Query 001966
Match_columns 989
No_of_seqs 815 out of 4728
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 06:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-39 3.6E-44 384.7 42.3 503 226-761 82-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-39 7.8E-44 381.8 42.9 521 379-973 64-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-28 9.4E-33 269.7 48.2 380 585-976 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-28 1.2E-32 268.8 48.2 382 550-942 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 3E-29 1E-33 280.3 25.0 203 248-450 10-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.9E-29 1.7E-33 278.5 24.8 189 228-416 26-223 (501)
7 1xi4_A Clathrin heavy chain; a 100.0 6.2E-21 2.1E-25 223.0 84.5 823 77-982 409-1375(1630)
8 1xi4_A Clathrin heavy chain; a 100.0 4E-21 1.4E-25 224.5 79.1 405 512-976 989-1415(1630)
9 2gw1_A Mitochondrial precursor 99.9 1.3E-24 4.5E-29 250.6 40.4 231 719-955 238-477 (514)
10 2gw1_A Mitochondrial precursor 99.9 7.5E-25 2.6E-29 252.6 38.4 461 473-953 6-501 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 2.9E-23 9.9E-28 234.7 41.7 370 576-981 24-444 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 4.8E-23 1.6E-27 232.9 41.5 389 524-946 8-444 (450)
13 3fp2_A TPR repeat-containing p 99.9 8.6E-23 2.9E-27 236.8 36.7 431 473-924 25-494 (537)
14 3fp2_A TPR repeat-containing p 99.9 3E-22 1E-26 232.1 40.7 428 509-956 26-491 (537)
15 3ieg_A DNAJ homolog subfamily 99.9 2.9E-20 9.9E-25 202.9 39.7 205 760-972 128-350 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 1.9E-20 6.4E-25 204.3 38.0 321 612-941 2-354 (359)
17 2xm6_A Protein corresponding t 99.9 2.3E-18 7.9E-23 195.9 51.9 378 528-937 27-450 (490)
18 3hym_B Cell division cycle pro 99.9 4.4E-20 1.5E-24 198.8 30.3 292 680-979 19-322 (330)
19 2xm6_A Protein corresponding t 99.9 1.7E-17 5.8E-22 188.8 52.9 380 563-974 27-452 (490)
20 3hym_B Cell division cycle pro 99.9 1.5E-19 5.2E-24 194.5 32.2 294 645-944 19-322 (330)
21 2ooe_A Cleavage stimulation fa 99.9 7.8E-18 2.7E-22 193.6 46.1 429 496-956 2-492 (530)
22 1fch_A Peroxisomal targeting s 99.8 9.3E-20 3.2E-24 199.7 23.9 260 685-953 66-356 (368)
23 1fch_A Peroxisomal targeting s 99.8 1.9E-19 6.4E-24 197.2 24.5 284 694-987 36-355 (368)
24 2ooe_A Cleavage stimulation fa 99.8 2.9E-17 9.8E-22 188.9 43.6 426 531-988 2-489 (530)
25 4eqf_A PEX5-related protein; a 99.8 1.2E-19 4.2E-24 198.3 22.0 262 717-987 64-352 (365)
26 4g1t_A Interferon-induced prot 99.8 5.8E-17 2E-21 184.1 38.3 380 543-956 51-459 (472)
27 4g1t_A Interferon-induced prot 99.8 4.4E-17 1.5E-21 185.1 35.7 395 507-934 50-471 (472)
28 4eqf_A PEX5-related protein; a 99.8 2.9E-18 9.8E-23 187.4 24.2 265 683-952 65-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 7E-18 2.4E-22 181.2 26.5 271 687-987 25-311 (327)
30 3cv0_A Peroxisome targeting si 99.8 5.7E-18 1.9E-22 181.9 24.9 280 647-954 20-313 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.7E-22 173.1 26.1 258 693-967 9-273 (291)
32 1b89_A Protein (clathrin heavy 99.8 2.4E-17 8.1E-22 174.1 25.1 222 155-415 32-253 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 4.1E-17 1.4E-21 170.2 25.6 256 657-930 8-272 (291)
34 1b89_A Protein (clathrin heavy 99.8 5.4E-17 1.8E-21 171.4 24.9 220 240-500 15-234 (449)
35 3spa_A Mtrpol, DNA-directed RN 99.8 8.9E-19 3E-23 199.0 9.1 154 224-382 123-286 (1134)
36 3uq3_A Heat shock protein STI1 99.7 2.9E-16 1E-20 161.9 26.3 225 718-956 5-236 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.7 7.3E-18 2.5E-22 191.5 12.9 121 261-381 125-249 (1134)
38 2pl2_A Hypothetical conserved 99.7 1.2E-16 4.2E-21 159.0 20.3 193 752-951 5-209 (217)
39 2h6f_A Protein farnesyltransfe 99.7 3.2E-16 1.1E-20 168.8 24.7 247 718-973 97-364 (382)
40 2pl2_A Hypothetical conserved 99.7 2.8E-16 9.6E-21 156.4 21.5 197 784-988 2-211 (217)
41 3uq3_A Heat shock protein STI1 99.7 7.7E-16 2.6E-20 158.7 24.5 237 683-935 5-255 (258)
42 3u4t_A TPR repeat-containing p 99.7 1.1E-15 3.7E-20 159.0 24.9 249 719-973 4-266 (272)
43 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-15 5.4E-20 169.3 26.9 346 549-922 9-388 (452)
44 2h6f_A Protein farnesyltransfe 99.7 2.6E-15 8.9E-20 161.7 26.4 250 683-940 97-366 (382)
45 3e4b_A ALGK; tetratricopeptide 99.7 4.6E-15 1.6E-19 165.5 26.4 187 754-956 178-387 (452)
46 1ouv_A Conserved hypothetical 99.7 8.1E-14 2.8E-18 144.8 33.0 224 717-957 5-252 (273)
47 3u4t_A TPR repeat-containing p 99.7 4.9E-15 1.7E-19 154.1 22.3 249 686-940 6-268 (272)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.4E-15 1.5E-19 154.7 20.5 245 697-950 19-269 (275)
49 2ho1_A Type 4 fimbrial biogene 99.6 3.9E-14 1.3E-18 145.2 26.4 205 753-963 38-243 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.6E-15 1.6E-19 154.6 19.3 246 730-985 17-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.6 6.4E-15 2.2E-19 150.2 19.9 208 754-969 25-234 (243)
52 2vq2_A PILW, putative fimbrial 99.6 5.6E-14 1.9E-18 141.1 26.6 208 751-964 7-217 (225)
53 1ouv_A Conserved hypothetical 99.6 2.5E-13 8.7E-18 141.0 31.8 221 750-988 4-248 (273)
54 2q7f_A YRRB protein; TPR, prot 99.6 9.6E-15 3.3E-19 148.8 20.2 220 716-941 21-241 (243)
55 2ho1_A Type 4 fimbrial biogene 99.6 7.6E-14 2.6E-18 143.0 26.7 208 718-930 37-246 (252)
56 3sf4_A G-protein-signaling mod 99.6 7E-15 2.4E-19 163.1 19.4 271 647-920 8-335 (406)
57 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.5E-18 137.7 26.6 213 716-932 6-221 (225)
58 4a1s_A PINS, partner of inscut 99.6 1.6E-14 5.4E-19 160.6 20.4 265 689-956 54-372 (411)
59 3vtx_A MAMA; tetratricopeptide 99.6 7.1E-14 2.4E-18 135.2 21.4 170 786-962 4-174 (184)
60 4e6h_A MRNA 3'-END-processing 99.6 2.4E-11 8.3E-16 139.5 45.1 454 490-972 49-584 (679)
61 4abn_A Tetratricopeptide repea 99.6 3.1E-14 1.1E-18 159.9 21.0 215 733-953 83-318 (474)
62 3sf4_A G-protein-signaling mod 99.6 1.9E-14 6.6E-19 159.6 18.4 303 680-983 6-368 (406)
63 4a1s_A PINS, partner of inscut 99.6 1.7E-14 5.8E-19 160.3 17.8 270 719-988 49-369 (411)
64 4abn_A Tetratricopeptide repea 99.6 2E-14 7E-19 161.4 18.6 213 698-917 83-317 (474)
65 3ro2_A PINS homolog, G-protein 99.6 4.9E-14 1.7E-18 151.6 20.0 265 689-956 11-332 (338)
66 2ond_A Cleavage stimulation fa 99.6 8.2E-13 2.8E-17 139.5 27.9 220 735-961 33-273 (308)
67 4e6h_A MRNA 3'-END-processing 99.6 5.7E-11 1.9E-15 136.4 43.6 443 455-924 49-573 (679)
68 3vtx_A MAMA; tetratricopeptide 99.5 1.9E-13 6.4E-18 132.2 19.2 163 820-988 3-167 (184)
69 3ro2_A PINS homolog, G-protein 99.5 5E-14 1.7E-18 151.5 16.7 270 719-988 6-329 (338)
70 3ulq_A Response regulator aspa 99.5 7E-13 2.4E-17 145.4 23.3 230 724-955 109-367 (383)
71 4gyw_A UDP-N-acetylglucosamine 99.5 2.5E-13 8.6E-18 158.1 18.4 168 786-961 8-177 (723)
72 2ond_A Cleavage stimulation fa 99.5 6.1E-12 2.1E-16 132.9 27.6 219 700-924 33-273 (308)
73 3ulq_A Response regulator aspa 99.5 1.4E-12 4.7E-17 143.0 23.4 228 756-988 107-365 (383)
74 3nf1_A KLC 1, kinesin light ch 99.5 1E-13 3.6E-18 147.2 13.4 238 717-955 26-306 (311)
75 4gyw_A UDP-N-acetylglucosamine 99.5 6E-13 2E-17 154.9 20.4 168 750-923 7-176 (723)
76 4i17_A Hypothetical protein; T 99.4 1E-11 3.5E-16 124.7 22.2 207 750-970 5-222 (228)
77 3as5_A MAMA; tetratricopeptide 99.4 3.9E-12 1.3E-16 123.0 17.5 168 788-962 9-177 (186)
78 3nf1_A KLC 1, kinesin light ch 99.4 7E-13 2.4E-17 140.7 13.3 236 751-988 26-304 (311)
79 4i17_A Hypothetical protein; T 99.4 1.7E-11 5.9E-16 123.0 21.6 210 715-937 4-224 (228)
80 3q15_A PSP28, response regulat 99.4 3.4E-11 1.2E-15 131.5 25.5 231 723-955 106-364 (378)
81 1hz4_A MALT regulatory protein 99.4 1.6E-10 5.5E-15 126.0 29.4 264 692-955 23-321 (373)
82 3q15_A PSP28, response regulat 99.4 1.5E-10 5E-15 126.5 28.0 230 755-988 104-362 (378)
83 1hz4_A MALT regulatory protein 99.4 8.6E-11 3E-15 128.2 25.8 266 722-987 18-318 (373)
84 1qqe_A Vesicular transport pro 99.3 2.3E-11 7.9E-16 127.1 18.9 221 734-972 33-284 (292)
85 3as5_A MAMA; tetratricopeptide 99.3 2.4E-11 8.3E-16 117.3 16.9 161 822-988 8-170 (186)
86 3mv2_B Coatomer subunit epsilo 99.3 6E-10 2.1E-14 112.8 27.3 199 737-954 85-303 (310)
87 4ga2_A E3 SUMO-protein ligase 99.3 3.5E-12 1.2E-16 117.8 10.2 144 828-977 3-149 (150)
88 1qqe_A Vesicular transport pro 99.3 5.3E-11 1.8E-15 124.3 19.7 229 736-988 3-266 (292)
89 3dra_A Protein farnesyltransfe 99.3 3.7E-10 1.3E-14 116.1 25.4 230 734-970 49-301 (306)
90 3qky_A Outer membrane assembly 99.3 3.8E-11 1.3E-15 123.4 17.4 210 750-982 13-252 (261)
91 3edt_B KLC 2, kinesin light ch 99.3 2.9E-11 9.8E-16 126.1 16.2 225 730-955 13-280 (283)
92 4ga2_A E3 SUMO-protein ligase 99.3 4.9E-12 1.7E-16 116.8 9.0 144 793-942 3-149 (150)
93 3urz_A Uncharacterized protein 99.3 5.6E-11 1.9E-15 117.0 16.8 137 827-970 59-198 (208)
94 3edt_B KLC 2, kinesin light ch 99.3 3.1E-11 1.1E-15 125.8 15.2 225 764-988 13-278 (283)
95 2pzi_A Probable serine/threoni 99.3 3E-11 1E-15 142.0 15.5 173 763-942 402-583 (681)
96 3qky_A Outer membrane assembly 99.3 1.4E-10 4.9E-15 119.1 18.4 211 715-946 12-251 (261)
97 3urz_A Uncharacterized protein 99.3 5.4E-11 1.9E-15 117.1 14.5 155 828-988 10-183 (208)
98 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.4E-10 8.1E-15 114.2 18.9 187 752-961 4-216 (225)
99 3dra_A Protein farnesyltransfe 99.2 3.4E-09 1.2E-13 108.9 27.1 232 698-935 48-301 (306)
100 2pzi_A Probable serine/threoni 99.2 6.3E-11 2.2E-15 139.2 15.6 188 729-922 402-603 (681)
101 3gyz_A Chaperone protein IPGC; 99.2 1.1E-10 3.8E-15 106.9 13.1 107 853-963 31-138 (151)
102 3mv2_B Coatomer subunit epsilo 99.2 1.3E-09 4.4E-14 110.5 21.1 190 771-970 85-294 (310)
103 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-10 1.1E-14 113.2 16.2 177 788-988 5-210 (225)
104 4gco_A Protein STI-1; structur 99.2 2.5E-10 8.7E-15 101.4 13.2 114 853-970 8-123 (126)
105 3qou_A Protein YBBN; thioredox 99.2 4.6E-10 1.6E-14 116.7 17.1 166 786-955 116-283 (287)
106 2fo7_A Synthetic consensus TPR 99.2 7.8E-10 2.7E-14 100.0 16.4 129 824-956 3-132 (136)
107 2r5s_A Uncharacterized protein 99.2 2.4E-10 8.4E-15 109.0 13.3 162 790-955 9-172 (176)
108 3qou_A Protein YBBN; thioredox 99.1 3.2E-10 1.1E-14 117.8 14.0 163 819-987 114-280 (287)
109 2r5s_A Uncharacterized protein 99.1 1.9E-10 6.5E-15 109.8 11.1 158 824-988 8-170 (176)
110 2ifu_A Gamma-SNAP; membrane fu 99.1 7.6E-10 2.6E-14 116.5 16.8 223 696-948 4-253 (307)
111 3rjv_A Putative SEL1 repeat pr 99.1 3.8E-09 1.3E-13 104.0 20.5 176 770-957 4-198 (212)
112 4gco_A Protein STI-1; structur 99.1 8.1E-10 2.8E-14 98.1 13.4 116 818-937 8-125 (126)
113 2vsy_A XCC0866; transferase, g 99.1 1.3E-09 4.3E-14 126.2 17.7 163 766-934 3-169 (568)
114 3rjv_A Putative SEL1 repeat pr 99.1 2.1E-08 7.1E-13 98.7 23.3 175 736-923 4-199 (212)
115 2fo7_A Synthetic consensus TPR 99.1 3.8E-09 1.3E-13 95.4 16.5 132 789-924 3-135 (136)
116 3q7a_A Farnesyltransferase alp 99.1 3.1E-08 1.1E-12 102.6 24.5 224 732-961 68-335 (349)
117 2ifu_A Gamma-SNAP; membrane fu 99.0 2.7E-09 9.1E-14 112.3 15.6 222 661-913 4-253 (307)
118 2vgx_A Chaperone SYCD; alterna 99.0 9.4E-10 3.2E-14 101.0 10.4 113 843-961 8-121 (148)
119 2vsy_A XCC0866; transferase, g 99.0 2.1E-09 7E-14 124.4 15.6 163 800-969 2-169 (568)
120 2uy1_A Cleavage stimulation fa 99.0 2.1E-07 7.2E-12 103.9 31.0 379 520-955 6-412 (493)
121 3dss_A Geranylgeranyl transfer 99.0 9.8E-08 3.4E-12 98.5 25.6 219 736-962 48-308 (331)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.0 9.9E-09 3.4E-13 101.4 17.5 129 789-924 8-153 (213)
123 2uy1_A Cleavage stimulation fa 99.0 1.3E-06 4.4E-11 97.6 34.5 46 596-642 197-242 (493)
124 3q7a_A Farnesyltransferase alp 98.9 3.1E-07 1E-11 95.2 26.2 221 696-921 67-331 (349)
125 2xcb_A PCRH, regulatory protei 98.9 3.7E-09 1.3E-13 96.5 10.6 112 844-961 6-118 (142)
126 4f3v_A ESX-1 secretion system 98.9 1.4E-08 4.8E-13 101.4 15.3 131 826-961 106-240 (282)
127 4f3v_A ESX-1 secretion system 98.9 3.1E-08 1E-12 99.0 17.4 201 730-935 18-249 (282)
128 3gyz_A Chaperone protein IPGC; 98.9 4.8E-09 1.6E-13 95.9 10.6 104 818-924 31-136 (151)
129 1a17_A Serine/threonine protei 98.9 1.9E-08 6.6E-13 94.6 15.3 129 823-955 14-145 (166)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.3E-08 1.8E-12 96.1 18.4 126 755-887 9-151 (213)
131 2lni_A Stress-induced-phosphop 98.9 2E-08 6.9E-13 90.3 14.0 95 859-955 18-112 (133)
132 1p5q_A FKBP52, FK506-binding p 98.9 1.4E-08 4.7E-13 108.0 14.8 150 800-955 126-293 (336)
133 3dss_A Geranylgeranyl transfer 98.9 8.3E-07 2.9E-11 91.6 27.4 233 695-934 41-316 (331)
134 1p5q_A FKBP52, FK506-binding p 98.9 1.2E-09 4.1E-14 116.2 6.4 150 834-988 125-291 (336)
135 2e2e_A Formate-dependent nitri 98.9 8.9E-09 3E-13 98.2 11.9 120 833-956 21-144 (177)
136 3u3w_A Transcriptional activat 98.9 7.2E-08 2.5E-12 100.6 19.4 163 793-955 81-265 (293)
137 2vyi_A SGTA protein; chaperone 98.9 1.9E-08 6.4E-13 90.1 13.0 117 823-943 13-130 (131)
138 2qfc_A PLCR protein; TPR, HTH, 98.9 2.1E-07 7.1E-12 97.1 22.6 161 824-986 77-261 (293)
139 3u3w_A Transcriptional activat 98.9 1.6E-07 5.5E-12 97.9 21.2 204 775-987 34-262 (293)
140 4gcn_A Protein STI-1; structur 98.8 2.2E-08 7.5E-13 89.0 12.3 106 859-967 10-121 (127)
141 2lni_A Stress-induced-phosphop 98.8 4.5E-08 1.5E-12 87.9 14.5 120 819-942 13-133 (133)
142 2vgx_A Chaperone SYCD; alterna 98.8 6.1E-09 2.1E-13 95.5 8.7 111 809-924 9-121 (148)
143 1na0_A Designed protein CTPR3; 98.8 5.5E-08 1.9E-12 86.1 14.2 112 824-939 11-123 (125)
144 3upv_A Heat shock protein STI1 98.8 4E-08 1.4E-12 87.4 13.2 96 859-956 6-101 (126)
145 1a17_A Serine/threonine protei 98.8 4E-08 1.4E-12 92.4 13.9 126 859-988 15-143 (166)
146 2qfc_A PLCR protein; TPR, HTH, 98.8 2.3E-07 8E-12 96.7 20.7 165 791-955 79-265 (293)
147 3upv_A Heat shock protein STI1 98.8 4.2E-08 1.4E-12 87.3 12.9 112 822-937 4-122 (126)
148 2c2l_A CHIP, carboxy terminus 98.8 2.5E-08 8.4E-13 103.1 12.6 193 752-955 4-198 (281)
149 2c2l_A CHIP, carboxy terminus 98.8 1.2E-08 4E-13 105.5 10.0 191 786-988 3-196 (281)
150 2fbn_A 70 kDa peptidylprolyl i 98.8 6.5E-09 2.2E-13 101.3 7.3 154 797-955 14-185 (198)
151 2vyi_A SGTA protein; chaperone 98.8 6.4E-08 2.2E-12 86.5 13.0 117 858-978 13-130 (131)
152 1hxi_A PEX5, peroxisome target 98.8 4.1E-08 1.4E-12 86.3 10.8 99 859-961 19-117 (121)
153 3gw4_A Uncharacterized protein 98.8 8E-08 2.7E-12 93.9 14.2 156 799-955 4-175 (203)
154 2fbn_A 70 kDa peptidylprolyl i 98.8 7E-09 2.4E-13 101.1 6.4 148 829-982 11-176 (198)
155 2e2e_A Formate-dependent nitri 98.8 3.2E-08 1.1E-12 94.4 10.7 123 798-924 21-147 (177)
156 1elw_A TPR1-domain of HOP; HOP 98.7 1.8E-07 6E-12 81.8 14.4 95 859-955 6-100 (118)
157 1na0_A Designed protein CTPR3; 98.7 1.3E-07 4.3E-12 83.7 13.6 114 858-975 10-124 (125)
158 3sz7_A HSC70 cochaperone (SGT) 98.7 1E-07 3.6E-12 89.3 13.4 106 822-931 11-117 (164)
159 2xcb_A PCRH, regulatory protei 98.7 4.3E-08 1.5E-12 89.3 10.3 104 822-929 18-122 (142)
160 3q49_B STIP1 homology and U bo 98.7 7.4E-08 2.5E-12 87.1 11.7 99 856-956 8-106 (137)
161 3sz7_A HSC70 cochaperone (SGT) 98.7 8.2E-08 2.8E-12 90.1 12.2 99 859-961 13-111 (164)
162 3gw4_A Uncharacterized protein 98.7 1.1E-07 3.6E-12 93.0 13.0 153 833-987 3-172 (203)
163 1elw_A TPR1-domain of HOP; HOP 98.7 2.4E-07 8.4E-12 80.8 14.0 113 821-937 3-116 (118)
164 2dba_A Smooth muscle cell asso 98.7 3.6E-07 1.2E-11 83.8 15.5 95 859-955 30-127 (148)
165 4gcn_A Protein STI-1; structur 98.7 1.5E-07 5E-12 83.6 12.2 101 822-924 8-115 (127)
166 1elr_A TPR2A-domain of HOP; HO 98.6 1.3E-07 4.4E-12 84.5 10.3 110 859-972 6-122 (131)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2E-08 6.7E-13 111.8 5.8 152 799-956 246-415 (457)
168 1hxi_A PEX5, peroxisome target 98.6 1.6E-07 5.4E-12 82.5 10.1 98 824-924 19-117 (121)
169 2dba_A Smooth muscle cell asso 98.6 6.1E-07 2.1E-11 82.2 14.5 117 819-939 25-145 (148)
170 1dce_A Protein (RAB geranylger 98.6 9.6E-07 3.3E-11 100.2 18.6 170 802-979 44-243 (567)
171 3q49_B STIP1 homology and U bo 98.6 3.6E-07 1.2E-11 82.5 12.3 103 819-924 6-109 (137)
172 3rkv_A Putative peptidylprolyl 98.6 3E-07 1E-11 85.9 12.0 98 824-924 13-129 (162)
173 2xev_A YBGF; tetratricopeptide 98.6 6.8E-07 2.3E-11 79.6 13.9 93 861-955 6-104 (129)
174 1dce_A Protein (RAB geranylger 98.6 9.9E-07 3.4E-11 100.1 18.4 171 769-945 46-244 (567)
175 2hr2_A Hypothetical protein; a 98.6 2.7E-07 9.3E-12 82.8 10.8 98 861-961 15-134 (159)
176 2xev_A YBGF; tetratricopeptide 98.6 7E-07 2.4E-11 79.5 13.1 106 825-934 5-117 (129)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3.3E-07 1.1E-11 101.9 13.1 131 786-921 267-415 (457)
178 3rkv_A Putative peptidylprolyl 98.5 1.8E-07 6.2E-12 87.4 9.1 110 859-972 13-142 (162)
179 2kck_A TPR repeat; tetratricop 98.5 4.8E-07 1.6E-11 78.1 11.1 97 859-956 8-106 (112)
180 2hr2_A Hypothetical protein; a 98.5 1.9E-07 6.6E-12 83.8 8.5 98 824-924 13-134 (159)
181 3k9i_A BH0479 protein; putativ 98.5 1.6E-07 5.4E-12 82.1 7.9 86 836-924 4-93 (117)
182 2if4_A ATFKBP42; FKBP-like, al 98.5 1.6E-07 5.3E-12 99.8 9.1 151 788-961 180-331 (338)
183 1wao_1 Serine/threonine protei 98.5 2.5E-07 8.4E-12 103.3 9.5 122 826-951 10-134 (477)
184 3k9i_A BH0479 protein; putativ 98.5 1.8E-07 6.1E-12 81.7 6.5 92 869-964 2-96 (117)
185 3ro3_A PINS homolog, G-protein 98.5 8.2E-07 2.8E-11 82.7 11.3 130 824-955 11-157 (164)
186 1ihg_A Cyclophilin 40; ppiase 98.5 5.5E-07 1.9E-11 96.6 11.1 89 891-982 272-361 (370)
187 1elr_A TPR2A-domain of HOP; HO 98.5 6.7E-07 2.3E-11 79.7 10.0 112 823-938 5-123 (131)
188 1wao_1 Serine/threonine protei 98.4 3.5E-07 1.2E-11 102.0 9.7 123 860-986 9-134 (477)
189 1ihg_A Cyclophilin 40; ppiase 98.4 1.5E-06 5.1E-11 93.2 13.5 94 854-949 269-363 (370)
190 2kck_A TPR repeat; tetratricop 98.4 1.2E-06 4.2E-11 75.4 10.3 101 822-924 6-109 (112)
191 4b4t_Q 26S proteasome regulato 98.4 1.3E-05 4.5E-10 88.9 20.5 197 725-921 11-245 (434)
192 2if4_A ATFKBP42; FKBP-like, al 98.4 7.2E-07 2.5E-11 94.7 9.4 152 751-924 178-331 (338)
193 1zu2_A Mitochondrial import re 98.4 6.8E-07 2.3E-11 80.0 7.3 89 871-963 16-125 (158)
194 4b4t_Q 26S proteasome regulato 98.3 2.3E-05 8E-10 86.8 21.6 197 690-886 11-245 (434)
195 1klx_A Cysteine rich protein B 98.3 1.1E-05 3.7E-10 72.4 14.2 111 836-957 9-127 (138)
196 3ro3_A PINS homolog, G-protein 98.3 3.2E-06 1.1E-10 78.6 11.1 134 789-922 11-159 (164)
197 2l6j_A TPR repeat-containing p 98.3 9.7E-07 3.3E-11 76.0 6.9 88 859-948 6-99 (111)
198 2l6j_A TPR repeat-containing p 98.2 7.1E-07 2.4E-11 76.9 4.9 95 891-988 3-104 (111)
199 1na3_A Designed protein CTPR2; 98.1 1.7E-05 5.7E-10 65.1 10.9 80 859-940 11-90 (91)
200 1klx_A Cysteine rich protein B 98.1 4.9E-05 1.7E-09 68.1 14.8 111 801-922 9-127 (138)
201 1zu2_A Mitochondrial import re 98.1 4.3E-06 1.5E-10 74.9 7.2 88 834-924 14-123 (158)
202 2kat_A Uncharacterized protein 98.1 1.1E-05 3.7E-10 69.9 9.8 78 876-955 4-81 (115)
203 2kat_A Uncharacterized protein 98.1 1E-05 3.6E-10 70.0 9.2 83 839-924 2-85 (115)
204 3n71_A Histone lysine methyltr 98.1 7.4E-05 2.5E-09 82.4 17.3 123 832-956 319-464 (490)
205 1na3_A Designed protein CTPR2; 98.0 2.1E-05 7.2E-10 64.4 8.2 82 891-975 8-90 (91)
206 3u64_A Protein TP_0956; tetrat 97.9 0.00045 1.5E-08 68.0 17.7 107 837-953 178-295 (301)
207 3ma5_A Tetratricopeptide repea 97.9 2.2E-05 7.4E-10 65.8 7.1 64 891-955 6-69 (100)
208 3n71_A Histone lysine methyltr 97.9 0.00011 3.8E-09 81.0 14.4 124 797-921 319-464 (490)
209 3ma5_A Tetratricopeptide repea 97.8 4.3E-05 1.5E-09 64.0 7.7 69 854-923 3-72 (100)
210 2kc7_A BFR218_protein; tetratr 97.7 4.9E-05 1.7E-09 63.5 5.8 81 863-953 6-87 (99)
211 3bee_A Putative YFRE protein; 97.5 0.00037 1.3E-08 56.8 8.9 69 890-961 4-75 (93)
212 2kc7_A BFR218_protein; tetratr 97.5 0.00023 7.9E-09 59.2 7.9 66 897-965 5-72 (99)
213 3ly7_A Transcriptional activat 97.5 0.0029 9.8E-08 65.3 16.8 144 819-969 191-350 (372)
214 3u64_A Protein TP_0956; tetrat 97.5 0.0031 1.1E-07 62.1 15.7 87 873-959 179-272 (301)
215 1pc2_A Mitochondria fission pr 97.4 0.0011 3.6E-08 58.6 10.3 85 874-961 15-103 (152)
216 3ly7_A Transcriptional activat 97.3 0.0017 5.6E-08 67.1 12.6 154 715-898 191-349 (372)
217 3qww_A SET and MYND domain-con 97.3 0.0013 4.5E-08 71.2 12.2 84 870-955 311-410 (433)
218 1pc2_A Mitochondria fission pr 97.2 0.0017 6E-08 57.2 9.7 86 838-924 14-103 (152)
219 3qww_A SET and MYND domain-con 97.1 0.0028 9.7E-08 68.5 12.0 85 835-920 311-410 (433)
220 4ady_A RPN2, 26S proteasome re 97.0 0.84 2.9E-05 53.3 37.9 308 658-978 384-722 (963)
221 3qwp_A SET and MYND domain-con 97.0 0.013 4.3E-07 63.6 16.2 87 832-919 297-398 (429)
222 3bee_A Putative YFRE protein; 96.9 0.004 1.4E-07 50.5 9.0 66 858-924 7-75 (93)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0071 2.4E-07 50.5 10.3 71 859-930 7-83 (104)
224 3lvg_A Clathrin heavy chain 1; 96.7 3.2E-06 1.1E-10 87.8 -13.7 251 148-423 47-324 (624)
225 3qwp_A SET and MYND domain-con 96.7 0.013 4.3E-07 63.6 13.1 92 794-885 294-399 (429)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.064 2.2E-06 64.5 19.9 44 799-848 664-707 (814)
227 2v5f_A Prolyl 4-hydroxylase su 96.5 0.017 5.8E-07 48.2 9.7 72 890-963 3-80 (104)
228 1nzn_A CGI-135 protein, fissio 96.4 0.02 6.9E-07 48.5 9.8 70 855-924 33-106 (126)
229 1nzn_A CGI-135 protein, fissio 96.2 0.029 1E-06 47.5 9.7 90 871-963 15-108 (126)
230 3mkq_A Coatomer beta'-subunit; 96.2 0.18 6.1E-06 60.6 20.8 45 694-744 663-707 (814)
231 4ady_A RPN2, 26S proteasome re 96.2 3 0.0001 48.9 48.7 310 622-942 383-721 (963)
232 4h7y_A Dual specificity protei 95.9 0.018 6.3E-07 49.7 7.1 50 906-956 74-123 (161)
233 3lvg_A Clathrin heavy chain 1; 95.9 1.5E-05 5.2E-10 82.9 -14.1 115 190-322 54-168 (624)
234 4h7y_A Dual specificity protei 95.9 0.099 3.4E-06 45.2 11.3 103 821-925 12-127 (161)
235 3o48_A Mitochondria fission 1 95.0 0.27 9.2E-06 41.7 10.9 73 888-962 36-111 (134)
236 1qsa_A Protein (soluble lytic 94.9 4.9 0.00017 45.2 24.6 116 801-920 228-347 (618)
237 3ffl_A Anaphase-promoting comp 94.8 0.2 6.9E-06 44.5 10.2 113 828-953 26-148 (167)
238 3ffl_A Anaphase-promoting comp 94.8 0.16 5.5E-06 45.1 9.4 134 790-938 23-166 (167)
239 3mkq_B Coatomer subunit alpha; 94.7 0.46 1.6E-05 43.0 12.6 102 164-289 14-115 (177)
240 3mkq_B Coatomer subunit alpha; 94.7 1.6 5.6E-05 39.5 16.1 100 693-812 15-114 (177)
241 1y8m_A FIS1; mitochondria, unk 94.7 0.61 2.1E-05 40.2 12.5 70 855-924 37-109 (144)
242 1y8m_A FIS1; mitochondria, unk 94.6 0.89 3E-05 39.1 13.3 72 889-962 36-110 (144)
243 3o48_A Mitochondria fission 1 94.6 0.39 1.3E-05 40.7 10.9 72 853-924 36-110 (134)
244 1wy6_A Hypothetical protein ST 93.9 2.6 8.9E-05 35.7 14.0 48 240-290 19-66 (172)
245 4b4t_P 26S proteasome regulato 93.8 3.2 0.00011 44.9 19.4 50 662-711 30-84 (445)
246 4gns_B Protein CSD3, chitin bi 93.5 0.26 8.8E-06 56.6 10.5 53 900-953 345-397 (754)
247 1qsa_A Protein (soluble lytic 93.2 13 0.00046 41.7 34.7 330 511-885 10-347 (618)
248 4gns_B Protein CSD3, chitin bi 91.7 0.62 2.1E-05 53.5 10.5 57 930-988 340-397 (754)
249 4b4t_P 26S proteasome regulato 91.4 15 0.0005 39.6 20.6 189 697-885 30-246 (445)
250 3txn_A 26S proteasome regulato 91.3 16 0.00055 38.3 21.7 168 683-850 19-209 (394)
251 2wpv_A GET4, UPF0363 protein Y 90.9 14 0.00049 37.1 20.2 80 472-570 133-215 (312)
252 1wy6_A Hypothetical protein ST 90.4 7.6 0.00026 32.9 17.6 140 763-924 18-157 (172)
253 4fhn_B Nucleoporin NUP120; pro 89.1 7.3 0.00025 48.2 17.7 145 154-316 841-989 (1139)
254 3txn_A 26S proteasome regulato 87.9 29 0.00099 36.3 22.5 234 718-953 19-281 (394)
255 1zbp_A Hypothetical protein VP 87.3 5.1 0.00018 38.9 11.4 57 867-924 7-63 (273)
256 3lpz_A GET4 (YOR164C homolog); 87.0 28 0.00095 35.3 22.2 109 338-461 40-159 (336)
257 2ff4_A Probable regulatory pro 86.9 2.3 7.8E-05 45.1 9.9 54 864-918 178-231 (388)
258 4b4t_S RPN3, 26S proteasome re 86.4 2.1 7.3E-05 46.1 9.1 66 190-257 231-299 (523)
259 4fhn_B Nucleoporin NUP120; pro 85.4 6.6 0.00023 48.5 14.3 46 76-128 825-870 (1139)
260 2ff4_A Probable regulatory pro 83.8 3.9 0.00013 43.3 9.8 67 723-789 176-247 (388)
261 1zbp_A Hypothetical protein VP 83.3 2.8 9.7E-05 40.7 7.5 62 900-964 5-66 (273)
262 3lpz_A GET4 (YOR164C homolog); 79.4 56 0.0019 33.0 23.0 81 296-395 134-214 (336)
263 3ltm_A Alpha-REP4; protein eng 78.7 43 0.0015 31.3 18.0 59 891-954 125-183 (211)
264 1v54_E Cytochrome C oxidase po 78.5 22 0.00075 28.4 9.5 62 698-759 25-86 (109)
265 2wpv_A GET4, UPF0363 protein Y 77.5 62 0.0021 32.5 25.0 165 338-536 38-216 (312)
266 4b4t_R RPN7, 26S proteasome re 75.7 15 0.00053 39.3 11.4 97 754-850 133-236 (429)
267 1v54_E Cytochrome C oxidase po 75.6 9.9 0.00034 30.3 6.9 76 157-236 10-87 (109)
268 2p58_C Putative type III secre 75.1 20 0.00067 28.4 8.3 78 313-398 22-99 (116)
269 2uwj_G Type III export protein 73.0 19 0.00063 28.5 7.7 79 312-398 20-98 (115)
270 4b4t_R RPN7, 26S proteasome re 71.8 18 0.00063 38.7 10.8 98 789-886 133-237 (429)
271 3esl_A Checkpoint serine/threo 69.0 25 0.00086 32.4 9.2 53 838-890 95-148 (202)
272 2y69_E Cytochrome C oxidase su 68.6 44 0.0015 28.3 9.5 62 698-759 68-129 (152)
273 3ltm_A Alpha-REP4; protein eng 65.3 87 0.003 29.0 18.6 123 786-921 63-185 (211)
274 2p58_C Putative type III secre 64.8 38 0.0013 26.9 7.9 47 797-849 50-96 (116)
275 2y69_E Cytochrome C oxidase su 63.4 43 0.0015 28.4 8.5 77 156-236 52-130 (152)
276 4b4t_S RPN3, 26S proteasome re 62.5 37 0.0013 36.7 10.4 64 155-218 231-298 (523)
277 3esl_A Checkpoint serine/threo 62.1 58 0.002 30.0 10.2 56 800-855 92-148 (202)
278 2uwj_G Type III export protein 61.2 36 0.0012 27.0 7.2 48 797-850 49-96 (115)
279 3mv2_A Coatomer subunit alpha; 60.8 1.1E+02 0.0038 30.6 12.7 67 840-921 188-256 (325)
280 4a1g_A Mitotic checkpoint seri 59.8 53 0.0018 28.7 9.1 49 841-889 84-133 (152)
281 2qx5_A Nucleoporin NIC96; mRNA 55.9 30 0.001 39.0 8.8 23 160-182 448-470 (661)
282 1k1a_A B-cell lymphoma 3-encod 55.8 44 0.0015 31.9 9.4 25 341-365 14-38 (241)
283 2wvi_A Mitotic checkpoint seri 53.3 70 0.0024 28.4 8.9 51 841-891 79-130 (164)
284 4a1g_A Mitotic checkpoint seri 48.1 1.1E+02 0.0036 26.8 9.1 52 874-925 82-134 (152)
285 3eu9_A Huntingtin-interacting 46.4 36 0.0012 32.4 6.9 7 378-384 116-122 (240)
286 2qx5_A Nucleoporin NIC96; mRNA 45.2 3.8E+02 0.013 30.2 19.1 25 546-570 155-179 (661)
287 3mv2_A Coatomer subunit alpha; 44.3 2.6E+02 0.0088 28.0 15.0 33 265-297 209-241 (325)
288 2wvi_A Mitotic checkpoint seri 43.2 1.7E+02 0.0058 25.9 9.8 55 804-858 77-132 (164)
289 1wdy_A 2-5A-dependent ribonucl 43.1 76 0.0026 31.0 9.0 10 236-245 10-19 (285)
290 1k1a_A B-cell lymphoma 3-encod 40.9 66 0.0023 30.5 7.9 18 375-392 83-100 (241)
291 3eiq_C Programmed cell death p 39.4 2.1E+02 0.007 29.4 11.2 25 441-465 57-81 (358)
292 3ax2_A Mitochondrial import re 39.0 72 0.0025 23.7 5.6 51 104-163 21-71 (73)
293 3t8k_A Uncharacterized protein 38.1 1.6E+02 0.0055 26.6 9.6 30 374-403 41-70 (186)
294 4gq2_M Nucleoporin NUP120; bet 37.5 1.3E+02 0.0046 35.9 11.1 108 154-277 839-950 (950)
295 1ya0_A SMG-7 transcript varian 37.5 1.1E+02 0.0039 33.1 9.5 80 859-940 154-233 (497)
296 3kea_A K1L; tropism, ANK repea 37.4 1.1E+02 0.0039 30.0 9.2 17 482-498 167-183 (285)
297 3jxi_A Vanilloid receptor-rela 36.3 37 0.0013 33.0 5.2 25 238-262 12-36 (260)
298 3eu9_A Huntingtin-interacting 36.1 56 0.0019 31.0 6.5 114 238-367 16-136 (240)
299 1oyz_A Hypothetical protein YI 34.8 3.2E+02 0.011 26.4 24.1 134 805-955 128-262 (280)
300 3eiq_C Programmed cell death p 34.6 2.5E+02 0.0084 28.8 10.9 25 546-570 57-81 (358)
301 3kea_A K1L; tropism, ANK repea 32.2 1.6E+02 0.0056 28.8 9.4 40 239-282 39-78 (285)
302 1wdy_A 2-5A-dependent ribonucl 31.3 95 0.0033 30.2 7.5 12 528-539 199-210 (285)
303 3ltj_A Alpharep-4; protein eng 30.7 3E+02 0.01 24.8 18.8 186 773-978 14-199 (201)
304 2zu6_B Programmed cell death p 30.2 2E+02 0.0068 28.7 9.2 25 441-465 6-30 (307)
305 1ya0_A SMG-7 transcript varian 30.2 1.8E+02 0.0062 31.5 9.6 78 824-904 154-232 (497)
306 4aez_C MAD3, mitotic spindle c 30.0 1.2E+02 0.0041 28.5 6.9 51 839-889 131-182 (223)
307 4g8k_A 2-5A-dependent ribonucl 29.3 2.7E+02 0.0091 28.0 10.7 12 238-249 32-43 (337)
308 2d2s_A Exocyst complex compone 29.1 2.5E+02 0.0086 26.7 9.4 22 794-815 25-46 (235)
309 3jxi_A Vanilloid receptor-rela 28.1 33 0.0011 33.3 3.2 19 275-293 14-32 (260)
310 2r9g_A AAA ATPase, central reg 27.4 3.6E+02 0.012 24.7 10.0 35 520-555 26-60 (204)
311 2nsz_A Programmed cell death p 26.9 2.4E+02 0.0083 23.7 7.9 23 582-604 11-33 (129)
312 4aez_C MAD3, mitotic spindle c 25.7 1E+02 0.0035 28.9 5.7 52 804-855 131-183 (223)
313 4gq2_M Nucleoporin NUP120; bet 24.9 3.9E+02 0.013 31.9 12.1 46 76-128 823-868 (950)
314 2d2s_A Exocyst complex compone 24.3 4E+02 0.014 25.3 9.8 28 507-534 90-117 (235)
315 2w2u_A Hypothetical P60 katani 24.0 1.2E+02 0.004 23.3 4.8 17 868-884 30-46 (83)
316 2br9_A 14-3-3E, 14-3-3 protein 23.3 4.8E+02 0.016 24.7 13.5 16 904-919 185-200 (234)
317 3bge_A Predicted ATPase; struc 22.7 4.2E+02 0.015 24.2 8.8 32 520-551 19-50 (201)
318 3aji_A 26S proteasome non-ATPa 22.7 2.8E+02 0.0094 25.7 8.8 187 232-437 7-199 (231)
319 2zu6_B Programmed cell death p 22.4 1.8E+02 0.0063 29.0 7.3 23 478-500 171-193 (307)
320 2v6y_A AAA family ATPase, P60 22.2 1.3E+02 0.0045 23.0 4.8 17 868-884 22-38 (83)
321 2ion_A PDCD4, programmed cell 21.2 2.1E+02 0.0071 25.0 6.6 23 582-604 13-35 (152)
322 2b7e_A PRE-mRNA processing pro 21.1 78 0.0027 22.3 2.9 30 244-273 2-31 (59)
323 4b4t_O 26S proteasome regulato 20.5 3.9E+02 0.013 27.8 9.8 56 829-884 83-154 (393)
324 1om2_A Protein (mitochondrial 20.1 1.1E+02 0.0039 24.0 4.0 51 104-163 24-74 (95)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-39 Score=384.69 Aligned_cols=503 Identities=11% Similarity=0.018 Sum_probs=305.6
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 226 FDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLI 305 (989)
Q Consensus 226 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 305 (989)
+++..|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|++.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56667777777777777777777777777643 356666677777777777777777777766432 45666666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001966 306 YGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKME 385 (989)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 385 (989)
.+|++.|++++|.++|+++.... . ...++.+.++ ...|.+++..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFR----K-----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCcc----c-----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666421111 0 0000001110 01234456777788888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH--HH-HHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001966 386 KAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAF--EL-LDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILG 462 (989)
Q Consensus 386 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (989)
+|.++|++|.+.+ +.+..++..+...+...+..+.+. .+ +..+...+..+...+|+.++..|++.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 8888888877664 234445555544433322222111 11 3444444444445556666677777777777777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001966 463 EMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPN 542 (989)
Q Consensus 463 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (989)
++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|++++|..+++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 76654 466777777777777777777777777777665432 55667777777777777777777777776543 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLING 622 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 622 (989)
..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++..
