Query 001968
Match_columns 989
No_of_seqs 278 out of 1549
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 13:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2021 Nuclear mRNA export fa 100.0 5E-128 1E-132 1033.8 85.9 958 1-980 2-978 (980)
2 COG5101 CRM1 Importin beta-rel 100.0 3.5E-66 7.6E-71 545.4 69.1 905 4-983 16-1033(1053)
3 KOG2022 Nuclear transport rece 100.0 3.9E-64 8.4E-69 552.8 77.5 902 2-984 7-980 (982)
4 KOG2081 Nuclear transport regu 100.0 8.5E-46 1.8E-50 394.0 43.9 542 24-635 2-557 (559)
5 KOG2171 Karyopherin (importin) 100.0 2.2E-43 4.8E-48 403.8 61.8 774 3-937 5-842 (1075)
6 KOG2020 Nuclear transport rece 100.0 9.7E-43 2.1E-47 408.0 58.8 900 3-980 11-1009(1041)
7 KOG2023 Nuclear transport rece 100.0 1.5E-42 3.3E-47 370.1 45.8 680 3-871 14-736 (885)
8 KOG1241 Karyopherin (importin) 100.0 2E-32 4.3E-37 298.4 60.3 732 5-872 4-816 (859)
9 COG5215 KAP95 Karyopherin (imp 100.0 2.2E-24 4.8E-29 227.6 60.3 598 18-742 17-648 (858)
10 KOG1991 Nuclear transport rece 100.0 9.2E-25 2E-29 246.4 56.1 570 3-674 5-631 (1010)
11 KOG1992 Nuclear export recepto 99.9 5.1E-16 1.1E-20 172.2 65.3 738 1-870 4-796 (960)
12 KOG1410 Nuclear transport rece 99.9 2.4E-13 5.2E-18 147.2 72.4 789 3-869 6-939 (1082)
13 PF08389 Xpo1: Exportin 1-like 99.8 1.5E-20 3.2E-25 181.7 14.9 147 107-260 1-148 (148)
14 COG5656 SXM1 Importin, protein 99.8 2.4E-13 5.2E-18 149.4 58.7 572 4-674 5-630 (970)
15 PF08767 CRM1_C: CRM1 C termin 99.8 1.7E-18 3.8E-23 185.7 17.0 227 728-983 66-319 (319)
16 KOG2274 Predicted importin 9 [ 99.8 5.8E-13 1.3E-17 149.9 57.8 143 4-163 6-160 (1005)
17 KOG1993 Nuclear transport rece 99.7 2.1E-12 4.6E-17 143.2 52.2 170 4-200 2-181 (978)
18 KOG2171 Karyopherin (importin) 99.7 6E-11 1.3E-15 138.6 55.5 599 192-871 37-717 (1075)
19 COG5657 CSE1 CAS/CSE protein i 99.3 1.7E-06 3.7E-11 99.3 50.1 132 18-162 16-154 (947)
20 KOG1824 TATA-binding protein-i 99.1 2.4E-06 5.1E-11 97.8 44.0 576 51-742 17-620 (1233)
21 KOG2023 Nuclear transport rece 99.0 1E-05 2.2E-10 89.5 40.3 449 331-870 171-694 (885)
22 PF03810 IBN_N: Importin-beta 98.9 3.8E-09 8.3E-14 88.5 8.5 66 26-91 1-76 (77)
23 KOG1241 Karyopherin (importin) 98.9 0.0001 2.3E-09 83.2 44.1 289 454-777 419-729 (859)
24 KOG1824 TATA-binding protein-i 98.3 0.017 3.6E-07 67.6 49.1 457 55-613 149-639 (1233)
25 KOG0915 Uncharacterized conser 98.3 0.00037 8.1E-09 84.6 27.7 184 374-583 991-1183(1702)
26 COG5215 KAP95 Karyopherin (imp 97.8 0.11 2.4E-06 57.6 44.6 358 458-871 424-813 (858)
27 PF01602 Adaptin_N: Adaptin N 97.7 0.21 4.5E-06 59.3 36.9 120 18-158 54-179 (526)
28 KOG1242 Protein containing ada 97.6 0.073 1.6E-06 60.2 29.5 240 454-740 266-542 (569)
29 KOG1991 Nuclear transport rece 97.6 0.33 7.2E-06 57.8 39.7 224 20-269 282-536 (1010)
30 PF08506 Cse1: Cse1; InterPro 97.5 0.0097 2.1E-07 65.6 21.1 173 376-555 182-370 (370)
31 KOG0212 Uncharacterized conser 97.4 0.3 6.5E-06 54.4 29.4 333 461-866 62-405 (675)
32 KOG0915 Uncharacterized conser 97.2 0.058 1.3E-06 66.6 23.7 133 433-582 955-1091(1702)
33 KOG1242 Protein containing ada 97.0 0.066 1.4E-06 60.5 20.2 239 440-731 214-454 (569)
34 PF01602 Adaptin_N: Adaptin N 96.9 1.6 3.5E-05 51.7 37.6 340 425-868 66-407 (526)
35 PF03378 CAS_CSE1: CAS/CSE pro 96.7 0.23 5E-06 56.1 21.7 293 525-867 22-324 (435)
36 PF10508 Proteasom_PSMB: Prote 96.6 0.5 1.1E-05 55.1 25.0 357 455-889 51-441 (503)
37 PF12755 Vac14_Fab1_bd: Vacuol 96.6 0.006 1.3E-07 52.8 6.4 58 524-583 22-79 (97)
38 KOG0213 Splicing factor 3b, su 96.5 2.4 5.3E-05 49.0 46.9 157 415-584 730-895 (1172)
39 PF03378 CAS_CSE1: CAS/CSE pro 96.1 0.64 1.4E-05 52.6 20.7 253 563-869 17-274 (435)
40 PF10508 Proteasom_PSMB: Prote 96.0 4 8.6E-05 47.7 27.6 360 423-839 60-439 (503)
41 KOG1059 Vesicle coat complex A 95.0 9.3 0.0002 44.5 36.0 103 458-575 123-225 (877)
42 PF12755 Vac14_Fab1_bd: Vacuol 94.9 0.056 1.2E-06 46.8 5.6 92 459-559 3-95 (97)
43 PTZ00429 beta-adaptin; Provisi 94.8 13 0.00029 45.2 43.7 199 18-265 80-285 (746)
44 PF02985 HEAT: HEAT repeat; I 94.5 0.024 5.3E-07 37.3 1.9 30 531-562 2-31 (31)
45 KOG1059 Vesicle coat complex A 94.4 13 0.00029 43.3 29.7 223 75-363 138-365 (877)
46 COG5181 HSH155 U2 snRNP splice 94.3 12 0.00027 42.6 24.3 99 482-584 599-700 (975)
47 KOG2956 CLIP-associating prote 93.8 1 2.2E-05 49.4 13.1 174 512-735 316-492 (516)
48 PF05804 KAP: Kinesin-associat 93.4 23 0.0005 42.7 34.1 211 2-264 123-359 (708)
49 PF12348 CLASP_N: CLASP N term 93.2 2.3 5E-05 43.9 14.8 158 529-727 53-212 (228)
50 KOG1248 Uncharacterized conser 92.8 32 0.0007 42.8 55.5 77 183-267 86-169 (1176)
51 PRK09687 putative lyase; Provi 92.3 13 0.00027 39.7 18.9 193 5-263 26-219 (280)
52 PLN03200 cellulose synthase-in 92.1 59 0.0013 44.1 57.9 224 3-266 14-262 (2102)
53 COG5181 HSH155 U2 snRNP splice 91.9 28 0.0006 39.9 25.2 172 524-743 599-775 (975)
54 PTZ00429 beta-adaptin; Provisi 91.9 38 0.00082 41.4 31.8 131 417-562 156-287 (746)
55 KOG4541 Nuclear transport rece 91.5 29 0.00062 39.3 27.0 115 545-671 311-426 (748)
56 KOG0166 Karyopherin (importin) 90.7 14 0.0003 42.1 17.6 257 418-721 127-393 (514)
57 PF12348 CLASP_N: CLASP N term 90.4 5.2 0.00011 41.2 13.6 138 707-871 68-210 (228)
58 PLN03200 cellulose synthase-in 89.7 95 0.0021 42.3 29.7 130 107-266 459-594 (2102)
59 KOG1062 Vesicle coat complex A 89.6 52 0.0011 39.2 24.8 169 435-630 103-277 (866)
60 KOG1943 Beta-tubulin folding c 89.2 66 0.0014 39.8 34.0 118 456-577 442-591 (1133)
61 PF12460 MMS19_C: RNAPII trans 88.5 51 0.0011 37.6 23.7 183 524-740 224-413 (415)
62 PF10274 ParcG: Parkin co-regu 88.4 2.3 4.9E-05 41.4 8.2 93 527-632 36-129 (183)
63 PF13513 HEAT_EZ: HEAT-like re 88.3 0.4 8.7E-06 36.6 2.5 45 512-558 10-55 (55)
64 smart00802 UME Domain in UVSB 87.9 5.1 0.00011 35.4 9.4 69 709-777 32-102 (107)
65 KOG1061 Vesicle coat complex A 87.9 67 0.0014 38.2 22.2 135 417-564 137-272 (734)
66 smart00802 UME Domain in UVSB 87.8 4.1 8.9E-05 36.0 8.8 75 547-636 31-105 (107)
67 PF08064 UME: UME (NUC010) dom 87.7 3.3 7.1E-05 36.7 8.2 79 544-637 28-106 (107)
68 PF13513 HEAT_EZ: HEAT-like re 87.6 0.35 7.6E-06 36.9 1.8 39 545-583 1-39 (55)
69 KOG1248 Uncharacterized conser 87.5 88 0.0019 39.2 62.8 173 662-871 718-902 (1176)
70 KOG0166 Karyopherin (importin) 87.1 16 0.00035 41.6 15.0 258 542-866 121-392 (514)
71 cd00020 ARM Armadillo/beta-cat 85.9 2.4 5.2E-05 38.2 6.9 95 454-560 19-120 (120)
72 KOG1967 DNA repair/transcripti 85.3 99 0.0021 37.7 20.5 100 517-630 31-132 (1030)
73 PF02985 HEAT: HEAT repeat; I 83.8 2.2 4.7E-05 28.0 3.9 29 235-265 1-29 (31)
74 PF08506 Cse1: Cse1; InterPro 83.7 14 0.0003 41.0 12.6 240 545-854 110-362 (370)
75 KOG2022 Nuclear transport rece 82.4 1.3E+02 0.0027 36.7 36.6 72 189-266 506-577 (982)
76 KOG0213 Splicing factor 3b, su 82.3 1.2E+02 0.0025 36.1 48.9 255 105-431 564-829 (1172)
77 PF12460 MMS19_C: RNAPII trans 82.1 99 0.0021 35.2 31.1 317 439-777 42-412 (415)
78 KOG0212 Uncharacterized conser 82.0 1E+02 0.0022 35.4 27.1 216 483-736 204-422 (675)
79 PF08064 UME: UME (NUC010) dom 81.8 17 0.00036 32.2 10.0 71 707-777 30-102 (107)
80 PRK09687 putative lyase; Provi 81.6 78 0.0017 33.7 17.0 179 18-264 66-249 (280)
81 KOG2956 CLIP-associating prote 80.7 23 0.0005 39.4 12.2 58 207-266 419-478 (516)
82 KOG2256 Predicted protein invo 80.0 1E+02 0.0022 36.2 17.4 201 513-740 266-475 (661)
83 PF12717 Cnd1: non-SMC mitotic 79.2 34 0.00075 33.6 12.4 76 499-580 35-113 (178)
84 PF08767 CRM1_C: CRM1 C termin 77.9 56 0.0012 35.6 14.6 151 704-869 83-246 (319)
85 COG5240 SEC21 Vesicle coat com 77.2 21 0.00046 40.5 10.9 131 416-564 428-561 (898)
86 KOG1240 Protein kinase contain 76.7 1.3E+02 0.0029 37.9 17.9 239 458-760 439-686 (1431)
87 PF04510 DUF577: Family of unk 76.0 58 0.0012 31.3 11.9 54 81-145 3-59 (174)
88 PF14500 MMS19_N: Dos2-interac 73.8 1.2E+02 0.0027 31.8 18.0 212 526-776 39-255 (262)
89 PF13646 HEAT_2: HEAT repeats; 73.6 16 0.00034 30.7 7.4 57 5-66 2-58 (88)
90 PF05918 API5: Apoptosis inhib 73.5 1.9E+02 0.0041 33.9 18.9 48 517-566 47-94 (556)
91 PF12717 Cnd1: non-SMC mitotic 71.9 8.1 0.00017 38.0 5.8 47 513-561 9-55 (178)
92 PF11864 DUF3384: Domain of un 70.8 1.2E+02 0.0026 35.1 15.9 173 687-867 25-206 (464)
93 PF04388 Hamartin: Hamartin pr 70.7 1.2E+02 0.0025 37.0 16.0 127 802-942 80-207 (668)
94 PF00790 VHS: VHS domain; Int 70.1 96 0.0021 29.0 12.6 110 3-126 5-120 (140)
95 PF13251 DUF4042: Domain of un 69.5 51 0.0011 32.4 10.5 68 195-266 105-175 (182)
96 PF01603 B56: Protein phosphat 68.4 1.6E+02 0.0034 33.5 15.8 211 18-265 145-370 (409)
97 PF08167 RIX1: rRNA processing 67.9 99 0.0021 29.9 12.2 131 438-580 24-163 (165)
98 KOG4653 Uncharacterized conser 67.7 2.1E+02 0.0046 34.8 16.4 180 513-734 748-931 (982)
99 KOG1060 Vesicle coat complex A 66.7 2.9E+02 0.0064 33.3 31.6 75 376-476 137-211 (968)
100 PF10521 DUF2454: Protein of u 65.7 91 0.002 33.3 12.6 75 189-266 117-204 (282)
101 cd00020 ARM Armadillo/beta-cat 65.2 37 0.0008 30.2 8.4 60 205-266 18-79 (120)
102 PF05918 API5: Apoptosis inhib 65.0 2.8E+02 0.0061 32.5 22.2 245 663-961 44-294 (556)
103 KOG1967 DNA repair/transcripti 64.9 1.3E+02 0.0029 36.7 14.2 183 521-743 808-1005(1030)
104 PF10274 ParcG: Parkin co-regu 63.0 33 0.00071 33.6 7.6 87 688-776 36-129 (183)
105 PF08167 RIX1: rRNA processing 62.0 72 0.0016 30.9 10.0 86 688-774 65-158 (165)
106 KOG1062 Vesicle coat complex A 60.6 3.8E+02 0.0082 32.5 34.2 71 502-577 480-560 (866)
107 cd03567 VHS_GGA VHS domain fam 59.9 1E+02 0.0022 28.8 10.1 110 4-121 2-114 (139)
108 KOG1993 Nuclear transport rece 57.9 4.2E+02 0.0091 32.2 21.2 160 545-738 501-661 (978)
109 cd03561 VHS VHS domain family; 57.7 1.1E+02 0.0024 28.3 10.1 112 5-128 2-116 (133)
110 COG5240 SEC21 Vesicle coat com 57.4 3.6E+02 0.0078 31.3 19.1 32 234-267 487-518 (898)
111 KOG0414 Chromosome condensatio 56.3 67 0.0014 40.2 10.2 148 686-868 915-1065(1251)
112 PF00514 Arm: Armadillo/beta-c 55.4 11 0.00023 26.5 2.3 22 539-560 20-41 (41)
113 PF13646 HEAT_2: HEAT repeats; 55.0 27 0.00059 29.2 5.2 45 18-63 43-87 (88)
114 COG5096 Vesicle coat complex, 54.5 1.7E+02 0.0037 35.6 13.1 123 18-161 67-196 (757)
115 KOG1525 Sister chromatid cohes 53.8 6.4E+02 0.014 33.0 23.5 82 527-613 46-130 (1266)
116 KOG1240 Protein kinase contain 53.7 5.9E+02 0.013 32.6 22.7 56 209-267 438-493 (1431)
117 PF14500 MMS19_N: Dos2-interac 53.6 2.9E+02 0.0063 29.1 21.8 144 703-870 10-156 (262)
118 PF14225 MOR2-PAG1_C: Cell mor 52.6 58 0.0013 34.2 8.0 73 190-270 187-259 (262)
119 PRK13800 putative oxidoreducta 52.1 6.1E+02 0.013 32.3 25.2 55 6-66 625-679 (897)
120 cd03567 VHS_GGA VHS domain fam 50.9 47 0.001 31.0 6.4 53 513-567 22-74 (139)
121 cd00197 VHS_ENTH_ANTH VHS, ENT 50.5 1.8E+02 0.004 25.9 10.2 109 5-121 2-113 (115)
122 KOG1060 Vesicle coat complex A 49.8 5.5E+02 0.012 31.2 16.2 169 50-279 298-470 (968)
123 PF01347 Vitellogenin_N: Lipop 47.4 3.1E+02 0.0067 33.2 14.6 68 189-262 519-586 (618)
124 PF14868 DUF4487: Domain of un 47.1 5.5E+02 0.012 30.3 20.5 38 600-641 357-394 (559)
125 COG5096 Vesicle coat complex, 46.6 2.1E+02 0.0046 34.8 12.2 126 416-561 70-196 (757)
126 PF11229 DUF3028: Protein of u 46.2 4.3E+02 0.0094 30.3 13.5 205 67-309 139-352 (589)
127 cd03568 VHS_STAM VHS domain fa 46.0 1.6E+02 0.0035 27.7 9.2 53 513-567 21-73 (144)
128 smart00638 LPD_N Lipoprotein N 44.8 6.1E+02 0.013 30.2 16.5 68 189-262 475-542 (574)
129 PF04118 Dopey_N: Dopey, N-ter 43.2 4.6E+02 0.01 28.3 13.4 129 707-869 70-203 (307)
130 KOG0168 Putative ubiquitin fus 42.0 3.4E+02 0.0074 33.1 12.6 53 662-724 315-367 (1051)
131 PF12530 DUF3730: Protein of u 42.0 4.1E+02 0.0089 27.4 20.5 131 18-160 13-151 (234)
132 smart00288 VHS Domain present 41.1 2.9E+02 0.0064 25.5 11.7 105 5-121 2-109 (133)
133 KOG1077 Vesicle coat complex A 41.0 7.1E+02 0.015 29.9 36.1 53 506-561 499-551 (938)
134 KOG3687 Tuberin - Rap/ran-GTPa 39.8 8.5E+02 0.018 30.4 21.0 36 39-74 68-103 (1697)
135 KOG2753 Uncharacterized conser 39.4 3.4E+02 0.0075 29.1 10.9 74 524-613 102-177 (378)
136 cd03569 VHS_Hrs_Vps27p VHS dom 38.7 3E+02 0.0065 25.8 9.8 106 3-121 4-112 (142)
137 smart00288 VHS Domain present 38.3 91 0.002 28.9 6.2 53 513-567 21-73 (133)
138 cd03572 ENTH_epsin_related ENT 38.3 1.6E+02 0.0034 26.8 7.4 55 513-569 22-76 (122)
139 KOG1820 Microtubule-associated 38.2 8.8E+02 0.019 30.2 17.1 159 736-943 301-459 (815)
140 cd03568 VHS_STAM VHS domain fa 38.1 3.5E+02 0.0075 25.5 11.4 109 5-127 2-113 (144)
141 KOG1058 Vesicle coat complex C 37.4 8.3E+02 0.018 29.6 23.2 94 414-521 372-466 (948)
142 KOG2032 Uncharacterized conser 36.4 7.1E+02 0.015 28.5 20.9 56 525-582 254-309 (533)
143 PF08161 NUC173: NUC173 domain 35.1 3E+02 0.0065 27.5 9.7 138 660-819 19-178 (198)
144 cd03569 VHS_Hrs_Vps27p VHS dom 34.9 1.1E+02 0.0025 28.6 6.3 52 514-567 26-77 (142)
145 cd08050 TAF6 TATA Binding Prot 34.6 3.7E+02 0.008 29.6 11.3 141 437-610 176-335 (343)
146 cd00197 VHS_ENTH_ANTH VHS, ENT 34.6 93 0.002 27.9 5.6 50 518-569 26-75 (115)
147 cd03561 VHS VHS domain family; 34.2 1.2E+02 0.0026 28.0 6.4 53 513-567 21-73 (133)
148 PF08623 TIP120: TATA-binding 33.7 60 0.0013 31.4 4.3 73 506-582 44-116 (169)
149 PF00790 VHS: VHS domain; Int 33.7 1.1E+02 0.0024 28.6 6.1 53 513-567 26-78 (140)
150 COG5101 CRM1 Importin beta-rel 33.6 4.2E+02 0.009 31.2 11.2 173 688-869 190-373 (1053)
151 PF12719 Cnd3: Nuclear condens 33.3 3.2E+02 0.007 29.4 10.5 115 483-615 22-146 (298)
152 PLN03076 ARF guanine nucleotid 32.9 1.5E+03 0.032 31.3 28.8 98 52-162 1150-1255(1780)
153 PF05804 KAP: Kinesin-associat 32.7 1E+03 0.022 29.2 19.7 215 460-722 388-608 (708)
154 PF10363 DUF2435: Protein of u 32.6 3.1E+02 0.0068 23.5 8.1 81 41-141 6-86 (92)
155 PF10363 DUF2435: Protein of u 32.5 2.4E+02 0.0053 24.1 7.4 43 539-582 11-53 (92)
156 KOG1058 Vesicle coat complex C 32.1 1E+03 0.022 29.0 29.4 53 523-578 128-180 (948)
157 cd03565 VHS_Tom1 VHS domain fa 31.5 4.4E+02 0.0096 24.7 12.1 106 4-121 2-113 (141)
158 PF10521 DUF2454: Protein of u 29.7 7.1E+02 0.015 26.5 12.8 42 519-566 112-154 (282)
159 smart00185 ARM Armadillo/beta- 29.5 37 0.0008 23.3 1.7 21 539-559 20-40 (41)
160 KOG0946 ER-Golgi vesicle-tethe 29.4 1.1E+03 0.024 28.8 27.0 198 548-823 40-245 (970)
161 KOG0889 Histone acetyltransfer 29.1 6E+02 0.013 36.7 13.3 158 682-867 629-796 (3550)
162 KOG1820 Microtubule-associated 28.3 4E+02 0.0087 33.0 10.9 139 706-871 309-447 (815)
163 KOG2199 Signal transducing ada 28.3 8.5E+02 0.018 27.0 12.7 68 3-72 8-78 (462)
164 PLN03076 ARF guanine nucleotid 27.9 1.8E+03 0.038 30.6 30.8 119 455-581 1098-1233(1780)
165 KOG0946 ER-Golgi vesicle-tethe 26.5 1.3E+03 0.027 28.4 22.1 53 528-582 165-218 (970)
166 PF11865 DUF3385: Domain of un 26.3 5.8E+02 0.013 24.4 11.0 33 748-780 105-137 (160)
167 PF08389 Xpo1: Exportin 1-like 26.0 5.2E+02 0.011 23.8 12.0 133 707-862 3-148 (148)
168 KOG2549 Transcription initiati 25.8 1.1E+03 0.024 27.5 15.8 98 526-642 289-390 (576)
169 PF08623 TIP120: TATA-binding 25.5 2.8E+02 0.0061 26.9 7.3 57 803-869 40-96 (169)
170 PF11865 DUF3385: Domain of un 25.3 2.9E+02 0.0062 26.6 7.4 36 707-742 102-137 (160)
171 KOG1086 Cytosolic sorting prot 24.9 4.7E+02 0.01 29.1 9.3 69 4-74 9-80 (594)
172 PF04118 Dopey_N: Dopey, N-ter 24.9 9E+02 0.02 26.1 18.6 45 937-982 248-299 (307)
173 PF12333 Ipi1_N: Rix1 complex 24.6 1.1E+02 0.0023 26.9 4.0 57 526-584 8-65 (102)
174 PF06371 Drf_GBD: Diaphanous G 23.2 3.4E+02 0.0073 26.6 7.9 75 188-264 108-186 (187)
175 cd05135 RasGAP_RASAL Ras GTPas 23.0 1E+03 0.022 26.1 13.9 181 753-961 82-283 (333)
176 PF10835 DUF2573: Protein of u 22.8 2.9E+02 0.0062 22.6 5.4 47 45-92 17-71 (82)
177 KOG4653 Uncharacterized conser 22.7 9.5E+02 0.021 29.7 12.0 141 711-871 825-968 (982)
178 PF14911 MMS22L_C: S-phase gen 22.7 1.1E+03 0.023 26.3 15.1 21 850-870 270-290 (373)
179 KOG1992 Nuclear export recepto 22.4 1.5E+03 0.033 27.9 52.2 97 687-786 495-604 (960)
180 KOG2199 Signal transducing ada 20.9 4.1E+02 0.0089 29.2 7.9 54 512-567 28-81 (462)
181 PF11864 DUF3384: Domain of un 20.0 1.4E+03 0.03 26.4 26.9 65 22-91 7-76 (464)
No 1
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-128 Score=1033.75 Aligned_cols=958 Identities=36% Similarity=0.563 Sum_probs=864.5
Q ss_pred ChHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 001968 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTSMSSEER 79 (989)
Q Consensus 1 m~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~w~~l~~~~~ 79 (989)
||+++|||.++++|+ .|++.|+||-+|++++|.+|++|++|.+++... .++.+||||+|||.++++..+++++..+.
T Consensus 2 mddiEqav~a~ndp~--vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~el 79 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPR--VDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNEL 79 (980)
T ss_pred chHHHHHHHhhCCCc--ccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence 899999999999995 799999999999999999999999999999876 56899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchh--HHHHHHHHHH
Q 001968 80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMV--IDMFCRVLNS 157 (989)
Q Consensus 80 ~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~--~~~~L~iL~~ 157 (989)
+.+|.++++|+.....++++ ...|.||+||++++++.++..+||+.|++||.|+...+..++.. .++++++|..
T Consensus 80 qlvR~sv~swlk~qvl~ne~----~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 80 QLVRFSVTSWLKFQVLGNEQ----TKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHhCccc----CCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 99999999999876443211 35799999999999999999999999999999999999887755 9999999999
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CHHHHHHHHHHhhccccccccccccccccH
Q 001968 158 LDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSS-DFEVCTGVLDCMRRYISWIDINLIANDAFI 236 (989)
Q Consensus 158 l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~-~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l 236 (989)
|..|+++.++.|+++...|++.+||+||++|+|++.+.|++++..|++. ++++...||+|+++|++|||+++++|+.++
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~ 235 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFL 235 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHH
Confidence 9999999999999999999999999999999999999999999998766 999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhh-hhhhhcc--ccCCcchHHHHHHHHHHHHHHHHHH
Q 001968 237 PLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ-ISRVFGL--VSEDGESELVSKVAALLTGYAMEVL 313 (989)
Q Consensus 237 ~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~-l~~~~~~--~~~~~d~~~~~~~~~l~~~~~~~~~ 313 (989)
+++++++. .+++|.+|++|+.+|++|+|+|-+|+.+++.|+ ..+++.. ..+.+|.++.++++++++++|.|+.
T Consensus 236 nLLy~fl~----ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~ 311 (980)
T KOG2021|consen 236 NLLYKFLN----IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELT 311 (980)
T ss_pred HHHHHHHh----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeee
Confidence 99999996 699999999999999999999999999998873 3333322 2445899999999999999999999
Q ss_pred HHHhhccch-h--hHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHc
Q 001968 314 DCVKRLNAE-N--ANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQI 390 (989)
Q Consensus 314 ~~~~~~~~~-~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~ 390 (989)
.++..++++ + .++.+...+...+|.+++++.|++++.++.+++||++|+..+|+.+.+.+..+..+.+++.++++|+
T Consensus 312 ~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqi 391 (980)
T KOG2021|consen 312 IIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQI 391 (980)
T ss_pred hhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHH
Confidence 888766433 2 1233444555688999999999988888899999999999999887777888889999999999999
Q ss_pred ccCcccccccccccc-CChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHh
Q 001968 391 RYDPMYRNNLDVLDK-IGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYAL 469 (989)
Q Consensus 391 ~~p~~~~~~~~~~~~-~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i 469 (989)
+|++.+.. .|+ .++|||+.|.++|+++..+++.+..++|+..+..|.+.+..++.+.+...|+.+|+|+|.++.+
T Consensus 392 cydemy~n----ddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~l 467 (980)
T KOG2021|consen 392 CYDEMYFN----DDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNL 467 (980)
T ss_pred hccHHhhc----ccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 99998753 233 4567899999999999999999999999999999999999999888889999999999999999
Q ss_pred cccCchhhhhcc------cccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCC
Q 001968 470 GESMSEEAMRTG------AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHP 543 (989)
Q Consensus 470 ~e~~~~~~~~~~------~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~ 543 (989)
||+++.+..... .+++.+++.+++.+.++.++|+.|++.|+|+++||..|+...++++|.++++++++||+|+.
T Consensus 468 gE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ 547 (980)
T KOG2021|consen 468 GECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNK 547 (980)
T ss_pred hhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhcccc
Confidence 999998754322 24666888888889999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhcccc-CCcccccCCCCcchhHHHHHHHHHHccCCCChhhHH
Q 001968 544 NVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTS-MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQS 622 (989)
Q Consensus 544 ~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~-~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~ 622 (989)
+.+||.||+|+|.||+|..++.+.||++.+++.+++++....+ +...+....+.++++++||++|.+|+....|+|++.
