+....+++++..++-+.... ....-+.|..++|+.|.+.|..+++..++..=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444444444444444332 11222334445555555666666666655555555666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 001966 375 LKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCR 415 (989)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 415 (989)
++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666555555544555555554544443
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.0022 Score=66.21 Aligned_cols=148 Identities=11% Similarity=0.008 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK-EGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
.+|..+++...+.+..+.|..+|.++.+.+ ......|...+..-.. .++.+.|.++|+..++.-+. +...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 578899999999999999999999998621 1234456666666445 56777799999999987434 88999999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCc-c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhc
Q 001966 902 LCKREEYSEALRLLNEMGESGFR-L-GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENS 974 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 974 (989)
+...|+.+.|..+|++++..-+. . ....|..++..=.+.|+.+...++.+++.+. -|+......+.+-|.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry~~ 152 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRYSF 152 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT-B
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhc
Confidence 99999999999999999877543 1 1357899999999999999999999999774 6766666666665543
No 211
>PRK11906 transcriptional regulator; Provisional
Probab=97.27 E-value=0.013 Score=62.05 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 767 KLQEAHQLLDAMLE-EQVNPNH-DTYTTLINQYCKV---------QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM 835 (989)
Q Consensus 767 ~~~~A~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 835 (989)
..+.|+.+|.+.+. ....|+. ..|..+..++... ....+|.++.++..+.+ +.|..+...++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45788888999882 2345543 4555555444321 23456777888888754 56777888888888888
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS-AEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
|+++.|...|+++.. ++|+.. +|...+..+.-.|+.++|.+.++++++..|.-- ..+....++.|+.. ..++|++
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 889999999999999 899877 788888888899999999999999988765422 22333344455544 5778888
Q ss_pred HHHH
Q 001966 914 LLNE 917 (989)
Q Consensus 914 ~~~~ 917 (989)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 8876
No 212
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.26 E-value=0.0065 Score=53.43 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH---HhHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRM--PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGF---ASCRTV 933 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l 933 (989)
.+..-+....+.|++++|++.++.+...-| +-...+...++.+|.+.|++++|+..+++.++.+|. ++ -+++..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHHHH
Confidence 344445566677888888888888776522 224566777888888888888888888888888776 43 345566
Q ss_pred HHHHHhcCC---------------hhHHHHHHHHHHhCCCcccc
Q 001966 934 ANDFLREGV---------------MDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 934 ~~~~~~~g~---------------~~~A~~~~~~~~~~~~~p~~ 962 (989)
|-++..... ..+|...|+.+++. -||+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~--yP~S 132 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR--YPNS 132 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH--CcCC
Confidence 666666655 66777778777654 5664
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.24 E-value=0.0044 Score=52.17 Aligned_cols=92 Identities=24% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHhHHHHHHHHHhcC
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG---FASCRTVANDFLREG 941 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 941 (989)
.++.+.|+.++|++.|.+++..-|+ .+.+|+.-+.++.-+|+.++|+.-++++++...... -.+|...+..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4455566666666666666665444 566666666666666666666666666665532211 223555666666666
Q ss_pred ChhHHHHHHHHHHhCC
Q 001966 942 VMDYAAKVLECMASFG 957 (989)
Q Consensus 942 ~~~~A~~~~~~~~~~~ 957 (989)
+.+.|+.-|+.+-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666655544
No 214
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.24 E-value=0.0031 Score=52.08 Aligned_cols=79 Identities=15% Similarity=0.296 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHccC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 001966 230 SYTTVIDAYFKVRNAEEGKRVFSEMGEKGC-RPNVATYNVVIGGLCRVG--------FVDEAVELKNSMVEKGLVPDSYT 300 (989)
Q Consensus 230 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~ 300 (989)
|-...|.-++..+++...-.+|+.+.+.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334455556666777777777777777666 677777777776666532 12233444444444444444444
Q ss_pred HHHHHHHH
Q 001966 301 YVNLIYGF 308 (989)
Q Consensus 301 ~~~li~~~ 308 (989)
|+.++..+
T Consensus 107 Ynivl~~L 114 (120)
T PF08579_consen 107 YNIVLGSL 114 (120)
T ss_pred HHHHHHHH
Confidence 44444443
No 215
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.20 E-value=0.038 Score=55.62 Aligned_cols=233 Identities=14% Similarity=0.091 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--CHHH
Q 001966 720 VYNALLSGCCKEEKLEQALELFRDMLEKGL-----ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV---NP--NHDT 789 (989)
Q Consensus 720 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~ 789 (989)
.|..+..++.+.-++.+++.+-+.-....- ........+..++...+.++++++.|+.....-. .| ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344445555555555555555544443321 1123444566777777778888888887764211 11 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCC
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQ----RNLKPAT-----ITYRSLLNGYNRMGNRSEVFVVFEEMLG----KGIEPD 856 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~ 856 (989)
+..|...|.+..++++|.-+..+..+ .++..-. .....+..++...|..-+|.+.-++..+ .|-.|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77788888888888888766655443 1211111 1234455677778888888777766654 444443
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHH----C
Q 001966 857 NF-TYYVMIDAHCKEGNVMEALKLKDLIFDK--RMP---ISAEAYKAIIKALCKREEY-----SEALRLLNEMGE----S 921 (989)
Q Consensus 857 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~----~ 921 (989)
.. ....++++|...|+.+.|..-|+++... +.. -..++...++.++....-. =+|+++-.++++ .
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 32 4556779999999999998888877642 111 0122333333333221111 224444444443 3
Q ss_pred CCcc-CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 922 GFRL-GFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 922 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
+.+. -......++.+|...|.-++-...+.+
T Consensus 325 G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 325 GAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred hhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3331 133456788899888876654444433
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0057 Score=63.02 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc-hhHHHHHhh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS-ISLADIVKG 971 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 971 (989)
..+..++-++.+.+++.+|++..+++++..+. +..+++.-|.+|...|+++.|+..|+++++. .|+. ++-..+...
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 35778899999999999999999999999988 9999999999999999999999999999874 8864 444444444
Q ss_pred hhcCC-ChhhHHHHHhhh
Q 001966 972 ENSGV-DLDESKDLMKQT 988 (989)
Q Consensus 972 ~~~~g-~~~~a~~~~~~~ 988 (989)
-.+.- ..+...+++.+|
T Consensus 335 ~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 33222 233345555554
No 217
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.10 E-value=0.0074 Score=60.43 Aligned_cols=227 Identities=14% Similarity=0.082 Sum_probs=147.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHh
Q 001966 728 CCKEEKLEQALELFRDMLEKGL---ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QVNPN---HDTYTTLINQYCK 799 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 799 (989)
+....+.++|+..+.+.+.+-. ....++-.+..+.+..|++++++..--..+.. ..... ...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788899998888877532 34456777888889999988887654433321 11111 1344455555555
Q ss_pred cCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhc
Q 001966 800 VQNMEKAKQLFLEMQQR-NLKP---ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----FTYYVMIDAHCKE 870 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~ 870 (989)
.-++.+++.+-+.-... |..| -......+..++.-.+.++++++.|+.+.......++ ..+-.|...+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55566666555444432 2223 1234455777788888899999999988873222222 2577788888899
Q ss_pred CCHHHHHHHHHHHHhC----CCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCcc-CHHhHHHHHHH
Q 001966 871 GNVMEALKLKDLIFDK----RMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGES----GFRL-GFASCRTVAND 936 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~----~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~ 936 (989)
.++++|.-+..++.+. +.. .+ ..+...++-++..+|++..|.+.-+++.+. +..+ .......++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999888777654 222 01 123455667788888888888888876543 3221 23445678999
Q ss_pred HHhcCChhHHHHHHHHHH
Q 001966 937 FLREGVMDYAAKVLECMA 954 (989)
Q Consensus 937 ~~~~g~~~~A~~~~~~~~ 954 (989)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999988888773
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.05 E-value=0.35 Score=47.31 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=89.5
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHh----
Q 001966 798 CKVQNMEKAKQLFLEMQQRN--LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG-KGIEPDNF-TYYVMIDAHCK---- 869 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~-~~~~l~~~~~~---- 869 (989)
.+.|++++|.+.|+.+.... -+-...+...++.++.+.+++++|+..+++.+. .+..|+.. .+...+.++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 34555555555555555431 011133444455555555666666666555555 22333322 22221111111
Q ss_pred -cCC---HHHHHHHHHHHHhCCCC----CCH------------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CH
Q 001966 870 -EGN---VMEALKLKDLIFDKRMP----ISA------------EAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GF 927 (989)
Q Consensus 870 -~g~---~~~A~~~~~~~~~~~~~----~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 927 (989)
..+ ..+|..-+++.++.-|. +|. ..-..+++-|.+.|.+..|..-++.+++.-++- ..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 111 23344444444443211 111 112356777899999999999999999886552 14
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.++..+..+|...|-.++|.+.-+-+... .||+.
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 45677888999999999998887666433 46654
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.17 Score=53.15 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 721 YNALLSGCCKEEKLEQALELFRDMLEKGL----ASTLSFNTLIEFLCI---SNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793 (989)
Q Consensus 721 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 793 (989)
...++-+|....+++.-+++.+.+..... .....-...+-++.+ .|+.++|++++..++...-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33455567777777777777777765421 233334445556666 77888888888886655556677777776
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNV 873 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 873 (989)
+..|... | .+.+.. |. ...++|+..|.+.-+ +.|+..+-.+++..+...|..
T Consensus 224 GRIyKD~---------~---~~s~~~-d~-------------~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 224 GRIYKDL---------F---LESNFT-DR-------------ESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHH---------H---HHcCcc-ch-------------HHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCc
Confidence 6655321 1 111111 11 116667777777766 556554433333333334432
Q ss_pred HHHH----HHH----HHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 874 MEAL----KLK----DLIFDKR---MPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 874 ~~A~----~~~----~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
.+.. ++- ..+.++| ...+...+..++.+..-.|++++|.+.+++|....
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2111 111 1111111 22344555566666666677777777777666554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.99 E-value=0.0018 Score=51.89 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCc-cC-HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGES----GFR-LG-FASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++..++.+|...|++++|+..++++++. +++ |+ ..++..+|.+|...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776643 211 11 44567788888888888888888877654
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.4 Score=46.40 Aligned_cols=146 Identities=15% Similarity=0.027 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 803 MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 803 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
.+..+++|++=.. ...+.++..+.-.|.+.-...++++.+++.-.-+......|+..-.+.|+.+.|..+++.
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3555566655432 345677778888899999999999999943222445677788999999999999999996
Q ss_pred HHhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 883 IFDK-----RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 883 ~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
..+. +...+..+....+..+.-++++.+|...+.+....++. ++.+.+.-+-++.-.|+..+|.+..+.|++.
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5532 33434555666667788889999999999999999877 8888899999999999999999999999875
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.011 Score=55.72 Aligned_cols=69 Identities=28% Similarity=0.402 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 001966 347 GDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKS----------------GKMEKAREVLNEIIRMGIEPNSRTYTSLI 410 (989)
Q Consensus 347 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li 410 (989)
|.++=....+..|.+.|+..|+.+|+.|++.+=+. .+.+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 44444455555555555555555555555554331 12234555555555555555555555555
Q ss_pred HHHHh
Q 001966 411 QGYCR 415 (989)
Q Consensus 411 ~~~~~ 415 (989)
+.+.+
T Consensus 146 ~iFG~ 150 (228)
T PF06239_consen 146 NIFGR 150 (228)
T ss_pred HHhcc
Confidence 55543
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.96 E-value=0.033 Score=50.29 Aligned_cols=92 Identities=10% Similarity=-0.057 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+.-+...|++++|..+|+-+.- .+|-+. -+..|+.++-..+++++|+..|..+...++. |+......+.++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 344455678888888888888777 556444 4455667777778888888888888776544 666677788888888
Q ss_pred CCHHHHHHHHHHHHHC
Q 001966 906 EEYSEALRLLNEMGES 921 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~ 921 (989)
|+.++|+..|+.+++.
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8888888888887774
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.025 Score=56.25 Aligned_cols=116 Identities=11% Similarity=-0.034 Sum_probs=53.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHh
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI----TYRSLLNGYNRMGNRS 839 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~ 839 (989)
..|+..+|-..++++++. .+.|...+.---.+|.-.|+.+.-...++++... ..||.. .-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555555555543 2334444444444555555555555555554432 122221 1122333444455555
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
+|.+..++.++ ++|.+. +.......+...|++.++.++..+-
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555555555 444333 3344444445555555555554443
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.93 E-value=0.69 Score=48.46 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEMLNSG-LVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQ-TYSVLI 620 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li 620 (989)
..+|...+....+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+-=+.. .||.. --+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3445556666666666777777777777666 4566667777776555 45566666666554443 23333 334445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 621 NGLSKKLELREALGIFLELLEKGLVPD--VDTYNSLITSFCKICDVDKAFQLYEEMCEK 677 (989)
Q Consensus 621 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 677 (989)
..+...++-+.|..+|+..+++ +..+ ...|..+|+--.+-|++..+..+-+.+.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5556666666676666654433 1111 345555665555666666665555555543
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.93 E-value=0.69 Score=48.44 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHH
Q 001966 682 NTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRG-VPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIE 760 (989)
Q Consensus 682 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 760 (989)
-..+|+.+++...+..-++.|..+|-++.+.+ +.++..++++++.-++ .|+..-|..+|+--+...+.+..-....+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35567778887777777888888888888877 5667778888887665 477788888888887777666665566667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 761 FLCISNKLQEAHQLLDAMLEEQVNPN--HDTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 761 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
.+...++-+.|..+|+..++. +..+ ...|..++..-..-|+...|..+=+++.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 777888888888888866542 1112 35677777777777887777777776666
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.87 E-value=0.072 Score=57.74 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
..+...+..-+.+...+.-|.++|++|-+ ...+++.+.+.++|++|..+.++..+. -..+|.-.++-
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----cccccchHHHH
Confidence 44555555556666677778888877644 234567778888899998888776543 22334444444
Q ss_pred HHccCCHHHHHHHHHH
Q 001966 902 LCKREEYSEALRLLNE 917 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~ 917 (989)
+....+++||.+.|.+
T Consensus 814 LAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 5555555555544433
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.84 E-value=0.0049 Score=65.08 Aligned_cols=101 Identities=16% Similarity=-0.014 Sum_probs=71.0
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA---EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFA 928 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 928 (989)
..|+.. .+++++.+|...|++++|+..|+++++.++. +. .+|+.++.+|..+|+.++|+..++++++.... .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~-~-- 145 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL-K-- 145 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch-h--
Confidence 455444 8889999999999999999999999998765 44 35999999999999999999999999986311 1
Q ss_pred hHHHHHH--HHHhcCChhHHHHHHHHHHhCCC
Q 001966 929 SCRTVAN--DFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 929 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 -f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 -FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred -HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111111 11122233456666666665554
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.83 E-value=0.0025 Score=43.94 Aligned_cols=41 Identities=24% Similarity=0.179 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
.+|..++..|...|++++|+++++++++..|+ |+.++..|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 34556666666666666666666666666666 666665554
No 230
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.81 E-value=0.043 Score=51.11 Aligned_cols=189 Identities=10% Similarity=-0.030 Sum_probs=113.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMG 836 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 836 (989)
+..|-..|-..-|..-|.+.+.. .|+ +..||-+.-.+...|+++.|.+.|+...+. .|. ..+...-+-++.--|
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecC
Confidence 34567778888888888877763 554 577888888888999999999999999884 443 334433444455678
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHH
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEYSEALRLL 915 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~ 915 (989)
++.-|.+-+.+.-+ -+|++.--...+..-...-++.+|..-+.+=.+ ..+.+-|.+.+-. |.-+=..+.+.+-.
T Consensus 148 R~~LAq~d~~~fYQ--~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~ 222 (297)
T COG4785 148 RYKLAQDDLLAFYQ--DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERL 222 (297)
T ss_pred chHhhHHHHHHHHh--cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 99999887777766 455444221112222344567777654433222 1244444433322 22111222222222
Q ss_pred HHHHHCCCc---cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 916 NEMGESGFR---LGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 916 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
..-.+.+.. .=..+|..|+.-|...|+.++|..+|+.++..
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 221111100 01457889999999999999999999988754
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.73 E-value=0.22 Score=52.42 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=101.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRN---LKPATITYRSLLNGYNR---MGNRSEVFVVFEEMLGKGIEPDNFTYYVMID 865 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 865 (989)
.++-.|....+++.-+++++.+...- +......-..++-++.+ .|+.++|+.++..++...-.++..++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777778888888888777521 11122233455566666 7888888888888666545566667666653
Q ss_pred HH----Hh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH----HHHHHH----HHHHHCC---Ccc
Q 001966 866 AH----CK-----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS----EALRLL----NEMGESG---FRL 925 (989)
Q Consensus 866 ~~----~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~---~~~ 925 (989)
.| .. ....++|+..|.+..+.. |+...--.++..+...|... +..++. ..+.+++ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 33 22 223789999999998765 34333333444455555422 222322 1111222 234
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 926 GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 926 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+.+.+..++.+..-.|++++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 6777788999999999999999999999764
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.014 Score=61.78 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.+...++.++.+|.+.|++++|+..|++.++ ++|+.. +|++++.+|...|++++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567999999999999999999999999999 899865 4899999999999999999999999986
No 233
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.69 E-value=0.029 Score=52.94 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 001966 366 IDLVIYNTLLKGFCK-----SGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCR 415 (989)
Q Consensus 366 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 415 (989)
.+-.+|..++..|.+ .|.++=....++.|.+-|+..|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 467777777777775 36677778888899999999999999999998754
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.58 E-value=1.6 Score=47.97 Aligned_cols=187 Identities=11% Similarity=-0.001 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
+..+|...++--...|+.+...-+|+...-.--.-...|...+.-....|+.+-|...+....+-..+..+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777787788888888888888876543334445566666666668888887777666544333222222212222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHH---HHHHHHHhCCCCCCHH--HHHHHH-HHHHh
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGNRSEVF---VVFEEMLGKGIEPDNF--TYYVMI-DAHCK 869 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~~~--~~~~l~-~~~~~ 869 (989)
.-..|+++.|..+++.+.+. . |+.+ .-..-+....+.|+.+.+. +++....+.-..+... .+...+ -.+.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 33467888888888888775 3 5533 3333445556777877777 4444433311122111 111122 22233
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
.++.+.|..++.++.+..+. +...|..+++....++
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 57788888888888876543 7777777777766655
No 235
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=1.8 Score=48.46 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 581 YTSIVDGYCKEGNIAEAISKFRCMLAR 607 (989)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (989)
|..+.++|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455666777778888888888888764
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.55 E-value=0.097 Score=58.37 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQRN-LKPAT-----ITYRSLLNGYN----RMGNRSEVFVVFEEMLGKGIEPDNFTY 860 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~ 860 (989)
..++....-.|+-+.+++++.+..+.+ +.-.. ..|...+..+. .....+.|.++++.+.+ ..|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 344444445566666666655554421 11110 12222222222 24567778888888887 67877755
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH-HHHHH
Q 001966 861 YVM-IDAHCKEGNVMEALKLKDLIFDKR---MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC-RTVAN 935 (989)
Q Consensus 861 ~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 935 (989)
... +..+...|+.++|++.++++.... .+.....+.-+++++.-++++++|...+.++.+.... +...| +..|.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHH
Confidence 543 477777888888888888766421 1122334566777888888888888888888876544 33333 45666
Q ss_pred HHHhcCCh-------hHHHHHHHHHHh
Q 001966 936 DFLREGVM-------DYAAKVLECMAS 955 (989)
Q Consensus 936 ~~~~~g~~-------~~A~~~~~~~~~ 955 (989)
++...|+. ++|.+++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77777877 777777777653
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.047 Score=53.67 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=70.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHc
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--ISAEAYKAIIKALCK 904 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 904 (989)
.+.+.|++.+|...|...++ -.|+.. .++-|+.++...|++++|...|..+.+.-++ .-++++..|+.+..+
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 35567788888888888887 445432 5666788888888888888888888875322 245788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCc
Q 001966 905 REEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~ 924 (989)
.|+.++|..+|+++++.-|.