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 6666667777777777777777777666543 3345566666667777777777777776666542 3355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 001966 623 LSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEK----GVEPN--TLTYNVLIDGFCKA 696 (989)
Q Consensus 623 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~ 696 (989)
|.+.|++++|.++|+++.+.... +..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 66666666666666666654332 5556666666666666666666666666544 44454 45566666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEF 761 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 761 (989)
|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++++..|.+..++..+..+
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 66666666666655543 44556666666666666666666666666666555555555554443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-39 Score=381.79 Aligned_cols=521 Identities=10% Similarity=0.026 Sum_probs=272.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHH
Q 001966 379 CKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQIN 458 (989)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 458 (989)
.+.|....+...+..+. .++...|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34444444444444332 245556666666666666666666666666542 345555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 459 AILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRG 538 (989)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 538 (989)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++. |+.. ...++.+.++ ...+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGG 195 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSS
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccc
Confidence 666655432 3455555566666666666666665555321 1100 0000000000 0112
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 539 LKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSV 618 (989)
Q Consensus 539 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 618 (989)
.+++..+|..++.+|.+.|++++|.+.|+++.+.+ +. +...+..
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~-----------------------------------~~~~~~~ 239 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AK-----------------------------------CYEAFDQ 239 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------------------------------CHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ch-----------------------------------hhHHHHH
Confidence 22233344444444444444444444444443322 11 2223333
Q ss_pred HHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 619 LINGLSKKLELREAL--GI-FLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK 695 (989)
Q Consensus 619 li~~~~~~g~~~~A~--~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 695 (989)
++..+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 332222221111111 01 233333333334444555555555666666666666655543 3456666666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLL 775 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 775 (989)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+..+.+..++..++.+|.+.|++++|.++|
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666666665543 3355556666666666666666666666666555555666666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 001966 776 DAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 776 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 855 (989)
+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++++ ..|
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 472 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQ 472 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 6665432 2245566666666666666666666666666532 33555666666666666666666666666666 444
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHH
Q 001966 856 D-NFTYYVMIDAHCKEGNVMEALKLKDLIFDK----RMPIS--AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFA 928 (989)
Q Consensus 856 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 928 (989)
+ ..+|..++.++.+.|++++|+++++++.+. +..|+ ..+|..++.+|.+.|++++|++.++++++.+|+ ++.
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 551 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DAN 551 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChH
Confidence 3 335666666666666666666666666654 33444 566666666666666666666666666666655 666
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhh
Q 001966 929 SCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGEN 973 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 973 (989)
+|..++.+|...|++++|.+.++++++. .|+ ...+..++..|.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHh
Confidence 6666666666666666666666666553 553 445555555543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.7e-28 Score=269.75 Aligned_cols=380 Identities=13% Similarity=0.076 Sum_probs=280.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 001966 585 VDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDV 664 (989)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 664 (989)
...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...+...++..+ .+..+|..+...+...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 344556666677766666666542 33455555666666677777777777766666532 3566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 665 DKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
++|+..|+++++.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ |.+...+..+...+...|++++|++.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777652 2245567777777778888888888887777653 445666777777777788888888888888
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATIT 824 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 824 (989)
++..|.+..++..++..+...|++++|...|+++++.. +.+...+..++..+...|++++|+..|++..+.. +.+..+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 88777777788888888888888888888888887653 2256677778888888888888888888877732 334667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALC 903 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (989)
+..++.++...|++++|...|+++++ +.|+.. ++..++.++.+.|++++|++.++++++..+. +..++..++.++.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHH
Confidence 88888888888888888888888888 667544 7777888888888888888888888877644 7788888888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCC
Q 001966 904 KREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGV 976 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 976 (989)
+.|++++|+..++++++..|+ +..++..++.+|.+.|++++|.+.++++++. .|+ ...+..++..+...|
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 888888888888888887766 7778888888888888888888888888753 675 667777777665544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.5e-28 Score=268.85 Aligned_cols=382 Identities=14% Similarity=0.068 Sum_probs=309.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 550 ILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLEL 629 (989)
Q Consensus 550 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 629 (989)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+. .+.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 344556677777777776666543 334455566666677777777777777776664 344667777777777888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 630 REALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEM 709 (989)
Q Consensus 630 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 709 (989)
++|+..|+++++..+. +...|..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888777765332 45667788888888888888888888887763 224556777788888889999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 710 TKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789 (989)
Q Consensus 710 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 789 (989)
.+.. |.+..+|..+...+...|++++|+..|+++++.+|.+..++..++..+...|++++|...+++.+... +.+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 8763 56788899999999999999999999999999988888889999999999999999999999988753 225788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHC 868 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 868 (989)
+..++..|...|++++|++.|+++.+.+ +.+..+|..++..+.+.|++++|...|+++++ ..|+. .++..++.++.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHH
Confidence 8899999999999999999999999843 33467899999999999999999999999998 66754 48888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 869 KEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
..|++++|++.++++++..+. +..++..++.++.+.|++++|+..++++++..|+ ++.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 999999999999999987654 7889999999999999999999999999999887 89999999998887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3e-29 Score=280.26 Aligned_cols=203 Identities=20% Similarity=0.238 Sum_probs=119.3
Q ss_pred HHHHHHHhhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhHH
Q 001966 248 KRVFSEMGEKGCRPN-VATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKR---------LGDV 317 (989)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~a 317 (989)
..+..++.+++..+. ...++.+|++||+.|++++|+++|++|.+.|+.||.+||+++|.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 334444444444332 234555666666666666666666666666666666666666666655443 4556
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001966 318 RLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRM 397 (989)
Q Consensus 318 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 397 (989)
.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHh
Q 001966 398 GIEPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCH 450 (989)
Q Consensus 398 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 450 (989)
|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.|+..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.9e-29 Score=278.52 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC---------hhHHHHHHHHHHHCCCCCCH
Q 001966 228 VYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGF---------VDEAVELKNSMVEKGLVPDS 298 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~ 298 (989)
...++.+|++||+.|++++|+++|++|.+.|+.||.++||++|.+|++.|. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987665 67899999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001966 299 YTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGF 378 (989)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 378 (989)
+||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 001966 379 CKSGKMEKAREVLNEIIRMGIEPNSRTYTSLIQGYCRM 416 (989)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 416 (989)
++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999864
No 7
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.96 E-value=6.2e-21 Score=222.99 Aligned_cols=823 Identities=12% Similarity=0.096 Sum_probs=487.2
Q ss_pred CChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccc--ccc
Q 001966 77 HNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEF--VCK 154 (989)
Q Consensus 77 ~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ 154 (989)
..|.-.|.||.-+..... . |..--.-+++.....|+ ..++.+.+.......++=+..++..+...-.. -..
T Consensus 409 gq~~pll~YF~~ll~~g~--L-n~~eSlEl~r~vl~q~r----~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~ 481 (1630)
T 1xi4_A 409 GQTSPLLQYFGILLDQGQ--L-NKYESLELCRPVLQQGR----KQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLR 481 (1630)
T ss_pred CCCCHHHHHHHHHHhcCC--C-cHHHHHHHHHHHHHhch----HHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHh
Confidence 345667777777665543 2 44444555555555555 35666666645555555444444332110000 001
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 155 GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
..+....+.++++.|++++++..-++. |+.|| |..|+..+.+.+ .+.|.++-..+.+ ..+ .....+.+
T Consensus 482 a~~~~Kvi~~l~~~gq~~ki~~Y~~~~---~~~pD---y~~ll~~~~~~~-P~~~~~fa~~L~~----~~~-p~~d~~~i 549 (1630)
T 1xi4_A 482 ANVPNKVIQCFAETGQVQKIVLYAKKV---GYTPD---WIFLLRNVMRIS-PDQGQQFAQMLVQ----DEE-PLADITQI 549 (1630)
T ss_pred cCCcHHHHHHHHHhCCHHHHHHHHhcc---CCCcc---HHHHHHHHhhcC-hHHHHHHHHHHhc----CCC-CccCHHHH
Confidence 124457888999999999999886654 67776 557777777654 7777776666665 322 45557889
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhh-----------------------------HHHHHHHHHccCChhHHHHH
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVAT-----------------------------YNVVIGGLCRVGFVDEAVEL 285 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------------------------~~~li~~~~~~g~~~~A~~~ 285 (989)
+..+...+..+++..++-+..+.+-+-+... +..+...+-+.|-++.|++.
T Consensus 550 vd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~ 629 (1630)
T 1xi4_A 550 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEH 629 (1630)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHh
Confidence 9999999999999999999887643212222 33333444455666666665
Q ss_pred HHHHHHCC--CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 001966 286 KNSMVEKG--LV-PDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVAS 362 (989)
Q Consensus 286 ~~~m~~~g--~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (989)
|..+.... +. .....=.-++.-+ ..=..+.+.+++++|...++.-|......+..-|...=-.+.-.++|++....
T Consensus 630 y~d~~dikR~~~~~~~~~~~~l~~~f-g~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~ 708 (1630)
T 1xi4_A 630 FTDLYDIKRAVVHTHLLNPEWLVNYF-GSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSF 708 (1630)
T ss_pred cCCHHHHHHHhhccCcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcch
Confidence 55443210 00 0000011122222 22344556666666665554444444444444444444444555555543321
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------------HHCCCCCChhh---------H----
Q 001966 363 -----------GNQIDLVIYNTLLKGFCKSGKMEKAREVLNEI------------IRMGIEPNSRT---------Y---- 406 (989)
Q Consensus 363 -----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~g~~~~~~~---------~---- 406 (989)
...-|..+....|.+.++.|++.|.+++.++- ++.. -||..- +
T Consensus 709 egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~k-l~d~~pli~vCdr~~~v~~l 787 (1630)
T 1xi4_A 709 EGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK-LTDQLPLIIVCDRFDFVHDL 787 (1630)
T ss_pred hhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCC-CCCCCCceeeccccccHHHH
Confidence 11224445555566666666666666654431 0111 011100 0
Q ss_pred ---------HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHH-------------HhcCCHHHHHHHHHHH
Q 001966 407 ---------TSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGL-------------CHCGDLRQINAILGEM 464 (989)
Q Consensus 407 ---------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~~ 464 (989)
...|..|...-++..+-.+...+.+.+.. ...-..|+... -+.+++.--...++.-
T Consensus 788 ~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~--e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~ 865 (1630)
T 1xi4_A 788 VLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCS--EDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEAR 865 (1630)
T ss_pred HHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCC--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111122211222222222222221111 11112222221 1222222222334444
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHHHH-H--------HHHHH-HHHCCCCCCHhHH------HHHHHHHHhcCCHHH-H
Q 001966 465 ITRGLKPNAIIYTNLVSTYFKKNKLQEA-G--------KLVER-MRREGITPDVSCF------NSLIIGLCKAKRMDE-A 527 (989)
Q Consensus 465 ~~~~~~~~~~~~~~li~~~~~~g~~~~A-~--------~~~~~-~~~~g~~~~~~~~------~~li~~~~~~g~~~~-A 527 (989)
+..| ..++.++|+|...|...++-.+. + .+..+ ..++++..-..+| .-||...-+.+-++. |
T Consensus 866 ~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~a 944 (1630)
T 1xi4_A 866 IHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLS 944 (1630)
T ss_pred HhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHH
Confidence 4444 45777888888888765432221 0 00001 1111100000000 112222222222111 1
Q ss_pred H-----------------------HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHh
Q 001966 528 R-----------------------IYLVEMLRRGL--KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGL--VPNDVI 580 (989)
Q Consensus 528 ~-----------------------~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 580 (989)
+ ++.++-+...+ ..++.-....+..|...|.+.+|++++++..-.+- ..+...
T Consensus 945 rylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 945 RYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred HHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 1 11111111100 11233344556677788888888888888773321 123455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001966 581 YTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCK 660 (989)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 660 (989)
.+.++.+..+. +..+..+...+.... + ..-+...+...|.+++|..+|++... .....+.++ -.
T Consensus 1025 qnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~ 1088 (1630)
T 1xi4_A 1025 QNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EH 1088 (1630)
T ss_pred HHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HH
Confidence 56666666666 445555555444321 1 33366778889999999999988521 222223332 26
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALEL 740 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 740 (989)
.+++++|.++.++. .+..+|..+..++...|++++|+..|.+. .|...|..++..+.+.|++++|++.
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 78899999988855 25788899999999999999999999664 3778888999999999999999999
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 741 FRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP 820 (989)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 820 (989)
|....+... +......++.+|++.+++++...+. . .++...|..++..|...|++++|..+|...
T Consensus 1157 L~mArk~~~-e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1157 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHHhhcc-cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 998887663 3333345889999999988644332 2 346677778999999999999999999985
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
..|..++.++.+.|++++|++.++++. +..+|..+..+|...|++..|......+ ..+++.+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHH
Confidence 379999999999999999999999873 4578999999999999999999877643 347778889999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCcc------cchhHHHHHhhh
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE--GVMDYAAKVLECMASFGWVS------NSISLADIVKGE 972 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~ 972 (989)
.|.+.|.+++|+.++++++..++. +...|..|+..|.+. ++..++.+.|..-. .+.| +...|..+.-.|
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988855 777887777766654 67778888887553 3344 356788888999
Q ss_pred hcCCChhhHH
Q 001966 973 NSGVDLDESK 982 (989)
Q Consensus 973 ~~~g~~~~a~ 982 (989)
.+.|++++|.
T Consensus 1366 ~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1366 DKYEEYDNAI 1375 (1630)
T ss_pred HhcccHHHHH
Confidence 9999999988
No 8
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.96 E-value=4e-21 Score=224.54 Aligned_cols=405 Identities=12% Similarity=0.048 Sum_probs=268.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 001966 512 NSLIIGLCKAKRMDEARIYLVEMLRRGL--KPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYC 589 (989)
Q Consensus 512 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (989)
...+.+|...|.+.+|++++++.+-.+. .-+...-+.++.+..+. +.....++.+.+... ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4566777788888888888888874321 12234444466555555 455555555554421 1333667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 001966 590 KEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQ 669 (989)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 669 (989)
..|.+++|..+|++... .....+.++. ..+++++|.++..+.. +..+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 78888888888877521 2222333332 5677888888777542 46677788888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 670 LYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
.|.+. .|...|..++..+.+.|++++|.+++....+.. ++....+.++.+|.+.+++++...+ +. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--~ 1192 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--G 1192 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh--C
Confidence 88553 366777778888888888888888888777653 3333334577778888777743322 21 2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLL 829 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 829 (989)
++...+..++..|...|++++|..+|.++ ..|..++.+|++.|++++|++.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 34456667888888888888888888774 36778888888888888888888765 3457788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCC
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK--REE 907 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~ 907 (989)
.+|...|++..|......++ .+...+..++..|.+.|.+++|+.+++..+..+. -+...|..++..|.+ -++
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-aH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-hHhHHHHHHHHHHHhCCHHH
Confidence 88888888888877665432 2344555777778888888888888888877653 366667666655554 457
Q ss_pred HHHHHHHHHHHHHCCC-----ccCHHhHHHHHHHHHhcCChhHHHHH-------------HHHHHhCCCcccchhHHHHH
Q 001966 908 YSEALRLLNEMGESGF-----RLGFASCRTVANDFLREGVMDYAAKV-------------LECMASFGWVSNSISLADIV 969 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~ 969 (989)
..++.++|.+-+...+ + +...|..+...|.+.|+++.|... |+..+.. ..|.+.++..+
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e-~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai 1408 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAE-QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHH
Confidence 7777777776555432 2 566778888888888888877622 2222111 33567777777
Q ss_pred hhhhcCC
Q 001966 970 KGENSGV 976 (989)
Q Consensus 970 ~~~~~~g 976 (989)
..|....
T Consensus 1409 ~Fyl~~~ 1415 (1630)
T 1xi4_A 1409 QFYLEFK 1415 (1630)
T ss_pred HHHHhhC
Confidence 7776555
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-24 Score=250.59 Aligned_cols=231 Identities=16% Similarity=0.073 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYC 798 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 798 (989)
.++..++..+...|++++|+..++++++..+. ..++..++..+...|++++|...++++.... +.+...+..++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 34444444455555555555555555544444 4444445555555555555555555554432 113344445555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 877 (989)
..|++++|+..|+++.+.. +.+..++..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|+
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555555554421 22334455555555555555555555555554 33322 24444555555555555555
Q ss_pred HHHHHHHhCCCCC-C----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHH
Q 001966 878 KLKDLIFDKRMPI-S----AEAYKAIIKALCK---REEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 878 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 949 (989)
+.++++++..+.. . ..++..++.++.. .|++++|+..++++++..|. ++.++..++.+|...|++++|...
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555432220 0 2245555555555 55555555555555555544 455555555555555555555555
Q ss_pred HHHHHh
Q 001966 950 LECMAS 955 (989)
Q Consensus 950 ~~~~~~ 955 (989)
++++.+
T Consensus 472 ~~~a~~ 477 (514)
T 2gw1_A 472 FEESAD 477 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.5e-25 Score=252.60 Aligned_cols=461 Identities=12% Similarity=0.009 Sum_probs=343.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
...+......+.+.|++++|+..|+++.... |+..+|..+..++.+.|++++|...++++++.++ .+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4566777788888999999999999988764 6888888888889999999999999998888653 366788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREA 632 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 632 (989)
+.+.|++++|...|+++...+ +++......++..+.+......+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 889999999999999888776 3455555555555555555555555554444433333333332221111122222222
Q ss_pred HHHHHHHHHCCCCC---------CHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCC--------CCHHHHH
Q 001966 633 LGIFLELLEKGLVP---------DVDTYNSLITSFCK---ICDVDKAFQLYEEMCE-----KGVE--------PNTLTYN 687 (989)
Q Consensus 633 ~~~~~~~~~~~~~p---------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~--------~~~~~~~ 687 (989)
..+...+......+ +...+......+.. .|++++|...|+++.+ .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 22222222111111 14444444444444 8999999999999988 3112 2355778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC
Q 001966 688 VLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK 767 (989)
Q Consensus 688 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 767 (989)
.+...+...|++++|...++++.+.+ |+..++..++..+...|++++|+..+++++...+.+..++..++..+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999874 3388899999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 001966 768 LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEE 847 (989)
Q Consensus 768 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 847 (989)
+++|...++++.+.... +...+..++..+...|++++|+..++++.+.. +.+..++..++..+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999986433 56788899999999999999999999998842 44577899999999999999999999999
Q ss_pred HHhCCCCCCHH-------HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 848 MLGKGIEPDNF-------TYYVMIDAHCK---EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 848 ~~~~g~~p~~~-------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
+++ ..|+.. .+..++.++.. .|++++|++.++++++..+. +..++..++.++.+.|++++|...+++
T Consensus 398 a~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 398 AIE--LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHH--HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH--hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 998 455432 78889999999 99999999999999988755 889999999999999999999999999
Q ss_pred HHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 918 MGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 918 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
+++..|+ ++.++..+ .+.++....+.+
T Consensus 475 a~~~~~~-~~~~~~~~--------~~~~~~~~~~~~ 501 (514)
T 2gw1_A 475 SADLART-MEEKLQAI--------TFAEAAKVQQRI 501 (514)
T ss_dssp HHHHCSS-HHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHhccc-cHHHHHHH--------HHHHHHHHHHHh
Confidence 9999987 66666554 334555555544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.9e-23 Score=234.69 Aligned_cols=370 Identities=13% Similarity=0.092 Sum_probs=252.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 001966 576 PNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLI 655 (989)
Q Consensus 576 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 655 (989)
.+...+..++..+.+.|++++|+..|+++.+. .+.+..+|..++..+...|++++|+..|.++++.++. +...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 34455556666666666666666666666553 2334555555666666666666666666665554322 345555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 656 TSFCKICDVDKAFQLYEEMCEKGVEPN-T---LTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKE 731 (989)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (989)
..+...|++++|...|+++.+.. |+ . ..+..++..+.. ..+..+...+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 55555555555555555555432 22 2 333333322110 0122234456777
Q ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 732 EKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 732 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
|++++|+..|+++++..+.+..++..++.+|...|++++|+..++++.+.. +.+..++..++..|...|++++|+..|+
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888777777788888888888888888888888887642 3366778888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHH------------HHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCH
Q 001966 812 EMQQRNLKPA-TITYRSL------------LNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----FTYYVMIDAHCKEGNV 873 (989)
Q Consensus 812 ~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~ 873 (989)
++.+. .|+ ...+..+ +..+...|++++|...|+++++ +.|+. ..+..++.++.+.|++
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 88763 343 3344444 7888999999999999999998 66763 3677788999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH------------HHHHhcC
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA------------NDFLREG 941 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~g 941 (989)
++|++.++++++..+. +..+|..++.+|...|++++|+..++++++..|+ ++.++..++ ..|...|
T Consensus 312 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 9999999999887654 7899999999999999999999999999999888 888888888 4455556
Q ss_pred -----ChhHHHHHHHH-HHhCCCcccc-----------hhHHHHHhhhhcCCChhhH
Q 001966 942 -----VMDYAAKVLEC-MASFGWVSNS-----------ISLADIVKGENSGVDLDES 981 (989)
Q Consensus 942 -----~~~~A~~~~~~-~~~~~~~p~~-----------~~~~~l~~~~~~~g~~~~a 981 (989)
+.+++.+.+++ +++ +.||. ..+..+..++...|+.+++
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 55677888886 444 35652 1345556666555555543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.8e-23 Score=232.87 Aligned_cols=389 Identities=12% Similarity=0.059 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 524 MDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRC 603 (989)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (989)
...+...+.+..... +.+...+..++..+.+.|++++|..+|+++++.. +.+..++..++..|...|++++|+..|++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455555555542 3467789999999999999999999999998764 55788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHH------------HHhcCCHHHHH
Q 001966 604 MLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDV---DTYNSLITS------------FCKICDVDKAF 668 (989)
Q Consensus 604 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~------------~~~~g~~~~A~ 668 (989)
+++.+ +.+..++..++..+.+.|++++|...|+++.+..+. +. ..+..++.. +...|++++|+
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99874 447889999999999999999999999999986433 33 556666444 44445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001966 669 QLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKG 748 (989)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 748 (989)
..|+++.+.. +.+..++..++.+|.+.|++++|...|+++.+.+ +.+..++..++..+...|++++|+..|++++...
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555554432 2244444445555555555555555555544431 3344444455555555555555555555554444
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HH
Q 001966 749 LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-----TI 823 (989)
Q Consensus 749 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~ 823 (989)
+.+...+..+.... ....+..++..+...|++++|+..|+++.+ ..|+ ..
T Consensus 242 p~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~ 296 (450)
T 2y4t_A 242 QDHKRCFAHYKQVK-----------------------KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVR 296 (450)
T ss_dssp TTCHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHH
T ss_pred CChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHH
Confidence 43333332220000 000112226666777777777777777766 3343 33
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA- 901 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 901 (989)
.+..++..+.+.|++++|+..++++++ +.|+ ...+..++.++...|++++|++.++++++..+. +..++..++.+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 373 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 566677777777777777777777776 5564 346777777777777777777777777776554 66666666632
Q ss_pred -----------HHccC-----CHHHHHHHHHH-HHHCCCcc--CH-------HhHHHHHHHHHhcCChhHH
Q 001966 902 -----------LCKRE-----EYSEALRLLNE-MGESGFRL--GF-------ASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 902 -----------~~~~g-----~~~~A~~~~~~-~~~~~~~~--~~-------~~~~~l~~~~~~~g~~~~A 946 (989)
|...| +.+++.+.+++ +++..|+. +. ..+..++.+|...|+.+.+
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 44444 66788888887 66666552 11 1445566666666655443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=8.6e-23 Score=236.75 Aligned_cols=431 Identities=10% Similarity=0.046 Sum_probs=206.5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001966 473 AIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILG 552 (989)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 552 (989)
...+..+...+.+.|++++|+..|+++....+ .+..+|..+..++.+.|++++|+..++++++.+. .+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34455666666666777777777766665432 2456666666666666666666666666666532 245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhc
Q 001966 553 YCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLAR------GILPEVQTYSVLINGLSKK 626 (989)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~li~~~~~~ 626 (989)
+...|++++|.+.|+ .... .|+. ....+..+...+...+|...++++... ...|+. ..+..+...
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHT
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHh
Confidence 666666666666664 2221 1111 111233344444455566666655432 111222 222233334
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHH
Q 001966 627 LELREALGIFLELLEKGLVPDVD-TYNSLITSFCKI--------CDVDKAFQLYEEMCEKGVEPN-------TLTYNVLI 690 (989)
Q Consensus 627 g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li 690 (989)
.+.+.+...+...... .+... ....+...+... |++++|..+++++.+.... + ..++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 4444443333222111 11111 112222111111 2455555555555543211 1 11233444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 691 DGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
..+...|++++|...++++.+. .|+..++..+...+...|++++|++.++++++..+.+..++..++..+...|++++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 4455555555555555555553 23345555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
|...++++++... .+...+..++..+...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++++
T Consensus 329 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555554321 133445555555555555555555555555431 22344555555555555555555555555554
Q ss_pred CCCCCCH-------HHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 851 KGIEPDN-------FTYYVMIDAHCKE----------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 851 ~g~~p~~-------~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
..|+. ..+..++.++... |++++|+..++++++..+. +..++..++.++.+.|++++|+.
T Consensus 407 --~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 407 --LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp --HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 22211 1122333444444 5555555555555554433 44555555555555555555555
Q ss_pred HHHHHHHCCCc
Q 001966 914 LLNEMGESGFR 924 (989)
Q Consensus 914 ~~~~~~~~~~~ 924 (989)
.++++++..|.
T Consensus 484 ~~~~al~~~~~ 494 (537)
T 3fp2_A 484 LFEDSAILART 494 (537)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhCCC
Confidence 55555555444
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3e-22 Score=232.14 Aligned_cols=428 Identities=16% Similarity=0.120 Sum_probs=227.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 001966 509 SCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGY 588 (989)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 588 (989)
..+..+...+.+.|++++|+..|+++++..+ .+..++..+..++.+.|++++|++.++++++.+ +.+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3455555566666666666666666665532 255566666666666666666666666666543 33455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcC
Q 001966 589 CKEGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEK------GLVPDVDTYNSLITSFCKIC 662 (989)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g 662 (989)
...|++++|+..|+ .... .|+. ....+..+...+...+|...++.++.. ...|+. ..+..+....
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence 66666666666664 2221 1111 111223333444445566666665442 111222 2223334444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHH
Q 001966 663 DVDKAFQLYEEMCEKGVEPNTL-TYNVLIDGFC--------KAGDLTEPFQLFDEMTKRGVPLDGS-------VYNALLS 726 (989)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~ 726 (989)
+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.. |.+.. ++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHH
Confidence 444444443332221 11111 1122222211 1235666666666666542 22222 3444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 727 GCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKA 806 (989)
Q Consensus 727 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 806 (989)
.+...|++++|+..++++++..+. ..++..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 555666666666666666665554 5556666666666666666666666666542 22455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 807 KQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 807 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
++.|+++.+.. +.+..++..++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|++.++++++
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666532 22345566666666666666666666666666 445433 555566666666666666666666654
Q ss_pred CCC-----CCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 886 KRM-----PISAEAYKAIIKALCKR----------EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 886 ~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
..+ ......+..++.++... |++++|+..++++++..|+ ++.++..++.+|...|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 311 11223344555555555 6666666666666666655 5666666666666666666666666
Q ss_pred HHHHhC
Q 001966 951 ECMASF 956 (989)
Q Consensus 951 ~~~~~~ 956 (989)
+++++.
T Consensus 486 ~~al~~ 491 (537)
T 3fp2_A 486 EDSAIL 491 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.9e-20 Score=202.86 Aligned_cols=205 Identities=16% Similarity=0.137 Sum_probs=102.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 001966 760 EFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRS 839 (989)
Q Consensus 760 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 839 (989)
..+...|++++|+..++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+..++..++..+...|+++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 33444444444444444444321 1133344444444444444444444444444321 223334444444444444444
Q ss_pred HHHHHHHHHHhCCCCCCHH-HH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF-TY------------YVMIDAHCKEGNVMEALKLKDLIFDKRMPISA----EAYKAIIKAL 902 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~-~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~ 902 (989)
+|...++++++ ..|+.. .+ ..++..+.+.|++++|++.++++++..+. +. ..+..++.++
T Consensus 206 ~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 206 LSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHH
Confidence 44444444444 333322 11 12245566666666666666666655433 33 2244456666
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhh
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGE 972 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 972 (989)
.+.|++++|+..++++++..|. ++.++..++.+|...|++++|.+.++++++. .|+ ...+..+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 6666666666666666666555 5666666666666666666666666666543 454 33444444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.9e-20 Score=204.35 Aligned_cols=321 Identities=15% Similarity=0.098 Sum_probs=276.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 612 EVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLID 691 (989)
Q Consensus 612 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 691 (989)
++..+..+...+...|++++|+..|.++++..+. +...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4567888999999999999999999999987544 67889999999999999999999999999863 336788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCChhhHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVP---LDGSVYNAL------------LSGCCKEEKLEQALELFRDMLEKGLASTLSFN 756 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 756 (989)
.+...|++++|...++++.+.. + .+...+..+ ...+...|++++|++.++++++..|.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999999863 3 355555555 57888999999999999999999998899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----------
Q 001966 757 TLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYR---------- 826 (989)
Q Consensus 757 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---------- 826 (989)
.++..+...|++++|...++++++.. +.+...+..++..+...|++++|+..|++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999763 3477899999999999999999999999998842 33344333
Q ss_pred --HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 827 --SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 827 --~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
.++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|++.++++++..+. +..+|..++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 336778999999999999999999 667643 3445779999999999999999999998655 899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
.++...|++++|...++++++..|+ ++.++..++.++...+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 8888888877665443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.3e-18 Score=195.91 Aligned_cols=378 Identities=16% Similarity=0.116 Sum_probs=199.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 001966 528 RIYLVEMLRRGLKPNIHSFRAFILGYCM----AGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK----EGNIAEAIS 599 (989)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 599 (989)
...+....+.| +..++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444444432 45555555555555 566666666666666543 44555556666666 566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHH
Q 001966 600 KFRCMLARGILPEVQTYSVLINGLSK----KLELREALGIFLELLEKGLVPDVDTYNSLITSFCK----ICDVDKAFQLY 671 (989)
Q Consensus 600 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 671 (989)
.|++..+.| +...+..|...|.. .+++++|+..|+...+.| +...+..+...|.. .++.++|.++|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 666666543 44455555555555 556666666666655543 34444455555544 45566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCK----AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK----EEKLEQALELFRD 743 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 743 (989)
++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|+.+|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 6555543 44555555555554 555566666665555543 34455555555553 4555555555555
Q ss_pred HHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 001966 744 MLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV-----QNMEKAKQLFLEMQ 814 (989)
Q Consensus 744 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 814 (989)
..+.+ +..++..++..|.. .+++++|+..|++..+.+ +...+..+...|... +++++|+..|++..
T Consensus 249 a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 249 SAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 55443 23344455555554 555555555555555432 334444455555444 55555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 001966 815 QRNLKPATITYRSLLNGYNRMG---NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 815 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 887 (989)
+.+ +...+..++..|...| +.++|+..|++..+. .+...+..++..+.. .+++++|++.++++.+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 432 2334444555554434 455555555555552 233445555555555 455555555555555543
Q ss_pred CCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCc-c-CHHhHHHHHHHH
Q 001966 888 MPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFR-L-GFASCRTVANDF 937 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~ 937 (989)
++.++..++.+|.. .+++++|...|+++.+.+++ | ++.+...++..+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 34555555555554 55555555555555555422 1 334444444443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.4e-20 Score=198.76 Aligned_cols=292 Identities=12% Similarity=0.053 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001966 680 EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLI 759 (989)
Q Consensus 680 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 759 (989)
..+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|+.+++++++..+.+..++..++
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3455566667777777888888888888887763 455566666777778888888888888888888887778888888
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 760 EFLCISN-KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNR 838 (989)
Q Consensus 760 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 838 (989)
..+...| ++++|...++++++.. +.+...|..++..+...|++++|++.|+++.+.. +.+...+..++..+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 8888888 8888888888888653 2245677888888888888888888888887742 33456777788888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHccCCHH
Q 001966 839 SEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM--------PISAEAYKAIIKALCKREEYS 909 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~ 909 (989)
++|...++++++ ..|+.. .+..++..+...|++++|+..++++++..+ +....++..++.++...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888 667544 777788888888888888888888876421 334678888888888889999
Q ss_pred HHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhh-hcCCChh
Q 001966 910 EALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGE-NSGVDLD 979 (989)
Q Consensus 910 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~~~ 979 (989)
+|+..++++++..|+ ++.++..++.+|...|++++|.+.++++++ +.|+ ...+..++..+ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 999999888888877 788888888888888999999888888854 4674 66777777777 4555543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.7e-17 Score=188.75 Aligned_cols=380 Identities=13% Similarity=0.078 Sum_probs=272.9
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 001966 563 GRFFNEMLNSGLVPNDVIYTSIVDGYCK----EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSK----KLELREALG 634 (989)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 634 (989)
.+.+....+. .+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4444444443 356666777777777 778888888888877763 56677777777777 778888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHH
Q 001966 635 IFLELLEKGLVPDVDTYNSLITSFCK----ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK----AGDLTEPFQLF 706 (989)
Q Consensus 635 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 706 (989)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.| +...+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888877764 45566667667766 678888888888877764 56667777777776 67788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHH
Q 001966 707 DEMTKRGVPLDGSVYNALLSGCCK----EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAM 778 (989)
Q Consensus 707 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 778 (989)
++..+.| +...+..+...|.. .++.++|+++|++..+.+ +..++..++..|.. .+++++|..+|++.
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8877764 66777777777776 778888888888887764 45567777777776 67888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHH
Q 001966 779 LEEQVNPNHDTYTTLINQYCK----VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM-----GNRSEVFVVFEEML 849 (989)
Q Consensus 779 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 849 (989)
.+.+ +...+..+...|.. .+++++|++.|++..+.| +...+..++..|... +++++|+..|+++.
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 7653 45566667777766 778888888888877643 455666777777766 78888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 001966 850 GKGIEPDNFTYYVMIDAHCKEG---NVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESG 922 (989)
Q Consensus 850 ~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 922 (989)
+.| +...+..++.++...| ++++|++.++++.+.+ ++.++..++..|.. .+++++|...++++.+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 743 3456667777776655 6788888888887753 67778888888877 778888888888887765
Q ss_pred CccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc-c-cchhHHHHHhhhhc
Q 001966 923 FRLGFASCRTVANDFLR----EGVMDYAAKVLECMASFGWV-S-NSISLADIVKGENS 974 (989)
Q Consensus 923 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~ 974 (989)
++.++..|+.+|.. .+++++|..+|+++.+.+.. | +......++..+..