T Consensus 548 ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qa 627 (980)
T KOG2021|consen 548 NENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQA 627 (980)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHH
Confidence 9999999999999999999999999999999999999953321 111223445678999999999999999888999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcC
Q 001968 623 DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF 702 (989)
Q Consensus 623 ~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 702 (989)
.|...++.|++.+..-........++++.+..++.++++++++|+++|||....++.+++.+..+|.++.++++.++..+
T Consensus 628 ay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f 707 (980)
T KOG2021|consen 628 AYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFF 707 (980)
T ss_pred HHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhc
Confidence 99999999999887665554443345556777889999999999999999988888888889999999999999999999
Q ss_pred CCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHh
Q 001968 703 PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFN 782 (989)
Q Consensus 703 ~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~ 782 (989)
+..+.+|.+++.++|||+.++|++++||+|.+++.++.+.+.+++.+|+.+++|++++|+.++.+++.+++++++.++|.
T Consensus 708 ~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfs 787 (980)
T KOG2021|consen 708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFS 787 (980)
T ss_pred cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHH
Q 001968 783 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIF 862 (989)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l 862 (989)
.|...+. +.+++...+.-++|++|++|+.++..+++++++.+..++.++..++..+++++...+||..+|++....
T Consensus 788 vi~r~a~----p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lc 863 (980)
T KOG2021|consen 788 VIERIAK----PIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLC 863 (980)
T ss_pred HhcccCC----CCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHH
Confidence 9987533 345677789999999999999999999999999888888899999999999998889999999999999
Q ss_pred HHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 001968 863 IRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGF 942 (989)
Q Consensus 863 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~~~~~~~~~l~~~~~~~~ 942 (989)
+.++..|++. ++-.||+.|.+..+++.+|+..++.+.||++||+...+++|++.++|.+..++|++++.++.+.+|
T Consensus 864 nk~v~lwggk----dg~~gf~dfvlk~~~ln~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~i~ek~gnecv~yL~q~yl 939 (980)
T KOG2021|consen 864 NKIVCLWGGK----DGDNGFKDFVLKIDGLNKCFPIPLEIPFNIKDGNTKTMLGELARLLKEIFEKSGNECVKYLTQIYL 939 (980)
T ss_pred HHHHHhcCCc----CCccccccceeecccccceeeecccCCcccccchHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence 9999999875 455679999999988878999999999999999999999999999999999999999999888999
Q ss_pred CCCCCCHHHHHHHHHHhccCChhHHHH-HHHHHHHHHHh
Q 001968 943 PSAHCPPDLAEQYCQKLQGNDIKALKS-FYQSLIEKLRV 980 (989)
Q Consensus 943 P~~~~~~~~~~~f~~~l~~~~~~~f~~-~~~~f~~~~r~ 980 (989)
|+.++|++.+.+|||.|.+-|.|.||+ +++.|+..+|.
T Consensus 940 Ps~q~pqela~qycqaLq~~d~k~Fk~~f~~~fis~lkp 978 (980)
T KOG2021|consen 940 PSIQLPQELAIQYCQALQTMDQKQFKKWFVDNFISVLKP 978 (980)
T ss_pred ccccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999 99999998774
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-66 Score=545.37 Aligned_cols=905 Identities=17% Similarity=0.241 Sum_probs=626.1
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIR 83 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr 83 (989)
+.+.|..+|.| +...++||++.|.+||..|++|+-+..+|..+..|+.+|.|+++|++.|+++|.-+|.+.|.++|
T Consensus 16 lDkVVttfyqg----~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiR 91 (1053)
T COG5101 16 LDKVVTTFYQG----DGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIR 91 (1053)
T ss_pred HHHHHHHhcCC----CchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHH
Confidence 45778888987 77789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHh
Q 001968 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELI 163 (989)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Eev~ 163 (989)
+++++.+... +++.. .....+++.||+..+++.|++++||.+||+|++++++..+.+-.+|++.+.+|+.|+||+
T Consensus 92 nyvv~~vI~~---s~dd~-v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEv- 166 (1053)
T COG5101 92 NYVVQLVIEK---SQDDK-VRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEV- 166 (1053)
T ss_pred HHHHHHHHHh---cccHH-HHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHH-
Confidence 9999998875 21111 124578999999999999999999999999999999999988889999999999999999
Q ss_pred hccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHH
Q 001968 164 SLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELI 243 (989)
Q Consensus 164 ~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l 243 (989)
++++...+++.|...+|..|..+ +++|+.+|.++|+. ++++.+++++|+.+.+|+.|+|++.+..++.++++...+
T Consensus 167 -FdfSaeqmTq~k~~~LkNqm~~E-F~qIF~lc~qiLE~--~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f 242 (1053)
T COG5101 167 -FDFSAEQMTQVKKRLLKNQMKIE-FPQIFGLCKQILEY--SRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHF 242 (1053)
T ss_pred -HhccHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 66677788999999999999998 99999999999995 668899999999999999999999999999999999988
Q ss_pred HhcCCChhHHhHHHHHHHHHHhcCCCcch---hhh----Hhhhh-------hh---hhhhccc--cCCcchHHHHHHHHH
Q 001968 244 LADGLPEQFRGAAVGCVLAVVSKRMDPQS---KLN----LLQTL-------QI---SRVFGLV--SEDGESELVSKVAAL 304 (989)
Q Consensus 244 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~---k~~----li~~l-------~l---~~~~~~~--~~~~d~~~~~~~~~l 304 (989)
. +.|++|.++++||.||++.+..|.+ |-. .++.. +. .++.+.+ .+..|..|...+|.+
T Consensus 243 ~---s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~f 319 (1053)
T COG5101 243 N---SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQF 319 (1053)
T ss_pred c---cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHH
Confidence 6 5899999999999999998865421 111 11111 00 1122222 233567899999999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccch--h-cHHHHHHHHHHHhcc---------CCCC-
Q 001968 305 LTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTT--F-SIVQFLSGYVATMKS---------LSPL- 371 (989)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~-~~~~~~~~~l~~~~~---------~~~~- 371 (989)
++++...++..++. .+ ....++....++...+.+.++ | .++++|+.++..+.. .+|+
T Consensus 320 L~s~~~~~~~lLE~---~e-------~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli 389 (1053)
T COG5101 320 LSSLYEVYISLLEA---RE-------MAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLI 389 (1053)
T ss_pred HHHHHHHHHHHhcC---hh-------HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcch
Confidence 99888877655432 11 122233333344444434433 1 456777766655411 0111
Q ss_pred ----------------------hHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHH------HHHHHHHHH
Q 001968 372 ----------------------KEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRM------VEYRKDLLV 423 (989)
Q Consensus 372 ----------------------~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f------~~~R~~l~~ 423 (989)
...+..++.++.-+++.+|..|++.. ..+++++|---+| -++-+.+++
T Consensus 390 ~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVl----iVendegEivRefvketDtI~lYksmRe 465 (1053)
T COG5101 390 QLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVL----IVENDEGEIVREFVKETDTIELYKSMRE 465 (1053)
T ss_pred hccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEE----EEECCCcHHHHHHhccccHhHHHHHHhh
Confidence 01256677888888899999998753 1111111110011 123344566
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhc-ccccHHHHHHHHHhCCCCCCCC
Q 001968 424 LLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT-GAGHLSELVPMLLQTKLPCHSN 502 (989)
Q Consensus 424 ~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~-~~~~l~~ll~~ll~~~~~~~~~ 502 (989)
++-..+++...++..++.+.+...+.+ ..=+|+.+-.-..++++++-...+..-+. --.++..++...- .-....+
T Consensus 466 vLvyLthL~v~Dte~~mi~Klarq~dg-~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~Lce--mKrgKdn 542 (1053)
T COG5101 466 VLVYLTHLIVDDTEKYMIGKLARQLDG-KEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCE--MKRGKDN 542 (1053)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhcC-CccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHH--HhhcCCc
Confidence 666777777666767766666655533 33457777777777777776665431110 0023334443221 2234566
Q ss_pred chH---HHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch--------hhHH
Q 001968 503 RLV---ALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--------PFIE 571 (989)
Q Consensus 503 ~~v---~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~--------p~~~ 571 (989)
++| .+|| ++|+|++|++.|+.+|.+|+.++|+ +||+.+++|+++||..|.+++++|+.++. ||+.
T Consensus 543 KAVvASnIMy--vvGQYpRFLkahw~FLkTVv~KLFE--FMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~ 618 (1053)
T COG5101 543 KAVVASNIMY--VVGQYPRFLKAHWSFLKTVVKKLFE--FMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIV 618 (1053)
T ss_pred chhhecceee--eeccchHHHHHHHHHHHHHHHHHHH--HHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHH
Confidence 777 3999 8999999999999999999999999 99999999999999999999999998774 8899
Q ss_pred HHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhh----cC
Q 001968 572 NILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKM----LN 647 (989)
Q Consensus 572 ~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~----~~ 647 (989)
.|+..+........ +.+...+|||+|.+|+..+ ...++...+-.+++-+.+.|.+...++.. .+
T Consensus 619 ~Iirnl~ktT~dL~-----------pqQ~htfYeAcg~vIse~p-~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~ 686 (1053)
T COG5101 619 YIIRNLPKTTGDLE-----------PQQKHTFYEACGMVISEVP-KTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLS 686 (1053)
T ss_pred HHHHhhhhhcccCC-----------hHHHhHHHHHHhHHHhccc-hhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhc
Confidence 99888876654332 2356778999999999965 34566677788888888889887655431 11
Q ss_pred CchhhhHHHH-HHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHH------hhcCCCChhHhH---HHHHHHH
Q 001968 648 PEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQI------LVVFPKVEPLRC---KVTSFIH 717 (989)
Q Consensus 648 ~~~~~~~~~~-i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~i~e---~~~~~~~ 717 (989)
++......+. +..-.....+++.+|-+..+..+...+.+++.-...+-..+ ...-+....+|. .+...+.
T Consensus 687 d~~tvki~an~~ktnVa~ctslg~~fyPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~ 766 (1053)
T COG5101 687 DTMTVKIDANKMKTNVAKCTSLGYRFYPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVA 766 (1053)
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHH
Confidence 1111111111 11111223444544432211000001112222111111111 112222222222 2222222
Q ss_pred HHHhhh-ccc--ccCchHHHHHHHHccCCh----hHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCC
Q 001968 718 RMVDTL-GAS--VFPYLPKALEQLLAESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFP 790 (989)
Q Consensus 718 ~~~~~l-~~~--~~p~l~~l~~~ll~~~~~----~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~ 790 (989)
.-+.-. ..+ .-.+++.+++.++-+|.. .+.+++|++.+.++.+.++-+.....-++...+..+..++..
T Consensus 767 tyIska~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~mi~k---- 842 (1053)
T COG5101 767 TYISKARDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIMIVK---- 842 (1053)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHh----
Confidence 222111 111 135667777777777621 234899999999999999776666666777888888888876
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cCCCC-cCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHH
Q 001968 791 SGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVF-LSPKS-RGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 868 (989)
Q Consensus 791 ~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~-~s~~~-~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~ 868 (989)
++.++||+|.+||.++..+..++++++| ++++. +.+.+++++++ +|..+++...+++++..+++.
T Consensus 843 --------df~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsf-----khi~RDv~~~gLnill~l~kn 909 (1053)
T COG5101 843 --------DFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSF-----KHINRDVSDLGLNILLILFKN 909 (1053)
T ss_pred --------hhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHH-----HhccchHhhhhhHHHHHHHHH
Confidence 6779999999999999999999999987 33332 55667777777 888999999999999999999
Q ss_pred hhCCCCCCCCcchHHHHHHHhhhhhhhhhhcc----CCCCCcccchhhHhHHHHHHHHHH------------HHHHHhHH
Q 001968 869 WCARPFVEEKVPGFQSFMIEAFAMNCCLYSVL----DKSFEFGDANTLVLFGEIVLAQKV------------MYEKFGND 932 (989)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~f~~~d~~~~~~~~ei~~~l~~------------~~~~~~~~ 932 (989)
....+ .....++|.++++..+-. .+.++. +.+|+.+ + .++.-...+.+. -+..+..+
T Consensus 910 ~~~mg-~~~~n~F~~~yy~s~l~~--il~vltDsDhKsgF~~Q---~-Llla~li~lv~dnkisVPlyd~~~~n~~~lse 982 (1053)
T COG5101 910 CHEMG-VPFINQFYAQYYMSTLEN--ILGVLTDSDHKSGFDQQ---C-LLLAFLIRLVKDNKISVPLYDGINPNITILSE 982 (1053)
T ss_pred HHHhC-CchHHHHHHHHHHHHHHH--HHeeeeccchhccchHH---H-HHHHHHHHHHhccccccccccCCCCchhhHHH
Confidence 86542 112345666666543221 123332 2333322 1 222222222221 13345567
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhhcc
Q 001968 933 FLVHFVTKGFPSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKLRVQQN 983 (989)
Q Consensus 933 ~l~~~~~~~~P~~~~~~~~~~~f~~~l~~--~~~~~f~~~~~~f~~~~r~~~~ 983 (989)
++..++...|| ++++++..-|...|+. .|..-||.+++||..+.+++.+
T Consensus 983 yi~~l~~~sfp--~it~e~v~~f~~~l~~~~~d~~ifk~~~~df~vkv~e~g~ 1033 (1053)
T COG5101 983 YIVGLFVKSFP--NITQESVKIFSVGLFELCGDDEIFKEHVEDFRVKVYEFGT 1033 (1053)
T ss_pred HHHHHHHhhcC--cccHHHHHHHHHHHHHHhCcHHHHHHHHHHHhhheeeeCC
Confidence 88888889999 9999999999999999 7999999999999999988643
No 3
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-64 Score=552.80 Aligned_cols=902 Identities=15% Similarity=0.199 Sum_probs=667.1
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
++++++|..+|.+ .+.+.+..+++||++.|.+|.+|.+.+++|+..+++++|||||.+|..||+++|++.+++++..
T Consensus 7 a~v~~~v~~lY~~---~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q 83 (982)
T KOG2022|consen 7 ATVEELVTTLYSH---RNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQ 83 (982)
T ss_pred HHHHHHHHHHhcC---CChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence 3588999999987 4888999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC--c-----hhHHHHHHH
Q 001968 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG--S-----MVIDMFCRV 154 (989)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~--~-----~~~~~~L~i 154 (989)
++..++..+... .++++.|.||+|.+++.++.+..|+.||+.+.+++.+++.+ + ..+...|+.
T Consensus 84 L~~klf~~l~~~----------~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~ 153 (982)
T KOG2022|consen 84 LKLKLFLILSRF----------AGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEV 153 (982)
T ss_pred HHHHHHHHHHHh----------cCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHH
Confidence 999999998876 35699999999999999999999999999999999998762 2 467889999
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH-----HHHHHHHHhhcccccccccc
Q 001968 155 LNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFE-----VCTGVLDCMRRYISWIDINL 229 (989)
Q Consensus 155 L~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~-----l~~~~L~~l~~~i~wi~~~~ 229 (989)
|..+|+|... ......|+..++..+... ...++.++..++....++... ....+++|++.|+.++....
T Consensus 154 Ls~~p~e~q~-----~~l~~t~~~~l~~eLak~-~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~ 227 (982)
T KOG2022|consen 154 LSFMPAEFQH-----VTLPLTRRSVLRGELAKF-SENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG 227 (982)
T ss_pred hccCcHhhhh-----ccchhHHHHHHHHHHHHH-HHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 9999999733 345567888999988886 777777777777765433333 35799999999999887765
Q ss_pred ccccccHHHHHHHHHhcCCChhHHhHHHHHHHH------------HHhcCCCcch----h--hhHhhhh-h-hhhhhc--
Q 001968 230 IANDAFIPLLFELILADGLPEQFRGAAVGCVLA------------VVSKRMDPQS----K--LNLLQTL-Q-ISRVFG-- 287 (989)
Q Consensus 230 ~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~------------i~~~~~~~~~----k--~~li~~l-~-l~~~~~-- 287 (989)
.....+++.++..+.. ......+++-+|+.. .+.....|+. + ..++... + +.++-.
T Consensus 228 ~~c~~i~~~ll~~l~~--s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 MDCDQITQVLLDVLGQ--STEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred ccHHHHHHHHHHHHhh--hccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777653 122334444444322 1111111110 0 0111111 1 112111
Q ss_pred cccCCcc--hHHHHHHHHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHHHHHHHHHhhcCc---ccchh--cHHHHHH
Q 001968 288 LVSEDGE--SELVSKVAALLTGYAMEVLDCV-KRLNAENANEASKKLLNEVLPSVFYVMQNCE---VDTTF--SIVQFLS 359 (989)
Q Consensus 288 ~~~~~~d--~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~--~~~~~~~ 359 (989)
....+.| +|-.-.+..+...++..++..+ ....++ .-.+.+..++..++.+++.+. +++.+ ....||.
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g----~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~ 381 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQG----EQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWY 381 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhc----chHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHH
Confidence 1112233 4444455565555555544332 111111 011355667777777777663 22211 3344554
Q ss_pred HHHHH---hccC--CCChHHHh-HhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhCh
Q 001968 360 GYVAT---MKSL--SPLKEEQR-LHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAP 433 (989)
Q Consensus 360 ~~l~~---~~~~--~~~~~~~~-~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~ 433 (989)
.+... ++.. .+-...++ +++.++++.+++|+.+|.++. |. +|..++.+.|+.||+++.|++.+++++.+
T Consensus 382 tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~----~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilg 456 (982)
T KOG2022|consen 382 TLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEI----WL-SWSSDSREQFESYRKDISDLLMSSYSILG 456 (982)
T ss_pred HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHH----hc-cCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43333 3221 22223344 899999999999999998864 43 36677899999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhcCCC--CCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHH
Q 001968 434 EVTQVFIRNSLANAVTFSA--DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLE 511 (989)
Q Consensus 434 ~~~l~~i~~~l~~~~~~~~--~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~ 511 (989)
+..+.++...+.++++++. ...|...|+++|++..+++.+..+ ....++.++.......+.. ++|-..-+..+
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t----~~~~i~rl~~~~asik~S~-~n~ql~~Tss~ 531 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET----ESTWIPRLFETSASIKLSA-PNPQLLSTSSD 531 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc----hhHHHHHHHHhcccccccc-CChhHHHHHHH
Confidence 8889999999999987642 345999999999999999999876 4456788887766444333 35555444455
Q ss_pred HHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCccc
Q 001968 512 TVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYAS 591 (989)
Q Consensus 512 ~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~ 591 (989)
++|.|+.|+..||.+|++.++.++. |+|++ +-...|...+.+||++|+.+|.||.++++..+++.+.....
T Consensus 532 ~igs~s~~l~e~P~~ln~sl~~L~~--~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~----- 602 (982)
T KOG2022|consen 532 LIGSLSNWLGEHPMYLNPSLPLLFQ--GLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNA----- 602 (982)
T ss_pred HHHHHHHHHhcCCcccCchHHHHHH--HhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccccc-----
Confidence 8999999999999999999999998 99854 55677778899999999999999999999999998864322
Q ss_pred ccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccC
Q 001968 592 KELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKG 671 (989)
Q Consensus 592 ~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~ 671 (989)
+..++..++.++|++++.. -+|++.+|+.+++.|++++++.++.... ++++...++.+.+.+++.+...
T Consensus 603 ----~~S~~~klm~sIGyvls~~--~pEe~~kyl~~lin~il~qle~~l~~~i-----~~~e~~l~~~~~l~~iS~LftS 671 (982)
T KOG2022|consen 603 ----KDSDRLKLMKSIGYVLSRL--KPEEIPKYLMKLINPILSQLEINLAPGI-----DDQENHLRIAFQLNTISALFTS 671 (982)
T ss_pred ----CchHHHHHHHHHHHHHHhc--cHHhHHHHHHHHHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHHHHHHhc
Confidence 2457899999999999995 4899999999999999999999875322 2334445566778888888777
Q ss_pred CCCCCcCC--C----------cCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccc-cCchHHHHHHH
Q 001968 672 FNERLVTS--S----------RPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV-FPYLPKALEQL 738 (989)
Q Consensus 672 ~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~-~p~l~~l~~~l 738 (989)
+....... + +..+..+.+++++++..+++.|.++..+.|++|..+.+.++.+++.+ .|++|.+++.+
T Consensus 672 L~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi 751 (982)
T KOG2022|consen 672 LINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFI 751 (982)
T ss_pred cCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence 65321110 0 11456789999999999999999999999999999999999999988 89999999977
Q ss_pred HccCChhHHHHHHHHHHHHHH-Hhhhh-hHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 001968 739 LAESEPKEMAGFLVLLNQLIC-KFNTL-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHV 816 (989)
Q Consensus 739 l~~~~~~~~~~~L~l~~~li~-~~~~~-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~ 816 (989)
.. +.+.+....+.+...++. +++.. +.+.+...|...+++.+-++++. .++++||+...++.|+..
T Consensus 752 ~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~-----------~f~n~~Di~~~~~~~v~~ 819 (982)
T KOG2022|consen 752 VR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQH-----------PFSNQPDIYLQLIGFVRQ 819 (982)
T ss_pred HH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhcc-----------CCCCCchHHHHHHHHHHH
Confidence 77 544443444555555444 45554 78888888999999999888873 356889999999999999
Q ss_pred HHhcCCCccccCCCCcCChHHHHH-HHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhh
Q 001968 817 IATHDLSSVFLSPKSRGYLDPIMQ-LLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCC 895 (989)
Q Consensus 817 ~~~~~~~~~~~s~~~~~~~~~il~-~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (989)
++++.+ .++.+. ..-+.+++. ..+.+. ..|++...+++.+|+..++...+++ . .....+++.+. ++.+.
T Consensus 820 ilkk~P-~~~~~~--~~~~ts~i~~~a~~ll-~~pE~~~i~aa~qF~t~~~~~~~s~----~-~~tv~~~V~~~-G~~Li 889 (982)
T KOG2022|consen 820 ILKKIP-KFLEPS--MLAFTSLILICAFILL-NSPEPTTIRAASQFLTALATYATSH----D-LVTVTSVVAEI-GPILI 889 (982)
T ss_pred HHHhCc-Cccccc--hHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHhhcccc----h-hHHHHHHHHhc-chHHH
Confidence 999885 554321 223444444 333333 7899999999999999988776543 1 23444444432 22211
Q ss_pred hhhccCCCCCcccchhhHhHHHHHHHHHHHHHHHhHH---HHHHHHH-hcCCCCCCCHHHHHHHHHHhcc--CChhHHHH
Q 001968 896 LYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGND---FLVHFVT-KGFPSAHCPPDLAEQYCQKLQG--NDIKALKS 969 (989)
Q Consensus 896 ~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~~~~~~~~---~l~~~~~-~~~P~~~~~~~~~~~f~~~l~~--~~~~~f~~ 969 (989)
-. ++ .-+++.++|+-++..+++|.++++++-.+ |+...+. ..||+.+++++++.+|++.+.+ .++|.|++
T Consensus 890 ~~-im---~~vgg~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer~n~R~~k~ 965 (982)
T KOG2022|consen 890 YA-IM---RGVGGEASRSTLDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRERGNKRNFKQ 965 (982)
T ss_pred HH-HH---HHhcCcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHhcHHHHHH
Confidence 11 11 12477788999999999999999998765 5655554 4999999999999999999988 68899999
Q ss_pred HHHHHHHHHHhhccC
Q 001968 970 FYQSLIEKLRVQQNG 984 (989)
Q Consensus 970 ~~~~f~~~~r~~~~~ 984 (989)
.+..|...||+..|-
T Consensus 966 ~il~~~L~~~~l~~s 980 (982)
T KOG2022|consen 966 QILEFNLACTGLPNS 980 (982)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999999999998764
No 4
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-46 Score=393.97 Aligned_cols=542 Identities=17% Similarity=0.280 Sum_probs=420.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccC
Q 001968 24 SQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRV 103 (989)
Q Consensus 24 ~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~ 103 (989)
.+|.+||.+||+++++|.+|.++|+...+.+...||+|++++||++.++++|+....++|+++++++....
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~--------- 72 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELH--------- 72 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHH---------
Confidence 57999999999999999999999998877899999999999999999999999999999999999998761
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 001968 104 LESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDA 183 (989)
Q Consensus 104 ~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~ 183 (989)
..+..++++++.++|.++. .+| .|.+.+.++++..++.+.....+|.+|+.+|||+-+. +......|+..+.+.
T Consensus 73 -~~~~~i~tQL~vavA~Lal-~~~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~---~~~~~a~Rr~e~~~~ 146 (559)
T KOG2081|consen 73 -DHPDVIRTQLAVAVAALAL-HMP-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDI---RLTVGANRRHEFIDE 146 (559)
T ss_pred -hCCchHHHHHHHHHHHHHH-HhH-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcch---hhhhhhhhHHHHHHH
Confidence 2344999999999999966 454 7999999999999887766788999999999999542 345777899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccc--cccccccccc-ccHHHHHHHHHhcCCChhHHhHHHHHH
Q 001968 184 MRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYIS--WIDINLIAND-AFIPLLFELILADGLPEQFRGAAVGCV 260 (989)
Q Consensus 184 l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~--wi~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~a~~~l 260 (989)
+... .+.++.++..+|+.....+.....++|+|++||.. -.+.+.+.+. .++.++|..+. +.++.++|.+|+
T Consensus 147 l~~~-~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~----~~~lhe~At~ci 221 (559)
T KOG2081|consen 147 LAAQ-VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS----DDELHEEATECI 221 (559)
T ss_pred HHHh-HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc----cchhhHHHHHHH
Confidence 9996 99999999999987533346788999999999998 5777888776 89999999885 789999999999
Q ss_pred HHHHhcCCCcch--hhhHhhhhh---hhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHH
Q 001968 261 LAVVSKRMDPQS--KLNLLQTLQ---ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLN--AENANEASKKLLN 333 (989)
Q Consensus 261 ~~i~~~~~~~~~--k~~li~~l~---l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 333 (989)
+++++...++.+ ++..+..++ +...++.....+|.+-.+++|+++ +++++.+.... +++ ..+
T Consensus 222 c~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIF----tel~eaf~~~i~~np~------~~l- 290 (559)
T KOG2081|consen 222 CALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIF----TELGEAFVVLISTNPE------EFL- 290 (559)
T ss_pred HHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHH----HHHHHHHHHHHhhCCC------cch-
Confidence 999987554433 233222111 222223234567888888999954 45555542211 111 111
Q ss_pred HHHHHHHHHhhcCc---ccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhH
Q 001968 334 EVLPSVFYVMQNCE---VDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEE 410 (989)
Q Consensus 334 ~~l~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~ 410 (989)
..+.+++.+.+|++ ++.+|.+|+-+++.+.. .+.......|++++.++++.+.++++||++.++ -.|+
T Consensus 291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~-~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~--------l~Ee 361 (559)
T KOG2081|consen 291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTL-TDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFD--------LPEE 361 (559)
T ss_pred hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhc-cccHHHHHHhHHHHHHHHHHHHHHccCCCcccc--------Cccc
Confidence 24456666777775 34456666666655542 222233456899999999999999999995431 1356
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHH
Q 001968 411 EDRMVEYRKDLLVLLRSVGRV-APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV 489 (989)
Q Consensus 411 ~~~f~~~R~~l~~~l~~i~~i-~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll 489 (989)
+++|.+||..++|++++++.+ +.+.++..+...+.. +..+|+..||+||.|.+++..++.+ +++.+|+++
T Consensus 362 ~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e-----~~~~We~~EAaLF~l~~~~~~~~~~----e~~i~pevl 432 (559)
T KOG2081|consen 362 ESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE-----NNASWEEVEAALFILRAVAKNVSPE----ENTIMPEVL 432 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc-----CCCchHHHHHHHHHHHHHhccCCcc----ccchHHHHH
Confidence 788999999999999999876 677778877766664 3578999999999999999999876 678999999
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhh
Q 001968 490 PMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 569 (989)
Q Consensus 490 ~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~ 569 (989)
..+. ++|...| +..+.+..+|+|++|+..||+++.+++++++. |+... +.++.|+.++.++|..|+.++.++
T Consensus 433 ~~i~--nlp~Q~~--~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~--~~~~~--~~as~~a~~~~~i~~~c~~~~~~l 504 (559)
T KOG2081|consen 433 KLIC--NLPEQAP--LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQ--GLQLK--RLASAAALAFHRICSACRVQMTCL 504 (559)
T ss_pred HHHh--CCccchh--HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--Hhhhc--chhHHHHHHHHHHHHHHHHHhhhh
Confidence 9888 6676555 43333347999999999999999999999997 87654 389999999999999999988777
Q ss_pred HHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHH
Q 001968 570 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQ 635 (989)
Q Consensus 570 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~ 635 (989)
++.+..-+..+..... +.+... +..|++.+++. +|..+....+++++.|.+.+
T Consensus 505 ~~~~~~l~~~l~~~~~----------~~e~a~-l~~~~s~i~~~--lp~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 505 IPSLLELIRSLDSTQI----------NEEAAC-LLQGISLIISN--LPAHKAKIALEELCEPQLRN 557 (559)
T ss_pred hHHHHHHHHHHHHHhc----------cHHHHH-HHHHHHHHHhc--CCHhhhhHHHHHHhhHHHhc
Confidence 7766655544443221 123455 99999999999 67788888999998887654
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-43 Score=403.78 Aligned_cols=774 Identities=16% Similarity=0.222 Sum_probs=507.5
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l 82 (989)
++++.++.+.+| |+++|++|++.|+..-.++..-....+++.++.++++|.+|+..+|+.+.++|+.++.+.|++|
T Consensus 5 ~l~qLl~~l~sp----Dn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 5 PLEQLLQQLLSP----DNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHHHHHhcCC----CchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 489999999987 8899999999999666655567777788888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-chhHHHHHHHHHHHHHH
Q 001968 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDE 161 (989)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Ee 161 (989)
|..|+..+.++ ..+.||+|+|.++|+|++.+.|..||+.++.++++.++. +...+..++||..+|+.