T Consensus 228 l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCC
Confidence 89999999999888888776
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.22 Score=47.59 Aligned_cols=86 Identities=17% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CccCHHhHHHH
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFD----KRMPIS-AEAYKAIIKALCKREEYSEALRLLNEMGESG----FRLGFASCRTV 933 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l 933 (989)
....+.+..++++|-..+.+-.. ...-++ ...+...+-.+.-..++..|.+.++.--+.+ ++ +..+...|
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se-d~r~lenL 234 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE-DSRSLENL 234 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH-HHHHHHHH
Confidence 34555566666665555444321 111111 1223344444555556666666666543332 11 34444445
Q ss_pred HHHHHhcCChhHHHHHH
Q 001966 934 ANDFLREGVMDYAAKVL 950 (989)
Q Consensus 934 ~~~~~~~g~~~~A~~~~ 950 (989)
..+| ..|+.+++..++
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 4443 345555554444
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.49 E-value=0.19 Score=54.73 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=13.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 001966 865 DAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~ 885 (989)
.++.+.|+..||.++++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 344556777777777777653
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.48 E-value=0.099 Score=48.03 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCcccchh
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA-----SFGWVSNSIS 964 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 964 (989)
+...++..+...|++++|+..+++++...|- +...|..+..+|...|+..+|.+.|+++. +.|+.|.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666677777888888888887777766 77777778888888888888877777664 3566776443
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.45 E-value=0.87 Score=44.62 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH---hc
Q 001966 728 CCKEEKLEQALELFRDMLEKGLAS---TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ-VNPNHDTYTTLINQYC---KV 800 (989)
Q Consensus 728 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~---~~ 800 (989)
-.+.|++++|.+.|+.+....|.+ ..+...++.++.+.+++++|+..+++.+... ..|+. -|-..+.+++ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 346677777777777777766622 3455556667777777888877777777542 22332 2322233222 11
Q ss_pred ----CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcC
Q 001966 801 ----QN---MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEG 871 (989)
Q Consensus 801 ----g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g 871 (989)
.+ ..+|+.-|+++++. -||.. -..+|..-...+.. .- .=..+++-|.+.|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d------~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLND------ALAGHEMAIARYYLKRG 181 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHH------HHHHHHHHHHHHHHHhc
Confidence 11 22344444444442 23321 01111111111110 00 1112346677788
Q ss_pred CHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 872 NVMEALKLKDLIFDKRM--PISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+..|..-++++++.-+ ....+++..+..+|.+.|-.++|.+.-.-+...-|+
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 88888888888877622 223456667777788888888887776655444433
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.047 Score=46.28 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=67.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHc
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK-RMPISA---EAYKAIIKALCK 904 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~ 904 (989)
.++...|+.+.|++.|.+.+. +.|... .|++-..++.-+|+.++|+.-++++++. |.. .. .+|..-+..|..
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 445677888888888888887 777544 7777888888888888888888888876 333 22 345555666778
Q ss_pred cCCHHHHHHHHHHHHHCCCc
Q 001966 905 REEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~ 924 (989)
.|+.+.|..-|+.+.+.+.+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 88888888888888877743
No 243
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.44 E-value=0.01 Score=47.40 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=12.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMG 919 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~ 919 (989)
+..++.++...|++++|++++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555554443
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.39 E-value=3.3 Score=49.38 Aligned_cols=189 Identities=15% Similarity=0.185 Sum_probs=106.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 772 (989)
-..+.|+.+-+-+++++.+. +++..-| .|+.| .+++++|+..+.++- ...+....+..-+.|.+.+|+
T Consensus 861 q~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~------~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECG------ETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HHhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcC------ccccHHHHHHHHhcccchhhh
Confidence 34456666666666666632 2222222 12322 356677776666553 223333444455667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
.++..-.+ .-...|.+.++.+...+++++|.-+|+..=+ ....+.+|..+|+|++|..+..++..
T Consensus 929 ~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~-- 993 (1265)
T KOG1920|consen 929 ALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE-- 993 (1265)
T ss_pred heeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--
Confidence 66532111 1123455555566667777777777765422 22345567778888888888777643
Q ss_pred CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 853 IEPDNF---TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 853 ~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
+... +-..|+.-+..++++-+|-++..+.... + ...+..|++.-.+++|+.+..+.
T Consensus 994 --~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~---~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 994 --GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----P---EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred --CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----H---HHHHHHHhhHhHHHHHHHHHHhc
Confidence 2222 2255667777788888887777776532 1 12334566666777777776553
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.38 E-value=0.084 Score=58.84 Aligned_cols=173 Identities=16% Similarity=0.018 Sum_probs=116.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHH-----HHHHHHHHH----hcCCHHHHHH
Q 001966 809 LFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNFT-----YYVMIDAHC----KEGNVMEALK 878 (989)
Q Consensus 809 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~-----~~~l~~~~~----~~g~~~~A~~ 878 (989)
+|+-+... +||. ...++....-.|+-+.+++.+.+..+. ++.-...+ |+..+..++ ...+.+.|.+
T Consensus 179 ~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 44444442 3444 345566666689999999999998772 23222222 222232222 3556889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 879 LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG---FRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+++.+.+.-|. ..-....-++.+...|+.++|++.++++.... ++.+...+.-+++++.-.++|++|...+.++.+
T Consensus 255 lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 255 LLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 99999986433 33444456888999999999999999877432 223455678999999999999999999999976
Q ss_pred CCCcccchhH--HHHHhhhhcCCCh-------hhHHHHHhhh
Q 001966 956 FGWVSNSISL--ADIVKGENSGVDL-------DESKDLMKQT 988 (989)
Q Consensus 956 ~~~~p~~~~~--~~l~~~~~~~g~~-------~~a~~~~~~~ 988 (989)
. ..-...+ +..+-.+...|+. ++|.++++++
T Consensus 334 ~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 334 E--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred c--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 3 2223333 4445556777877 8888888775
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.37 E-value=0.064 Score=47.36 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc---
Q 001966 888 MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS--- 962 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--- 962 (989)
+...+..+..-+....+.|++++|++.|+.+...-|-. ...+...|+.+|++.|++++|...+++.++. .|+.
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~v 83 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNV 83 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCc
Confidence 34456677778888999999999999999998876552 3667899999999999999999999999875 6752
Q ss_pred -hhHHHHHhhhhcCC
Q 001966 963 -ISLADIVKGENSGV 976 (989)
Q Consensus 963 -~~~~~l~~~~~~~g 976 (989)
-.++..+-....+.
T Consensus 84 dYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQD 98 (142)
T ss_pred cHHHHHHHHHHHHHh
Confidence 34455554444443
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.35 E-value=0.0041 Score=39.75 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHCCCccCHHhHHHHHHHHHhcCChhHHH
Q 001966 915 LNEMGESGFRLGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
|+++++..|+ ++.+|..||.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777777 7777777777777777777775
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.077 Score=48.83 Aligned_cols=90 Identities=21% Similarity=0.115 Sum_probs=55.7
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
+.+.|++++|..-|..+++ +.|... .|..-+.++.+.+.++.|++-..++++.++. ...++..-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 4556666777766666666 444221 2334445666667777777777777766654 444555556666667
Q ss_pred CCHHHHHHHHHHHHHCCCc
Q 001966 906 EEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~ 924 (989)
.++++|+.-|+++++..|.
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 7777777777777766655
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.28 Score=46.92 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred ChHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 99 DLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 99 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
....|..-+..+-.+++|++|...|.++++
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 567788888888899999999999999885
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.29 E-value=1.9 Score=49.59 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 001966 664 VDKAFQLYEEMCEKGVEPNTLTYNVLIDG-----FCKAGDLTEPFQLFDEMTK-------RGVPLDGSVYNALLSGCCKE 731 (989)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 731 (989)
...|.++++...+.| +...-..+..+ +....+.+.|+.+|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777766664 22222222222 2344567777777776655 33 223444455555542
Q ss_pred C-----CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 001966 732 E-----KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS---NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC----K 799 (989)
Q Consensus 732 g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 799 (989)
. +.+.|+.++....+.+.++.... ++..+... .+..+|.++|......|.. ..+..+..+|. -
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 2 44556666666666554443322 22222222 2345666666666555422 12222222221 1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
..+.+.|..++++..+.| .|...--...+..+.. +.++.+...+..+.+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 224555566666555554 2222211222222222 555555555555544
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.29 Score=48.64 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=15.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 926 GFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 926 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|...-..|+..|...|+.++|.+.+-.+++
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555444443
No 252
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.19 E-value=3.7 Score=48.04 Aligned_cols=189 Identities=15% Similarity=0.024 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCCHhHHHHHHH--------HHHhCCCCCCHHHHH
Q 001966 798 CKVQNMEKAKQLFLEMQQRN-LKPA-------TITYRSLLNGYNRMGNRSEVFVVFE--------EMLGKGIEPDNFTYY 861 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~g~~p~~~~~~ 861 (989)
+-.|++..|...++.+.+.. -.|+ +..+...+-.+...|+.+.|...|. .....+..++...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 56789999999999887631 1121 2233334444567899999999998 333433333333332
Q ss_pred H--HHHHHHhcCC--HHH--HHHHHHHHHhC---CCCCCHHHHHHH-HHHHHcc--CCHHHHHHHHHHHHHCC-Ccc-C-
Q 001966 862 V--MIDAHCKEGN--VME--ALKLKDLIFDK---RMPISAEAYKAI-IKALCKR--EEYSEALRLLNEMGESG-FRL-G- 926 (989)
Q Consensus 862 ~--l~~~~~~~g~--~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~~-~~~-~- 926 (989)
. ++..+...+. .++ +.++++.+... .+..+...+..+ ..++... -...++...+.+.++.. -.. +
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 3334443333 222 56666655432 222233344444 3333211 12235555555544332 010 1
Q ss_pred ---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccc--chhH-----HHHHhhhhcCCChhhHHHHHhh
Q 001966 927 ---FASCRTVANDFLREGVMDYAAKVLECMASFGW-VSN--SISL-----ADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 927 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
..+++.++..+. .|+..+..+.........- .|| ...| ..+.+.+...|+.++|.....+
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~ 602 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQ 602 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 233455666666 7887775555444332111 244 2334 2444457788999999887654
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.19 Score=46.52 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
++..+...|++++|+..++..+....+.+ ..+-..|++.....|++++|++.+....+.+. .+.....-|+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 35778888999999998888875422111 22344677888889999999998887554432 344567788899999
Q ss_pred CChhHHHHHHHHHHhCC
Q 001966 941 GVMDYAAKVLECMASFG 957 (989)
Q Consensus 941 g~~~~A~~~~~~~~~~~ 957 (989)
|+.++|+..|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999888764
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.27 Score=45.10 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
.++..+...|++++|+...+.++..+|- +...|..++.+|...|+..+|++.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444555556666666666666655543 5556666666666666666666665554
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=3 Score=47.72 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=98.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 303 NLIYGFSAAKRLGDVRLVLSELIGKGLKLD--TVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCK 380 (989)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 380 (989)
.-+..+++..-++-|..+-+. .+..++ .......++-+.+.|++++|...+-+-... ++| ..+|.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 344444555555555444332 122222 122333445566778888887777665543 222 234455555
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 381 SGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAI 460 (989)
Q Consensus 381 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (989)
..++.+-..+++.+.+.|+ .+...-+.|+++|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.++|.-+
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6666666777777777774 455556778888888888877666665544 2221 11233455566666666666655
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 461 LGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERM 499 (989)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (989)
-.+... +......++. ..+++++|.+.+..+
T Consensus 486 A~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 544332 2333333333 467788888887765
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.21 Score=50.00 Aligned_cols=165 Identities=11% Similarity=-0.042 Sum_probs=129.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcC
Q 001966 796 QYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV----MIDAHCKEG 871 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~----l~~~~~~~g 871 (989)
.....|+..+|...++++.+. .|.|...+.---.+|.-.|+.+.-...+++++.+ .+||.+.|.. +.-++.+.|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 345678899999999999884 5777778888888999999999999999998873 4677665444 346778899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---cCHHhHHHHHHHHHhcCChhHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR---LGFASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
-+++|.+..+++.+.+.. |..+-..++.++...|+..++.++..+-...=.. .-.+-|.+.+-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999999998855 8888889999999999999999998874322111 113446778888889999999999
Q ss_pred HHHHHHhCCCcccch
Q 001966 949 VLECMASFGWVSNSI 963 (989)
Q Consensus 949 ~~~~~~~~~~~p~~~ 963 (989)
+|+.=+-..+..|+.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 998754444556543
No 257
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.054 Score=49.80 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=80.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPIS----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
++-+...|++++|..-|..+++.-++-. ...|..-+.++.+.++++.|+.-..++++.+|. ...++...+.+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3567789999999999999998744322 235667788899999999999999999999987 67777888999999
Q ss_pred cCChhHHHHHHHHHHhCCCccc
Q 001966 940 EGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..++++|++-|+++++. .|.
T Consensus 181 ~ek~eealeDyKki~E~--dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHh--Ccc
Confidence 99999999999999875 563
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.57 Score=46.70 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
......|++.+|..+|+......+.+..+...++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34456788888888888888887766777778888888888888888888776533111111222223344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
...+-.+.-. -+.|...-..++..+...|+.++|.+.+-.++.
T Consensus 222 ~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444334333 123455556666666666666666666666655
No 259
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.00 E-value=2.5 Score=44.29 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=64.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001966 476 YTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCM 555 (989)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 555 (989)
.+.-+.-+...|+...|.++-.+.. -||...|...+.+++..+++++-..+... +-++.-|..++..+.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555556677776666655553 25666777777777777777766654322 1134667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 001966 556 AGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISK 600 (989)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 600 (989)
.|...+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777777666551 124456667777777777654
No 260
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.84 E-value=3.9 Score=45.20 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=124.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 830 (989)
+...|..-++.-...|+.+.+.-++++.... +.--...|-..+......|+.+-|..++....+--.+..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777788899999999999988742 112335677777777777998888887777666433334444333344
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCC--CHHHHHHHHHH-HH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEAL---KLKDLIFDKRMPI--SAEAYKAIIKA-LC 903 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~--~~~~~~~l~~~-~~ 903 (989)
.....|+++.|..+++...+. .|... .-..-+....+.|+.+.+. +++.........+ ....+...++. +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 455678999999999999883 37655 3333456677888888888 5554444321111 12222233332 34
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
-.++.+.|..++.++.+..|+ +-..|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 568999999999999998876 7777777777766665
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.78 E-value=0.76 Score=43.21 Aligned_cols=186 Identities=16% Similarity=0.050 Sum_probs=120.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 726 SGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 726 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
..|-..|-+.-|.--|.+.+...|.-+.+++.|+-.+...|+++.|.+.|+...+....-+-...|.-|..| --|++.-
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~L 151 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKL 151 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHh
Confidence 445667888889999999999999888999999999999999999999999999865443444445444433 5689999
Q ss_pred HHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHH
Q 001966 806 AKQLFLEMQQRNLKPAT--ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMI-DAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~ 882 (989)
|.+=|.+.-+.+ +.|+ ..|..+.. ..-+..+|..-+.+--+ ..|..-|...+ ..+. |+..+ ..++++
T Consensus 152 Aq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL--gkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL--GKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH--hhccH-HHHHHH
Confidence 988777766542 3333 23433332 23467777655444332 22334443322 2222 22211 123333
Q ss_pred HHhCCCC------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 883 IFDKRMP------ISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 883 ~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+.+.... .=.++|..++.-+...|+.++|..+|+-++..+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3332111 113578889999999999999999999887654
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=1.2 Score=40.32 Aligned_cols=128 Identities=10% Similarity=0.075 Sum_probs=67.6
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCCH
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE---AYKAIIKALCKREEY 908 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 908 (989)
...|+.++|+..|..+.+.|...=.. ............|+..+|...|+++-...+.|... +...-+..+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555666666666665532211111 12223345556677777777777666543333322 222233445666777
Q ss_pred HHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 001966 909 SEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 960 (989)
++.....+-+...+...-..+...|+-+-++.|++..|..+|+.+.+..-.|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7666666655433322234445566777777777777777777665433333
No 263
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.85 Score=43.51 Aligned_cols=203 Identities=14% Similarity=0.098 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAML- 779 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 779 (989)
++.++..+..++..+..... .+.-.+.+++|.++|.+.-.. |--..+++.|=..|.+.-
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aan~--------------yklaK~w~~AG~aflkaA~ 62 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAANM--------------YKLAKNWSAAGDAFLKAAD 62 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHH
Confidence 45666666666532222221 334456788888888776432 111122222222222221
Q ss_pred ---HCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHH
Q 001966 780 ---EEQVNPNH-DTYTTLINQYCKVQNMEKAKQLFLEMQQR----N-LKPATITYRSLLNGYNRM-GNRSEVFVVFEEML 849 (989)
Q Consensus 780 ---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 849 (989)
+.|...|. .+|.-..++| +.+++++|.+.++..++- | +..-......++..|... .+++.|+..|++.-
T Consensus 63 ~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 63 LHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 11222222 2233333333 444666666666554431 0 111112233455555443 56777777777776
Q ss_pred h--CCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------HHHHHHHccCCHHHHHHHHHHH
Q 001966 850 G--KGIEPDNF---TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYK------AIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 850 ~--~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
+ .|-..+.. .+.-.+..-...+++.+|+++|+++.......+.--|. .-+-++.-.++.-.+...+++-
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 6 22222211 22223344445567777777777776654432222121 1122222235666666666666
Q ss_pred HHCCCc
Q 001966 919 GESGFR 924 (989)
Q Consensus 919 ~~~~~~ 924 (989)
.+..|.
T Consensus 222 ~~~dP~ 227 (288)
T KOG1586|consen 222 QELDPA 227 (288)
T ss_pred HhcCCc
Confidence 666554
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.72 E-value=0.027 Score=38.78 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
++..++..|.+.|++++|++.++++++..|. |..+|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4555666667777777777777777766655 666666554
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=6 Score=45.42 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCC--HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 157 VFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPS--LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
....-+....+..+++-|+.+...- +..++ ........+-|.+.|++++|...|-+.+. ...|. .+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~----~le~s-----~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG----FLEPS-----EV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc----cCChH-----HH
Confidence 3455677778888888888876543 33333 12233455667888999999988888775 43332 34
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRL 314 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 314 (989)
|.-|....+..+-..+++.+.+.|. .+..--..|+.+|.+.++.++-.++.+.-. .|.. ..-.-..+..+.+.+-+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5556666677777788888888877 556666778889999888888777666544 3321 11233455556666666
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001966 315 GDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDEL 359 (989)
Q Consensus 315 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 359 (989)
++|.-+-.+... +.+....++. ..|++++|.+.+..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 666665554432 3444444443 457788888877765
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.49 E-value=0.73 Score=49.38 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=74.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQL 809 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 809 (989)
+..+.+.-++.-+++++.++.-..+|..|+. .......+|.+++++.++.|-. .+..- ......|. .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~------~ 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH------F 246 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc------h
Confidence 3445556666666666665544444433322 2234467777777776643210 01000 00001111 1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 810 FLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 810 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
++........|-..+-..++.++.+.|+.+||++.+++|++ ..|. .. ...+|+.++...+.+.++..++.+--+.
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111212223333445677777778888888888888876 2332 22 5566777888888888888887775443
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=1 Score=41.94 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHH
Q 001966 805 KAKQLFLEMQQRNLKPATI---TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY-----YVMIDAHCKEGNVMEA 876 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~g~~~~A 876 (989)
+.....+++...+ +-+.. +-..++..+...|++++|...++..+. .|.+..+ ..|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n-~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQAN-GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665532 12211 223455678899999999999999886 3333333 3356888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.++...+.+ ..+.....-++++...|+-++|+.-|+++++..+.
T Consensus 146 L~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998876543 23444556789999999999999999999998744
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.43 E-value=0.47 Score=50.78 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.+-..++.++-+.|+.+||++.++++++..|.. +..+...|+.++...+.+.++..++.+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334456666777777777777777777655442 3446677777777777777777777765
No 269
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.41 E-value=7.5 Score=45.55 Aligned_cols=192 Identities=10% Similarity=0.076 Sum_probs=116.0
Q ss_pred HHHHHHhhhhcCCCC-CChHhHHHHHHHHh-cCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHH
Q 001966 83 LSFFHWSERQMGTCQ-NDLKVLSLLFVVLC-NCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNM 160 (989)
Q Consensus 83 l~ff~~~~~~~~~~~-~~~~~~~~l~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (989)
+.-+.-+.++...+| ....++..++.+|. ...++++|+..+.+.+..... ..+.+. ....-..