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 56777888888887 78888888888888766432 3 34455556555443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-19 Score=194.55 Aligned_cols=294 Identities=13% Similarity=0.020 Sum_probs=237.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 645 VPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNAL 724 (989)
Q Consensus 645 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (989)
..+...+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3355566677777888888888888888887763 2244556667777888888888888888888763 5567788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 725 LSGCCKEE-KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNM 803 (989)
Q Consensus 725 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 803 (989)
...+...| ++++|+..|+++++..+.+..++..++..+...|++++|+..++++.+.... +...+..++..|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 88888888 8899999999998888877888888999999999999999999988875322 456677788888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----C----CCCHHHHHHHHHHHHhcCCHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG----I----EPDNFTYYVMIDAHCKEGNVME 875 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~----~p~~~~~~~l~~~~~~~g~~~~ 875 (989)
++|++.+++..+.. +.+..++..++..+...|++++|...++++++.. . ......+..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999988753 4457788889999999999999999999988721 0 1224578889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH-HhcCChh
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF-LREGVMD 944 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 944 (989)
|++.++++++..+. +..++..++.++.+.|++++|...++++++..|+ ++.++..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 99999999988765 7889999999999999999999999999999887 889999999988 5556543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=7.8e-18 Score=193.63 Aligned_cols=429 Identities=13% Similarity=0.073 Sum_probs=296.2
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 496 VERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLV 575 (989)
Q Consensus 496 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (989)
|++..+..+ -+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 344444422 26677888887 467888888888888888753 3366778888888888888888888888888663
Q ss_pred CCHHhHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 001966 576 PNDVIYTSIVDGY-CKEGNIAEAIS----KFRCMLAR-GIL-PEVQTYSVLINGLSK---------KLELREALGIFLEL 639 (989)
Q Consensus 576 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-p~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 639 (989)
|+...|..++... ...|+.++|.+ +|+..+.. |.. ++...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666666666433 34566666554 66665543 333 355667776665544 56777777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------HHCC
Q 001966 640 LEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEM------TKRG 713 (989)
Q Consensus 640 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~ 713 (989)
++....+....|..........|. .+...++. .+.+++..|..++... .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 762111111222221111000010 00011110 1234455666655542 2211
Q ss_pred ---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCChhhHHHHHHHHHH-------cCC
Q 001966 714 ---VPLD--------GSVYNALLSGCCKE----EKL----EQALELFRDMLEKGLASTLSFNTLIEFLCI-------SNK 767 (989)
Q Consensus 714 ---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~ 767 (989)
++|+ ...|...+...... ++. +.++.+|++++...|.+...|..++..+.+ .|+
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 2443 24555555443322 222 478889999999988888999999988876 688
Q ss_pred HH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCH
Q 001966 768 LQ-------EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-T-ITYRSLLNGYNRMGNR 838 (989)
Q Consensus 768 ~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~ 838 (989)
++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|..++..+.+.|++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCH
Confidence 76 9999999998632233678899999999999999999999999998 4565 3 5899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 839 SEVFVVFEEMLGKGIEPDN-FTYYVMIDA-HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
++|..+|+++++ ..|.. ..+...+.. +...|++++|.++|+++++..+. +...|..++..+.+.|+.++|..+|+
T Consensus 373 ~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 373 KSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999998 55543 233333333 33589999999999999987655 88999999999999999999999999
Q ss_pred HHHHCCCc-c--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 917 EMGESGFR-L--GFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 917 ~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++++..+. | ....|..++......|+.+.+..+++++.+.
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998654 1 2347888888889999999999999998764
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=9.3e-20 Score=199.66 Aligned_cols=260 Identities=14% Similarity=0.044 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH
Q 001966 685 TYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI 764 (989)
Q Consensus 685 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 764 (989)
.+..+...+.+.|++++|...|+++.+.. |.+..++..++..+...|++++|++.|+++++..+.+..++..++..+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34455555555556666666665555542 44555555555555566666666666666655555555555556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 001966 765 SNKLQEAHQLLDAMLEEQVNPNHDTY----------------TTLINQYCKVQNMEKAKQLFLEMQQRNLKP---ATITY 825 (989)
Q Consensus 765 ~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 825 (989)
.|++++|...+++++..... +...+ ..+...+ ..|++++|+..|+++.+. .| +..++
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 220 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--DPTSIDPDVQ 220 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence 66666666666655543211 11111 1222233 667777777777777763 33 35677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++..+...|++++|+..++++++ +.|+. ..+..++.++...|++++|++.++++++..+. +..++..++.++.+
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 7777777777777777777777777 55643 36667777777777777777777777776544 66777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCccC-----------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLG-----------FASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.|++++|...++++++..|+ + ..+|..++.+|...|++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 77777777777777766554 3 567777777777777777777766543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.9e-19 Score=197.21 Aligned_cols=284 Identities=12% Similarity=-0.028 Sum_probs=236.8
Q ss_pred HhcCChhHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHH
Q 001966 694 CKAGDLTEPFQ-LFDEMTKRGV---PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQ 769 (989)
Q Consensus 694 ~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 769 (989)
...|++++|.. .+++...... ..+...+..+...+...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34578888888 8876654321 1134567788999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH----------------HHHHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYR----------------SLLNGY 832 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~----------------~l~~~~ 832 (989)
+|+..++++++.. +.+..++..++..|...|++++|++.++++.+. .|+ ...+. .+...+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999999764 337889999999999999999999999999984 343 22222 234444
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPD---NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS 909 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 909 (989)
..|++++|...++++++ ..|+ ..++..++.++...|++++|++.++++++..+. +..+|..++.++...|+++
T Consensus 193 -~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp -HHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred -hcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999 6676 558888999999999999999999999988655 7899999999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc------------chhHHHHHhhhhcCCC
Q 001966 910 EALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN------------SISLADIVKGENSGVD 977 (989)
Q Consensus 910 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~ 977 (989)
+|+..++++++..|. ++.++..++.+|...|++++|...++++++. .|+ ...|..++..+...|+
T Consensus 269 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 269 EAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999999887 8999999999999999999999999999764 453 4789999999999999
Q ss_pred hhhHHHHHhh
Q 001966 978 LDESKDLMKQ 987 (989)
Q Consensus 978 ~~~a~~~~~~ 987 (989)
+++|.+++++
T Consensus 346 ~~~A~~~~~~ 355 (368)
T 1fch_A 346 SDAYGAADAR 355 (368)
T ss_dssp GGGHHHHHTT
T ss_pred hHhHHHhHHH
Confidence 9999988764
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2.9e-17 Score=188.91 Aligned_cols=426 Identities=9% Similarity=0.061 Sum_probs=293.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001966 531 LVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLARGIL 610 (989)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 610 (989)
+++.++..+ -+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 445555432 26777888887 477888888888888888753 556677888888888888888888888888875 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 001966 611 PEVQTYSVLINGL-SKKLELREALG----IFLELLEK-GLVP-DVDTYNSLITSFCK---------ICDVDKAFQLYEEM 674 (989)
Q Consensus 611 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 674 (989)
|+...|...+... ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777776533 34566666554 66655543 4333 45566666655443 56777778888777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC
Q 001966 675 CEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM------LEKG 748 (989)
Q Consensus 675 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~ 748 (989)
++....+....|..........|. .+...++. ...+++..|..+++.. ++..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111111222222111100110 00111110 1234566677666652 2221
Q ss_pred ----CCC--------hhhHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cC
Q 001966 749 ----LAS--------TLSFNTLIEFLCIS----NKL----QEAHQLLDAMLEEQVNPNHDTYTTLINQYCK-------VQ 801 (989)
Q Consensus 749 ----~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 801 (989)
+|. ...|...+...... ++. +++..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 222 13444444332221 222 47888999998752 3367889888888875 79
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC
Q 001966 802 NME-------KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN--FTYYVMIDAHCKEGN 872 (989)
Q Consensus 802 ~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~ 872 (989)
+++ +|+.+|++..+.-.+.+...|..++..+...|++++|..+|+++++ +.|+. ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcC
Confidence 987 9999999998632344578999999999999999999999999999 78864 378888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+++|.++|+++++..+. +...|...+.. +...|+.++|..+|+++++..|+ ++.+|..++..+.+.|+.++|+.+|+
T Consensus 372 ~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 99999999999987543 55555554444 34689999999999999999887 89999999999999999999999999
Q ss_pred HHHhCC-Cccc--chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 952 CMASFG-WVSN--SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 952 ~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+++... ..|+ ...|...+......|+.+.+.++.+++
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998753 2332 336777788888889999999887764
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.2e-19 Score=198.31 Aligned_cols=262 Identities=12% Similarity=-0.035 Sum_probs=203.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
+...+..++..+.+.|++++|+..|+++++..|.+..++..++..+...|++++|+..|+++++.. +.+..++..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344577777778888888888888888888877777888888888888888888888888887653 2356778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---HHHHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPAT-----------ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD---NFTYYV 862 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ 862 (989)
|...|++++|++.|+++.+. .|+. ..+..++..+...|++++|...++++++ ..|+ ..++..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHH
Confidence 88888888888888888763 3332 2233457788888999999999999988 5665 557888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++.++...|++++|++.++++++..+. +..+|..++.++...|++++|+..++++++..|+ ++.++..++.+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 888899999999999999999887655 7888999999999999999999999999988877 78889999999999999
Q ss_pred hhHHHHHHHHHHhCCCccc-------------chhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 943 MDYAAKVLECMASFGWVSN-------------SISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 943 ~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+++|...++++++. .|+ ...|..++..+...|+.+.+.+..++
T Consensus 297 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988764 333 56788888888888988888877654
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.8e-17 Score=184.06 Aligned_cols=380 Identities=10% Similarity=-0.065 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-
Q 001966 543 IHSFRAFILGYCMAGEMQTAGRFFNEMLNS--------GLVPNDVIYTSIVDGYCKEGNIAEAISKFRCMLAR-----G- 608 (989)
Q Consensus 543 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 608 (989)
...|+.+...+...|++++|++.|++.++. .-+....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777777777777777766531 11223356666777777777777777777665432 0
Q ss_pred -CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCC
Q 001966 609 -ILPEVQTYSVLINGLSK--KLELREALGIFLELLEKGLVPDVDTYNSLITS---FCKICDVDKAFQLYEEMCEKGVEPN 682 (989)
Q Consensus 609 -~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 682 (989)
......++..+..++.. .+++++|+..|++.++..+. +...+..+... +...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01123344444444433 33566666666666665332 33333333333 233455566666666665542 123
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHH
Q 001966 683 TLTYNVLIDGFCK----AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTL 758 (989)
Q Consensus 683 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 758 (989)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|+..++++++..|.+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4444444433332 345566666666665542 44556666666666666666666666666666666666666655
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNR 838 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 838 (989)
+..|...+....+.. ...........+.+++|+..+++..+.. +.+..++..++..+...|++
T Consensus 288 g~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 555433211110000 0000001112234678888888888742 33456788899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 839 SEVFVVFEEMLGKGIEPDNF----TYYVMID-AHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
++|+..|+++++ +.|+.. .+..++. .....|++++|+..|+++++..+. +.... +....+.+
T Consensus 351 ~~A~~~~~kaL~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~-~~~~~----------~~~~~l~~ 417 (472)
T 4g1t_A 351 EEAEYYFQKEFS--KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK-SREKE----------KMKDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC-CHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHH----------HHHHHHHH
Confidence 999999999998 555543 2333333 345789999999999999987654 33221 22455677
Q ss_pred HHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 914 LLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++++.++.+|. ++.+|..||.+|...|++++|++.|+++++.
T Consensus 418 ~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 418 IAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888888888 8999999999999999999999999999875
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.4e-17 Score=185.05 Aligned_cols=395 Identities=12% Similarity=-0.015 Sum_probs=260.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 001966 507 DVSCFNSLIIGLCKAKRMDEARIYLVEMLRR--------GLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNS-----G 573 (989)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 573 (989)
....||.+...+...|++++|++.|++.++. .-.....+|..+...|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999988652 11224678999999999999999999999987642 1
Q ss_pred --CCCCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCC
Q 001966 574 --LVPNDVIYTSIVDGYCKE--GNIAEAISKFRCMLARGILPEVQTYSVLING---LSKKLELREALGIFLELLEKGLVP 646 (989)
Q Consensus 574 --~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~p 646 (989)
......++..+..++.+. +++++|+..|++.++.. +.+...+..+... +...++.++|++.+++.++..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 112345666666666654 57999999999998863 2355566555554 44567889999999998887543
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 001966 647 DVDTYNSLITSFCK----ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYN 722 (989)
Q Consensus 647 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 722 (989)
+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...++++.+.. |.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55666666555544 467889999999988764 3477788999999999999999999999999873 66788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQN 802 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 802 (989)
.+...|...+.... .... ..........+.+++|...+++..+... .+...+..++..|...|+
T Consensus 286 ~lg~~y~~~~~~~~---------~~~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLRE------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh---------hHHH------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhcc
Confidence 88777653221111 1000 0111111223346778888888876432 244567778888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001966 803 MEKAKQLFLEMQQRNLKPAT--ITYRSLLN-GYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKL 879 (989)
Q Consensus 803 ~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 879 (989)
+++|++.|++..+....|.. ..+..++. .....|+.++|+..|+++++ +.|+...... ..+.+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHH
Confidence 99999999988874322221 12333333 24567899999999999999 8887653322 23445667
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
+++.++.++. ++.+|..++.+|...|++++|++.|+++++.++. .|.+...+|
T Consensus 419 ~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~-~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSL-IPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcHhhcCC
Confidence 7777777655 7889999999999999999999999999998876 666655544
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.9e-18 Score=187.43 Aligned_cols=265 Identities=12% Similarity=0.020 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFL 762 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 762 (989)
...+..+...+.+.|++++|...|+++.+.. |.+..++..++..+...|++++|+..|+++++..|.+..++..++..|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3345666666677777777777777776653 556677777777777777777777777777777776677777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVN---------PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKP--ATITYRSLLNG 831 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 831 (989)
...|++++|+..++++++.... .....+..++..+...|++++|++.|+++.+.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 7777777777777777653110 012234456778889999999999999998843 22 57789999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+...|++++|+..++++++ +.|+. .++..++.++...|++++|++.++++++..+. +..+|..++.+|.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998 67754 48888999999999999999999999988755 78999999999999999999
Q ss_pred HHHHHHHHHHCCCcc-----------CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 911 ALRLLNEMGESGFRL-----------GFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 911 A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
|+..++++++..|+. +..+|..++.++...|+.+.|.+..++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998876441 257789999999999999998887764
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=7e-18 Score=181.16 Aligned_cols=271 Identities=13% Similarity=-0.032 Sum_probs=155.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC
Q 001966 687 NVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN 766 (989)
Q Consensus 687 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 766 (989)
..+...+...|++++|..+|+++.+.. +.+..++..++..+...|++++|+..++++++..+.+..++..++..+...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 344444555555555555555554432 3344455555555555555555555555555554444445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHhHHHHH
Q 001966 767 KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSL-LN-GYNRMGNRSEVFVV 844 (989)
Q Consensus 767 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~-~~~~~g~~~~A~~~ 844 (989)
++++|...++++.+.... +...+..+.. ..|+......+ .. .+...|++++|...
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhH----------------------HHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 555555555555443111 1111111100 00000011111 22 25566777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 845 FEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 845 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|
T Consensus 161 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALE--MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777776 4554 336666777777777777777777777766544 667777777777777777777777777777766
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-------------chhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 924 RLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-------------SISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 924 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
. ++.++..++.+|...|++++|.+.++++.+. .|+ ...+..++..+...|++++|...+++
T Consensus 238 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 238 G-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred C-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5 6777777777777777777777777777653 343 45667777777777777777776654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=5.7e-18 Score=181.90 Aligned_cols=280 Identities=12% Similarity=0.011 Sum_probs=226.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 647 DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLS 726 (989)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 726 (989)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456778888999999999999999999864 3477888999999999999999999999999874 668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHH
Q 001966 727 GCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN--QYCKVQNME 804 (989)
Q Consensus 727 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~ 804 (989)
.+...|++++|++.++++++..+.+...+..+...+ |+......+.. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 999999999999999999998886555544432111 11112223322 366788899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 805 KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLI 883 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 883 (989)
+|++.++++.+.. +.+..++..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|++.++++
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988743 44677889999999999999999999999998 66754 47888899999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----------CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 001966 884 FDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----------GFASCRTVANDFLREGVMDYAAKVLEC 952 (989)
Q Consensus 884 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 952 (989)
++..+. +..++..++.++...|++++|...++++++..|.. ++.++..++.++...|++++|...+++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 987655 78899999999999999999999999999887653 477899999999999999999999876
Q ss_pred HH
Q 001966 953 MA 954 (989)
Q Consensus 953 ~~ 954 (989)
++
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 53
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.7e-17 Score=173.13 Aligned_cols=258 Identities=10% Similarity=0.016 Sum_probs=179.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDG--SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQE 770 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 770 (989)
....|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ..+++..++..++..+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34567777777776655432 2222 2344556777777777777765544 244556667777777777777788
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 771 AHQLLDAMLEEQVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 771 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
|++.+++++..+..| +...+..++..+...|++++|++.+++ +.+..++..++..+.+.|++++|...+++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888887777655434 455666677777788888888877776 4556677777888888888888888888887
Q ss_pred hCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 001966 850 GKGIEPDNFTYY---VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 850 ~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 926 (989)
+ ..|+..... .++..+...|++++|+.+|+++++..+. +..+|..++.++.+.|++++|+..++++++..|+ +
T Consensus 158 ~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~ 233 (291)
T 3mkr_A 158 D--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H 233 (291)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred h--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 7 566654211 1223344557788888888888877544 7788888888888888888888888888888877 7
Q ss_pred HHhHHHHHHHHHhcCChhH-HHHHHHHHHhCCCcccchhHHH
Q 001966 927 FASCRTVANDFLREGVMDY-AAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
+.++..++.++...|+..+ +.++++++++. .|+......
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~d 273 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 8888888888888888865 56777777653 676554433
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.4e-17 Score=174.11 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 155 GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
+.+|+.|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++.+++ ..+++.+.+.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-----~~~~~~i~~~L 100 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-----KARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCccchhHHHH
Confidence 347777777777777777777777543 4555677777777777777777776555554 23446667777
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001966 235 IDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRL 314 (989)
Q Consensus 235 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 314 (989)
+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|..++.++++.|++
T Consensus 101 i~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp --------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 777777777777776663 256667777777777777777777777765 2567777777777777
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001966 315 GDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEI 394 (989)
Q Consensus 315 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 394 (989)
++|.+.++++ .++.+|..++.+|+..|+++.|......+. . +......++..|.+.|++++|..+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777766 256677777777777777777754444321 1 2222335666677777777777777766
Q ss_pred HHCCCCCChhhHHHHHHHHHh
Q 001966 395 IRMGIEPNSRTYTSLIQGYCR 415 (989)
Q Consensus 395 ~~~g~~~~~~~~~~li~~~~~ 415 (989)
+... +.....|+-|.-.|++
T Consensus 234 L~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHT
T ss_pred hCCc-HHHHHHHHHHHHHHHh
Confidence 6443 3344455555555554
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=4.1e-17 Score=170.18 Aligned_cols=256 Identities=9% Similarity=0.052 Sum_probs=196.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001966 657 SFCKICDVDKAFQLYEEMCEKGVEPN--TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKL 734 (989)
Q Consensus 657 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 734 (989)
-....|+++.|+...+..... .|+ ......+..+|...|++++|+..++. . -+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 345678888888877665443 233 23445567788888888888876644 2 356677788888888888888
Q ss_pred HHHHHHHHHHHHcC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 735 EQALELFRDMLEKG--LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 735 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
++|++.+++++..+ |.+...+..++..+...|++++|++.+++ +.+...+..++..|.+.|++++|++.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998888764 55677778888888999999999988876 35777888888899999999999999999
Q ss_pred HHHCCCCCCHH-HH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001966 813 MQQRNLKPATI-TY--RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM 888 (989)
Q Consensus 813 ~~~~~~~p~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 888 (989)
+.+. .|+.. .. ..++..+...|++++|..+|+++++ ..|+.. .+..++.++.+.|++++|++.++++++..+
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8874 45532 11 1223334456889999999999998 566544 788888999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCCCccCHHhH
Q 001966 889 PISAEAYKAIIKALCKREEYSE-ALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~ 930 (989)
. ++.++..++..+...|+.++ +.++++++++..|+ ++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~ 272 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIK 272 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 6 88899999999999998865 57888999998887 66654
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=5.4e-17 Score=171.41 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=54.1
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001966 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRL 319 (989)
Q Consensus 240 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 319 (989)
+.|++++|.++++++ ++..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 556677777777666 23346667777777777777777766542 355566666666666666666666
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001966 320 VLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLNEIIRMGI 399 (989)
Q Consensus 320 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 399 (989)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55544442 3345555666666666666666555553 244455555666566666666666655544
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 001966 400 EPNSRTYTSLIQGYCRMRKMVSAFELLDEMKKKNLVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNL 479 (989)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 479 (989)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|+..|+++.|......+. .++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 23555555555555555555555555 144555555555555555555543333211 111112234
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 001966 480 VSTYFKKNKLQEAGKLVERMR 500 (989)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~ 500 (989)
+..|.+.|.+++|..+++...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 444444444444444444444
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=8.9e-19 Score=198.95 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=126.4
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 001966 224 FEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGE---KGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYT 300 (989)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 300 (989)
...-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||++|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 444567999999999999999999999988764 58899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHH
Q 001966 301 YVNLIYGFSAAKRL-GDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQID------LVIYNT 373 (989)
Q Consensus 301 ~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~ 373 (989)
|+++|.++|+.|+. ++|.++|++|.+.|+.||.++|+.++.+..+.+-++.. +++ .-++.|+ +.+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccccchHH
Confidence 99999999999985 78899999999999999999999998776655433333 222 2234443 455566
Q ss_pred HHHHHHhcC
Q 001966 374 LLKGFCKSG 382 (989)
Q Consensus 374 li~~~~~~g 382 (989)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 677777655
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.9e-16 Score=161.86 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV--NPN----HDTYT 791 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 791 (989)
...+..+...+...|++++|+..|+++++.. .+..++..++..+...|++++|+..++++++... .++ ...+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3456667777777888888888888887777 7777778888888888888888888887775321 112 46778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
.++..+...|++++|++.|++..+ ..|+. ..+...|++++|...+++++. ..|+.. .+..++..+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 888888888999999999888887 44553 345566788999999999988 677655 777888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 950 (989)
|++++|++.++++++..+. +..+|..++.++...|++++|+..++++++..|+ ++.++..++.+|...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999987755 7889999999999999999999999999998877 8889999999999999999999999
Q ss_pred HHHHhC
Q 001966 951 ECMASF 956 (989)
Q Consensus 951 ~~~~~~ 956 (989)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.3e-18 Score=191.55 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=97.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHH
Q 001966 261 PNVATYNVVIGGLCRVGFVDEAVELKNSMVE---KGLVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYY 337 (989)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 337 (989)
.-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457888888888888888888888877764 4778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 338 ALIDGFVKQGDV-EEAFRVKDELVASGNQIDLVIYNTLLKGFCKS 381 (989)
Q Consensus 338 ~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 381 (989)
++|+++|+.|+. ++|.++|++|.+.|+.||.++|+.++.+..+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 888888888774 67778888888888888888888877665554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.2e-16 Score=159.02 Aligned_cols=193 Identities=15% Similarity=0.050 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
...+..++..+...|++++|+..|++.++.. +.+...+..++..+.+.|++++|+..|++..+.. +.+...+..++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3344444445555555555555555544432 1134444444444555555555555555544421 2223344444444
Q ss_pred HHhc-----------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 832 YNRM-----------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 832 ~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
+... |++++|+..++++++ +.|+.. .+..++.++...|++++|++.++++++.+ .++.++..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 4444 444444444444444 444322 34444444444444444444444444443 2444444444
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
.++...|++++|+..++++++..|+ ++.++..++.++...|++++|.+.++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444444444444444444444 44444444444444444444444444
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=3.2e-16 Score=168.77 Aligned_cols=247 Identities=13% Similarity=0.082 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK-LQEAHQLLDAMLEEQVNPNHDTYTTLINQ 796 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 796 (989)
..+|..+...+...|++++|++.++++++.+|.+..+|..++.++...|+ +++|+..++++++... .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45677777888888889999999999998888888888888989999996 9999999999887532 267788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh-cCCHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK-EGNVM 874 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~-~g~~~ 874 (989)
+...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..++++++ +.|++. .|..++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 989999999999999998843 44577889999999999999999999999998 788655 88888888888 56657
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC------
Q 001966 875 EA-----LKLKDLIFDKRMPISAEAYKAIIKALCKRE--EYSEALRLLNEMGESGFRLGFASCRTVANDFLREG------ 941 (989)
Q Consensus 875 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 941 (989)
+| ++.++++++..+. +..+|..++.++...| ++++|++.++++ +..++ ++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccc
Confidence 77 5889999988766 8889999999999888 689999999887 66666 7888999999998874
Q ss_pred --C-hhHHHHHHHHH-HhCCCccc-chhHHHHHhhhh
Q 001966 942 --V-MDYAAKVLECM-ASFGWVSN-SISLADIVKGEN 973 (989)
Q Consensus 942 --~-~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~~~ 973 (989)
+ +++|+++++++ .+ +.|+ ...|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 2 58899999988 55 4785 566766666654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=2.8e-16 Score=156.41 Aligned_cols=197 Identities=13% Similarity=-0.023 Sum_probs=155.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHH
Q 001966 784 NPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYV 862 (989)
Q Consensus 784 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ 862 (989)
+++...+..++..+.+.|++++|+..|++..+.. +.+...+..++.++...|++++|+..++++++ +.|+.. .+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 3466678888888999999999999999988742 44577888899999999999999999999998 778655 7888
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 863 MIDAHCKE-----------GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 863 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
++.++... |++++|+..++++++.+|. +..+|..++.++...|++++|+..++++++.. + ++.++.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-D-TPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-CHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-chHHHH
Confidence 88888888 9999999999999988766 78889999999999999999999999998888 5 888899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.++.+|...|++++|...++++++. .|+ ...+..++..+...|++++|...+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999998764 674 677888899999999999998888763
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.7e-16 Score=158.67 Aligned_cols=237 Identities=17% Similarity=0.113 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------hhhH
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS-------TLSF 755 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 755 (989)
...+..+...+...|++++|...|+++.+.. .+..++..+...+...|++++|++.++++++..+.. ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456667777788888888888888887765 667778888888888888888888888888765522 5678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 756 NTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM 835 (989)
Q Consensus 756 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 835 (989)
..++..+...|++++|...++++.+. .|+. ..+...|++++|+..++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888999999999999999998874 3443 34666788999999999998842 33456888999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRL 914 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 914 (989)
|++++|...++++++ ..|+. ..+..++.++...|++++|++.++++++..+. +..+|..++.++.+.|++++|...
T Consensus 153 ~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998 66754 47888999999999999999999999988755 789999999999999999999999
Q ss_pred HHHHHHCC------CccCHHhHHHHHH
Q 001966 915 LNEMGESG------FRLGFASCRTVAN 935 (989)
Q Consensus 915 ~~~~~~~~------~~~~~~~~~~l~~ 935 (989)
++++++.. |. +..++..+..
T Consensus 230 ~~~a~~~~~~~~~~p~-~~~~~~~l~~ 255 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSS-AREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHTTTT-HHHHHHHHHH
T ss_pred HHHHHHhChhhcCCCc-hHHHHHHHHH
Confidence 99999887 44 4555555544
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=1.1e-15 Score=159.04 Aligned_cols=249 Identities=11% Similarity=0.018 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNP--NHDTYTTLINQ 796 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 796 (989)
..+......+...|++++|+..|+++++..|.+..++..++..+...|++++|+..++++++....+ ....|..++..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455677788899999999999999999988888889999999999999999999999998743222 23458889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVME 875 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 875 (989)
+...|++++|++.|++..+.. +.+..++..++..+...|++++|+..++++++ ..|+.. .+..++..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998842 44567899999999999999999999999988 677655 77777745555679999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCC---CccC----HHhHHHHHHHHHhcCChhH
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREE---YSEALRLLNEMGESG---FRLG----FASCRTVANDFLREGVMDY 945 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~ 945 (989)
|++.++++++..+. +...+..++.++...|+ +++|+..++++++.. +.++ ..++..++.+|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999988765 78889999999999998 888999999988764 3321 2578889999999999999
Q ss_pred HHHHHHHHHhCCCccc-chhHHHHHhhhh
Q 001966 946 AAKVLECMASFGWVSN-SISLADIVKGEN 973 (989)
Q Consensus 946 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 973 (989)
|.+.++++++. .|+ ...+-.+.....
T Consensus 240 A~~~~~~al~~--~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 240 ADAAWKNILAL--DPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHC----
T ss_pred HHHHHHHHHhc--CccHHHHHHHhhhhhc
Confidence 99999999874 686 444554444443
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=1.6e-15 Score=169.30 Aligned_cols=346 Identities=13% Similarity=0.083 Sum_probs=168.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 549 FILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGNI---AEAISKFRCMLARGILPEVQTYSVLINGLSK 625 (989)
Q Consensus 549 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 625 (989)
+...+.+.|++++|.+.|.+..+.| +...+..+...|...|+. ++|+..|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555667777777777777776654 333445556666666666 7777777776643 34445555554444
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001966 626 KL-----ELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVD---KAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAG 697 (989)
Q Consensus 626 ~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 697 (989)
.+ ++++|+..|++..+.|... .+..|...|...+..+ ++.+.+......| +......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 5667777777776655332 4445555555444332 2344444443333 2334445555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc----CCHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE---KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS----NKLQE 770 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 770 (989)
.++++......+.+.-...++..+..+...|...| +.++|++.|++..+.++++...+..|+..|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 44443333222221111112225555666666666 666666666666666665555555555555443 46666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHhHHH
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQ-Y--CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG-----NRSEVF 842 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 842 (989)
|...|++.. . -+...+..+... + ...+++++|++.|++..+.| +...+..|+..|. .| ++++|+
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 666666655 2 233444445544 2 34556666666666665533 4445555555554 33 566666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHH
Q 001966 843 VVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRL 914 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 914 (989)
..|++.. .| +...+..|+.+|.. ..++++|.+.|+++.+.| +..+...|+.+|.. ..+.++|...
T Consensus 308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 6666554 11 33355555555544 225666666666665544 23344555555543 3456666666
Q ss_pred HHHHHHCC
Q 001966 915 LNEMGESG 922 (989)
Q Consensus 915 ~~~~~~~~ 922 (989)
++++.+.+
T Consensus 381 ~~~A~~~g 388 (452)
T 3e4b_A 381 SQLAKAQD 388 (452)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
Confidence 66666555
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=2.6e-15 Score=161.68 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEK-LEQALELFRDMLEKGLASTLSFNTLIEF 761 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 761 (989)
...|..+...+.+.|++++|+..++++++.+ |.+..+|+.+..++...|+ +++|+..|+++++.+|.+..+|..++.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888889999999999999999874 6688999999999999996 9999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHhH
Q 001966 762 LCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR-MGNRSE 840 (989)
Q Consensus 762 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 840 (989)
+...|++++|+..|+++++... .+...|..+..++...|++++|+..|+++++.. +.+..+|+.++.++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999998642 377899999999999999999999999999853 4457799999999999 666588
Q ss_pred H-----HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC------
Q 001966 841 V-----FVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE------ 906 (989)
Q Consensus 841 A-----~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 906 (989)
| +..|+++++ +.|+.. .|..++.++...| ++++|++.++++ +.++. +..++..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccc
Confidence 8 589999999 889766 8888899998888 699999999998 65544 8889999999999874
Q ss_pred --C-HHHHHHHHHHH-HHCCCccCHHhHHHHHHHHHhc
Q 001966 907 --E-YSEALRLLNEM-GESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 907 --~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
+ +++|+++++++ ++..|. ....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence 3 59999999999 888876 777888887766544
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=4.6e-15 Score=165.51 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001966 754 SFNTLIEFLCISN---KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV----QNMEKAKQLFLEMQQRNLKPATITYR 826 (989)
Q Consensus 754 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~ 826 (989)
++..|+..|...| ++++|+..|++..+.| .++...+..+...|... +++++|++.|++.. +-+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 4444555555555 4555555555555443 22333333344444322 34555555555543 22233344
Q ss_pred HHHHH-H--HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 827 SLLNG-Y--NRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG-----NVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 827 ~l~~~-~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
.|+.. + ...+++++|+..|++..+.| +...+..|+.+|. .| ++++|++.|+++. . -++.++..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 44443 2 23445555555555554432 3334444444443 33 4555555555544 1 144445555
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 001966 899 IKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDFLR----EGVMDYAAKVLECMASF 956 (989)
Q Consensus 899 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 956 (989)
+..|.. ..++++|...|+++.+.+ ++.+...|+..|.. ..+..+|..+++++.+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 544443 224555555555554443 33444455554443 23445555555555443
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=8.1e-14 Score=144.75 Aligned_cols=224 Identities=16% Similarity=0.088 Sum_probs=187.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCI----SNKLQEAHQLLDAMLEEQVNPNHDTYTT 792 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 792 (989)
+..++..+...+...|++++|+..|++..+ +.+..++..++..|.. .+++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 566777778888888888888888888887 3455677788888888 888888888888888764 6777888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 793 LINQYCK----VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR----MGNRSEVFVVFEEMLGKGIEPDNFTYYVMI 864 (989)
Q Consensus 793 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 864 (989)
+...|.. .+++++|++.|++..+.+ +..++..++..|.. .+++++|+..|+++++.+ +...+..++
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 8888888 899999999999888753 67788888888888 899999999999998843 456777888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 865 DAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 865 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
.++.. .+++++|++.++++.+.+ +..++..++.+|.. .+++++|+..++++++.+ ++.++..++.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 88887 899999999999998864 56888889999999 999999999999999886 37788899999
Q ss_pred HHh----cCChhHHHHHHHHHHhCC
Q 001966 937 FLR----EGVMDYAAKVLECMASFG 957 (989)
Q Consensus 937 ~~~----~g~~~~A~~~~~~~~~~~ 957 (989)
|.. .|++++|.+.++++.+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 998 999999999999988753
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=4.9e-15 Score=154.07 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=170.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C--ChhhHHHHHHHH
Q 001966 686 YNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-A--STLSFNTLIEFL 762 (989)
Q Consensus 686 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~--~~~~~~~l~~~~ 762 (989)
+......+...|++++|+..|+++.+.. |.+...+..+...+...|++++|++.++++++... + ...++..++..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566667777777777777777653 44455666777777777777777777777777322 1 122367777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVF 842 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 842 (989)
...|++++|+..+++..+... .+...+..++..|...|++++|++.|++..+. .+.+..++..++..+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877776432 24567777788888888888888888877764 2334566777773444455888888
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHccCCHHHH
Q 001966 843 VVFEEMLGKGIEPDN-FTYYVMIDAHCKEGN---VMEALKLKDLIFDKR-MPIS------AEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A 911 (989)
..++++++ +.|+. ..+..++.++...|+ +++|+..++++++.. ..|+ ..+|..++..|...|++++|
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888 66764 366677777777777 777888888887652 1122 25777888888888888888
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
+..++++++..|+ ++.++-.+.......
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHC------
T ss_pred HHHHHHHHhcCcc-HHHHHHHhhhhhccc
Confidence 8888888888877 777776666554443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=4.4e-15 Score=154.70 Aligned_cols=245 Identities=10% Similarity=-0.047 Sum_probs=112.5
Q ss_pred CChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001966 697 GDLTEPFQLFDEMTKRGV---PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQ 773 (989)
Q Consensus 697 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 773 (989)
|++++|+..++++.+... +.+..++..++..+...|++++|+..|+++++..+.+..++..++..+...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555554311 11234444555555555555555555555555555455555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 001966 774 LLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGI 853 (989)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 853 (989)
.++++++.. +.+...+..++..|...|++++|+..|+++.+ ..|+..........+...|++++|...+++++. .
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~ 173 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE--K 173 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH--H
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh--c
Confidence 555555431 11334445555555555555555555555554 223322222222233344555555555555544 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 854 EPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI---SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 854 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
.|+......++..+...++.++|++.++++++..+.. +...+..++.++.+.|++++|...++++++..|+ +.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~--- 249 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF--- 249 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---
Confidence 3332222234444444555555555555554432210 1344555555555555555555555555554433 21
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 001966 931 RTVANDFLREGVMDYAAKVL 950 (989)
Q Consensus 931 ~~l~~~~~~~g~~~~A~~~~ 950 (989)
...+.++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 12234444455555554443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=3.9e-14 Score=145.24 Aligned_cols=205 Identities=11% Similarity=-0.019 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001966 753 LSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGY 832 (989)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 832 (989)
..+..++..+...|++++|...++++++.. +.+...+..++..|...|++++|++.++++.+.. +.+...+..++..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 345555555666666666666666665432 2245556666666666666666666666666532 33455666666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
...|++++|...++++++.+..|+.. .+..++.++...|++++|++.++++++..+. +...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766533445443 5666667777777777777777777766544 566777777777777777777
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
...++++++..|. +...+..++.++...|++++|.+.++++.+. .|+..
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 243 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSL 243 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCH
Confidence 7777777776665 6667777777777777777777777777653 45443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=4.6e-15 Score=154.55 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=200.6
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001966 730 KEEKLEQALELFRDMLEKGL----ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEK 805 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 805 (989)
..|++++|+..++++++..+ .+..++..++..+...|++++|...++++++.. +.+...+..++..|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45789999999999998743 346688899999999999999999999999763 3368899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 806 AKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 806 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
|++.|++..+.. +.+..++..++..+...|++++|...++++++ +.|+..........+...|++++|+..++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999843 44578999999999999999999999999999 778777555555666778999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 886 KRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL---GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 886 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
..+. +...+ .++..+...++.++|...++++++..+.. ++.++..++.+|...|++++|...++++++. .|+.
T Consensus 173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 6544 44444 47777888999999999999998776542 2678999999999999999999999999864 5643
Q ss_pred hhHHHHHhhhhcCCChhhHHHHH
Q 001966 963 ISLADIVKGENSGVDLDESKDLM 985 (989)
Q Consensus 963 ~~~~~l~~~~~~~g~~~~a~~~~ 985 (989)
. ......+...|++++|.+.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22355566778888877654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=6.4e-15 Score=150.17 Aligned_cols=208 Identities=14% Similarity=0.092 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN 833 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 833 (989)
.+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|++.++++.+.. +.+..++..++..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 44444555555555555555555555432 2234555555555555566666666665555531 234455566666666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 912 (989)
..|++++|...++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +...+..++.++...|++++|+
T Consensus 103 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665 4443 335555666666666666666666666665443 5666666677777777777777
Q ss_pred HHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHH
Q 001966 913 RLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIV 969 (989)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 969 (989)
..++++++..|. ++.++..++.+|...|++++|.+.++++.+. .|+ ...+..+.
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 234 (243)
T 2q7f_A 180 SQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHT
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHH
Confidence 777776666655 5666677777777777777777777766553 454 33344333
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=5.6e-14 Score=141.09 Aligned_cols=208 Identities=10% Similarity=-0.029 Sum_probs=139.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 830 (989)
+...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|++.++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455556666666666666666666666532 2245566666666666677777777776666532 334556667777
Q ss_pred HHHhc-CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 001966 831 GYNRM-GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY 908 (989)
Q Consensus 831 ~~~~~-g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 908 (989)
.+... |++++|...++++++.+..|+.. .+..++.++...|++++|++.++++++..+. +...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777633345433 6666777777777777777777777776544 677777777777778888
Q ss_pred HHHHHHHHHHHHCCC-ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 909 SEALRLLNEMGESGF-RLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
++|...++++++..| . ++..+..++..+...|+.++|...++.+.+. .|+...