T Consensus 81 ks~lL~~~~~E------------~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 81 KSSLLEIIQSE------------TEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPET 148 (1075)
T ss_pred HHHHHHHHHhc------------cchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence 99999999976 578899999999999999999999999999999999874 57899999999999999
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHH
Q 001968 162 LISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFE 241 (989)
Q Consensus 162 v~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~ 241 (989)
+++. .+.+ ++.+..++.+++.. .+++ ++..+++++.+++...+. +....+
T Consensus 149 ~~~~------------------~~~~-~~~l~~lf~q~~~d--~s~~-vr~~a~rA~~a~~~~~~~----~~~~~~---- 198 (1075)
T KOG2171|consen 149 FGNT------------------LQPH-LDDLLRLFSQTMTD--PSSP-VRVAAVRALGAFAEYLEN----NKSEVD---- 198 (1075)
T ss_pred hccc------------------cchh-HHHHHHHHHHhccC--Ccch-HHHHHHHHHHHHHHHhcc----chHHHH----
Confidence 8552 1222 56666666666653 2333 666777777666554431 011110
Q ss_pred HHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001968 242 LILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNA 321 (989)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (989)
...+ ++.. +..+++...+++|.+....+-+ .+.++++..+.+..
T Consensus 199 -------------~~~~-----------------llP~--~l~vl~~~i~~~d~~~a~~~l~----~l~El~e~~pk~l~ 242 (1075)
T KOG2171|consen 199 -------------KFRD-----------------LLPS--LLNVLQEVIQDGDDDAAKSALE----ALIELLESEPKLLR 242 (1075)
T ss_pred -------------HHHH-----------------HhHH--HHHHhHhhhhccchHHHHHHHH----HHHHHHhhchHHHH
Confidence 0000 1110 0111111223344433222222 33344444333222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCcccch--hcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCcccccc
Q 001968 322 ENANEASKKLLNEVLPSVFYVMQNCEVDTT--FSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNN 399 (989)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~ 399 (989)
+++.+++.+.+.+.++.+++.. ..+++|+..+... .+....+..++..+++..++.-|. |.+.+
T Consensus 243 --------~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mt-e~~~D-- 308 (1075)
T KOG2171|consen 243 --------PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMT-EEEDD-- 308 (1075)
T ss_pred --------HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcC-Ccccc--
Confidence 4677889999999999877662 3455555554433 222222334456666666665443 22221
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhh
Q 001968 400 LDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR 479 (989)
Q Consensus 400 ~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~ 479 (989)
.+|.++++.||++.-..+|.....+-+-.+.++|+.+++.+.+.++..+++ .+|..+.|+|.++++++|||.+. +
T Consensus 309 ~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EGc~~~-m- 383 (1075)
T KOG2171|consen 309 DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS---TEWKERHAALLALSVIAEGCSDV-M- 383 (1075)
T ss_pred hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcccHHH-H-
Confidence 256554332222212345655555555567889999999999999998877 89999999999999999999874 2
Q ss_pred cccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh-----ccCchHHHHHHhhcccCCCCCCchhhhhHHHH
Q 001968 480 TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE-----HTQYIPVVLAAFLDERGIHHPNVHVSRRASYL 554 (989)
Q Consensus 480 ~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~-----~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~a 554 (989)
...+++++++++ +...+|||.|+..++.++|+.+.-|.. |.+.+++.|-..++ ...+++|+.+|+.+
T Consensus 384 --~~~l~~Il~~Vl--~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld----~~~~~rV~ahAa~a 455 (1075)
T KOG2171|consen 384 --IGNLPKILPIVL--NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD----STQNVRVQAHAAAA 455 (1075)
T ss_pred --HHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc----ccCchHHHHHHHHH
Confidence 247889999888 566789999998888899999987754 45666666665555 22467999999999
Q ss_pred HHHHHHHhhh-cchhhHHHHHHH-hHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHH
Q 001968 555 FMRVVKLLKA-KLVPFIENILQS-LQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPL 632 (989)
Q Consensus 555 l~~l~~~~~~-~l~p~~~~il~~-l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl 632 (989)
+..|.+.|.+ .+.||++.||+. +..+..... +..+..+.-|||++..+.. +...+|.+.+|+-+
T Consensus 456 l~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~-----------~~v~e~vvtaIasvA~AA~---~~F~pY~d~~Mp~L 521 (1075)
T KOG2171|consen 456 LVNFSEECDKSILEPYLDGLMEKKLLLLLQSSK-----------PYVQEQAVTAIASVADAAQ---EKFIPYFDRLMPLL 521 (1075)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHHHHHHh---hhhHhHHHHHHHHH
Confidence 9999999975 668999999994 444443221 2346667777887777643 67888988887655
Q ss_pred HHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhc-CCCChhHhHH
Q 001968 633 CQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVV-FPKVEPLRCK 711 (989)
Q Consensus 633 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~e~ 711 (989)
..-+++ .. + ++.+.+ + ...+.|++-++.+++.. .+.+.-.++++++..+... ...+...+++
T Consensus 522 ~~~L~n----~~---~-~d~r~L-r-gktmEcisli~~AVGke-------~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 522 KNFLQN----AD---D-KDLREL-R-GKTMECLSLIARAVGKE-------KFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HHHHhC----CC---c-hhhHHH-H-hhHHHHHHHHHHHhhhh-------hhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 544333 21 1 222222 1 34578888888887742 4678888888888776522 2445788999
Q ss_pred HHHHHHHHHhhhcccccCchHHHHHHHHccCChh---------------------------------------HHHHHHH
Q 001968 712 VTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK---------------------------------------EMAGFLV 752 (989)
Q Consensus 712 ~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~---------------------------------------~~~~~L~ 752 (989)
...+|.||++++|++|.||+|.+++.++...+.+ +-.+...
T Consensus 585 ~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~ 664 (1075)
T KOG2171|consen 585 MIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACE 664 (1075)
T ss_pred HHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHH
Confidence 9999999999999999999999999888542100 0122334
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-C
Q 001968 753 LLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPK-S 831 (989)
Q Consensus 753 l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~-~ 831 (989)
.++.+....|..+.|++.+.+. ++ ...+ .+--|-.+|+++...+-.+++........-+. -
T Consensus 665 ~Lv~~a~~lk~~F~pYve~v~~-l~---v~~l--------------~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l 726 (1075)
T KOG2171|consen 665 ALGEYAKELKEAFAPYVEQVVE-LM---VPLL--------------KFYFHDGVRKAAAESMPQLLTCALKACQGGPEYL 726 (1075)
T ss_pred HHHHHHHhhhhhhhhHHHHHHH-HH---HHHH--------------HhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 4445555556667777776665 21 1111 22345567888887777666532211110011 1
Q ss_pred cCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHH---Hhhh---hhhh--hhhccCCC
Q 001968 832 RGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMI---EAFA---MNCC--LYSVLDKS 903 (989)
Q Consensus 832 ~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~--~~~~~~~~ 903 (989)
++..+.+....+....+.+++++.-+-+..+.+.++..|... -.-.+.++... .++. ..++ +.--....
T Consensus 727 ~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~---L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed 803 (1075)
T KOG2171|consen 727 KQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC---LNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEED 803 (1075)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc---CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 334455555555555567888888777888888887776431 11123233221 1111 1111 10000011
Q ss_pred CCcccc-----hhhHhHHHHHHHHHHHHHHHhHHHHHHH
Q 001968 904 FEFGDA-----NTLVLFGEIVLAQKVMYEKFGNDFLVHF 937 (989)
Q Consensus 904 f~~~d~-----~~~~~~~ei~~~l~~~~~~~~~~~l~~~ 937 (989)
++..+. +...+++++.+++.++.+.++.+|..+|
T Consensus 804 ~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f 842 (1075)
T KOG2171|consen 804 DDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFF 842 (1075)
T ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHH
Confidence 222111 1225888999999889998888776544
No 6
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-43 Score=408.05 Aligned_cols=900 Identities=16% Similarity=0.262 Sum_probs=571.5
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l 82 (989)
++.+|+...++|. ++++.|.+|+++|++||..|++|..|..+|..++++++||||+++|++.|+++|+.+|.++|.++
T Consensus 11 ~lldavv~~~~~~--~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~gl 88 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPE--GSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGL 88 (1041)
T ss_pred HHHHhHHHHhCcc--cchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHH
Confidence 4778888889885 58999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 001968 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDEL 162 (989)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Eev 162 (989)
|+++++.+... +.+ .......+++++|++.+++.+++++||..||+|++++.+.++.++..+++.+.||+.|.||+
T Consensus 89 k~~v~~~~~~~---~~~-~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdv 164 (1041)
T KOG2020|consen 89 KNYVLTLIIEA---SPD-EDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEV 164 (1041)
T ss_pred HHHHHHHHhhc---CCc-HhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 99999988764 111 00012478999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHH
Q 001968 163 ISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFEL 242 (989)
Q Consensus 163 ~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~ 242 (989)
++++....++.|...++..+... +..++.++..+..+ +++. +..++|.++..|++|||++.+..++.+..++..
T Consensus 165 --f~~ss~~~~q~~~~il~~~~~~~-f~~i~~l~~~~~~~--a~~~-~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~ 238 (1041)
T KOG2020|consen 165 --FDFSSSELTQQKIIILKNLLENE-FQQIFTLCSYIKEK--ANSE-LLSATLETLLRFLEWIPLGYIFETNILELLLNK 238 (1041)
T ss_pred --hcccchHHHhhhHHHHHHHhhHH-HHHHHHHHHHHHhh--hhhH-HHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHh
Confidence 44555566777777777777775 89999999887764 3344 999999999999999999999988888777766
Q ss_pred HHhcCCChhHHhHHHHHHHHHHhcCCCcc-hhh-hHhhh-----------hhhhhhhccccCCcch-HHHHHHHHHHHHH
Q 001968 243 ILADGLPEQFRGAAVGCVLAVVSKRMDPQ-SKL-NLLQT-----------LQISRVFGLVSEDGES-ELVSKVAALLTGY 308 (989)
Q Consensus 243 l~~~~~~~~~~~~a~~~l~~i~~~~~~~~-~k~-~li~~-----------l~l~~~~~~~~~~~d~-~~~~~~~~l~~~~ 308 (989)
+. +.+.+|..|++||.++++++.... .+. .+.+. +++.+++... .+.|. .|.+.++.+++.+
T Consensus 239 ~l---n~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~-~~~dq~~fi~~l~~~l~~f 314 (1041)
T KOG2020|consen 239 FL---NAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYSSL-SDEDQDSFIEKLAQFLSLF 314 (1041)
T ss_pred cc---chHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhhcc-cHhHHHHHHHHHHHHHHHH
Confidence 64 579999999999999999865321 111 12211 1122232222 23444 8999999999999
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcC-cccchhcHHHHHHHHHHHhccC-CCC---------------
Q 001968 309 AMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNC-EVDTTFSIVQFLSGYVATMKSL-SPL--------------- 371 (989)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-~~~--------------- 371 (989)
+..++..++. ...+. ..+......+++....++ ++.. .+...|..++..+... +|+
T Consensus 315 ~~~~~~lle~-~~~~~----~~~~~~~~~li~i~~~~~se~~~--~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~r 387 (1041)
T KOG2020|consen 315 FEQHIALLES-SLSQR----PVLLEALLELILISTIEPSEIFK--ICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSR 387 (1041)
T ss_pred HHHHHHHHcC-chhhh----hHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHHHhhhcccccccccccccccccchhc
Confidence 9998887754 11010 012223333332222222 1211 3556666666553221 111
Q ss_pred ----hHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHH---------HHHHHHHHHHHHHHHHHhhChHHHHH
Q 001968 372 ----KEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEED---------RMVEYRKDLLVLLRSVGRVAPEVTQV 438 (989)
Q Consensus 372 ----~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~---------~f~~~R~~l~~~l~~i~~i~~~~~l~ 438 (989)
...+..++.++--..+.+|.-|+..- ..+ .+... +|..+-+.+.+.+...+.++...+-.
T Consensus 388 i~~rk~~y~~~~~~~r~l~l~~m~~Pe~vl----ive---~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~ 460 (1041)
T KOG2020|consen 388 IDFRKSIYQEFLSKLRLLRLERMAKPEEVL----IVE---NEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEK 460 (1041)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCchhee----EEe---chHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhh
Confidence 12234555555556666777776542 011 11111 12222233344444444444444444
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhc-ccccHHHHHHHHHhCCCCCCCCchH---HHHHHHHHH
Q 001968 439 FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT-GAGHLSELVPMLLQTKLPCHSNRLV---ALVYLETVT 514 (989)
Q Consensus 439 ~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~-~~~~l~~ll~~ll~~~~~~~~~~~v---~~~~~~~lg 514 (989)
++...+...+.+ ..-.|+.+-.-+++++.++-...+...+. -...+.++++. .. ......+.++ .++| ++|
T Consensus 461 ~~~~kl~~~l~~-~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l-~E-~~~~kdn~avi~~Ni~~--vv~ 535 (1041)
T KOG2020|consen 461 IMTEKLAIQLDG-DEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNL-CE-RKRGKDNKAVIASNIMY--VVG 535 (1041)
T ss_pred hhhHhHHHHhhH-HHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HH-HhhcCCchhHHHHHHHH--Hhc
Confidence 444333332221 11234444444444443333222211000 01122223221 11 1122235555 4888 899
Q ss_pred hhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc--------hhhHHHHHHHhHhhhhcccc
Q 001968 515 RYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--------VPFIENILQSLQDTIARFTS 586 (989)
Q Consensus 515 ~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l--------~p~~~~il~~l~~~l~~~~~ 586 (989)
+|++|+..|+.+|+++...++. .+|..+++|+.+||.+|.++...|+.++ .||.+.++..+...+....
T Consensus 536 q~p~Fl~~h~~~Lkt~~~~L~e--fmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~- 612 (1041)
T KOG2020|consen 536 QYPRFLKAHWKFLKTVVHKLFE--FMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQ- 612 (1041)
T ss_pred ccchHHHHHHHHHHHHHHHHHH--HHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCch-
Confidence 9999999999999999999998 9998889999999999999999999853 2788888777766665332
Q ss_pred CCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCc-hhhhHHHHHHHHHHHH
Q 001968 587 MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPE-ESTAKFANIQQIIMAI 665 (989)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~-~~~~~~~~i~~~l~~i 665 (989)
+.++...|+++|.+|+... +++.+..+....+.-....|.+.+.+.....+. +++..+..+.+++..+
T Consensus 613 ----------~~q~~~~~~al~~~V~~~~-~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~ 681 (1041)
T KOG2020|consen 613 ----------PQQRHTFYEALGLMVSAEI-DPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTN 681 (1041)
T ss_pred ----------HHHHHHHHHHHHHHHHHhC-CHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhH
Confidence 2356788999998777754 678888899988888888888876554321111 2334444555677778
Q ss_pred hhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHh-------hc---C-CCChhHhH--HHHHHHHHHHhhhc-c----cc
Q 001968 666 NALSKGFNERLVTSSRPAIGLMFKQTLDVLLQIL-------VV---F-PKVEPLRC--KVTSFIHRMVDTLG-A----SV 727 (989)
Q Consensus 666 ~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~---~-~~~~~i~e--~~~~~~~~~~~~l~-~----~~ 727 (989)
+++.+..+.++.+. ...++-+...++.... .. . ...+.++. .+..-....+..++ . ++
T Consensus 682 ~~~~~sl~~~f~~~----~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~ 757 (1041)
T KOG2020|consen 682 SRALTSLGSTFVPQ----LGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDL 757 (1041)
T ss_pred HHHHHhcCcccccc----cccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhH
Confidence 88877777665333 2223333333332111 10 0 01122211 01111111122221 1 11
Q ss_pred --cCchHHHHHHHHccC----ChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHH
Q 001968 728 --FPYLPKALEQLLAES----EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIR 801 (989)
Q Consensus 728 --~p~l~~l~~~ll~~~----~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 801 (989)
.-++|+.+...+-++ ...+.+..+.+.+.++.++|.-+...++.++.+++.+.+.+++. ++.
T Consensus 758 ~~~~~~~~~~~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~i~~~~~~i~~~v~~c~l~m~~~------------d~q 825 (1041)
T KOG2020|consen 758 YLLMLVPPLLDAVLFDYLDNVPDYRENEVLSLNATIVPKLGEFIPAELPLINIAVLECTLEMINK------------DFQ 825 (1041)
T ss_pred HHHhhhhHHHHHHHHHHHccCcchhcchHHHhhhhhhhhhhhHhhhhccHHHHHHHhhhhhcccc------------ccc
Confidence 123344333322222 12344677777788888899887777778888999998888876 567
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccc-cCCCC-cCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCc
Q 001968 802 EVQELQRTLYTFLHVIATHDLSSVF-LSPKS-RGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKV 879 (989)
Q Consensus 802 ~~pd~~~~~~~ll~~~~~~~~~~~~-~s~~~-~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~ 879 (989)
++||++..|+.++..+...+++.+. +++.+ +...+.+.+.+ .|..+.+.+.++..+..+.+...... ....
T Consensus 826 e~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f-----~h~~r~i~~~~l~~l~~l~k~~~~~~--~~~~ 898 (1041)
T KOG2020|consen 826 EYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAF-----HHTMRNIAENGLNILLELLKNLAEME--KFAN 898 (1041)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHH-----HhhhhhhhhhhHHHHHHHHHHHHHhh--HHHH
Confidence 9999999999999999998654443 33222 44556666655 69999999999999999999886531 1123
Q ss_pred chHHHHHHHhhhhhh--hhhhccCCCCC-----------c-ccchhhHhHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC
Q 001968 880 PGFQSFMIEAFAMNC--CLYSVLDKSFE-----------F-GDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSA 945 (989)
Q Consensus 880 ~~~~~~~~~~~~~~~--~~~~~~~~~f~-----------~-~d~~~~~~~~ei~~~l~~~~~~~~~~~l~~~~~~~~P~~ 945 (989)
..|.+|+...+.... +.....+.+|. + .+++....+.....+.+ +..+..+.+..++...||
T Consensus 899 ~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~L~~~~l~~l~~~~~~~~~l~~~~~v~~--n~~~L~e~i~~~l~~~f~-- 974 (1041)
T KOG2020|consen 899 AFYQTYFLSLLQKIIAVLTDTDHKAGFTKQVLKLQFLFRLVESAKLHTPLLQGNVVHG--NQAFLREYIYGLLRPAFP-- 974 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcchHHHHHHHHHHHHHHhhhHHHhhccccccch--HHHHHHHHHHHhhhhhch--
Confidence 344444433221110 01100011111 1 01110000000000000 112333444455567888
Q ss_pred CCCHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHh
Q 001968 946 HCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKLRV 980 (989)
Q Consensus 946 ~~~~~~~~~f~~~l~~--~~~~~f~~~~~~f~~~~r~ 980 (989)
+.++++.+.|...++. .+...||+.++| .+.++
T Consensus 975 ~~~~~~v~~~~~~~~~~~~~~~~~k~~~~d--~~~~e 1009 (1041)
T KOG2020|consen 975 NLTDEQVRAFDIGLFDECKDVSPFKDHVRD--VQIKE 1009 (1041)
T ss_pred hhchHHHHHHhHHHHHHhcccchhhcchhh--HHHHH
Confidence 7778999999999887 688899999999 44444
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=370.10 Aligned_cols=680 Identities=16% Similarity=0.230 Sum_probs=471.8
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCC--chHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCN--IVQVQFWCLQTLSEVVRVKYTSMSSEERN 80 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~--~~~vr~fa~~~L~~~I~~~w~~l~~~~~~ 80 (989)
|+.+.++...+| |++.|+.++..|++++..|+.-++...+|...+ +..+|-.|..+||+.++-+|++++.+...
T Consensus 14 ql~~lLk~s~Sp----n~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~ 89 (885)
T KOG2023|consen 14 QLAQLLKNSQSP----NSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD 89 (885)
T ss_pred HHHHHHHhccCC----ChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHH
Confidence 344444444554 899999999999999999999999888887644 35799999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHH
Q 001968 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLD 159 (989)
Q Consensus 81 ~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~ 159 (989)
++|..++.-+.. .++.||+..+.+++.|+...+-+.||+.++.+.+.+.+.. .+++..+..|..++
T Consensus 90 yiKs~~l~~lgd-------------~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 90 YIKSECLHGLGD-------------ASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKIC 156 (885)
T ss_pred HHHHHHHhhccC-------------chHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 999998876653 3569999999999999998888999999999999998765 78888999999999
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHH
Q 001968 160 DELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL 239 (989)
Q Consensus 160 Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l 239 (989)
|+....- .+ +. .++.-+.| +|+.++++ ++.+|.++..++.|++.|+---
T Consensus 157 EDsa~~l-ds--~~---~~rpl~~m----ipkfl~f~-------~h~spkiRs~A~~cvNq~i~~~-------------- 205 (885)
T KOG2023|consen 157 EDSAQFL-DS--DV---LTRPLNIM----IPKFLQFF-------KHPSPKIRSHAVGCVNQFIIIQ-------------- 205 (885)
T ss_pred hhhHHHH-hh--hc---ccCchHHh----HHHHHHHH-------hCCChhHHHHHHhhhhheeecC--------------
Confidence 9874321 00 00 01111122 44444322 2456677777777766543210
Q ss_pred HHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHh-h
Q 001968 240 FELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVK-R 318 (989)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~-~ 318 (989)
++-....++-+.+. ++ ++.+++|+++.+++|+- ++-+++..+ +
T Consensus 206 ----------~qal~~~iD~Fle~---------------------lF-alanD~~~eVRk~vC~a----lv~Llevr~dk 249 (885)
T KOG2023|consen 206 ----------TQALYVHIDKFLEI---------------------LF-ALANDEDPEVRKNVCRA----LVFLLEVRPDK 249 (885)
T ss_pred ----------cHHHHHHHHHHHHH---------------------HH-HHccCCCHHHHHHHHHH----HHHHHHhcHHh
Confidence 00001112222111 11 13467888999988884 334444332 2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCcccc-
Q 001968 319 LNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYR- 397 (989)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~- 397 (989)
+. ++++.+++.+++...+.+-+...+.-+||..+... +-......+++.+++.+++.+|+|.++..
T Consensus 250 l~---------phl~~IveyML~~tqd~dE~VALEACEFwla~aeq----pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 250 LV---------PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ----PICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred cc---------cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC----cCcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 22 57888899999888776544444778888877642 22345678999999999999999965431
Q ss_pred ------ccccc-----------------------ccc----CChhHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHH
Q 001968 398 ------NNLDV-----------------------LDK----IGIEEEDRMV--EYRKDLLVLLRSVGRVAPEVTQVFIRN 442 (989)
Q Consensus 398 ------~~~~~-----------------------~~~----~~~~~~~~f~--~~R~~l~~~l~~i~~i~~~~~l~~i~~ 442 (989)
++... .++ +++||++.|. ..|++....++..+++-++.+++.+.+
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~P 396 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLP 396 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHH
Confidence 10000 000 0011122232 489999999999999999999999999
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchH-HHHHHHHHHhhHhhhh
Q 001968 443 SLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLV-ALVYLETVTRYMKFIQ 521 (989)
Q Consensus 443 ~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v-~~~~~~~lg~y~~~l~ 521 (989)
.+...+++ ..|..+||++.++++++|||-.. -..++|++++.++ ...++..|.| .+++| +++||++|+.
T Consensus 397 lLk~~L~~---~~W~vrEagvLAlGAIAEGcM~g----~~p~LpeLip~l~--~~L~DKkplVRsITCW-TLsRys~wv~ 466 (885)
T KOG2023|consen 397 LLKEHLSS---EEWKVREAGVLALGAIAEGCMQG----FVPHLPELIPFLL--SLLDDKKPLVRSITCW-TLSRYSKWVV 466 (885)
T ss_pred HHHHHcCc---chhhhhhhhHHHHHHHHHHHhhh----cccchHHHHHHHH--HHhccCccceeeeeee-eHhhhhhhHh
Confidence 99988765 88999999999999999999653 4578899999887 3445667888 46666 9999999986
Q ss_pred hc--cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcc
Q 001968 522 EH--TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSED 599 (989)
Q Consensus 522 ~~--~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~ 599 (989)
.. .+|+.+++.-++. .+-+++.+|+.+||.||..+-++..+.|+||++.|++++...+..... ..
T Consensus 467 ~~~~~~~f~pvL~~ll~--~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~-----------KN 533 (885)
T KOG2023|consen 467 QDSRDEYFKPVLEGLLR--RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQK-----------KN 533 (885)
T ss_pred cCChHhhhHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh-----------cc
Confidence 54 4799999999986 666788999999999999999999999999999999999888864432 34
Q ss_pred hhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCC
Q 001968 600 GSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTS 679 (989)
Q Consensus 600 ~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~ 679 (989)
-+.+|.|||++..+.+ ..=.+..|++.+++|++++|+.+-+ +|+ ++.-++.|+++++++++..+
T Consensus 534 LlILYDAIgtlAdsvg-~~Ln~~~YiqiLmPPLi~KW~~lsd--------~DK----dLfPLLEClSsia~AL~~gF--- 597 (885)
T KOG2023|consen 534 LLILYDAIGTLADSVG-HALNKPAYIQILMPPLIEKWELLSD--------SDK----DLFPLLECLSSIASALGVGF--- 597 (885)
T ss_pred eehHHHHHHHHHHHHH-HhcCcHHHHHHhccHHHHHHHhcCc--------ccc----hHHHHHHHHHHHHHHHhccc---
Confidence 5788999999998854 2335678999999999999998742 122 23455677777777666544
Q ss_pred CcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHHHHHHHHHHHH
Q 001968 680 SRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLIC 759 (989)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~ 759 (989)
.|-..++|++++.++...++.... .-.+ | -...++..-+.+.|.+++.++.
T Consensus 598 -~P~~~~Vy~Rc~~il~~t~q~~~~-----------------~~~~---~--------~~~~pdkdfiI~sLDL~SGLae 648 (885)
T KOG2023|consen 598 -LPYAQPVYQRCFRILQKTLQLLAK-----------------VQQD---P--------TVEAPDKDFIIVSLDLLSGLAE 648 (885)
T ss_pred -cccCHHHHHHHHHHHHHHHHHHHh-----------------ccCC---c--------cccCCCcceEEEeHHHHhHHHH
Confidence 223467888888777643321100 0000 0 0012233334566788899999
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHH
Q 001968 760 KFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIM 839 (989)
Q Consensus 760 ~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il 839 (989)
..|..+.+.+.+- .+.+-.+..+.. +-||+|++.|.+++.+.+.|+..+. |.....+
T Consensus 649 gLg~~ie~Lva~s--nl~~lll~C~~D---------------~~peVRQS~FALLGDltk~c~~~v~------p~~~~fl 705 (885)
T KOG2023|consen 649 GLGSHIEPLVAQS--NLLDLLLQCLQD---------------EVPEVRQSAFALLGDLTKACFEHVI------PNLADFL 705 (885)
T ss_pred HhhhchHHHhhhc--cHHHHHHHHhcc---------------CChHHHHHHHHHHHHHHHHHHHhcc------chHHHHH
Confidence 8888876655432 122223333332 5699999999999999999866553 3455555
Q ss_pred HHHHHhhcCCCChhhhhHHHHHHHHHHHHhhC
Q 001968 840 QLLLYTSCNHKDYLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 840 ~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~ 871 (989)
..+.+.. +....++.-.|+-.+.++-.+.+.
T Consensus 706 ~~lg~Nl-~~~~isv~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 706 PILGANL-NPENISVCNNAIWAIGEIALKMGL 736 (885)
T ss_pred HHHhhcC-ChhhchHHHHHHHHHHHHHHHhch
Confidence 5442211 222345555566666666655543
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-32 Score=298.43 Aligned_cols=732 Identities=14% Similarity=0.184 Sum_probs=447.2
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCc--hHHHHHHHhccCC-chHHHHHHHHHHHHHHh-----------hh
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPS--ICRICIEKLSLCN-IVQVQFWCLQTLSEVVR-----------VK 70 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~--~w~~~~~lL~~~~-~~~vr~fa~~~L~~~I~-----------~~ 70 (989)
.+++....+| |+..|++|+++|++++++.- ......+.|.+.+ ++++|..|+.+|||.+. .+
T Consensus 4 ~~~le~tlSp----D~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 4 LELLEKTLSP----DQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred HHHHHHHcCC----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 3444445665 89999999999999998644 3444445555544 46899999999999886 47
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCCc--hh
Q 001968 71 YTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKGS--MV 147 (989)
Q Consensus 71 w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~-~Wp~~~~~l~~~~~~~~--~~ 147 (989)
|-.++.|.|+++|+.++..+.. ..+...+..+++++.|+..+.|+ .||+++..+.+....++ .+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~-------------~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~ 146 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGS-------------PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMV 146 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCC-------------CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHH
Confidence 9999999999999999988774 24567789999999999999998 89999999999987654 35
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHhhcccccc
Q 001968 148 IDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMY--RSSDFEVCTGVLDCMRRYISWI 225 (989)
Q Consensus 148 ~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~--~~~~~~l~~~~L~~l~~~i~wi 225 (989)
.+..|+.+.+++|++. + +.+.++ .+.|+.- |.... ...+..++-.+++||-.-+.+.