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~-------------k~~~~~l 105 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDL-------------KFRCQFL 105 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHH-------------HHHHHHH
Confidence 333333443444433 25678899999998 888999999999998762211 111110 0123346
Q ss_pred HHHHHHHcCChHHHHHHHHhhcCC----CCCCCHHhHHHH-HHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHH
Q 001966 161 LIDGYRKIGLLDEAVDLFLCDTGC----EFVPSLFSCNAL-LRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVI 235 (989)
Q Consensus 161 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (989)
+++.|.+.+... |....+..++. +..+-...|..+ +..+...+++..|.+.++.+..+......+-+.++-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 678888777766 88887776432 222223334333 222333479999999999988732112334455555555
Q ss_pred HHH--HhcCChhHHHHHHHHHhhCC---------CCCChhhHHHHHHHHH--ccCChhHHHHHHHHHH
Q 001966 236 DAY--FKVRNAEEGKRVFSEMGEKG---------CRPNVATYNVVIGGLC--RVGFVDEAVELKNSMV 290 (989)
Q Consensus 236 ~~~--~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 290 (989)
.+. .+.+..+++.+..+++.... ..|...+|..+++.+| ..|+++.+...+.++.
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544 45677888888888774321 2356778888887665 5778777776655543
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.40 E-value=3.8 Score=44.36 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS------- 891 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------- 891 (989)
..+|...+..+.+.|+++.|...+.++...+..+ .......-++.+...|+.++|+..++..+......+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 4577888888888888888888888887632111 223444456777788888888888877776211100
Q ss_pred --------------------------HHHHHHHHHHHHcc------CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 892 --------------------------AEAYKAIIKALCKR------EEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 892 --------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
..++..++.-.... ++.+++.+.|.++.+..+. ...+|..++..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFNDK 304 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHHHH
Confidence 11233333333334 6677777777777777665 55666666665443
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.40 E-value=3.9 Score=42.27 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 720 VYNALLSGCCKEEKL---EQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE 781 (989)
Q Consensus 720 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 781 (989)
++..++.+|...+.. ++|..+++.+....+..+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555554443 34444555554444433444444445555556666666666666643
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.33 E-value=0.017 Score=36.92 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
|+++++.+|. +..+|..++..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555 6666666666666666666664
No 273
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.16 E-value=0.1 Score=47.71 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
++|+.-|++++..+|. ...++.+++.+|...
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Confidence 3444444444444433 445555666665444
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=2.5 Score=38.37 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHH
Q 001966 730 KEEKLEQALELFRDMLEKGL--ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHD---TYTTLINQYCKVQNME 804 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 804 (989)
+.+..++|+.-|..+.+.|. -...+.........+.|+...|...|+++-.....|... .-..-.-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34445555555555555444 222233334444555566666666666655433333221 0111112234556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 001966 805 KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN 857 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 857 (989)
+.....+-+...+-+.-...-..|..+-.+.|++.+|...|.++.+....|.+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 65555555544332223334455556666666666666666666654344443
No 275
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.70 E-value=11 Score=43.55 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH
Q 001966 594 IAEAISKFRCMLARGILPEVQTYSVLIN----G-LSKKLELREALGIFLELLE 641 (989)
Q Consensus 594 ~~~A~~~~~~~~~~~~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~~~~ 641 (989)
...|.+.++...+.|. ...-..+.. + +....+.+.|+.+|..+.+
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4556666666666542 222222211 2 3344566666666666554
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.63 E-value=7.3 Score=42.13 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--------
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP---ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-------- 856 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------- 856 (989)
.+|..++..+.+.|+++-|...+.++...+..+ .+.....-+..+...|+..+|+..++..++.....+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 456666666666666666666666665532111 223333444455556666666666665555101100
Q ss_pred ------------------H-------HHHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 857 ------------------N-------FTYYVMIDAHCKE------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 857 ------------------~-------~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
. ..+..++.-.... +..+++.+.|+++.+..+. ...+|..++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFND 303 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHHH
Confidence 0 1233333333344 7788889999999887654 5566776665543
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.59 E-value=6.5 Score=40.63 Aligned_cols=126 Identities=17% Similarity=0.110 Sum_probs=65.5
Q ss_pred HHcCChHHHHHHHHhhcCCC--CCCC-----HHhHHHHHHHHHcCC-ChHHHHHHHHHHHhcc----CCC-CCcC-----
Q 001966 166 RKIGLLDEAVDLFLCDTGCE--FVPS-----LFSCNALLRDLLKGK-KMELFWKVWAKMNKMN----AGG-FEFD----- 227 (989)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~--~~~~-----~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~----~~~-~~~~----- 227 (989)
.+.|+++.|..+|.++.... ..|+ ...|..+...+...+ +++.|..+++++.++- ... ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788899999888876532 2232 123444555566666 8888888888877631 101 2222
Q ss_pred HHHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC
Q 001966 228 VYSYTTVIDAYFKVRNAE---EGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEK 292 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 292 (989)
..++..++.+|...+..+ +|..+++.+..... .....+-.-+..+-+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 224455555555554433 23444444433211 11233333344444455555555555555543
No 278
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.58 E-value=7 Score=40.92 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKE-----G--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----R 905 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 905 (989)
+..+|..+|+++.+.|..+-..+...+...+... - +...|...+.++...+ +......++..|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5666666666666655333222333344333332 1 2236777777777665 55566666655533 3
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCCcc
Q 001966 906 EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG---------------VMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~p 960 (989)
.+.++|...|.++.+.+ +......++ .++..| +...|...+...-..+...
T Consensus 205 ~d~~~A~~wy~~Aa~~g---~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG---DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 47788888888888777 356666666 666555 6677777777776655444
No 279
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.56 E-value=7.1 Score=40.95 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=65.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL 768 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 768 (989)
-+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++-..+... + .++..|..++..|.+.|+.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K--KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--CCCCChHHHHHHHHHCCCH
Confidence 3444556677777666655543 35677777777777777777766654332 1 2345667777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
.+|..++.++ + +..-+..|.+.|++.+|.+.--
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 7777776652 1 1344566777777777766533
No 280
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.52 E-value=0.47 Score=41.64 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=21.9
Q ss_pred CcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 001966 330 KLDTVAYYALIDGFVKQGDVEEAFRVKDELVAS-GNQIDLVIYNTLLK 376 (989)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~ 376 (989)
.|+..+..+++.+|+..|++..|.++.+.+.+. +++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555555555555555555555544443 33333344444443
No 281
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.40 E-value=8.9 Score=41.41 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=72.7
Q ss_pred CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHCCCccCHHh
Q 001966 853 IEPDNFTYY-VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK--REEYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 853 ~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
..|+..++. .+.+.+.+.|-+++|.+.|..+... |+|+...+..++..-.. .-+...+..+|+.|+..-.. |+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~-d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA-DSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC-ChHH
Confidence 445555443 3567777888899999999888876 45688888877765322 23488888888888766544 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 930 CRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|......-...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777776788888888888877764
No 282
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.39 E-value=2 Score=38.91 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 756 NTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM 835 (989)
Q Consensus 756 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 835 (989)
..++..+...+.......+++.+...+. .+....+.++..|++.+ .++.++.++. ..+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555556666666666666665542 45556666666666542 3344444432 11222233455555556
Q ss_pred CCHhHHHHHHHHH
Q 001966 836 GNRSEVFVVFEEM 848 (989)
Q Consensus 836 g~~~~A~~~~~~~ 848 (989)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666666554
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.36 E-value=0.18 Score=50.54 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEP-DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
-++-|.++|++++|+..|...+. ..| +..++.+-+.+|.+...+..|..-.+.++..+-. -..+|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHh
Confidence 34556777777777777777766 666 4446666667777777777777766666655322 3445666666666667
Q ss_pred CHHHHHHHHHHHHHCCCc
Q 001966 907 EYSEALRLLNEMGESGFR 924 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~ 924 (989)
+..+|.+-++.++...|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 777777777777776655
No 284
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=12 Score=42.61 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK 869 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 869 (989)
.+--+..+...|+..+|.++-.+.. -||-..|-.-+.++...+++++-.++.+.... ...|.-...+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh
Confidence 3344445566788888887766654 46666777777888888888887777665432 2345556677888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
.|+.+||.+++-+.-. .. -.+.+|.+.|++.+|.+..-+
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 8888888888876532 11 456778888888888887754
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.24 E-value=0.1 Score=33.26 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=12.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|..++.++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34444444444444444444444444443
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.21 E-value=4.8 Score=42.17 Aligned_cols=164 Identities=12% Similarity=-0.030 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN----RMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EG 871 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g 871 (989)
.+.+..|...+......+. + .....++..|. ...+..+|..+|+.+.+.| .......|+..+.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~-~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD-A--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC-h--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 4455555555555554221 1 22222333322 2345788888888776644 23344445555554 34
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh----c
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE-------EYSEALRLLNEMGESGFRLGFASCRTVANDFLR----E 940 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 940 (989)
+..+|.+.|+++.+.|..+.......++..+..-+ +...|...+.++.+.+ ++.+...|+..|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 89999999999999875422233566666665531 3448999999999887 78888899988765 3
Q ss_pred CChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCC
Q 001966 941 GVMDYAAKVLECMASFGWVSNSISLADIVKGENSGV 976 (989)
Q Consensus 941 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 976 (989)
.+.++|..+|+++-+.|- ....+.+. .+...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 478999999999987764 55555565 444444
No 287
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.57 Score=44.84 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=79.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYY-VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY 908 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 908 (989)
..|....+++.|+..|.+.+. ++|...+|. .-+.++.+..+++.+..--.++++..+. .......++..+.....+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccc
Confidence 345666678888888888887 788876544 4567777788888888888777776433 445666777778888888
Q ss_pred HHHHHHHHHHHHC----CCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 909 SEALRLLNEMGES----GFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 909 ~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
++|+..+.++... .+.+...+...|..+-...=...++.++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888887432 23333445555555444444444555555443
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.15 E-value=15 Score=42.96 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=95.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 001966 761 FLCISNKLQEAHQLLDAMLEEQVNPNH-------DTYTTLIN-QYCKVQNMEKAKQLFLEMQQR----NLKPATITYRSL 828 (989)
Q Consensus 761 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l 828 (989)
......++++|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344566777777777766543112111 12333322 223467777777776666553 112234455666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH---HHHHH--HHHHHhcCC--HHHHHHHHHHHHhCC--CC----CCHHHH
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNF---TYYVM--IDAHCKEGN--VMEALKLKDLIFDKR--MP----ISAEAY 895 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l--~~~~~~~g~--~~~A~~~~~~~~~~~--~~----~~~~~~ 895 (989)
+.+..-.|++++|..+.++..+..-.-+.. .|..+ ...+..+|+ +.+.+..+....+.. -. +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 666777777777777766655511111222 12111 245556663 333333333332220 01 111233
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHCCCccCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 001966 896 KAIIKALCK-REEYSEALRLLNEMGESGFRLGFA--SCRTVANDFLREGVMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 896 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 960 (989)
..+.+++.+ .+...+|..-++-.....+.+... .+..|+.++...|+.++|...+.++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 334444433 223333333333333333332222 22367777888888888877777776543333
No 289
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.12 E-value=0.62 Score=40.92 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=26.0
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHH
Q 001966 434 LVPSVFTYGVIIDGLCHCGDLRQINAILGEMITR-GLKPNAIIYTNLVS 481 (989)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~ 481 (989)
..|+..+..+++.+|+..|++..|.++.+...+. +++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455555555555555555666665555555443 44444455555543
No 290
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.98 E-value=3.6 Score=35.54 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001966 375 LKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKN 433 (989)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (989)
+..+.+.|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444555555555555544322 4444444555555555555555555555555544
No 291
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.94 E-value=16 Score=42.67 Aligned_cols=317 Identities=11% Similarity=-0.002 Sum_probs=161.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 001966 587 GYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDK 666 (989)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 666 (989)
...+.|++..+..+...+..... .....|-.+...+ .....++...++.+-. +.+.....-......+.+.+++..
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHH
Confidence 44567888888777776643211 1223333333221 1223444444333311 112122222333444556667766
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHH
Q 001966 667 AFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLE--QALELFRDM 744 (989)
Q Consensus 667 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 744 (989)
....+. . .+.+...-+.+..+....|+.++|......+=..| ...+.....+...+.+.|... ...+=+..+
T Consensus 118 ~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 555221 1 23455555667777888888887877777665554 334566777777777666543 333333333
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLE---------EQVNPNHDTYTTLINQY--CKVQNMEKAKQLFLEM 813 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 813 (989)
...+. ......+...+. .......+.+..+.. ....|+...-..++-++ ....+.+.|..++...
T Consensus 192 l~~~~--~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~ 267 (644)
T PRK11619 192 MKAGN--TGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSL 267 (644)
T ss_pred HHCCC--HHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 33332 222222333221 111111111111111 11112221111112122 2344568888888876
Q ss_pred HHC-CCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 814 QQR-NLKPAT--ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 814 ~~~-~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
... .+.+.. .++..++......+..++|...+..... ...+.....-.+......++++.+...+..|..... -
T Consensus 268 ~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~--~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~ 344 (644)
T PRK11619 268 VRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM--RSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-E 344 (644)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc--ccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-c
Confidence 543 233332 2344454444443336677777776544 222333333344445578888888888888755432 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
.....+++++++...|+.++|...|+++..
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 566778888888888999999999888743
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.93 E-value=0.23 Score=49.74 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
--++.|.++|++++|++.|..... ..| |.+++..-+.+|.+..++..|..--..++. ++-... .|..-+.+-..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARES 177 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 357889999999999999999887 556 899999999999999999999888888776 333322 67777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
.|+..+|.+-++.+++..+. +.+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~-~~EL 201 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPK-NIEL 201 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcc-cHHH
Confidence 89999999999999987655 4443
No 293
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.89 E-value=3.9 Score=35.36 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=66.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhH
Q 001966 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYT---YVNLIYGFSAAKRLGD 316 (989)
Q Consensus 240 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~ 316 (989)
-.|..++..++..+.... .|..-||.+|--....-+.+-..+.++..-+. -|... ...++..|.+.|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 456777777777777664 45556666665444444444455555544332 12111 1223333333222
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001966 317 VRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIR 396 (989)
Q Consensus 317 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 396 (989)
+..-....++.+.++|+-+.-.++..++.+. -+++....-.+..+|.+.|+..+|-+++.+.-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2222333445566666666666666666542 245566666666777777777777777777666
Q ss_pred CCC
Q 001966 397 MGI 399 (989)
Q Consensus 397 ~g~ 399 (989)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 664
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.66 E-value=0.15 Score=32.57 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=13.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34444444555555555555555544444
No 295
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.61 E-value=0.045 Score=55.03 Aligned_cols=116 Identities=17% Similarity=0.110 Sum_probs=57.4
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
..|.+++|++.+...++ ++|... .|..-..++.+.+++..|++-+..+++.++. ....|..-+.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 44556666666665555 455444 3333445555555566666655555554433 3334444444555556666666
Q ss_pred HHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 913 RLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
..+..+.+.+.+ ..+-..|-.+.-+.+..++-...+++.+
T Consensus 203 ~dl~~a~kld~d--E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYD--EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhcccc--HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 666555555433 2222233333444444444444444433
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.55 E-value=2.2 Score=47.00 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 877 (989)
.+.|+++.|.++.++ .++...|..|+......|+++-|.+.|++..+ +..|.-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345555555544322 22344555555555555555555555554332 233333444455554444
Q ss_pred HHHHHHHh
Q 001966 878 KLKDLIFD 885 (989)
Q Consensus 878 ~~~~~~~~ 885 (989)
++.+.+..
T Consensus 394 kl~~~a~~ 401 (443)
T PF04053_consen 394 KLAKIAEE 401 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.25 E-value=0.16 Score=32.32 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
+.++..+|.+|...|++++|++.++++++. .|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 357899999999999999999999999764 564
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.25 E-value=3.1 Score=37.79 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++..-...++.+++..++..+.- +.|....... -++.+...|+|.+|+.+++++.+..+. .+..-..++.++..
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHH
Confidence 3344445677888888888888887 7887764444 357788889999999999888766533 44444444555555
Q ss_pred cCCHHHHHHHHHHHHHCCCc
Q 001966 905 REEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~ 924 (989)
.|+. +=..+.+++++.+++
T Consensus 91 ~~D~-~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 91 LGDP-SWRRYADEVLESGAD 109 (160)
T ss_pred cCCh-HHHHHHHHHHhcCCC
Confidence 5543 223334445555543
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.10 E-value=22 Score=41.62 Aligned_cols=205 Identities=13% Similarity=-0.066 Sum_probs=108.8
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHhhcCCCCC----C--C-HHhHHHHHH-HHHcCCChHHHHHHHHHHHhccCCC-CC
Q 001966 155 GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFV----P--S-LFSCNALLR-DLLKGKKMELFWKVWAKMNKMNAGG-FE 225 (989)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~--~-~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 225 (989)
|...-.-+.......++++|-.+..++...-.. + + ...++.+-. .....|+++.|..+-+..+.+-++. ..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 333333344556678888888888765432111 1 1 123443322 2355778888988888888765555 66
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHH--HHHHccCC--hhHHHHHHHHHHHCCC---C
Q 001966 226 FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVA---TYNVVI--GGLCRVGF--VDEAVELKNSMVEKGL---V 295 (989)
Q Consensus 226 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li--~~~~~~g~--~~~A~~~~~~m~~~g~---~ 295 (989)
+.+..+..+..+..-.|++++|+.+.++..+..-.-++. .|..+. ..+..+|+ +.+....|........ .
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 677788888888888899999988888776642222332 222222 23445663 2233333333322210 0
Q ss_pred ---CCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCcCHHhH--HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 296 ---PDSYTYVNLIYGFSAAKRLGDVRLVLSE----LIGKGLKLDTVAY--YALIDGFVKQGDVEEAFRVKDELVAS 362 (989)
Q Consensus 296 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (989)
+-..++..+..++.+ ++.+..-... -......|-...+ ..|+......|++++|...++++...
T Consensus 575 ~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred cchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 112233334444333 3333322222 2222222222222 25566677777888877777777654
No 300
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.08 E-value=39 Score=44.39 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001966 583 SIVDGYCKEGNIAEAISKFRCMLARGI--LPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660 (989)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 660 (989)
.+..+-.+++.+.+|...++.-..... .-...-+..+-..|...++++....+...-.. .|+ ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 344566677888888888877311100 11122333444477777887777666553111 111 2233445677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL-LSGCCKEEKLEQALE 739 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 739 (989)
.|+++.|...|+.+...+ ++...+++.++......|.++..+...+..... ..+....|+.+ +.+-.+.++++...+
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 888888888888888763 223566676666666667777776665555443 23333344433 223345566655544
Q ss_pred HH
Q 001966 740 LF 741 (989)
Q Consensus 740 ~~ 741 (989)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
No 301
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=8.9 Score=36.97 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=8.6
Q ss_pred hcCCHhHHHHHHHHHHh
Q 001966 834 RMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~ 850 (989)
..+++.+|+.+|++...
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.95 E-value=0.22 Score=31.72 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555555
No 303
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.75 E-value=7.4 Score=35.21 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKS 381 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 381 (989)
.+|..+.+.+........++.+...+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444455555555555544442 3444555555555543
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.64 E-value=0.12 Score=33.60 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=8.4
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 001966 932 TVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~ 952 (989)
.||.+|.+.|++++|++++++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444
No 305
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.63 E-value=0.11 Score=33.72 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=24.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
+|..|+..|.+.|++++|+.+|++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999966443
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.43 E-value=1.6 Score=46.41 Aligned_cols=107 Identities=12% Similarity=0.010 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh---CCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHH-------CCCcc----
Q 001966 865 DAHCKEGNVMEALKLKDLIFD---KRMPIS-----AEAYKAIIKALCKREEYSEALRLLNEMGE-------SGFRL---- 925 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~---- 925 (989)
..+...|++.+|.+++...-- .|.... ...|+.++....+.|.+.-+..+|.++++ .+.+|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 555666777777776644321 111111 12356666677777777777777777764 11111
Q ss_pred ------CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhh
Q 001966 926 ------GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGE 972 (989)
Q Consensus 926 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 972 (989)
...+.+.+|..|...|+.-.|.+.|.+.... +..|+..|..+++..