T Consensus 164 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~ 217 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVL-QADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHH
Confidence 888888887777766 4 6667777777777778888777777777543 465433
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=2.5e-13 Score=140.98 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=197.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCK----VQNMEKAKQLFLEMQQRNLKPATITY 825 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 825 (989)
.+..++..++..+...|++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45678888999999999999999999999983 356788889999999 999999999999999864 77889
Q ss_pred HHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 826 RSLLNGYNR----MGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 826 ~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
..++..|.. .+++++|+..|++.++.+ +...+..++..+.. .+++++|++.++++.+.+ +..++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 999999999 999999999999999843 66788899999999 999999999999999875 6788999
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcccchhHHHHH
Q 001966 898 IIKALCK----REEYSEALRLLNEMGESGFRLGFASCRTVANDFLR----EGVMDYAAKVLECMASFGWVSNSISLADIV 969 (989)
Q Consensus 898 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 969 (989)
++..|.. .+++++|+..++++.+.+ ++.++..++.+|.. .+++++|...++++.+.+ +...+..++
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 9999998 999999999999999885 67889999999999 999999999999998763 367788899
Q ss_pred hhhhc----CCChhhHHHHHhhh
Q 001966 970 KGENS----GVDLDESKDLMKQT 988 (989)
Q Consensus 970 ~~~~~----~g~~~~a~~~~~~~ 988 (989)
..+.. .|++++|.+.+++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHH
Confidence 99988 99999999998763
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=9.6e-15 Score=148.84 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 716 LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN 795 (989)
Q Consensus 716 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 795 (989)
.....|..+...+...|++++|+..|+++++..+.+..++..++..+...|++++|+..++++.+.. +.+...+..++.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3556788888899999999999999999999998889999999999999999999999999999763 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 001966 796 QYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVM 874 (989)
Q Consensus 796 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 874 (989)
.+...|++++|++.++++.+.. +.+...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998853 45677899999999999999999999999998 6675 457888899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 875 EALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
+|++.++++++..+. +..++..++.++...|++++|...++++++..|+ ++.++..++......|
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC------
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHhhcc
Confidence 999999999988655 7889999999999999999999999999999988 7887777665544433
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=7.6e-14 Score=143.04 Aligned_cols=208 Identities=18% Similarity=0.080 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQY 797 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 797 (989)
...+..++..+...|++++|++.|+++++..+.+..++..++..+...|++++|.+.++++.+.. +.+...+..++..|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455566666666667777777776666666666666677777777777777777777776542 22556677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVME 875 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 875 (989)
...|++++|+++++++.+.+..| +...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777776632334 355777778888888888888888888887 5564 4477778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
|...++++++..+. +...+..++..+...|++++|.+.++++++..|+ ++...
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 88888888877654 7778888888888888888888888888888766 55443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=7e-15 Score=163.12 Aligned_cols=271 Identities=13% Similarity=0.080 Sum_probs=128.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CC
Q 001966 647 DVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPN----TLTYNVLIDGFCKAGDLTEPFQLFDEMTKR----GVP-LD 717 (989)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~ 717 (989)
....+......+...|++++|...|+++++.... + ..++..+...+...|++++|...++++... +.+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455555666666666666666666655211 2 234555666666666666666666655331 111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC----hhhHHHHHHHHHHcCC--------------------HHHH
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGL--AS----TLSFNTLIEFLCISNK--------------------LQEA 771 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~--------------------~~~A 771 (989)
..++..+...+...|++++|+..++++++..+ .+ ..++..++..+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 33455555566666666666666666555422 11 2244555555555555 5555
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHhHH
Q 001966 772 HQLLDAMLEE----QVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN-LKPA----TITYRSLLNGYNRMGNRSEV 841 (989)
Q Consensus 772 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A 841 (989)
...+++.++. +..+ ...++..++..|...|++++|+..+++..+.. -.++ ..++..++..+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 5555544321 0000 11234444445555555555555555544320 0011 11444444555555555555
Q ss_pred HHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHH
Q 001966 842 FVVFEEMLGKGIEPD-------NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYS 909 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 909 (989)
...++++++ +.|+ ..++..++.++...|++++|++.++++++.... .+ ..++..++.++...|+++
T Consensus 247 ~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 247 SEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 555555444 1111 113344444555555555555555554432111 01 234444455555555555
Q ss_pred HHHHHHHHHHH
Q 001966 910 EALRLLNEMGE 920 (989)
Q Consensus 910 ~A~~~~~~~~~ 920 (989)
+|...++++++
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.6e-13 Score=137.72 Aligned_cols=213 Identities=10% Similarity=-0.011 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 716 LDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLIN 795 (989)
Q Consensus 716 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 795 (989)
.+...+..++..+...|++++|++.++++++..+.+..++..++..+...|++++|...++++.+.. +.+...+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3566777788888888888888888888888888777888888888888888888888888888653 336677888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 001966 796 QYCKV-QNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGN 872 (989)
Q Consensus 796 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 872 (989)
.+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|...++++++ ..|+ ...+..++.++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCC
Confidence 88889 999999999998887322333 56788888999999999999999999988 6675 4478888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 932 (989)
+++|.+.++++++..+..+...+..++..+...|+.++|..+++.+.+..|+ ++.....
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~ 221 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 9999999999988765237888888888889999999999999998887766 6555443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=1.6e-14 Score=160.59 Aligned_cols=265 Identities=17% Similarity=0.147 Sum_probs=168.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCChhhHHHH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLDG----SVYNALLSGCCKEEKLEQALELFRDMLEK------GLASTLSFNTL 758 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l 758 (989)
+...+...|++++|...|+++.+.+ +.+. .++..+...+...|++++|+..++++++. .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344455555555555555555432 2222 24445555555555555555555555443 11233455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEE----QVNP-NHDTYTTLINQYCKVQN-----------------MEKAKQLFLEMQQR 816 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~ 816 (989)
+..|...|++++|...++++++. +..+ ...++..++..|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666665532 1011 23456666667777777 77777777665441
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 817 ----NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-------FTYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 817 ----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
+..+ ...++..++..+...|++++|...++++++ +.|+. ..+..++.++...|++++|++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1111 134677788888888888888888888877 33221 156677888888899999998888887
Q ss_pred hCCCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 885 DKRMP-----ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 885 ~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+.... ....++..++.++...|++++|...++++++..++. ...++..++.+|...|++++|.+.+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 64221 114677888888999999999999998887653221 24577889999999999999999998887
Q ss_pred hC
Q 001966 955 SF 956 (989)
Q Consensus 955 ~~ 956 (989)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=7.1e-14 Score=135.24 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+...|..++..|...|++++|++.|++..+.. +-+..++..++.+|...|++++|...++++.. ..|+.. .+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 56778889999999999999999999988843 34567888999999999999999999999988 667554 677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
..+...+++++|.+.++++.+..+. +..++..++.++.+.|++++|++.++++++..|. ++.++..+|.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8888999999999999999988765 8889999999999999999999999999999888 8999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccc
Q 001966 945 YAAKVLECMASFGWVSNS 962 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~ 962 (989)
+|.+.++++++. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999998764 5653
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=2.4e-11 Score=139.47 Aligned_cols=454 Identities=11% Similarity=0.044 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 001966 490 QEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGE---MQTAGRFF 566 (989)
Q Consensus 490 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 566 (989)
.+.+..|++....+. -|..+|..++..+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|. ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344555566655544 48889999999988889999999999999886 45567778888888888888 99999999
Q ss_pred HHHHHCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHC-CC-CC-CHHHHHHHHHHHHh---------
Q 001966 567 NEMLNSG-LVPNDVIYTSIVDGYCKEGNI--------AEAISKFRCMLAR-GI-LP-EVQTYSVLINGLSK--------- 625 (989)
Q Consensus 567 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~p-~~~~~~~li~~~~~--------- 625 (989)
++.+... ..|++..|...+....+.++. +...++|+..+.. |. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988754 137788888877766665543 3344677665543 54 44 45677777765432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 001966 626 KLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQL 705 (989)
Q Consensus 626 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 705 (989)
.++++.+..+|..++......-..+|..... +.+.-+...+.+++.+. ..+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHH
Confidence 3346677778877775311111222222211 11110000111111110 0122223333
Q ss_pred HHHHHH--CC----C------------CC----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCChh
Q 001966 706 FDEMTK--RG----V------------PL----D---GSVYNALLSGCCKEE-------KLEQALELFRDMLEKGLASTL 753 (989)
Q Consensus 706 ~~~~~~--~~----~------------~~----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~ 753 (989)
+.++.. .+ + |+ + ...|...+..-...+ ..+.+..+|++++...+....
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~ 344 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPE 344 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHH
Confidence 332211 00 0 10 0 134555554433322 134456788888888887888
Q ss_pred hHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC--
Q 001966 754 SFNTLIEFLCISNKLQEAH-QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN---------LKPA-- 821 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~-- 821 (989)
.|...+..+...|+.++|. ++|++.+.. ++.+...|...+...-..|++++|.++|+++.+.. -.|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 8888888888888888886 888888864 33466667777888888888888888888887531 0131
Q ss_pred ----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 001966 822 ----------TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNFTYYVMIDAHCKE-GNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 822 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 889 (989)
..+|...+....+.|+.+.|..+|.++++. + .+....|...+....+. ++++.|.++|+.+++.-+.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 236777777777888888999999888873 1 11233444444444444 4488899998888887433
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHH
Q 001966 890 ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
+...|...++.....|+.+.|..+|+++++..+++ ....|..++..-.+.|+.+.+.++.+++.+. .|+......
T Consensus 503 -~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~ 579 (679)
T 4e6h_A 503 -DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEE 579 (679)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHH
T ss_pred -chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHH
Confidence 77777788888888888999999999888876632 3456777888888888888888888888765 566544444
Q ss_pred HHhhh
Q 001966 968 IVKGE 972 (989)
Q Consensus 968 l~~~~ 972 (989)
+.+-|
T Consensus 580 f~~ry 584 (679)
T 4e6h_A 580 FTNKY 584 (679)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44444
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=3.1e-14 Score=159.87 Aligned_cols=215 Identities=11% Similarity=0.021 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 733 KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKL-QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFL 811 (989)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 811 (989)
.+++++..+++.....+.+...+..++..+...|++ ++|+..|++.++.. +.+...|..++..|...|++++|++.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356777777776666666777777777777777777 88888777777653 2246677777777777778888887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc--------CCH
Q 001966 812 EMQQRNLKPATITYRSLLNGYNRM---------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE--------GNV 873 (989)
Q Consensus 812 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~--------g~~ 873 (989)
+..+ ..|+..++..++..+... |++++|+..|+++++ +.|+.. .|..++.++... |++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 7777 456667777777777777 777777777777777 666544 677777777777 777
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 874 MEALKLKDLIFDKRMP--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
++|++.|+++++.++. .+..+|..++.+|...|++++|+..|+++++..|+ ++.++..++.++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777776541 27777777777777777777777777777777776 67777777777777777777776654
Q ss_pred HH
Q 001966 952 CM 953 (989)
Q Consensus 952 ~~ 953 (989)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 33
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.9e-14 Score=159.57 Aligned_cols=303 Identities=16% Similarity=0.103 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------
Q 001966 680 EPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLD----GSVYNALLSGCCKEEKLEQALELFRDMLEKGL------ 749 (989)
Q Consensus 680 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 749 (989)
......+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|+..+++++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456677788888999999999999999998863 334 35788889999999999999999999876421
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPN----HDTYTTLINQYCKVQN--------------------ME 804 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~ 804 (989)
....++..++..+...|++++|...+++.++... .++ ..++..++..|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2345778889999999999999999999986411 112 3478888999999999 99
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHH
Q 001966 805 KAKQLFLEMQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDN----FTYYVMIDAHCKEGNVM 874 (989)
Q Consensus 805 ~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~----~~~~~l~~~~~~~g~~~ 874 (989)
+|++.+++..+. +..|. ..++..++..+...|++++|...++++++. ...++. .++..++.++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999988652 11222 347888999999999999999999999872 111221 26777889999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChh
Q 001966 875 EALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMD 944 (989)
Q Consensus 875 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 944 (989)
+|+..++++++..+. .+ ..++..++.++...|++++|...++++++..+.. ...++..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999865322 12 5678899999999999999999999998764331 1567889999999999999
Q ss_pred HHHHHHHHHHhCCCcccc-----hhHHHHHhhhhcCCChhhHHH
Q 001966 945 YAAKVLECMASFGWVSNS-----ISLADIVKGENSGVDLDESKD 983 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~ 983 (989)
+|.+.++++++..-.... ..+..++..+...|+...+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 999999999875222121 245667777777776655443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=1.7e-14 Score=160.33 Aligned_cols=270 Identities=10% Similarity=0.011 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLAST----LSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVNP-NHDT 789 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~ 789 (989)
..+..+...+...|++++|+..|+++++..+.+. .++..++..+...|++++|...+++.++. +..| ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455667788899999999999999999988654 47888999999999999999999988743 1112 3467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------HhHHHHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQR----NLKP-ATITYRSLLNGYNRMGN-----------------RSEVFVVFEE 847 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 847 (989)
+..+...|...|++++|+..+++..+. +-.| ...++..++..|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999988763 1122 24578899999999999 9999999998
Q ss_pred HHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 848 MLGK----GIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 848 ~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
.++. +..|.. ..+..++.++...|++++|++.++++++.... .+ ..++..++.++...|++++|+..+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 8761 112222 26777889999999999999999999875221 12 23788999999999999999999999
Q ss_pred HHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----Cccc-chhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 918 MGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMASFG----WVSN-SISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 918 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
+++..+.. ...++..++.+|...|++++|...++++++.. ..+. ...+..++..+...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 98765431 25678999999999999999999999987631 1111 35788999999999999999999886
Q ss_pred h
Q 001966 988 T 988 (989)
Q Consensus 988 ~ 988 (989)
.
T Consensus 369 a 369 (411)
T 4a1s_A 369 H 369 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=2e-14 Score=161.41 Aligned_cols=213 Identities=11% Similarity=0.022 Sum_probs=158.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKL-EQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLD 776 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 776 (989)
.++++++.+++.... .+.+...+..+...+...|++ ++|++.|+++++..|.+..++..++..|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466666777766554 245677777777778788888 888888888888777777778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHh
Q 001966 777 AMLEEQVNPNHDTYTTLINQYCKV---------QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM--------GNRS 839 (989)
Q Consensus 777 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 839 (989)
+.++. .|+...+..+...|... |++++|++.|++..+.. +.+...|..++.+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 87765 45567777777777777 88888888888877742 33466777777777777 7788
Q ss_pred HHHHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEP---D-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLL 915 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 915 (989)
+|+..|+++++ +.| + ...+..++.++...|++++|++.++++++..+. +..++..++.++...|++++|+..+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888877 666 3 346777778888888888888888888777655 6777777888888888777777765
Q ss_pred HH
Q 001966 916 NE 917 (989)
Q Consensus 916 ~~ 917 (989)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=4.9e-14 Score=151.58 Aligned_cols=265 Identities=18% Similarity=0.158 Sum_probs=169.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCChhhHHHH
Q 001966 689 LIDGFCKAGDLTEPFQLFDEMTKRGVPLD----GSVYNALLSGCCKEEKLEQALELFRDMLEKG------LASTLSFNTL 758 (989)
Q Consensus 689 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l 758 (989)
....+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|++.+++++... +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3444555555555555555555542 222 2344555555556666666666665554331 1223355566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 001966 759 IEFLCISNKLQEAHQLLDAMLEEQV-NPN----HDTYTTLINQYCKVQN--------------------MEKAKQLFLEM 813 (989)
Q Consensus 759 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 813 (989)
+..+...|++++|...+++.++... .++ ..++..++..+...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6666666777777766666553200 111 2356666667777777 77777777665
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 001966 814 QQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---D----NFTYYVMIDAHCKEGNVMEALKLKD 881 (989)
Q Consensus 814 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~ 881 (989)
... +..+. ..++..++..+...|++++|...++++++ +.| + ..++..++..+...|++++|.+.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 431 11111 34677788888888888888888888876 221 1 1156677788888899999999888
Q ss_pred HHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 882 LIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 882 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
++++.... .+ ..++..++.++...|++++|...++++++..+.. ...++..++.+|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 88754211 11 5567788888999999999999998887654321 14577889999999999999999999
Q ss_pred HHHhC
Q 001966 952 CMASF 956 (989)
Q Consensus 952 ~~~~~ 956 (989)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=8.2e-13 Score=139.54 Aligned_cols=220 Identities=12% Similarity=0.021 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 735 EQALELFRDMLEKGLASTLSFNTLIEFLCI-------SNKL-------QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
++|+..|++++...|.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567777777777777777777777776653 4664 78888888887631122556777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH-hcCCHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPA-TI-TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHC-KEGNVMEA 876 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~-~~g~~~~A 876 (989)
|++++|.++|++..+ +.|+ .. +|..++..+.+.|++++|..+|+++++ ..|+.. .|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888877 4454 33 778888888888888888888888887 455433 4433333322 25888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES---GFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.++|+++++..+. +...|..++..+.+.|++++|+.+|+++++. .|+.....|..++..+...|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888877555 7788888888888888888888888888875 22224667777888888888888888888887
Q ss_pred HhCCCccc
Q 001966 954 ASFGWVSN 961 (989)
Q Consensus 954 ~~~~~~p~ 961 (989)
.+. .|+
T Consensus 268 ~~~--~p~ 273 (308)
T 2ond_A 268 FTA--FRE 273 (308)
T ss_dssp HHH--TTT
T ss_pred HHH--ccc
Confidence 654 454
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=5.7e-11 Score=136.41 Aligned_cols=443 Identities=10% Similarity=0.057 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHH
Q 001966 455 RQINAILGEMITRGLKPNAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKR---MDEARIYL 531 (989)
Q Consensus 455 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 531 (989)
.+....+++.+..+ +-|..+|..++....+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34455566666554 568999999999999999999999999999986 44467788888888888888 99999999
Q ss_pred HHHHHcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHhHHHHHHHHH---------h
Q 001966 532 VEMLRRGL-KPNIHSFRAFILGYCMAGEM--------QTAGRFFNEMLN-SGL-VP-NDVIYTSIVDGYC---------K 590 (989)
Q Consensus 532 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~ 590 (989)
++.+.... .|++..|...+.-....++. +...++|+.++. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99998641 37888888877766665543 334578887664 455 44 3467887776544 2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQL 670 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 670 (989)
.++++.+..+|+.++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 34578889999998853111122334332221111111 111111111 11123334444
Q ss_pred HHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCH
Q 001966 671 YEEMCEK--GVE---------------P-----N---TLTYNVLIDGFCKAG-------DLTEPFQLFDEMTKRGVPLDG 718 (989)
Q Consensus 671 ~~~~~~~--~~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~ 718 (989)
+.++... ++. | + ...|...+.---..+ ..+.+..+|++++.. ++.+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 4332210 110 1 0 123444443222211 123355678888876 57789
Q ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC--
Q 001966 719 SVYNALLSGCCKEEKLEQAL-ELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ---------VNPN-- 786 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~-- 786 (989)
..|...+..+...|+.++|. ++|++++...|.+...+...+......|++++|..+|++++... -.|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999999998999999997 99999999888777778888999999999999999999988631 0132
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCC
Q 001966 787 ----------HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG-NRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 787 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p 855 (989)
...|...+....+.|..+.|..+|.+..+.-.......|...+..-.+.| +.+.|..+|+..++ ..|
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk--~~p 501 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK--YFA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH--HHT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCC
Confidence 24688888888889999999999999987511223445544444444444 58999999999999 566
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 856 DNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 856 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.. .+...++.....|+.+.|..+|++++...+++ ....|...+..-.+.|+.+.+.++.+++.+..|+
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555 55567777788899999999999999875432 4567888888889999999999999999999877
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.9e-13 Score=132.24 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=150.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 820 PATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 820 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
.+..+|..++..|...|++++|+..|+++++ +.|+.. ++..++.++.+.|++++|+..++++....+. +..++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHH
Confidence 4577899999999999999999999999999 889665 8888999999999999999999999988766 88999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+..+...+++++|...+.++.+..|. +..++..+|.+|...|++++|++.++++++. .|+ ...+..++..+...|+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCC
Confidence 99999999999999999999999988 8999999999999999999999999999875 674 7889999999999999
Q ss_pred hhhHHHHHhhh
Q 001966 978 LDESKDLMKQT 988 (989)
Q Consensus 978 ~~~a~~~~~~~ 988 (989)
+++|++.+++.
T Consensus 157 ~~~A~~~~~~a 167 (184)
T 3vtx_A 157 RDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=5e-14 Score=151.52 Aligned_cols=270 Identities=13% Similarity=0.041 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 001966 719 SVYNALLSGCCKEEKLEQALELFRDMLEKGLAS----TLSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVNP-NHDT 789 (989)
Q Consensus 719 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~ 789 (989)
..+......+...|++++|+..|+++++..+.+ ...+..++..+...|++++|...+++.++. +..| ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345566778889999999999999999988755 357788999999999999999999987642 1111 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHHH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPA----TITYRSLLNGYNRMGN--------------------RSEVFVV 844 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 844 (989)
+..++..+...|++++|+..+++..+... .++ ..++..++..+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88889999999999999999998765310 112 3478889999999999 9999999
Q ss_pred HHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHH
Q 001966 845 FEEMLGK----GIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRL 914 (989)
Q Consensus 845 ~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~ 914 (989)
+++.++. +..|.. ..+..++..+...|++++|++.++++++.... ++ ..++..++.++...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988761 112222 26777889999999999999999999864211 12 33788999999999999999999
Q ss_pred HHHHHHCCCcc-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----Cccc-chhHHHHHhhhhcCCChhhHHHH
Q 001966 915 LNEMGESGFRL-----GFASCRTVANDFLREGVMDYAAKVLECMASFG----WVSN-SISLADIVKGENSGVDLDESKDL 984 (989)
Q Consensus 915 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 984 (989)
++++++..+.. ...++..++.+|...|++++|...++++++.. -.+. ...+..++..+...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99998654331 16678899999999999999999999987531 1111 34778999999999999999999
Q ss_pred Hhhh
Q 001966 985 MKQT 988 (989)
Q Consensus 985 ~~~~ 988 (989)
+++.
T Consensus 326 ~~~a 329 (338)
T 3ro2_A 326 AEKH 329 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=7e-13 Score=145.35 Aligned_cols=230 Identities=10% Similarity=0.035 Sum_probs=167.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---C-CHHHHH
Q 001966 724 LLSGCCKEEKLEQALELFRDMLEKGL------ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QVN---P-NHDTYT 791 (989)
Q Consensus 724 l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~-~~~~~~ 791 (989)
....+...|++++|+..++++++... ....++..++..|...|++++|+..+++.++. ... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55667778888888888888876411 13356778888888888888888888887742 111 1 135677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCCHH-HHH
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK----GIEPDNF-TYY 861 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~-~~~ 861 (989)
.++..|...|++++|++.|++..+. +..+. ..++..++.+|...|++++|...++++++. +..|... ++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888999999999988887652 11111 247888889999999999999999988871 2224443 777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRM----PISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
.++.++...|++++|.+.++++++... +.....+..++..+...|+ +++|+.++++. ........++..+|
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 888999999999999999998876411 1122335678888888888 78888888775 11112355678899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 001966 935 NDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.+|...|++++|...++++.+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988865
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=2.5e-13 Score=158.07 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVM 863 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 863 (989)
+...|+.++..|.+.|++++|++.|++.++ +.|+ ..+|..++.+|.+.|++++|+..|+++++ +.|+.. .|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 457899999999999999999999999998 4555 77899999999999999999999999999 889765 89999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM 943 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 943 (989)
+.++.+.|++++|++.|+++++.++. +..+|..++.+|.+.|++++|+..|+++++..|+ ++.++..|+.+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999998876 8999999999999999999999999999999988 899999999999999999
Q ss_pred hHHHHHHHHHHhCCCccc
Q 001966 944 DYAAKVLECMASFGWVSN 961 (989)
Q Consensus 944 ~~A~~~~~~~~~~~~~p~ 961 (989)
++|.+.++++++. .|+
T Consensus 162 ~~A~~~~~kal~l--~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSI--VAD 177 (723)
T ss_dssp TTHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHh--Chh
Confidence 9999999998763 454
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=6.1e-12 Score=132.86 Aligned_cols=219 Identities=10% Similarity=0.099 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-cCCCChhhHHHHHHHHHH
Q 001966 700 TEPFQLFDEMTKRGVPLDGSVYNALLSGCCK-------EEKL-------EQALELFRDMLE-KGLASTLSFNTLIEFLCI 764 (989)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 764 (989)
++|...|+++... .|.+...|..++..+.. .|++ ++|..+|+++++ ..|.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677788887775 36677788877777653 4775 899999999998 577778889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHH
Q 001966 765 SNKLQEAHQLLDAMLEEQVNP-NHD-TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYN-RMGNRSEV 841 (989)
Q Consensus 765 ~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 841 (989)
.|++++|..+|+++++. .| +.. .|..++..+.+.|++++|+.+|++..+.. +++...|...+.... ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999975 34 333 78889999999999999999999998853 344555655444432 36999999
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 842 FVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKR-MPI--SAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 842 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
..+|+++++ ..|+.. .|..++..+.+.|++++|..+|+++++.. .+| ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998 677554 78888899999999999999999999862 232 578899999999999999999999999
Q ss_pred HHHCCCc
Q 001966 918 MGESGFR 924 (989)
Q Consensus 918 ~~~~~~~ 924 (989)
+++..|+
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9998876
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=1.4e-12 Score=143.01 Aligned_cols=228 Identities=7% Similarity=0.008 Sum_probs=181.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHH
Q 001966 756 NTLIEFLCISNKLQEAHQLLDAMLEEQ-VNPN----HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NL---KP-ATIT 824 (989)
Q Consensus 756 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p-~~~~ 824 (989)
...+..+...|++++|+..+++..+.- ..++ ..++..++..|...|++++|+..+++..+. .. .+ ...+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 346778889999999999999998531 1122 367888999999999999999999998763 11 11 1357
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DN----FTYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISA 892 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 892 (989)
+..++..|...|++++|...++++++ +.| +. .++..++.++...|++++|++.++++++ ...+...
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYS--MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 88999999999999999999999987 222 22 2788899999999999999999999998 3313357
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---c-CHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCccc-chh
Q 001966 893 EAYKAIIKALCKREEYSEALRLLNEMGESGFR---L-GFASCRTVANDFLREGV---MDYAAKVLECMASFGWVSN-SIS 964 (989)
Q Consensus 893 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~ 964 (989)
.++..++.++.+.|++++|...++++++..+. + ....+..++.+|...|+ +++|...+++. +..|+ ...
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 78999999999999999999999999876322 1 23336779999999999 67777777655 34554 567
Q ss_pred HHHHHhhhhcCCChhhHHHHHhhh
Q 001966 965 LADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 965 ~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+..++..+...|++++|...+++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999999999999998763
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=147.16 Aligned_cols=238 Identities=17% Similarity=0.130 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 001966 717 DGSVYNALLSGCCKEEKLEQALELFRDMLEK--------GLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE------Q 782 (989)
Q Consensus 717 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 782 (989)
+..++..+...+...|++++|+.+++++++. .+....++..++..+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666666676666666666652 2234455666777777777777777777766642 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---
Q 001966 783 VNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQR------NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK--- 851 (989)
Q Consensus 783 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 851 (989)
..| ....+..++..|...|++++|++.+++..+. +..| ...++..++..+...|++++|..+++++++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 3456677777778888888888888777653 1122 2446777888888888888888888888772
Q ss_pred ---CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CC-------CHHHHHHHHHHHHccCCHHHHHH
Q 001966 852 ---GIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRM-------PI-------SAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 852 ---g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~-------~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
+..|... ++..++.++...|++++|++.++++++..+ .+ ....+..++..+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1144333 667778888888888888888888875310 00 11223334444556667777777
Q ss_pred HHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 914 LLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.++++....+. .+.++..++.+|...|++++|.+.++++++
T Consensus 266 ~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88887776655 778889999999999999999999998865
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=6e-13 Score=154.93 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=138.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSL 828 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 828 (989)
.+..+++.|+..+.+.|++++|++.|++.++.. +-+..+|..++.+|.+.|++++|++.|++.++ +.|+ ..+|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 456678888888888899999999888888753 22567888888888888899999988888887 3454 6688888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREE 907 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 907 (989)
+.++...|++++|++.|+++++ +.|+.. .+..++.++.+.|++++|++.|+++++.++. +..+|..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 8888888899999999988888 788655 7888888888888999999999888888766 78888888888888899
Q ss_pred HHHHHHHHHHHHHCCC
Q 001966 908 YSEALRLLNEMGESGF 923 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~ 923 (989)
+++|.+.++++++..+
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 8888888888877653
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=1e-11 Score=124.70 Aligned_cols=207 Identities=12% Similarity=0.014 Sum_probs=138.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSL 828 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 828 (989)
.++..+...+..+...|++++|+..|++.++....++...+..++.++...|++++|++.|++..+. .|+ ..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3456777777778888888888888888776543356666666777778888888888888887773 343 5577777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--------TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI-SAEAYKAII 899 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 899 (989)
+.++...|++++|+..++++++ +.|+.. .|..++..+...|++++|++.++++++.++.. +..+|..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7888888888888888888877 566533 35666677777788888888888887754210 246677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc-hhHHHHHh
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS-ISLADIVK 970 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 970 (989)
.++...| ...++++....+. +...+ ........|.+++|...++++++. .|+. .....+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKY--ASEKAKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHH--HHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 7775544 3344555554433 33333 223344556679999999999874 6864 44444433
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=3.9e-12 Score=123.00 Aligned_cols=168 Identities=13% Similarity=-0.028 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDA 866 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 866 (989)
..+..++..+...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++++ ..|+ ...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 456677778888888888888888887642 44567888888888899999999999999888 5664 4477788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHH
Q 001966 867 HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 867 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 946 (989)
+...|++++|.+.++++.+..+. +...+..++.++...|++++|...++++++..|. ++.++..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887655 7888999999999999999999999999988877 788999999999999999999
Q ss_pred HHHHHHHHhCCCcccc
Q 001966 947 AKVLECMASFGWVSNS 962 (989)
Q Consensus 947 ~~~~~~~~~~~~~p~~ 962 (989)
.+.++++.+. .|+.
T Consensus 164 ~~~~~~~~~~--~~~~ 177 (186)
T 3as5_A 164 LPHFKKANEL--DEGA 177 (186)
T ss_dssp HHHHHHHHHH--HHCC
T ss_pred HHHHHHHHHc--CCCc
Confidence 9999988764 4543
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=7e-13 Score=140.71 Aligned_cols=236 Identities=12% Similarity=0.058 Sum_probs=174.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEE-------QVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR------N 817 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 817 (989)
...++..++..+...|++++|..+++++++. ........+..++..|...|++++|+..+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457888999999999999999999999862 12224567888999999999999999999998763 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 001966 818 LKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK------GIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK--- 886 (989)
Q Consensus 818 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 886 (989)
..| ...++..++..+...|++++|...++++++. +..|... .+..++.++...|++++|+++++++++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 123 3567889999999999999999999999872 2234333 6778889999999999999999999875
Q ss_pred ---C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-------c-------CHHhHHHHHHHHHhcCChhHHHH
Q 001966 887 ---R-MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-------L-------GFASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 887 ---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-------~~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
+ .+....++..++.++...|++++|...++++++..++ + ....+..++..+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1113567889999999999999999999999875321 0 12334445555666677778888
Q ss_pred HHHHHHhCCCccc-chhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 949 VLECMASFGWVSN-SISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 949 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.++.+... .|+ ...+..++..+...|++++|.+.+++.
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88877543 554 678899999999999999999999864
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=1.7e-11 Score=123.05 Aligned_cols=210 Identities=10% Similarity=0.041 Sum_probs=173.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001966 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGL-ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTL 793 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 793 (989)
+.|+..+......+...|++++|+..|+++++..+ ++...+..++.++...|++++|+..+++.++... .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 34678899999999999999999999999999998 8888888899999999999999999999998632 256789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HH-HHHHH
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQRNLKPAT-------ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NF-TYYVM 863 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~-~~~~l 863 (989)
+..|...|++++|++.|++..+.. +.+. .+|..++..+...|++++|+..|+++++ +.|+ .. .+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 999999999999999999999842 3334 4688889999999999999999999999 7888 55 77788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
+.++... +...++++...+.. +...+... .....+.+++|+..++++++..|+ ++.+...++.+.
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHH
Confidence 8888654 44556666665433 44444433 345667899999999999999988 787777776654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=3.4e-11 Score=131.46 Aligned_cols=231 Identities=11% Similarity=0.069 Sum_probs=154.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC---CC-CHHHH
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGL--A----STLSFNTLIEFLCISNKLQEAHQLLDAMLEE--QV---NP-NHDTY 790 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~~-~~~~~ 790 (989)
.....+...|++++|+..|+++.+... + ...++..++..|...|++++|...+++.++. .. .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888888776422 2 2346677778888888888888888877642 11 11 13466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCC-HHHHH
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQR----NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK---GIEPD-NFTYY 861 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~-~~~~~ 861 (989)
+.++..|...|++++|++.|++..+. +.++ ...++..++.+|...|++++|...++++++. ...|. ..++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 77778888888888888888777652 1111 1346777888888888888888888887761 01233 33677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRM----PISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
.++.++.+.|++++|...++++++... +.....+..+...+...|+ +++|+..+++. .........+..+|
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Confidence 777888888888888888888876421 1123345566666777777 77777777762 11111344567788
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 001966 935 NDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=1.6e-10 Score=126.02 Aligned_cols=264 Identities=12% Similarity=-0.007 Sum_probs=156.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCh----hhHHHHHHH
Q 001966 692 GFCKAGDLTEPFQLFDEMTKRGVPLDG----SVYNALLSGCCKEEKLEQALELFRDMLEKGL--AST----LSFNTLIEF 761 (989)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~l~~~ 761 (989)
.+...|++++|...+++........+. .++..+...+...|++++|...+++.+...+ .+. .++..++..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344556666666666665554211122 1344455556666667766666666655322 111 234556666
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHH
Q 001966 762 LCISNKLQEAHQLLDAMLEE----QVN--P-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL---KP-ATITYRSLLN 830 (989)
Q Consensus 762 ~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~ 830 (989)
+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++..+... .+ ...++..++.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77777777777777766532 111 2 123455566777777778887777777665211 11 2345667777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYY-----VMIDAHCKEGNVMEALKLKDLIFDKRMPI---SAEAYKAIIKA 901 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~ 901 (989)
.+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...++++.+..+.+ ....+..++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 777788888888888777652111111 1111 22344667788888888887776643321 12345667777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCc----cC-HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 902 LCKREEYSEALRLLNEMGESGFR----LG-FASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+...|++++|...++++++..+. ++ ..++..++.++...|++++|...++++.+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888888888777654221 11 23566777888888888888888777664
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.5e-10 Score=126.47 Aligned_cols=230 Identities=8% Similarity=-0.012 Sum_probs=181.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHH
Q 001966 755 FNTLIEFLCISNKLQEAHQLLDAMLEEQ-VNPN----HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NL---KP-ATI 823 (989)
Q Consensus 755 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p-~~~ 823 (989)
+...+..+...|++++|+..+++..+.. ..++ ..++..++..|...|++++|+..+++..+. .. .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 4456677889999999999999998531 1122 357888999999999999999999988762 11 11 145
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGK----GIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISAE 893 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 893 (989)
++..++.+|...|++++|...++++++. +..+. ..++..++.++...|++++|++.++++++ ..+. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 7889999999999999999999999872 11111 12677889999999999999999999998 5544 478
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---c-CHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCccc-chhH
Q 001966 894 AYKAIIKALCKREEYSEALRLLNEMGESGFR---L-GFASCRTVANDFLREGV---MDYAAKVLECMASFGWVSN-SISL 965 (989)
Q Consensus 894 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~ 965 (989)
++..++.++.+.|++++|...++++++.... + ....+..++..|...|+ +.+|...+++ .+..|+ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHH
Confidence 8999999999999999999999999886432 1 23456778888889999 7777777775 333454 5677
Q ss_pred HHHHhhhhcCCChhhHHHHHhhh
Q 001966 966 ADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 966 ~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..++..+...|++++|.+.+++.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999998864
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=8.6e-11 Score=128.18 Aligned_cols=266 Identities=12% Similarity=-0.017 Sum_probs=198.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Chh----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHH
Q 001966 722 NALLSGCCKEEKLEQALELFRDMLEKGLA-STL----SFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPNH----DTYT 791 (989)
Q Consensus 722 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 791 (989)
......+...|++++|...+++.+...+. +.. ++..++..+...|++++|...+++...... .++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455667899999999999999987663 222 566778889999999999999998874211 1122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCC-C-HHHH
Q 001966 792 TLINQYCKVQNMEKAKQLFLEMQQR----NLK--PA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKG--IEP-D-NFTY 860 (989)
Q Consensus 792 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p-~-~~~~ 860 (989)
.+...+...|++++|+..+++..+. +.. |. ...+..++..+...|++++|...+++.++.. ..+ . ..++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788899999999999999988763 222 32 3467788999999999999999999998821 111 1 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHccCCHHHHHHHHHHHHHCCCcc---CHHhHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI-S-AEAYK----AIIKALCKREEYSEALRLLNEMGESGFRL---GFASCR 931 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 931 (989)
..++..+...|++++|...++++.+....+ . ..... ..+..+...|++++|...++++.+..+.+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 778899999999999999999998642121 1 22211 33455789999999999999988765432 133567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCcccc-hhHHHHHhhhhcCCChhhHHHHHhh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASF----GWVSNS-ISLADIVKGENSGVDLDESKDLMKQ 987 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 987 (989)
.++.++...|++++|...++++.+. |..++. ..+..++..+...|+.++|.+.+++
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8999999999999999999988653 222232 3677888889999999999998875
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=2.3e-11 Score=127.10 Aligned_cols=221 Identities=11% Similarity=0.008 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 001966 734 LEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE----QVNPN-HDTYTTLINQYCKVQNMEKAKQ 808 (989)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 808 (989)
+++|...|+++ +..|...|++++|...|++.++. +..++ ..+|+.++.+|...|++++|+.
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666555 23455666777777666666532 11111 3466777777777778888877
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHH
Q 001966 809 LFLEMQQR----NLKP-ATITYRSLLNGYNRM-GNRSEVFVVFEEMLGKGIEPD-------NFTYYVMIDAHCKEGNVME 875 (989)
Q Consensus 809 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~ 875 (989)
.|++..+. |-.+ ...++..++..|... |++++|+..|+++++ +.|+ ..++..++..+.+.|++++
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77776652 1000 134678888888886 999999999999988 4442 2357778899999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC----HHhHHHHHHHHH--hcCCh
Q 001966 876 ALKLKDLIFDKRMPISA------EAYKAIIKALCKREEYSEALRLLNEMGESGFRLG----FASCRTVANDFL--REGVM 943 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~g~~ 943 (989)
|+..++++++..+.... ..|..++.++...|++++|+..++++++..|... ...+..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999987554222 2577888899999999999999999888766521 113445666664 45778
Q ss_pred hHHHHHHHHHHhCCCccc-chhHHHHHhhh
Q 001966 944 DYAAKVLECMASFGWVSN-SISLADIVKGE 972 (989)
Q Consensus 944 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 972 (989)
++|.+.|+++.. +.|+ ...+..+-..+
T Consensus 257 ~~A~~~~~~~~~--l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 257 SEHCKEFDNFMR--LDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHTTSSC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCc--cHHHHHHHHHHHHHHh
Confidence 888888877633 4564 33444444333
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=2.4e-11 Score=117.30 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|...++++++ ..|+ ...+..++..+...|++++|.+.++++++..+. +..++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34677888999999999999999999988 6664 447888899999999999999999999988655 8899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChh
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDLD 979 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 979 (989)
.+...|++++|...++++++..|. ++.++..++.++...|++++|...++++.+. .| +...+..++..+...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999877 8999999999999999999999999999875 46 4778999999999999999
Q ss_pred hHHHHHhhh
Q 001966 980 ESKDLMKQT 988 (989)
Q Consensus 980 ~a~~~~~~~ 988 (989)
+|.+.+++.
T Consensus 162 ~A~~~~~~~ 170 (186)
T 3as5_A 162 EALPHFKKA 170 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=6e-10 Score=112.84 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 737 ALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN-PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
|+..+++.+..+.++..++..++.++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666777766655555555567777777777888887777777654431 2456666777777777888888888877776
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 816 RNLKP-----ATITYRSLLNG--YNRMG--NRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 816 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
..| +..+...|+.+ ....| ++++|..+|+++.+ ..|+..+...+..++...|++++|.+.++.+.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455 24444555544 33334 77777777777766 4565333333344677777777777777766543
Q ss_pred ----------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 887 ----------RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 887 ----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
++. ++.++..++......|+ +|.++++++.+..|+ ++.+. ++.+....|+++.