T Consensus 147 k~~slealGyice~i~-------p----------evl~~~-sN~iLta---Iv~gmrk~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 147 KESSLEALGYICEDID-------P----------EVLEQQ-SNDILTA---IVQGMRKEETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred HHHHHHHHHHHHccCC-------H----------HHHHHH-HhHHHHH---HHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 6788999999999982 1 123333 4554432 22222 1345677888999998877776
Q ss_pred ccccccc---cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhh--Hhhhhhhhhh-hccccCCcchHHHH
Q 001968 226 DINLIAN---DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLN--LLQTLQISRV-FGLVSEDGESELVS 299 (989)
Q Consensus 226 ~~~~~~~---~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~--li~~l~l~~~-~~~~~~~~d~~~~~ 299 (989)
..+.-.+ +-++++.+..-+ .++.+++.+|+.||+.|++.+. ++++ +-+.| -.+ +.+.-+++| ++.-
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq--~~d~~i~~aa~~ClvkIm~LyY---~~m~~yM~~al--faitl~amks~~d-eVal 277 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQ--SPDEEIQVAAFQCLVKIMSLYY---EFMEPYMEQAL--FAITLAAMKSDND-EVAL 277 (859)
T ss_pred HHhhccHhhhceeeeeeeeccc--CCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHcCCcH-HHHH
Confidence 5332211 235555555544 3689999999999999998652 1111 11111 111 111222333 3332
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhH
Q 001968 300 KVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHA 379 (989)
Q Consensus 300 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 379 (989)
+--+++++++.|=. .+...+-+..+-...=...+|....+ ..++
T Consensus 278 QaiEFWsticeEEi-----------------------D~~~e~~e~~d~~~~p~~~~fa~~a~-------------~~v~ 321 (859)
T KOG1241|consen 278 QAIEFWSTICEEEI-----------------------DLAIEYGEAVDQGLPPSSKYFARQAL-------------QDVV 321 (859)
T ss_pred HHHHHHHHHHHHHH-----------------------HHHHHHHHHhhcCCCchhhHHHHHHH-------------hHhh
Confidence 22343333332211 01111111111000001222222111 1234
Q ss_pred HHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHH
Q 001968 380 GQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEV 459 (989)
Q Consensus 380 ~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~ 459 (989)
+-|++.+.+ .+++.++| || . --+..+..+.-.+....++..+++.+.+.+-+++ ++|+.+
T Consensus 322 P~Ll~~L~k---qde~~d~D-dW----n---------p~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~---pdwr~r 381 (859)
T KOG1241|consen 322 PVLLELLTK---QDEDDDDD-DW----N---------PAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN---PDWRNR 381 (859)
T ss_pred HHHHHHHHh---CCCCcccc-cC----c---------HHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC---cchhhh
Confidence 444444433 34443321 33 2 1245566666666666667777777777765544 999999
Q ss_pred HHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchH--HHHHHHHHHhhHhhhhh---ccCchHHHHHHh
Q 001968 460 EAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLV--ALVYLETVTRYMKFIQE---HTQYIPVVLAAF 534 (989)
Q Consensus 460 Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v--~~~~~~~lg~y~~~l~~---~~~~L~~vl~~l 534 (989)
|++.++++++-++-..... ...+++.++.++. ...++.-.| +..+ ++||.++++.. |..++.+++..+
T Consensus 382 eaavmAFGSIl~gp~~~~L---t~iV~qalp~ii~--lm~D~sl~VkdTaAw--tlgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKL---TPIVIQALPSIIN--LMSDPSLWVKDTAAW--TLGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred hHHHHHHHhhhcCCchhhh---hHHHhhhhHHHHH--HhcCchhhhcchHHH--HHHHHHhhchhhcccHhhhhHHHHHH
Confidence 9999888888777554322 2344555555442 222343334 3444 89999999864 678999999999
Q ss_pred hcccCCCCCCchhhhhHHHHHHHHHHHhhhc---------chhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHH
Q 001968 535 LDERGIHHPNVHVSRRASYLFMRVVKLLKAK---------LVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE 605 (989)
Q Consensus 535 ~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~---------l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~e 605 (989)
.. |+++ +|+|...+|++|..|++.|... ..|+.+.|+..+........ .++ ..-|...||
T Consensus 455 ~~--gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d----gnq----sNLR~AAYe 523 (859)
T KOG1241|consen 455 LE--GLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD----GNQ----SNLRSAAYE 523 (859)
T ss_pred HH--Hhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc----cch----hhHHHHHHH
Confidence 98 9984 6899999999999999988743 33788888888776554221 100 234667899
Q ss_pred HHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHH-HHHHhhhccCCCCCCcCCCcCch
Q 001968 606 AIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQI-IMAINALSKGFNERLVTSSRPAI 684 (989)
Q Consensus 606 ai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-l~~i~~i~k~~~~~~~~~~~~~~ 684 (989)
|++.+|.. .++..++.+..+..-.+.++.++++.... ..+|......++.. +.+++.+.+.+++. .
T Consensus 524 ALmElIk~---st~~vy~~v~~~~l~il~kl~q~i~~~~l--~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~--------~ 590 (859)
T KOG1241|consen 524 ALMELIKN---STDDVYPMVQKLTLVILEKLDQTISSQIL--SLADRAQLNELQSLLCNTLQSIIRKVGSD--------I 590 (859)
T ss_pred HHHHHHHc---CcHHHHHHHHHHHHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHHHHHHHHHHcccc--------c
Confidence 99999998 45788889999999999999999883221 12333344444443 46677776666542 3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC-Ch---hHHHHHHHHHHHHHHH
Q 001968 685 GLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES-EP---KEMAGFLVLLNQLICK 760 (989)
Q Consensus 685 ~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~-~~---~~~~~~L~l~~~li~~ 760 (989)
.++-.++|..++++++. .++..+.|.+...+..++..+|+.|..|+|.+.+.|.... +. .-....+++.|.+...
T Consensus 591 ~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred hhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766 5566666667777777777777777777777666665544 11 1112234444444444
Q ss_pred hhhhhHHHHHHhHHHHHH-----------------------------------HHHhhcCCCCCCCCCCCCCHHHHHHH-
Q 001968 761 FNTLVHDILDEVFPAIAG-----------------------------------RIFNIIPRDAFPSGPGTNTEEIREVQ- 804 (989)
Q Consensus 761 ~~~~~~~~l~~~~~~l~~-----------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~p- 804 (989)
.++++.|+.+.++..+++ .+..++++.+.. .+..+++++.+|-
T Consensus 670 L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~-~~d~~~~~~~dYvd 748 (859)
T KOG1241|consen 670 LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSV-QTDPADDSMVDYVD 748 (859)
T ss_pred HHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-cCCCCcccHHHHHH
Confidence 444444444443333322 122222211100 1122334445544
Q ss_pred HHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCC-ChhhhhHHHHHHHHHHHHhhCC
Q 001968 805 ELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHK-DYLVRKACVQIFIRLIKDWCAR 872 (989)
Q Consensus 805 d~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~-~~~~~k~a~~~l~~~i~~~~~~ 872 (989)
++|++......-+++.- ..--=+...+|+++.|++.+-+.+.+.. +..+.++|++++.++...++.+
T Consensus 749 ~LRe~~leay~gi~qgl-k~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 749 ELREGILEAYTGIIQGL-KTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred HHHHHHHHHHHHHHHHh-hcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccc
Confidence 46666665555554421 1000011236789998887766665332 3567888999999999988753
No 9
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.2e-24 Score=227.59 Aligned_cols=598 Identities=13% Similarity=0.131 Sum_probs=352.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCc--hHHHHHHHhcc-CCchHHHHHHHHHHHHHHh-----------hhcCCCCHHHHHHHH
Q 001968 18 IDSMLKSQAVNFCQQIKETPS--ICRICIEKLSL-CNIVQVQFWCLQTLSEVVR-----------VKYTSMSSEERNLIR 83 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~~--~w~~~~~lL~~-~~~~~vr~fa~~~L~~~I~-----------~~w~~l~~~~~~~lr 83 (989)
+|+..|..|+..|.++++..- ...+..+.|.. ..+++.|..|+.+||+.+. .+|-.++.|.|+++|
T Consensus 17 pD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK 96 (858)
T COG5215 17 PDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVK 96 (858)
T ss_pred CCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHH
Confidence 389999999999999997543 22333344433 3458999999999999986 479999999999999
Q ss_pred HHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCCc--hhHHHHHHHHHHHHH
Q 001968 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKGS--MVIDMFCRVLNSLDD 160 (989)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~-~Wp~~~~~l~~~~~~~~--~~~~~~L~iL~~l~E 160 (989)
...+..+.+. .+-+-+..+++++.|+..+.|. .||+++..+....+.+. .+.--.+.++...+|
T Consensus 97 ~~al~aL~s~-------------epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 97 GMALRALKSP-------------EPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred HHHHHHhcCC-------------ccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 9998887753 3456689999999999999997 89999999999987654 233336777787777
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccc---cccHH
Q 001968 161 ELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN---DAFIP 237 (989)
Q Consensus 161 ev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~---~~~l~ 237 (989)
-. .++ .+.+..-..++..+...+.+ ..+..++-.+|+|+-.-+-++.-+.-.+ +-+++
T Consensus 164 s~-------~Pe----------~li~~sN~il~aiv~ga~k~--et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mq 224 (858)
T COG5215 164 SE-------APE----------DLIQMSNVILFAIVMGALKN--ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQ 224 (858)
T ss_pred cc-------CHH----------HHHHHhhHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhhe
Confidence 54 111 11121112233333333332 3456777889999877554544322111 23555
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhh-Hhhhhhhhhhhccc-cCCcchHHHHHHHHHHHHHHHHHHHH
Q 001968 238 LLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLN-LLQTLQISRVFGLV-SEDGESELVSKVAALLTGYAMEVLDC 315 (989)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~-li~~l~l~~~~~~~-~~~~d~~~~~~~~~l~~~~~~~~~~~ 315 (989)
+.+..-+ .++.++..+|..||+.|+..+.+- ++ .++. .+.....+. -+..| +....--+++++++.|
T Consensus 225 vvceatq--~~d~e~q~aafgCl~kim~LyY~f---m~~ymE~-aL~alt~~~mks~nd-~va~qavEfWsticeE---- 293 (858)
T COG5215 225 VVCEATQ--GNDEELQHAAFGCLNKIMMLYYKF---MQSYMEN-ALAALTGRFMKSQND-EVAIQAVEFWSTICEE---- 293 (858)
T ss_pred eeehhcc--CCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHhcCcch-HHHHHHHHHHHHHHHH----
Confidence 5555544 367889999999999888653210 00 0000 000000000 11122 2211112222222211
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCcc
Q 001968 316 VKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPM 395 (989)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~ 395 (989)
.+. . ++..+.+| ++.- +-..|.. ....+.++.++..+.+ ..+|
T Consensus 294 --eid---~-----~~e~~~~p---------e~p~--qn~~fa~-------------aav~dvlP~lL~LL~~---q~ed 336 (858)
T COG5215 294 --EID---G-----EMEDKYLP---------EVPA--QNHGFAR-------------AAVADVLPELLSLLEK---QGED 336 (858)
T ss_pred --Hhh---h-----HHHHhhcc---------cCch--hhcchHH-------------HHHHHHHHHHHHHHHh---cCCC
Confidence 000 0 11111111 1111 1111111 1123456666655554 3444
Q ss_pred ccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCch
Q 001968 396 YRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSE 475 (989)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~ 475 (989)
.++| ||.-. ...+..++--+.+.+++.+..+...+.+.+ .+.+|.++|++..+++++-++=..
T Consensus 337 ~~~D-dWn~s-------------maA~sCLqlfaq~~gd~i~~pVl~FvEqni---~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 337 YYGD-DWNPS-------------MAASSCLQLFAQLKGDKIMRPVLGFVEQNI---RSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred cccc-ccchh-------------hhHHHHHHHHHHHhhhHhHHHHHHHHHHhc---cCchhhhHHHHHHHhhhhhcCccH
Confidence 4322 44221 223444444455555555555555666544 458999999999887777665433
Q ss_pred hhhhcccccHHHHHHHHHhCCCCCCCCchHH-HHHHHHHHhhHhhhhh--cc-CchHHHHHHhhcccCCCCCCchhhhhH
Q 001968 476 EAMRTGAGHLSELVPMLLQTKLPCHSNRLVA-LVYLETVTRYMKFIQE--HT-QYIPVVLAAFLDERGIHHPNVHVSRRA 551 (989)
Q Consensus 476 ~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~-~~~~~~lg~y~~~l~~--~~-~~L~~vl~~l~~~~~l~~~~~~v~~~A 551 (989)
.. -...+++.++.+. +...++.-.|. .+.| ++|+.++++.. +| .+|+....+.+- |+.+ +|.+...+
T Consensus 400 ~~---lT~~V~qalp~i~--n~m~D~~l~vk~ttAw-c~g~iad~va~~i~p~~Hl~~~vsa~li--Gl~D-~p~~~~nc 470 (858)
T COG5215 400 DC---LTKIVPQALPGIE--NEMSDSCLWVKSTTAW-CFGAIADHVAMIISPCGHLVLEVSASLI--GLMD-CPFRSINC 470 (858)
T ss_pred HH---HHhhHHhhhHHHH--HhcccceeehhhHHHH-HHHHHHHHHHHhcCccccccHHHHHHHh--hhhc-cchHHhhh
Confidence 21 2246677777666 33345555552 3332 69999999865 34 679999999886 8874 68899999
Q ss_pred HHHHHHHHHHhhhc-------chhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHH
Q 001968 552 SYLFMRVVKLLKAK-------LVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDY 624 (989)
Q Consensus 552 ~~al~~l~~~~~~~-------l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~ 624 (989)
|+.+.+|+.+..+. +.|+.+.|+..+........ . ....+..+|+++|++|... ++.-.+.
T Consensus 471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~---N------e~n~R~s~fsaLgtli~~~---~d~V~~~ 538 (858)
T COG5215 471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL---N------ESNLRVSLFSALGTLILIC---PDAVSDI 538 (858)
T ss_pred HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc---c------chhHHHHHHHHHHHHHhhc---chhHHHH
Confidence 99999999877633 45677777777655443211 1 1245788999999999873 4777888
Q ss_pred HHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHH-HHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCC
Q 001968 625 LSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANI-QQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFP 703 (989)
Q Consensus 625 l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i-~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 703 (989)
+..+.+....++.++++-....-..+|.....++ ..++.++.++.+.++.. +.++-.++|+++.++++.-
T Consensus 539 ~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~--------ie~v~D~lm~Lf~r~les~- 609 (858)
T COG5215 539 LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD--------IEDVEDQLMELFIRILEST- 609 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cccHHHHHHHHHHHHHhcc-
Confidence 8899999999999888654321122443333332 34577888887777642 2234445566665555543
Q ss_pred CChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC
Q 001968 704 KVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (989)
Q Consensus 704 ~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~ 742 (989)
+...+-+-+...++.+..++|+.|..|+|.+++.|....
T Consensus 610 ~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al 648 (858)
T COG5215 610 KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL 648 (858)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 222334445555555555555555555555555544433
No 10
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.2e-25 Score=246.36 Aligned_cols=570 Identities=14% Similarity=0.184 Sum_probs=360.3
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCch-HHHHHHHHHHHHHHhhhcCC--------
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIV-QVQFWCLQTLSEVVRVKYTS-------- 73 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~-~vr~fa~~~L~~~I~~~w~~-------- 73 (989)
.+.+++.+..+| |++.|+.|++.|++++++|..-..+.++..+...+ .||.-|+..+||+|.+.|+.
T Consensus 5 ~l~~~~~~T~d~----d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 5 SLLQIFRATIDS----DAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred HHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 488888888886 89999999999999999999999999999887665 68999999999999999974
Q ss_pred -CCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCch-hHHHH
Q 001968 74 -MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSM-VIDMF 151 (989)
Q Consensus 74 -l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~-~~~~~ 151 (989)
+++++|..+|+.++..+.+ .|..+|.++..++-.|++.+||.+||++++.+...+++++. +.-..
T Consensus 81 ~I~e~dk~~irenIl~~iv~-------------~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~a 147 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQ-------------VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGA 147 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHh-------------CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHH
Confidence 5889999999999999885 48899999999999999999999999999999999998763 33334
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccc-cccccc
Q 001968 152 CRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISW-IDINLI 230 (989)
Q Consensus 152 L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~w-i~~~~~ 230 (989)
|-+|..|..- +++.+ ...|..+...|..- +|.|++...+++..-+..+.++.+.+|+.+++++.+ +|..++
T Consensus 148 Ll~l~qL~k~---ye~k~----~eeR~~l~~~v~~~-fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~ 219 (1010)
T KOG1991|consen 148 LLCLYQLFKT---YEWKK----DEERQPLGEAVEEL-FPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELS 219 (1010)
T ss_pred HHHHHHHHHH---Hhhcc----ccccccHHHHHHHH-HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhh
Confidence 4444444332 22222 12355677777775 999999999988754344567889999999887664 332222
Q ss_pred cccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCC-------cchhhh---------Hhhhhhhhhhhcccc----
Q 001968 231 ANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMD-------PQSKLN---------LLQTLQISRVFGLVS---- 290 (989)
Q Consensus 231 ~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~-------~~~k~~---------li~~l~l~~~~~~~~---- 290 (989)
.++.....++.+..|+++..+ |+++-. .+. .+.+++++..
T Consensus 220 ------------------~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~--~L~Rlf~Ryg~~~~ 279 (1010)
T KOG1991|consen 220 ------------------APETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALH--ILNRLFERYGSPSL 279 (1010)
T ss_pred ------------------CchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHH--HHHHHHHHhCCccc
Confidence 456666667777777776432 211110 111 1233333321
Q ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCC
Q 001968 291 -EDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLS 369 (989)
Q Consensus 291 -~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (989)
..+..+|.+.+. .+++..++ +.++..+-..-.--..+. .+++++..|+...-..
T Consensus 280 ~~~~y~~Fa~~f~---~n~~~~il-------------------e~~lk~l~~~~~~~yls~--rvl~~~l~fl~~~Vs~- 334 (1010)
T KOG1991|consen 280 VVPEYKEFAQMFL---KNFAQGIL-------------------EVFLKILEQWRQQLYLSD--RVLYYLLNFLEQCVSH- 334 (1010)
T ss_pred cchhhHHHHHHHH---HHHHHHHH-------------------HHHHHHHHHHHhcccCCH--HHHHHHHHHHHHhccH-
Confidence 111222322221 11121111 112222222222123555 6778887777653211
Q ss_pred CChHHHhHhHHHHHHHHHHHcccCcccccc---ccccccCChhHH---H---HHHH---HHHHHHHHHHHHHhhChHHH-
Q 001968 370 PLKEEQRLHAGQILEVILTQIRYDPMYRNN---LDVLDKIGIEEE---D---RMVE---YRKDLLVLLRSVGRVAPEVT- 436 (989)
Q Consensus 370 ~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~---~~~~~~~~~~~~---~---~f~~---~R~~l~~~l~~i~~i~~~~~- 436 (989)
....+++.+-++.++....||--.-.+ ..| + +||+| . -|++ -+....+++-.+++-.+..+
T Consensus 335 ---~~twkll~PHl~~ii~~vIFPlmc~~d~deelw-e--~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l 408 (1010)
T KOG1991|consen 335 ---ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELW-E--EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL 408 (1010)
T ss_pred ---HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHH-h--cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh
Confidence 123344555555555555444322110 022 1 12221 0 0111 11223455555555543333
Q ss_pred ---HHHHHHHHHHhhcC-CCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHh-CCCCCCCCch--HHHHH
Q 001968 437 ---QVFIRNSLANAVTF-SADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQ-TKLPCHSNRL--VALVY 509 (989)
Q Consensus 437 ---l~~i~~~l~~~~~~-~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~-~~~~~~~~~~--v~~~~ 509 (989)
+.|+.+++.++-++ ....+.++.|.||++++++++.+... +++...|..++. -.+|....|+ .+...
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~------s~~~~~mE~flv~hVfP~f~s~~g~Lrara 482 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK------SPYKSQMEYFLVNHVFPEFQSPYGYLRARA 482 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC------CchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence 45555666655443 45678999999999999999887643 233333332221 1233333333 34455
Q ss_pred HHHHHhhHhhhhhccCchHHHHHHhhcccCCC-CCCchhhhhHHHHHHHHHHHhhh---cchhhHHHHHHHhHhhhhccc
Q 001968 510 LETVTRYMKFIQEHTQYIPVVLAAFLDERGIH-HPNVHVSRRASYLFMRVVKLLKA---KLVPFIENILQSLQDTIARFT 585 (989)
Q Consensus 510 ~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~-~~~~~v~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~ 585 (989)
|+++++|++-=-.++..+..+++.... ++. +++..|+-.|+-|+..|..+|.. .+.|+++++|+.+..+.....
T Consensus 483 c~vl~~~~~~df~d~~~l~~ale~t~~--~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFKDPNNLSEALELTHN--CLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHH--HhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 558999996544567778888887776 776 66778999999999999999984 489999999999988875332
Q ss_pred cCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHH
Q 001968 586 SMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAI 665 (989)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i 665 (989)
.++-..++|.+ |..- .++-.++...++.-+.+.+.++++.....++.++...+ ...+++..+
T Consensus 561 -----------nd~Lt~vme~i---V~~f---seElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~i-aA~GiL~Ti 622 (1010)
T KOG1991|consen 561 -----------NDDLTNVMEKI---VCKF---SEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAI-AASGILRTI 622 (1010)
T ss_pred -----------hhHHHHHHHHH---HHHH---HHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHH-HHHHHHHHH
Confidence 24556667764 4442 36777888888888888888888752211111222222 245666777
Q ss_pred hhhccCCCC
Q 001968 666 NALSKGFNE 674 (989)
Q Consensus 666 ~~i~k~~~~ 674 (989)
+++...+..
T Consensus 623 ~Til~s~e~ 631 (1010)
T KOG1991|consen 623 STILLSLEN 631 (1010)
T ss_pred HHHHHHHhc
Confidence 777655554
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.1e-16 Score=172.19 Aligned_cols=738 Identities=13% Similarity=0.184 Sum_probs=371.7
Q ss_pred ChHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCC-chHHHHHHHHHHHHHHhhhcC-------
Q 001968 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCN-IVQVQFWCLQTLSEVVRVKYT------- 72 (989)
Q Consensus 1 m~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~-~~~vr~fa~~~L~~~I~~~w~------- 72 (989)
||++.+.++...+| ||+.|+.|++.|++.+.++..--..+.++.+++ ++++|.-|+..+|+.|+++|.
T Consensus 4 le~l~~~l~qTl~p----dps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 4 LETLANYLLQTLSP----DPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHHHhcCCC----CCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 67778888777776 899999999999999998775555667776665 579999999999999999995
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHH-H
Q 001968 73 SMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDM-F 151 (989)
Q Consensus 73 ~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~-~ 151 (989)
.+.+++++.||..++....+ .+.-|..+++.++..|++++||+.||++++|+.+.+++++-.... .
T Consensus 80 ~i~~~~~e~ikslIv~lMl~-------------s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gV 146 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLS-------------SPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGV 146 (960)
T ss_pred ccchhHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHH
Confidence 57888999999999998775 367899999999999999999999999999999999987743332 2
Q ss_pred HHHHHHHHHHH-hhccC-CCChhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccccccc
Q 001968 152 CRVLNSLDDEL-ISLDY-PRTADELTVAARIKDAMRQQ--CVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDI 227 (989)
Q Consensus 152 L~iL~~l~Eev-~~~~~-~~~~~~~~r~~~l~~~l~~~--~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~ 227 (989)
|.+ .+-+ ..+++ .|++.-- .++|-.+-.- -...++.-.....+.. +++....+..+..+-
T Consensus 147 L~t----ahsiFkr~R~efrSdaL~---~EIK~vLd~f~~Plt~Lf~~t~~l~~~~-~~~~~~l~~lf~vll-------- 210 (960)
T KOG1992|consen 147 LVT----AHSIFKRYRPEFRSDALW---LEIKLVLDRFAEPLTDLFRKTMELIQRH-ANDAAALNILFGVLL-------- 210 (960)
T ss_pred HHH----HHHHHHhcCcccccHHHH---HHHHHHHHhhHhHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHH--------
Confidence 222 2222 11221 1222111 1222211110 0222222222222111 112221111111100
Q ss_pred ccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHHHHHHHH
Q 001968 228 NLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTG 307 (989)
Q Consensus 228 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~ 307 (989)
++--+|..|. ..+-|++++.-++.......+...-+ .+.+. .++++......+-.-+|.
T Consensus 211 -------l~~klfysLn-~QDiPEFFEdnm~~wM~~F~k~l~~~-----------~p~le--~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 211 -------LICKLFYSLN-FQDIPEFFEDNMKTWMGAFHKLLTYD-----------NPLLE--SDEEEATVLDKLKAQICE 269 (960)
T ss_pred -------HHHHHHHhhh-cccchHHHHhhHHHHHHHHHHHHhcc-----------Ccccc--cCcccccHHHHHHHHHHH
Confidence 1111111111 11234444443333222211110000 00110 112222222222111222
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccch-----hcHHHHHHHHHHHhccCCCChHHHhHhHHHH
Q 001968 308 YAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTT-----FSIVQFLSGYVATMKSLSPLKEEQRLHAGQI 382 (989)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 382 (989)
++.-+.+.++.- + .+.+.+++.....++.....+.. ...+.|+...... +...+-+ .-...
T Consensus 270 i~~LY~~kYeEe----f----~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r----~~y~~~F--~~~~v 335 (960)
T KOG1992|consen 270 IFNLYATKYEEE----F----QPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR----PHYAELF--EGENV 335 (960)
T ss_pred HHHHHHHhhHHH----H----HhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh----hhhHhhh--cchHH
Confidence 333233333211 0 13555555555544433211111 0234554443322 1110000 01344
Q ss_pred HHHHHHHcccCcccc--ccccccccCChh------HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhc---CC
Q 001968 383 LEVILTQIRYDPMYR--NNLDVLDKIGIE------EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVT---FS 451 (989)
Q Consensus 383 l~~l~~k~~~p~~~~--~~~~~~~~~~~~------~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~---~~ 451 (989)
+..++.+...|.-.. ++.+.++++..| |..+...-|+...|+++-.+......+...+...++..++ ..
T Consensus 336 l~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~n 415 (960)
T KOG1992|consen 336 LAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKN 415 (960)
T ss_pred HHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccC
Confidence 445555554442110 000122210000 1111234567778888888776544444444443333332 23
Q ss_pred CCCChhHHHHHHHHHHHhcccCchhh--hhccc------c-cHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh
Q 001968 452 ADRNVEEVEAALTLLYALGESMSEEA--MRTGA------G-HLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE 522 (989)
Q Consensus 452 ~~~~w~~~Ea~l~~l~~i~e~~~~~~--~~~~~------~-~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~ 522 (989)
++.+|...+.++|++.+++-.-.... ....+ . ...++++.|.+.+ ..+||.+..- --+|.--+++
T Consensus 416 PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~--vn~~pilka~----aIKy~~~FR~ 489 (960)
T KOG1992|consen 416 PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPN--VNEFPILKAD----AIKYIYTFRN 489 (960)
T ss_pred CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCc--cccccchhhc----ccceeeeecc
Confidence 66899999999999998876533210 00000 1 1133445454311 2456766321 1133333455
Q ss_pred c--cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh---------cchhhHHHHHHHhHhhhhccccCCccc
Q 001968 523 H--TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA---------KLVPFIENILQSLQDTIARFTSMNYAS 591 (989)
Q Consensus 523 ~--~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~---------~l~p~~~~il~~l~~~l~~~~~~~~~~ 591 (989)
+ ++++-..++.+.. ++..+...|-+-|++++.++-.-|.+ .+.||+..++..+...+....
T Consensus 490 ql~~~~lm~~~p~li~--~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~------ 561 (960)
T KOG1992|consen 490 QLGKEHLMALLPRLIR--FLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG------ 561 (960)
T ss_pred cCChHHHHHHHHHHHH--hccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCc------
Confidence 4 5678888888886 88766778888899999887654443 456899999888886665321
Q ss_pred ccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccC
Q 001968 592 KELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKG 671 (989)
Q Consensus 592 ~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~ 671 (989)
..+..|++.+|..+++.. ++...++...++.-+.+-+.+..++ +.++..-. -+...++.+.+.