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 2445667777788888888888888777643 566777887777765
No 307
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.39 E-value=1.7 Score=42.45 Aligned_cols=79 Identities=14% Similarity=-0.006 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccCC-------HHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 001966 893 EAYKAIIKALCKREE-------YSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMASFGWVS 960 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 960 (989)
..+..+++.|...|+ +..|...|+++.+....| +..+.+.+|..+.+.|++++|.+++.+++..+-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 345556666666666 344555555555443221 24566788888888899999999888887653333
Q ss_pred cchhHHHHHhh
Q 001966 961 NSISLADIVKG 971 (989)
Q Consensus 961 ~~~~~~~l~~~ 971 (989)
....+...++.
T Consensus 199 ~~~~l~~~AR~ 209 (214)
T PF09986_consen 199 KEPKLKDMARD 209 (214)
T ss_pred CcHHHHHHHHH
Confidence 33344444433
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.22 E-value=1.6 Score=41.26 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
.+..++.-|.+.|+.++|++.|.++.+....|... .+..++......|++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555544444333 344455555555565555555555543
No 309
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.13 E-value=1.2 Score=43.81 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 001966 349 VEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSG----------------KMEKAREVLNEIIRMGIEPNSRTYTSLIQG 412 (989)
Q Consensus 349 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 412 (989)
++-....++.|.+.|+..|..+|+.|+..+-|.. .-+=+++++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3333344444555555555555555554433211 123355666666666666666666666666
Q ss_pred HHhcC
Q 001966 413 YCRMR 417 (989)
Q Consensus 413 ~~~~g 417 (989)
+.+.+
T Consensus 168 FGr~~ 172 (406)
T KOG3941|consen 168 FGRWN 172 (406)
T ss_pred hcccc
Confidence 55544
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.07 E-value=51 Score=43.36 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 654 LITSFCKICDVDKAFQLYEEM----CEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCC 729 (989)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 729 (989)
+..+-.+++.+.+|...++.- .+. .....-|-.+...|...++++....+...-.. .|+ ....+....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHH
Confidence 333445566666666666652 111 11122233334466666666666655553111 111 122333445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAML 779 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 779 (989)
..|++..|...|+.+...+++....+..++......|.++..+...+...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 56777777777777777666655555555555555555555555444333
No 311
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.07 E-value=3.2 Score=45.75 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001966 335 AYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYC 414 (989)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (989)
-.+.++..+-+.|-.+.|+.+-..-.. --....+.|+++.|.++.++ .++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 355666666666666666654432211 12223456666666665432 234556666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 001966 415 RMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGK 494 (989)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 494 (989)
+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665432 3445555666666666555555555443 13333334444555555555
Q ss_pred HHHH
Q 001966 495 LVER 498 (989)
Q Consensus 495 ~~~~ 498 (989)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 312
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=5.3 Score=39.14 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=99.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH-
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR-MGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVM- 874 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~- 874 (989)
.+..+-+.|+++-...+..+ +.+..+|..--..+.. ..+..+-++.+.++++ -.|.+. .|..--......|++.
T Consensus 54 ~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e--~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIE--DNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred hccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHhcCccc
Confidence 45566778888888777732 2232233322222222 2246677777787777 556444 5555444555566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh------HHHH
Q 001966 875 EALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD------YAAK 948 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~ 948 (989)
.-+++.+.|+..+.+ +..+|..--+++..-+.++.-+.+..++++.... +-.+|+..--.......+. .-..
T Consensus 131 rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 667788888876655 7778888888888888888888888888877655 5555554322222222221 1222
Q ss_pred HHHHHHhCCCccc-chhHHHHHhhhhc-CC
Q 001966 949 VLECMASFGWVSN-SISLADIVKGENS-GV 976 (989)
Q Consensus 949 ~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g 976 (989)
...+++ .+.|+ ...|.-|...+.. .|
T Consensus 209 yt~~~I--~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 209 YTKDKI--LLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHH--HhCCCCccHHHHHHHHHHhccC
Confidence 333333 35775 4455555555542 55
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.80 E-value=4.4 Score=36.85 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATIT-YRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
.+.++.+++..++..+.- +.|.... -..-+..+...|++.+|..+++++.+
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345566666666666655 4454332 22233445556666666666666554
No 314
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=30 Score=39.53 Aligned_cols=292 Identities=11% Similarity=0.076 Sum_probs=147.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 622 GLSKKLELREALGIFLELLEKGLVPDVDTY----NSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAG 697 (989)
Q Consensus 622 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 697 (989)
+....|+..+|.+++.--+.+.-.+ ...| ..+.-++...|......+++.+.++..-.+....-.+|.-++...|
T Consensus 366 GvIH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 366 GVIHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred ceeeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 3456778888888877665441111 1111 1122234455555557777776665532222223233433444334
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCH-HHHHH-HHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNA--LLSGCCKEEKL-EQALE-LFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
.- -.++|+.+.+.=...+.++-.+ +..+.+-.|.+ .+|++ ++.-..+.......--..+.-++.--|+.++|..
T Consensus 445 Sa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~ 522 (929)
T KOG2062|consen 445 SA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADP 522 (929)
T ss_pred cc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHH
Confidence 22 2334444433211112222111 22223333322 23332 3333333222222223344556677788889999
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 001966 774 LLDAMLEEQVNPNH--DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGK 851 (989)
Q Consensus 774 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 851 (989)
+.+++.... .|-. .-.-+++.+|+..|+-....+++.-... +...|..-+..++-++.-..+.+....+..-+.+.
T Consensus 523 lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses 600 (929)
T KOG2062|consen 523 LIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES 600 (929)
T ss_pred HHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChhhchHHHHHHhhh
Confidence 999988542 2211 1123456678888876666666655443 23455555666666676777888888877766653
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccC-----CHHHHHHHHHHHHHC
Q 001966 852 GIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA---EAYKAIIKALCKRE-----EYSEALRLLNEMGES 921 (989)
Q Consensus 852 g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 921 (989)
.+|... +...|+-+|.-.| ..+|+.+++-|... +. +. .+.-.++-..+++. ++..-++.+.+.+..
T Consensus 601 -~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D-~~-~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 601 -YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSD-PV-DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred -cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcC-hH-HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence 456544 3334445554444 57889999888752 11 21 22333333444443 456666667666644
Q ss_pred C
Q 001966 922 G 922 (989)
Q Consensus 922 ~ 922 (989)
.
T Consensus 677 K 677 (929)
T KOG2062|consen 677 K 677 (929)
T ss_pred h
Confidence 3
No 315
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=3 Score=40.14 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=76.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVM 874 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~ 874 (989)
|....+++.|+..|.+.+. +.|+.. .|..-+.++.+..+++.+..--++.++ +.|+.. ....++........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4445567777777766666 567653 456667777777788888777777777 777766 5555667777777788
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 875 EALKLKDLIFD----KRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 875 ~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
+|+..++++.. ..+.+....+..|..+-.+.=+..++.++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 88887777743 23444556666666655555555555554443
No 316
>PRK09687 putative lyase; Provisional
Probab=91.07 E-value=21 Score=36.86 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
+..+....+.++.+.|+ .+|+..+-+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHc
Confidence 33444444444444444 334444444333
No 317
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.80 E-value=39 Score=39.59 Aligned_cols=333 Identities=11% Similarity=0.059 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 001966 510 CFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYC 589 (989)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (989)
.|.....+ .+.|++..+.++...+...-. .....|..+.... .....++...++++-. +.+.....-......+.
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHH
Confidence 34444433 467788887777666543211 1222233222211 1223454444444322 11222233334444555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 001966 590 KEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 669 (989)
+.+++...+..+ .. .+.+...-.....+....|+.++|......+-..|.. ....+ -.
T Consensus 111 ~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~c----------------d~ 168 (644)
T PRK11619 111 RREDWRGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNAC----------------DK 168 (644)
T ss_pred HccCHHHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHH----------------HH
Confidence 666776665522 11 2345555566677777778777676655555443322 12223 33
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD-GSVYNALLSGCCKEEKLEQALELFRDMLEKG 748 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 748 (989)
+|+...+.|.-.+..++.- +......|+...|..+...+. ++ ......++..+.+ ...+..++...
T Consensus 169 l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~~---p~~~~~~~~~~---- 235 (644)
T PRK11619 169 LFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQND---PNTVETFARTT---- 235 (644)
T ss_pred HHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHHC---HHHHHHHhhcc----
Confidence 4444444443333344433 334455677777777666552 22 2223333333332 22332222221
Q ss_pred CCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 001966 749 LAST--LSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNH--DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI 823 (989)
Q Consensus 749 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 823 (989)
+++. .....++-.-....+.+.|...+.+.... ++.++. ..+..++......+..++|...++..... ..+..
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~ 313 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTS 313 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcH
Confidence 1111 11111111122345678999999987543 233322 33444443334433367777777765542 23444
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
....-+......++++.+...+..|-.. ..-...-.+=++.++...|+.++|...|+++..
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455555556899999999999887552 122333444467888889999999999999853
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.69 E-value=2.8 Score=39.63 Aligned_cols=96 Identities=16% Similarity=0.043 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHh--HH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG---FAS--CR 931 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~--~~ 931 (989)
.+..++.-|++.|+.++|++.|.++.+....+ -...+..+++.....|++..+...+.++........ ... -.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 67788899999999999999999998874433 345678889999999999999999988865432222 111 12
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 001966 932 TVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
.-|-.+...+++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 33445667789999988886553
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.45 E-value=0.4 Score=30.19 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=12.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
..++.++.+.|++++|.+.++++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 334444444444444444444444433
No 320
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.34 E-value=25 Score=36.53 Aligned_cols=147 Identities=12% Similarity=0.193 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCC--
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCK--V----QNMEKAKQLFLEMQQRN---LKPATITYRSLLNGYNRMGN-- 837 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~-- 837 (989)
++.+.+++.+.+.|+..+..+|.+....... . ....+|..+|+.|.+.. -.++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666666555443322222 1 23456777777777642 12334444444433 2222
Q ss_pred --HhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 838 --RSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGN--VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 838 --~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
.++...+|+.+.+.|....+. ....++........ ...+.++++.+.+.+.++....|..+|-...-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 355666777777767776555 22222222211111 346677777777777777666666665444333333243
Q ss_pred HHHHHH
Q 001966 912 LRLLNE 917 (989)
Q Consensus 912 ~~~~~~ 917 (989)
...+.+
T Consensus 237 ~~~i~e 242 (297)
T PF13170_consen 237 VEEIKE 242 (297)
T ss_pred HHHHHH
Confidence 333333
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.23 E-value=0.36 Score=30.37 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 929 SCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
++..+|.++.+.|++++|.+.++++++. -|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 5788999999999999999999999865 454
No 322
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.18 E-value=2.4 Score=41.68 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=14.6
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 001966 632 ALGIFLELLEKGLVPDVDTYNSLITSFCKIC 662 (989)
Q Consensus 632 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 662 (989)
+++++++|...|+.||..+-..+++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 3444444444444444444444444444433
No 323
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.02 E-value=2.5 Score=42.70 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
++..++..+...|+++.+.+.++++++..+- +...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5555667777777778888888777777655 777777777788888888888877777654
No 324
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=31 Score=37.24 Aligned_cols=117 Identities=18% Similarity=0.051 Sum_probs=80.0
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCCC--------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH--HHHHHH
Q 001966 868 CKEGNVMEALKLKDLIFDK-RMPIS--------AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC--RTVAND 936 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~-~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~ 936 (989)
.-.|++.+|++-...|.+- .-.|. +.+...++.-++.-|-++.|...|..+.+...+.|..++ ..++..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 4479999999988888753 11222 223444555556778999999999998877655455443 578999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcccc----------hhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 937 FLREGVMDYAAKVLECMASFGWVSNS----------ISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 937 ~~~~g~~~~A~~~~~~~~~~~~~p~~----------~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
|.+.|+.+.-.++++.+- .||+ .+++..+-....++++.||.+.+.+.
T Consensus 414 YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred HHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999888777777552 2222 22344444457889999999888753
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.63 E-value=0.56 Score=29.79 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=13.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+|..++..|.+.|++++|...|+++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444444444444444444444443
No 326
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=44 Score=38.36 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
.+--+.-+...|+..+|.++-.+. --||-..|..-+.++...++|++-+++-+... .+..|.-.+..|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 334444455666666666665554 34666666666667777777776666554432 23445566666777
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
+|+.+||.+++-+.-.. .....+|.+.|++.+|.+..
T Consensus 757 ~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 77777777776542111 14556667777776665543
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.31 E-value=3.7 Score=41.50 Aligned_cols=75 Identities=9% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 001966 720 VYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLE-----EQVNPNHDTYTTLI 794 (989)
Q Consensus 720 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 794 (989)
++..++..+...|+.+.+.+.+++.+...|.+...|..++.+|.+.|+...|+..|+++.. .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666666666665543 35555554444333
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.02 E-value=7.4 Score=36.07 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001966 838 RSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 887 (989)
+++|...|+++.+ .+|++..|..-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 5677777777777 7888888877665552 4566666665543
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.71 E-value=5.3 Score=35.63 Aligned_cols=79 Identities=19% Similarity=0.020 Sum_probs=63.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++..-...++.+++..+++.+.-..|+ ..+.-..-++.+...|++.+|+.+++.+.+..+. .+..--.++.++...|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 335555689999999999999887766 6666667778899999999999999999888755 46666677888888887
Q ss_pred h
Q 001966 943 M 943 (989)
Q Consensus 943 ~ 943 (989)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
No 330
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.69 E-value=18 Score=38.24 Aligned_cols=113 Identities=8% Similarity=-0.077 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh---cCChhHHHHHH
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR---EGVMDYAAKVL 950 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 950 (989)
+.-+.+++++++.++. +...+..+...+.+..+.++..+.+++++...|. ++..|..+++.... .-.+.....+|
T Consensus 48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4455566666666543 5666666666666666666667777777766655 66666555554333 22344444444
Q ss_pred HHHHh------CCC------ccc-----chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 951 ECMAS------FGW------VSN-----SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 951 ~~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.+.++ .+. .|+ -..+..+...+.+.|.++.|..+++.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 43332 111 111 123355666677888888888877654
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.61 E-value=5 Score=35.82 Aligned_cols=76 Identities=11% Similarity=0.015 Sum_probs=54.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+..-...++.+++..++..|.- +.|+..-... -++.+...|+|++|++++.++.+.+.. .+..-..++.++...||
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 3344568999999999999988 8887774433 457888999999999999999876533 23333344445555554
No 332
>PRK09687 putative lyase; Provisional
Probab=88.32 E-value=34 Score=35.33 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=7.5
Q ss_pred ChhhHHHHHHHHHhcCC
Q 001966 402 NSRTYTSLIQGYCRMRK 418 (989)
Q Consensus 402 ~~~~~~~li~~~~~~g~ 418 (989)
|..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33444444444444444
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.82 E-value=7.2 Score=33.99 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 854 EPDNFTYYVMIDAHCKEGN---VMEALKLKDLIFD-KRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 854 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+...+-..+++++.+..+ ..+.+.+++.+.+ ..+.-..+....|+-++.+.+++++++++.+.+++..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4555566666777766654 4566677777775 333334455566666777888888888888777777655
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.64 E-value=46 Score=38.93 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 001966 865 DAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~ 883 (989)
.-+...|++++|++.++++
T Consensus 513 f~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhC
Confidence 4456778888888777665
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.57 E-value=14 Score=39.76 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=53.0
Q ss_pred HHHhcCCHHHHHHHHHHHHH---CC--CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-------CCCCCCHH--
Q 001966 796 QYCKVQNMEKAKQLFLEMQQ---RN--LKPA---TITYRSLLNGYNRMGNRSEVFVVFEEMLG-------KGIEPDNF-- 858 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~---~~--~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~~-- 858 (989)
.+...|++.+|.+++...-- .| +.|. -..||.++-.+.+.|.+.-+..+|.+++. .|+.|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34455666666666543311 11 1221 11245555556666666666666666653 23333211
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 859 --------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 859 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++.+-.+...|++-.|.+.|.+++..- ..++..|..++.+|..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 12223344555566666666666655442 2255566666555543
No 336
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=5.1 Score=38.72 Aligned_cols=65 Identities=17% Similarity=0.029 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.+..+..++...|++-++++.-.+++...|. +..+|+..+.+....=+..+|.+-+.++++. .|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--dps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--DPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--Chh
Confidence 4455566666777777777777777777766 7777777777777777777777777777553 554
No 337
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.30 E-value=40 Score=35.04 Aligned_cols=129 Identities=16% Similarity=0.284 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHcCC---
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCK--EE----KLEQALELFRDMLEKGL----ASTLSFNTLIEFLCISNK--- 767 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~--- 767 (989)
+...+++.+.+.|+.-+..++.+....... .. ....|.++|+.|.+..| ++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344566666666666665555443322222 11 24567777777777655 222233322211 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 768 -LQEAHQLLDAMLEEQVNPNHD-TYTTLINQYCKVQN---MEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 768 -~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
.+++..+|+.+.+.|+..+.. -+.+-+-+++.... ..++.++++.+.+.|+++....|..++-.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 244555566666655554322 12222222221111 33556666666666666665555544433
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.10 E-value=7.1 Score=37.02 Aligned_cols=75 Identities=15% Similarity=0.020 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---ccCHHhHHHHHHHHHhcCChhHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGF---RLGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
.-++|.+.|-++...+.--+++....|+..|. .-|.++|+.++.++++... ++|+.++..|+.+|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34667777766665544446777777765444 6677888888887776532 356888888888888888888774
No 339
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.01 E-value=1.1 Score=47.85 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=71.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
-+....+.+.++.|+.+|.++++ ++|+...|.. -..++.+.+++..|+.-..++++..+. ....|..-+.++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 34556677788888888888888 7887664443 447778888888888888888877644 5566767777778888
Q ss_pred CHHHHHHHHHHHHHCCCccCHHh
Q 001966 907 EYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
++.+|...|++.....|. ++.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pn-d~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN-DPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcC-cHHH
Confidence 888888888887777766 4444
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.81 E-value=1 Score=28.60 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
|..++..|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 341
>PRK12798 chemotaxis protein; Reviewed
Probab=86.59 E-value=50 Score=35.43 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=120.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY-CKVQNMEKAKQLFLEMQQRNLKPATI----TYRSLLNGYNRMGNR 838 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~ 838 (989)
-.|+.+++.+.+..+.....++....+..|+.+- ....+..+|+++|+...- ..|-.. ....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 4688899999888887666666777777777654 455678899999988765 345433 333344556778888
Q ss_pred hHHHHHHHHHHh-CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001966 839 SEVFVVFEEMLG-KGIEPDNFTY-YVMIDAHCKEGNVMEALKLKDLIFDK-RMPISAEAYKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 839 ~~A~~~~~~~~~-~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 915 (989)
+++..+..+... ....|=...+ ..+...+.+.++-..-. -+..++.. ++.--...|..+++.-.-.|+.+-|...-
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~-~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDA-RLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHH-HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888887777766 2233322222 22233333333222111 23333332 34445678888888888899999998888
Q ss_pred HHHHHCCCcc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhH
Q 001966 916 NEMGESGFRL---GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISL 965 (989)
Q Consensus 916 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 965 (989)
+++....... ...+...-+-+-.-..+.++|.+.+..+-...+.|.+..+
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~L 333 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRAL 333 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHH
Confidence 8887765321 1222223333334456677777777766555555544333
No 342
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.44 E-value=38 Score=35.87 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=78.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---cCCHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK---REEYSEALR 913 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 913 (989)
.+.-+.+++++++ .+|+.. .+..++..+.+..+.++..+.+++++...+. +...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~--~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALK--HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4556677777777 466655 4555667777777777777888888877655 77777766655443 235666666
Q ss_pred HHHHHHHCC------C------ccC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001966 914 LLNEMGESG------F------RLG-----FASCRTVANDFLREGVMDYAAKVLECMASFGW 958 (989)
Q Consensus 914 ~~~~~~~~~------~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 958 (989)
+|.+.+..- . .++ ..++..+.......|-.+.|..+++.+++..+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 666654321 0 001 22456677778899999999999999988766
No 343
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.38 E-value=1.2 Score=45.16 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVME 875 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 875 (989)
....|.+++|++.|...++.+ ++....|..-..++.+.++...|+.-+...++ ++||.. .|-.-..+..-.|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 346778888888888888753 45566777777888888888888888888888 888776 55555566667788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|.+.+..+.+.+..+....| +-.+.-..+..++-...+++..+.