T Consensus 241 ~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-hp~i~-----------d~~~k~~~Fd~~~ 303 (310)
T 3mv2_B 241 YYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-HAFIK-----------HHQEIDAKFDELV 303 (310)
T ss_dssp HHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-CHHHH-----------HHHHHHHHHHHHH
T ss_pred cccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-ChHHH-----------HHHHHHHHHHHHH
Confidence 122 56666566656666666 777777777777766 66554 4445555555554
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=3.5e-12 Score=117.80 Aligned_cols=144 Identities=10% Similarity=-0.073 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 906 (989)
|+..+...|++++|+..+++.+. ..|+.. .+..++.+|.+.|++++|++.++++++.++. +..+|..++.++.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34455566777777777777766 556544 5666777777778888888888887777655 7777778888888888
Q ss_pred CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHH-HHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 907 EYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKV-LECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
++++|+..|+++++..|+ ++.++..+|.+|.+.|++++|.+. ++++++. .|+ +..+......+..+|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 888888888888777777 777777888888888777665544 4666653 675 4455555555555554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=5.3e-11 Score=124.34 Aligned_cols=229 Identities=16% Similarity=0.097 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 736 QALELFRDMLEKGLASTLSFNTLIEFLCIS---NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
+|.+++++..+.-......+ . +.+. +++++|...|++. +..|...|++++|++.|++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 45666666665543221112 1 1222 2488888888776 4467789999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhc-CCHHHHHHH
Q 001966 813 MQQR----NLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-------NFTYYVMIDAHCKE-GNVMEALKL 879 (989)
Q Consensus 813 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~-g~~~~A~~~ 879 (989)
..+. +-+++ ..+|..++.+|...|++++|+..|+++++ +.|+ ..++..++.++... |++++|++.
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 8663 22222 46899999999999999999999999988 4332 23678889999996 999999999
Q ss_pred HHHHHhCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH------HhHHHHHHHHHhcCChhHHHH
Q 001966 880 KDLIFDKRMPI-S----AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGF------ASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 880 ~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 948 (989)
|+++++..+.. + ..++..++..+.+.|++++|+..++++++..++... ..+..++.++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999763321 1 457889999999999999999999999998776322 157889999999999999999
Q ss_pred HHHHHHhCCCcccch------hHHHHHhhhh--cCCChhhHHHHHhhh
Q 001966 949 VLECMASFGWVSNSI------SLADIVKGEN--SGVDLDESKDLMKQT 988 (989)
Q Consensus 949 ~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~ 988 (989)
.++++++ +.|+.. .+..+...+. ..+++++|.+.++++
T Consensus 221 ~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 221 TLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999865 466521 2344555553 567888998888654
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.32 E-value=3.7e-10 Score=116.10 Aligned_cols=230 Identities=7% Similarity=-0.032 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 001966 734 LEQALELFRDMLEKGLASTLSFNTLIEFLCISN--KLQEAHQLLDAMLEEQVNPNHDTYTTLINQY----CKV---QNME 804 (989)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 804 (989)
.++|+++++.++..+|....+|+.-...+...| +++++++.++.++....+ +..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 457788888888888777777777777777777 788888888888765322 344555444444 444 6788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh--HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC------HHH
Q 001966 805 KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRS--EVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN------VME 875 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~------~~~ 875 (989)
+++++++++.+.. +-+..+|..-...+.+.|.++ ++++.++++++ .+|.+. +|.....++...|. +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999988853 556778888888888888888 99999999998 777544 78877777777776 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHHCC---CccCHHhHHHHHHHHHhcCChhHHHHHHH
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYS-EALRLLNEMGESG---FRLGFASCRTVANDFLREGVMDYAAKVLE 951 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 951 (989)
+++++++++..++. |..+|..+...+.+.|+.. ++..+.+++.+.+ +. ++.++..++++|.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999998877 8999999999998888744 4556777766654 44 78889999999999999999999999
Q ss_pred HHHhCCCccc-chhHHHHHh
Q 001966 952 CMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 952 ~~~~~~~~p~-~~~~~~l~~ 970 (989)
++.+. +.|- ...|...++
T Consensus 283 ~l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHT-TCGGGHHHHHHHHH
T ss_pred HHHhc-cChHHHHHHHHHHh
Confidence 98642 5674 444544433
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=3.8e-11 Score=123.44 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=113.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 001966 750 ASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPN---HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPA-TIT 824 (989)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~ 824 (989)
.+...+..++..+.+.|++++|+..|+++++.... + ...+..++.+|.+.|++++|+..|++..+... .|. ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34445555555555666666666666665543211 1 34455555555555666666665555555210 011 234
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 825 YRSLLNGYNR--------MGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 825 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
+..++.++.. .|++++|+..|+++++ ..|+.. ....+... ..+.. . ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~--------------~~~~~---~-~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKI--------------RELRA---K-LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHH--------------HHHHH---H-HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHH--------------HHHHH---H-HHHHH
Confidence 4555555555 5555555555555555 344332 11111000 00000 0 01113
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCcccch
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLRE----------GVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
..++.+|.+.|++++|+..++++++..|+. .+.++..++.+|... |++++|...++++++. .|+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 667778888888888888888888776552 245677888888766 7778888888887764 56542
Q ss_pred ----hHHHHHhhhhcCCChhhHH
Q 001966 964 ----SLADIVKGENSGVDLDESK 982 (989)
Q Consensus 964 ----~~~~l~~~~~~~g~~~~a~ 982 (989)
....+...+...|+.+++.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344555555555555443
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=2.9e-11 Score=126.06 Aligned_cols=225 Identities=18% Similarity=0.159 Sum_probs=135.6
Q ss_pred hcCCHHHHHHHHHHHHHc-------C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 001966 730 KEEKLEQALELFRDMLEK-------G-LASTLSFNTLIEFLCISNKLQEAHQLLDAMLEE------QVNP-NHDTYTTLI 794 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~ 794 (989)
..|++++|+.++++.++. . +....++..++..+...|++++|+..++++++. +..| ...++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666666552 2 234556777888888888888888888877743 1122 345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCHH-HH
Q 001966 795 NQYCKVQNMEKAKQLFLEMQQR------NLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGK------GIEPDNF-TY 860 (989)
Q Consensus 795 ~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~-~~ 860 (989)
..|...|++++|++.+++..+. ...| ...++..++..+...|++++|...++++++. +..|+.. ++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7788888888888888877663 1012 2456777777777888888888888877762 1134333 56
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHccCC------HHHHHHHHHHHHHCCCccC
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKR--------MPISAEAYKAIIKALCKREE------YSEALRLLNEMGESGFRLG 926 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~ 926 (989)
..++.++...|++++|+++++++++.. .......|..+...+...+. +.++...++......+. .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT-V 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-H
Confidence 667777777788888888777776530 11122334444444433332 33333333322222222 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 927 FASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 927 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..++..++.+|...|++++|.+.++++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677777778788888888777777654
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=4.9e-12 Score=116.83 Aligned_cols=144 Identities=10% Similarity=-0.055 Sum_probs=122.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE 870 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 870 (989)
|+..+...|++++|+..+++... ..|+ ...+..++..|.+.|++++|+..|+++++ +.|+.. +|..++.++...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 45566778899999999998876 3444 44677899999999999999999999999 888665 888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRL-LNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
|++++|+..|+++++.+|. +..+|..++.+|.+.|++++|.+. ++++++..|+ ++.+|...+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 9999999999999998876 899999999999999999877665 5899999988 89999999999988886
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=5.6e-11 Score=116.97 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=108.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR 905 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 905 (989)
.++.++...|++++|+..|+++++ +.|+.. .+..++.++...|++++|++.|+++++.+|. +..+|..++.+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 388899999999999999999999 788655 8888999999999999999999999998866 889999999998776
Q ss_pred CC--HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHh
Q 001966 906 EE--YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVK 970 (989)
Q Consensus 906 g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 970 (989)
|+ .+++...++++.. +.|...++..++.++...|++++|+..|+++++ +.|+......+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 64 4566677776543 334455677888899999999999999999965 4787655544444
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=3.1e-11 Score=125.78 Aligned_cols=225 Identities=14% Similarity=0.036 Sum_probs=159.3
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 001966 764 ISNKLQEAHQLLDAMLE-------EQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR------NLKP-ATITYRSLL 829 (989)
Q Consensus 764 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~ 829 (989)
..|++++|+..+++.++ ...+....++..++..|...|++++|+..+++..+. +-.| ...++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666666666666553 111224567888999999999999999999998763 1123 355789999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhC------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHH
Q 001966 830 NGYNRMGNRSEVFVVFEEMLGK------GIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK-----R--MPISAEAY 895 (989)
Q Consensus 830 ~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~ 895 (989)
..+...|++++|...++++++. ...|+.. ++..++.++...|++++|++.++++++. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999872 1134433 7788899999999999999999999875 1 11145678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCc--------cCHHhHHHHHHHHHhcCChhHHHHHHHHHH---hCC-Cccc-c
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFR--------LGFASCRTVANDFLREGVMDYAAKVLECMA---SFG-WVSN-S 962 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~p~-~ 962 (989)
..++.++...|++++|+..++++++..+. .....+..++..+...+....+....+... ..+ ..|+ .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999999875211 134456666666666555444433222111 111 1233 5
Q ss_pred hhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 963 ISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 963 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..+..++..+...|++++|.+.+++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999999999999999999864
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=3e-11 Score=142.00 Aligned_cols=173 Identities=13% Similarity=0.047 Sum_probs=149.6
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 763 CISNKLQEAHQLLDAML--------EEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR 834 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 834 (989)
...|++++|++.+++.+ +.. +.+...+..++..+...|++++|++.|++..+.+ +.+...|..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 3356788889999999999999999999999842 4457789999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 835 MGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
.|++++|+..|+++++ +.|+.. .+..++.++.+.|++++ ++.|+++++.++. +..+|..++.++.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999 888655 78889999999999999 9999999998876 88999999999999999999999
Q ss_pred HHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 914 LLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
.|+++++..|. +..++..++.++...|+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999999887 78899999999988776
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.4e-10 Score=119.08 Aligned_cols=211 Identities=13% Similarity=0.056 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 001966 715 PLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLAS---TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQV-NPN-HDT 789 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~ 789 (989)
+.+...+..+...+.+.|++++|+..|+++++..|.+ ..++..++.++...|++++|+..|+++++... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4567788888999999999999999999999998866 77889999999999999999999999997532 222 466
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 001966 790 YTTLINQYCK--------VQNMEKAKQLFLEMQQRNLKPAT-ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTY 860 (989)
Q Consensus 790 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 860 (989)
+..++.++.. .|++++|+..|+++.+. .|+. .....+.. +..+.. --...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~----~~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHH----HHHHHH
Confidence 7788888988 99999999999999984 4542 22222211 111111 001236
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCccCH-
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKR----------EEYSEALRLLNEMGESGFRLGF- 927 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~- 927 (989)
..++.++.+.|++++|+..++++++..+.. ...++..++.+|... |++++|+..++++++..|+ ++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD-SPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT-CTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC-ChH
Confidence 677888999999999999999998865432 356888888888866 8899999999999998877 43
Q ss_pred --HhHHHHHHHHHhcCChhHH
Q 001966 928 --ASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 928 --~~~~~l~~~~~~~g~~~~A 946 (989)
.+...+..++...|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 3445566666555555443
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=5.4e-11 Score=117.07 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYV----------------MIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
.+..+...|++++|+..|+++++ ..|+.. .+.. ++.++.+.|++++|+..++++++.+|.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN- 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Confidence 34444555555555555555555 455433 3444 889999999999999999999998876
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCcccchhHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM--DYAAKVLECMASFGWVSNSISLADI 968 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~l 968 (989)
+..+|..++.++...|++++|+..|+++++..|+ ++.++..+|.+|...|+. +.+...++++.. ..|....++..
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~ 163 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD 163 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence 8999999999999999999999999999999998 999999999999887654 456666666642 23334466778
Q ss_pred HhhhhcCCChhhHHHHHhhh
Q 001966 969 VKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 969 ~~~~~~~g~~~~a~~~~~~~ 988 (989)
+..+...|++++|+..+++.
T Consensus 164 g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 88888899999999999874
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=2.4e-10 Score=114.17 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVN-PN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT----ITY 825 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~ 825 (989)
...+..++..+...|++++|+..|+++++.... |. ...+..++.+|.+.|++++|+..|+++.+. .|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 345566667777777777777777777754222 11 345666777777777777777777777763 2331 244
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------------
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAE------------ 893 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------ 893 (989)
..++.++...|.. .+ ..+..+...+...|++++|+..|+++++..|. +..
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHH
Confidence 5555555432100 00 00001111112234444444444444443322 111
Q ss_pred -----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 894 -----AYKAIIKALCKREEYSEALRLLNEMGESGFRLGF---ASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 894 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
....++..|.+.|++++|+..++++++..|+ ++ .++..++.+|.+.|++++|.+.++.+... .|+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~--~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN--SSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC--CSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCC
Confidence 2246788899999999999999999998876 43 67899999999999999999999988765 454
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=3.4e-09 Score=108.95 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=189.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCChhhHHHHHHHH----HHc---CCH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE--KLEQALELFRDMLEKGLASTLSFNTLIEFL----CIS---NKL 768 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 768 (989)
..++|+++++.++..+ |-+..+|+.-...+...| ++++++++++.++..+|.+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4468999999988874 667888888888888888 999999999999999998888888877776 555 789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HhH
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNME--KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN------RSE 840 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 840 (989)
++++.+++++++.. +.+..+|+.-...+.+.|+++ +++++++++.+.+ +-|..+|+.-...+...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 99999999999764 337788888888888889888 9999999999854 5567788888888888777 899
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 001966 841 VFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVME-ALKLKDLIFDKR--MPISAEAYKAIIKALCKREEYSEALRLLN 916 (989)
Q Consensus 841 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 916 (989)
+++.+++++. ..|++. .|+.+..++.+.|+..+ +..+.+++++.+ ...++.++..+++++.+.|+.++|+++++
T Consensus 205 El~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999 888655 88888888888888544 556777777654 12388899999999999999999999999
Q ss_pred HHHH-CCCccCHHhHHHHHH
Q 001966 917 EMGE-SGFRLGFASCRTVAN 935 (989)
Q Consensus 917 ~~~~-~~~~~~~~~~~~l~~ 935 (989)
.+.+ .+|- ....|...+.
T Consensus 283 ~l~~~~Dpi-r~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPI-RSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGG-GHHHHHHHHH
T ss_pred HHHhccChH-HHHHHHHHHh
Confidence 9987 4654 5666655544
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=6.3e-11 Score=139.23 Aligned_cols=188 Identities=12% Similarity=0.001 Sum_probs=157.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001966 729 CKEEKLEQALELFRDML--------EKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV 800 (989)
Q Consensus 729 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 800 (989)
...|++++|++.+++++ +..+.+...+..++..+...|++++|+..++++++.. +.+...|..++.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999999 7778888899999999999999999999999999753 23678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKL 879 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 879 (989)
|++++|++.|++..+.. +.+...|..++.++...|++++ +..|+++++ +.|+.. .+..++.++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999842 3357789999999999999999 999999999 888665 888999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHCC
Q 001966 880 KDLIFDKRMPISAEAYKAIIKALCKREEY-----SEALRLLNEMGESG 922 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~ 922 (989)
|+++++.++. +..+|..++.++...|+. ++..+..+.+....
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999988755 688999999998887774 44444444444443
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.21 E-value=1.1e-10 Score=106.85 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
+.|+.. .+..++..+.+.|++++|++.|+++++.+|. ++..|..++.+|...|++++|+..|+++++..|+ ++.+|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 778665 7888889999999999999999999998866 8999999999999999999999999999999988 899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.+|.+|...|++++|+..|+++++. .||+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999999875 56654
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=1.3e-09 Score=110.46 Aligned_cols=190 Identities=8% Similarity=0.018 Sum_probs=147.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 771 AHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLK-PATITYRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 771 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
|+..++++++.+ .++..++..++.++...|++++|++++.+.+..+-. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888888654 456666678899999999999999999998775421 346678888999999999999999999999
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 850 GKGIEP-----DNFTYYVMIDA--HCKEG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 850 ~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
+ ..| +..+...|+.+ ....| ++++|..+|+++.+.. |+...-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8 788 35566666544 44445 8999999999998764 3422222222389999999999999998776
Q ss_pred C----------CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHh
Q 001966 921 S----------GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVK 970 (989)
Q Consensus 921 ~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 970 (989)
. .|+ ++.++..++......|+ +|.++++++++. .|+......+..
T Consensus 240 ~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~d~~~ 294 (310)
T 3mv2_B 240 DYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIKHHQE 294 (310)
T ss_dssp HHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHHHHHH
Confidence 5 255 78888888888888887 899999999875 788766555443
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=3.2e-10 Score=113.18 Aligned_cols=177 Identities=10% Similarity=0.050 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----H
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----T 859 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~ 859 (989)
..+..++..+...|++++|+..|+++.+. .|+ ...+..++.++.+.|++++|+..|+++++ ..|+.. .
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 34445555666666677777766666653 222 24566666666666666666666666666 444432 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH---------
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC--------- 930 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 930 (989)
+..++.++...|.. .+ ..+..++..+...|++++|+..++++++..|+ ++.++
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHH
Confidence 44444444433311 01 11223344455688999999999999999877 54433
Q ss_pred --------HHHHHHHHhcCChhHHHHHHHHHHhCCCcccc----hhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 931 --------RTVANDFLREGVMDYAAKVLECMASFGWVSNS----ISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 931 --------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..++..|.+.|++++|+..++++++. .|++ ..+..++..+...|++++|.+.++++
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 56788999999999999999999875 5653 57899999999999999999999875
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.17 E-value=2.5e-10 Score=101.36 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=88.6
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 853 IEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 853 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
++|+.. .+...+..+.+.|++++|++.|+++++.++. +..+|..++.++.+.|++++|+..++++++..|+ ++.+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 667654 6777788888888888888888888877655 7788888888888888888888888888888777 788888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 970 (989)
.+|.+|...|++++|.+.|+++++. .|+ ...+..+.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV--DPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHHH
Confidence 8888888888888888888888764 675 445555544
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=4.6e-10 Score=116.65 Aligned_cols=166 Identities=11% Similarity=-0.029 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYV-MI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~ 864 (989)
+...+..+...+...|++++|+..|++..+.. +.+...+..++..+...|++++|...++++.. ..|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHH
Confidence 44566677777778888888888888887732 33466778888888888888888888888777 6676553332 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHHHHHHHHHhcCCh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCRTVANDFLREGVM 943 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 943 (989)
..+...++.++|++.++++++..|. +..++..++..+...|++++|+..++++++..|.. +..++..++.++...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4466677788888888888887765 78888888888888888888888888888877662 267788888888888888
Q ss_pred hHHHHHHHHHHh
Q 001966 944 DYAAKVLECMAS 955 (989)
Q Consensus 944 ~~A~~~~~~~~~ 955 (989)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=7.8e-10 Score=99.95 Aligned_cols=129 Identities=22% Similarity=0.323 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
.|..++..+...|++++|..+++++++ ..|+ ...+..++..+...|++++|.+.++++.+.++. +...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 456667777777777777777777776 4453 346666777777788888888888887776544 677777788888
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
...|++++|.+.++++++..|. ++.++..++.++...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888888877766 6777788888888888888888888877653
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=2.4e-10 Score=108.99 Aligned_cols=162 Identities=9% Similarity=-0.069 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDA-HC 868 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~ 868 (989)
+..++..+...|++++|+..|++..+.. +.+...+..++..+...|++++|+..++++++ ..|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence 3445556666777777777777666521 33455677777777777777777777777666 44522222222211 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHhHHHHHHHHHhcCChhHHH
Q 001966 869 KEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-GFASCRTVANDFLREGVMDYAA 947 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 947 (989)
..+...+|++.++++++..|. +..++..++.++...|++++|+..++++++..|.+ ++.++..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334567777777776655 67777777778888888888888888877777653 3557777788888888888887
Q ss_pred HHHHHHHh
Q 001966 948 KVLECMAS 955 (989)
Q Consensus 948 ~~~~~~~~ 955 (989)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=3.2e-10 Score=117.84 Aligned_cols=163 Identities=7% Similarity=-0.072 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
+.+...+..++..+...|++++|...|+++++ ..|+.. .+..++.++...|++++|+..++++.+..+. .......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHH
Confidence 44566788899999999999999999999999 889665 8888999999999999999999999887543 3333444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc---chhHHHHHhhhhc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN---SISLADIVKGENS 974 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 974 (989)
....+...|+.++|+..++++++..|+ ++.++..++.+|...|++++|.+.++++++. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 555577889999999999999999998 9999999999999999999999999999875 564 5678999999999
Q ss_pred CCChhhHHHHHhh
Q 001966 975 GVDLDESKDLMKQ 987 (989)
Q Consensus 975 ~g~~~~a~~~~~~ 987 (989)
.|+.++|...+++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 9999999888775
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.13 E-value=1.9e-10 Score=109.76 Aligned_cols=158 Identities=11% Similarity=-0.012 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA- 901 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 901 (989)
.+..++..+...|++++|...|+++++ ..|+.. .+..++.++...|++++|+..++++++..+ ++..+..++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 456677888999999999999999988 788665 788899999999999999999999987654 55555444433
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc---chhHHHHHhhhhcCCCh
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN---SISLADIVKGENSGVDL 978 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~ 978 (989)
+...++..+|+..++++++..|+ ++.++..++.++...|++++|...++++++. .|+ ...+..++..+...|+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence 22333445689999999999988 8999999999999999999999999999876 554 45889999999999999
Q ss_pred hhHHHHHhhh
Q 001966 979 DESKDLMKQT 988 (989)
Q Consensus 979 ~~a~~~~~~~ 988 (989)
++|...+++.
T Consensus 161 ~~A~~~y~~a 170 (176)
T 2r5s_A 161 NAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9999988763
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=7.6e-10 Score=116.49 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=136.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCK-EEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQL 774 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 774 (989)
.|++++|.+++++..+.. +. .+.. .+++++|...|.++ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 456777777777766531 11 0222 46777777776655 3456677888888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHhHHHHH
Q 001966 775 LDAMLEE----QVNP-NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRN--L-KPA--TITYRSLLNGYNRMGNRSEVFVV 844 (989)
Q Consensus 775 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~ 844 (989)
+.+..+. +-.+ -..+|..++..|...|++++|+..|++..+.. . .+. ..++..++..|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8777642 1000 12466777777777788888888887776531 0 111 2456677777777 788888888
Q ss_pred HHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHccCCHHHHH
Q 001966 845 FEEMLGKGIEPD-------NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI-S----AEAYKAIIKALCKREEYSEAL 912 (989)
Q Consensus 845 ~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~ 912 (989)
|+++++ +.|+ ..++..++.++...|++++|++.++++++..+.. + ...+..++.++...|++++|+
T Consensus 138 ~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 138 YQQAAA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 877776 3321 2356667777777788888888777777642111 1 235566666777777888888
Q ss_pred HHHHHHHHCCCccC----HHhHHHHHHHHHhcCChhHHHH
Q 001966 913 RLLNEMGESGFRLG----FASCRTVANDFLREGVMDYAAK 948 (989)
Q Consensus 913 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 948 (989)
..+++++ ..|... ......++..+ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8887777 655411 11233444444 4566655544
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=3.8e-09 Score=104.03 Aligned_cols=176 Identities=12% Similarity=0.011 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHhHHHHHH
Q 001966 770 EAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG----NRSEVFVVF 845 (989)
Q Consensus 770 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 845 (989)
+|...|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|+..|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666542 56666667777777777777777777777643 45566667776666 5 777888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 001966 846 EEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEALKLKDLIFDKRMP-ISAEAYKAIIKALCK----REEYSEALRLLN 916 (989)
Q Consensus 846 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 916 (989)
++..+.| +..++..|+..|.. .+++++|+++++++.+.++. .++.++..|+.+|.. .+++++|+..++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776633 44566777777766 67788888888888776531 126777778888777 778888888888
Q ss_pred HHHHCCCccCHHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 001966 917 EMGESGFRLGFASCRTVANDFLRE-G-----VMDYAAKVLECMASFG 957 (989)
Q Consensus 917 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 957 (989)
++.+.+ . ++.++..|+.+|... | ++++|..+++++.+.|
T Consensus 154 ~A~~~~-~-~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS-R-TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS-C-TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC-C-CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 887762 2 556777888877654 2 7788888888877654
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=8.1e-10 Score=98.07 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=99.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 818 LKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 818 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
+.|+ ...+...+..|.+.|++++|+..|+++++ +.|+.. .|..++.++.+.|++++|++.++++++.++. +..+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 4455 34778888999999999999999999998 778654 7888899999999999999999999988766 88899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
..++.++...|++++|++.|+++++..|+ +..++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 99999999999999999999999999988 888887777653
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=1.3e-09 Score=126.17 Aligned_cols=163 Identities=7% Similarity=-0.056 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 001966 766 NKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVF 845 (989)
Q Consensus 766 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 845 (989)
|++++|+..+++.++.. +.+...+..++..+...|++++|++.|++..+.. +.+..++..++..|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666666542 1245566666666666666777776666666632 233556666666666666666666666
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 001966 846 EEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR---EEYSEALRLLNEMGES 921 (989)
Q Consensus 846 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 921 (989)
+++++ +.|+.. .+..++.++...|++++|++.++++++..+. +..++..++.++... |++++|...++++++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66666 555433 5666666666666666666666666665544 566666666666666 6666666666666666
Q ss_pred CCccCHHhHHHHH
Q 001966 922 GFRLGFASCRTVA 934 (989)
Q Consensus 922 ~~~~~~~~~~~l~ 934 (989)
+|. +...+..++
T Consensus 158 ~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVG-AVEPFAFLS 169 (568)
T ss_dssp TCC-CSCHHHHTT
T ss_pred CCc-ccChHHHhC
Confidence 655 444444444
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=2.1e-08 Score=98.67 Aligned_cols=175 Identities=11% Similarity=0.005 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 001966 736 QALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ----NMEKAKQLFL 811 (989)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 811 (989)
+|++.|++..+.+ +..++..++..|...+++++|+..|++..+.| +...+..+...|.. + ++++|++.|+
T Consensus 4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4566676766653 56677777777777888888888888877653 55667777777776 5 7888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHH
Q 001966 812 EMQQRNLKPATITYRSLLNGYNR----MGNRSEVFVVFEEMLGKGIEPD---NFTYYVMIDAHCK----EGNVMEALKLK 880 (989)
Q Consensus 812 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~ 880 (989)
+..+.| +...+..|+..|.. .+++++|+.+|++..+ ..|. ...+..|+.+|.. .+++++|++.|
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 887643 56677778887776 7888999999988887 4453 4577888888888 78899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCCC
Q 001966 881 DLIFDKRMPISAEAYKAIIKALCKR-E-----EYSEALRLLNEMGESGF 923 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 923 (989)
+++.+.+ .+..++..|+.+|... | ++++|+..++++.+.+.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998862 2556788888888653 3 89999999999888873
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=3.8e-09 Score=95.36 Aligned_cols=132 Identities=22% Similarity=0.329 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAH 867 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 867 (989)
.|..++..+...|++++|+.+++++.+.+ +.+...+..++..+...|++++|...++++++ ..|+ ...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 45566667777777777777777776642 33456677777777778888888888888777 4454 34666777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
...|++++|++.++++.+..+. +...+..++.++...|++++|...++++++..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888888776544 6777888888888888888888888888776543
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.06 E-value=3.1e-08 Score=102.59 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 001966 732 EKLEQALELFRDMLEKGLASTLSFNTLIEFLCISN-KLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKV-Q-NMEKAKQ 808 (989)
Q Consensus 732 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 808 (989)
+..++|+++++.++..+|.+..+|+.....+...| .+++++.+++.++.... .+..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34456777777777777777777777777777777 47777777777776532 2556666666666555 5 7778888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh--------HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC-------
Q 001966 809 LFLEMQQRNLKPATITYRSLLNGYNRMGNRS--------EVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN------- 872 (989)
Q Consensus 809 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~------- 872 (989)
+++++.+.. +-|..+|+.-...+.+.|.++ ++++.++++++ .+|.+. +|+....++.+.+.
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHH
Confidence 888877643 445667777666666666666 88888888888 677444 78777777777765
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHHCC-----CccCH
Q 001966 873 VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY--------------------SEALRLLNEMGESG-----FRLGF 927 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~ 927 (989)
++++++++++++...+. |..+|..+...+.+.|+. .+......++.... ..+++
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888888888766 888888877777776653 33444444443332 01368
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 928 ASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 928 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.++..|+++|...|+.++|.++++.+.+ .+.|-
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpi 335 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChH
Confidence 8889999999999999999999998764 35664
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=2.7e-09 Score=112.30 Aligned_cols=222 Identities=13% Similarity=0.060 Sum_probs=135.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001966 661 ICDVDKAFQLYEEMCEKGVEPNTLTYNVLIDGFCK-AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALE 739 (989)
Q Consensus 661 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 739 (989)
.|++++|.+++++..+... . .+.+ .+++++|...|.++ +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667777777777665411 1 0222 46777777776654 345667788888888
Q ss_pred HHHHHHHcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 001966 740 LFRDMLEKGL--AS----TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQ--V-NPN--HDTYTTLINQYCKVQNMEKAKQ 808 (989)
Q Consensus 740 ~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~~ 808 (989)
.|.++.+..+ .+ ..++..++..|...|++++|+..+++.++.. . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8777766432 11 3356677777777888888888888776531 1 111 2456667777777 88888888
Q ss_pred HHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC------H-HHHHHHHHHHHhcCCHHHH
Q 001966 809 LFLEMQQRNLKP-A----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD------N-FTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 809 ~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~-~~~~~l~~~~~~~g~~~~A 876 (989)
.|++..+..... + ..++..++..|...|++++|+..|+++++ +.|+ . ..+..++.++...|++++|
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS--MYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 888777631000 1 34677777778888888888888888776 3221 1 1445556666677888888
Q ss_pred HHHHHHHHhCCCCC--CH--HHHHHHHHHHHccCCHHHHHH
Q 001966 877 LKLKDLIFDKRMPI--SA--EAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 877 ~~~~~~~~~~~~~~--~~--~~~~~l~~~~~~~g~~~~A~~ 913 (989)
+..+++++ ..+.. .. .....++..+ ..|+.+++..
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88888877 54321 11 1233344433 4566555554
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.02 E-value=9.4e-10 Score=101.00 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=94.7
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 843 VVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..|+++++ +.|+.. .+..++..+...|++++|+..|+++++.++. +...|..++.++...|++++|+..++++++.
T Consensus 8 ~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34666666 677655 6777888888999999999999999887765 8888999999999999999999999999988
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 922 GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 922 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.|+ ++.++..+|.+|...|++++|.+.++++++. .|+
T Consensus 85 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 121 (148)
T 2vgx_A 85 DIX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL--IAN 121 (148)
T ss_dssp STT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 887 8888999999999999999999999988764 454
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=2.1e-09 Score=124.40 Aligned_cols=163 Identities=10% Similarity=-0.049 Sum_probs=129.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALK 878 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 878 (989)
.|++++|++.|++..+.. +.+...+..++..+...|++++|...++++++ ..|+.. .+..++.++...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999998742 34577899999999999999999999999999 788654 88889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 001966 879 LKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE---GVMDYAAKVLECMAS 955 (989)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 955 (989)
.++++++..+. +..++..++.++.+.|++++|++.++++++..|+ ++.++..++.++... |++++|.+.++++++
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999998766 8899999999999999999999999999999988 899999999999999 999999999999987
Q ss_pred CCCccc-chhHHHHH
Q 001966 956 FGWVSN-SISLADIV 969 (989)
Q Consensus 956 ~~~~p~-~~~~~~l~ 969 (989)
. .|+ ...+..++
T Consensus 157 ~--~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 Q--GVGAVEPFAFLS 169 (568)
T ss_dssp H--TCCCSCHHHHTT
T ss_pred c--CCcccChHHHhC
Confidence 5 565 44455444
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=2.1e-07 Score=103.90 Aligned_cols=379 Identities=9% Similarity=0.019 Sum_probs=218.4
Q ss_pred hcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHH
Q 001966 520 KAK-RMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCKEGN-IAEA 597 (989)
Q Consensus 520 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 597 (989)
+.| +++.|+.+|+.++.. -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887764 222 8899999999998875 5688888888877776663 4556
Q ss_pred HHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 598 ISKFRCMLAR-GI-LPEVQTYSVLINGLS----KKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQLY 671 (989)
Q Consensus 598 ~~~~~~~~~~-~~-~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 671 (989)
..+|+..+.. |. +++...|...+..+. .+++.+.+.++|+.++......-...|..... +.+......+..+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 6777777654 32 336677877777554 24567788888888887421111112221111 11111112222222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHH
Q 001966 672 EEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE--K-----LEQALELFRDM 744 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~ 744 (989)
.+.. +.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1111 122233333333322100013345555544432211 0 34566788888
Q ss_pred HHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C----
Q 001966 745 LEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR---N---- 817 (989)
Q Consensus 745 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---- 817 (989)
+...|.....|...+..+...|+.++|..++++.+.. +.+...|...+ ...+.++. ++.+.+. .
T Consensus 206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~----~~~e~~~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG----LVMDEEAV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH----HHTTCTHH---HHHHHHHTC------
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH----hhcchhHH---HHHHHHHHHhhccch
Confidence 8777766777777777777888888888888888866 22333332221 11111111 2222110 0
Q ss_pred --C---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCC
Q 001966 818 --L---KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG-NVMEALKLKDLIFDKRMPIS 891 (989)
Q Consensus 818 --~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~ 891 (989)
. ......|...+..+.+.+..+.|..+|+++ .. -.+....|...+..-...+ +.+.|.++|+.+++.-+. +
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~ 353 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-S 353 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-C
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-C
Confidence 0 111245777777777778889999999888 41 1123334443333333333 688999999998876433 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+..|...++...+.|+.+.|..+|+++ .+ +...|...+..-...|+.+.+.++++++.+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~----~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRL----EK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHS----CC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777788889999999999886 22 567777777777788998888888887764
No 121
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=9.8e-08 Score=98.47 Aligned_cols=219 Identities=11% Similarity=-0.010 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CH
Q 001966 736 QALELFRDMLEKGLASTLSFNTLIEFLCISNK----------LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQ--NM 803 (989)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~ 803 (989)
+|+.+++.++..+|.+..+|+.-...+...+. +++++.+++.++... +.+..+|+.-...+...| .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 45555555555555555555544444433332 466677777766543 225566666666666666 36
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-----------
Q 001966 804 EKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN-RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE----------- 870 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----------- 870 (989)
++++.+++++.+.. +-|..+|+.-..++...|. ++++++.+.++++ .+|.+. +|+....++...
T Consensus 127 ~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 127 ARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 77777777777643 4456677777766667776 5777777777777 666444 666665555443
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCccCHHhHHHHHHH
Q 001966 871 ---GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR-----------EEYSEALRLLNEMGESGFRLGFASCRTVAND 936 (989)
Q Consensus 871 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 936 (989)
+.++++++++++++...|. |..+|+.+...+.+. +.++++++.++++++..|+ +...+..++..
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~ 281 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILL 281 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHH
Confidence 4578888888888887766 888887776666665 4688999999999998877 65554444432
Q ss_pred H---HhcCChhHHHHHHHHHHhCCCcccc
Q 001966 937 F---LREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 937 ~---~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
. ...|..+++..++.++++ ++|..
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~--~Dp~r 308 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA--VDPMR 308 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH--HCGGG
T ss_pred HHhhcccccHHHHHHHHHHHHH--hCcch
Confidence 2 246777888889988876 47754
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=9.9e-09 Score=101.43 Aligned_cols=129 Identities=13% Similarity=0.006 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAH 867 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~ 867 (989)
.+..++..+...|++++|++.|++. +.|+..++..++.++...|++++|+..++++++ +.|+.. .+..++.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHH
Confidence 3445566666777777777776655 245666677777777777777777777777766 455433 566666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISA----------------EAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
...|++++|++.++++++..+. +. .++..++.++.+.|++++|...++++++..|.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777777665433 22 56666666666677777777777766666554
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=1.3e-06 Score=97.59 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001966 596 EAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEK 642 (989)
Q Consensus 596 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 642 (989)
.+..+|++++.. .+.+...|...+..+.+.|+.++|..++.+.+..
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 344556665553 2334556666666666666666666666666665
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.93 E-value=3.1e-07 Score=95.16 Aligned_cols=221 Identities=10% Similarity=0.057 Sum_probs=166.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc-C-CHHHHH
Q 001966 696 AGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEE-KLEQALELFRDMLEKGLASTLSFNTLIEFLCIS-N-KLQEAH 772 (989)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~ 772 (989)
.+..++|+++++.++..+ |-+..+|+.-...+...| .+++++++++.++..+|.+..+|+.....+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567888888888774 567778888777777777 588999999999988888888888888888777 7 888899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNME--------KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGN------- 837 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 837 (989)
++++++++... .+..+|+.-...+.+.|.++ +++++++++.+.. +-|..+|+.....+.+.++
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 99998887542 36777777666666666666 8999999998853 5567789888888888776
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC-----CCCC
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNV--------------------MEALKLKDLIFDKR-----MPIS 891 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~ 891 (989)
++++++.+++++. +.|++. .|..+...+.+.|+. .+..++..+++... ..++
T Consensus 224 ~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 224 LQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 7899999999998 888665 777777777766653 23333333333322 1357
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
..++..++++|...|+.++|.++++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 889999999999999999999999998755
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.93 E-value=3.7e-09 Score=96.49 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=91.7
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 844 VFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 844 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
.|+++++ +.|+.. .+..++..+.+.|++++|++.|+++++.++. +...|..++.++...|++++|+..++++++..
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444 667554 6777788888999999999999999888765 88889999999999999999999999999988
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 923 FRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 923 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
|. ++.++..++.+|...|++++|.+.++++++. .|+
T Consensus 83 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 118 (142)
T 2xcb_A 83 IN-EPRFPFHAAECHLQLGDLDGAESGFYSARAL--AAA 118 (142)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHT
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 87 8888999999999999999999999988764 564
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.4e-08 Score=101.45 Aligned_cols=131 Identities=14% Similarity=-0.008 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--AEAYKAIIKALC 903 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 903 (989)
..++..+...|++++|.+.|+.+.. ..|+......++..+.+.|+|++|+..++...... .|. ..++..++.++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 3445556666666666666666655 44544445555566666666666666666554321 111 235666666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 904 KREEYSEALRLLNEMGESGFRL--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..|++++|+..|+++.....+| .+.+.+.++.++.+.|+.++|...|+++.+. .|+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 6666666666666665332112 2345666666666666666666666666553 455
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=3.1e-08 Score=99.02 Aligned_cols=201 Identities=9% Similarity=-0.085 Sum_probs=152.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHH------------CCCC------
Q 001966 730 KEEKLEQALELFRDMLEKGLASTLSFNTL-------IEFLCISNKLQEAHQLLDAMLE------------EQVN------ 784 (989)
Q Consensus 730 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~------------~~~~------ 784 (989)
..++...|.+.|.++.+..|.....|..+ ...+...++..+++..+.+.+. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57888999999999999888888888877 5667766666677666666554 1110
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHH
Q 001966 785 --PNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD--NFTY 860 (989)
Q Consensus 785 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~ 860 (989)
.-...+..++..+...|++++|.++|+.+... .|+......++..+.+.|++++|+..|+...... .|. ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 00234556777888999999999999988773 4655477777888999999999999999776521 221 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
..++.++...|++++|+..|+++......| ...++...+.++.+.|+.++|...|+++....|. ..++..|.+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 888999999999999999999998543214 4568889999999999999999999999998865 555544433
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.91 E-value=4.8e-09 Score=95.88 Aligned_cols=104 Identities=10% Similarity=-0.063 Sum_probs=92.4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001966 818 LKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAY 895 (989)
Q Consensus 818 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 895 (989)
+.|+ ...+..++..+...|++++|+..|+++++ +.|++. .|..++.++...|++++|++.|+++++.+|. ++.+|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 4454 45788899999999999999999999999 888655 7888999999999999999999999998876 88899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..++.+|.+.|++++|+..|+++++..|+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998865
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=1.9e-08 Score=94.58 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
..+..++..+...|++++|...|+++++ ..|+ ...+..++.++...|++++|++.++++++..+. +..+|..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4567778888888999999999998888 6664 447788888888999999999999999887655 78889999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHH--HHHHHHhcCChhHHHHHHHHHHh
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRT--VANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+...|++++|+..++++++..|. +..++.. ++..+...|++++|.+.+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999988877 6666644 44458888999999998887654
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=5.3e-08 Score=96.13 Aligned_cols=126 Identities=15% Similarity=0.074 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001966 755 FNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNR 834 (989)
Q Consensus 755 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 834 (989)
+..++..+...|++++|+..+++.+ .|+...+..++..|...|++++|++.|++..+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344445555555555555555442 3344455555555555555555555555554421 2234445555555555
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001966 835 MGNRSEVFVVFEEMLGKGIEPDN-----------------FTYYVMIDAHCKEGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~~g~~p~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 887 (989)
.|++++|+..|+++++ ..|+. ..+..++.++...|++++|.+.++++++..