T Consensus 562 -----~~EneylmKaImRii~i~---~~~i~p~~~~~l~~Lteiv~~v~KN------Ps~P~fnH---YLFEsi~~li~~ 624 (960)
T KOG1992|consen 562 -----KAENEYLMKAIMRIISIL---QSAIIPHAPELLRQLTEIVEEVSKN------PSNPQFNH---YLFESIGLLIRK 624 (960)
T ss_pred -----ccccHHHHHHHHHHHHhC---HHhhhhhhhHHHHHHHHHHHHHhcC------CCCchhHH---HHHHHHHHHHHH
Confidence 246789999999999973 3445455444444333333333222 22333222 122333333332
Q ss_pred CCCCCcCCCcCc-hHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC---ChhHH
Q 001968 672 FNERLVTSSRPA-IGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES---EPKEM 747 (989)
Q Consensus 672 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~---~~~~~ 747 (989)
.+.. .|. ....-..++|++..++. .+-.+..-++...+.-+++.-+..+.+...++++.+++-- ....+
T Consensus 625 t~~~-----~~~~vs~~e~aL~p~fq~Il~--eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNi 697 (960)
T KOG1992|consen 625 TCKA-----NPSAVSSLEEALFPVFQTILS--EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNI 697 (960)
T ss_pred Hhcc-----CchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCc
Confidence 2221 111 22333455566666664 1223445567777777776665533333334444444311 11234
Q ss_pred HHHHHHHHHHHHHhhhhhH--HHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 001968 748 AGFLVLLNQLICKFNTLVH--DILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSV 825 (989)
Q Consensus 748 ~~~L~l~~~li~~~~~~~~--~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~ 825 (989)
+..+.++..++++-...+. +.+. ++++..-.++...+ + + ..-|.++.+++.+-....
T Consensus 698 palvrLl~aflk~g~~~~~~~~~l~----~iLGifqkLiaSka------~------D-----h~GF~LLn~i~~~~~~~~ 756 (960)
T KOG1992|consen 698 PALVRLLQAFLKTGSQIVEAADKLS----GILGIFQKLIASKA------N------D-----HHGFYLLNTIIESIPPNE 756 (960)
T ss_pred HHHHHHHHHHHhcCchhhcccccch----hHHHHHHHHhcCcc------c------c-----hhHHHHHHHHHhcCCHhh
Confidence 5555666666654222222 1222 22222222333211 0 1 123778888877643322
Q ss_pred ccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhh
Q 001968 826 FLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWC 870 (989)
Q Consensus 826 ~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~ 870 (989)
+ .++...+...+++-.....-+.-.|...-|+.-+....+
T Consensus 757 ~-----~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~ 796 (960)
T KOG1992|consen 757 L-----APYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKG 796 (960)
T ss_pred h-----hHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 2 446666666666555332233334556666665555544
No 12
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.4e-13 Score=147.24 Aligned_cols=789 Identities=17% Similarity=0.236 Sum_probs=416.3
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l 82 (989)
+++....-+|.. .|+..|.+|++-|.+|-.+|++.+-|.-+|..+..++.+..|+..|-+.+..+ ..+|-++|-.|
T Consensus 6 qLe~lCk~LY~s---~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldi 81 (1082)
T KOG1410|consen 6 QLESLCKDLYES---TDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDI 81 (1082)
T ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHH
Confidence 567778889986 59999999999999999999999999999999989999999999999888765 47999999999
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC------CChhhHHHHHHhhcCC-chhHHHHHHHH
Q 001968 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL------IWSSVFVDFLPQLNKG-SMVIDMFCRVL 155 (989)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~------~Wp~~~~~l~~~~~~~-~~~~~~~L~iL 155 (989)
|+++++++... .+.-++||...++++++.|-+..|-+ .+.+.+.++...++.+ ..++.+.++||
T Consensus 82 r~Yilnylat~---------~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 82 RNYILNYLATG---------APKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQIL 152 (1082)
T ss_pred HHHHHHHHhcC---------CCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHH
Confidence 99999999863 23567899999999999999999864 3567888888888766 57888899999
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CC-------HHHHHHHHHHhhc-ccc-
Q 001968 156 NSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRS---SD-------FEVCTGVLDCMRR-YIS- 223 (989)
Q Consensus 156 ~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~---~~-------~~l~~~~L~~l~~-~i~- 223 (989)
..|..|+...+.. ....+.+++...+|....-+|+.+..++|....+ .+ ..+.+.+++|+.- ||.
T Consensus 153 sqLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 153 SQLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Confidence 9999998554322 2234455566667776677888888888875321 11 2355677777652 121
Q ss_pred c------------ccc---ccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCC---CcchhhhHhhhh--hhh
Q 001968 224 W------------IDI---NLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRM---DPQSKLNLLQTL--QIS 283 (989)
Q Consensus 224 w------------i~~---~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~---~~~~k~~li~~l--~l~ 283 (989)
- ||. +.+.++..++++|+++.. -.+++...|++|++.+++-.. ...++-..++.| +..
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~s--lp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk 307 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHS--LPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVK 307 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhcc--CCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0 111 123345688999998863 468899999999999987643 234455555554 455
Q ss_pred hhhccccCCcchHHHHHHHHHHHHHHHH--HHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHH
Q 001968 284 RVFGLVSEDGESELVSKVAALLTGYAME--VLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGY 361 (989)
Q Consensus 284 ~~~~~~~~~~d~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 361 (989)
+++..-..-.|..-...+|+++.-+-.. ++|... .. ... +.+.-+.++-..-+.+-+... ...+++..+
T Consensus 308 ~il~np~~LsD~~nyHeFCRllaRlktNYQL~ELv~-v~--~Y~----e~irLiAeFTv~SLq~wefa~--nSvyyLlt~ 378 (1082)
T KOG1410|consen 308 RILENPQGLSDPANYHEFCRLLARLKTNYQLGELVK-VE--CYP----EVIRLIAEFTVTSLQHWEFAP--NSVYYLLTL 378 (1082)
T ss_pred HHHhCCcCCCCcchHHHHHHHHHHHHhhhhhHhhhc-cC--CcH----HHHHHHHHHHHHHHHhhhccc--chhHHHHHH
Confidence 5654422222333233455554433322 233211 10 000 111111222222233434333 333444444
Q ss_pred HHHh-------ccCCC-ChHHHhHhHHHHHHHHHH-H-----cccCccccccccccccCChhHHHHHHHHHHHHHHHHHH
Q 001968 362 VATM-------KSLSP-LKEEQRLHAGQILEVILT-Q-----IRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRS 427 (989)
Q Consensus 362 l~~~-------~~~~~-~~~~~~~~~~~ll~~l~~-k-----~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~ 427 (989)
|..+ |..+| +.+.+ .+.+..+.+. + ...+++.+++ .| +-+.-++ ..+-+-.
T Consensus 379 WqRmvaSVPyvk~~~phlLd~y---~PeIt~afi~SRl~sV~~ivrd~~d~P---Ld----d~~~~~q-----~le~l~~ 443 (1082)
T KOG1410|consen 379 WQRMVASVPYVKNTEPHLLDTY---CPEITKAFITSRLQSVEIIVRDGLDDP---LD----DTGAVQQ-----QLEQLAT 443 (1082)
T ss_pred HHHHHhcCCcccCCChHHHhhh---cHHHHHHHHHHHhhhhheecccCCCCc---ch----hhHHHHH-----HHHHhhh
Confidence 4443 33322 22222 2222222221 1 1122222211 11 1111111 1122222
Q ss_pred HHhhChHHHHHHH----HHHHH---HhhcCC--CCCChhHHHHHH-HHHHHhcccCchh-------h---hhcc-cccHH
Q 001968 428 VGRVAPEVTQVFI----RNSLA---NAVTFS--ADRNVEEVEAAL-TLLYALGESMSEE-------A---MRTG-AGHLS 486 (989)
Q Consensus 428 i~~i~~~~~l~~i----~~~l~---~~~~~~--~~~~w~~~Ea~l-~~l~~i~e~~~~~-------~---~~~~-~~~l~ 486 (989)
+|+.--+.+-..+ .+..+ ...++. ...+---.|+-| .+++.+|-.+... + +.++ ...+-
T Consensus 444 icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvl 523 (1082)
T KOG1410|consen 444 ICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVL 523 (1082)
T ss_pred hhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHH
Confidence 2222111111111 11111 111111 122233344433 2334444433211 0 1100 01122
Q ss_pred HHHHHHHhCCCCCCCCchH--H-HHHHHHHHhhH-------------------hhhh--hccCchHHHHHHhhcccCCC-
Q 001968 487 ELVPMLLQTKLPCHSNRLV--A-LVYLETVTRYM-------------------KFIQ--EHTQYIPVVLAAFLDERGIH- 541 (989)
Q Consensus 487 ~ll~~ll~~~~~~~~~~~v--~-~~~~~~lg~y~-------------------~~l~--~~~~~L~~vl~~l~~~~~l~- 541 (989)
++++ +..+++|...+..+ + +.+ +.+|- +-+. .+...|..++.+++. .+.
T Consensus 524 ql~n-lmdsr~~~~~n~rle~ail~f---~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~T--NLK~ 597 (1082)
T KOG1410|consen 524 QLVN-LMDSRLPLKGNERLELAILHF---LEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILT--NLKY 597 (1082)
T ss_pred HHHH-hhhcccchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh--hccc
Confidence 3333 23346666555443 2 222 22222 2221 134456666666665 332
Q ss_pred -CCCchhhhhHHHHHHHHHHHhh--hcc--hhhHHHHHHHhHhhhhccccCCcc--cccCCCCcchhHHHHHHHHHHccC
Q 001968 542 -HPNVHVSRRASYLFMRVVKLLK--AKL--VPFIENILQSLQDTIARFTSMNYA--SKELSGSEDGSHIFEAIGLLIGME 614 (989)
Q Consensus 542 -~~~~~v~~~A~~al~~l~~~~~--~~l--~p~~~~il~~l~~~l~~~~~~~~~--~~~~~~~~~~~~l~eai~~li~~~ 614 (989)
..++.|-++.-..|..++-... +.+ .+-+.-++..- . .+..+-+ +.++-....+...|+|+|.++-..
T Consensus 598 w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNH---T--~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d 672 (1082)
T KOG1410|consen 598 WGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNH---T--SEHFPFLGINIDLQDMRCRTTFYTALTRLLMVD 672 (1082)
T ss_pred ccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhhhhHhccc---c--hhhCcccccCccchhhhhHhHHHHHHHHHHhhc
Confidence 2345677777777766664321 111 11111111110 0 0000000 000000124567899999999873
Q ss_pred CCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCc-hHHHHHHHHH
Q 001968 615 DVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPA-IGLMFKQTLD 693 (989)
Q Consensus 615 ~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~-~~~~~~~~~~ 693 (989)
..+-...++..|.|+...++..++......-+++ +...-+.++..=+-.|+-++... .+..- +.-++...+|
T Consensus 673 ---~sede~~fe~fm~PLt~~fe~v~~~~~nn~f~ee-~vK~~liGL~RDLRGiA~A~~tk---tsy~~LFdWmYP~~mp 745 (1082)
T KOG1410|consen 673 ---LSEDEDMFERFMLPLTDAFEGVLQVFQNNCFEEE-QVKRILIGLCRDLRGIAFASNTK---TSYQMLFDWMYPEYMP 745 (1082)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHhccccccHH-HHHHHHHHHHHHhhhhhhhhccc---hHHHHHHHHhhhhHHH
Confidence 2344456788999999999987765543211111 11111222322222333222211 11111 2345667778
Q ss_pred HHHHHhhcCCCChhHhHHHHHHHHHHHhhhcc----cc-cCc-------hHHHHH----HHHccCCh----------hHH
Q 001968 694 VLLQILVVFPKVEPLRCKVTSFIHRMVDTLGA----SV-FPY-------LPKALE----QLLAESEP----------KEM 747 (989)
Q Consensus 694 ~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~----~~-~p~-------l~~l~~----~ll~~~~~----------~~~ 747 (989)
++....++|.+.+++..-+..++..++..-.+ ++ .|- ...++. .+++-.+- +.+
T Consensus 746 llq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI 825 (1082)
T KOG1410|consen 746 LLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGI 825 (1082)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCc
Confidence 88888889988877666555555555433211 11 110 111111 11111110 111
Q ss_pred -HHHHHHHHHHHHH---------hhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001968 748 -AGFLVLLNQLICK---------FNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVI 817 (989)
Q Consensus 748 -~~~L~l~~~li~~---------~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~ 817 (989)
.+|..+-+.++.. ||++ .+++.+...+.-+ -.+. .+|+.+|+-+.++||.|+..+
T Consensus 826 ~v~~siLk~AL~GnYv~FGVFrLYGD~---~l~daL~~fvKm~-lsIp-----------~sD~l~Y~Klsqsyy~llE~l 890 (1082)
T KOG1410|consen 826 SVCFSILKNALSGNYVNFGVFRLYGDS---ALDDALQTFVKML-LSIP-----------HSDLLSYRKLSQSYYNLLEVL 890 (1082)
T ss_pred eehHHHHHHHhhcCccccceeeeeCch---HHHHHHHHHHHHH-hcCC-----------HHHHHhHHHHHHHHhhHHHHH
Confidence 1232222333322 3332 2333333332221 1222 258889999999999999999
Q ss_pred HhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 818 ATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 818 ~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
.+.+.+-+. .-..+.|..++.++-.+. +.-|..+...|+..+-.++.-.
T Consensus 891 ~qdhm~Fi~--nL~~~vfm~ll~Si~sGL-t~lDt~v~ssccsslD~i~tYl 939 (1082)
T KOG1410|consen 891 TQDHMPFIT--NLEPDVFMYLLRSISSGL-TSLDTIVSSSCCSSLDTIVTYL 939 (1082)
T ss_pred Hhccchhhh--cCcHHHHHHHHHHHHhcc-chhhHHHHhHHHHHHHHHHHHH
Confidence 998876553 222457888888875544 5568888888888887776654
No 13
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.85 E-value=1.5e-20 Score=181.70 Aligned_cols=147 Identities=32% Similarity=0.596 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 001968 107 PAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQ 186 (989)
Q Consensus 107 ~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~ 186 (989)
|++|++|+|.+++.|++++||++||++++++++.+++++.+++++|++|+.++||+.+ +.+......|++.+++.|++
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~--~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITD--FRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT--SHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999965 34567788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHH
Q 001968 187 QCVEQIVRAWYDIVSMYRSSD-FEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCV 260 (989)
Q Consensus 187 ~~~~~i~~~~~~iL~~~~~~~-~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l 260 (989)
+ .+.|++++.++++...... +++...+|+|+++|++|++++.+.++++++.+++.+. +++++++|++||
T Consensus 79 ~-~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~----~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 N-SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQ----SPELREAAAECL 148 (148)
T ss_dssp H-HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTT----SCCCHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcC----CHHHHHHHHHhC
Confidence 7 9999999999999754433 8899999999999999999999999999999999884 788999999997
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.4e-13 Score=149.35 Aligned_cols=572 Identities=12% Similarity=0.125 Sum_probs=311.3
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhhcCC-----CCHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTS-----MSSE 77 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~w~~-----l~~~ 77 (989)
+.|...+..+. |+..|..|+..|.++++.|..-..|.+++... -+..||.-|+..++++|.+.|+. .+++
T Consensus 5 llqcf~qTlda----da~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 5 LLQCFLQTLDA----DAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHhcc----CcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 66666666664 89999999999999999999999999999876 34689999999999999999986 4556
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcC-CCChhhHHHHHHhhcCCch-hHHHHHHHH
Q 001968 78 ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYP-LIWSSVFVDFLPQLNKGSM-VIDMFCRVL 155 (989)
Q Consensus 78 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p-~~Wp~~~~~l~~~~~~~~~-~~~~~L~iL 155 (989)
++...|..+.+-+...+ ..+|...|+.+..++..|+..+|| +.|+ +++...+++.+++. ++-..|..+
T Consensus 81 ek~e~K~~lienil~v~---------l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl 150 (970)
T COG5656 81 EKSEAKKYLIENILDVF---------LYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCL 150 (970)
T ss_pred ccHHHHHHHHHHHHHHH---------hcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHH
Confidence 77777777777776642 235778888999999999999999 6999 99999999988763 222233333
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccc-cccccccccc
Q 001968 156 NSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISW-IDINLIANDA 234 (989)
Q Consensus 156 ~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~w-i~~~~~~~~~ 234 (989)
..+..- .+. +.+ .++..+...+.+- +|.+.+.-.++..+.+....++...+|+.++++.-. +|..+.
T Consensus 151 ~elfka---yRw---k~n-deq~di~~li~al-fpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~ls---- 218 (970)
T COG5656 151 EELFKA---YRW---KYN-DEQVDILMLITAL-FPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLS---- 218 (970)
T ss_pred HHHHHH---Hhh---hcc-chHhhHHHHHHHh-hHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHc----
Confidence 222221 111 111 1233344444443 666665554444421223457778888888765432 221111
Q ss_pred cHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCC-------cch----------hhhHhhhhhhhhhhccccCCcchHH
Q 001968 235 FIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMD-------PQS----------KLNLLQTLQISRVFGLVSEDGESEL 297 (989)
Q Consensus 235 ~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~-------~~~----------k~~li~~l~l~~~~~~~~~~~d~~~ 297 (989)
.++.....+.....|+++..+ |+. |-... ++.+.+++...-.-...
T Consensus 219 --------------a~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~y---nLyR~fqRy~k~s~~~~ 281 (970)
T COG5656 219 --------------AIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAY---NLYRSFQRYIKKSYKKS 281 (970)
T ss_pred --------------cchhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHH---HHHHHHHHhcchhHHHH
Confidence 233333344444445544321 110 00000 12222222110000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcC-cccchhcHHHHHHHHHHHhccCCCChHHHh
Q 001968 298 VSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNC-EVDTTFSIVQFLSGYVATMKSLSPLKEEQR 376 (989)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 376 (989)
.+.+....++++..++. .++.-+....... ..++ ..+||+..|+...-+. ++..
T Consensus 282 y~~f~~~f~t~vp~il~-------------------tffkqie~wgqgqLWlsd--~~LYfi~~Fve~cv~~----d~tw 336 (970)
T COG5656 282 YLSFYITFMTRVPMILA-------------------TFFKQIEEWGQGQLWLSD--IELYFIDFFVELCVDA----DQTW 336 (970)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHhhcCCeecch--HHHHHHHHHHHHHhhh----HhhH
Confidence 00011111111111111 1111111111111 2444 5778887777654322 2345
Q ss_pred HhHHHHHHHHHHHcccCcccccc--ccccccCChhHHHHHHH--------HHHHHH--HHHHHHHhhChHHHHH----HH
Q 001968 377 LHAGQILEVILTQIRYDPMYRNN--LDVLDKIGIEEEDRMVE--------YRKDLL--VLLRSVGRVAPEVTQV----FI 440 (989)
Q Consensus 377 ~~~~~ll~~l~~k~~~p~~~~~~--~~~~~~~~~~~~~~f~~--------~R~~l~--~~l~~i~~i~~~~~l~----~i 440 (989)
+++.+-++.++....||--...+ .+.++ +|++| ..+. +|.++. .++-.+..-.++.+++ |+
T Consensus 337 ~l~ePhlq~ii~~vIfPllc~see~eElfE--nDp~e-yirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~ 413 (970)
T COG5656 337 RLMEPHLQYIISGVIFPLLCLSEEEEELFE--NDPDE-YIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFL 413 (970)
T ss_pred hhhccHHHHHHHhhhhhhcCCChhhHHHHh--cCHHH-HHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 66777777777777666322110 01112 12221 1111 122222 2222233334555444 44
Q ss_pred HHHHHHhhcCCC-CCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhC-CCCCC--CCchHHHHHHHHHHhh
Q 001968 441 RNSLANAVTFSA-DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT-KLPCH--SNRLVALVYLETVTRY 516 (989)
Q Consensus 441 ~~~l~~~~~~~~-~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~-~~~~~--~~~~v~~~~~~~lg~y 516 (989)
...+.+.-.+.+ -.+.++.|.||+.+.++...+... +++..+|+..+-. .+|.. +.-......|+++.+|
T Consensus 414 ~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~------sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 414 LSILGQSAATPSNIDNARQAEGALRLLASIKSFITKM------SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred HHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccC------chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 444433322222 256899999999999998855432 3444444432211 12222 2233355666788888
Q ss_pred HhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh--hcchhhHHHHHHHhHhhhhccccCCcccccC
Q 001968 517 MKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK--AKLVPFIENILQSLQDTIARFTSMNYASKEL 594 (989)
Q Consensus 517 ~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~ 594 (989)
+.-++. +..+..+.+.... ++.+++..|+-.|+.|+.-|..+-. ..+..|++..|+++..+-....
T Consensus 488 eeDfkd-~~ill~aye~t~n--cl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe--------- 555 (970)
T COG5656 488 EEDFKD-NGILLEAYENTHN--CLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE--------- 555 (970)
T ss_pred HHhccc-chHHHHHHHHHHH--HHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc---------
Confidence 766653 4455555665554 6667778899999999999987654 4456899999998876643221
Q ss_pred CCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcC-----CchhhhHHHHHHHHHHHHhhhc
Q 001968 595 SGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLN-----PEESTAKFANIQQIIMAINALS 669 (989)
Q Consensus 595 ~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~-----~~~~~~~~~~i~~~l~~i~~i~ 669 (989)
.|--..++|++ ++. . +++-.++-..++.-+.+++-.+.+.....+ ..+|++ ....+++..+.++.
T Consensus 556 --iD~LS~vMe~f---Ve~--f-seELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKq--maasGiL~T~~smi 625 (970)
T COG5656 556 --IDPLSMVMESF---VEY--F-SEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQ--MAASGILRTIESMI 625 (970)
T ss_pred --chHHHHHHHHH---HHH--h-HHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHH--HHHHHHHHHHHHHH
Confidence 12334556654 333 1 255556666777777766555544322111 112222 22446666666666
Q ss_pred cCCCC
Q 001968 670 KGFNE 674 (989)
Q Consensus 670 k~~~~ 674 (989)
-.+..
T Consensus 626 LSlen 630 (970)
T COG5656 626 LSLEN 630 (970)
T ss_pred Hhccc
Confidence 55543
No 15
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.79 E-value=1.7e-18 Score=185.72 Aligned_cols=227 Identities=16% Similarity=0.337 Sum_probs=170.7
Q ss_pred cCchHHHHHHHHccCCh----hHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHH
Q 001968 728 FPYLPKALEQLLAESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREV 803 (989)
Q Consensus 728 ~p~l~~l~~~ll~~~~~----~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 803 (989)
..++|++++.++.+|.. .+.+++|++++.++.+.|+.+.+.++.++..++++|.+|+.+ |+.++
T Consensus 66 ~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~------------d~~~y 133 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINK------------DFEEY 133 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSS------------TSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh------------hhhhC
Confidence 36778888888888842 345999999999999999998899999999999999999986 45689
Q ss_pred HHHHHHHHHHHHHHHhcCCCccc-cCCCC-cCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcch
Q 001968 804 QELQRTLYTFLHVIATHDLSSVF-LSPKS-RGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPG 881 (989)
Q Consensus 804 pd~~~~~~~ll~~~~~~~~~~~~-~s~~~-~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~ 881 (989)
||+|..||.|+..++.+|+..++ +++.. +.++++++|++ +|+++++...|++.+.++++.+.. .+.+...++
T Consensus 134 Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~-----kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F 207 (319)
T PF08767_consen 134 PEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGF-----KHTNREISETGLNILLELLNNVSK-TNPEFANQF 207 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHH-----TSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 99999999999999999998887 44332 33444444444 999999999999999999999976 112344566
Q ss_pred HHHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHHHH-------------------HHHhHHHHHHHHHhcC
Q 001968 882 FQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMY-------------------EKFGNDFLVHFVTKGF 942 (989)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~~-------------------~~~~~~~l~~~~~~~~ 942 (989)
|++|+...+.. .+.++. |..+...+...+.++..+. ..+..+++..++.+.|
T Consensus 208 ~~~y~~~il~~--if~vlt-------D~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~F 278 (319)
T PF08767_consen 208 YQQYYLDILQD--IFSVLT-------DSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAF 278 (319)
T ss_dssp HHHHHHHHHHH--HHHHHH-------STT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH--HHHHHH-------CcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhC
Confidence 77776654432 233333 2223334445555555444 2334567778888899
Q ss_pred CCCCCCHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhhcc
Q 001968 943 PSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKLRVQQN 983 (989)
Q Consensus 943 P~~~~~~~~~~~f~~~l~~--~~~~~f~~~~~~f~~~~r~~~~ 983 (989)
| ++++++.+.|++.|++ .|..+||+++|||++++|+++|
T Consensus 279 p--~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~kef~g 319 (319)
T PF08767_consen 279 P--NLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLKEFSG 319 (319)
T ss_dssp T--TS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHTSTTT
T ss_pred C--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhccC
Confidence 9 9999999999999998 5799999999999999999986
No 16
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.77 E-value=5.8e-13 Score=149.92 Aligned_cols=143 Identities=23% Similarity=0.266 Sum_probs=114.6
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhhcCC---------
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTS--------- 73 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~w~~--------- 73 (989)
+.+.+..+.+ +|+..|.+|+..|.++..+++.-.....+..+. .+...|.+|+..|++.|.++|..
T Consensus 6 ii~~L~~~ls----~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 6 IIELLSGSLS----ADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHhhcC----CChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 3344444454 499999999999999999888433333444333 45689999999999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-chhHHHH
Q 001968 74 -MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVIDMF 151 (989)
Q Consensus 74 -l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~-~~~~~~~ 151 (989)
-+.+.|..||+.|++.+.. +++.+++..+.+++.|+..+||+.||+.++-++.+++++ ..+....
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~-------------sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~a 148 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDD-------------SNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGA 148 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhc-------------cccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhH
Confidence 4567788889988887763 467899999999999999999999999999999999854 4677789
Q ss_pred HHHHHHHHHHHh
Q 001968 152 CRVLNSLDDELI 163 (989)
Q Consensus 152 L~iL~~l~Eev~ 163 (989)
+++|..+..|+.
T Consensus 149 m~vL~el~~ev~ 160 (1005)
T KOG2274|consen 149 MRVLAELSDEVD 160 (1005)
T ss_pred HHHHHHHHHHHH
Confidence 999999988884
No 17
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.1e-12 Score=143.15 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=128.4
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCc-hHHHHHHHHHHHHHHhhhcC-----CCCHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNI-VQVQFWCLQTLSEVVRVKYT-----SMSSE 77 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~-~~vr~fa~~~L~~~I~~~w~-----~l~~~ 77 (989)
+.+.++.+.+| |...++.|++.|.+.+++|........+..+.++ ..||..|..-+||-|.+.|. +||+|
T Consensus 2 vvq~Lq~Ats~----d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~E 77 (978)
T KOG1993|consen 2 VVQVLQQATSQ----DHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPE 77 (978)
T ss_pred HHHHHHHhcCC----CcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHH
Confidence 45667777776 7889999999999999999998888887766544 58999999999999999995 69999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC----chhHHHHHH
Q 001968 78 ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG----SMVIDMFCR 153 (989)
Q Consensus 78 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~----~~~~~~~L~ 153 (989)
+|..||..++.+... +..-+-.+.|++++.|++.+||..||++|+++.+.+++. +. ....+
T Consensus 78 EK~~iR~~Ll~~~~E-------------~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~--~~~~R 142 (978)
T KOG1993|consen 78 EKDFIRCNLLLHSDE-------------ENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDS--LVQHR 142 (978)
T ss_pred HHHHHHHHHHHhccc-------------chhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchH--HHHHH
Confidence 999999999987653 356788899999999999999999999999999998764 32 12333
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001968 154 VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIV 200 (989)
Q Consensus 154 iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL 200 (989)
||..+..-+. ....+|-..-+.++.+. .+.|+..+.-++
T Consensus 143 iLi~l~~ilK-------~Lat~RL~a~rk~F~el-~~~I~~~l~~~l 181 (978)
T KOG1993|consen 143 ILITLHHILK-------ALATKRLLADRKAFYEL-APEILTILAPIL 181 (978)
T ss_pred HHHHHHHHHH-------HHHHhHHhhhhHHHHHH-hHHHHHHHHHHH
Confidence 3333333221 11223334445566665 777776554443
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6e-11 Score=138.60 Aligned_cols=599 Identities=16% Similarity=0.171 Sum_probs=326.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhcccc--ccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCC
Q 001968 192 IVRAWYDIVSMYRSSDFEVCTGVLDCMRRYIS--WIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMD 269 (989)
Q Consensus 192 i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~--wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~ 269 (989)
++..+..++.. ..+++++..+.--++..+. |-.++.-....+...++..+.. -..+.+|..-++.+.+|..+-.+
T Consensus 37 ~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~-E~~~~vr~k~~dviAeia~~~l~ 113 (1075)
T KOG2171|consen 37 LLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS-ETEPSVRHKLADVIAEIARNDLP 113 (1075)
T ss_pred hHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccc
Confidence 55555566654 4566655444443433333 6555543334555555555553 35789999999999999876443
Q ss_pred cchhhh-HhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcc
Q 001968 270 PQSKLN-LLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEV 348 (989)
Q Consensus 270 ~~~k~~-li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 348 (989)
. +-. +++.| ++ .....|+.+.+..-.++ ..+.+.+. +.. .+++..+.+++...+.+++.