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 88888888887655444333 333344455555555555554433
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.85 E-value=13 Score=32.46 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHH-CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 889 PISAEAYKAIIKALCKRE---EYSEALRLLNEMGE-SGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
.++......+++++.+.. +.++.+.+++++.+ ..|.-.-...+.|+-.+++.|+|+.++++.+..++. +||..-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHH
Confidence 567788888999998765 57788899999986 444434556688999999999999999999999875 787544
Q ss_pred HHHH
Q 001966 965 LADI 968 (989)
Q Consensus 965 ~~~l 968 (989)
...|
T Consensus 107 a~~L 110 (149)
T KOG3364|consen 107 ALEL 110 (149)
T ss_pred HHHH
Confidence 4333
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.76 E-value=96 Score=37.95 Aligned_cols=133 Identities=21% Similarity=0.219 Sum_probs=75.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQAL 738 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 738 (989)
-+.|.+++|+.++..=.+. -...|.+..+.+...+.+++|.-.|+..-+. ...+.+|...|+|.+|+
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREAL 985 (1265)
T ss_pred HhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHH
Confidence 3445555555544322111 2234555555566677777777777654321 22456677778888887
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 739 ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
.+..++....-.-...-..|+.-+...++.-+|-++..+.... | ...+..||+...+++|+.....
T Consensus 986 ~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 986 SLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 7766654321111112256677777788888887777766542 1 2334456666677777765543
No 346
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.48 E-value=1.8 Score=46.40 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPATITY-RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
-++.+...+.++.|+.++.+.++ +.||...| ..-..++.+.+++..|+.=+.++++ ..|+.. .|..-+.++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhH
Confidence 35566778899999999999998 67875544 4445788899999999999999999 778766 677777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
+.+.+|+..++...... |+.......+.
T Consensus 86 ~~~~~A~~~l~~~~~l~--Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLA--PNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHHhhhcC--cCcHHHHHHHH
Confidence 99999999999988754 44444444433
No 347
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.37 E-value=16 Score=35.81 Aligned_cols=66 Identities=15% Similarity=0.039 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 859 TYYVMIDAHCKEGN-------VMEALKLKDLIFDKRMPI-----SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 859 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+..+++.|...|+ ...|++.|+++.+....| ...+...++....+.|+.++|.+.|.+++.....
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34445566666666 344555666665442111 2345556777777888888888888887766533
No 348
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.94 E-value=33 Score=31.85 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=10.2
Q ss_pred HCCCCCChhhHHHHHHHHHhcCC
Q 001966 396 RMGIEPNSRTYTSLIQGYCRMRK 418 (989)
Q Consensus 396 ~~g~~~~~~~~~~li~~~~~~g~ 418 (989)
+.+++|+...|..+++.+.+.|+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.93 E-value=65 Score=35.26 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHH
Q 001966 681 PNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIE 760 (989)
Q Consensus 681 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 760 (989)
.|.....+++..+...-...-...+..+|..-| .+...+..++..|... ..++-..+++++++....+.+.-..|+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355666777788877777777778888888754 4677888888888877 4577788888888888878877777887
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 001966 761 FLCISNKLQEAHQLLDAMLEEQVNP-----NHDTYTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPATITYRSLLNGYNR 834 (989)
Q Consensus 761 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 834 (989)
.|.+ ++.+.+..+|.++...-++. -...|..+...- ..+.+....+...+++. |..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7776 77888888888887542211 123455554322 34566666666666553 333334455555566677
Q ss_pred cCCHhHHHHHHHHHHh
Q 001966 835 MGNRSEVFVVFEEMLG 850 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~ 850 (989)
..++++|++++..+++
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777777776
No 350
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.56 E-value=1.9 Score=28.79 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++..|+.+|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888764
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.48 E-value=1.2 Score=26.25 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 001966 929 SCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+...++.++...|+.++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555666666666666655543
No 352
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=7.1 Score=39.74 Aligned_cols=87 Identities=16% Similarity=-0.016 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDK---RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
++-|.+..++..|...|.+.++. ++..+...|..-+.+....|++..|+.-..+++...|. +..+++.=+.++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHH
Confidence 44455555555555555555543 22233344555555555555555555555555555555 555555555555555
Q ss_pred CChhHHHHHHH
Q 001966 941 GVMDYAAKVLE 951 (989)
Q Consensus 941 g~~~~A~~~~~ 951 (989)
.+..+|..+.+
T Consensus 167 e~~~~a~nw~e 177 (390)
T KOG0551|consen 167 ERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHh
Confidence 55444444333
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.28 E-value=2.4 Score=46.13 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=76.1
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS 909 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 909 (989)
....|+...|...+..+.. ..|... ....|++...+.|....|-.++.+.+..... .+-.+..+++++....+.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhH
Confidence 3457888888888888776 566433 5666777788888888888888888776533 5667777888888888888
Q ss_pred HHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 910 EALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 910 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.|++.++.+++..++ .+..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 888888888888777 7776666655444
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.73 E-value=93 Score=36.12 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 236 DAYFKVRNAEEGKRVFSEMGEKGCRP---NVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAK 312 (989)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 312 (989)
+-+.+.+.++||....+..... .| -...+...|..|.-.|++++|-.+.-.|... +...|-.-+.-+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3455566666666655554432 22 2345666677777777777777777776644 4555555555555544
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 001966 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVK 345 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 345 (989)
.......++ -......+..+|..++..+..
T Consensus 438 ~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 443322221 111222455566666665554
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.17 E-value=9.8 Score=40.55 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=80.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
.--...|++-.|.+-+...... .+.++.........+...|+++.+...+...-..--....+...+++...+.|++++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 3344567777776544444433 232333333333445567888888877766644322445566777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLL 829 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 829 (989)
|...-+-|+...+. ++.........-...|-++++...|+++...+ +|...-|...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~ 432 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFL 432 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-Chhcccceeee
Confidence 88888888765554 44444443434455677888888888877643 33333343333
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.09 E-value=8.7 Score=42.37 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=43.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001966 310 AAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKARE 389 (989)
Q Consensus 310 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 389 (989)
+.|+++.|.++..+.. +..-|..|.+...+.|++..|.+.|..... |..|+-.+...|+-+--..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555554444321 344455555555555555555555544432 2233333444444443333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 390 VLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDE 428 (989)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (989)
+-....+.| ..|. + .-+|...|+++++.+++..
T Consensus 714 la~~~~~~g-~~N~-A----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQG-KNNL-A----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhc-ccch-H----HHHHHHcCCHHHHHHHHHh
Confidence 334444443 2221 1 1233445556555555544
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.56 E-value=4.8 Score=43.98 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=89.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 001966 779 LEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF 858 (989)
Q Consensus 779 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 858 (989)
..+...|-....|...-.....|+...|...+............+....|+....+.|...+|-.++.+.+... ..+.-
T Consensus 599 ~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl 677 (886)
T KOG4507|consen 599 INKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPL 677 (886)
T ss_pred hcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCch
Confidence 33333443344443333345679999999999887763222234567788888899999999999999998832 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
++..+++++....+.+.|++.++++.++.+. +.+.-+.|...-|
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 7888899999999999999999999998766 7777777655444
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.16 E-value=15 Score=34.88 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=51.6
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK---RMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
.-++|...|-++-..+.--+......|+. |....+.++|+.++-++++. +-.+|++++..|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44667777777665444444445555554 44467888888888888765 22567888888888888888888774
No 359
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.01 E-value=17 Score=36.75 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 001966 328 GLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVAS---GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSR 404 (989)
Q Consensus 328 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 404 (989)
|......+...++..--...+++.+...+-.+... -..|+... .+.++.+ -.-+.++++.++..=+.-|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 33444444444444444455566666555555432 01111111 1122222 2234556666666666666667777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 405 TYTSLIQGYCRMRKMVSAFELLDEMKKK 432 (989)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (989)
+.+.+|+.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777766666666655544
No 360
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.74 E-value=17 Score=40.27 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001966 335 AYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYC 414 (989)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (989)
.-+.+++.+-++|..++|+++- +|...- -....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 3445666666666666665431 121111 11233567777777665543 24455777777777
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 001966 415 RMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGK 494 (989)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 494 (989)
+.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|. .|...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 77777777777766543 33455555666666555555555554442 1222334556667776666
Q ss_pred HHHH
Q 001966 495 LVER 498 (989)
Q Consensus 495 ~~~~ 498 (989)
++.+
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6544
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.69 E-value=36 Score=34.25 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 001966 230 SYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290 (989)
Q Consensus 230 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 290 (989)
+++...+.|..+|.+.+|.++.+..+.... .+...|-.++..|...||--.|..-+++|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344555666677777777777777666432 455666666777777777666666666554
No 362
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.63 E-value=3.2 Score=27.66 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
.+++.++..|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888877643
No 363
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.59 E-value=45 Score=30.96 Aligned_cols=20 Identities=10% Similarity=0.188 Sum_probs=8.3
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 001966 409 LIQGYCRMRKMVSAFELLDE 428 (989)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~ 428 (989)
++..+...|++-+|+.+.+.
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33344444444444444433
No 364
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.84 E-value=13 Score=30.41 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
|..+...++..+...|++++|++.+-++++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555555555555555555555555555444
No 365
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.71 E-value=62 Score=32.03 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHH
Q 001966 619 LINGLSKKLELREALGIFLELLEK---GL--VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEK-----GVEPNTLTYNV 688 (989)
Q Consensus 619 li~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 688 (989)
+|....+.+++++....+.+++.- .+ .-.....+++++-.....+.+--.++|+.-++. +-.....|-+.
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 444455555555555555444321 00 001223344444444444444444444333221 11222234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC----C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CChhhH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGV----P-------LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL--ASTLSF 755 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~----~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 755 (989)
|...|...+.+....+++.++.+.-. . .-...|..-|..|..+.+-.+-..+|++.+.... |.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 66677777777777777777654210 1 1123455556777777777777777777665433 444433
Q ss_pred HHHH----HHHHHcCCHHHHHHHHHHHH----HCCCCC--CHHHHHHHHHHHHhcC
Q 001966 756 NTLI----EFLCISNKLQEAHQLLDAML----EEQVNP--NHDTYTTLINQYCKVQ 801 (989)
Q Consensus 756 ~~l~----~~~~~~g~~~~A~~~~~~~~----~~~~~~--~~~~~~~l~~~~~~~g 801 (989)
..+- ..+.+.|++++|..-|-+.. +.|.+. ...-|..|++++.+.|
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3221 23456677777765444433 223211 1233555555555544
No 366
>PRK10941 hypothetical protein; Provisional
Probab=80.65 E-value=13 Score=37.69 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++-.+|.+.++++.|++..+.++...|. ++.-+.-.+-.|.+.|.+..|..-++..++..|+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 3446667777777777777777776655 6666666677777777777777777777766665
No 367
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=20 Score=36.32 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=60.5
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 001966 256 EKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKG---LVPD--SYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLK 330 (989)
Q Consensus 256 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 330 (989)
..|..-.+.+-..++..--...+.+++..++-.++..- ..|+ .++|..++ -.=+..+++.++..=++-|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccc
Confidence 34555556666666666666777778877777765431 1122 22222222 222445666666666666777
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 331 LDTVAYYALIDGFVKQGDVEEAFRVKDELVAS 362 (989)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (989)
||..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777666666665543
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.92 E-value=2.8 Score=28.56 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 931 RTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 931 ~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..|+.+|...|+.+.|+++++++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577788888888888888887764
No 369
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.91 E-value=58 Score=35.03 Aligned_cols=134 Identities=10% Similarity=0.033 Sum_probs=74.0
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHh----Hhhhhhcccc-
Q 001966 76 AHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSA----VDGCFRESDE- 150 (989)
Q Consensus 76 ~~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~- 150 (989)
..||+....+ +.++| + -++++..+..++.+.|+...|..++++++-.-+..-...|+. +.....+++.
T Consensus 23 ~~Dp~~l~~l---l~~~P-y---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~ 95 (360)
T PF04910_consen 23 SHDPNALINL---LQKNP-Y---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR 95 (360)
T ss_pred ccCHHHHHHH---HHHCC-C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc
Confidence 4588876654 44433 3 379999999999999999999999999875111010011100 0000011111
Q ss_pred ccccchhHHH---HHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHH-HcCCChHHHHHHHHHH
Q 001966 151 FVCKGLVFNM---LIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDL-LKGKKMELFWKVWAKM 216 (989)
Q Consensus 151 ~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~ 216 (989)
.+.|...|-+ -+....+.|-++-|+++.+.+...++.-|+...-..|+.+ .+.++++-.+.+++..
T Consensus 96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 1123333322 3556666777777777776666555554555555555543 4455555555555543
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.54 E-value=3.6 Score=28.09 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=20.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 897 AIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
.++.+|...|+.+.|.+++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888888654
No 371
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.94 E-value=13 Score=30.37 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCC
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVD 977 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 977 (989)
+.-+++.++.+|+ |..+...++..+...|++++|.+.+-.+++..-.. +...-..+......-|.
T Consensus 8 ~~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3445666777888 89999999999999999999999999998764333 23444555555444444
No 372
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=69 Score=31.44 Aligned_cols=65 Identities=18% Similarity=0.019 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
.+.++..++...|++-++++.-.+++...+. |..+|..-+.+....=+.++|..-+.++++..|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3444556777778888888888888877655 7777887777777777888888888888877655
No 373
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.73 E-value=1.4e+02 Score=34.84 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 001966 584 IVDGYCKEGNIAEAISKFRC 603 (989)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~ 603 (989)
|+..|...+++..|+..+-.
T Consensus 511 La~LYl~d~~Y~~Al~~ylk 530 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLK 530 (846)
T ss_pred HHHHHHHccChHHHHHHHHh
Confidence 44455555555555554433
No 374
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.63 E-value=1.4e+02 Score=34.97 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKE 591 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 591 (989)
......+|--+.+.|++++|.++..+..+. .......+...+..|...
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 334555666667777777777776443322 233334444555555543
No 375
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.44 E-value=1.6e+02 Score=35.49 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCCCCCCC-HHhHHHHHH---HHHcCCChHHHHHHHHHHH
Q 001966 158 FNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPS-LFSCNALLR---DLLKGKKMELFWKVWAKMN 217 (989)
Q Consensus 158 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~---~~~~~~~~~~a~~~~~~~~ 217 (989)
|..-+..+.....+++|+..-+.....+..-. ...+-..+. -+..++++++|...|.++.
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 66778888888888888887765543221111 111112222 1344555555555555554
No 376
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.36 E-value=21 Score=29.50 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHcCChH--HHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHH
Q 001966 156 LVFNMLIDGYRKIGLLD--EAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTT 233 (989)
Q Consensus 156 ~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 233 (989)
..|+.--..|......| +..+.+..+...+..|++....+.|++|.+-+++..|..+++.+.. ...+....|..
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~----K~~~~~~~Y~~ 84 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD----KCGNKKEIYPY 84 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HTTT-TTHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HccChHHHHHH
Confidence 34555555555544443 5556666666778889999999999999999999999999988876 43333335555
Q ss_pred HH
Q 001966 234 VI 235 (989)
Q Consensus 234 l~ 235 (989)
++
T Consensus 85 ~l 86 (108)
T PF02284_consen 85 IL 86 (108)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 377
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.71 E-value=67 Score=34.11 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHhhcCCCC--CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhcc-----CC-CCCcC
Q 001966 156 LVFNMLIDGYRKIGLLDEAVDLFLCDTGCEF--VPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMN-----AG-GFEFD 227 (989)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~ 227 (989)
....-+..-|..+|+++.|++.|-++++.-- ...+..|-.++..-...|+|......-.++.+.- .. ..++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4677788999999999999999999765421 1224456666777777788777766666665410 00 12333
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 001966 228 VYSYTTVIDAYFKVRNAEEGKRVFSEMGE 256 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 256 (989)
...+..+.... .+++..|...|-....
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCC
Confidence 34444444333 3367777666655543
No 378
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.67 E-value=1.2e+02 Score=33.44 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 612 EVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLID 691 (989)
Q Consensus 612 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 691 (989)
|....-+++..+..+-...-...+..+|++-|- +...|..++..|... ..+.-..+++++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 444444455555555555555555555555432 344455555555444 334445555555544322 3333334444
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTK 711 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~ 711 (989)
.|-+ ++.+.+..+|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 555555555555443
No 379
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=80 Score=31.44 Aligned_cols=218 Identities=11% Similarity=0.037 Sum_probs=108.3
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS-NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNME-KAKQLF 810 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~ 810 (989)
.-+.|+.+-++++..+|.+-.+|..--..+... .++.+-++.++++.+... .+-..|..--......|++. .-+++.
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccchHHHH
Confidence 345666777777777665544443322222221 235555666666665432 24444433222233344555 556666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH----HH--HHhcCCHHHHHHHHHHHH
Q 001966 811 LEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMI----DA--HCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 811 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~----~~--~~~~g~~~~A~~~~~~~~ 884 (989)
+.|... -..+..+|..--.++..-+.++.-+.+..++++..+.- +.+|+.-. .. ....-..+.-+.+..+.+
T Consensus 137 ~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N-NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 137 KLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN-NSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 666653 23445566666666666677777777777777743332 23333211 11 000011233344455555
Q ss_pred hCCCCCCHHHHHHHHHHHHc-cC--CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH------hcCChh---HHHHHHHH
Q 001966 885 DKRMPISAEAYKAIIKALCK-RE--EYSEALRLLNEMGESGFRLGFASCRTVANDFL------REGVMD---YAAKVLEC 952 (989)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~---~A~~~~~~ 952 (989)
..-|. |..+|+.|...+.. .| .......+...+....+..+|.....+.+.|. +.+.-+ +|.++++.
T Consensus 215 ~~vP~-NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~ 293 (318)
T KOG0530|consen 215 LLVPN-NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYED 293 (318)
T ss_pred HhCCC-CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 54333 66777777666654 33 23344444444443333335555555666552 222323 46666665
Q ss_pred HH
Q 001966 953 MA 954 (989)
Q Consensus 953 ~~ 954 (989)
+.
T Consensus 294 La 295 (318)
T KOG0530|consen 294 LA 295 (318)
T ss_pred Hh
Confidence 53
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.50 E-value=79 Score=31.37 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=120.3
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C-
Q 001966 677 KGVEPNTLTYNVLIDGF-CKAGDLTEPFQLFDEMTKRGVPLD---GSVYNALLSGCCKEEKLEQALELFRDMLEK---G- 748 (989)
Q Consensus 677 ~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~- 748 (989)
.+.+||+..-|..-..- .+..++++|+.-|++..+..-.-- ..+...++..+.+.+++++..+.|++++.- .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567766555433221 234578899999998887531111 234556778888899999988888887642 1
Q ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 001966 749 --LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPNH----DTYTTLINQYCKVQNMEKAKQLFLEMQQRNL--- 818 (989)
Q Consensus 749 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 818 (989)
--+..+.+.+++......+.+--.++++.-++. .-..+. .|-..|...|...|.+.+-.++++++.+..-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 134456666776666665555555555543321 000111 2334567777777788777777777765421
Q ss_pred -CCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 001966 819 -KPAT-------ITYRSLLNGYNRMGNRSEVFVVFEEMLG-KGIEPDNFTYYVM----IDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 819 -~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~ 884 (989)
..|. ..|..-+..|-...+-..-..+|++.+. +..-|.......+ +..+.+.|+|++|-.-|=++.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1121 2444455566666666667777777766 2333444333332 256667777777765544444
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.33 E-value=44 Score=34.03 Aligned_cols=103 Identities=15% Similarity=-0.017 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG----KGIEPDNFTYYVMIDAHCKEGNVM 874 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~~l~~~~~~~g~~~ 874 (989)
+++++++|++++..-. ..+.+.|+...|.++..-+++ .+..++......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga---------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA---------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHH---------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4567777777665432 356677888777776665555 345555555556665555443322
Q ss_pred -HHHHHHHHHHh---C--CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 875 -EALKLKDLIFD---K--RMPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 875 -~A~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
+-.++.+++++ . .+.-++..+..++..+.+.|++.+|+..+-
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 23334444432 1 222356677777777777777777777764
No 382
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.87 E-value=16 Score=34.87 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ--VNPNHDTYTTLINQ 796 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 796 (989)
.-++.+.+.+...+++...++-++..|.+......+.+.+|-.|++++|..-++-..... ..+...+|..++.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556667777777777777777777777777777777788888887777766555431 22233455555543
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.61 E-value=11 Score=26.98 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=12.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++-++.+.|++++|.+..+.+++..|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 334444455555555555554444433
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.21 E-value=93 Score=31.52 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
+......|..+|.+.+|.++-++.++.+ +.+...+..++..+...|+--+|...|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444556667777777777777776643 44555666777777777776666666665543
No 385
>PRK10941 hypothetical protein; Provisional
Probab=75.77 E-value=19 Score=36.61 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=56.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
...+-.+|.+.++++.|+++.+.++...|+ ++.-+...|-+|.+.|.+..|..-++..++. .|+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~ 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPE 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCC
Confidence 445667789999999999999999999998 9999999999999999999999999998765 454
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.71 E-value=4.8 Score=24.31 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=10.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
..++.++...|++++|...++++++
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3344444444444444444444433
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.51 E-value=1.2e+02 Score=32.60 Aligned_cols=160 Identities=13% Similarity=0.078 Sum_probs=93.6
Q ss_pred HcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 001966 746 EKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY---CKVQNMEKAKQLFLEMQQRNLKPAT 822 (989)
Q Consensus 746 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~ 822 (989)
...|-...++..+...+..+|+.+.|.+++++.+-.- + .++......+ ...|.. + .......|.