T Consensus 84 ~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHH--hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 5555555555555555 22211 244445555555555555555555555443
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=2e-08 Score=90.25 Aligned_cols=95 Identities=14% Similarity=-0.007 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..++.+|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 4444444455555555555555555444332 4444555555555555555555555555554444 4445555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 001966 939 REGVMDYAAKVLECMAS 955 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~ 955 (989)
..|++++|.+.++++.+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555443
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=1.4e-08 Score=108.02 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=122.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----------------HHHHH
Q 001966 800 VQNMEKAKQLFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----------------FTYYV 862 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~~ 862 (989)
.+++++|++.++...+ ..| +...+..++..+.+.|++++|+..|+++++ +.|+. ..+..
T Consensus 126 L~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHH
Confidence 3445555555544433 223 355778888888888888888888888888 66654 58888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++.++.+.|++++|+..++++++..+. +..+|..++.+|...|++++|+..|+++++..|. +..++..++.++...|+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998766 8899999999999999999999999999999988 88999999999999999
Q ss_pred hhHH-HHHHHHHHh
Q 001966 943 MDYA-AKVLECMAS 955 (989)
Q Consensus 943 ~~~A-~~~~~~~~~ 955 (989)
+++| ...+++|.+
T Consensus 280 ~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 280 QLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 9988 556676653
No 133
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.89 E-value=8.3e-07 Score=91.56 Aligned_cols=233 Identities=11% Similarity=0.021 Sum_probs=159.5
Q ss_pred hcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 001966 695 KAGDLT-EPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEK----------LEQALELFRDMLEKGLASTLSFNTLIEFLC 763 (989)
Q Consensus 695 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 763 (989)
+.|.++ +|+.+++.++..+ |-+..+|+.-...+...+. +++++.+++.++..+|.+..+|..-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 344443 5666666666653 4455555544333333222 567888888888888888888888777777
Q ss_pred HcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 001966 764 ISNK--LQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQN-MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRM----- 835 (989)
Q Consensus 764 ~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 835 (989)
..|+ +++++.+++++++... .+..+|+.-...+...|. ++++++.++++.+.. +-|..+|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 7774 7888888888887542 366777777777777777 588888888888753 45566777766666554
Q ss_pred ---------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 836 ---------GNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKE-----------GNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 836 ---------g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
+.++++++.+++++. +.|++. +|+.+-..+.+. +.++++++.++++++..|. +...
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchH
Confidence 457899999999998 888666 676665555554 4588999999999988765 5444
Q ss_pred HHHHHHH---HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 895 YKAIIKA---LCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 895 ~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
+..++.. ....|..+++...+.++++.+|. ...-|..+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~ 316 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHH
Confidence 4443322 23468889999999999998866 444444443
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=1.2e-09 Score=116.22 Aligned_cols=150 Identities=11% Similarity=-0.035 Sum_probs=128.7
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS--------------AEAYKAI 898 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l 898 (989)
..+++++|...+++..+ ..|+.. .+..++..+.+.|++++|+..|+++++..+... ..+|..+
T Consensus 125 ~L~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 34567777777777666 566544 788899999999999999999999999876532 6899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCC
Q 001966 899 IKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVD 977 (989)
Q Consensus 899 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 977 (989)
+.++.+.|++++|+..++++++..|. ++.++..++.+|...|++++|+..|+++++. .|+ ...+..++..+...|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 8999999999999999999999999999875 775 6788999999999999
Q ss_pred hhhHH-HHHhhh
Q 001966 978 LDESK-DLMKQT 988 (989)
Q Consensus 978 ~~~a~-~~~~~~ 988 (989)
+++|+ .++++|
T Consensus 280 ~~~a~~~~~~~~ 291 (336)
T 1p5q_A 280 QLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 99984 355543
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=8.9e-09 Score=98.23 Aligned_cols=120 Identities=10% Similarity=0.109 Sum_probs=79.7
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCH--
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEY-- 908 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 908 (989)
...|++++|...+++.++ ..|+. ..+..++.++...|++++|+..++++++..+. +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 345667777777777766 55543 36666667777777777777777777766544 66677777777 6667776
Q ss_pred HHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 909 SEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
++|+..++++++..|. ++.++..++.+|...|++++|...++++++.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777777666 6677777777777777777777777777654
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=7.2e-08 Score=100.58 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=117.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCH----HHHHH
Q 001966 793 LINQYCKVQNMEKAKQLFLEMQQRN-LKPAT----ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGI-EPDN----FTYYV 862 (989)
Q Consensus 793 l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~~~~ 862 (989)
.+..+...|++++|..++++..+.. ..|+. ..+..++..+...|++++|+..++++++... .++. .++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677788888888888877632 11221 1233566777777888999998888887211 1221 25778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHhHH
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDK------RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFASCR 931 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~ 931 (989)
++.+|...|++++|+.+++++++. .......++..++.+|.+.|++++|+..++++++..++. -+.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999988841 111123478889999999999999999999988654331 167889
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 001966 932 TVANDFLREGV-MDYAAKVLECMAS 955 (989)
Q Consensus 932 ~l~~~~~~~g~-~~~A~~~~~~~~~ 955 (989)
.+|.+|.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999998875
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.87 E-value=1.9e-08 Score=90.08 Aligned_cols=117 Identities=14% Similarity=0.027 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA 901 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 901 (989)
..+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +...+..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 3455555555555666666666666555 3443 234555555555566666666666665554433 45555556666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCCh
Q 001966 902 LCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVM 943 (989)
Q Consensus 902 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 943 (989)
+...|++++|...++++++..|. ++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66666666666666666555554 555555555555555543
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=2.1e-07 Score=97.06 Aligned_cols=161 Identities=8% Similarity=-0.024 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-------FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP---IS-- 891 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~-- 891 (989)
.+...+..+...|++++|.+.+++.++ ..|.. ..+..++..+...|++++|+..++++++.... +.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELK--KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc--cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344455556666666666666666665 22211 11233445555666667777766666643211 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH---HCCCc-c--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc----
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMG---ESGFR-L--GFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN---- 961 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---- 961 (989)
..++..++..|...|++++|+..+++++ +..+. + ...++..+|.+|...|++++|...++++++.....+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3456666666666777777777776665 22222 0 124566667777777777777766666654211100
Q ss_pred -chhHHHHHhhhhcCCChhhH-HHHHh
Q 001966 962 -SISLADIVKGENSGVDLDES-KDLMK 986 (989)
Q Consensus 962 -~~~~~~l~~~~~~~g~~~~a-~~~~~ 986 (989)
...+..++..+...|++++| ...++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34556666666666666666 55444
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=1.6e-07 Score=97.90 Aligned_cols=204 Identities=8% Similarity=0.011 Sum_probs=143.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 001966 775 LDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATI---TYRSLLNGYNRMGNRSEVFVVFEEMLGK 851 (989)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 851 (989)
+.++......|+..+...+...+.-. ++ .+.......+.. .+...+..+...|++++|..++++.++.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--II-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--TH-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--HH-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34444333467777777776665322 11 112211122222 3344567788999999999999999982
Q ss_pred -CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 852 -GIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS----AEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 852 -g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
...|+.. .+..++..+...|++++|+..++++++.... ++ ..++..++.+|...|++++|+..++++++.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1223322 2224677788889999999999999985322 22 346899999999999999999999999842
Q ss_pred ------CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----Cccc-chhHHHHHhhhhcCCC-hhhHHHHHhh
Q 001966 922 ------GFRLGFASCRTVANDFLREGVMDYAAKVLECMASFG----WVSN-SISLADIVKGENSGVD-LDESKDLMKQ 987 (989)
Q Consensus 922 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~-~~~a~~~~~~ 987 (989)
.......++..+|.+|...|++++|...++++++.. ..+. ...+..++..+...|+ +++|.+.+++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 111135578999999999999999999999987531 1222 4678999999999995 6999988875
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.85 E-value=2.2e-08 Score=88.96 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC------HHhHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG------FASCRT 932 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 932 (989)
++..++..+.+.|++++|++.|+++++.+|. +..+|..++.+|.+.|++++|+..++++++..|+.. ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 5666777888888888888888888877655 777888888888888888888888888877654411 246777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHH
Q 001966 933 VANDFLREGVMDYAAKVLECMASFGWVSNSISLAD 967 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 967 (989)
+|.++...|++++|++.|+++++. .||++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 888888888888888888887763 566554433
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=4.5e-08 Score=87.92 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
+.+...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|++.++++++..+. +..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 33467899999999999999999999999998 6775 458888999999999999999999999998765 8899999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCC
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 942 (989)
++.++...|++++|+..++++++..|. +..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 999999999999999999999999877 78889999999887764
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.84 E-value=6.1e-09 Score=95.51 Aligned_cols=111 Identities=12% Similarity=-0.011 Sum_probs=93.6
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 809 LFLEMQQRNLKP-ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 809 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.|+++.. +.| +...+..++..+...|++++|+..|+++++ ..|++. .|..++.++...|++++|++.|+++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455554 344 355778888999999999999999999998 778554 7888889999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 887 RMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 887 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++. ++.++..++.++...|++++|+..|+++++..|+
T Consensus 85 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 85 DIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp STT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 766 7889999999999999999999999999988765
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.82 E-value=5.5e-08 Score=86.11 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
.+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|+..++++++..+. +...+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 444445555555555555555555554 3332 224444455555555555555555555544332 444555555555
Q ss_pred HccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 903 CKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
...|++++|...++++++..|. ++.++..++.++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 5555555555555555555444 44444444444433
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=4e-08 Score=87.36 Aligned_cols=96 Identities=15% Similarity=0.027 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+.+.|++++|+..|+++++..+. +..+|..++.++.+.|++++|+..++++++..|. ++.++..+|.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 5666677777788888888888888777655 7777888888888888888888888888887776 7777888888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 001966 939 REGVMDYAAKVLECMASF 956 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~ 956 (989)
..|++++|...++++++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888877654
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=4e-08 Score=92.37 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..+|.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 5677888999999999999999999988765 8999999999999999999999999999999887 8999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccc-chhH--HHHHhhhhcCCChhhHHHHHhhh
Q 001966 939 REGVMDYAAKVLECMASFGWVSN-SISL--ADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~--~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
..|++++|.+.++++++. .|+ ...+ ...+..+...|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999999875 564 4555 44444477889999999888753
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=2.3e-07 Score=96.66 Aligned_cols=165 Identities=10% Similarity=0.025 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCC--HHHH
Q 001966 791 TTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKG---IEPD--NFTY 860 (989)
Q Consensus 791 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~--~~~~ 860 (989)
...+..+...|++++|++.+++..+...... ...+..++..+...|++++|+..++++++.. ..+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3345556666777777777766665321111 1223445666777888888888888887621 1122 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-----CHHh
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFD---KRMP-I--SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL-----GFAS 929 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ 929 (989)
..++..|...|++++|+.+++++++ ..+. + ...++..++.+|...|++++|+..++++++...+. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7788888899999999999988873 2211 1 12578889999999999999999999987654221 1667
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHh
Q 001966 930 CRTVANDFLREGVMDYA-AKVLECMAS 955 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 955 (989)
+..+|.+|.+.|++++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88999999999999999 777887764
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=4.2e-08 Score=87.25 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|+..|+++++ +.|+. ..+..++.++.+.|++++|+..++++++.++. +..+|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45677788888888999999999999888 67754 47888888899999999999999999888765 7888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCC------CccCHHhHHHHHHHH
Q 001966 901 ALCKREEYSEALRLLNEMGESG------FRLGFASCRTVANDF 937 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~ 937 (989)
++...|++++|+..++++++.. |. +..++..+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHH
Confidence 9999999999999999988887 44 555555555443
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=2.5e-08 Score=103.08 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001966 752 TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNG 831 (989)
Q Consensus 752 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 831 (989)
...+..++..+...|++++|+..|++.++.. +.+...|..++.+|.+.|++++|+..+++..+.. +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666666542 1255666666777777777777777777766632 3345566777777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE 910 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 910 (989)
+...|++++|...|+++++ +.|+.. .+...+....+ ..++...... .......+..+...++..+ .|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWNSI-EERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHHHH-HHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHHHH-HHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 7777777777777777776 444331 11111111111 1111111111 1122333555555554433 678888
Q ss_pred HHHHHHHHHHCCCccCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 001966 911 ALRLLNEMGESGFRLGFASCRTVANDFLRE-GVMDYAAKVLECMAS 955 (989)
Q Consensus 911 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 955 (989)
|++.++++++..|. +......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888887777665 555556666666665 667788888877654
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=1.2e-08 Score=105.51 Aligned_cols=191 Identities=8% Similarity=-0.003 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMI 864 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 864 (989)
+...+..++..+...|++++|+..|++..+.. +.+...|..++.++...|++++|+..++++++ +.|+.. .+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45678888899999999999999999998842 33678899999999999999999999999998 788655 888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChh
Q 001966 865 DAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMD 944 (989)
Q Consensus 865 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 944 (989)
.++...|++++|++.++++++.++. +...+...+....+ ..++...........+. ++.+...++..+ .|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRWNSIEERRIHQ-ESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCC-CCHHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHHHHHHHHHHhh-hHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999876432 11111111111111 12222222222233333 666666666654 69999
Q ss_pred HHHHHHHHHHhCCCcccc-hhHHHHHhhhhcC-CChhhHHHHHhhh
Q 001966 945 YAAKVLECMASFGWVSNS-ISLADIVKGENSG-VDLDESKDLMKQT 988 (989)
Q Consensus 945 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~ 988 (989)
+|.+.++++++ ..|+. .....+...+... +.+++|.++|++.
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998865 36753 3445555545443 6788899888754
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=6.5e-09 Score=101.29 Aligned_cols=154 Identities=9% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----------------HH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-----------------FT 859 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----------------~~ 859 (989)
....|++++|.+.++...+. .......+..++..+...|++++|+..|+++++ +.|+. ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp --------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHHH
Confidence 34455666666555432221 111234567777778888888888888888887 44432 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++.++...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. +..++..++.++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 777888888889999999999998887655 7888888999999999999999999998888877 78888888888888
Q ss_pred cCChhHHH-HHHHHHHh
Q 001966 940 EGVMDYAA-KVLECMAS 955 (989)
Q Consensus 940 ~g~~~~A~-~~~~~~~~ 955 (989)
.|+.+++. ..+..+..
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88887776 55555543
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=6.4e-08 Score=86.50 Aligned_cols=117 Identities=9% Similarity=-0.096 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
..+..++..+...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 36777889999999999999999999987655 7899999999999999999999999999999887 899999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCCh
Q 001966 938 LREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDL 978 (989)
Q Consensus 938 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 978 (989)
...|++++|...++++.+. .| +...+..++..+...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999875 56 467788888888777664
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=4.1e-08 Score=86.27 Aligned_cols=99 Identities=16% Similarity=0.020 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+.+.|++++|+..++++++..+. +..+|..++.++...|++++|+..++++++..|+ ++.++..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4566778888899999999999999988766 8889999999999999999999999999998888 8888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccc
Q 001966 939 REGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..|++++|...++++++. .|+
T Consensus 97 ~~g~~~~A~~~~~~al~~--~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS--QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHh--CcC
Confidence 999999999999988753 564
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=8e-08 Score=93.91 Aligned_cols=156 Identities=10% Similarity=-0.098 Sum_probs=98.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG----KGIEPDN-FTYYVMIDAHCKEGNV 873 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~g~~ 873 (989)
..|++++|.+.++.+.. .......++..++..+...|++++|...++++++ .+..|.. ..+..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45667777764444432 1112345666777777777777777777777665 1122222 2566677777778888
Q ss_pred HHHHHHHHHHHhC---CC-C--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc---cC--HHhHHHHHHHHHhcCC
Q 001966 874 MEALKLKDLIFDK---RM-P--ISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR---LG--FASCRTVANDFLREGV 942 (989)
Q Consensus 874 ~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~ 942 (989)
++|++.++++++. .. . ....++..++.++...|++++|...++++++.... +. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888887777654 11 1 12345677788888888888888888877643211 11 3345778888888888
Q ss_pred hhHHHHHHHHHHh
Q 001966 943 MDYAAKVLECMAS 955 (989)
Q Consensus 943 ~~~A~~~~~~~~~ 955 (989)
+++|.+.++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.76 E-value=7e-09 Score=101.07 Aligned_cols=148 Identities=11% Similarity=0.017 Sum_probs=112.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---------------
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISA--------------- 892 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------- 892 (989)
+......|.++++.+.++...+ ..++ ...+..++..+...|++++|++.|+++++..+. +.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -----------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHH
Confidence 3344556677777776664333 2222 236777889999999999999999999987544 33
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHHh
Q 001966 893 -EAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIVK 970 (989)
Q Consensus 893 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 970 (989)
.+|..++.++.+.|++++|+..++++++..|. ++.++..+|.+|...|++++|.+.++++++. .|+ ...+..+..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 78999999999999999999999999999887 8999999999999999999999999999875 675 677888888
Q ss_pred hhhcCCChhhHH
Q 001966 971 GENSGVDLDESK 982 (989)
Q Consensus 971 ~~~~~g~~~~a~ 982 (989)
.+...|+..++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 888777777766
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=3.2e-08 Score=94.35 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=99.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCCH--
Q 001966 798 CKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDA-HCKEGNV-- 873 (989)
Q Consensus 798 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~-~~~~g~~-- 873 (989)
...|++++|+..+++..+.. +.+...|..++..|...|++++|...|+++++ +.|+.. .+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888998888887743 44577888899999999999999999999988 667544 67777887 7788998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++|+..++++++.++. +..++..++.++...|++++|+..++++++..|.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999999988765 7888999999999999999999999999998876
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.8e-07 Score=81.77 Aligned_cols=95 Identities=13% Similarity=-0.044 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.++++++..+. +...+..++.++...|++++|...++++++..|. ++.++..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3444455555555555555555555554433 4555555555555555555555555555555544 4555555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 001966 939 REGVMDYAAKVLECMAS 955 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~ 955 (989)
..|++++|.+.++++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555543
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=1.3e-07 Score=83.71 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 858 FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
..+..++..+...|++++|++.++++++..+. +..++..++.++...|++++|+..++++++..|. ++.++..++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 47788889999999999999999999987654 7889999999999999999999999999998877 889999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcC
Q 001966 938 LREGVMDYAAKVLECMASFGWVSN-SISLADIVKGENSG 975 (989)
Q Consensus 938 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 975 (989)
...|++++|...++++.+. .|+ ...+..++..+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhc
Confidence 9999999999999999764 564 56667666665443
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=1e-07 Score=89.31 Aligned_cols=106 Identities=16% Similarity=0.036 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|+..|+++++ +.|+.. .+..++.++...|++++|+..++++++.++. +..+|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44666677777777777777777777776 556433 6666667777777777777777777766544 6667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHhHH
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFASCR 931 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 931 (989)
++...|++++|+..|+++++..|+ +...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 117 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN-GGSDAM 117 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS-SCCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 777777777777777777766655 444433
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=4.3e-08 Score=89.31 Aligned_cols=104 Identities=8% Similarity=-0.089 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIK 900 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 900 (989)
...+..++..+...|++++|...|+++++ ..|+.. .|..++.++...|++++|+..++++++.++. ++..+..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 45677788888999999999999999998 778555 7888889999999999999999999988766 7888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHh
Q 001966 901 ALCKREEYSEALRLLNEMGESGFRLGFAS 929 (989)
Q Consensus 901 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 929 (989)
++...|++++|+..++++++..|. ++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 122 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAA-QPAH 122 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT-CGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-Ccch
Confidence 999999999999999999888765 4443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=7.4e-08 Score=87.08 Aligned_cols=99 Identities=13% Similarity=-0.092 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 856 DNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 856 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
+...+..++..+...|++++|+..++++++..+. +..+|..++.++...|++++|+..++++++..|. ++.++..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3446777777777888888888888887776654 6777888888888888888888888888877776 7777888888
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 001966 936 DFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 936 ~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+|...|++++|...++++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888877653
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.72 E-value=8.2e-08 Score=90.05 Aligned_cols=99 Identities=8% Similarity=-0.132 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.|+++++..+. +..+|..++.+|.+.|++++|+..++++++..|. ++.+|..++.+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5666777777888888888888888777655 7777888888888888888888888888887776 7777888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCccc
Q 001966 939 REGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 939 ~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
..|++++|.+.++++++. .|+
T Consensus 91 ~~g~~~~A~~~~~~al~~--~p~ 111 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA--EGN 111 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH--HSS
T ss_pred HccCHHHHHHHHHHHHHh--CCC
Confidence 888888888888877654 564
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=1.1e-07 Score=93.05 Aligned_cols=153 Identities=11% Similarity=-0.047 Sum_probs=116.7
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccC
Q 001966 833 NRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDK----R-MPISAEAYKAIIKALCKRE 906 (989)
Q Consensus 833 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g 906 (989)
...|++++|.+.++.+.. ..+. ...+..++..+...|++++|+..++++++. + .+....++..++..+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457999999996666544 2223 347888899999999999999999999872 1 1124567889999999999
Q ss_pred CHHHHHHHHHHHHHC---CC-c--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-c----chhHHHHHhhhhcC
Q 001966 907 EYSEALRLLNEMGES---GF-R--LGFASCRTVANDFLREGVMDYAAKVLECMASFGWVS-N----SISLADIVKGENSG 975 (989)
Q Consensus 907 ~~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~ 975 (989)
++++|+..++++++. .+ . ....++..++.++...|++++|...++++.+..-.. + ...+..++..+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999998876 32 2 135568899999999999999999999987531111 1 23458889999999
Q ss_pred CChhhHHHHHhh
Q 001966 976 VDLDESKDLMKQ 987 (989)
Q Consensus 976 g~~~~a~~~~~~ 987 (989)
|++++|.+.+++
T Consensus 161 g~~~~A~~~~~~ 172 (203)
T 3gw4_A 161 KNLLEAQQHWLR 172 (203)
T ss_dssp TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998875
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=2.4e-07 Score=80.82 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001966 821 ATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAII 899 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 899 (989)
+...+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|...++++++..+. +...+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 456788899999999999999999999998 6774 457888899999999999999999999998765 889999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDF 937 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (989)
.++...|++++|...++++++..|. ++.++..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHhh
Confidence 9999999999999999999999887 788877777654
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=3.6e-07 Score=83.77 Aligned_cols=95 Identities=16% Similarity=0.007 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAN 935 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 935 (989)
.+..++..+...|++++|++.++++++..+. + ..+|..++.++...|++++|+..++++++..|+ ++.++..++.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHH
Confidence 3333444444444444444444444443221 1 344444444444444444444444444444443 4444444444
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 001966 936 DFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 936 ~~~~~g~~~~A~~~~~~~~~ 955 (989)
+|...|++++|...++++++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555444443
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=1.5e-07 Score=83.58 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C----HHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI--S----AEA 894 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~ 894 (989)
..++..++..+.+.|++++|+..|+++++ +.|+.. .|..++.++...|++++|++.++++++.++.. + ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34677788888888888888888888888 777655 67778888888888888888888887653321 1 246
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|..++.++...|++++|++.|+++++..++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 778888888899999999999988876644
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.63 E-value=1.3e-07 Score=84.52 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC-------HHhHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG-------FASCR 931 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 931 (989)
.+..++..+...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. + +.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHH
Confidence 5566667777777777777777777766544 6677777777777777777777777777766544 3 66777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhh
Q 001966 932 TVANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGE 972 (989)
Q Consensus 932 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 972 (989)
.++.+|...|++++|.+.++++.+. .|+...+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7777788888888888887777664 45555555544443
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.63 E-value=2e-08 Score=111.83 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=121.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----------------HHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----------------FTYY 861 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~ 861 (989)
..+++++|++.|+...+ ..|+ ...|..++..+.+.|++++|+..|+++++ +.|+. ..|.
T Consensus 246 ~l~~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEEEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHH
Confidence 44566677777765544 2333 45788899999999999999999999998 66654 5788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
.++.++.+.|++++|+..++++++..+. +..+|..++.+|...|++++|+..|+++++..|. +..++..++.++...|
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998766 8899999999999999999999999999999887 8889999999999999
Q ss_pred ChhHHH-HHHHHHHhC
Q 001966 942 VMDYAA-KVLECMASF 956 (989)
Q Consensus 942 ~~~~A~-~~~~~~~~~ 956 (989)
++++|. ..+++|...
T Consensus 400 ~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 400 EHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhh
Confidence 998775 456666543
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.61 E-value=1.6e-07 Score=82.47 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
.+..++..+...|++++|+..|+++++ ..|+.. .|..++.++...|++++|+..++++++.++. +..++..++.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 355667778888889999998888888 777544 7778888888889999999999998888766 788888888889
Q ss_pred HccCCHHHHHHHHHHHHHCCCc
Q 001966 903 CKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 903 ~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
...|++++|+..++++++..|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999988887765
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=6.1e-07 Score=82.15 Aligned_cols=117 Identities=14% Similarity=0.013 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEA 894 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 894 (989)
+.+...+..++..+...|++++|...|++.++ ..|+. ..+..++.++...|++++|++.++++++..+. +..+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 34567899999999999999999999999999 78884 57888899999999999999999999988655 7899
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 895 YKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 895 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++.++...|++++|...++++++..|+ +..++..++.+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHhh
Confidence 999999999999999999999999999887 77777777766543
No 170
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.60 E-value=9.6e-07 Score=100.19 Aligned_cols=170 Identities=10% Similarity=0.015 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 001966 802 NMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGN----------RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK 869 (989)
Q Consensus 802 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 869 (989)
..++|++.++++... .|+ ..+|+.-..++...|+ ++++++.++++++ ..|+.. +|..-.+++.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 345677788777773 344 5567776666666666 7888888888887 677555 77777777878
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc------
Q 001966 870 EG--NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKRE-EYSEALRLLNEMGESGFRLGFASCRTVANDFLRE------ 940 (989)
Q Consensus 870 ~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 940 (989)
.| ++++|++.++++++.++. +..+|...+.++.+.| .++++++.++++++.+|. +..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 78 668888888888887766 7888888888888888 788888888888888877 788888888777763
Q ss_pred --------CChhHHHHHHHHHHhCCCccc-chhHHHHHhhhhcCCChh
Q 001966 941 --------GVMDYAAKVLECMASFGWVSN-SISLADIVKGENSGVDLD 979 (989)
Q Consensus 941 --------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 979 (989)
+.+++|.+.+++++.. .|+ ...|..+...+...|..+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4567788888877654 674 556666666666655543
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=3.6e-07 Score=82.49 Aligned_cols=103 Identities=15% Similarity=-0.005 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001966 819 KPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKA 897 (989)
Q Consensus 819 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 897 (989)
+.+...+..++..+...|++++|...|+++++ ..|+. ..+..++.++...|++++|+..++++++.++. +..+|..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 34567788888888888888899888888888 66754 47778888888899999999999998887755 7888889
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++.++...|++++|+..++++++..|+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999988877644
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.59 E-value=3e-07 Score=85.93 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC------------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGI------------------EPDNF-TYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~------------------~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
.+...+..+.+.|++++|+..|+++++ + .|... .+..++.++.+.|++++|+..+++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALT--RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444555555566666666666666555 2 22222 45555555666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 885 DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.++. +..+|..++.++...|++++|+..++++++..|.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 55443 5555666666666666666666666666655554
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.59 E-value=6.8e-07 Score=79.59 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC---HHhHHHHH
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPISA---EAYKAIIKALCKREEYSEALRLLNEMGESGFRLG---FASCRTVA 934 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 934 (989)
..++..+...|++++|++.++++++..+. +. .++..++.++.+.|++++|+..++++++..|+ + +.++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 33445555566666666666666554333 22 45555666666666666666666666665554 3 45566666
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 001966 935 NDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 935 ~~~~~~g~~~~A~~~~~~~~~ 955 (989)
.+|...|++++|...++++++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
No 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=9.9e-07 Score=100.07 Aligned_cols=171 Identities=10% Similarity=0.029 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 001966 769 QEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQN----------MEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMG-- 836 (989)
Q Consensus 769 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-- 836 (989)
++|++.+++++..... +..+|+.-...+...|+ +++++++++++.+.. +-+..+|..-...+.+.|
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4556666666654211 33445554444544454 788888888888743 455778888888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---------
Q 001966 837 NRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEG-NVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR--------- 905 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 905 (989)
+++++++.++++++ .+|.+. +|.....++.+.| .+++++++++++++.++. |..+|...+.++.+.
T Consensus 124 ~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 77999999999999 788555 8888888888888 899999999999998877 889999888887763
Q ss_pred -----CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhH
Q 001966 906 -----EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDY 945 (989)
Q Consensus 906 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 945 (989)
+.+++|++.+.+++...|+ +..+|+.+.+.+.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 6689999999999999998 99999999999999998665
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.58 E-value=2.7e-07 Score=82.80 Aligned_cols=98 Identities=12% Similarity=-0.016 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------C
Q 001966 861 YVMIDAHCKEGNVMEALKLKDLIFDKRMPI------S-----AEAYKAIIKALCKREEYSEALRLLNEMGES-------G 922 (989)
Q Consensus 861 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 922 (989)
...+..+.+.|++++|+..|+++++..+.. + ..+|..++.++.+.|++++|+..++++++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334455555556666666665555543321 2 237888888888888888888888888888 8
Q ss_pred CccCHHhH----HHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 923 FRLGFASC----RTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 923 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
|+ +..+| +.+|.++...|++++|+..|+++++. .|+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel--~p~ 134 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM--IEE 134 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 77 78888 88999999999999999999888763 563
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.56 E-value=7e-07 Score=79.50 Aligned_cols=106 Identities=11% Similarity=0.017 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 001966 825 YRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS---AEAYKA 897 (989)
Q Consensus 825 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 897 (989)
+..++..+...|++++|...|+++++ ..|+.. .+..++.++...|++++|+..++++++..+. + ..++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 45677889999999999999999998 566544 7788899999999999999999999987655 4 788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHH
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVA 934 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 934 (989)
++.++...|++++|+..++++++..|+ ++.+.....
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~ 117 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPG-SDAARVAQE 117 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHHH
Confidence 999999999999999999999999877 555544333
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=3.3e-07 Score=101.91 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA----------------TITYRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
....+..+...+.+.|++++|+..|++..+. .|+ ...|..++.+|.+.|++++|+..+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3467888889999999999999999999883 343 4788999999999999999999999999
Q ss_pred hCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHHHHC
Q 001966 850 GKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALR-LLNEMGES 921 (989)
Q Consensus 850 ~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~ 921 (989)
+ +.|+.. .+..++.++...|++++|+..|+++++..+. +..++..++.++.+.|+.++|.+ .+.+|...
T Consensus 345 ~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 345 G--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred h--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 778655 8888999999999999999999999998765 77889999999999999888775 44544433
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.54 E-value=1.8e-07 Score=87.45 Aligned_cols=110 Identities=9% Similarity=-0.043 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDK------------------RMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
.+...+..+.+.|++++|+..|+++++. ++. +..+|..++.++.+.|++++|+..++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 5677889999999999999999999986 222 457899999999999999999999999999
Q ss_pred CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch-h-HHHHHhhh
Q 001966 921 SGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI-S-LADIVKGE 972 (989)
Q Consensus 921 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~-~~~l~~~~ 972 (989)
..|. ++.+|..+|.+|...|++++|...++++++. .|+.. . ...+....
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMKIVT 142 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 9988 8999999999999999999999999999875 78643 3 33444433
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.54 E-value=4.8e-07 Score=78.06 Aligned_cols=97 Identities=18% Similarity=0.037 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-cCHHhHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR-LGFASCRTVANDF 937 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 937 (989)
.+..++..+...|++++|+..++++++..+. +..++..++.++...|++++|+..++++++..|. .+..++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5566667777777777777777777766544 6677777777777777777777777777776543 1366677777777
Q ss_pred Hhc-CChhHHHHHHHHHHhC
Q 001966 938 LRE-GVMDYAAKVLECMASF 956 (989)
Q Consensus 938 ~~~-g~~~~A~~~~~~~~~~ 956 (989)
... |++++|.+.++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 777 7777777777777553
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=1.9e-07 Score=83.77 Aligned_cols=98 Identities=15% Similarity=-0.010 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-------------NFTYYVMIDAHCKEGNVMEALKLKDLIFDK---- 886 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 886 (989)
.+...+..+.+.|++++|+..|+++++ +.|+ ...|..++.++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445566667777777777777777777 5555 127788888888888888888888888887
Q ss_pred ---CCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 887 ---RMPISAEAY----KAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 887 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
++. +..+| ...+.++...|++++|+..|+++++..|.
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 655 67788 89999999999999999999999988766
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=1.6e-07 Score=82.08 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=41.1
Q ss_pred CCHhHHHHHHHHHHhCCC---CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGI---EPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEA 911 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~---~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 911 (989)
|++++|+..|+++++ + .|+.. .+..++.++...|++++|++.++++++..+. +..++..++.++...|++++|
T Consensus 4 g~~~~A~~~~~~al~--~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIA--SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ---CCCHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHH--cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 445555555555554 3 23222 4444455555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHHCCCc
Q 001966 912 LRLLNEMGESGFR 924 (989)
Q Consensus 912 ~~~~~~~~~~~~~ 924 (989)
+..++++++..|.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 5555555544433
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.53 E-value=1.6e-07 Score=99.84 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 788 DTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAH 867 (989)
Q Consensus 788 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 867 (989)
..+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 4455556666666666666666666655 2343321 112233333322211 12677788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH-HHhcCChhHH
Q 001966 868 CKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVAND-FLREGVMDYA 946 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 946 (989)
.+.|++++|+..++++++.++. +..+|..++.+|...|++++|+..|+++++..|. +..++..|+.+ ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887655 7888888888888888888888888888888776 77777777777 3445666777
Q ss_pred HHHHHHHHhCCCccc
Q 001966 947 AKVLECMASFGWVSN 961 (989)
Q Consensus 947 ~~~~~~~~~~~~~p~ 961 (989)
.+.|++|.+. .|+
T Consensus 319 ~~~~~~~l~~--~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKG--KDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCC--CCC
Confidence 8888887543 453
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=2.5e-07 Score=103.29 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 001966 826 RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK 904 (989)
Q Consensus 826 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 904 (989)
..++..+...|++++|+..|+++++ +.|+.. .+..++.++.+.|++++|++.++++++.++. +..+|..++.+|..
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344556778888889888888888 677644 7888888888999999999999999888765 78888889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 001966 905 REEYSEALRLLNEMGESGFRLGFASCRTVAND--FLREGVMDYAAKVLE 951 (989)
Q Consensus 905 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 951 (989)
.|++++|++.++++++..|+ +..++..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999888877 67777777777 888899999988887
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=1.8e-07 Score=81.71 Aligned_cols=92 Identities=15% Similarity=0.013 Sum_probs=78.3
Q ss_pred hcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhH
Q 001966 869 KEGNVMEALKLKDLIFDKR---MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDY 945 (989)
Q Consensus 869 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 945 (989)
..|++++|+..|+++++.+ +. +..++..++.++...|++++|+..++++++..|+ ++.++..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 4689999999999999874 33 6788999999999999999999999999999988 89999999999999999999
Q ss_pred HHHHHHHHHhCCCcccchh
Q 001966 946 AAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 946 A~~~~~~~~~~~~~p~~~~ 964 (989)
|...++++++. .|+...
T Consensus 80 A~~~~~~al~~--~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAE--TSDDET 96 (117)
T ss_dssp HHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHHHh--CCCcHH
Confidence 99999999864 565433
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=8.2e-07 Score=82.74 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP---DN----FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-IS---- 891 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---- 891 (989)
++..++..+...|++++|...++++++ +.+ +. .++..++..+...|++++|++.++++++.... .+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 556666666777777777777777665 211 11 25666777888888888888888887654111 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 892 AEAYKAIIKALCKREEYSEALRLLNEMGESGFR-----LGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 892 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
..++..++.++...|++++|...++++++.... ....++..++.+|...|++++|.+.++++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 446777888888888888888888887754211 1245678889999999999999999988765
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=5.5e-07 Score=96.61 Aligned_cols=89 Identities=12% Similarity=-0.015 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIV 969 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 969 (989)
+..+|..++.+|.+.|++++|+..++++++..|+ ++.++..++.+|...|++++|.+.++++++. .|+ ...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3445555666666666666666666666665555 5556666666666666666666666665543 443 44455555
Q ss_pred hhhhcCCChhhHH
Q 001966 970 KGENSGVDLDESK 982 (989)
Q Consensus 970 ~~~~~~g~~~~a~ 982 (989)
..+...++.++++
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 187
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.45 E-value=6.7e-07 Score=79.72 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPD-NFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP--IS----AEAY 895 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 895 (989)
..+..++..+...|++++|...++++++ ..|+ ...+..++.++...|++++|+..++++++..+. ++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4566677777777777777777777777 4554 336666777777778888888887777765432 12 6677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 896 KAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 896 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
..++.++...|++++|...++++++..+ ++.....++.+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 7788888888888888888888877664 4555555554433
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=3.5e-07 Score=102.02 Aligned_cols=123 Identities=12% Similarity=-0.020 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLR 939 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 939 (989)
+..++..+.+.|++++|++.++++++..+. +..+|..++.+|.+.|++++|+..++++++..|+ ++.++..+|.+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344556677899999999999999998766 8999999999999999999999999999999988 89999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCccc-chhHHHHHhh--hhcCCChhhHHHHHh
Q 001966 940 EGVMDYAAKVLECMASFGWVSN-SISLADIVKG--ENSGVDLDESKDLMK 986 (989)
Q Consensus 940 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 986 (989)
.|++++|.+.++++++. .|+ ...+..++.. +..+|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999875 674 5667777776 788899999998876
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=1.5e-06 Score=93.21 Aligned_cols=94 Identities=13% Similarity=-0.033 Sum_probs=83.3
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHH
Q 001966 854 EPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 854 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 932 (989)
.|.. ..|..++.++.+.|++++|++.++++++..+. +..+|..++.+|...|++++|+..++++++..|. +..++..
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~ 346 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4433 37888999999999999999999999998765 8899999999999999999999999999999988 8899999
Q ss_pred HHHHHHhcCChhHHHHH
Q 001966 933 VANDFLREGVMDYAAKV 949 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~ 949 (989)
++.++...++.+++.+.