T Consensus 114 e--~WPell~~L-----~q-~~~S~~~~~rE~al~il----~s~~~~~~---~~~-----~~~~~~l~~lf~q~~~d~s~ 173 (1075)
T KOG2171|consen 114 E--KWPELLQFL-----FQ-STKSPNPSLRESALLIL----SSLPETFG---NTL-----QPHLDDLLRLFSQTMTDPSS 173 (1075)
T ss_pred c--chHHHHHHH-----HH-HhcCCCcchhHHHHHHH----Hhhhhhhc---ccc-----chhHHHHHHHHHHhccCCcc
Confidence 3 221 33321 11 22334555544333322 22222221 101 14778899999888887765
Q ss_pred cchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHH-----HHHHHHHHH
Q 001968 349 DTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRM-----VEYRKDLLV 423 (989)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f-----~~~R~~l~~ 423 (989)
........-...|...+........+++.+++.++.++-.-+...++..-. ..+ +.-.++ .-+|..+.+
T Consensus 174 ~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~-~~l-----~~l~El~e~~pk~l~~~l~~ 247 (1075)
T KOG2171|consen 174 PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK-SAL-----EALIELLESEPKLLRPHLSQ 247 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH-HHH-----HHHHHHHhhchHHHHHHHHH
Confidence 454344444444554433223344567778888887775533332211000 000 000111 125566666
Q ss_pred HHHHHHhhC---------hHHHHHHHHHHHHHhhcCC----------------------CCCChhH------------HH
Q 001968 424 LLRSVGRVA---------PEVTQVFIRNSLANAVTFS----------------------ADRNVEE------------VE 460 (989)
Q Consensus 424 ~l~~i~~i~---------~~~~l~~i~~~l~~~~~~~----------------------~~~~w~~------------~E 460 (989)
+++.+..+. ....++++......+.... ....|.. --
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 666553332 1233444433222221100 0012211 00
Q ss_pred HHHHHHHHhcccCchhhhhcccccHHHHHHHHHhC-CCCCCCCchHHHHHHHHHH-hhHhhhhhccCchHHHHHHhhccc
Q 001968 461 AALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT-KLPCHSNRLVALVYLETVT-RYMKFIQEHTQYIPVVLAAFLDER 538 (989)
Q Consensus 461 a~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~-~~~~~~~~~v~~~~~~~lg-~y~~~l~~~~~~L~~vl~~l~~~~ 538 (989)
.|..++-.++-.++ ++.++|.+++.+... .-++..++..+++.+..+| ..++.+.. .|+.|++.++.
T Consensus 328 ~A~~~lDrlA~~L~------g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~---~l~~Il~~Vl~-- 396 (1075)
T KOG2171|consen 328 AAEQALDRLALHLG------GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG---NLPKILPIVLN-- 396 (1075)
T ss_pred HHHHHHHHHHhcCC------hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH---HHHHHHHHHHh--
Confidence 12222222222222 224555555443311 2233344555566544454 33444443 68888888887
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhhhcchhh-HHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHcc-CCC
Q 001968 539 GIHHPNVHVSRRASYLFMRVVKLLKAKLVPF-IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM-EDV 616 (989)
Q Consensus 539 ~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~-~~~ 616 (989)
|+.+|+|+||.+||.++-.+..+..+.+..+ .+.++..+...+.... ..+... .|.+.++.. ..-
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~------------~~rV~a-hAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ------------NVRVQA-HAAAALVNFSEEC 463 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC------------chHHHH-HHHHHHHHHHHhC
Confidence 9999999999999999999999998888654 4444444444443211 123333 344445433 122
Q ss_pred ChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHH
Q 001968 617 PPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLL 696 (989)
Q Consensus 617 ~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (989)
+.+...+|+..++++.+..+.+ +. ...+. ..+..+|++++.+-+. .+.++|..+|+.+.
T Consensus 464 ~~~~l~pYLd~lm~~~l~~L~~---~~--------~~~v~--e~vvtaIasvA~AA~~--------~F~pY~d~~Mp~L~ 522 (1075)
T KOG2171|consen 464 DKSILEPYLDGLMEKKLLLLLQ---SS--------KPYVQ--EQAVTAIASVADAAQE--------KFIPYFDRLMPLLK 522 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHhc---CC--------chhHH--HHHHHHHHHHHHHHhh--------hhHhHHHHHHHHHH
Confidence 4456667777776664433222 11 11111 2456777777765543 47899999999999
Q ss_pred HHhhcCC--CChhHhHHHHHHHHHHHhhhc-ccccCchHHHHHHHHccC-----ChhH-HHHHHHHHHHHHHHhhhhhHH
Q 001968 697 QILVVFP--KVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAES-----EPKE-MAGFLVLLNQLICKFNTLVHD 767 (989)
Q Consensus 697 ~~l~~~~--~~~~i~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~ll~~~-----~~~~-~~~~L~l~~~li~~~~~~~~~ 767 (989)
.++.+-. +...+|.++..++.-+-...| +.|.|+..++++.++..- ...+ -+..+.+++.++..+|+++.|
T Consensus 523 ~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p 602 (1075)
T KOG2171|consen 523 NFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAP 602 (1075)
T ss_pred HHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHh
Confidence 9988654 335677788899999999999 567899999998776542 1112 256678899999999999999
Q ss_pred HHHHhHHHHHHHHHhhcCCCCCCCC----CCCCCHH--HH------------HHHHHHHHHHHHHHHHHhcCCCccccCC
Q 001968 768 ILDEVFPAIAGRIFNIIPRDAFPSG----PGTNTEE--IR------------EVQELQRTLYTFLHVIATHDLSSVFLSP 829 (989)
Q Consensus 768 ~l~~~~~~l~~~~~~~l~~~~~~~~----~~~~~~~--~~------------~~pd~~~~~~~ll~~~~~~~~~~~~~s~ 829 (989)
+++.++++++...- +-......++ ...+.++ .. .--|-+.....++..+...- ..
T Consensus 603 ~L~~Vmppl~~ta~-~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l------k~ 675 (1075)
T KOG2171|consen 603 FLPVVMPPLLKTAR-LDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKEL------KE 675 (1075)
T ss_pred HHHHHhHHHHHhhc-cCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhh------hh
Confidence 99999999986542 1111000000 0000000 00 01122233344444443321 22
Q ss_pred CCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhC
Q 001968 830 KSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 830 ~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~ 871 (989)
...+|.+.++...+-...-+.+.+++++|+..+..++.+...
T Consensus 676 ~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 676 AFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 235688888884444444677889999999999999998753
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.25 E-value=1.7e-06 Score=99.27 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhhcCC-----CCHHHHHHHHHHHHHHHH
Q 001968 18 IDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTS-----MSSEERNLIRESVFSMVC 91 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~w~~-----l~~~~~~~lr~~ll~~l~ 91 (989)
.+|..++.|++-|++..++++.......+..+. .+..+|.-|+.-+++.|.++|.+ +.++++..||..++..+.
T Consensus 16 ~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii 95 (947)
T COG5657 16 PDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLII 95 (947)
T ss_pred CCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHH
Confidence 477789999999999999999655555555444 44689999999999999999965 667777799999999988
Q ss_pred hhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHH
Q 001968 92 CELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSM-VIDMFCRVLNSLDDEL 162 (989)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~-~~~~~L~iL~~l~Eev 162 (989)
+. +..+.=+.+.+++.|+..+||++||++++|+++.++.++. .-...++++..+-.+.
T Consensus 96 ~s-------------~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 96 SS-------------SNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred cc-------------cchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 64 2233338899999999999999999999999999998553 2334455544444443
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.15 E-value=2.4e-06 Score=97.82 Aligned_cols=576 Identities=16% Similarity=0.173 Sum_probs=279.2
Q ss_pred CchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCC
Q 001968 51 NIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIW 130 (989)
Q Consensus 51 ~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~W 130 (989)
++-..||+|..-|-+-+++.--.|+.+.-..+-..++..+... +.-|.|-...+++-++..--.++-
T Consensus 17 sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-------------ngEVQnlAVKClg~lvsKvke~~l 83 (1233)
T KOG1824|consen 17 SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-------------NGEVQNLAVKCLGPLVSKVKEDQL 83 (1233)
T ss_pred CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-------------CcHHHHHHHHHHHHHHhhchHHHH
Confidence 4457999999999999999877787776555555666666542 345777777788877643222355
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH
Q 001968 131 SSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFE 209 (989)
Q Consensus 131 p~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~ 209 (989)
.+.++.+...+-++ ....+.----|+...-++.-+ ..+ .+....++.+..-+.+.+.. +.....
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~--~~~------------~la~tV~~~~t~~l~~~i~~-qe~~sa 148 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS--SSS------------FLAATVCKRITPKLKQAISK-QEDVSA 148 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc--ccc------------ccccHHHHHHHHHHHHHhhh-cccchh
Confidence 66666666664332 222222222222222233100 000 01111122222222222221 122334
Q ss_pred HHHHHHHHhhccccccccccccc--cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhh-hHhhhhhhhhhh
Q 001968 210 VCTGVLDCMRRYISWIDINLIAN--DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKL-NLLQTLQISRVF 286 (989)
Q Consensus 210 l~~~~L~~l~~~i~wi~~~~~~~--~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~-~li~~l~l~~~~ 286 (989)
+...+|+.+.-+++-.. ++..+ ..++..+...+. .+...+|..|+.||..++..+-. +-+ .+++.+ +
T Consensus 149 i~~e~lDil~d~lsr~g-~ll~~fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~--~ly~~li~~L-----l 218 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFG-TLLPNFHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNR--DLYVELIEHL-----L 218 (1233)
T ss_pred hHHHHHHHHHHHHHhhc-ccCcchHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHH-----H
Confidence 55667777776665211 11111 122222222222 24577889999999888765421 111 133332 1
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCc-ccc--hhcHHHHHHHHHH
Q 001968 287 GLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCE-VDT--TFSIVQFLSGYVA 363 (989)
Q Consensus 287 ~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~--~~~~~~~~~~~l~ 363 (989)
..+.+.....-.+..-+++++++-+....+. .+++...|++..+....+ .++ +..++.-+..|+.
T Consensus 219 ~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~------------~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 219 KGLSNRTQMSATRTYIQCLAAICRQAGHRFG------------SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred hccCCCCchHHHHHHHHHHHHHHHHhcchhh------------cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 1122222223333334444444433222111 355667788877763221 122 2123333333443
Q ss_pred HhccCCCChHHHhHhHHHHHHHHHHHcccCccccccc--c----ccccCCh-h-------HHHHHHHHHHHHHHHHHHHH
Q 001968 364 TMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNL--D----VLDKIGI-E-------EEDRMVEYRKDLLVLLRSVG 429 (989)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~--~----~~~~~~~-~-------~~~~f~~~R~~l~~~l~~i~ 429 (989)
+ .+ ....++.+.+++.++.++.|+|.++.+. | ..++++| + ||+.-.-.|+.....+..+.
T Consensus 287 r---cp---~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~I 360 (1233)
T KOG1824|consen 287 R---CP---KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVI 360 (1233)
T ss_pred h---Ch---hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHH
Confidence 2 11 1234678899999999999988764221 0 0111111 1 11111235666555555443
Q ss_pred hhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCC---CCCchHH
Q 001968 430 RVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPC---HSNRLVA 506 (989)
Q Consensus 430 ~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~---~~~~~v~ 506 (989)
.-..+ .++.+.+.+.-.+- .-+.++|=-.- ...+...+..+.+.+... .+|-+.
T Consensus 361 sSR~E-~L~~~~q~l~p~lI----~RfkEREEnVk-----------------~dvf~~yi~ll~qt~~~~~~~~d~d~~- 417 (1233)
T KOG1824|consen 361 SSRLE-MLPDFYQTLGPALI----SRFKEREENVK-----------------ADVFHAYIALLKQTRPVIEVLADNDAM- 417 (1233)
T ss_pred hccHH-HHHHHHHHhCHHHH----HHHHHHhhhHH-----------------HHHHHHHHHHHHcCCCCcccccCchhh-
Confidence 22222 23333322221110 01222221110 012222222222111000 000000
Q ss_pred HHHHHHHHhhH---hhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhc
Q 001968 507 LVYLETVTRYM---KFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIAR 583 (989)
Q Consensus 507 ~~~~~~lg~y~---~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 583 (989)
+- |.-. .++.....++-.++..- +++...+-+..+...+..+....+..+.++++.++..+...+..
T Consensus 418 ----e~-~g~~s~~~~L~~~~~~iVkai~~q-----lr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D 487 (1233)
T KOG1824|consen 418 ----EQ-GGTPSDLSMLSDQVPLIVKAIQKQ-----LREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND 487 (1233)
T ss_pred ----hc-cCCccchHHHHhhhHHHHHHHHHH-----HhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC
Confidence 00 0000 01111111222222222 23333344555667778888899999999999998888777754
Q ss_pred cccCCcccccCCCCcchhHHHHHHHHHHccC-CCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHH
Q 001968 584 FTSMNYASKELSGSEDGSHIFEAIGLLIGME-DVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQII 662 (989)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~eai~~li~~~-~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l 662 (989)
... .-..-+++++.+.++. .-+++...+++..+.+|+......-.-+- .. ..+
T Consensus 488 kSs------------ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKi-----------sa---EAL 541 (1233)
T KOG1824|consen 488 KSS------------SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKI-----------SA---EAL 541 (1233)
T ss_pred ccc------------hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhh-----------hH---HHH
Confidence 321 1223355665555542 12678888888887777765433211110 01 112
Q ss_pred HHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC
Q 001968 663 MAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (989)
Q Consensus 663 ~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~ 742 (989)
.+...+.|...+...+ ..-...+.+.++....++-++.-..+-++||++..+++.++..+|+...-.+|..++.++...
T Consensus 542 ~v~~~lvkvirpl~~~-~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl 620 (1233)
T KOG1824|consen 542 LVCQQLVKVIRPLQPP-SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL 620 (1233)
T ss_pred HHHHHHHHHhcccCCC-ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 2333333333322110 011234667777788777777777889999999999999999999777788888888887765
No 21
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1e-05 Score=89.50 Aligned_cols=449 Identities=14% Similarity=0.193 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhH
Q 001968 331 LLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEE 410 (989)
Q Consensus 331 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~ 410 (989)
.+.-++|-++.+++|+....+...+..++.|+-. . .......+-+.++.++.... | ++
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~-----~qal~~~iD~Fle~lFalan---D-----------~~-- 228 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-Q-----TQALYVHIDKFLEILFALAN---D-----------ED-- 228 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-C-----cHHHHHHHHHHHHHHHHHcc---C-----------CC--
Confidence 4667888889999998655543455556655532 1 12223345556666665321 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHhccc-CchhhhhcccccHHHH
Q 001968 411 EDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRN-VEEVEAALTLLYALGES-MSEEAMRTGAGHLSEL 488 (989)
Q Consensus 411 ~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~-w~~~Ea~l~~l~~i~e~-~~~~~~~~~~~~l~~l 488 (989)
.+.|+.+...+-....+.|+...+++.++++..+......+ =-.+||+=|- .+++|. ++.+. -..+++++
T Consensus 229 ----~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw-la~aeqpi~~~~---L~p~l~kl 300 (885)
T KOG2023|consen 229 ----PEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW-LALAEQPICKEV---LQPYLDKL 300 (885)
T ss_pred ----HHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH-HHHhcCcCcHHH---HHHHHHHH
Confidence 25788888777777777888888888877776665322111 2467888766 345554 22221 12467777
Q ss_pred HHHHHhCCCCCC----------C-----------Cch---------------------------------H---HHHHHH
Q 001968 489 VPMLLQTKLPCH----------S-----------NRL---------------------------------V---ALVYLE 511 (989)
Q Consensus 489 l~~ll~~~~~~~----------~-----------~~~---------------------------------v---~~~~~~ 511 (989)
++.|++...-++ . .|. + ...
T Consensus 301 iPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAA--- 377 (885)
T KOG2023|consen 301 IPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAA--- 377 (885)
T ss_pred HHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHH---
Confidence 776654210000 0 011 0 111
Q ss_pred HHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCccc
Q 001968 512 TVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYAS 591 (989)
Q Consensus 512 ~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~ 591 (989)
.++-.+..+. .+.|+.+++.+=+ .+.+..=.||.++.-+|-.+++.|-.-+.||++.++..+.+++..+.++ .
T Consensus 378 aLDVLanvf~--~elL~~l~PlLk~--~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkpl--V- 450 (885)
T KOG2023|consen 378 ALDVLANVFG--DELLPILLPLLKE--HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPL--V- 450 (885)
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHH--HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccc--e-
Confidence 2333334433 3567777776665 4444555799999999999999999999999999999999998765321 1
Q ss_pred ccCCCCcchh-HHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhcc
Q 001968 592 KELSGSEDGS-HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSK 670 (989)
Q Consensus 592 ~~~~~~~~~~-~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k 670 (989)
+ .-.. .+..---.+++ +...+|+..++.+++.++-.. +++ +.+ ..+.+++.+-.
T Consensus 451 R-----sITCWTLsRys~wv~~------~~~~~~f~pvL~~ll~~llD~-----------NK~-VQE--AAcsAfAtleE 505 (885)
T KOG2023|consen 451 R-----SITCWTLSRYSKWVVQ------DSRDEYFKPVLEGLLRRLLDS-----------NKK-VQE--AACSAFATLEE 505 (885)
T ss_pred e-----eeeeeeHhhhhhhHhc------CChHhhhHHHHHHHHHHHhcc-----------cHH-HHH--HHHHHHHHHHH
Confidence 1 0011 12221122222 235567666666665443221 111 111 12334444322
Q ss_pred CCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccc--cCchHHHHHHHHccC-----C
Q 001968 671 GFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV--FPYLPKALEQLLAES-----E 743 (989)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~--~p~l~~l~~~ll~~~-----~ 743 (989)
.- .+++.|++..++..+...+.+|.+-.-+. ...+++++....|.+. ..|+.-+++.|++.- +
T Consensus 506 ~A--------~~eLVp~l~~IL~~l~~af~kYQ~KNLlI--LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~ 575 (885)
T KOG2023|consen 506 EA--------GEELVPYLEYILDQLVFAFGKYQKKNLLI--LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS 575 (885)
T ss_pred hc--------cchhHHHHHHHHHHHHHHHHHHhhcceeh--HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc
Confidence 11 23577888888888888888886543333 6778888888888765 233444444444321 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHH---HHHHhhcCCCCCCCCCCCCCHHHHHHHH--HHHHHHHHHHHHH
Q 001968 744 PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIA---GRIFNIIPRDAFPSGPGTNTEEIREVQE--LQRTLYTFLHVIA 818 (989)
Q Consensus 744 ~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~---~~~~~~l~~~~~~~~~~~~~~~~~~~pd--~~~~~~~ll~~~~ 818 (989)
-+++--.|.+++.+....|..+.|+...++...+ +++.+.+... .++... +.|| ..---+.|++.++
T Consensus 576 DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~---~~~~~~-----~~pdkdfiI~sLDL~SGLa 647 (885)
T KOG2023|consen 576 DKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKV---QQDPTV-----EAPDKDFIIVSLDLLSGLA 647 (885)
T ss_pred cchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhc---cCCccc-----cCCCcceEEEeHHHHhHHH
Confidence 3556667889999999999999888776665433 3333322211 111110 1111 1111233343333
Q ss_pred h---cCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhh
Q 001968 819 T---HDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWC 870 (989)
Q Consensus 819 ~---~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~ 870 (989)
. .+...+. .++| ++..+..++ ...-|+++.+|+..+.++.....
T Consensus 648 egLg~~ie~Lv-a~sn------l~~lll~C~-~D~~peVRQS~FALLGDltk~c~ 694 (885)
T KOG2023|consen 648 EGLGSHIEPLV-AQSN------LLDLLLQCL-QDEVPEVRQSAFALLGDLTKACF 694 (885)
T ss_pred HHhhhchHHHh-hhcc------HHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHH
Confidence 3 3333432 3343 344444444 66788999999999999998764
No 22
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.93 E-value=3.8e-09 Score=88.53 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=61.4
Q ss_pred HHHHHHHHhcC-CchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhhcC--------CCCHHHHHHHHHHHHHHHH
Q 001968 26 AVNFCQQIKET-PSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYT--------SMSSEERNLIRESVFSMVC 91 (989)
Q Consensus 26 A~~~L~~~q~~-~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~w~--------~l~~~~~~~lr~~ll~~l~ 91 (989)
|+++|++++++ |++|..+.+++.+. .++++|++|+.+|++.|+++|. .+|+++|..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 99999999999554 4689999999999999999999 9999999999999999875
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.0001 Score=83.24 Aligned_cols=289 Identities=14% Similarity=0.161 Sum_probs=175.8
Q ss_pred CChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHh----hhhhc----c-
Q 001968 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMK----FIQEH----T- 524 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~----~l~~~----~- 524 (989)
.-|-. +++-..++.+++.+++.. .....++.+++.++. ++ ..+|.|+.-.+.....+++ -...+ |
T Consensus 419 sl~Vk-dTaAwtlgrI~d~l~e~~--~n~~~l~~~l~~l~~-gL--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 419 SLWVK-DTAAWTLGRIADFLPEAI--INQELLQSKLSALLE-GL--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred hhhhc-chHHHHHHHHHhhchhhc--ccHhhhhHHHHHHHH-Hh--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 44555 666678899999998531 122455555665553 22 3567774222112333332 22112 1
Q ss_pred -CchHHHHHHhhcccCCC--C-CCchhhhhHHHHHHHHHHHhhhcch----hhHHHHHHHhHhhhhccccCCcccccCCC
Q 001968 525 -QYIPVVLAAFLDERGIH--H-PNVHVSRRASYLFMRVVKLLKAKLV----PFIENILQSLQDTIARFTSMNYASKELSG 596 (989)
Q Consensus 525 -~~L~~vl~~l~~~~~l~--~-~~~~v~~~A~~al~~l~~~~~~~l~----p~~~~il~~l~~~l~~~~~~~~~~~~~~~ 596 (989)
.+.+.++..|+. +-+ + ..-.+|.+|-.+|..+++.|..... .....++.++.+.++.. .+...+++- -
T Consensus 493 t~~y~~ii~~Ll~--~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~-~l~~~dr~q-~ 568 (859)
T KOG1241|consen 493 TPFYEAIIGSLLK--VTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQ-ILSLADRAQ-L 568 (859)
T ss_pred chhHHHHHHHHHh--hccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-hccHhhHHH-H
Confidence 367788888885 322 1 2346899999999999987776554 45666667776666511 110000000 0
Q ss_pred CcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCC
Q 001968 597 SEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERL 676 (989)
Q Consensus 597 ~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~ 676 (989)
.+-+-.+.-.++.++...+ .++.++-+.+|.-++.-++. ..+..-.+ +.... +-..+.+++++|
T Consensus 569 ~eLQs~Lc~~Lq~i~rk~~---~~~~~~~d~iM~lflri~~s----~~s~~v~e--~a~la---V~tl~~~Lg~~F---- 632 (859)
T KOG1241|consen 569 NELQSLLCNTLQSIIRKVG---SDIREVSDQIMGLFLRIFES----KRSAVVHE--EAFLA---VSTLAESLGKGF---- 632 (859)
T ss_pred HHHHHHHHHHHHHHHHHcc---ccchhHHHHHHHHHHHHHcC----CccccchH--HHHHH---HHHHHHHHhHhH----
Confidence 0123456667777777744 26777878888777766655 11111111 11111 112223344444
Q ss_pred cCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChh-----HHHHHH
Q 001968 677 VTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK-----EMAGFL 751 (989)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~-----~~~~~L 751 (989)
..+.....|.+...++++.. ..+...+..+.++++++++.++.||...++..|++....+ --|-+|
T Consensus 633 --------~kym~~f~pyL~~gL~n~~e-~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~Il 703 (859)
T KOG1241|consen 633 --------AKYMPAFKPYLLMGLSNFQE-YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAIL 703 (859)
T ss_pred --------HHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHH
Confidence 44555666777777766544 4677778999999999999999999999999999876432 136788
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHH
Q 001968 752 VLLNQLICKFNTLVHDILDEVFPAIA 777 (989)
Q Consensus 752 ~l~~~li~~~~~~~~~~l~~~~~~l~ 777 (989)
+++|.+.-..|.+|.+|++.+++-+-
T Consensus 704 S~FgDIAlaIg~~F~~Yl~~vm~llq 729 (859)
T KOG1241|consen 704 SVFGDIALAIGADFEPYLEMVMPLLQ 729 (859)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999988776443
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.32 E-value=0.017 Score=67.55 Aligned_cols=457 Identities=15% Similarity=0.152 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhH
Q 001968 55 VQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVF 134 (989)
Q Consensus 55 vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~ 134 (989)
++--++-++...+.+--.-+++ ....+-..++..+.. .-..||+|.+.+++.++..--..-+...+
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s-------------~R~aVrKkai~~l~~la~~~~~~ly~~li 214 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQS-------------PRLAVRKKAITALGHLASSCNRDLYVELI 214 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccC-------------hHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555555666665554344444 666666666655543 35789999999999997644334677788
Q ss_pred HHHHHhhcCCc--hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Q 001968 135 VDFLPQLNKGS--MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCT 212 (989)
Q Consensus 135 ~~l~~~~~~~~--~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~ 212 (989)
.+++.-+.+.. ..+......|..++--.+.+ +-..+.. .+|-+.+++..+ +..+.++++
T Consensus 215 ~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r--------------~~~h~~~-ivp~v~~y~~~~----e~~dDELrE 275 (1233)
T KOG1824|consen 215 EHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR--------------FGSHLDK-IVPLVADYCNKI----EEDDDELRE 275 (1233)
T ss_pred HHHHhccCCCCchHHHHHHHHHHHHHHHHhcch--------------hhcccch-hhHHHHHHhccc----ccCcHHHHH
Confidence 88888776643 22333444444444433211 0001111 144444444333 356789999
Q ss_pred HHHHHhhcccccccccccc-ccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccC
Q 001968 213 GVLDCMRRYISWIDINLIA-NDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSE 291 (989)
Q Consensus 213 ~~L~~l~~~i~wi~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~ 291 (989)
.+|+++.+|+..-|-+... -+++++++.+.+..+ |.+- -+++.++......--.=.+--+.+.+
T Consensus 276 ~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYD---PNy~------------yd~~eDed~~~~ed~eDde~~deYsD 340 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKEILPHVPEIINLCLSYISYD---PNYN------------YDTEEDEDAMFLEDEEDDEQDDEYSD 340 (1233)
T ss_pred HHHHHHHHHHHhChhhhcccchHHHHHHHHHhccC---CCCC------------CCCccchhhhhhhccccchhcccccc
Confidence 9999999999876654321 245555555555321 1100 00100000000000000000000122
Q ss_pred CcchH--HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCC
Q 001968 292 DGESE--LVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLS 369 (989)
Q Consensus 292 ~~d~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (989)
++|.. +.+.-++.+.++.....|.++. ..+.+-|.+..=+...+-.....++ ..|+..++...
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsSR~E~L~~------------~~q~l~p~lI~RfkEREEnVk~dvf---~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISSRLEMLPD------------FYQTLGPALISRFKEREENVKADVF---HAYIALLKQTR 405 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhccHHHHHH------------HHHHhCHHHHHHHHHHhhhHHHHHH---HHHHHHHHcCC
Confidence 23322 3455666665555543333321 1222233332222221111100122 22222222211
Q ss_pred CCh------------------HHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhh
Q 001968 370 PLK------------------EEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRV 431 (989)
Q Consensus 370 ~~~------------------~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i 431 (989)
++. .......+.++..+-++++ ++. . .-|.+...++......
T Consensus 406 ~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr--~ks-----~-------------kt~~~cf~lL~eli~~ 465 (1233)
T KOG1824|consen 406 PVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR--EKS-----V-------------KTRQGCFLLLTELINV 465 (1233)
T ss_pred CCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh--hcc-----c-------------cchhhHHHHHHHHHHh
Confidence 110 1122334455555555555 110 0 0222233344444444
Q ss_pred ChHHHHHHHHH---HHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHH
Q 001968 432 APEVTQVFIRN---SLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALV 508 (989)
Q Consensus 432 ~~~~~l~~i~~---~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~ 508 (989)
.|...-+.+.. .+...+...++.+--.+|+-.|+..+++..-++ .+. .+++.+.+.+.-+ -+++.+-++.-
T Consensus 466 lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~-~fh---p~~~~Ls~~v~~a--V~d~fyKisaE 539 (1233)
T KOG1824|consen 466 LPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE-VFH---PHLSALSPPVVAA--VGDPFYKISAE 539 (1233)
T ss_pred CcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh-hcc---cchhhhhhHHHHH--hcCchHhhhHH
Confidence 44443333322 222233333444556778777666665544332 222 2333333332211 11233334322
Q ss_pred HHHHHHhhHhhhhh-c-------cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhh
Q 001968 509 YLETVTRYMKFIQE-H-------TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDT 580 (989)
Q Consensus 509 ~~~~lg~y~~~l~~-~-------~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~ 580 (989)
.+-++++|.+++.. + +.+..+++...+...--.+.+.+|+.+|..+...+.-..+..+...++..+..+.+-
T Consensus 540 AL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eR 619 (1233)
T KOG1824|consen 540 ALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLER 619 (1233)
T ss_pred HHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 22268889998864 2 356777776666511123457789999999999998888888888888877777666
Q ss_pred hhccccCCcccccCCCCcchhHHHHHHHHHHcc
Q 001968 581 IARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 613 (989)
Q Consensus 581 l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~ 613 (989)
+.+. -.++..+.|+..+..+
T Consensus 620 l~nE-------------iTRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 620 LGNE-------------ITRLTAVKALTLIAMS 639 (1233)
T ss_pred Hhch-------------hHHHHHHHHHHHHHhc
Confidence 6422 1367778888776655
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00037 Score=84.62 Aligned_cols=184 Identities=14% Similarity=0.158 Sum_probs=114.4
Q ss_pred HHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCC
Q 001968 374 EQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSAD 453 (989)
Q Consensus 374 ~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~ 453 (989)
+..|++++|+..+++ .+|+|+. ..+..+.++-..+..=....+-.+..+++...+-+..+
T Consensus 991 kl~p~l~kLIPrLyR-Y~yDP~~-------------------~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYR-YQYDPDK-------------------KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS 1050 (1702)
T ss_pred hhhhHHHHhhHHHhh-hccCCcH-------------------HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc
Confidence 345677777766654 4565542 12233333333322111233445566666666656677
Q ss_pred CChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchH---HHHHHHHHH----hhHhhhh--hcc
Q 001968 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLV---ALVYLETVT----RYMKFIQ--EHT 524 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v---~~~~~~~lg----~y~~~l~--~~~ 524 (989)
..|+.+||+..++.-+-.+-+.++++ ..+|++..+++ +..++=+..| +--+...++ |.++--. ...