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~---e-~~~~~~F~~~~~~~~~g~~--------r-L~~~~~eNR 100 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF---E-RAFHPSFSPFRSNLTSGNC--------R-LDYRRPENR 100 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---H-HHHHHHhhhhhcccccCcc--------c-cCCccccch
Confidence 5566677788888888888888888888888876210 0 0010000000 001110 0 001122233
Q ss_pred HHHHH---HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHH-HHhcCCHHHHHHHHHHHHhCC------CCC
Q 001966 823 ITYRS---LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDA-HCKEGNVMEALKLKDLIFDKR------MPI 890 (989)
Q Consensus 823 ~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~------~~~ 890 (989)
..|.+ .+..+.+.|-+..|.++.+-+.. ++|+.. ....+++. ..+.++++--+++++...... .-|
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLls--Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLS--LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44433 34567888999999999999998 788633 44444543 456788888888888765421 112
Q ss_pred CHHHHHHHHHHHHccCCH---------------HHHHHHHHHHHHCC
Q 001966 891 SAEAYKAIIKALCKREEY---------------SEALRLLNEMGESG 922 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~ 922 (989)
+ .-...+-++...++. ++|...+.+++..-
T Consensus 179 n--~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 179 N--FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred c--HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 2 233344455566666 88888888887664
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.90 E-value=1e+02 Score=31.40 Aligned_cols=158 Identities=18% Similarity=0.068 Sum_probs=88.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCCH-
Q 001966 764 ISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEM----QQRNLKPATITYRSLLNGYNRMGNR- 838 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~- 838 (989)
+++++++|++++..- ...+.+.|+..-|.++..-+ .+.+.+.+......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 456777777766432 34567888888777655444 4457777777777777777766533
Q ss_pred hHHHHHHHHHHh---CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 839 SEVFVVFEEMLG---KGIEP--DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 839 ~~A~~~~~~~~~---~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
.+-..+.+++++ .|-.| |......++..+.+.|++.+|...+-.. ..++..++..+.......|...
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~---- 138 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPS---- 138 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS-----
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCc----
Confidence 356677777776 23333 4446667789999999999988777321 1222222222322222222222
Q ss_pred HHHHHHHCCCccCHHhHHH-HHHHHHhcCChhHHHHHHHHHHhC
Q 001966 914 LLNEMGESGFRLGFASCRT-VANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+...+.. ..--|...|+...|...++...+.
T Consensus 139 ------------e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 139 ------------EADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------------chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3344433 333577789999999888776654
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.51 E-value=52 Score=31.69 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.+.+.+..++|+...++-++ -+|.+. .-..+++.++-.|+|++|..-++-+-+.
T Consensus 9 seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 344455555666665555555 445443 3334455566666666666555555444
No 390
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.35 E-value=10 Score=27.24 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVM 863 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 863 (989)
.++.++.+.|++++|....+.+++ +.|++.....|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 344555666666666666666666 66665544333
No 391
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.35 E-value=22 Score=29.05 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001966 700 TEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEK 747 (989)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 747 (989)
-++.+-++.+...+..|++.+..+.+.+|.+.+++.-|+.+++....+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345555556666666677777777777777777777777777766544
No 392
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.00 E-value=5.8 Score=23.33 Aligned_cols=23 Identities=26% Similarity=0.070 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHH
Q 001966 157 VFNMLIDGYRKIGLLDEAVDLFL 179 (989)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~~~ 179 (989)
+...|..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567778888888888887765
No 393
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.81 E-value=35 Score=27.95 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcC--ChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHH
Q 001966 158 FNMLIDGYRKIG--LLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVI 235 (989)
Q Consensus 158 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (989)
|++--..|...- +.-+..+.+..+...+..|++....+-|++|.+-+++..|..+++.... ....+...|..++
T Consensus 8 F~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~----K~~~~~~~y~~~l 83 (103)
T cd00923 8 FDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD----KCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HccCchhhHHHHH
Confidence 444433444333 2335555566666668889999999999999999999999999887775 3333444555554
No 394
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.70 E-value=54 Score=27.23 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHH
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTL 758 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 758 (989)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|+.+++.+..+.......|..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 5556666666677788888888888888888888888888888776644333344444
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.10 E-value=1.2e+02 Score=30.41 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhC---CCCCCHHHHHHHH-----HHHHccCCHHHHHHHHHHHHHC
Q 001966 874 MEALKLKDLIFDK---RMPISAEAYKAII-----KALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 874 ~~A~~~~~~~~~~---~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+.|.+.|+++.+. ..+|..+.+..++ -.|-..|+.++|.++.+++.+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4555555555432 1333433333222 2345578888888877776543
No 396
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.83 E-value=7 Score=23.49 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHH
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
.++..+...|++++|...+++.+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444443
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.82 E-value=9.5 Score=36.63 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=46.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 866 AHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 866 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
...+.|+.+.|.++|.++++.-++ ....|..++..-.+.|+.+.|.+.|++.++..|+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 445678888888888888887655 6778888888888888888888888888888776
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.71 E-value=10 Score=29.54 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=29.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccC--HHhHHHHHHHHHhcCChhHHHHHH
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLG--FASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
+..+.+.++|+..+.++++..+++. ..++-.|+.+|...|+++++++..
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777665522 223344555667777776655543
No 399
>PRK12798 chemotaxis protein; Reviewed
Probab=70.63 E-value=1.6e+02 Score=31.79 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=115.3
Q ss_pred cCCHHHHHHHHHHHHHcCC-CChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 731 EEKLEQALELFRDMLEKGL-ASTLSFNTLIEF-LCISNKLQEAHQLLDAMLEE--QVNPNHDTYTTLINQYCKVQNMEKA 806 (989)
Q Consensus 731 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 806 (989)
.|+.+++.+.+..+..... +....+..|+.+ .....+..+|+.+|+...-. |.-........-+-.....|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 6899999999988876655 555667677665 44566899999999988643 2222334445555566789999998
Q ss_pred HHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 807 KQLFLEMQQR-NLKPATI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 807 ~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
..+-.+.... ...|=.. .+.....++.+.++-.. ...+..++.. ++|+.. .|..+...-...|+.+-|.-.-++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8776666543 1222222 22333334444442222 2335555552 556544 777788888889999999999888
Q ss_pred HHhCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 883 IFDKRMP---ISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 883 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
+...... +...+...-+-+-.-..+.++|.+.+..+-..
T Consensus 283 A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 8876322 12222222222334456688888887765433
No 400
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=69.97 E-value=52 Score=28.15 Aligned_cols=59 Identities=17% Similarity=0.023 Sum_probs=29.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH-------HCCCccCHH----hHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMG-------ESGFRLGFA----SCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+..|..++...|++++++.-.++++ +.+.+ ... +...-+.++...|+.++|...|+..-
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3445555555555555544444433 22211 222 23455667777788888877776543
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.68 E-value=13 Score=29.00 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=23.3
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKL 879 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~ 879 (989)
...+.++|+..+++++++-.+|... ++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665532222211 444455666666666655554
No 402
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.42 E-value=45 Score=27.49 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=28.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 001966 341 DGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMG 398 (989)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 398 (989)
..+...|+|++|..+.+.+ +.||+..|-+|.. .+.|-.+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455566666666555544 3556666655543 34555555555555555554
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.41 E-value=1.4e+02 Score=30.14 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 001966 583 SIVDGYCKEGNIAEAISKFRCM 604 (989)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~ 604 (989)
-++..+.+.|++.+|+.+...+
T Consensus 130 Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 3556666677777776655443
No 404
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.22 E-value=55 Score=27.04 Aligned_cols=14 Identities=21% Similarity=-0.009 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHH
Q 001966 798 CKVQNMEKAKQLFL 811 (989)
Q Consensus 798 ~~~g~~~~A~~~~~ 811 (989)
...|+|++|..+.+
T Consensus 50 mNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 50 MNRGDYQSALQLGN 63 (115)
T ss_pred HccchHHHHHHhcC
Confidence 34444444444443
No 405
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=33 Score=35.21 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRN-LKPA--TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
.|.--++-|.+.+++..|...|.+-++.. -.|| .+.|+.-+.+....|++..|+.--.+++. +.|+.. .|..-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 34445667778888888888888877642 2233 45677777777778888888888888887 788766 666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 001966 865 DAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~ 885 (989)
.++....++++|....++..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777777777766665543
No 406
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.55 E-value=24 Score=35.50 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
..+.|+.++|..+|+.++. +.|+.. ....++......++.-+|-.+|-+++...+. +.+++
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~-nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG-NSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC-chHHH
Confidence 4567777788888777777 677655 5555565555566677777777777765544 44443
No 407
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.73 E-value=2.7 Score=38.29 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=30.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKN 287 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 287 (989)
+|..+-+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555556666666666666655444455666666666666665566555555
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.68 E-value=32 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 001966 897 AIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
.++......|++++|...++++++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444455555555555555443
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.44 E-value=70 Score=31.98 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=81.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC-hhhHHHHHHHHHHc
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK-EEKLEQALELFRDMLEKGLAS-TLSFNTLIEFLCIS 765 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 765 (989)
.++..+-+.|+++++...++++...+...+..-.+.+-.+|-. -|....++..+.......... ......++.-|.+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~k 85 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHH
Confidence 4556677778888888888888877666666666666666532 333444555554444332211 11122222222110
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHhHH
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ-YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGY---NRMGNRSEV 841 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A 841 (989)
= -++-..+... ...+++. +.....-.++.-+|.+|.. ..|..++... .+..-.+.|
T Consensus 86 i-e~EL~~~C~e------------ii~lId~~Lip~~~~~eskvfy~Kmkg-------DyyRYlaE~~~~~~~~~~~~~a 145 (236)
T PF00244_consen 86 I-EDELIDICNE------------IIRLIDKSLIPSATSPESKVFYYKMKG-------DYYRYLAEFDSGDEKKEAAEKA 145 (236)
T ss_dssp H-HHHHHHHHHH------------HHHHHHHTCHHHS-SHHHHHHHHHHHH-------HHHHHHHHCTTHHHHHHHHHHH
T ss_pred H-HHHHHHHHHH------------HHHHHHHHHhccccchhHHHHHHHHhc-------cccccccccccchhhHHHHHHH
Confidence 0 0000000000 0111111 1111123344445555542 1122222111 111124566
Q ss_pred HHHHHHHHh---CCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHh
Q 001966 842 FVVFEEMLG---KGIEPDNFTYYVMI-----DAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 842 ~~~~~~~~~---~g~~p~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 885 (989)
...|+++.+ ..+.|.++++..++ -.|...|+.++|.++.+++.+
T Consensus 146 ~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 146 LEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666655 22677776655443 445568999999999888764
No 410
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.30 E-value=2.6 Score=38.37 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=22.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001966 341 DGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLN 392 (989)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (989)
..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444444333344444555555555544444444443
No 411
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.28 E-value=1.7e+02 Score=30.18 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHHHHHH
Q 001966 660 KICDVDKAFQLYEEMC 675 (989)
Q Consensus 660 ~~g~~~~A~~~~~~~~ 675 (989)
...++.+|-.+|-+.+
T Consensus 193 svR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 193 SVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHhHHHHHHHHHHHc
Confidence 3445666666665554
No 412
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.78 E-value=16 Score=35.28 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=51.4
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
...+.|+.+.|.++|.++++ +.|+.. .|..+.....+.|+++.|.+.|++.++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 45678899999999999999 889776 8999999999999999999999999998766
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.48 E-value=1.8e+02 Score=32.12 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=33.4
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCh
Q 001966 239 FKVRNAEEGKRVFSEMGEKGCRPNVAT--YNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSY--TYVNLIYGFSAAKRL 314 (989)
Q Consensus 239 ~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~ 314 (989)
++.|+.+-+ +.+.+.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 344555433 33334565555422 233344445556654 333444455544432 112233444456666
Q ss_pred hHHHHHH
Q 001966 315 GDVRLVL 321 (989)
Q Consensus 315 ~~a~~~~ 321 (989)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544444
No 414
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=63.91 E-value=2.2e+02 Score=30.83 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKP--ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
.|+.-|...|++.+|...++++- ++- ..+.+.+++.+..+.|+...-+.+++.....|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44555666666666666665542 211 23456666666666666666666666555443
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.64 E-value=2.2e+02 Score=31.48 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=7.9
Q ss_pred HHHHHhcCChHHHHHHH
Q 001966 375 LKGFCKSGKMEKAREVL 391 (989)
Q Consensus 375 i~~~~~~g~~~~A~~~~ 391 (989)
+...++.|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34444555555443333
No 416
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.47 E-value=2.5e+02 Score=31.05 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHH
Q 001966 211 KVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVG-FVDEAVELKNSM 289 (989)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 289 (989)
.+|+.+.. .++.|+..|..-+.-+-+.+.+.+...+|.+|....+ .++..|-.-......-+ +++.|..+|.+-
T Consensus 92 ~lyr~at~----rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 92 FLYRRATN----RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHH----hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34555554 5556666666666555555557777777777766521 23334444444433333 366666666665
Q ss_pred HHC
Q 001966 290 VEK 292 (989)
Q Consensus 290 ~~~ 292 (989)
...
T Consensus 167 LR~ 169 (568)
T KOG2396|consen 167 LRF 169 (568)
T ss_pred hhc
Confidence 554
No 417
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.13 E-value=39 Score=27.64 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHh
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVK 970 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 970 (989)
.+.++++...+...-|..+.+|+-.|.+.|+.+.|.+-|+.= +.+-|++..+.+...
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE--KalFPES~~fmDFLm 113 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE--KALFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh--hhhCccchhHHHHHH
Confidence 344555554444434555667777777777777777777643 345676655554443
No 418
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.81 E-value=2.4e+02 Score=30.70 Aligned_cols=88 Identities=9% Similarity=0.064 Sum_probs=49.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHH
Q 001966 413 YCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEA 492 (989)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 492 (989)
+...|+++.+...+...... +.....+...++....+.|++++|...-+-|+...++. ..+........-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHH
Confidence 34567777777666555432 22334556666677777777777777777776665432 22222212222234566777
Q ss_pred HHHHHHHHHC
Q 001966 493 GKLVERMRRE 502 (989)
Q Consensus 493 ~~~~~~~~~~ 502 (989)
.-.++++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 7777776554
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.77 E-value=32 Score=34.66 Aligned_cols=63 Identities=11% Similarity=-0.025 Sum_probs=46.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 866 AHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 866 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
-..+.|+.++|.++|+.++...+. +++++..++.......+.-+|-..|-+++...|. +..++
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~-nseAL 187 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPG-NSEAL 187 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC-chHHH
Confidence 345677888888888888877765 7777777777777777788888888887777665 55544
No 420
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.42 E-value=2e+02 Score=29.13 Aligned_cols=164 Identities=18% Similarity=0.127 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 001966 756 NTLIEFLCISNKLQEAHQLLDAML----EEQVNPNHDTYT-TLINQYCKVQNMEKAKQLFLEMQQR----NLKPATITYR 826 (989)
Q Consensus 756 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~ 826 (989)
..++..+.+.|.+.+|+.+...+. +..-+|+..+.. .--.+|-+..+..++..-+...... -+||....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 346778889999999988876654 223333322211 1122344444454444433333221 2566666666
Q ss_pred HHHHHH--HhcCCHhHHHHHHHHHHhC--CCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHH--HHhCCCCCCHHHHHH
Q 001966 827 SLLNGY--NRMGNRSEVFVVFEEMLGK--GIEPDNFTYYVM---IDAHCKEGNVMEALKLKDL--IFDKRMPISAEAYKA 897 (989)
Q Consensus 827 ~l~~~~--~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~ 897 (989)
-|+.+. +...++.-|..+|-+..+. ....|..+...| +-.-...+..++...++.. .++.--.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 666654 4455788888888888872 233444443332 2112223444444333321 111100113445555
Q ss_pred HHHHHHcc--CCHHHHHHHHHHHH
Q 001966 898 IIKALCKR--EEYSEALRLLNEMG 919 (989)
Q Consensus 898 l~~~~~~~--g~~~~A~~~~~~~~ 919 (989)
++.++... .++..|++-|+.-+
T Consensus 289 vaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHHh
Confidence 55555443 46777777776533
No 421
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.92 E-value=91 Score=31.44 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC----- 798 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 798 (989)
|.++...++|.+++...-+..+..- -.......-|-.|.+.+.+..+.++-...+...-+-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555555444433221 2223333344455566666555555555554322222333444444432
Q ss_pred hcCCHHHHHHHH
Q 001966 799 KVQNMEKAKQLF 810 (989)
Q Consensus 799 ~~g~~~~A~~~~ 810 (989)
-.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666665554
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.19 E-value=1.8e+02 Score=30.22 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=44.9
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK-RMPISAEAYKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 915 (989)
+|..-..+|+-+.. +.|+...-.+-.-+..+..-.+.++.+.+-+.+. ...--...+..-++.+.+.|+.++|...|
T Consensus 311 DW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 311 DWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred ChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence 45555555655555 5555543233333344444456666666655543 12211122334455666677777777777
Q ss_pred HHHHHCCCc
Q 001966 916 NEMGESGFR 924 (989)
Q Consensus 916 ~~~~~~~~~ 924 (989)
++++....+
T Consensus 389 drAi~La~~ 397 (415)
T COG4941 389 DRAIALARN 397 (415)
T ss_pred HHHHHhcCC
Confidence 776666544
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.35 E-value=24 Score=21.53 Aligned_cols=26 Identities=8% Similarity=-0.047 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHCCCccCHHhHHHH
Q 001966 907 EYSEALRLLNEMGESGFRLGFASCRTV 933 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~~~~l 933 (989)
+.+.|..+|++++...|. ++..|..+
T Consensus 2 ~~~~~r~i~e~~l~~~~~-~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPK-SVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCC-ChHHHHHH
Confidence 344444455554444433 44444333
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.28 E-value=48 Score=27.34 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=29.4
Q ss_pred hcCCHhHHHHHHHHHHhC---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 834 RMGNRSEVFVVFEEMLGK---GIEPD-----NFTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~---g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+.|++.+|.+.+.+..+. ...+. ......++..+...|++++|++.++++++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666665555544441 11111 113334556677778888888888877754
No 425
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.02 E-value=1.2e+02 Score=25.47 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001966 312 KRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL 391 (989)
Q Consensus 312 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (989)
...++|..+.+-+...+. -...+--..+..+..+|+|++|. . .......||...|-+|.. .+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l-~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---L-LPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---H-HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---H-hcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 345555555555555443 12223333344566777777771 1 112234566666665543 4667667777777
Q ss_pred HHHHHCC
Q 001966 392 NEIIRMG 398 (989)
Q Consensus 392 ~~~~~~g 398 (989)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6665554
No 426
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=55.72 E-value=1.2e+02 Score=25.87 Aligned_cols=43 Identities=12% Similarity=-0.089 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 911 ALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 911 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+.+-+.+.....|. .+..++.|+.-+...-.|+++..--++.+
T Consensus 63 sve~~s~a~~Lsp~-~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 63 SVECFSRAVELSPD-SAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hHHHHHHHhccChh-HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44455555554444 44455555555544555555555444443
No 427
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.47 E-value=2.4e+02 Score=28.61 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH---
Q 001966 787 HDTYTTLINQYCKVQNMEKAKQLFLEMQQR----NLKPATI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--- 858 (989)
Q Consensus 787 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--- 858 (989)
...+..++..|++.++.+.+.+...+..+. |.+-|.. +-..|+..|....-.++-++..+.|+++|-+=+-.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 355666777777777777777666554432 4444433 22334444545555666677777777755332211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 859 -TYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 859 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
+|.-+. +....++.+|-.++-..+.