T Consensus 347 l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888877543
No 190
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=1.2e-06 Score=75.37 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 001966 822 TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMP-ISAEAYKAII 899 (989)
Q Consensus 822 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 899 (989)
...+..++..+...|++++|...++++++ ..|+. ..+..++.++...|++++|++.++++++..+. .+..++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 44566677777777778888877777777 55543 36677777777788888888888888776422 1567777788
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHCCCc
Q 001966 900 KALCKR-EEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 900 ~~~~~~-g~~~~A~~~~~~~~~~~~~ 924 (989)
.++... |++++|++.++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 888888 8888888888887777654
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.3e-05 Score=88.87 Aligned_cols=197 Identities=11% Similarity=0.024 Sum_probs=116.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCh-----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC
Q 001966 725 LSGCCKEEKLEQALELFRDMLEKGLAST-----------------LSFNTLIEFLCISNKLQEAHQLLDAMLEE-QVNPN 786 (989)
Q Consensus 725 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 786 (989)
...+.+.|++++|++.|..+++..+... .++..++..|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556678888888888888888765211 13566777777777777777777776642 11112
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCC-
Q 001966 787 H----DTYTTLINQYCKVQNMEKAKQLFLEMQQ----RNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLG--KGIE- 854 (989)
Q Consensus 787 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~- 854 (989)
. .+.+.+...+...|++++|++++++... .+..+. ..++..++..+...|++++|..+++++.. .+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333344455677777777766543 122222 34566677777777777777777776655 1221
Q ss_pred -CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 855 -PDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDK--RM-PI-S--AEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 855 -p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|.. ..+..++..|...|++++|..+++++... .. .| . ...+..++..+...|++++|...+.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111 24555667777777777777777766542 11 11 1 234555666666777777777777766655
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=7.2e-07 Score=94.67 Aligned_cols=152 Identities=9% Similarity=-0.053 Sum_probs=91.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001966 751 STLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLN 830 (989)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 830 (989)
....+..++..+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3556778888999999999999999999874 344332 233455555543331 237888999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCH
Q 001966 831 GYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKA-LCKREEY 908 (989)
Q Consensus 831 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 908 (989)
+|.+.|++++|+..++++++ +.|++. .+..++.++...|++++|++.|+++++..+. +..++..+..+ ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 788654 8889999999999999999999999988765 77788888777 4456788
Q ss_pred HHHHHHHHHHHHCCCc
Q 001966 909 SEALRLLNEMGESGFR 924 (989)
Q Consensus 909 ~~A~~~~~~~~~~~~~ 924 (989)
+++...|.++....|.
T Consensus 316 ~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDE 331 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHhhCCCCC
Confidence 8999999999888765
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.35 E-value=6.8e-07 Score=80.01 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEY----------SEALRLLNEMGESGFRLGFASCRTVANDFLRE 940 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 940 (989)
+.+++|++.++++++.+|. +.++|..++.++...|++ ++|+..|+++++..|+ +..+|+.+|.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 4455555555555555544 555555555555555443 3666666666666655 566666666666655
Q ss_pred C-----------ChhHHHHHHHHHHhCCCcccch
Q 001966 941 G-----------VMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 941 g-----------~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
| ++++|++.|+++++. .|+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 3 566666666666543 55543
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.3e-05 Score=86.83 Aligned_cols=197 Identities=12% Similarity=0.086 Sum_probs=147.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC
Q 001966 690 IDGFCKAGDLTEPFQLFDEMTKRGVPLD----------------GSVYNALLSGCCKEEKLEQALELFRDMLEKGL--AS 751 (989)
Q Consensus 690 i~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 751 (989)
...+.+.|++++|++.|..+.+...... ..++..++..|...|++++|.+.+..+..... .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999999988642211 12477889999999999999999999887433 22
Q ss_pred h----hhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 001966 752 T----LSFNTLIEFLCISNKLQEAHQLLDAMLE----EQVNPN-HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NL-- 818 (989)
Q Consensus 752 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 818 (989)
. .+...+...+...|++++|..++++... .+..+. ..++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1233344555567899999999998863 233333 457788999999999999999999988653 11
Q ss_pred CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CC-CC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 819 KPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGK--GI-EP-DN--FTYYVMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 819 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.+. ..++..++..|...|++++|..++++.+.. .+ .| .. ..+..++..+...|++++|...+.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 222 457889999999999999999999998761 11 12 11 24556678888999999999999988764
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.31 E-value=1.1e-05 Score=72.42 Aligned_cols=111 Identities=8% Similarity=0.019 Sum_probs=84.7
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 001966 836 GNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEA 911 (989)
Q Consensus 836 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 911 (989)
+++++|+..|++..+.| .|+.. |+..|...+.+++|++.|+++.+.+ ++.++..++..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35777888888887755 33322 6677777777888888888888764 67778888888877 7888888
Q ss_pred HHHHHHHHHCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 001966 912 LRLLNEMGESGFRLGFASCRTVANDFLR----EGVMDYAAKVLECMASFG 957 (989)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 957 (989)
...++++.+.+ ++.++..|+.+|.. .+++++|.++++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888775 67788888888888 788888888888887764
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=3.2e-06 Score=78.64 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC----HH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNL-KPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLGKG-IEPD----NF 858 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~ 858 (989)
++..+...+...|++++|+..+++..+... .++ ..++..++..+...|++++|...++++++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666666677777777777766654210 011 1367777788888888888888888877610 0111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKR--MP---ISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
.+..++.++...|++++|.+.++++++.. .. .....+..++.++...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56677788888999999999888887541 11 123567788889999999999999999887653
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=9.7e-07 Score=76.03 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC------HHhHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLG------FASCRT 932 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 932 (989)
.+..++..+...|++++|++.++++++..+. +..+|..++.++...|++++|+..++++++..|+ + ..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 4445555555555555555555555554433 4555555555555555555555555555555544 3 444455
Q ss_pred HHHHHHhcCChhHHHH
Q 001966 933 VANDFLREGVMDYAAK 948 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~ 948 (989)
++.++...|++++|..
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 5555555554444433
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=7.1e-07 Score=76.89 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-------ch
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-------SI 963 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 963 (989)
+...|..++..+...|++++|+..++++++..|. ++.++..+|.+|...|++++|++.++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4567778888888888888888888888888877 7888888888888888888888888888754 564 45
Q ss_pred hHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 964 SLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 964 ~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
.+..++..+...|+.++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 6677777777778877777666554
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.14 E-value=1.7e-05 Score=65.09 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
.+..++..+...|++++|++.++++++..+. +..++..++.++.+.|++++|+..++++++..|. ++.++..++.++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 4555666666666666666666666665443 5666666666666666666666666666666655 5666666666655
Q ss_pred hc
Q 001966 939 RE 940 (989)
Q Consensus 939 ~~ 940 (989)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=4.9e-05 Score=68.09 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK----EGNVMEA 876 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 876 (989)
+++++|++.|++..+.| .|+.. |...|...+.+++|+..|++..+.| +...+..|+.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788888888888766 33333 7777777778888888998888843 56677888888887 7889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCK----REEYSEALRLLNEMGESG 922 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 922 (989)
++.|+++.+.+ ++.++..|+..|.. .++.++|...++++.+.+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998865 67888889988888 889999999999998887
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.13 E-value=4.3e-06 Score=74.86 Aligned_cols=88 Identities=11% Similarity=-0.039 Sum_probs=66.6
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 834 RMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGN----------VMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 834 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
+.+.+++|+..+++.++ +.|+.. .|..++.++...++ +++|+..|+++++.+|. +..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34556777777777777 666444 66666666666655 45888888888888766 788888888888
Q ss_pred HccC-----------CHHHHHHHHHHHHHCCCc
Q 001966 903 CKRE-----------EYSEALRLLNEMGESGFR 924 (989)
Q Consensus 903 ~~~g-----------~~~~A~~~~~~~~~~~~~ 924 (989)
...| ++++|++.|+++++.+|+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 8774 899999999999998876
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=1.1e-05 Score=69.93 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 876 ALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 876 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|++.++++++..+. +...+..++.++...|++++|+..++++++..|. ++.++..++.+|...|++++|...++++++
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555554433 4555555555555555555555555555555544 455555555555555555555555555543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.09 E-value=1e-05 Score=69.99 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 839 SEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
++|+..|+++++ ..|+.. .+..++.++...|++++|++.++++++.++. +..+|..++.++...|++++|+..+++
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457788888888 677554 7788888899999999999999999887765 788889999999999999999999999
Q ss_pred HHHCCCc
Q 001966 918 MGESGFR 924 (989)
Q Consensus 918 ~~~~~~~ 924 (989)
+++..|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8876543
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=7.4e-05 Score=82.41 Aligned_cols=123 Identities=10% Similarity=-0.075 Sum_probs=84.0
Q ss_pred HHhcCCHhHHHHHHHHHHh---CCCCCC---HH-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH---HHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLG---KGIEPD---NF-TYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISA---EAYK 896 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~---~g~~p~---~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~ 896 (989)
+...|++++|+.++++.++ .-+.|+ .. +++.|+.+|...|++++|+.+++++++ .|+. ++ ..++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 4566777777777777665 112232 22 566777778888888888887777764 2333 32 3477
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH-----CCCccCHHh---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 897 AIIKALCKREEYSEALRLLNEMGE-----SGFRLGFAS---CRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
.|+..|..+|++++|+.+++++++ .|++ ++.+ ...++.++...|.+++|+.+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887764 3544 4443 467778888888888888888888753
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=2.1e-05 Score=64.43 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISLADIV 969 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 969 (989)
+...+..++..+...|++++|+..++++++..|. ++.++..++.+|...|++++|...++++.+. .|+ ...+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4678889999999999999999999999999887 8999999999999999999999999999874 674 66777777
Q ss_pred hhhhcC
Q 001966 970 KGENSG 975 (989)
Q Consensus 970 ~~~~~~ 975 (989)
..+...
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776543
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.92 E-value=0.00045 Score=67.96 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=77.8
Q ss_pred CHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CC
Q 001966 837 NRSEVFVVFEEMLGKGIEPDN---FTYYVMIDAHCKE-----GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKR-EE 907 (989)
Q Consensus 837 ~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 907 (989)
...+|...++++++ ++|+. ..|..++..|... |+.++|.++|+++++.++.-+..++...++.++.. |+
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 35777888888888 88872 3677777777773 88888888888888877654578888888888884 88
Q ss_pred HHHHHHHHHHHHHCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 908 YSEALRLLNEMGESGFR--LGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 908 ~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.++|.+.++++++..|. |+-.. ...+.-++|..+++++
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~l--------an~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKL--------LVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHH--------HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhH--------HHHHHHHHHHHHHHHh
Confidence 88888888888888777 43222 2223345666666554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.90 E-value=2.2e-05 Score=65.81 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
+..++..++.++...|++++|+..++++++..|. ++.+|..+|.+|...|++++|.+.++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555566666666666666666666666665555 555566666666666666666666665544
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=0.00011 Score=80.99 Aligned_cols=124 Identities=6% Similarity=-0.074 Sum_probs=83.0
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CC-CCCCHH-HHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQR---NLKPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLG-----KG-IEPDNF-TYYV 862 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~~-~~~~ 862 (989)
+..+|++++|+.++++.++. -+.|+ ..+++.|+..|...|++++|..+++++++ .| -.|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776666541 11222 34677777777777787777777777665 12 233333 6777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFD-----KRMPISA---EAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
|+.+|..+|++++|+.+++++++ .|+. ++ .....+..++...|++++|+.+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888774 3543 33 34556777778888888888888887653
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.82 E-value=4.3e-05 Score=63.96 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=53.0
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 001966 854 EPDN-FTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGF 923 (989)
Q Consensus 854 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 923 (989)
.|+. ..+..++.++...|++++|++.++++++.++. +..+|..++.+|...|++++|+..++++++..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3543 36777888888888888888888888887765 677888888888888888888888888876643
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.68 E-value=4.9e-05 Score=63.47 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcC
Q 001966 863 MIDAHCKEGNVMEALKLKDLIFDKRMPISAE-AYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREG 941 (989)
Q Consensus 863 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 941 (989)
.+..+...|++++|++.++++++..+. +.. +|..++.++...|++++|+..++++++..|+ ++.++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------H
Confidence 445566677777777777777766544 566 7777777777777777777777777777665 4444421 4
Q ss_pred ChhHHHHHHHHH
Q 001966 942 VMDYAAKVLECM 953 (989)
Q Consensus 942 ~~~~A~~~~~~~ 953 (989)
.+.+|...+++.
T Consensus 76 ~~~~a~~~~~~~ 87 (99)
T 2kc7_A 76 MVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.54 E-value=0.00037 Score=56.76 Aligned_cols=69 Identities=16% Similarity=0.012 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 001966 890 ISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSN 961 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 961 (989)
.++..+..++.++...++ .++|..+++++++..|+ ++.+...+|..+...|++++|+..++++++. .|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 478888888888876555 78999999999999888 8999999999999999999999999998765 454
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=0.00023 Score=59.22 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=58.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCccCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc-chhH
Q 001966 897 AIIKALCKREEYSEALRLLNEMGESGFRLGFA-SCRTVANDFLREGVMDYAAKVLECMASFGWVSN-SISL 965 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 965 (989)
..+..+.+.|++++|+..++++++..|. ++. ++..+|.+|...|++++|.+.++++++. .|+ ...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 4677889999999999999999999988 888 9999999999999999999999999875 675 3344
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.49 E-value=0.0029 Score=65.32 Aligned_cols=144 Identities=9% Similarity=-0.023 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHH--HhcC---CHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh---cC-C----HHHHHHHHHHHH
Q 001966 819 KPATITYRSLLNGY--NRMG---NRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCK---EG-N----VMEALKLKDLIF 884 (989)
Q Consensus 819 ~p~~~~~~~l~~~~--~~~g---~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~---~g-~----~~~A~~~~~~~~ 884 (989)
+.+...|...+++. ...+ ...+|..+|+++++ +.|+.. .+..+..++.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 44445555554443 2222 34677778888877 777754 44433333321 11 0 111111222222
Q ss_pred --hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 885 --DKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 885 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
..+ +.++.+|..++..+...|++++|+..+++++..+ |+...|..++.++.-.|++++|.+.++++... .|..
T Consensus 269 a~~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 269 TLPEL-NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp TCGGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred hcccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 223 3478888888888888899999999999999987 46778888999999999999999999988764 6765
Q ss_pred hhHHHHH
Q 001966 963 ISLADIV 969 (989)
Q Consensus 963 ~~~~~l~ 969 (989)
.++....
T Consensus 344 ~t~~~~~ 350 (372)
T 3ly7_A 344 NTLYWIE 350 (372)
T ss_dssp HHHHHHH
T ss_pred ChHHHHh
Confidence 5544333
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.46 E-value=0.0031 Score=62.11 Aligned_cols=87 Identities=9% Similarity=-0.035 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhc-CChhH
Q 001966 873 VMEALKLKDLIFDKRMPI-SAEAYKAIIKALCKR-----EEYSEALRLLNEMGESGFRLGFASCRTVANDFLRE-GVMDY 945 (989)
Q Consensus 873 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 945 (989)
..+|...++++++.++.- +..+|..++..|.+. |+.++|.+.|+++++.+|.-+..++..+++.++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 578889999999876431 356899999999985 99999999999999999874589999999999885 99999
Q ss_pred HHHHHHHHHhCCCc
Q 001966 946 AAKVLECMASFGWV 959 (989)
Q Consensus 946 A~~~~~~~~~~~~~ 959 (989)
|.+.++++++....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999886444
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.38 E-value=0.0011 Score=58.61 Aligned_cols=85 Identities=13% Similarity=-0.017 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCC-CccCHHhHHHHHHHHHhcCChhHHHHH
Q 001966 874 MEALKLKDLIFDKRMPISAEAYKAIIKALCKRE---EYSEALRLLNEMGESG-FRLGFASCRTVANDFLREGVMDYAAKV 949 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 949 (989)
..+.+.|.+..+.++ ++..+...+++++.+.+ +.++++.+++++.+.. |.-+...++.|+.+|++.|++++|++.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344445555554443 35566666666666655 4446666666655554 321345556666666666666666666
Q ss_pred HHHHHhCCCccc
Q 001966 950 LECMASFGWVSN 961 (989)
Q Consensus 950 ~~~~~~~~~~p~ 961 (989)
++.+++. +|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 6666543 554
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.32 E-value=0.0017 Score=67.09 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001966 715 PLDGSVYNALLSGCC--KEE---KLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDT 789 (989)
Q Consensus 715 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 789 (989)
+.+...|...+.+.. ..+ +..+|+.+|+++++..|....++..+..+|... ...+.. +...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~-~~~~ 256 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPL-DEKQ 256 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCC-CHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCC-chhh
Confidence 445555555554432 222 346788888888888887777776665555410 000000 1110
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCK 869 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 869 (989)
... ...|.+....+ . ..+.+..+|..+...+...|++++|...+++++. ++|+...|..++..+.-
T Consensus 257 ~~~----------l~~a~~a~~a~-~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 257 LAA----------LNTEIDNIVTL-P-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHH----------HHHHHHHHHTC-G-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHHHHHhc-c-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 000 11122211111 1 1244566666666666666777777777777777 55666666666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001966 870 EGNVMEALKLKDLIFDKRMPISAEAYKAI 898 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 898 (989)
.|++++|.+.|++++..+ |...+|...
T Consensus 323 ~G~~~eA~e~~~~AlrL~--P~~~t~~~~ 349 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLR--PGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHS--CSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CCcChHHHH
Confidence 777777777777777754 344454433
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.29 E-value=0.0013 Score=71.16 Aligned_cols=84 Identities=10% Similarity=0.024 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCccC---HHhHHHH
Q 001966 870 EGNVMEALKLKDLIFDK-----RMPIS---AEAYKAIIKALCKREEYSEALRLLNEMGES-----GFRLG---FASCRTV 933 (989)
Q Consensus 870 ~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~~l 933 (989)
.|++++|+.+++++++. |+. + ..+++.++.+|..+|++++|+.+++++++. +++ + ...++.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDS-NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChh-chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 35555555555555431 221 2 233555566666666666666666655532 322 3 3346677
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 001966 934 ANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 934 ~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
|.+|..+|++++|+.+++++++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.20 E-value=0.0017 Score=57.25 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=66.3
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHH
Q 001966 838 RSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG---NVMEALKLKDLIFDKR-MPISAEAYKAIIKALCKREEYSEALR 913 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 913 (989)
...+.+.|.+..+.| .++..+...+++++.+.+ +.++++.+++++.+.+ +.-+.+.++.++-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455666677666643 367778888888888888 5668999998888865 31256778888888899999999999
Q ss_pred HHHHHHHCCCc
Q 001966 914 LLNEMGESGFR 924 (989)
Q Consensus 914 ~~~~~~~~~~~ 924 (989)
+++.+++..|+
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999988876
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.07 E-value=0.0028 Score=68.51 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=56.5
Q ss_pred cCCHhHHHHHHHHHHh---CCCCCCH---H-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH---HHHHHHH
Q 001966 835 MGNRSEVFVVFEEMLG---KGIEPDN---F-TYYVMIDAHCKEGNVMEALKLKDLIFD-----KRMPISA---EAYKAII 899 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~---~g~~p~~---~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~ 899 (989)
.|++++|+.++++.++ .-+.|+. . +++.|+.+|...|++++|+.+++++++ .|+. ++ ..++.|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHH
Confidence 4667777777776665 1223332 2 566777777777888888777777764 2332 33 3477788
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~ 920 (989)
..|..+|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887764
No 220
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.03 E-value=0.84 Score=53.35 Aligned_cols=308 Identities=10% Similarity=0.006 Sum_probs=144.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 001966 658 FCKICDVDKAFQLYEEMCEKGVEPN--TLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGV--P-----LDGSVYNALLSGC 728 (989)
Q Consensus 658 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 728 (989)
....|+.++++.++...+..+-..+ ...-..+.-+....|..+++..++.......- . +....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455666666666655443210112 22333344445556665667776666554311 0 0111112222222
Q ss_pred HhcCC-HHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCH
Q 001966 729 CKEEK-LEQALELFRDMLEKGLAS--TLSFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTYT--TLINQYCKVQNM 803 (989)
Q Consensus 729 ~~~g~-~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~ 803 (989)
.-.|. -+++.+.+..++...... ..+-..|+..+.-.|+-+-...++..+.+.. +..... .+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 22232 245566666666543211 1222334444556666666666666655431 222222 233334466777
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHH
Q 001966 804 EKAKQLFLEMQQRNLKPATI-TY---RSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEAL 877 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~ 877 (989)
+.+..+++.+... .+.. -| ..++-+|+..|+......++..+.+ .++.. ....++-++...|+.+.+.
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~---d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS---DSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc---CCcHHHHHHHHHHHHhhccCCHHHHH
Confidence 7777777777652 2322 22 2344456667776666667777765 22222 2222334444456666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH--HccCC-HHHHHHHHHHHHHCCCccCHH--hHHHHHHHHHhcCC-----hhHHH
Q 001966 878 KLKDLIFDKRMPISAEAYKAIIKAL--CKREE-YSEALRLLNEMGESGFRLGFA--SCRTVANDFLREGV-----MDYAA 947 (989)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~-~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~-----~~~A~ 947 (989)
++++.+.+.+ ++.+....+.++ .-.|+ ..+|+..+..+.... +.+.. +...|+.+.....+ ..+-+
T Consensus 615 rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l 690 (963)
T 4ady_A 615 RIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVADIN 690 (963)
T ss_dssp HHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHHHH
Confidence 6665555432 344433333333 33333 367777777775432 21211 23334444333322 22233
Q ss_pred HHHHHHHh-CCCcccchhHHHHHhhhhcCCCh
Q 001966 948 KVLECMAS-FGWVSNSISLADIVKGENSGVDL 978 (989)
Q Consensus 948 ~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 978 (989)
+.+.+... +.-.|+..+...++.+....|+.
T Consensus 691 ~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 691 KNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 33333322 22234456667777776666654
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.013 Score=63.60 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=45.0
Q ss_pred HHhcCCHhHHHHHHHHHHhC---CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCH---HHHH
Q 001966 832 YNRMGNRSEVFVVFEEMLGK---GIEPDNF----TYYVMIDAHCKEGNVMEALKLKDLIFDK-----RMPISA---EAYK 896 (989)
Q Consensus 832 ~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~~~~ 896 (989)
+...|++++|+.++++.++. -+.|++. ++..++.+|...|++++|+.+++++++. |+. ++ ..++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHHH
Confidence 34455666666666666541 1222221 4555556666666666666666655531 221 22 2344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 001966 897 AIIKALCKREEYSEALRLLNEMG 919 (989)
Q Consensus 897 ~l~~~~~~~g~~~~A~~~~~~~~ 919 (989)
.|+..|..+|++++|+.++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555555554
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.94 E-value=0.004 Score=50.54 Aligned_cols=66 Identities=11% Similarity=-0.083 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 858 FTYYVMIDAHCKEGN---VMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 858 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
..+..++.++...++ .++|..+++++++.++. +..++..++..+.+.|++++|+..|+++++..|.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 355555555543333 56666677776666655 6666666666677777777777777776666554
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.87 E-value=0.0071 Score=50.49 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKR------MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASC 930 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 930 (989)
-+..++..+.+.|+++.|...++++++.. ..+...++..++.++.+.|++++|+.+++++++..|. +..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~ 83 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN 83 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 34455566666666666666666655431 1124455666666666666666666666666666655 44443
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.73 E-value=3.2e-06 Score=87.83 Aligned_cols=251 Identities=18% Similarity=0.161 Sum_probs=169.1
Q ss_pred cccccccchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcC
Q 001966 148 SDEFVCKGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFD 227 (989)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (989)
+......|.+|+.|++++.+.|++.+|++.|-++. |+..|..++....+.|.+++-+..+..+++ ...+
T Consensus 47 yA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-----~~ke 115 (624)
T 3lvg_A 47 FAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARK-----KARE 115 (624)
T ss_dssp SSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTST-----TCCS
T ss_pred HHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----Hhcc
Confidence 34444578999999999999999999999886653 445677889999999999998887766554 3455
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC--------------
Q 001966 228 VYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKG-------------- 293 (989)
Q Consensus 228 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------- 293 (989)
+..=+.|+-+|.+.+++.+-.+++ -.||+.-...+.+-+...|.|+.|.-+|..+....
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred cccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 566678999999999987754433 23788888888888888899998888887654321
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001966 294 ------LVPDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQID 367 (989)
Q Consensus 294 ------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 367 (989)
-.-+..||..+-.+|...+.+.-|...--.++-..- -...++.-|-+.|-+++-..+++.-+.. -...
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGL-ERAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cchh
Confidence 123566888888888888887777665544443211 1224566677788888888888777632 1235
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCC------ChhhHHHHHHHHHhcCChhHHH
Q 001966 368 LVIYNTLLKGFCKSGKMEKAREVLNEIIR-MGIEP------NSRTYTSLIQGYCRMRKMVSAF 423 (989)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~------~~~~~~~li~~~~~~g~~~~A~ 423 (989)
.-.|+.|.-.|+|- +.++-.+.++..-. .+++. +...|.-++-.|++-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66777777777765 33443333332211 12211 1234556666666666666554
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.67 E-value=0.013 Score=63.61 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CC-CCCCHH-H
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQR---NLKPA----TITYRSLLNGYNRMGNRSEVFVVFEEMLG-----KG-IEPDNF-T 859 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~~-~ 859 (989)
+..+..+|++++|+.++++..+. -+.|+ ..+++.++.+|...|++++|+.+++++++ .| ..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455678888888888888753 12233 34788888889999999999999988876 12 334443 6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
++.|+..|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998875
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.064 Score=64.55 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 001966 799 KVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEM 848 (989)
Q Consensus 799 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 848 (989)
..|++++|.++.+. ..+...|..++..+.+.|+++.|.+.|.++
T Consensus 664 ~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555554322 133445555555555555555555555544
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.017 Score=48.16 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC------CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccch
Q 001966 890 ISAEAYKAIIKALCKREEYSEALRLLNEMGESG------FRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSI 963 (989)
Q Consensus 890 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 963 (989)
.+..-+..++..+.+.|+++.|+..++++++.. ....+.++..|+.+|.+.|+++.|...++++.+ +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 356677899999999999999999999998752 112577899999999999999999999999976 478643
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.42 E-value=0.02 Score=48.46 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 855 PDNFTYYVMIDAHCKEGNVME---ALKLKDLIFDKR-MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 855 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|...+-..+++++.+..+... ++.+++.+...+ +.-..+....++-++.+.|++++|++.++.+++..|.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 344444444445544444333 444555444432 1112333444444455555555555555555544443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.23 E-value=0.029 Score=47.47 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCC-CccCHHhHHHHHHHHHhcCChhHH
Q 001966 871 GNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSE---ALRLLNEMGESG-FRLGFASCRTVANDFLREGVMDYA 946 (989)
Q Consensus 871 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 946 (989)
.....+.+.|.+....+. ++..+-..+++++.+..+..+ ++.+++.+...+ |.-.-...+.|+.++++.|+|++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 345566777777766665 699999999999999987666 999999998876 422566789999999999999999
Q ss_pred HHHHHHHHhCCCcccch
Q 001966 947 AKVLECMASFGWVSNSI 963 (989)
Q Consensus 947 ~~~~~~~~~~~~~p~~~ 963 (989)
++..+.+++. +|+..
T Consensus 94 ~~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHh--CCCCH
Confidence 9999999875 88643
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.18 E-value=0.18 Score=60.59 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=26.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 694 CKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDM 744 (989)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 744 (989)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4456666666554321 24566666666666666666666666554
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.17 E-value=3 Score=48.88 Aligned_cols=310 Identities=12% Similarity=-0.002 Sum_probs=164.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 001966 622 GLSKKLELREALGIFLELLEKGLVPDVD--TYNSLITSFCKICDVDKAFQLYEEMCEKGV-------EPNTLTYNVLIDG 692 (989)
Q Consensus 622 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 692 (989)
+....|+.++++.++...+..+-..+.. .-..+.-+....|..+++..++...+...- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 5667788888877776655422112222 233333445566666677777777664311 0112222333333
Q ss_pred HHhcCC-hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCC
Q 001966 693 FCKAGD-LTEPFQLFDEMTKRGVPLDGS----VYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNK 767 (989)
Q Consensus 693 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 767 (989)
+.-.|. -+++...+..+.... +.. .-.++...+.-.|+.+....++..+.+....+..-...++-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 333443 246667776666543 222 122334445567887777777777776433333333444455557788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001966 768 LQEAHQLLDAMLEEQVNPNHDT-Y---TTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFV 843 (989)
Q Consensus 768 ~~~A~~~~~~~~~~~~~~~~~~-~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 843 (989)
.+.+..+++.+... .++.. | .+++-+|+..|+.....++++.+... ...+......++-+....|+.+.+..
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888887753 23322 2 23455677888877666788888763 12233333344445556777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--C-------CHHHHHH
Q 001966 844 VFEEMLGKGIEPDNFTYYVMIDAHCKEGN-VMEALKLKDLIFDKRMPISAEAYKAIIKALCKR--E-------EYSEALR 913 (989)
Q Consensus 844 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-------~~~~A~~ 913 (989)
+++.+.+.+ +|....-..++-+....|+ ..+|+..+..+.. .++..+-..-+.++..- | ++.+-++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 776665532 3433322233333444444 3678888888874 23544433333333222 2 3555555
Q ss_pred HHHHHHHC-CCccCHHhHHHHHHHHHhcCC
Q 001966 914 LLNEMGES-GFRLGFASCRTVANDFLREGV 942 (989)
Q Consensus 914 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 942 (989)
.+.+.... ..+++......++......|.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 55555543 222333444455555554543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.92 E-value=0.018 Score=49.70 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001966 906 EEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASF 956 (989)
Q Consensus 906 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 956 (989)
+|.++|.++|+.+++.+.+ =+.+|...|..-.++|+...|++++.+++..
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 4555555555555444222 2444555555555555555555555555443
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.90 E-value=1.5e-05 Score=82.87 Aligned_cols=115 Identities=17% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 001966 190 LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVV 269 (989)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 269 (989)
+..|..|..+..+.+++.+|+..|- -..|+..|..+|.+.-+.|++++-+.++.-..+.. .+...=+.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHH
Confidence 3445566666666666655543211 22444555556666666666666665555444432 223333455
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001966 270 IGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFSAAKRLGDVRLVLS 322 (989)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 322 (989)
+-+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|.
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 555555555443222111 2344444444444444444444444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.87 E-value=0.099 Score=45.25 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCHH----HHHHHH---HHHHhcCCHHHHHHHHHHHHhCC
Q 001966 821 ATITYRSLLNGYNRMGNR------SEVFVVFEEMLGKGIEPDNF----TYYVMI---DAHCKEGNVMEALKLKDLIFDKR 887 (989)
Q Consensus 821 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~ 887 (989)
|..+|-..+....+.|+. ++..+.|++++.. +.|+.. .|..+- -.+...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555666 6666667766662 344321 122211 12234578899999999987664
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 001966 888 MPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 925 (989)
-.. +.+|...+.--.++|++..|.+++.+++..+|+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 443 7788888888889999999999999999988874
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.98 E-value=0.27 Score=41.72 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 888 MPISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 888 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
..|+..+-..+++++.+..+ ..+++.+++.+...+|.-.-..++.|+.++++.|+|++|++..+.+++. +|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 34556666666666655543 3456666666665554323445566666666666666666666666543 5543
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.91 E-value=4.9 Score=45.24 Aligned_cols=116 Identities=10% Similarity=-0.061 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001966 801 QNMEKAKQLFLEMQQRNLKPATI----TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEA 876 (989)
Q Consensus 801 g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 876 (989)
.+.+.|..++....+.. ..+.. .+..++......+...++...+.+... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777765432 12222 222333333334434555666665554 233433333333334456788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 001966 877 LKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGE 920 (989)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 920 (989)
...++.+..... .......++++++.+.|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 887777654322 2456677777777778888888888877764
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.82 E-value=0.2 Score=44.47 Aligned_cols=113 Identities=9% Similarity=0.016 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 001966 828 LLNGYNRMGNRSEVFVVFEEMLGK-GIEPDN-------FTYYVMIDAHCKEGNVMEALKLKDLIFDKR--MPISAEAYKA 897 (989)
Q Consensus 828 l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 897 (989)
-+..+...|.++.|+-+...++.. +.+|+. .++..+++++...|+|..|...|+++++.. ..-+......
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344455666666666666655441 122221 134445566666666666666666654321 1101100000
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 898 IIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 898 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
++ -....... .. .+ .+...-+.++.+|.+.|++++|+.+++.+
T Consensus 106 ~~----~~ss~p~s-------~~-~~-~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TG----NSASTPQS-------QC-LP-SEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------C-CC-CHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cc----ccCCCccc-------cc-cc-chHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 00 00000000 00 01 13456677888888888888888877654
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.76 E-value=0.16 Score=45.08 Aligned_cols=134 Identities=7% Similarity=-0.020 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHH-H
Q 001966 790 YTTLINQYCKVQNMEKAKQLFLEMQQR-NLKPA-------TITYRSLLNGYNRMGNRSEVFVVFEEMLGK-GIEPDNF-T 859 (989)
Q Consensus 790 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~-~ 859 (989)
+..-+..+...|.++.|+-+.+.+... +..|+ ..++..++.++...|++..|...|++++.. ..-|... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344466778899999999888876542 12333 236678889999999999999999998761 1223222 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 860 YYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 860 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
...+.. ...... ......+.+....++.||.+.|++++|+.+++.+-... -.+.+-..||..|.
T Consensus 103 ~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 103 RPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLYK 166 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHCC
T ss_pred cccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHhc
Confidence 111100 000000 01123366788889999999999999999998754332 25777788887663
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.46 Score=43.05 Aligned_cols=102 Identities=10% Similarity=0.051 Sum_probs=76.0
Q ss_pred HHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHhcCC
Q 001966 164 GYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTVIDAYFKVRN 243 (989)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 243 (989)
.-.+.|+++.|.++...+ .+...|..|.......|+++.|...|.+... +..+.-.|.-.|+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTC
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCC
Confidence 346789999999988776 3577899999999999999999999998866 5566666777788
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 001966 244 AEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSM 289 (989)
Q Consensus 244 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 289 (989)
.+.-.++-+....+| -+|.....+.-.|++++++++|.+.
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 777666655555543 2455555666778888888777553
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.71 E-value=1.6 Score=39.47 Aligned_cols=100 Identities=9% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001966 693 FCKAGDLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAH 772 (989)
Q Consensus 693 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 772 (989)
....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|..... +..+.-.|...|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34556666666665544 2456666666666666666666666665532 233344455555554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLE 812 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 812 (989)
.+-+.....| -++.....+...|++++++++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4333333322 123333344455666666665543
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.69 E-value=0.61 Score=40.16 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 855 PDNFTYYVMIDAHCKEGNV---MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 855 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
|...+-..+++++.++.+. .+++.+++.+...++.-..+....++-++.+.|++++|+++.+.+++..|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4444444455555554432 244455555554333223344444455555555555555555555555443
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.60 E-value=0.89 Score=39.13 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccc
Q 001966 889 PISAEAYKAIIKALCKREE---YSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNS 962 (989)
Q Consensus 889 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 962 (989)
.|+..+-..+++++.+..+ ..+++.+++.+....|.-.-...+.|+.++++.|+|++|++..+.+++. +|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4677777777777777664 4567777777777665434555677777888888888888888877764 6754
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.55 E-value=0.39 Score=40.72 Aligned_cols=72 Identities=17% Similarity=0.065 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 853 IEPDNFTYYVMIDAHCKEGNV---MEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 853 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
-.|...+-..+++++.+..+. .+++.+++.+.+.++.-..+.+..++-++.+.|++++|++..+.+++..|.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 345566666667777766553 457777777776554334566667777777777777777777777777765
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.85 E-value=2.6 Score=35.66 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=27.8
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 001966 240 KVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMV 290 (989)
Q Consensus 240 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 290 (989)
-.|..++..++..+.... .+..-||.+|--....-+.+-..+.++..-
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IG 66 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIG 66 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHG
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHh
Confidence 456677777777776654 455566666655544445555555555443
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.78 E-value=3.2 Score=44.86 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001966 662 CDVDKAFQLYEEMCEK-----GVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTK 711 (989)
Q Consensus 662 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 711 (989)
|+++.|++.+..+.+. ...........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566666665544431 2233445555666666666666666665555444
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.26 Score=56.56 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=30.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
+-+...|+++-|+++.++++...|. +..+|..|+.+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344455566666666665555555 5555666666666666666665555544
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.21 E-value=13 Score=41.72 Aligned_cols=330 Identities=13% Similarity=0.089 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 001966 511 FNSLIIGLCKAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCMAGEMQTAGRFFNEMLNSGLVPNDVIYTSIVDGYCK 590 (989)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (989)
|.....+ .+.|+...+..+...+...-+ .....|..+...+ .....++...++.+-. +.+.....-...+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHh
Confidence 4444443 356788777776655433211 1112333332222 1224555555444422 112222334445566667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 001966 591 EGNIAEAISKFRCMLARGILPEVQTYSVLINGLSKKLELREALGIFLELLEKGLVPDVDTYNSLITSFCKICDVDKAFQL 670 (989)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 670 (989)
.+++...+..+.. .+.+...-+....+....|+..+|......+-..|.. ....+. .+
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~----------------~l 142 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACD----------------KL 142 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHH----------------HH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHH----------------HH
Confidence 7777766654432 2345555566667777778777676665555444322 122233 34
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001966 671 YEEMCEKGVEPNTLTYNVLIDGFCKAGDLTEPFQLFDEMTKRGVPLDG-SVYNALLSGCCKEEKLEQALELFRDMLEKGL 749 (989)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 749 (989)
|....+.|......++.-+ ......|+...|..+...+ +++. .....++.....-.++ ...... ..+
T Consensus 143 ~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~---~~~~~~---~~~ 210 (618)
T 1qsa_A 143 FSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---LTFART---TGA 210 (618)
T ss_dssp HHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---HHHHHH---SCC
T ss_pred HHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH---HHHHhc---cCC
Confidence 4444444333222333333 4455667777776665533 2232 2223333333322222 221111 111
Q ss_pred CChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001966 750 ASTL---SFNTLIEFLCISNKLQEAHQLLDAMLEEQVNPNHDTY----TTLINQYCKVQNMEKAKQLFLEMQQRNLKPAT 822 (989)
Q Consensus 750 ~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 822 (989)
+.. .+..-+.-+. ..+.+.|...+......... +.... ..++......+...++...+...... .++.