T Consensus 1051 kewRVReasclAL~dLl~g~~~~~~~---e~lpelw~~~f--RvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVK---EKLPELWEAAF--RVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 89999999997777666665444332 46677766665 2233323233 111111233 3333211 124
Q ss_pred CchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhc
Q 001968 525 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIAR 583 (989)
Q Consensus 525 ~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 583 (989)
+.+..+|++++++.++ +..+.||+.+-.++.+++++.+..+.||++.++..+....+.
T Consensus 1126 ~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 7899999999996666 567899999999999999999999999999999888777653
No 26
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.11 Score=57.63 Aligned_cols=358 Identities=13% Similarity=0.143 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhh----hhccC----chHH
Q 001968 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI----QEHTQ----YIPV 529 (989)
Q Consensus 458 ~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l----~~~~~----~L~~ 529 (989)
..+.+-.|++.+++.++.. -+...+++..++..+. ++. .||.+.+-+....-.+.+.+ .+.+. +-+.
T Consensus 424 vk~ttAwc~g~iad~va~~--i~p~~Hl~~~vsa~li-Gl~--D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a 498 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMI--ISPCGHLVLEVSASLI-GLM--DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA 498 (858)
T ss_pred hhhHHHHHHHHHHHHHHHh--cCccccccHHHHHHHh-hhh--ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH
Confidence 3455556789888887643 1133566666665442 333 45555322211333333433 33344 3456
Q ss_pred HHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchh----hHHHHHHHhHhhhhccccCCcccccCCCCcch-----
Q 001968 530 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVP----FIENILQSLQDTIARFTSMNYASKELSGSEDG----- 600 (989)
Q Consensus 530 vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p----~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~----- 600 (989)
+++.|+...-...+.-..|..+..+|-.+..-|...+.| +..-++.++.+.++.... .. ..+|+
T Consensus 499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q--~l-----~~eD~~~~~e 571 (858)
T COG5215 499 ILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQ--IL-----ATEDQLLVEE 571 (858)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh--hh-----hhHHHHHHHH
Confidence 666666411112233457888888888888877765544 444555555555543210 00 11222
Q ss_pred --hHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcC
Q 001968 601 --SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVT 678 (989)
Q Consensus 601 --~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~ 678 (989)
..+..-+..+|...+.+.+ ..-+++|.-++.-+++. +.. ..-. .+..+|+.++..++.
T Consensus 572 lqSN~~~vl~aiir~~~~~ie---~v~D~lm~Lf~r~les~-~~t---------~~~~---dV~~aIsal~~sl~e---- 631 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRDIE---DVEDQLMELFIRILEST-KPT---------TAFG---DVYTAISALSTSLEE---- 631 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCcc---cHHHHHHHHHHHHHhcc-CCc---------hhhh---HHHHHHHHHHHHHHH----
Confidence 2333344444444321112 22234444444443332 100 0111 123344444443332
Q ss_pred CCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCCh----hH-HHHHHHH
Q 001968 679 SSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP----KE-MAGFLVL 753 (989)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~----~~-~~~~L~l 753 (989)
++..+.....|.+.+.+. ..+..+...+..+++++.+++|.++.||...++..|.+.... .+ -|.+|++
T Consensus 632 ----~Fe~y~~~fiPyl~~aln--~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSv 705 (858)
T COG5215 632 ----RFEQYASKFIPYLTRALN--CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSV 705 (858)
T ss_pred ----HHHHHHhhhhHHHHHHhc--chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHH
Confidence 234556666677776663 445667777899999999999999999999988888776532 12 3678999
Q ss_pred HHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-------HHHhcCCCccc
Q 001968 754 LNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLH-------VIATHDLSSVF 826 (989)
Q Consensus 754 ~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~-------~~~~~~~~~~~ 826 (989)
+|.+....|.++.++|+.++. +++.. ++. .|.+++- .-.|.++....++. .-.++.+..+
T Consensus 706 FgDIAlaiga~F~~YL~~im~-L~qqa----s~~----~p~~~~~---~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v- 772 (858)
T COG5215 706 FGDIALAIGANFESYLDMIMM-LFQQA----SEL----DPHSDEV---YVDDYRKNAVQLVNCAYVGIGDSSKNRVRSV- 772 (858)
T ss_pred HHHHHHHHhhhHHHHHHHHHH-HHHHH----hcc----CCCCCce---eHHHHHHHHHHHHHHHHHHhhhhhhhhHHHh-
Confidence 999999999999999987664 33332 221 1222211 22233433333222 1111222222
Q ss_pred cCCCCcCChHHHHHHHHHhhcCCC-ChhhhhHHHHHHHHHHHHhhC
Q 001968 827 LSPKSRGYLDPIMQLLLYTSCNHK-DYLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 827 ~s~~~~~~~~~il~~l~~~~~~~~-~~~~~k~a~~~l~~~i~~~~~ 871 (989)
.|++.++...+-..+.+-. ....-|+++..+.++...++.
T Consensus 773 -----~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpk 813 (858)
T COG5215 773 -----LPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPK 813 (858)
T ss_pred -----hhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCC
Confidence 4567777766644443211 122236788888888877754
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.66 E-value=0.21 Score=59.32 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHhcCC-chHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 001968 18 IDSMLKSQAVNFCQQIKETP-SICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~-~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~ 93 (989)
.|...|+-+.-++..+.... +...++...+.+ ++++.+|-.|+.++-+.. +++....+-..+...+.+
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~~- 125 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLSD- 125 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHS-
T ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhcC-
Confidence 58899999999999877644 445555555543 456889999999998864 445555555555544442
Q ss_pred hhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChh-hHHHHHHhhcCC-chhHHHHHHHHHHH
Q 001968 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSS-VFVDFLPQLNKG-SMVIDMFCRVLNSL 158 (989)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~-~~~~l~~~~~~~-~~~~~~~L~iL~~l 158 (989)
..++||++.+.++..++. .+|+.-+. +++.+.+++... +.+....+.++..+
T Consensus 126 ------------~~~~VRk~A~~~l~~i~~-~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 126 ------------PSPYVRKKAALALLKIYR-KDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ------------SSHHHHHHHHHHHHHHHH-HCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ------------CchHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 356999999999999965 47776555 688888887644 34444556665555
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.073 Score=60.15 Aligned_cols=240 Identities=19% Similarity=0.282 Sum_probs=135.1
Q ss_pred CChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh-----------
Q 001968 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE----------- 522 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~----------- 522 (989)
..|+...+++.+++++++..+.- -...++++++-+. ...-+.||-|+-+..+++.+|.+.+.+
T Consensus 266 ~kWrtK~aslellg~m~~~ap~q----Ls~~lp~iiP~ls--evl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll 339 (569)
T KOG1242|consen 266 AKWRTKMASLELLGAMADCAPKQ----LSLCLPDLIPVLS--EVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL 339 (569)
T ss_pred HhhhhHHHHHHHHHHHHHhchHH----HHHHHhHhhHHHH--HHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 37999999999999999988753 2234555555444 223467888865555678888777653
Q ss_pred ----ccC-chHHHHHHhhc-------------------ccCCCCCCchhhhhHHHHHHHHHHHh--hhcchhhHHHHHHH
Q 001968 523 ----HTQ-YIPVVLAAFLD-------------------ERGIHHPNVHVSRRASYLFMRVVKLL--KAKLVPFIENILQS 576 (989)
Q Consensus 523 ----~~~-~L~~vl~~l~~-------------------~~~l~~~~~~v~~~A~~al~~l~~~~--~~~l~p~~~~il~~ 576 (989)
+|. +.+..+..+.. .||+++.+...++.++..+-+.|+-. +..+.||++.|+..
T Consensus 340 d~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~ 419 (569)
T KOG1242|consen 340 DALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPG 419 (569)
T ss_pred HHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhH
Confidence 222 22222211111 03444445566788889999999887 67789999999999
Q ss_pred hHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHH
Q 001968 577 LQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFA 656 (989)
Q Consensus 577 l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~ 656 (989)
+...+... + ++-|.....|+|.++...+ +.. ...+ -|.+. ....... .....
T Consensus 420 lk~~~~d~--~---------PEvR~vaarAL~~l~e~~g---~~~---f~d~-~p~l~---e~~~~~k-----~~~~~-- 471 (569)
T KOG1242|consen 420 LKENLDDA--V---------PEVRAVAARALGALLERLG---EVS---FDDL-IPELS---ETLTSEK-----SLVDR-- 471 (569)
T ss_pred HHHHhcCC--C---------hhHHHHHHHHHHHHHHHHH---hhc---cccc-ccHHH---Hhhccch-----hhhhh--
Confidence 98877532 1 3456777888888876643 111 1111 12111 1111000 00000
Q ss_pred HHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHH
Q 001968 657 NIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALE 736 (989)
Q Consensus 657 ~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~ 736 (989)
......++.+.++.+ .+.+.++++-+.........+..+++-..-++..+-.+.|.++.||+..+++
T Consensus 472 --~g~aq~l~evl~~~~-----------v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~ 538 (569)
T KOG1242|consen 472 --SGAAQDLSEVLAGLG-----------VEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILD 538 (569)
T ss_pred --HHHhhhHHHHHhccc-----------chHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHH
Confidence 011233344443333 2345666666665555444445566655555555555555566666666555
Q ss_pred HHHc
Q 001968 737 QLLA 740 (989)
Q Consensus 737 ~ll~ 740 (989)
.+++
T Consensus 539 ~~~k 542 (569)
T KOG1242|consen 539 EFLK 542 (569)
T ss_pred HHHH
Confidence 5544
No 29
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.33 Score=57.82 Aligned_cols=224 Identities=16% Similarity=0.201 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHhcc---C--CchHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHh
Q 001968 20 SMLKSQAVNFCQQIKETPSICRICIEKLSL---C--NIVQVQFWCLQTLSEVVRVK--YTSMSSEERNLIRESVFSMVCC 92 (989)
Q Consensus 20 ~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~--~~~~vr~fa~~~L~~~I~~~--w~~l~~~~~~~lr~~ll~~l~~ 92 (989)
++-+.=|+-+++++-. ...+..+.++.. . -++.|-+|+++-+++.|.+. |.-+-+.-..-+.+.++..+.-
T Consensus 282 ~~y~~Fa~~f~~n~~~--~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~ 359 (1010)
T KOG1991|consen 282 PEYKEFAQMFLKNFAQ--GILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCF 359 (1010)
T ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCC
Confidence 4455555555555432 122333333321 1 23789999999999998864 8888888877777777765541
Q ss_pred hhhcCCCcccCCCChHHHHHHH-------------HHHHHHHHHhhcCCCChhhHHHHHHhhcC---------CchhHHH
Q 001968 93 ELVDGKSSMRVLESPAFIRNKL-------------AQVLVTLIYFEYPLIWSSVFVDFLPQLNK---------GSMVIDM 150 (989)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~kl-------------~~~la~l~~~~~p~~Wp~~~~~l~~~~~~---------~~~~~~~ 150 (989)
. +.....=-..+..+||+|. ...+..+++..-+..-|.++..+.+.+++ ++...+.
T Consensus 360 ~--d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdG 437 (1010)
T KOG1991|consen 360 N--DEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDG 437 (1010)
T ss_pred C--cccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhh
Confidence 1 1000000012345666553 23344455555566788888887777762 2346788
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccc--cccccc
Q 001968 151 FCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYI--SWIDIN 228 (989)
Q Consensus 151 ~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i--~wi~~~ 228 (989)
.|+++..|++-+.. ...+|+.|..--.+.|+.. +++...-++..+...++.|- .|-+.+
T Consensus 438 AL~~vgsl~~~L~K------------~s~~~~~mE~flv~hVfP~-------f~s~~g~Lrarac~vl~~~~~~df~d~~ 498 (1010)
T KOG1991|consen 438 ALRMVGSLASILLK------------KSPYKSQMEYFLVNHVFPE-------FQSPYGYLRARACWVLSQFSSIDFKDPN 498 (1010)
T ss_pred HHHHHHHHHHHHcc------------CCchHHHHHHHHHHHhhHh-------hcCchhHHHHHHHHHHHHHHhccCCChH
Confidence 99999999854411 1223333322112222211 12233345666666666553 243332
Q ss_pred cccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCC
Q 001968 229 LIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMD 269 (989)
Q Consensus 229 ~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~ 269 (989)
.. .+.+....+++.+ .++-.++..|+-+|..+++....
T Consensus 499 ~l--~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 499 NL--SEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HH--HHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchh
Confidence 22 3455666666663 35677888888888888876433
No 30
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.54 E-value=0.0097 Score=65.57 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=91.6
Q ss_pred hHhHHHHHH-HHHHHcccCccccccccccccCChh------HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhh
Q 001968 376 RLHAGQILE-VILTQIRYDPMYRNNLDVLDKIGIE------EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAV 448 (989)
Q Consensus 376 ~~~~~~ll~-~l~~k~~~p~~~~~~~~~~~~~~~~------~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~ 448 (989)
.+++..+++ +++..|++-+++.+ -| +++..| |..++..-|+...++++.++.-.++.+.+.+.+.++..+
T Consensus 182 ~~~L~~Iie~VI~Pnl~~~e~D~E--lf-EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l 258 (370)
T PF08506_consen 182 KPHLQQIIEKVIFPNLCLREEDEE--LF-EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLL 258 (370)
T ss_dssp HHHHHHHHHHTHHHHHS--HHHHH--HH-HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccCCCHHHHH--HH-ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456666666 44556666444321 11 110000 112345678889999999887666666555555444444
Q ss_pred c---CCCCCChhHHHHHHHHHHHhcccCchhh--hhccc--ccHHHHHHHHHhC--CCCCCCCchHHHHHHHHHHhhHhh
Q 001968 449 T---FSADRNVEEVEAALTLLYALGESMSEEA--MRTGA--GHLSELVPMLLQT--KLPCHSNRLVALVYLETVTRYMKF 519 (989)
Q Consensus 449 ~---~~~~~~w~~~Ea~l~~l~~i~e~~~~~~--~~~~~--~~l~~ll~~ll~~--~~~~~~~~~v~~~~~~~lg~y~~~ 519 (989)
+ +.++.+|+..++|++++++++....... ....+ -.+.+.+...+-. .-....||.++..++..+..|..-
T Consensus 259 ~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~ 338 (370)
T PF08506_consen 259 QQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ 338 (370)
T ss_dssp HHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG
T ss_pred HHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh
Confidence 3 1245789999999999999988764321 01001 1122222211100 001245788765554445444443
Q ss_pred hhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHH
Q 001968 520 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLF 555 (989)
Q Consensus 520 l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al 555 (989)
+. ++.+..+++.+.. .+.+++.-|+.-||.++
T Consensus 339 l~--~~~l~~~~~~l~~--~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 339 LP--KEQLLQIFPLLVN--HLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S---HHHHHHHHHHHHH--HTTSS-HHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHH--HhCCCCcchhhhhhhhC
Confidence 32 4678888888887 88888888888888764
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.3 Score=54.42 Aligned_cols=333 Identities=14% Similarity=0.211 Sum_probs=177.0
Q ss_pred HHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc-cCchHHHHHHhhcccC
Q 001968 461 AALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLAAFLDERG 539 (989)
Q Consensus 461 a~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~-~~~L~~vl~~l~~~~~ 539 (989)
++|..+.+++-++..+ ...++..+++-++. -.+++.-.|..-.||.+-..++-.+.. ..|.+.++..+.. .
T Consensus 62 GgLiGlAA~~iaLg~~----~~~Y~~~iv~Pv~~--cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k--l 133 (675)
T KOG0212|consen 62 GGLIGLAAVAIALGIK----DAGYLEKIVPPVLN--CFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK--L 133 (675)
T ss_pred chHHHHHHHHHHhccc----cHHHHHHhhHHHHH--hccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH--H
Confidence 7888777777666543 22355565554431 122333333333334444444444332 4455555555553 3
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhhhcch-h-hHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCC
Q 001968 540 IHHPNVHVSRRASYLFMRVVKLLKAKLV-P-FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVP 617 (989)
Q Consensus 540 l~~~~~~v~~~A~~al~~l~~~~~~~l~-p-~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~ 617 (989)
..+++..|+. ++.++-|+.++.-..=. . .++.+++-+.+.+.... +..+.++.+=+..+-+. |
T Consensus 134 saDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n-----------~~tR~flv~Wl~~Lds~---P 198 (675)
T KOG0212|consen 134 SADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVIN-----------PMTRQFLVSWLYVLDSV---P 198 (675)
T ss_pred hcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHHHhcC---C
Confidence 4455556655 56788888887543222 2 46677776666664332 35688888888877665 5
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHH
Q 001968 618 PEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQ 697 (989)
Q Consensus 618 ~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (989)
+-+...|+..+++.+++.+... .++.+.+.. .+++.+-+..... |... =+.++.+++..
T Consensus 199 ~~~m~~yl~~~ldGLf~~LsD~---------s~eVr~~~~-----t~l~~fL~eI~s~------P~s~-d~~~~i~vlv~ 257 (675)
T KOG0212|consen 199 DLEMISYLPSLLDGLFNMLSDS---------SDEVRTLTD-----TLLSEFLAEIRSS------PSSM-DYDDMINVLVP 257 (675)
T ss_pred cHHHHhcchHHHHHHHHHhcCC---------cHHHHHHHH-----HHHHHHHHHHhcC------cccc-Ccccchhhccc
Confidence 6678889888888777654321 111111111 1122222211111 1000 12333444332
Q ss_pred HhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChh-H-----HHHHHH-HHHHHHHH-hhhhhHHHH
Q 001968 698 ILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK-E-----MAGFLV-LLNQLICK-FNTLVHDIL 769 (989)
Q Consensus 698 ~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~-~-----~~~~L~-l~~~li~~-~~~~~~~~l 769 (989)
-+ -..++.++..+..-+...+...|.++.||++.++..++.-...+ + ..-.+. .+..++.. .+..- +
T Consensus 258 ~l--~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~---i 332 (675)
T KOG0212|consen 258 HL--QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE---I 332 (675)
T ss_pred cc--cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc---c
Confidence 11 24557788778777777889999999999999999888754221 1 111121 12222222 22211 1
Q ss_pred HHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCC
Q 001968 770 DEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNH 849 (989)
Q Consensus 770 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~ 849 (989)
-+.++++.....+.. +..|.|-+..+-+..+..+.++.++..- -+.|..++.++ ..
T Consensus 333 --d~~~ii~vl~~~l~~---------------~~~~tri~~L~Wi~~l~~~~p~ql~~h~--~~if~tLL~tL-----sd 388 (675)
T KOG0212|consen 333 --DYGSIIEVLTKYLSD---------------DREETRIAVLNWIILLYHKAPGQLLVHN--DSIFLTLLKTL-----SD 388 (675)
T ss_pred --chHHHHHHHHHHhhc---------------chHHHHHHHHHHHHHHHhhCcchhhhhc--cHHHHHHHHhh-----cC
Confidence 122333333333332 4567788888888888888888876321 23555555555 44
Q ss_pred CChhhhhHHHHHHHHHH
Q 001968 850 KDYLVRKACVQIFIRLI 866 (989)
Q Consensus 850 ~~~~~~k~a~~~l~~~i 866 (989)
++.++.-.++..+..+.
T Consensus 389 ~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 389 RSDEVVLLALSLLASIC 405 (675)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 44455555565555544
No 32
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.058 Score=66.55 Aligned_cols=133 Identities=12% Similarity=0.161 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHH---HHH
Q 001968 433 PEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVA---LVY 509 (989)
Q Consensus 433 ~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~---~~~ 509 (989)
|+++.+|+.- . - .++.|...-.|-|.++++++...+. ...+++++++.|. +...+|.+.|+ .--
T Consensus 955 PdLVYKFM~L--A--n---h~A~wnSk~GaAfGf~~i~~~a~~k----l~p~l~kLIPrLy--RY~yDP~~~Vq~aM~sI 1021 (1702)
T KOG0915|consen 955 PDLVYKFMQL--A--N---HNATWNSKKGAAFGFGAIAKQAGEK----LEPYLKKLIPRLY--RYQYDPDKKVQDAMTSI 1021 (1702)
T ss_pred hHHHHHHHHH--h--h---hhchhhcccchhhchHHHHHHHHHh----hhhHHHHhhHHHh--hhccCCcHHHHHHHHHH
Confidence 7877777631 1 1 3478999888888999998776432 4578999999988 55567888883 222
Q ss_pred HHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh-cchhhHHHHHHHhHhhhh
Q 001968 510 LETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA-KLVPFIENILQSLQDTIA 582 (989)
Q Consensus 510 ~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~ 582 (989)
|+++..=++-. -.+|+..++.-|+. ++.+..=+||.++|.|+..+.+.-+. .+...++.+-.++.....
T Consensus 1022 W~~Li~D~k~~--vd~y~neIl~eLL~--~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1022 WNALITDSKKV--VDEYLNEILDELLV--NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHhccChHHH--HHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 33332211110 13578888888888 88877678999999999999987542 334555666555554443
No 33
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.066 Score=60.53 Aligned_cols=239 Identities=17% Similarity=0.207 Sum_probs=137.7
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhh
Q 001968 440 IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKF 519 (989)
Q Consensus 440 i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~ 519 (989)
+.+.+-..+.+.....-..++|+..+..++-..++...++ ..++.++..+... .+..+..++.+ +|...+-
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK---~llpsll~~l~~~---kWrtK~aslel---lg~m~~~ 284 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK---LLLPSLLGSLLEA---KWRTKMASLEL---LGAMADC 284 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh---HhhhhhHHHHHHH---hhhhHHHHHHH---HHHHHHh
Confidence 3333333333333455677889998888888888765433 4666666666543 23344555554 4433322
Q ss_pred hh-hccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh-cchhhHHHHHHHhHhhhhccccCCcccccCCCC
Q 001968 520 IQ-EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA-KLVPFIENILQSLQDTIARFTSMNYASKELSGS 597 (989)
Q Consensus 520 l~-~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~ 597 (989)
-. .+..+++.+++.+.+ -|.+.++.||.++-.++.++|.-.+. .+.++++.+++.+.+-.
T Consensus 285 ap~qLs~~lp~iiP~lse--vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~---------------- 346 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSE--VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS---------------- 346 (569)
T ss_pred chHHHHHHHhHhhHHHHH--HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc----------------
Confidence 21 134567778887777 78889999999999999999987764 45677777776664321
Q ss_pred cchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCc
Q 001968 598 EDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLV 677 (989)
Q Consensus 598 ~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~ 677 (989)
.+.-|++=.+....-+ .+-..+-+ .+|-|++.+ .+.... .+ +. ......++.+++-..++
T Consensus 347 ---~~~~e~~~~L~~ttFV-~~V~~psL-almvpiL~R---~l~eRs----t~----~k--r~t~~IidNm~~LveDp-- 406 (569)
T KOG1242|consen 347 ---CYTPECLDSLGATTFV-AEVDAPSL-ALMVPILKR---GLAERS----TS----IK--RKTAIIIDNMCKLVEDP-- 406 (569)
T ss_pred ---cchHHHHHhhcceeee-eeecchhH-HHHHHHHHH---HHhhcc----ch----hh--hhHHHHHHHHHHhhcCH--
Confidence 1112222111111100 00011222 234455432 222111 01 11 12345667777666432
Q ss_pred CCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCch
Q 001968 678 TSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYL 731 (989)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l 731 (989)
..+.+++..++|-+...+.. + .+++|+-+-+++..+.+-+|..-.+.+
T Consensus 407 ----~~lapfl~~Llp~lk~~~~d-~-~PEvR~vaarAL~~l~e~~g~~~f~d~ 454 (569)
T KOG1242|consen 407 ----KDLAPFLPSLLPGLKENLDD-A-VPEVRAVAARALGALLERLGEVSFDDL 454 (569)
T ss_pred ----HHHhhhHHHHhhHHHHHhcC-C-ChhHHHHHHHHHHHHHHHHHhhccccc
Confidence 13567888888888876653 3 789999888888888888887665443
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.87 E-value=1.6 Score=51.75 Aligned_cols=340 Identities=17% Similarity=0.208 Sum_probs=167.3
Q ss_pred HHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCch
Q 001968 425 LRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRL 504 (989)
Q Consensus 425 l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~ 504 (989)
+..+..-.++.. ..+.+.+..-+.+ .+...+-.||.+++.++ ..+ ..+.+++.+. ....+++|.
T Consensus 66 l~~~~~~~~~~~-~l~~n~l~kdl~~---~n~~~~~lAL~~l~~i~---~~~-------~~~~l~~~v~--~ll~~~~~~ 129 (526)
T PF01602_consen 66 LSLYLHEDPELL-ILIINSLQKDLNS---PNPYIRGLALRTLSNIR---TPE-------MAEPLIPDVI--KLLSDPSPY 129 (526)
T ss_dssp HHHHTTTSHHHH-HHHHHHHHHHHCS---SSHHHHHHHHHHHHHH----SHH-------HHHHHHHHHH--HHHHSSSHH
T ss_pred HHHHhhcchhHH-HHHHHHHHHhhcC---CCHHHHHHHHhhhhhhc---ccc-------hhhHHHHHHH--HHhcCCchH
Confidence 333344445432 3344445544443 56666667776666554 322 2233333222 112367888
Q ss_pred HHHHHHHHHHhhHhhhhhccCchHH-HHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc-hhhHHHHHHHhHhhhh
Q 001968 505 VALVYLETVTRYMKFIQEHTQYIPV-VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL-VPFIENILQSLQDTIA 582 (989)
Q Consensus 505 v~~~~~~~lg~y~~~l~~~~~~L~~-vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l-~p~~~~il~~l~~~l~ 582 (989)
|+-.+.-++. +.++..|+.++. .++.+.. .+.++++.|+..|+.++..+ ++.+.. .+.++.++..+...+.
T Consensus 130 VRk~A~~~l~---~i~~~~p~~~~~~~~~~l~~--lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~ 202 (526)
T PF01602_consen 130 VRKKAALALL---KIYRKDPDLVEDELIPKLKQ--LLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLS 202 (526)
T ss_dssp HHHHHHHHHH---HHHHHCHCCHHGGHHHHHHH--HTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---HHhccCHHHHHHHHHHHHhh--hccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhccc
Confidence 8533311344 444446776666 5666665 66778899999999999988 333222 3556666666665553
Q ss_pred ccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHH
Q 001968 583 RFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQII 662 (989)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l 662 (989)
... +-.+..+.+.+..+... .+..... ..++.++...+... . ... +...+
T Consensus 203 ~~~-----------~~~q~~il~~l~~~~~~---~~~~~~~--~~~i~~l~~~l~s~----~-------~~V---~~e~~ 252 (526)
T PF01602_consen 203 DPD-----------PWLQIKILRLLRRYAPM---EPEDADK--NRIIEPLLNLLQSS----S-------PSV---VYEAI 252 (526)
T ss_dssp CCS-----------HHHHHHHHHHHTTSTSS---SHHHHHH--HHHHHHHHHHHHHH----H-------HHH---HHHHH
T ss_pred ccc-----------hHHHHHHHHHHHhcccC---ChhhhhH--HHHHHHHHHHhhcc----c-------cHH---HHHHH
Confidence 221 22355666665544332 2222211 23334333333311 0 011 11223
Q ss_pred HHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC
Q 001968 663 MAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (989)
Q Consensus 663 ~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~ 742 (989)
.++..+. +. ......+++.+..++. ..+..+|-.+...+..++....+.+. .....+..+..+-
T Consensus 253 ~~i~~l~----~~---------~~~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~ 316 (526)
T PF01602_consen 253 RLIIKLS----PS---------PELLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDD 316 (526)
T ss_dssp HHHHHHS----SS---------HHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSS
T ss_pred HHHHHhh----cc---------hHHHHhhHHHHHHHhh--cccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCC
Confidence 3333332 11 1256777788887776 55677888888888887766533333 2222333333222
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001968 743 EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDL 822 (989)
Q Consensus 743 ~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~ 822 (989)
+..--...+.++..++..- ..... +..+. ..+.. ...+|+++....-+..++....
T Consensus 317 d~~Ir~~~l~lL~~l~~~~--n~~~I----l~eL~----~~l~~--------------~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLANES--NVKEI----LDELL----KYLSE--------------LSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp SHHHHHHHHHHHHHH--HH--HHHHH----HHHHH----HHHHH--------------C--HHHHHHHHHHHHHHHHHHG
T ss_pred ChhHHHHHHHHHhhccccc--chhhH----HHHHH----HHHHh--------------ccchhhhhhHHHHHHHHHhccC
Confidence 2222234455565555521 12222 22222 22211 0235678888888887776652
Q ss_pred CccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHH
Q 001968 823 SSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 868 (989)
Q Consensus 823 ~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~ 868 (989)
.. ...+++.++..+ ......+...+...+.+++..