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222221 2233456666666655543
No 428
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=55.19 E-value=5.1e+02 Score=32.30 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhCCCCCCHHHHHHH
Q 001966 785 PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSE-VFVVFEEMLGKGIEPDNFTYYVM 863 (989)
Q Consensus 785 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~~~~l 863 (989)
+|...-...+.++.+.+..+. +.... -.++...-...+.++...+..+. +...+..++. ++|...-...
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 455445555555555443321 12222 24555555666666666554332 3444555543 4555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM 943 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 943 (989)
+.++...|..+.+...+..+++ .++..+....+.++...+. +++...+..+++. ++..+...-+.++.+.+..
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D---~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALTD---PHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhcC---CCHHHHHHHHHHHhccCCC
Confidence 6666666665555444555543 2355566666666766665 4566666665542 3556666666666664333
Q ss_pred hHHHHHHHHHHh
Q 001966 944 DYAAKVLECMAS 955 (989)
Q Consensus 944 ~~A~~~~~~~~~ 955 (989)
.++...+..+++
T Consensus 869 ~~a~~~L~~al~ 880 (897)
T PRK13800 869 PAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHh
Confidence 456666666654
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.95 E-value=3.7e+02 Score=30.38 Aligned_cols=214 Identities=14% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHHHHHHHHHcCChH-------HHHHHHHhhc
Q 001966 110 LCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGYRKIGLLD-------EAVDLFLCDT 182 (989)
Q Consensus 110 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~ 182 (989)
+-.++-|++|+.-|.-++.........++ +-.+|......-.+...+...|+.+ .|+-.|+++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~l---------L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~ 318 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLIL---------LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRAL 318 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeee---------eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHh
Q ss_pred CCCCCCCHHhH----------------HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCc-CHHHHHHHHHHHH-hcCCh
Q 001966 183 GCEFVPSLFSC----------------NALLRDLLKGKKMELFWKVWAKMNKMNAGGFEF-DVYSYTTVIDAYF-KVRNA 244 (989)
Q Consensus 183 ~~~~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~ 244 (989)
...+.|..-.| ...+..+.+.|-+..|+++.+-+++ ..+. |+...-.+|..|+ ++.++
T Consensus 319 hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls----Ldp~eDPl~~l~~ID~~ALrareY 394 (665)
T KOG2422|consen 319 HPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS----LDPSEDPLGILYLIDIYALRAREY 394 (665)
T ss_pred ccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCcCCchhHHHHHHHHHHHHHhH
Q ss_pred hHHHHHHHHHhhC---CCCCChhhHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 001966 245 EEGKRVFSEMGEK---GCRPNVATYNVVIGGLCRVGF---VDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVR 318 (989)
Q Consensus 245 ~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 318 (989)
+--+++++..... ...||-.--..++..|.+... -..|...+.+.....+.
T Consensus 395 qwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~----------------------- 451 (665)
T KOG2422|consen 395 QWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL----------------------- 451 (665)
T ss_pred HHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH-----------------------
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001966 319 LVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDEL 359 (989)
Q Consensus 319 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 359 (989)
.+.+-|....+.||..|-+.-+.+......-..|..++-.|
T Consensus 452 vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~l 492 (665)
T KOG2422|consen 452 VLSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKL 492 (665)
T ss_pred HHHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHH
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.85 E-value=2.5e+02 Score=28.43 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEML 570 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 570 (989)
..++..+..-||+.++.+.+.+...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4455566666666666666666555443
No 431
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.74 E-value=1.3e+02 Score=34.06 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=50.4
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
..+..++..+.+.|..-+.. +..|.. ....|.-+|....+.|.|.++++++.+.++. ++-.-..+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHh
Confidence 34556666666666665551 222221 2334555666666777777777777665544 444444455555666
Q ss_pred CCHHHHHHHHHHHHHC
Q 001966 906 EEYSEALRLLNEMGES 921 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~ 921 (989)
|+-++|+....+....
T Consensus 442 ~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSS 457 (872)
T ss_pred cchHHHHHHHHHHHhh
Confidence 6777777766665544
No 432
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.72 E-value=2.9e+02 Score=29.12 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=18.2
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 001966 239 FKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGL 273 (989)
Q Consensus 239 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (989)
....+++.|+.+++...-. |....-.....+|
T Consensus 194 iglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaY 225 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICVTT---PAMAVSHIHLEAY 225 (422)
T ss_pred eccccHHHHHHHHHHHHhc---chhHHHHHHHHHH
Confidence 3556778888777777653 4433333333333
No 433
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.09 E-value=1.5e+02 Score=30.08 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 001966 408 SLIQGYCRMRKMVSAFELLDEMKKK--NLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFK 485 (989)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 485 (989)
.-|.+++..+++.+++...-+.-+. .++|. ....-|-.|.+.|....+.++-...+...-.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3467777777777777665544332 23333 3333444567777777777777777765333333445555544433
Q ss_pred -----cCCHHHHHHHH
Q 001966 486 -----KNKLQEAGKLV 496 (989)
Q Consensus 486 -----~g~~~~A~~~~ 496 (989)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 46666666655
No 434
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.21 E-value=3.2e+02 Score=33.72 Aligned_cols=130 Identities=13% Similarity=0.069 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
.|...++.+...+..+++..+...+++. +.+|+. ++.++.+-+...|.+-+|.+.+-+... .+........++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 3566667777777788888877777772 223322 344455666667777777665533211 111122355566
Q ss_pred HHHHccCCHH------------HHHH-HHHHHHHCCCccCHHhHHHHHHHHHhcCChhHH-HHHHHHHHhC
Q 001966 900 KALCKREEYS------------EALR-LLNEMGESGFRLGFASCRTVANDFLREGVMDYA-AKVLECMASF 956 (989)
Q Consensus 900 ~~~~~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 956 (989)
-.++.+|+++ +... +++++....+-.....|..|-..+...++|.+| -.+|+-....
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 6677777653 3333 334433333332344444454555666777554 4555555443
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=3e+02 Score=28.54 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
++...+.-|++-|+.+.|.+.+++..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 436
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.03 E-value=47 Score=21.54 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCChhHHHHH
Q 001966 931 RTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 931 ~~l~~~~~~~g~~~~A~~~ 949 (989)
..+|-.+...|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444444444444444
No 437
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.89 E-value=4.8e+02 Score=30.41 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=20.2
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhh
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCD 181 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 181 (989)
++.-|+ .+..+.-.|.+++|..++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 366676 688888999999999999544
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.52 E-value=1.3e+02 Score=26.53 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDL 882 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 882 (989)
++.++|+.|..+|+--... -|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555544444333 333344555555555555555543
No 439
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.17 E-value=1.3e+02 Score=26.46 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 001966 841 VFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKD 881 (989)
Q Consensus 841 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 881 (989)
+.++|..|..+|+-.... -|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555544444433 23334444555555555555553
No 440
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.89 E-value=35 Score=22.15 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=9.1
Q ss_pred HHHHHHHHHccCCHHHHHHH
Q 001966 895 YKAIIKALCKREEYSEALRL 914 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~ 914 (989)
+..++-.+..+|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444555555555444
No 441
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.40 E-value=3.2e+02 Score=28.02 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 001966 510 CFNSLIIGLCKAKRMDEA 527 (989)
Q Consensus 510 ~~~~li~~~~~~g~~~~A 527 (989)
+|..|+.++|..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455555555555555543
No 442
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.37 E-value=5.2e+02 Score=30.11 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 001966 368 LVIYNTLLKGFCKSGKMEKAREVLNE 393 (989)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~ 393 (989)
..-|+ .+..+.-.|.+++|.++++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45565 45566667888888888743
No 443
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.27 E-value=3.6e+02 Score=28.21 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=77.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC------KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG 836 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 836 (989)
...+.++++..++++....+. |.+......|.++- ..-+|..-..+|+.+.. +.|++++-.+-..+..+.-
T Consensus 267 W~r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~ 343 (415)
T COG4941 267 WDRALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMRE 343 (415)
T ss_pred hhHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhh
Confidence 344556778888888877654 67766666665542 22356666777777777 5566554333333444444
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNFTY-YVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
-.+.++.+.+-+.+.+--.+...| ..-+..+.+.|+.++|...|++++.....
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 566777777776653212222222 33457888899999999999999886433
No 444
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.22 E-value=1.2e+02 Score=26.47 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001966 701 EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLA 750 (989)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 750 (989)
+..+-++.+...++.|++.+....+.+|.+.+++..|+.+|+-+..+-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 34445555566667778888888888888888888888888777765443
No 445
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=46.07 E-value=2e+02 Score=27.38 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCChhhHHHHHH-HHHccC--ChhHHHHHHHHHHHC
Q 001966 231 YTTVIDAYFKVRNAEEGKRVFSEMGEK--GCRPNVATYNVVIG-GLCRVG--FVDEAVELKNSMVEK 292 (989)
Q Consensus 231 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~-~~~~~g--~~~~A~~~~~~m~~~ 292 (989)
++..+-.....|++++|..-++++.+. .++.-...|..+.. ++|..+ .+-+|.-++.-....
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 444444555666777776666666432 01111233444443 455443 355666666665543
No 446
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.68 E-value=2e+02 Score=24.86 Aligned_cols=61 Identities=18% Similarity=0.067 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCHH-HHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGK-----GIEPDNF-TYYVM----IDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~-~~~~l----~~~~~~~g~~~~A~~~~~~~~ 884 (989)
.+..|..++...|++++++...+..+.. .+..|.- .|... ..++...|+.++|++.|+.+.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3445555566666666655544444331 1344433 33332 245566677777777766553
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.28 E-value=95 Score=33.66 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh--CC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLG--KG----IEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~g----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
...|++.++-.|++..|++.++.+-- .+ +.+- ..+++.++-+|...+++.+|++.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888877765421 11 1222 2256667777777788888888877765
No 448
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.60 E-value=64 Score=31.09 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=48.8
Q ss_pred ccCChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 75 RAHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 75 ~~~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...|+.....+-.|+.+--.+.| ++..|..++.++...|+.++|...+.++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999888888 999999999999999999999999999877
No 449
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.42 E-value=2.7e+02 Score=29.10 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HH
Q 001966 757 TLIEFLCISNKLQEAHQLLDAMLEE---QVNPNHDTYT--TLINQYCKVQNMEKAKQLFLEMQQ-----RNLKPATI-TY 825 (989)
Q Consensus 757 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~-~~ 825 (989)
.++...-+.++.++|+++++++.+. .-.|+.+.|. ..+..+...|+..++.+.+++..+ -+++|+.. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444455566788888888887642 2344555443 345556677888888888777766 46666544 34
Q ss_pred HHHHHHH
Q 001966 826 RSLLNGY 832 (989)
Q Consensus 826 ~~l~~~~ 832 (989)
..+..-|
T Consensus 160 Y~lssqY 166 (380)
T KOG2908|consen 160 YSLSSQY 166 (380)
T ss_pred HHHHHHH
Confidence 5454444
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.11 E-value=59 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 001966 828 LLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~ 847 (989)
++.++...|++++|.++.++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33333444444444443333
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.30 E-value=89 Score=27.42 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=18.8
Q ss_pred HHHHHHHHHHCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 911 ALRLLNEMGESGFRL-GFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 911 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+..+|.-|...+.-. .+.-|...|..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433221 23334455555555555555555554
No 452
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.92 E-value=2.4e+02 Score=30.65 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHHC
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQVNPNHD--TYTTLINQY--CKVQNMEKAKQLFLEMQQR 816 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 816 (989)
+..+...+++..|.++++.+... ++++.. .+..+..+| -..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556788889999998888875 444443 344444554 3456778888888887653
No 453
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.77 E-value=2.5e+02 Score=32.54 Aligned_cols=199 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHc--CC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHhc
Q 001966 735 EQALELFRDMLEK--GL--ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT----------YTTLINQYCKV 800 (989)
Q Consensus 735 ~~A~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~ 800 (989)
++--..+.+|..+ +| -...+...++-.|....+++.-+++.+.+.. -||..- |.-.++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---------HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGY---------NRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG 871 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 871 (989)
|+-++|+...-.+.++.-+-.+..|...++.| ...+..+.|.+.|+++.+ ..|...+=.+++..+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
..=+--.-++++ |.. |...+.+.|.++.-..+|+-+--.+.. .-++++.+|.+.-+
T Consensus 335 ~~Fens~Elq~I---gmk--------Ln~LlgrKG~leklq~YWdV~~y~~as-------------VLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 335 EHFENSLELQQI---GMK--------LNSLLGRKGALEKLQEYWDVATYFEAS-------------VLANDYQKAIQAAE 390 (1226)
T ss_pred hhccchHHHHHH---HHH--------HHHHhhccchHHHHHHHHhHHHhhhhh-------------hhccCHHHHHHHHH
Q ss_pred HHHhCCCcccchhHH
Q 001966 952 CMASFGWVSNSISLA 966 (989)
Q Consensus 952 ~~~~~~~~p~~~~~~ 966 (989)
.| ++-.+..||
T Consensus 391 ~m----fKLk~P~WY 401 (1226)
T KOG4279|consen 391 MM----FKLKPPVWY 401 (1226)
T ss_pred HH----hccCCceeh
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.18 E-value=51 Score=24.63 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=9.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 001966 303 NLIYGFSAAKRLGDVRLVLSEL 324 (989)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m 324 (989)
.+|.||...|++++|.++.+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 455
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.85 E-value=7.9e+02 Score=30.66 Aligned_cols=250 Identities=11% Similarity=0.017 Sum_probs=137.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 645 VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 645 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
.+|..+-...+..+.+.+.. .+...+..+++. ++...-...+.++.+.+........+..+... +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 34555555666666665543 344444455432 34444444444444433221122233333332 455555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNME 804 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 804 (989)
+.++...+..+ . ..+-..+. -++.......+.++.+.+..+. +..... .++...-...+.++...+..+
T Consensus 705 ~~aL~~~~~~~-~-~~l~~~L~--D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 705 LDVLRALRAGD-A-ALFAAALG--DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHhhccCC-H-HHHHHHhc--CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 66655433211 1 12222222 2344444555555555544321 222332 456666666777777766544
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 805 K-AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 805 ~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
. +...+..+.+ .+|...-...+.++...|..+.+...+..+++ +++...-...+.++...+. ++|...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 4455555554 46777788888888888877666566666664 4555454455666666665 5677777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 884 FDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 884 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
++ .++..+....+.++.+.+...++...+.++++..
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDS 882 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 64 4577788888888887644556777777777643
No 456
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.49 E-value=1.1e+02 Score=30.80 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=35.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..+.++++++.|....+..+..+|+ |+.-+..-|-+|.+.|-+.-|++-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 4456666666666666666666666 666666666666666666666666666443
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.10 E-value=4.3e+02 Score=27.37 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFD--------------------- 885 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------- 885 (989)
.++....+..+.++-++....+++ ++|.-.+.+.|+ +-.+..-..+|.++++++++
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALe--IN~eCA~AyvLL-AEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALE--INNECATAYVLL-AEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHh--cCchhhhHHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Q ss_pred ---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 886 ---KRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG-FASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 886 ---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.+...-..+-..++-+..+.|+..||.+.++.+.+..|-.. ..+..+|+.++....-|.+...++-+--+..+...
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS 345 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS 345 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Q ss_pred chhHHHHH
Q 001966 962 SISLADIV 969 (989)
Q Consensus 962 ~~~~~~l~ 969 (989)
..+.+.-+
T Consensus 346 A~icYTaA 353 (556)
T KOG3807|consen 346 AAICYTAA 353 (556)
T ss_pred HHHHHHHH
No 458
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.77 E-value=5.8e+02 Score=31.72 Aligned_cols=125 Identities=11% Similarity=0.144 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TY 860 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~ 860 (989)
-|...+..+-+.+..+.+.++-...++. .+++ ..+++.+.+-+...|.+-+|...+- ..||.. ..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~------~npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL------RNPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH------cCCcHHHHHHHH
Confidence 3555666666777777777766666553 2332 2245555565666666666554432 245543 34
Q ss_pred HHHHHHHHhcCCHHH------------HHH-HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHH
Q 001966 861 YVMIDAHCKEGNVME------------ALK-LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRL-LNEMGE 920 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~------------A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 920 (989)
..++..+++.|.++. ... +++..-+..+-.....|..|-.-+...+++.+|-.+ |+-+..
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 445555566555432 233 333333332222333444454445566666665554 333333
No 459
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.38 E-value=54 Score=20.59 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=17.3
Q ss_pred ChhHHHHHHHHHHhCCCcccchhHHHHHh
Q 001966 942 VMDYAAKVLECMASFGWVSNSISLADIVK 970 (989)
Q Consensus 942 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 970 (989)
.++.|..+|++.+.. .|+...|+..+.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 356677777777654 577766666554
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.37 E-value=1.2e+02 Score=32.92 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh-------CCCCCCHH--HHH---HHHHHHHhcCCHHHHHHHHHHHHhC--C---
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLG-------KGIEPDNF--TYY---VMIDAHCKEGNVMEALKLKDLIFDK--R--- 887 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~~--~~~---~l~~~~~~~g~~~~A~~~~~~~~~~--~--- 887 (989)
-..++.++....+..+-.+..+...+ .|..|-.. .|. .|++.++-.|++..|++.++.+.-. +
T Consensus 78 VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~ 157 (404)
T PF10255_consen 78 VLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYT 157 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhc
Confidence 34455556666677776666655211 12222111 122 3458888899999999998765311 0
Q ss_pred --CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 888 --MPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 888 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
+.-...++..+|-+|...+++.+|++.|...+-
T Consensus 158 ~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 158 KVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344688899999999999999999987653
No 461
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.33 E-value=1.1e+02 Score=29.40 Aligned_cols=35 Identities=17% Similarity=0.026 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 889 PISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
.|++..+..++..+...|+.++|....+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34555555555555566666666555555555544
No 462
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.92 E-value=4.5e+02 Score=27.27 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC-CCC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKG-IEP-DN----FTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
.|+..|.+.++|..|...+.-+-..+ ..- |. .++..++++|.+.++..+|..+..+.
T Consensus 108 ~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 108 HLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44555566666666655554332211 111 11 13334456666666666666665554
No 463
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.86 E-value=2.7e+02 Score=27.61 Aligned_cols=32 Identities=28% Similarity=0.156 Sum_probs=22.0
Q ss_pred HHHHHHHHHH---------HccCCHHHHHHHHHHHHHCCCc
Q 001966 893 EAYKAIIKAL---------CKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 893 ~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..|..++..+ ...++.+.|..+++++.+.+++
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 3455555555 2456778888888888888766
No 464
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.57 E-value=3.4e+02 Score=29.52 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHhHHHHHHHHHHh
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPATI--TYRSLLNGYN--RMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 850 (989)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455788999999999998886 555544 4555555553 46678888888888776
No 465
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=5.5e+02 Score=27.72 Aligned_cols=195 Identities=14% Similarity=0.085 Sum_probs=102.7
Q ss_pred hhhhhhCCCCCCCCChHHHHHHHHhhccCChhHHHHHHHHhhhhcCC-------------CCC------ChHhHHHHHHH
Q 001966 49 WQRLLTSSNVPKKLNPDVIRSVIHLNRAHNLTRLLSFFHWSERQMGT-------------CQN------DLKVLSLLFVV 109 (989)
Q Consensus 49 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ff~~~~~~~~~-------------~~~------~~~~~~~l~~~ 109 (989)
|..+.-.+....+++..++..++..+.+++.+.-..+.+++-..... ... -..+|+.++-.