T Consensus 211 -~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~ 285 (618)
T 1qsa_A 211 -TDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQST 285 (618)
T ss_dssp -CHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCH
T ss_pred -ChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCCh
Confidence 111 1111122223 34789999999988754322 33222 22333333445356777777776553 3444
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 823 ITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 823 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
....-.+....+.|+++.|...|+.|.... .......+=++.++...|+.++|..+|+++.+
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444445567799999999999876511 11333455567888899999999999999875
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.72 E-value=0.62 Score=53.46 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-cchhHHHHHhhhhcCCChhhHHHHHhhh
Q 001966 930 CRTVANDFLREGVMDYAAKVLECMASFGWVS-NSISLADIVKGENSGVDLDESKDLMKQT 988 (989)
Q Consensus 930 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 988 (989)
+..-+..+...|+++-|+++.++++.. -| +..+|+.|+..|...|+++.|.-.++-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344567788899999999999999875 68 5999999999999999999999877754
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.38 E-value=15 Score=39.63 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH----HcCC
Q 001966 697 GDLTEPFQLFDEMTK-----RGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLC----ISNK 767 (989)
Q Consensus 697 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 767 (989)
|++++|++.+-.+.+ .+..........++..|...|+++...+.+.-+.........+...+++.+. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888887766654 2344567778888999999999998888777665544333344444444332 2232
Q ss_pred HHHH--HHHHHHHHH--CC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHh
Q 001966 768 LQEA--HQLLDAMLE--EQ-VNPN---HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NLKPA---TITYRSLLNGYNR 834 (989)
Q Consensus 768 ~~~A--~~~~~~~~~--~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~ 834 (989)
.+.. ..+.+.+.. .| +.-. ......|+..|...|++.+|.+++..+... +..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2211 111111110 11 1111 123356777888888888888888887653 22222 2356666777888
Q ss_pred cCCHhHHHHHHHHHHh----CCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001966 835 MGNRSEVFVVFEEMLG----KGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFD 885 (989)
Q Consensus 835 ~g~~~~A~~~~~~~~~----~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 885 (989)
.+++..|..+++++.. ....|+.. .+..++..+...++|.+|.+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888887642 11122222 344456777778888888888877764
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.29 E-value=16 Score=38.27 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCChhhH--
Q 001966 683 TLTYNVLIDGFCKAGDLTEPFQLFDEMTKR-GVPL---DGSVYNALLSGCCKE-EKLEQALELFRDMLEKGLASTLSF-- 755 (989)
Q Consensus 683 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~-- 755 (989)
......|...|.+.|+.++..+++.....- +..+ .......+++.+... +..+.-.++..+.++-.......|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888899988888888766431 0011 223455666666553 344555555555554222122222
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 001966 756 ----NTLIEFLCISNKLQEAHQLLDAMLEEQVNPN-----HDTYTTLINQYCKVQNMEKAKQLFLEMQQR--NLKPATIT 824 (989)
Q Consensus 756 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~ 824 (989)
..++..|...|++.+|..++.++.+.-...| ...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567778888888888888777774311111 134555566677778888887777766542 22233322
Q ss_pred H----HHHHHHHH-hcCCHhHHHHHHHHHHh
Q 001966 825 Y----RSLLNGYN-RMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 825 ~----~~l~~~~~-~~g~~~~A~~~~~~~~~ 850 (989)
. ..-+..+. ..+++.+|...|-+..+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 22223345 56778887777776654
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.90 E-value=14 Score=37.06 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=41.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001966 472 NAIIYTNLVSTYFKKNKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKA---KRMDEARIYLVEMLRRGLKPNIHSFRA 548 (989)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (989)
++..+..+...|.+.|++.+|...|-.- -.-|...+..++.-+... |...++ +.. ...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf-~~R 193 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEF-FSR 193 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHH-HHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHH-HHH
Confidence 5566677777777777777777665311 101234444444433333 332222 111 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 001966 549 FILGYCMAGEMQTAGRFFNEML 570 (989)
Q Consensus 549 li~~~~~~g~~~~A~~~~~~~~ 570 (989)
.+-.|.-.|+...|..+|+...
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 2334455677777777776654
No 252
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.37 E-value=7.6 Score=32.94 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=79.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 001966 763 CISNKLQEAHQLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVF 842 (989)
Q Consensus 763 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 842 (989)
.-.|..++..++..+.... .+..-||-.|--....-+=+-..+.++.+=+ -.| ...+|+....+
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHH
Confidence 3456667777777766643 2333444444332222233333333333221 111 12345555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 001966 843 VVFEEMLGKGIEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESG 922 (989)
Q Consensus 843 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 922 (989)
..+-.+ ..+......-++.+..+|+.|+-.+++..++. +.+|+++....++.+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 544432 23444444455667777888888888777654 345678888888888888888888888888888777
Q ss_pred Cc
Q 001966 923 FR 924 (989)
Q Consensus 923 ~~ 924 (989)
.+
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.09 E-value=7.3 Score=48.17 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=91.2
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHH
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTT 233 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 233 (989)
++..-+.++++|...|++++|.+.|.++-. |+..+.... .... -...+..... ....-..-|.-
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~----~~~~~~~~~~-~~~~l~~YY~h 904 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR----EFQEIAEKYH-HQNLLSCYYLH 904 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH----HHHHHHHTTT-SCCSSHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc----cccccccccc-ccccHHHHHHH
Confidence 455567899999999999999999988742 221110000 0000 0111121000 01222344666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNV----ATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYVNLIYGFS 309 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 309 (989)
++..+-+.|.++.+.++-...++.....+. ..|..+.+++...|+|++|...+-.+..... -..+...++..+|
T Consensus 905 v~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lc 982 (1139)
T 4fhn_B 905 LSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLT 982 (1139)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHH
Confidence 777788888888888887777664322221 2578888888999999999999988876543 3566777888888
Q ss_pred hcCChhH
Q 001966 310 AAKRLGD 316 (989)
Q Consensus 310 ~~g~~~~ 316 (989)
..|..++
T Consensus 983 e~~~~~~ 989 (1139)
T 4fhn_B 983 KQGKINQ 989 (1139)
T ss_dssp HHCCHHH
T ss_pred hCCChhh
Confidence 7776544
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.88 E-value=29 Score=36.34 Aligned_cols=234 Identities=12% Similarity=-0.010 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---hhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 001966 718 GSVYNALLSGCCKEEKLEQALELFRDMLEKGL--AS---TLSFNTLIEFLCIS-NKLQEAHQLLDAMLEEQVNPNHDTY- 790 (989)
Q Consensus 718 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~- 790 (989)
......+...|.+.|+.++..+++.....--. +. ......+++.+... +..+.-.++..+.++-.-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45667788889999999988888877643211 11 22345566666553 4455555555555531101 11122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCCCCHH
Q 001966 791 -----TTLINQYCKVQNMEKAKQLFLEMQQRNLKPA-----TITYRSLLNGYNRMGNRSEVFVVFEEMLG--KGIEPDNF 858 (989)
Q Consensus 791 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~ 858 (989)
..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+.+... ..+.|++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578888899999999888888876311112 23455666778888999999988888765 22334443
Q ss_pred HHH----HHHHHHH-hcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHccCCHHHHHHHHH-HHHHCCCccCHH
Q 001966 859 TYY----VMIDAHC-KEGNVMEALKLKDLIFDK-RMPISA---EAYKAIIKALCKREEYSEALRLLN-EMGESGFRLGFA 928 (989)
Q Consensus 859 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~ 928 (989)
... .-+..+. ..++|.+|...|-++.+. ....++ .....++-+-...++..+-..+.. +....-..|+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 222 2236666 788999998888777532 111111 112222222223333323222222 211111233444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 001966 929 SCRTVANDFLREGVMDYAAKVLECM 953 (989)
Q Consensus 929 ~~~~l~~~~~~~g~~~~A~~~~~~~ 953 (989)
.+..+..+ +..+++.+...+++..
T Consensus 258 ~l~~L~~a-~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 258 AMKSVAEA-SHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHS
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 45555554 4556776666666554
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.28 E-value=5.1 Score=38.87 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 001966 867 HCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFR 924 (989)
Q Consensus 867 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 924 (989)
+.+.|.+++|++..+..++..|. |......++..+|-.|+++.|.+-++.+.+..|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44566666666666666666554 6666666666666666666666666666666544
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.03 E-value=28 Score=35.26 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCChhhHHHHHHHH
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL----NEIIRMGIEPNSRTYTSLIQGY 413 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~g~~~~~~~~~~li~~~ 413 (989)
++..-|.+++++++|.+++-.-.. .+.+.|....|.++- +.+.+.++++|......|+..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444556667777777666544332 133444444433332 3344455556655555555544
Q ss_pred HhcCChhH-HHHHHHHH----HhCC--CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 001966 414 CRMRKMVS-AFELLDEM----KKKN--LVPSVFTYGVIIDGLCHCGDLRQINAIL 461 (989)
Q Consensus 414 ~~~g~~~~-A~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (989)
.....-+- =..+.+++ .+.| ..-|......+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 43322110 01111111 1111 2234555666666777777777766665
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.94 E-value=2.3 Score=45.14 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 001966 864 IDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEM 918 (989)
Q Consensus 864 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 918 (989)
+..+...|++++|+..++.++...|- +...|..++.+|.+.|+..+|++.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444455555555555555444332 4445555555555555555555555443
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.37 E-value=2.1 Score=46.13 Aligned_cols=66 Identities=11% Similarity=0.004 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHH---HHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 001966 190 LFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVY---SYTTVIDAYFKVRNAEEGKRVFSEMGEK 257 (989)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 257 (989)
...+|.+++.|...+.++.|..+..+..- |....+|.. -+..+++.+.-++++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55678888888888888888888777632 111112211 2344567777888888888888887765
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.37 E-value=6.6 Score=48.52 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=36.3
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 76 AHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 76 ~~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...+..+..|-.|... ++.+.+.+|.++...|++++|..+|.++..
T Consensus 825 ~~~~~~~~~l~~~~~~-------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 825 FKQYNACMQLIGWLNS-------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HSCTTHHHHHHHHSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred hhhHHHHHHHhhhccC-------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 3556677777777643 566779999999999999999999998654
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.76 E-value=3.9 Score=43.31 Aligned_cols=67 Identities=9% Similarity=0.041 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 001966 723 ALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLIEFLCISNKLQEAHQLLDAMLE-----EQVNPNHDT 789 (989)
Q Consensus 723 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 789 (989)
.++..+...|++++++..+..++...|.+...+..++.++...|+..+|++.|++..+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556666666666666666666666666666666666666666666666665532 355665543
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.27 E-value=2.8 Score=40.65 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=54.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccchh
Q 001966 900 KALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMASFGWVSNSIS 964 (989)
Q Consensus 900 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 964 (989)
..+.+.|++++|+......++..|. |......|...++-.|+|+.|.+.++...+. .|+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhH
Confidence 3567899999999999999999998 9999999999999999999999999988664 676433
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.43 E-value=56 Score=33.05 Aligned_cols=81 Identities=11% Similarity=0.014 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001966 296 PDSYTYVNLIYGFSAAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLL 375 (989)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 375 (989)
-|...+..+...|.+.+++.+|..-|- .|-.+....+..++.-+.+.+... .++.+.-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH
Confidence 356666667777777777777776662 122223344444443333333211 12333333344
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 001966 376 KGFCKSGKMEKAREVLNEII 395 (989)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~~~ 395 (989)
. |.-.+++..|..+|+.+.
T Consensus 196 ~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 P-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHTTCHHHHHHHHHHHH
T ss_pred H-HHHhCCHHHHHHHHHHHH
Confidence 3 334567777777666554
No 263
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.67 E-value=43 Score=31.25 Aligned_cols=59 Identities=15% Similarity=-0.053 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 001966 891 SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMA 954 (989)
Q Consensus 891 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 954 (989)
+..+....+.++...|+. ++...+.++++ ++++.+....+.++...|. .++...+..+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 444444444555554442 23344444332 1244444444555555544 33444444443
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.55 E-value=22 Score=28.35 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLI 759 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 759 (989)
+.-+..+-++.+...+..|++.+..+.+.+|.+.+++.-|+.+++....+......+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44456667777777778888888888888888888888888888888776554444555443
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.46 E-value=62 Score=32.46 Aligned_cols=165 Identities=11% Similarity=0.083 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCChhhHHHHHHHH
Q 001966 338 ALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREV----LNEIIRMGIEPNSRTYTSLIQGY 413 (989)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~g~~~~~~~~~~li~~~ 413 (989)
++..-|.+++++++|.+++..-... +.+.|+...|.++ .+...+.+++++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~~---------------ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGALS---------------FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4555666777777777766554321 3344554444433 34444556666666666666555
Q ss_pred HhcCChh-HHHHHHHHH----HhCC--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 001966 414 CRMRKMV-SAFELLDEM----KKKN--LVPSVFTYGVIIDGLCHCGDLRQINAILGEMITRGLKPNAIIYTNLVSTYFKK 486 (989)
Q Consensus 414 ~~~g~~~-~A~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 486 (989)
.....-+ .=.++++++ .+.| ..-++.....+...|.+.|++.+|...|-. |-..+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHh
Confidence 4422111 112222222 2222 223677888889999999999998887742 1111334444444333333
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001966 487 ---NKLQEAGKLVERMRREGITPDVSCFNSLIIGLCKAKRMDEARIYLVEMLR 536 (989)
Q Consensus 487 ---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 536 (989)
|...++--.+ -.. +-.|.-.|+...|..+++...+
T Consensus 179 ~~~~~~~e~dlf~--------------~Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 179 VDDIEDSTVAEFF--------------SRL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TTCCCHHHHHHHH--------------HHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHH--------------HHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 4433322111 112 2234457888888888776653
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.68 E-value=15 Score=39.29 Aligned_cols=97 Identities=11% Similarity=-0.011 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 001966 754 SFNTLIEFLCISNKLQEAHQLLDAMLEEQ--VNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQR---NLKPATIT--YR 826 (989)
Q Consensus 754 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~~ 826 (989)
+...++..|.+.|++++|.+.+.++.... ...-...+...+..+...+++..|...+++.... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667777777777777777777776432 2223355566666666677777777666665431 21222211 11
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 827 SLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 827 ~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
.-+..+...+++.+|...|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223445566666666655544
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.62 E-value=9.9 Score=30.28 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCC--hHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q 001966 157 VFNMLIDGYRKIGL--LDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTTV 234 (989)
Q Consensus 157 ~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 234 (989)
.|++--..|...-+ .=+..+.+..+...+..|++....+.|++|.+-+++..|..+++.+.. .......+|..+
T Consensus 10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~----K~~~~~~iY~~~ 85 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD----KAGPHKEIYPYV 85 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCTTHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HhcCchhhHHHH
Confidence 44444444544333 235556666666678889999999999999999999999999988876 444444456655
Q ss_pred HH
Q 001966 235 ID 236 (989)
Q Consensus 235 ~~ 236 (989)
++
T Consensus 86 lq 87 (109)
T 1v54_E 86 IQ 87 (109)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.08 E-value=20 Score=28.44 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=40.8
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001966 313 RLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVLN 392 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (989)
+.++|..+-+-+...+. ...+--.-+..+...|++++|..+.+.+ +.||+..|-+|.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555544432 2222222234455666666666655444 3566666665543 34566666666665
Q ss_pred HHHHCC
Q 001966 393 EIIRMG 398 (989)
Q Consensus 393 ~~~~~g 398 (989)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555554
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.99 E-value=19 Score=28.52 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001966 312 KRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYNTLLKGFCKSGKMEKAREVL 391 (989)
Q Consensus 312 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (989)
.+.++|..+-+-+...+. ...+--.-+..+...|++++|..+.+.+ +.||+..|-+|.. .+.|-.+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345555555555554443 2222222334556677777776655443 3566666666553 3566666666666
Q ss_pred HHHHHCC
Q 001966 392 NEIIRMG 398 (989)
Q Consensus 392 ~~~~~~g 398 (989)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666555
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.79 E-value=18 Score=38.68 Aligned_cols=98 Identities=12% Similarity=-0.012 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHh---CCCCCCHHH--HH
Q 001966 789 TYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPA--TITYRSLLNGYNRMGNRSEVFVVFEEMLG---KGIEPDNFT--YY 861 (989)
Q Consensus 789 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~--~~ 861 (989)
+...++..|.+.|++++|.+.|.++......+. ...+..+++.+...+++..+...++++.. .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456778888888888888888888876432232 44677777778888888888888887755 222232221 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 001966 862 VMIDAHCKEGNVMEALKLKDLIFDK 886 (989)
Q Consensus 862 ~l~~~~~~~g~~~~A~~~~~~~~~~ 886 (989)
.-+..+...++|.+|.+.|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1223445567777777777666543
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.03 E-value=25 Score=32.39 Aligned_cols=53 Identities=21% Similarity=0.073 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001966 838 RSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPI 890 (989)
Q Consensus 838 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 890 (989)
..++..+|..|..+||--... -|...+..+...|++++|.++|+..++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555555544433 34444555555555555555555555554443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.61 E-value=44 Score=28.32 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001966 698 DLTEPFQLFDEMTKRGVPLDGSVYNALLSGCCKEEKLEQALELFRDMLEKGLASTLSFNTLI 759 (989)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 759 (989)
|.-+..+-++.+...++.|++.+..+.+.+|.+.+++.-|+.+++-...+.-+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34456666777777778888888888888888888888888888888876554455555544
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.32 E-value=87 Score=29.02 Aligned_cols=123 Identities=10% Similarity=0.057 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001966 786 NHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMID 865 (989)
Q Consensus 786 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 865 (989)
+...-...+.++.+.|.. ++...+.++.. .++..+-...+.++...|+. ++...+.++++ +|+...-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHH
Confidence 444444444455554442 23333333332 34555555555555555553 34444444443 455554444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 001966 866 AHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGES 921 (989)
Q Consensus 866 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 921 (989)
++...|.. ++...+.++++ .++..+-...+.++.+.|. +++...+.++++.
T Consensus 135 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d 185 (211)
T 3ltm_A 135 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET 185 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC
Confidence 55555553 34455555543 3466666666666666665 4556666666553
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.81 E-value=38 Score=26.87 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEML 849 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 849 (989)
+...|+|++|..+.+.+ ..||...|..|.. .+.|..+++..-+.++-
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 44555555555554433 2455555544433 24455555554444443
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.44 E-value=43 Score=28.35 Aligned_cols=77 Identities=16% Similarity=0.004 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHcCC--hHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHH
Q 001966 156 LVFNMLIDGYRKIGL--LDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTT 233 (989)
Q Consensus 156 ~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 233 (989)
+-|+.--..|...-+ .-+..+.+..+...+..|++......|++|.+-+++..|..+|+.... ...+...+|..
T Consensus 52 EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~----K~~~~~~iY~y 127 (152)
T 2y69_E 52 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD----KAGPHKEIYPY 127 (152)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCTTHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hcCCchhhHHH
Confidence 455555555555443 235555666666678889999999999999999999999999988876 44444555666
Q ss_pred HHH
Q 001966 234 VID 236 (989)
Q Consensus 234 l~~ 236 (989)
+++
T Consensus 128 ~lq 130 (152)
T 2y69_E 128 VIQ 130 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.55 E-value=37 Score=36.74 Aligned_cols=64 Identities=13% Similarity=-0.022 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHhhcCCCC-CCC---HHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 001966 155 GLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEF-VPS---LFSCNALLRDLLKGKKMELFWKVWAKMNK 218 (989)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (989)
..+++.+++.|...+.+++|..+..+...... .++ +..+..+.+...-+++|.+|.+.+..+.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46899999999999999999999998853211 112 22334456777889999999999999887
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.14 E-value=58 Score=29.98 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 001966 800 VQNMEKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 800 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 855 (989)
.+...++.++|..|...|+--. ..-|...+..+...|++++|.++|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677777777777665544 4456677777777777777777777777766666
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.25 E-value=36 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=23.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 001966 797 YCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLG 850 (989)
Q Consensus 797 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 850 (989)
+...|+|++|..+.+.+ ..||...|..|.. .+.|..+++..-+.++-.
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555544433 2455555544433 245555555555544443
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=60.79 E-value=1.1e+02 Score=30.56 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001966 840 EVFVVFEEMLGKGIEPDNF--TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNE 917 (989)
Q Consensus 840 ~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 917 (989)
...++.--+....+.|... ++..-+....+.+++..|..+.+++++.++.+. ..++|.+++..
T Consensus 188 R~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~ 252 (325)
T 3mv2_A 188 RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNK 252 (325)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHH
Confidence 3333333333333555443 344445777888888888888888888765322 24557777766
Q ss_pred HHHC
Q 001966 918 MGES 921 (989)
Q Consensus 918 ~~~~ 921 (989)
..+.
T Consensus 253 ce~~ 256 (325)
T 3mv2_A 253 ADSM 256 (325)
T ss_dssp HHTS
T ss_pred HhcC
Confidence 5544
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.83 E-value=53 Score=28.72 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 841 VFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 841 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
+.++|..|..+||-.... -|...+..+...|++++|.++|+..++.+-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 444444444444443333 2333344444444444444444444444333
No 281
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.87 E-value=30 Score=39.03 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=17.9
Q ss_pred HHHHHHHHcCChHHHHHHHHhhc
Q 001966 160 MLIDGYRKIGLLDEAVDLFLCDT 182 (989)
Q Consensus 160 ~l~~~~~~~g~~~~A~~~~~~~~ 182 (989)
....-+...|++++|+.+|+.+.
T Consensus 448 ~aA~~ae~~G~~~dAi~LY~La~ 470 (661)
T 2qx5_A 448 QAARRADEDGRIYDSILLYQLAE 470 (661)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHhc
Confidence 34456778999999999998774
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.81 E-value=44 Score=31.86 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=12.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCC
Q 001966 341 DGFVKQGDVEEAFRVKDELVASGNQ 365 (989)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~g~~ 365 (989)
...++.|+.+....+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3344555555555555554444433
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.25 E-value=70 Score=28.38 Aligned_cols=51 Identities=10% Similarity=0.009 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001966 841 VFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPIS 891 (989)
Q Consensus 841 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 891 (989)
+.++|..|..+||-.... -|...+..+...|++.+|.++|+..++.+-.|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 445555555555544433 333444555555555555555555555544433
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.14 E-value=1.1e+02 Score=26.83 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 001966 874 MEALKLKDLIFDKRMPI-SAEAYKAIIKALCKREEYSEALRLLNEMGESGFRL 925 (989)
Q Consensus 874 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 925 (989)
+++.++|+.+...++.. -+..|...+..+...|++++|..+|+..++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33667777776664432 34556666666777777777777777777665554
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.37 E-value=36 Score=32.40 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.0
Q ss_pred HHhcCCh
Q 001966 378 FCKSGKM 384 (989)
Q Consensus 378 ~~~~g~~ 384 (989)
.+..|+.
T Consensus 116 A~~~~~~ 122 (240)
T 3eu9_A 116 AAQFGHT 122 (240)
T ss_dssp HHHTTCH
T ss_pred HHHcCHH
Confidence 3444443
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=45.19 E-value=3.8e+02 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 546 FRAFILGYCMAGEMQTAGRFFNEML 570 (989)
Q Consensus 546 ~~~li~~~~~~g~~~~A~~~~~~~~ 570 (989)
...+|--+.+.|++++|.++.++..
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 4456666677777777777765543
No 287
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.30 E-value=2.6e+02 Score=27.99 Aligned_cols=33 Identities=6% Similarity=-0.080 Sum_probs=22.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 001966 265 TYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPD 297 (989)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 297 (989)
+..+-+....|.+++..|..+-+++.+.+..++
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 444555666778888888888888887765433
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.16 E-value=1.7e+02 Score=25.92 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 001966 804 EKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF 858 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 858 (989)
+++.++|..|...|+--. ...|...+..+...|++.+|.++|+..++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 346677888887776555 4467777777888888888888888888876677443
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.13 E-value=76 Score=31.00 Aligned_cols=10 Identities=0% Similarity=-0.051 Sum_probs=4.6
Q ss_pred HHHHhcCChh
Q 001966 236 DAYFKVRNAE 245 (989)
Q Consensus 236 ~~~~~~g~~~ 245 (989)
...++.|+.+
T Consensus 10 ~~A~~~g~~~ 19 (285)
T 1wdy_A 10 IKAVQNEDVD 19 (285)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHcCCHH
Confidence 3344455543
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.92 E-value=66 Score=30.51 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=8.4
Q ss_pred HHHHHhcCChHHHHHHHH
Q 001966 375 LKGFCKSGKMEKAREVLN 392 (989)
Q Consensus 375 i~~~~~~g~~~~A~~~~~ 392 (989)
+...+..|+.+-...+++
T Consensus 83 l~~A~~~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLD 100 (241)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333445555554444443
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.39 E-value=2.1e+02 Score=29.36 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 441 YGVIIDGLCHCGDLRQINAILGEMI 465 (989)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~~~ 465 (989)
...+|.-|...|+.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4566777777788888888777754
No 292
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.03 E-value=72 Score=23.71 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHHHHH
Q 001966 104 SLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLID 163 (989)
Q Consensus 104 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 163 (989)
..+|..|...|.+++|...|-+++. --..|.+++..+..+. .+.+|..|+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~-Vc~qP~~LL~i~q~tl--------P~~vf~~Li~ 71 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIA-VCGQPQQLLQVLQQTL--------PPPVFQMLLT 71 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-TCSSCHHHHHHHHHHS--------CHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC--------CHHHHHHHHH
Confidence 4577888889999999999999998 5566666666655554 3457777653
No 293
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=38.12 E-value=1.6e+02 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=15.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001966 374 LLKGFCKSGKMEKAREVLNEIIRMGIEPNS 403 (989)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 403 (989)
.+...+..|+.+.-.++.+.+++.|..+|.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 344444555555445555555556555443
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.53 E-value=1.3e+02 Score=35.94 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHHcCChHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCcCHHHHHH
Q 001966 154 KGLVFNMLIDGYRKIGLLDEAVDLFLCDTGCEFVPSLFSCNALLRDLLKGKKMELFWKVWAKMNKMNAGGFEFDVYSYTT 233 (989)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 233 (989)
++..-+.++++|...|++++|...|.++-. |+..+....+. ......+... .+ .......-|.-
T Consensus 839 t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~----------~~~~~~ll~~-~e----~~~~~~~YY~h 902 (950)
T 4gq2_M 839 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV----------LREFQEIAEK-YH----HQNLLSCYYLH 902 (950)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------GHHHHHHHHH-TT----TCSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------hhhhhhccCc-cc----ccchhHHHHHH
Confidence 455567899999999999999999998742 22211000000 0000001100 00 11122235666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHccC
Q 001966 234 VIDAYFKVRNAEEGKRVFSEMGEKGCRPNV----ATYNVVIGGLCRVG 277 (989)
Q Consensus 234 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 277 (989)
++..+-+.+.++.+.++-+..++.--..+. ..|+.+.++.|..|
T Consensus 903 V~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 903 LSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 667777777777777777777754222222 35666666666544
No 295
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.46 E-value=1.1e+02 Score=33.10 Aligned_cols=80 Identities=5% Similarity=-0.093 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHH
Q 001966 859 TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFL 938 (989)
Q Consensus 859 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 938 (989)
....|++...-...++.|..+|.++....|. +...|+.|+-.....|+.-+|.-.|-+.+... .|.+.+..+|...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Confidence 4455677777778899999999999988766 77889999988888999999999988887664 457888888877665
Q ss_pred hc
Q 001966 939 RE 940 (989)
Q Consensus 939 ~~ 940 (989)
+.
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.42 E-value=1.1e+02 Score=30.02 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=7.5
Q ss_pred HHHccCCHHHHHHHHHH
Q 001966 482 TYFKKNKLQEAGKLVER 498 (989)
Q Consensus 482 ~~~~~g~~~~A~~~~~~ 498 (989)
..+..|..+-+.-+++.
T Consensus 167 ~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHc
Confidence 33445555444444433
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.29 E-value=37 Score=33.00 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=12.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCC
Q 001966 238 YFKVRNAEEGKRVFSEMGEKGCRPN 262 (989)
Q Consensus 238 ~~~~g~~~~A~~~~~~~~~~~~~~~ 262 (989)
.++.|+.+....+++.+.+.|...+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445555555555554444444333
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.08 E-value=56 Score=30.97 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=50.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcC
Q 001966 238 YFKVRNAEEGKRVFSEMGEKGCRPNVA--TYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYT---YVNLIYGFSAAK 312 (989)
Q Consensus 238 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g 312 (989)
.++.|+++-...++ +.|..++.. .-.+.+...++.|+.+-.. .+.+.|..++... -.+.+...+..|
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 35566655444433 444443322 1223445556667765443 3444444332111 112333444556
Q ss_pred ChhHHHHHHHHHHHCCCCcCHH--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 001966 313 RLGDVRLVLSELIGKGLKLDTV--AYYALIDGFVKQGDVEEAFRVKDELVASGNQID 367 (989)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 367 (989)
+.+-+ +.+.+.|..++.. ...+.+...+..|+.+ +++.+.+.|..++
T Consensus 88 ~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 88 HLSMV----VQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVD 136 (240)
T ss_dssp CHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred CHHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCcc
Confidence 65433 3444455444422 1113344455667755 4444455555443
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.79 E-value=3.2e+02 Score=26.40 Aligned_cols=134 Identities=12% Similarity=0.019 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 001966 805 KAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNFTYYVMIDAHCKEG-NVMEALKLKDLI 883 (989)
Q Consensus 805 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 883 (989)
.+...+..+.. .++..+-...+.++...|+. ++...+.+++. .|+...-...+.++...| ...++...+..+
T Consensus 128 ~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~ 200 (280)
T 1oyz_A 128 KIVEQSQITAF---DKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEM 200 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 44444444432 35555555555666665552 34455555553 344443333344444443 234555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001966 884 FDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRTVANDFLREGVMDYAAKVLECMAS 955 (989)
Q Consensus 884 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 955 (989)
++ .++..+....+.++.+.|+ +++...+.++++.. + +....+.++.+.|. .++...+..+.+
T Consensus 201 l~---d~~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~d~---~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 201 LQ---DKNEEVRIEAIIGLSYRKD-KRVLSVLCDELKKN---T--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp TT---CSCHHHHHHHHHHHHHTTC-GGGHHHHHHHHTSS---S--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred hc---CCCHHHHHHHHHHHHHhCC-HhhHHHHHHHhcCc---c--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 43 3466666666777777774 34555555555431 2 22334445555565 355566665554
No 300
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.63 E-value=2.5e+02 Score=28.79 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 546 FRAFILGYCMAGEMQTAGRFFNEML 570 (989)
Q Consensus 546 ~~~li~~~~~~g~~~~A~~~~~~~~ 570 (989)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4555666666677777766666653
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.18 E-value=1.6e+02 Score=28.84 Aligned_cols=40 Identities=8% Similarity=-0.069 Sum_probs=16.6
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHH
Q 001966 239 FKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEA 282 (989)
Q Consensus 239 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 282 (989)
++.|+.+-+..+ .+.|..++...-.+.+...++.|+.+-+
T Consensus 39 ~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 39 IADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp HHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred HHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 345555433333 3334333332222334444555655433
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.28 E-value=95 Score=30.25 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.0
Q ss_pred HHHHHHHHHcCC
Q 001966 528 RIYLVEMLRRGL 539 (989)
Q Consensus 528 ~~~~~~~~~~~~ 539 (989)
.++++.+.+.|.
T Consensus 199 ~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 199 EAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 334444444443
No 303
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.75 E-value=3e+02 Score=24.84 Aligned_cols=186 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 001966 773 QLLDAMLEEQVNPNHDTYTTLINQYCKVQNMEKAKQLFLEMQQRNLKPATITYRSLLNGYNRMGNRSEVFVVFEEMLGKG 852 (989)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 852 (989)
.....+++.=-.++...-...+..+.+.|. ..+...+.++.. .++...-...+.++...|.. ++...+.+++.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~-- 86 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK-- 86 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT--
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc--
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHhHHH
Q 001966 853 IEPDNFTYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKALCKREEYSEALRLLNEMGESGFRLGFASCRT 932 (989)
Q Consensus 853 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 932 (989)
.|+...-...+.++.+.|+.+....+.+.+ ..++..+-...+.++.+.|+ .++...+.++++.. ++.+...
T Consensus 87 -d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~---~~~vr~~ 157 (201)
T 3ltj_A 87 -DEDGWVRQSAAVALGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGD-ERAVEPLIKALKDE---DGWVRQS 157 (201)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTC-GGGHHHHHHHTTCS---SHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcCC---CHHHHHH
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcccchhHHHHHhhhhcCCCh
Q 001966 933 VANDFLREGVMDYAAKVLECMASFGWVSNSISLADIVKGENSGVDL 978 (989)
Q Consensus 933 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 978 (989)
.+.++...|. .++...+..+.+ .++...-......+...+..
T Consensus 158 A~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 158 AADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhh
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.24 E-value=2e+02 Score=28.74 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 441 YGVIIDGLCHCGDLRQINAILGEMI 465 (989)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~~~ 465 (989)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456777777777777777777753
No 305
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.24 E-value=1.8e+02 Score=31.47 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001966 824 TYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMPISAEAYKAIIKAL 902 (989)
Q Consensus 824 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 902 (989)
....|+....-...++.|...|.++.. +.|+.. .|+.|+......|+.-+|+=+|-+.+... .|-+.+...+...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHH
Confidence 445566666667789999999999999 899876 89999988888999999998888888764 56888888887655
Q ss_pred Hc
Q 001966 903 CK 904 (989)
Q Consensus 903 ~~ 904 (989)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.00 E-value=1.2e+02 Score=28.49 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001966 839 SEVFVVFEEMLGKGIEPDNF-TYYVMIDAHCKEGNVMEALKLKDLIFDKRMP 889 (989)
Q Consensus 839 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 889 (989)
+++..+|..|..+||--... -|...+..+...|++.+|.++|+..++.+-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34455555555555544433 3334445555555555555555555554433
No 307
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.33 E-value=2.7e+02 Score=28.00 Aligned_cols=12 Identities=0% Similarity=-0.011 Sum_probs=5.4
Q ss_pred HHhcCChhHHHH
Q 001966 238 YFKVRNAEEGKR 249 (989)
Q Consensus 238 ~~~~g~~~~A~~ 249 (989)
-++.|+.+-+..
T Consensus 32 Av~~g~~~~V~~ 43 (337)
T 4g8k_A 32 AVQNEDVDLVQQ 43 (337)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 344555544333
No 308
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.14 E-value=2.5e+02 Score=26.65 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 001966 794 INQYCKVQNMEKAKQLFLEMQQ 815 (989)
Q Consensus 794 ~~~~~~~g~~~~A~~~~~~~~~ 815 (989)
++.+....++++|++++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666666666666665543
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.07 E-value=33 Score=33.35 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=8.2
Q ss_pred ccCChhHHHHHHHHHHHCC
Q 001966 275 RVGFVDEAVELKNSMVEKG 293 (989)
Q Consensus 275 ~~g~~~~A~~~~~~m~~~g 293 (989)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3444444444444444433
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.36 E-value=3.6e+02 Score=24.67 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=20.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001966 520 KAKRMDEARIYLVEMLRRGLKPNIHSFRAFILGYCM 555 (989)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 555 (989)
+-.+.+.|+-.+-+|++.| .|....-..++.+...
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 4567777777777777777 5544444444444333
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.85 E-value=2.4e+02 Score=23.69 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 001966 582 TSIVDGYCKEGNIAEAISKFRCM 604 (989)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~ 604 (989)
..++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44455555555555555555554
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.75 E-value=1e+02 Score=28.89 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 001966 804 EKAKQLFLEMQQRNLKPA-TITYRSLLNGYNRMGNRSEVFVVFEEMLGKGIEP 855 (989)
Q Consensus 804 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 855 (989)
+++.++|..|...|+--. ...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466677777777665544 3456667777777777777777777777755566
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.87 E-value=3.9e+02 Score=31.93 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=36.1
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCChHhHHHHHHHHhcCCCcchHHHHHHHHHH
Q 001966 76 AHNLTRLLSFFHWSERQMGTCQNDLKVLSLLFVVLCNCKMYGPASAIVKRMIS 128 (989)
Q Consensus 76 ~~~~~~~l~ff~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~ 128 (989)
...++.+..|-.|... ++.+.+.+|+++...|.+++|..+|.++..
T Consensus 823 ~~~~~~a~eL~~~~~~-------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 823 FKQYNACMQLIGWLNS-------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp TTCHHHHHHHGGGCCS-------SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred hcHHHHHHHHHhhcCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4567777776666643 556678999999999999999999998653
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.28 E-value=4e+02 Score=25.28 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=15.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001966 507 DVSCFNSLIIGLCKAKRMDEARIYLVEM 534 (989)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 534 (989)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444555555666666666655443
No 315
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=23.98 E-value=1.2e+02 Score=23.26 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=8.6
Q ss_pred HhcCCHHHHHHHHHHHH
Q 001966 868 CKEGNVMEALKLKDLIF 884 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~ 884 (989)
.+.|++++|+.+|.+.+
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34555555555554443
No 316
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.32 E-value=4.8e+02 Score=24.68 Aligned_cols=16 Identities=19% Similarity=-0.041 Sum_probs=8.9
Q ss_pred ccCCHHHHHHHHHHHH
Q 001966 904 KREEYSEALRLLNEMG 919 (989)
Q Consensus 904 ~~g~~~~A~~~~~~~~ 919 (989)
-.|+.++|..+.+++.
T Consensus 185 il~~~~~A~~lAk~af 200 (234)
T 2br9_A 185 ILNSPDRACRLAKAAF 200 (234)
T ss_dssp TSCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4566666665555543
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.73 E-value=4.2e+02 Score=24.17 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=18.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001966 520 KAKRMDEARIYLVEMLRRGLKPNIHSFRAFIL 551 (989)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 551 (989)
+-.+.+.|+-.+-+|++.|-.|....-..++.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~ 50 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAI 50 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34666667777777766665554443333333
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.66 E-value=2.8e+02 Score=25.71 Aligned_cols=187 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHH
Q 001966 232 TTVIDAYFKVRNAEEGKRVFSEMGEKGCRPNVATYNVVIGGLCRVGFVDEAVELKNSMVEKGLVPDSYTYV--NLIYGFS 309 (989)
Q Consensus 232 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~ 309 (989)
+..+...++.|+.+....+++.-...-..++..-++.+..+..... .++++.+.+.|..++..... +.+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHH
Q 001966 310 AAKRLGDVRLVLSELIGKGLKLDTVAYYALIDGFVKQGDVEEAFRVKDELVASGNQIDLVIYN--TLLKGFCKSGKMEKA 387 (989)
Q Consensus 310 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A 387 (989)
..|+.+-+..+++. ...+........+.+...+..|+.+ +.+.+.+.|..++..... +.+...+..|+.+
T Consensus 82 ~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-- 153 (231)
T 3aji_A 82 SAGXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK-- 153 (231)
T ss_dssp HHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH--
T ss_pred HcCHHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH--
Q ss_pred HHHHHHHHHCCCCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 001966 388 REVLNEIIRMGIEPNSRTYT--SLIQGYCRMRKMVSAFELLDEMKKKNLVPS 437 (989)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 437 (989)
+++.+.+.|..++..... +.+...+..|+ .++.+.+.+.|..++
T Consensus 154 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 154 --MVHILLFYKASTNIQDTEGNTPLHLACDEER----VEEAKFLVTQGASIY 199 (231)
T ss_dssp --HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCSC
T ss_pred --HHHHHHhcCCCccccCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCCC
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.44 E-value=1.8e+02 Score=28.99 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=13.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 001966 478 NLVSTYFKKNKLQEAGKLVERMR 500 (989)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~ 500 (989)
.++.-|...|+.++|.+.++++.
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC
Confidence 44555555566666666665554
No 320
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=22.16 E-value=1.3e+02 Score=22.95 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=8.4
Q ss_pred HhcCCHHHHHHHHHHHH
Q 001966 868 CKEGNVMEALKLKDLIF 884 (989)
Q Consensus 868 ~~~g~~~~A~~~~~~~~ 884 (989)
-+.|++++|+.+|.+.+
T Consensus 22 D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34455555555554443
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.23 E-value=2.1e+02 Score=25.00 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 001966 582 TSIVDGYCKEGNIAEAISKFRCM 604 (989)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~ 604 (989)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 44555555555555555555554
No 322
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.07 E-value=78 Score=22.33 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 001966 244 AEEGKRVFSEMGEKGCRPNVATYNVVIGGL 273 (989)
Q Consensus 244 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (989)
.++|.+.|-+|++..-.+...+|...++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776654445566676666665
No 323
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.51 E-value=3.9e+02 Score=27.77 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=30.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCC--------------CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001966 829 LNGYNRMGNRSEVFVVFEEMLGKGI--------------EPDNF--TYYVMIDAHCKEGNVMEALKLKDLIF 884 (989)
Q Consensus 829 ~~~~~~~g~~~~A~~~~~~~~~~g~--------------~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 884 (989)
+.+.....+.++|.++++++...-. ..+.. ....++..+...|+.++|..+++++.
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445556677777777776533100 00111 22233466666777777777776665
No 324
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.12 E-value=1.1e+02 Score=24.03 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHcCCCChhHHHHhHhhhhhccccccccchhHHHHHH
Q 001966 104 SLLFVVLCNCKMYGPASAIVKRMISDGNNSGFEILSAVDGCFRESDEFVCKGLVFNMLID 163 (989)
Q Consensus 104 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 163 (989)
..+|..|...|.++.|...|-+++. --..|.+++..+..+. .+.+|..|+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~-Vc~qP~~LL~i~q~Tl--------P~~Vf~~Li~ 74 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIA-VCGQPQQLLQVLQQTL--------PPPVFQMLLT 74 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HHSCHHHHHHHHHHHS--------CCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC--------CHHHHHHHHH
Confidence 3467788888889999998888887 4455666665555543 3457777765
Done!