T Consensus 54 ~R~lr~l~~~r~kln~~vL~~~v~~~~~~~se~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~~k~~~~Ei~aY~~lLv~ 133 (493)
T KOG2581|consen 54 LRALRLLPSTRRKLNGAVLYKLVSSLLSSGSEAMDRLLRFVPAFDKNIKPLDTDSPNTQSALKRKPLPAEIEAYLYLLVL 133 (493)
T ss_pred HHHHHhhhhhHhhhhHHHHHHHHHHHcCCchHHHHHHHhhcccccccCCcccccccccccccccCCchHHHHHHHHHHHH
Confidence 66666556666778998888888776544433333333443221100 000 14566655544
Q ss_pred Hh--cCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHHHHHHHHHcCChHHHHHHHHhhcCC-CC
Q 001966 110 LC--NCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGC-EF 186 (989)
Q Consensus 110 l~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 186 (989)
|. .++.+.+|..+-+..+.. +...=.+++.-+ ....|..+-.+|-..|+..+-...+...... ..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~-------i~~~nrRtlD~i-----~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLAS-------ISIQNRRTLDLI-----AAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH-------HHhcchhhHHHH-----HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 43 668888888887776651 100000111101 2245666777788888876666665543221 11
Q ss_pred C----CCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHH--HHHHHHHHHhcCChhHHHHHHHHHhhC
Q 001966 187 V----PSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYS--YTTVIDAYFKVRNAEEGKRVFSEMGEK 257 (989)
Q Consensus 187 ~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 257 (989)
. --..--|.||+.|.-.+.++.|...-.+..- |+....|..+ ...++.+..-++++..|.+.|-.....
T Consensus 202 rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 1 1234456777777777888888766554332 0011111221 223344455566777777766666554
No 466
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.20 E-value=4.8e+02 Score=26.82 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhH
Q 001966 366 IDLVIYNTLLKGFCKSGKMEKAREVLNEIIRM-GIEPNSRTYTSLIQGYCRMRKMVS 421 (989)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~ 421 (989)
++..+...++..+++.+++.+-.++++..... +...|...|...|......|+..-
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 34444445555555555555555555444333 333444555555555555555433
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.01 E-value=3e+02 Score=28.99 Aligned_cols=64 Identities=9% Similarity=0.191 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
.++...++..++. .-|+.. -|..++......|.++..+.+|++++..|..|-.+....+++.+.
T Consensus 119 ~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3456666666666 455543 355666777777777777777877777777776677666666655
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.45 E-value=1.1e+02 Score=30.89 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 001966 863 MIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~ 883 (989)
++.-|.+.|++++|.++++.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554
No 469
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.23 E-value=84 Score=24.90 Aligned_cols=60 Identities=8% Similarity=-0.114 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---Cc-cCHHhHHHHHHHHHhcCChhHHH
Q 001966 872 NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG---FR-LGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 872 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
.++.|.+..++++.. -..|+.++|+..|++.+..- .. |.+ .....-.|+.|.
T Consensus 4 ~~~~A~~~I~kaL~~----------------dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~--------~~~~~~~w~~ar 59 (79)
T cd02679 4 YYKQAFEEISKALRA----------------DEWGDKEQALAHYRKGLRELEEGIAVPVP--------SAGVGSQWERAR 59 (79)
T ss_pred HHHHHHHHHHHHhhh----------------hhcCCHHHHHHHHHHHHHHHHHHcCCCCC--------cccccHHHHHHH
Confidence 456666666666542 23488888888887765431 11 111 233445577777
Q ss_pred HHHHHHHh
Q 001966 948 KVLECMAS 955 (989)
Q Consensus 948 ~~~~~~~~ 955 (989)
++-++|.+
T Consensus 60 ~~~~Km~~ 67 (79)
T cd02679 60 RLQQKMKT 67 (79)
T ss_pred HHHHHHHH
Confidence 77777754
No 470
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.87 E-value=2.4e+02 Score=22.88 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=8.9
Q ss_pred ccCChhHHHHHHHHHH
Q 001966 275 RVGFVDEAVELKNSMV 290 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~ 290 (989)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3455555555555555
No 471
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.66 E-value=2.5e+02 Score=23.98 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 406 YTSLIQGYCRMRKMVSAFELLDEMKK 431 (989)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (989)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777777665
No 472
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=35.42 E-value=65 Score=21.24 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.+|..||.+-...+++++|..-|++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567788888888888888887777654
No 473
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.27 E-value=2.6e+02 Score=31.86 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA------TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYY 861 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~ 861 (989)
.|+.... ..+..++..+++.|..-... ++.| ......+.-+|....+.|.|.++++++-+ .+|... +-.
T Consensus 357 LWn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~ 432 (872)
T KOG4814|consen 357 LWNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQL 432 (872)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHH
Confidence 4555444 45677899999999876653 3333 23456777888899999999999999998 778666 555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.+..+....|.-++|+.........
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 5668888899999999998887654
No 474
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.99 E-value=4.1e+02 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 337 YALIDGFVKQGDVEEAFRVKDELVAS 362 (989)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (989)
.+++-.|-+.-++.+..++++.|.+.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777778888888888887664
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.60 E-value=1.9e+02 Score=29.23 Aligned_cols=60 Identities=17% Similarity=0.002 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
-..+.+.++++.|....++.+..++. ++.-+.--+.+|.+.|...-|+.-++..++.-|+
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 36778889999999999999988776 7777888888899999999999999998888766
No 476
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=6.9e+02 Score=27.72 Aligned_cols=157 Identities=16% Similarity=0.011 Sum_probs=95.3
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHH--------HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 001966 798 CKVQNMEKAKQLFLEMQQR-NLKPATI--------TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFT--YYVMIDA 866 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~-~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~ 866 (989)
.-.|++.+|++-+..|.+- .-.|.+. ....++.-++.-|.++.|...|..+.+.--.-|... -.+++..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 4568999998888887652 1233311 112223334557789999999888877322223322 2345677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHHhHHHHHH
Q 001966 867 HCKEGNVMEALKLKDLIFDKRMPI-S-----AEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----LGFASCRTVAN 935 (989)
Q Consensus 867 ~~~~g~~~~A~~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~ 935 (989)
|.+.|+-+.-.++.+.+-..+..+ . ..++..-+-....++++.||...+.+.++..-- ........|+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 888777666666655543221111 1 122333444457889999999999988766422 12334567888
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 001966 936 DFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 936 ~~~~~g~~~~A~~~~~~~~ 954 (989)
+....|+..++.....-..
T Consensus 494 v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHhcchHHHHhccchHH
Confidence 8889999988887765543
No 477
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.14 E-value=6.8e+02 Score=27.36 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
..|+.-|.-.|+..||.+.++++--- .-.+..++.+++.+..+.|+-..-+.+++.....+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34556677788888888887765311 11245567778777888887777777776665554
No 478
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=32.94 E-value=3.8e+02 Score=24.33 Aligned_cols=94 Identities=12% Similarity=0.107 Sum_probs=52.0
Q ss_pred cCCCCCCCH--HhHHHHHHHHHcCCChHHHHHHHHHHHhccCCC--CCcCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhh
Q 001966 182 TGCEFVPSL--FSCNALLRDLLKGKKMELFWKVWAKMNKMNAGG--FEFDVYSYTTVIDAYFKVRN-AEEGKRVFSEMGE 256 (989)
Q Consensus 182 ~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 256 (989)
.+.+..++. ...|.+|.-+...+.+...+.+.+.+....+.. ...+..+|.++.++..+..- .--+..+|.-|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 345777777777777777777766664422211 12344456666666654444 3445556666665
Q ss_pred CCCCCChhhHHHHHHHHHc
Q 001966 257 KGCRPNVATYNVVIGGLCR 275 (989)
Q Consensus 257 ~~~~~~~~~~~~li~~~~~ 275 (989)
.+.+++..-|..+|.+..+
T Consensus 109 ~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cCCCCCHHHHHHHHHHHHc
Confidence 5555566666666655443
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.65 E-value=5e+02 Score=25.67 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 001966 579 VIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSF 658 (989)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 658 (989)
....--+..|.+.-++.-|...++++.+ ...+-.++++ |.+..+..--..+.+-....++.-+......++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHHC-CC-----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 659 CKICDVDKAFQLYEEMCEK-GV-----------EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 659 ~~~g~~~~A~~~~~~~~~~-~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
...|++.+|+..++.-... |. .|.......++..+.+ +++++|.+.+.++-+.|+.|....-+..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 480
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.12 E-value=95 Score=31.64 Aligned_cols=77 Identities=8% Similarity=-0.126 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 856 DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA-IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 856 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
|...|...+.-..+.|.+.+.-.++.+++++.|. |.+.|-. -..-+...++++.+..++.+.+..+++ +|..|...-
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHHHHH
Confidence 4445666555555667888888888888888765 7777754 445577889999999999999988887 777775443
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.91 E-value=5.1e+02 Score=25.53 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 001966 783 VNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP---ATITY--RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN 857 (989)
Q Consensus 783 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 857 (989)
+.+...-++.|+--|.-...+.+|.+.|..-. |++| |..++ ..-+......|+.++|++...+.-..-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 34455556666666655555666666665433 3444 23333 34556668889999998888775432122333
Q ss_pred HHHHHHH----HHHHhcCCHHHHHHHHHHHHhC
Q 001966 858 FTYYVMI----DAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 858 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
..+..|. --+.+.|..++|+++.+.-+..
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~ 132 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAP 132 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccc
Confidence 2222221 2345678888888888765543
No 482
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.82 E-value=2.8e+02 Score=22.49 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 520 KAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTA 562 (989)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 562 (989)
..|+.+.|.+++..+. +| +..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3466666666666665 42 22455566666555554433
No 483
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.79 E-value=2.4e+02 Score=24.63 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 001966 178 FLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNK 218 (989)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (989)
+......+..|++..--.-|+++.+-+++..|..+|+.+..
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444557778888888888888888888888888887765
No 484
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.63 E-value=3.7e+02 Score=33.78 Aligned_cols=155 Identities=19% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHhcCCHhHHHH------HHH-HHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH-------HHHHHHhCCCCCCHH
Q 001966 829 LNGYNRMGNRSEVFV------VFE-EMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALK-------LKDLIFDKRMPISAE 893 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~------~~~-~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~-------~~~~~~~~~~~~~~~ 893 (989)
.......|.+.+|.+ ++. .|.. ..|+.. .|..+...+.+.|+.++|+. +.+++...+..-+..
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~--~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGV--LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhh--cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH--------HCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCcc
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMG--------ESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS-----FGWVS 960 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p 960 (989)
.|..+.-.....++...|...+..+. +..|. -..+...+...+...++++.|.+.++.+.+ .|-++
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~-~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP-TALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCc-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Q ss_pred --cchhHHHHHhhhhcCCChhhHHHHHh
Q 001966 961 --NSISLADIVKGENSGVDLDESKDLMK 986 (989)
Q Consensus 961 --~~~~~~~l~~~~~~~g~~~~a~~~~~ 986 (989)
+...+..+++.....|++..|....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHh
No 485
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.44 E-value=1.1e+02 Score=31.31 Aligned_cols=80 Identities=10% Similarity=-0.013 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 818 LKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYV-MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 818 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
...|+..|...+.-..+.|.+.+.-.++.+.+. ..|.+. .|.. -..-+...++++.+..++.+.++.++. ++..|
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~--khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw 179 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT--KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIW 179 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHH
Confidence 455677788877777778889999999999998 678655 4443 224566789999999999999998876 77777
Q ss_pred HHHHH
Q 001966 896 KAIIK 900 (989)
Q Consensus 896 ~~l~~ 900 (989)
....+
T Consensus 180 ~eyfr 184 (435)
T COG5191 180 IEYFR 184 (435)
T ss_pred HHHHH
Confidence 76644
No 486
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.28 E-value=4.7e+02 Score=24.98 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=11.5
Q ss_pred HccCCHHHHHHHHHHHHH
Q 001966 903 CKREEYSEALRLLNEMGE 920 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~ 920 (989)
.+.|++++|...++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456777777777665543
No 487
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.23 E-value=7.6e+02 Score=27.31 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=22.9
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHhCCCCcCHhhHHHHH
Q 001966 406 YTSLIQGYCR---MRKMVSAFELLDEMKKKNLVPSVFTYGVII 445 (989)
Q Consensus 406 ~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 445 (989)
...++.++.+ .++.+.|+.++..|.+.|..|....-..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3344444443 467777777777777777665544433333
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.89 E-value=3.3e+02 Score=25.76 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHCCCCCCH--H-----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 001966 349 VEEAFRVKDELVASGNQIDL--V-----IYNTLLKGFCKSGKMEKAREVLNEIIRMGIEPNSRTYTS 408 (989)
Q Consensus 349 ~~~A~~~~~~~~~~g~~~~~--~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 408 (989)
++.|..+|+.+.+.-..|+. . .--..+-.|.+.|.+++|.++|++... .|+......
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~ 148 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRM 148 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHH
Confidence 45566666666554222211 0 112234457788888888888888775 344444333
No 489
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=30.73 E-value=69 Score=29.53 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCCChhHHHHhHhhh
Q 001966 121 AIVKRMISDGNNSGFEILSAVDGC 144 (989)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~ 144 (989)
.+++.+++.+...++++...|+..
T Consensus 10 nIL~TL~rld~~~~p~li~~LLsa 33 (164)
T PF07840_consen 10 NILETLARLDHDSPPELIDNLLSA 33 (164)
T ss_dssp GGHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccHHHHHHHHHH
Confidence 445555554455555555555443
No 490
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=30.54 E-value=1.1e+03 Score=28.86 Aligned_cols=189 Identities=15% Similarity=0.137 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHH-HhcCCHHHHH
Q 001966 734 LEQALELFRDMLEKGLASTL-SFNTLIEFLCISNKLQEAHQLLDAMLEEQ----VNPNHDTYTTLINQY-CKVQNMEKAK 807 (989)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~-~~~g~~~~A~ 807 (989)
-+++.++|+.+.+..|.... ....+.....+.....+-.+-++++++.- -..|.... ...| ++.....+|.
T Consensus 1091 ~e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL---~~y~~~k~D~r~da~ 1167 (1304)
T KOG1114|consen 1091 DEEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEAL---ARYYALKEDTRPDAV 1167 (1304)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHH---HHHHhcccCCcchHH
Confidence 35588888888887773222 22233333222222222222222222110 01132222 2222 2334445577
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 001966 808 QLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK- 886 (989)
Q Consensus 808 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 886 (989)
.+-.+|.+ .-..++.++++.|. |+.-++.+..+ +.-|.. .+....+.-.+.|.+++.-
T Consensus 1168 klk~~me~--------qk~tli~AL~kKg~---a~ak~e~l~g~-~e~dae---------ee~s~ld~~~e~y~el~kw~ 1226 (1304)
T KOG1114|consen 1168 KLKKKMEK--------QKDTLIDALVKKGE---AFAKYEALKGH-KEQDAE---------EELSKLDSYNENYQELLKWL 1226 (1304)
T ss_pred HHHHHHHH--------HHHHHHHHHHHhhh---HHhhhhhhccc-ccccch---------hhhhhhhhHHHHHHHHHHHh
Confidence 77777764 34567777776553 22222222111 111221 1123344455555555543
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCccCHHhHHHHHHHHHhcCChhHHH
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGES-GFRLGFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
+.. |..+|..-..-+..+|++..|.+++.++++. +..+....+..++..+...|....|.
T Consensus 1227 d~~-dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~t 1287 (1304)
T KOG1114|consen 1227 DAS-DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLAT 1287 (1304)
T ss_pred hcC-CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhHH
Confidence 222 5566666666677889999999999998873 33345566777888888888765443
No 491
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.21 E-value=1.1e+02 Score=24.25 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=9.0
Q ss_pred hcCCHhHHHHHHHHHHh
Q 001966 834 RMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~ 850 (989)
..|+.++|+.+|++.+.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 34555555555555443
No 492
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.04 E-value=7.9e+02 Score=27.16 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHD 788 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~ 788 (989)
.+.+.|+..+.+|++.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 55666666666666665555433
No 493
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=29.81 E-value=3.9e+02 Score=23.56 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=28.5
Q ss_pred CChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHH
Q 001966 77 HNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEI 137 (989)
Q Consensus 77 ~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 137 (989)
+||..|..++......+ -+....+.|.+...--.+.++..++.. ....|.+.
T Consensus 3 nNp~IA~~~l~~l~~s~--------~~~~yld~lv~~~~sl~s~EvVn~L~~-~~~~p~ef 54 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--------NFKEYLDVLVSMDMSLHSMEVVNRLTT-SFSLPQEF 54 (126)
T ss_pred CcHHHHHHHHHHHcCCc--------hHHHHHHHHHcCCCchhHHHHHHHHHc-CCCCcHHH
Confidence 46666766666554322 133344555555556666677777666 34434333
No 494
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.77 E-value=2.3e+02 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=16.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
+..+.+.|+.-+|+++.++++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34566778888888888887765
No 495
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.62 E-value=89 Score=24.46 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=11.0
Q ss_pred ccCCHHHHHHHHHHHHH
Q 001966 904 KREEYSEALRLLNEMGE 920 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~ 920 (989)
..|++++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 35777777777766554
No 496
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.56 E-value=61 Score=28.53 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 001966 381 SGKMEKAREVLNEIIRMGIEPNSRTYTSLIQ 411 (989)
Q Consensus 381 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 411 (989)
.|.-.+|-.+|++|++.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34455566666666666655543 444444
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.50 E-value=2.2e+02 Score=28.75 Aligned_cols=61 Identities=15% Similarity=0.025 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----ccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGF-----RLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.....++..|.+.|++++|.++++.+...-. .+...+...+..++...|+.+....+--++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445678888999999999999988753211 112344556677777777777666554443
No 498
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.42 E-value=92 Score=31.92 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGN 364 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~ 364 (989)
.-|..-.+.||+++|+++++|..+.|+
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444555555555555555544443
No 499
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=29.30 E-value=4.2e+02 Score=29.91 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=39.4
Q ss_pred HHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 827 SLLNGYNRMG---NRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 827 ~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
.|+..+...| ++..|+..+-++.+ +.|... +-..| +.+|+..-+.... .....-|..++..
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeE--i~pt~~r~~~~~l---------~~~AI~sa~~~Y~---n~HvYPYty~gg~ 327 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEE--IDPTPGRPTPLEL---------FNEAISSARTYYN---NHHVYPYTYLGGY 327 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHH--HS--TTS--HHHH---------HHHHHHHHHHHCT---T--SHHHHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHh--hccCCCCCCHHHH---------HHHHHHHHHHHhc---CCccccceehhhH
Confidence 3455554444 56667777776666 444211 11111 2333333333322 1234456777777
Q ss_pred HHccCCHHHHHHHHHHHH
Q 001966 902 LCKREEYSEALRLLNEMG 919 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~ 919 (989)
|++.+++.+|+..|.++.
T Consensus 328 ~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 328 YYRHKRYREALRSWAEAA 345 (618)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888887776653
No 500
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=28.95 E-value=6.6e+02 Score=25.93 Aligned_cols=71 Identities=11% Similarity=0.231 Sum_probs=39.1
Q ss_pred HhcCChHHHHHHH-HHHHHCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCcCHhhHHHHHHHHHhcC
Q 001966 379 CKSGKMEKAREVL-NEIIRMGIEPNS----RTYTSLIQGYCRMRKMVSAFELLD-EMKKKNLVPSVFTYGVIIDGLCHCG 452 (989)
Q Consensus 379 ~~~g~~~~A~~~~-~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g 452 (989)
.+...+++..... ++|.+.++ |+. ..|+.++++-- +.+-.++.. +..+ ...+|..|+.++|..|
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave----WnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE----WNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh----hchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 3444556655544 45666654 554 35777766533 222222211 1111 2346888999999999
Q ss_pred CHHHHHH
Q 001966 453 DLRQINA 459 (989)
Q Consensus 453 ~~~~A~~ 459 (989)
+.+..+-
T Consensus 336 ~sEL~Ll 342 (412)
T KOG2297|consen 336 QSELELL 342 (412)
T ss_pred hHHHHHH
Confidence 8876543
Done!