T Consensus 373 ~~------~~~~v~~l~~ll-----~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 373 PD------AEWYVDTLLKLL-----EISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp SS------HHHHHHHHHHHH-----HCTGGGCHCHHHHHHHHHHHH
T ss_pred ch------HHHHHHHHHHhh-----hhccccccchHHHHHHHHhhc
Confidence 21 122344444433 334455666677777777754
No 35
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.68 E-value=0.23 Score=56.12 Aligned_cols=293 Identities=17% Similarity=0.255 Sum_probs=149.0
Q ss_pred CchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHH
Q 001968 525 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIF 604 (989)
Q Consensus 525 ~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~ 604 (989)
.++..++..||. .+..+...=-...-.+++|++--+++.+.|+...+++++..++.....-| ++ +.=..|+|
T Consensus 22 p~~~~ll~~Lf~--~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP--sn----P~FnHylF 93 (435)
T PF03378_consen 22 PFAQQLLQNLFA--LIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP--SN----PRFNHYLF 93 (435)
T ss_dssp CCHHHHHHHHHH--HHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---------HHHHHHHH
T ss_pred hhHHHHHHHHHH--HHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC--CC----cchhhhHH
Confidence 456666666664 33221111123345667888888889999999999999888775332111 11 22356899
Q ss_pred HHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCch
Q 001968 605 EAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAI 684 (989)
Q Consensus 605 eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~ 684 (989)
|++|.+|.... +...+.+..+-+.++..+..++++... +.+-.+.+++..+-.... ++ .+
T Consensus 94 Esi~~lir~~~---~~~~~~v~~~E~~L~P~f~~ILq~dV~-------EF~PYvfQIla~Lle~~~--~~--------~~ 153 (435)
T PF03378_consen 94 ESIGALIRFVC---EADPEAVSQFEEALFPPFQEILQQDVQ-------EFIPYVFQILAQLLELRP--SS--------PL 153 (435)
T ss_dssp HHHHHHHHHS----GGGHH---HHHHHHHHHHHHHHHTT-T-------TTHHHHHHHHHHHHHHSS------------S-
T ss_pred HHHHHHHHhcc---CCChhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCC--CC--------CC
Confidence 99999998743 223333333333344444556654321 122233344443333322 11 11
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccc--cCchHHHHH---HHHccCChhHHHHHHHHHHHHHH
Q 001968 685 GLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV--FPYLPKALE---QLLAESEPKEMAGFLVLLNQLIC 759 (989)
Q Consensus 685 ~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~--~p~l~~l~~---~ll~~~~~~~~~~~L~l~~~li~ 759 (989)
.+.+.++++.++.- ..|.....+- ++-++++..++.-...+ .+.+.+++. .++.+ ...++. ...++..++.
T Consensus 154 p~~y~~L~~~Ll~p-~lWe~~gniP-alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s-k~~D~~-gF~LL~~iv~ 229 (435)
T PF03378_consen 154 PDAYKQLFPPLLSP-ALWERRGNIP-ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS-KANDHY-GFDLLESIVE 229 (435)
T ss_dssp -TTTGGGHHHHTSG-GGGGSTTTHH-HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT--TTCHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHcCc-chhccCCCcC-cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC-CCcchH-HHHHHHHHHH
Confidence 22344455554421 2343333332 22233333332222222 256666555 34432 234534 4478999999
Q ss_pred Hhhhh-hHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccc---CCCCcCCh
Q 001968 760 KFNTL-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFL---SPKSRGYL 835 (989)
Q Consensus 760 ~~~~~-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~---s~~~~~~~ 835 (989)
.+..+ ..+++.+++..++++.-. . .-+..++.|..|+.-++.+..+..++ ..-..+.|
T Consensus 230 ~~p~~~l~~yl~~I~~lll~RLq~----s--------------kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF 291 (435)
T PF03378_consen 230 NLPPEALEPYLKQIFTLLLTRLQS----S--------------KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLF 291 (435)
T ss_dssp HS-HHHHGGGHHHHHHHHHHHHHH----C----------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHhh----C--------------CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcH
Confidence 88876 688888888888777632 1 11346777777777655444333332 12224577
Q ss_pred HHHHHHH-HHhhcCCCChhhhhHHHHHHHHHHH
Q 001968 836 DPIMQLL-LYTSCNHKDYLVRKACVQIFIRLIK 867 (989)
Q Consensus 836 ~~il~~l-~~~~~~~~~~~~~k~a~~~l~~~i~ 867 (989)
..++..+ +....+...+.-+|.|.-.+.+++.
T Consensus 292 ~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~ 324 (435)
T PF03378_consen 292 GMILEKVWLPDLQKVSGPIERKICAVGLTKLLC 324 (435)
T ss_dssp HHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhcCCcchhhHHHHHHHHHHh
Confidence 7777754 3444344555557777777777774
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.65 E-value=0.5 Score=55.11 Aligned_cols=357 Identities=17% Similarity=0.226 Sum_probs=175.8
Q ss_pred ChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhh------hccCchH
Q 001968 455 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQYIP 528 (989)
Q Consensus 455 ~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~------~~~~~L~ 528 (989)
+-++++.+..++..+-+..... +..++..+.+.. + ..+++|.|+...+..++++.+--. .+.+.++
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~------~l~~~~~~~L~~-g-L~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPD------SLLPQYQPFLQR-G-LTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHH------HHHHHHHHHHHH-H-hcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 4455666665566555444332 224444444331 2 236888886555556777643211 2345555
Q ss_pred HHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhh-HHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHH
Q 001968 529 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF-IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAI 607 (989)
Q Consensus 529 ~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai 607 (989)
.++. ++.+++..|...|+.++.++++.- ..+... -+.++..+..++.... ..-+..+||.+
T Consensus 123 ~i~~------~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~-----------~~vR~Rv~el~ 184 (503)
T PF10508_consen 123 LIIQ------CLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSS-----------DIVRCRVYELL 184 (503)
T ss_pred HHHH------HHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccC-----------HHHHHHHHHHH
Confidence 5555 566688899999999999999642 111111 0111455555554211 13478899998
Q ss_pred HHHHccCCCChhhHHHHHHH--hHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchH
Q 001968 608 GLLIGMEDVPPEKQSDYLSS--LLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIG 685 (989)
Q Consensus 608 ~~li~~~~~~~~~~~~~l~~--ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~ 685 (989)
..+.+. +++ -.++... +++.++. .+.. +| .+.++ ..+..++.+++ .+. ..
T Consensus 185 v~i~~~---S~~-~~~~~~~sgll~~ll~----eL~~-------dD--iLvql-nalell~~La~--~~~--------g~ 236 (503)
T PF10508_consen 185 VEIASH---SPE-AAEAVVNSGLLDLLLK----ELDS-------DD--ILVQL-NALELLSELAE--TPH--------GL 236 (503)
T ss_pred HHHHhc---CHH-HHHHHHhccHHHHHHH----HhcC-------cc--HHHHH-HHHHHHHHHHc--Chh--------HH
Confidence 888665 223 3333332 4433333 2221 12 22221 33556666665 111 11
Q ss_pred HH--HHHHHHHHHHHhhcCCCCh---h-HhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC---ChhHHHHHHHHHHH
Q 001968 686 LM--FKQTLDVLLQILVVFPKVE---P-LRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES---EPKEMAGFLVLLNQ 756 (989)
Q Consensus 686 ~~--~~~~~~~~~~~l~~~~~~~---~-i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~---~~~~~~~~L~l~~~ 756 (989)
.+ -..+.+.+...+..-..++ . +.-....++..+...-...+....|.++..+.... +.......+..+|.
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ 316 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQ 316 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 11 1123333444333322222 1 11224466677766534444445577776666433 34444666777776
Q ss_pred HHHHhhhhhHHHH----HHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC----cc---
Q 001968 757 LICKFNTLVHDIL----DEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLS----SV--- 825 (989)
Q Consensus 757 li~~~~~~~~~~l----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~----~~--- 825 (989)
+...- +.+..+ ...+..++...+..+.. ...|++-..++-+..++..... .+
T Consensus 317 igst~--~G~~~L~~~~~~~~~~~l~~~~~~~~~---------------~~~~lk~r~l~al~~il~~~~~~~~~~i~~~ 379 (503)
T PF10508_consen 317 IGSTV--EGKQLLLQKQGPAMKHVLKAIGDAIKS---------------GSTELKLRALHALASILTSGTDRQDNDILSI 379 (503)
T ss_pred HhCCH--HHHHHHHhhcchHHHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 65322 122222 22334444455544443 2245666667777766543321 00
Q ss_pred ----ccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHH-hhCCCCCCCCcchHHHHHHHh
Q 001968 826 ----FLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD-WCARPFVEEKVPGFQSFMIEA 889 (989)
Q Consensus 826 ----~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~-~~~~~~~~~~~~~~~~~~~~~ 889 (989)
|-.-...+ ...++..+ ++.|=++++-+++.++..+... |+... -...+||-+|+.++
T Consensus 380 ~~~w~~~~~~~~-~~~~l~~~----~~qPF~elr~a~~~~l~~l~~~~Wg~~~--i~~~~gfie~lldr 441 (503)
T PF10508_consen 380 TESWYESLSGSP-LSNLLMSL----LKQPFPELRCAAYRLLQALAAQPWGQRE--ICSSPGFIEYLLDR 441 (503)
T ss_pred HHHHHHHhcCCc-hHHHHHHH----hcCCchHHHHHHHHHHHHHhcCHHHHHH--HHhCccHHhhhcCC
Confidence 00000011 11122222 2667789999999999987765 43210 01235777777655
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.57 E-value=0.006 Score=52.76 Aligned_cols=58 Identities=17% Similarity=0.372 Sum_probs=49.9
Q ss_pred cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhc
Q 001968 524 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIAR 583 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 583 (989)
.+|++.+++-++. ++.+++.+||..||.+|.++++.++..+.+|+++|+..+..+...
T Consensus 22 ~~~l~~Il~pVL~--~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 22 SKYLDEILPPVLK--CFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred HHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456666666665 888899999999999999999999999999999999999887754
No 38
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.49 E-value=2.4 Score=48.98 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhh-C-----hHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHH
Q 001968 415 VEYRKDLLVLLRSVGRV-A-----PEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 488 (989)
Q Consensus 415 ~~~R~~l~~~l~~i~~i-~-----~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~l 488 (989)
..||+-...+...+... + ..+.. -+...++.+++... -.+ -..|.+++.+...+... -+.+++++
T Consensus 730 e~yrkm~~etv~ri~~~lg~~diderleE-~lidgil~Afqeqt---t~d-~vml~gfg~V~~~lg~r----~kpylpqi 800 (1172)
T KOG0213|consen 730 EQYRKMVAETVSRIVGRLGAADIDERLEE-RLIDGILYAFQEQT---TED-SVMLLGFGTVVNALGGR----VKPYLPQI 800 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHH-HHHHHHHHHHHhcc---cch-hhhhhhHHHHHHHHhhc----cccchHHH
Confidence 36898888887777443 2 22222 23333444544211 111 12233444444433221 24688888
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccC--chHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh-hc
Q 001968 489 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQ--YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK-AK 565 (989)
Q Consensus 489 l~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~--~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~-~~ 565 (989)
++.++. ....+.+-|+....+++++.+..++...+ .+...=..|.+ .+.+..|.|-...-.|+..|+.... ..
T Consensus 801 ~stiL~--rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyE--ylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 801 CSTILW--RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYE--YLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHH--HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHH--hcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 887763 23345566777777899999999876422 22222222333 4555677888888888888887764 45
Q ss_pred chhhHHHHHHHhHhhhhcc
Q 001968 566 LVPFIENILQSLQDTIARF 584 (989)
Q Consensus 566 l~p~~~~il~~l~~~l~~~ 584 (989)
+.|-+.+|+..+.+++.+.
T Consensus 877 m~pPi~dllPrltPILknr 895 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNR 895 (1172)
T ss_pred cCCChhhhcccchHhhhhh
Confidence 7788888888888888643
No 39
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.08 E-value=0.64 Score=52.63 Aligned_cols=253 Identities=17% Similarity=0.210 Sum_probs=142.3
Q ss_pred hhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHh
Q 001968 563 KAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLD 642 (989)
Q Consensus 563 ~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~ 642 (989)
+..+.|++++++..+..++.... ..+..+++.++..++.... +...++...+++-+...+....++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~-----------s~ENeylMk~iMRvl~~~~---e~~~p~~~~il~~L~~il~~v~kN 82 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPG-----------SAENEYLMKCIMRVLSVLQ---EDILPIAVEILQHLTAILKEVSKN 82 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------------STC-HHHHHHHHHHHHHST---TTTGGGHHHHHHHHHHHHHHHHTS
T ss_pred HHHhhhhHHHHHHHHHHHHhcCC-----------CccchHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678999999999999886432 2467899999999998843 455566666666666666555433
Q ss_pred hhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCc-hHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHh
Q 001968 643 AKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPA-IGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVD 721 (989)
Q Consensus 643 ~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~ 721 (989)
+.++..- |.+..+++.+.|..... .+. ....-..++|.+..+++. +..+...++...+..+++
T Consensus 83 ------PsnP~Fn---HylFEsi~~lir~~~~~-----~~~~v~~~E~~L~P~f~~ILq~--dV~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 83 ------PSNPRFN---HYLFESIGALIRFVCEA-----DPEAVSQFEEALFPPFQEILQQ--DVQEFIPYVFQILAQLLE 146 (435)
T ss_dssp ---------HHHH---HHHHHHHHHHHHHS-GG-----GHH---HHHHHHHHHHHHHHHT--T-TTTHHHHHHHHHHHHH
T ss_pred ------CCCcchh---hhHHHHHHHHHHhccCC-----ChhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 2233332 23345666665543321 111 234556677888888873 334667788899998887
Q ss_pred hhc-ccccCchHHHHHHHHccC---ChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC
Q 001968 722 TLG-ASVFPYLPKALEQLLAES---EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNT 797 (989)
Q Consensus 722 ~l~-~~~~p~l~~l~~~ll~~~---~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 797 (989)
.-. +.+.+..-.+++.++.-. .....+....++..++.+....+.. .+-+.++++-.-.++.... .
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~--~~~l~~iLgvFQkLi~sk~--------~ 216 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVA--NNQLEPILGVFQKLIASKA--------N 216 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHHHHHHT-TT--------C
T ss_pred cCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcc--hhhHHHHHHHHHHHHCCCC--------c
Confidence 765 333333333444444321 2234577788888888887776421 1233344433333444311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 798 EEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 798 ~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
| ...|.++..++.+.+...+ .+++..++..++.-..+..-..-.|.-+.|++-+....
T Consensus 217 D---------~~gF~LL~~iv~~~p~~~l-----~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~ 274 (435)
T PF03378_consen 217 D---------HYGFDLLESIVENLPPEAL-----EPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY 274 (435)
T ss_dssp H---------HHHHHHHHHHHHHS-HHHH-----GGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred c---------hHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence 1 2257899999998876554 34788888877765544333333444455555554444
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.01 E-value=4 Score=47.72 Aligned_cols=360 Identities=13% Similarity=0.168 Sum_probs=168.7
Q ss_pred HHHHHHHh-hChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchh-hhhcccccHHHHHHHHHhCCCCCC
Q 001968 423 VLLRSVGR-VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE-AMRTGAGHLSELVPMLLQTKLPCH 500 (989)
Q Consensus 423 ~~l~~i~~-i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~-~~~~~~~~l~~ll~~ll~~~~~~~ 500 (989)
++++.+.. ..+....+-+.+.+...+.+ .+..-++.++..++.+.+.-... ..-.....++.++..+- +
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h---~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~------~ 130 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTH---PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR------D 130 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc------C
Confidence 44444432 23444444455555555443 55566676666555443322110 11112345555544332 3
Q ss_pred CCchHHHHHHHHHHhhHhhhhhccCchHHH-----HHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHH--HH
Q 001968 501 SNRLVALVYLETVTRYMKFIQEHTQYIPVV-----LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE--NI 573 (989)
Q Consensus 501 ~~~~v~~~~~~~lg~y~~~l~~~~~~L~~v-----l~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~--~i 573 (989)
++..|+-....++.+.++ ++..+..+ +..|.+ .+..++..+|-|+..++..+++.-...+ .++. .+
T Consensus 131 ~d~~Va~~A~~~L~~l~~----~~~~~~~l~~~~~~~~L~~--l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgl 203 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLAS----HPEGLEQLFDSNLLSKLKS--LMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGL 203 (503)
T ss_pred CcHHHHHHHHHHHHHHhC----CchhHHHHhCcchHHHHHH--HHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccH
Confidence 455553333223443332 22223222 333332 3334466799999999999887654433 2222 24
Q ss_pred HHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhh-
Q 001968 574 LQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEEST- 652 (989)
Q Consensus 574 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~- 652 (989)
++.+...+...+ . =-++...|.++.+... + .-.+|+.+ .-++..+...+.... +|+
T Consensus 204 l~~ll~eL~~dD---i--------Lvqlnalell~~La~~---~--~g~~yL~~--~gi~~~L~~~l~~~~-----~dp~ 260 (503)
T PF10508_consen 204 LDLLLKELDSDD---I--------LVQLNALELLSELAET---P--HGLQYLEQ--QGIFDKLSNLLQDSE-----EDPR 260 (503)
T ss_pred HHHHHHHhcCcc---H--------HHHHHHHHHHHHHHcC---h--hHHHHHHh--CCHHHHHHHHHhccc-----cCCc
Confidence 444444432211 0 1266778888877764 2 22445544 244555555554332 122
Q ss_pred hHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhh-ccccc---
Q 001968 653 AKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL-GASVF--- 728 (989)
Q Consensus 653 ~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l-~~~~~--- 728 (989)
-....+.+.+...+.++.. .+ +.+...+..++..+...++ ..+...+..+...++.+..+. |..++
T Consensus 261 ~~~~~l~g~~~f~g~la~~-~~-------~~v~~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igst~~G~~~L~~~ 330 (503)
T PF10508_consen 261 LSSLLLPGRMKFFGNLARV-SP-------QEVLELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGSTVEGKQLLLQK 330 (503)
T ss_pred ccchhhhhHHHHHHHHHhc-Ch-------HHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 1111234455666666643 21 1233344444444444433 456777888888888775443 43333
Q ss_pred --CchHHHHHHHHccCCh--hHH-HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHH-HH
Q 001968 729 --PYLPKALEQLLAESEP--KEM-AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEI-RE 802 (989)
Q Consensus 729 --p~l~~l~~~ll~~~~~--~~~-~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~ 802 (989)
+-+..++..+...... .++ ...|..++.+.......-.+-+. .+....|..+.+..... --.+-. ..
T Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~----~~~~~w~~~~~~~~~~~---~l~~~~~qP 403 (503)
T PF10508_consen 331 QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL----SITESWYESLSGSPLSN---LLMSLLKQP 403 (503)
T ss_pred cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH----HHHHHHHHHhcCCchHH---HHHHHhcCC
Confidence 2223333333222211 122 24456666665433221111111 33334444443321000 000000 14
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHH
Q 001968 803 VQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIM 839 (989)
Q Consensus 803 ~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il 839 (989)
+||+|-+.|+++..++.+.|..-.+. ...+++|.++
T Consensus 404 F~elr~a~~~~l~~l~~~~Wg~~~i~-~~~gfie~ll 439 (503)
T PF10508_consen 404 FPELRCAAYRLLQALAAQPWGQREIC-SSPGFIEYLL 439 (503)
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHH-hCccHHhhhc
Confidence 69999999999999999877644322 1244555433
No 41
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=9.3 Score=44.51 Aligned_cols=103 Identities=11% Similarity=0.128 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcc
Q 001968 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDE 537 (989)
Q Consensus 458 ~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~ 537 (989)
..|+++ +++.++..+.+.- ....-+.++.+|- ++.|+++--. ++-..+.|-..|+.|.+.++.|.+
T Consensus 123 ~ye~gi-AL~GLS~fvTpdL---ARDLa~Dv~tLL~------sskpYvRKkA---Il~lykvFLkYPeAlr~~FprL~E- 188 (877)
T KOG1059|consen 123 VYEVGL-ALSGLSCIVTPDL---ARDLADDVFTLLN------SSKPYVRKKA---ILLLYKVFLKYPEALRPCFPRLVE- 188 (877)
T ss_pred cchhhh-eecccccccCchh---hHHHHHHHHHHHh------cCchHHHHHH---HHHHHHHHHhhhHhHhhhHHHHHH-
Confidence 345555 4455555554431 0122344555432 4667774332 444446666678889999999998
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHH
Q 001968 538 RGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQ 575 (989)
Q Consensus 538 ~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~ 575 (989)
.+.+|+|+|+++|...+..+++..+....|..|.+..
T Consensus 189 -kLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffk 225 (877)
T KOG1059|consen 189 -KLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYK 225 (877)
T ss_pred -hccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHH
Confidence 9999999999999999999999988777776666544
No 42
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.95 E-value=0.056 Score=46.79 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc-cCchHHHHHHhhcc
Q 001968 459 VEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLAAFLDE 537 (989)
Q Consensus 459 ~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~-~~~L~~vl~~l~~~ 537 (989)
+-++|.++.+++.+++.. ....++.+++.++ ....++++.|+...+|.+...++..+.. -.+++.+++.+..
T Consensus 3 R~ggli~Laa~ai~l~~~----~~~~l~~Il~pVL--~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~k- 75 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD----ISKYLDEILPPVL--KCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCK- 75 (97)
T ss_pred hhHHHHHHHHHHHHchHh----HHHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 456788889888888765 3457778887777 3345788899888888899888887653 3478888888886
Q ss_pred cCCCCCCchhhhhHHHHHHHHH
Q 001968 538 RGIHHPNVHVSRRASYLFMRVV 559 (989)
Q Consensus 538 ~~l~~~~~~v~~~A~~al~~l~ 559 (989)
.+.++++.||..|+ .+-++.
T Consensus 76 -l~~D~d~~Vr~~a~-~Ld~ll 95 (97)
T PF12755_consen 76 -LSADPDENVRSAAE-LLDRLL 95 (97)
T ss_pred -HHcCCchhHHHHHH-HHHHHh
Confidence 77889999988774 444443
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=94.81 E-value=13 Score=45.19 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHHHHHHhc-CCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 001968 18 IDSMLKSQAVNFCQQIKE-TPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~ 93 (989)
.|.+.|+-..-||..+-+ .|+---++...|++ ++++.+|=.|+.+|-..-. + .+-+.++..+.+.
T Consensus 80 ~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~----~i~e~l~~~lkk~ 148 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------S----SVLEYTLEPLRRA 148 (746)
T ss_pred CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------H----HHHHHHHHHHHHH
Confidence 488889888888887766 66633344444433 3567899999888765311 1 2333444444443
Q ss_pred hhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCCh--hhHHHHHHhhcC-CchhHHHHHHHHHHHHHHHhhccCCCC
Q 001968 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWS--SVFVDFLPQLNK-GSMVIDMFCRVLNSLDDELISLDYPRT 170 (989)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp--~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Eev~~~~~~~~ 170 (989)
. ....++||++.+.++..++. ..|+.-+ ++++.+..++.. ++.+.-+.+..|..+.++-.+
T Consensus 149 L---------~D~~pYVRKtAalai~Kly~-~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~------ 212 (746)
T PTZ00429 149 V---------ADPDPYVRKTAAMGLGKLFH-DDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE------ 212 (746)
T ss_pred h---------cCCCHHHHHHHHHHHHHHHh-hCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch------
Confidence 2 13578999999999999954 4554221 345555555553 445666677777766554210
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCCh
Q 001968 171 ADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPE 250 (989)
Q Consensus 171 ~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~ 250 (989)
. + +..+.. +..++ ..|. ..++=....+|+++..|. |-+.-....++..+...|.. .++
T Consensus 213 ~--------l-~l~~~~-~~~Ll----~~L~---e~~EW~Qi~IL~lL~~y~---P~~~~e~~~il~~l~~~Lq~--~N~ 270 (746)
T PTZ00429 213 K--------I-ESSNEW-VNRLV----YHLP---ECNEWGQLYILELLAAQR---PSDKESAETLLTRVLPRMSH--QNP 270 (746)
T ss_pred h--------h-HHHHHH-HHHHH----HHhh---cCChHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHhcC--CCH
Confidence 0 0 011111 22221 2222 223334446677775543 22111112355555555542 467
Q ss_pred hHHhHHHHHHHHHHh
Q 001968 251 QFRGAAVGCVLAVVS 265 (989)
Q Consensus 251 ~~~~~a~~~l~~i~~ 265 (989)
.+.-+|+.++..+..
T Consensus 271 AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 271 AVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888876643
No 44
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.54 E-value=0.024 Score=37.33 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=24.2
Q ss_pred HHHhhcccCCCCCCchhhhhHHHHHHHHHHHh
Q 001968 531 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (989)
Q Consensus 531 l~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~ 562 (989)
++.++. ++.++++.||.+|+++|..|++.|
T Consensus 2 lp~l~~--~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQ--LLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHH--HHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH--HcCCCCHHHHHHHHHHHHHHHhhC
Confidence 455555 777899999999999999999875
No 45
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=13 Score=43.31 Aligned_cols=223 Identities=16% Similarity=0.233 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHH
Q 001968 75 SSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCR 153 (989)
Q Consensus 75 ~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~ 153 (989)
+++-.--|-+-++..+.+ ..+|||.|...++-.++. .||+.-...|+-+.+.+...+ .+......
T Consensus 138 TpdLARDLa~Dv~tLL~s-------------skpYvRKkAIl~lykvFL-kYPeAlr~~FprL~EkLeDpDp~V~SAAV~ 203 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNS-------------SKPYVRKKAILLLYKVFL-KYPEALRPCFPRLVEKLEDPDPSVVSAAVS 203 (877)
T ss_pred CchhhHHHHHHHHHHHhc-------------CchHHHHHHHHHHHHHHH-hhhHhHhhhHHHHHHhccCCCchHHHHHHH
Confidence 334333455556655543 467999999988888865 688877777788888776543 44444444
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccccccccccccc
Q 001968 154 VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAND 233 (989)
Q Consensus 154 iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~ 233 (989)
+ |||=. .. -+. ..+.- .|..+ .+|.. ++|.=+....++.+++.... .--.-.
T Consensus 204 V---ICELA-rK-nPk------------nyL~L--AP~ff----klltt--SsNNWmLIKiiKLF~aLtpl---EPRLgK 255 (877)
T KOG1059|consen 204 V---ICELA-RK-NPQ------------NYLQL--APLFY----KLLVT--SSNNWVLIKLLKLFAALTPL---EPRLGK 255 (877)
T ss_pred H---HHHHH-hh-CCc------------ccccc--cHHHH----HHHhc--cCCCeehHHHHHHHhhcccc---Cchhhh
Confidence 4 55533 11 111 11111 34444 55553 33333555666776664332 111113
Q ss_pred ccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcc--hhhhHhhh-h-hhhhhhccccCCcchHHHHHHHHHHHHHH
Q 001968 234 AFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQ--SKLNLLQT-L-QISRVFGLVSEDGESELVSKVAALLTGYA 309 (989)
Q Consensus 234 ~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~--~k~~li~~-l-~l~~~~~~~~~~~d~~~~~~~~~l~~~~~ 309 (989)
.+++-+.+++.+ ..-..--.+|++.++...|... +....++. + .+..++ .+.|... +-++.+ ..
T Consensus 256 KLieplt~li~s----T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fi----edsDqNL-KYlgLl---am 323 (877)
T KOG1059|consen 256 KLIEPITELMES----TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFI----EDSDQNL-KYLGLL---AM 323 (877)
T ss_pred hhhhHHHHHHHh----hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhh----hcCCccH-HHHHHH---HH
Confidence 456666665542 2222223456666665544221 22222221 1 122232 2334321 222211 11
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHH
Q 001968 310 MEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVA 363 (989)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~ 363 (989)
..+++.++ ..++....++++++.+.+.+++...+..+...+.
T Consensus 324 ~KI~ktHp------------~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 324 SKILKTHP------------KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHhhhCH------------HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 22333222 2344556788999998887777677776666554
No 46
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.28 E-value=12 Score=42.58 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=69.5
Q ss_pred cccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhcc--CchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHH
Q 001968 482 AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHT--QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVV 559 (989)
Q Consensus 482 ~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~--~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~ 559 (989)
+.+++.+++.++ ....++.|.|+....+++|..+..++..- ..|...=..|.+ .+.+..|.|-...-.|+..|.
T Consensus 599 kp~l~~ivStiL--~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE--~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 599 KPHLSMIVSTIL--KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYE--NLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred CcchHHHHHHHH--HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHH--hcCcccHHHHHHHHHHHHHHh
Confidence 467788888776 33345667787777788999999988643 334444444555 555667788777777777777
Q ss_pred HHhh-hcchhhHHHHHHHhHhhhhcc
Q 001968 560 KLLK-AKLVPFIENILQSLQDTIARF 584 (989)
Q Consensus 560 ~~~~-~~l~p~~~~il~~l~~~l~~~ 584 (989)
...+ ..+.|-+.+|+..+.+++.+.
T Consensus 675 sv~~~~~mqpPi~~ilP~ltPILrnk 700 (975)
T COG5181 675 SVHRFRSMQPPISGILPSLTPILRNK 700 (975)
T ss_pred hhhcccccCCchhhccccccHhhhhh
Confidence 7665 467888888888888888654
No 47
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.77 E-value=1 Score=49.37 Aligned_cols=174 Identities=11% Similarity=0.114 Sum_probs=108.4
Q ss_pred HHHhhHhhhhhccCchHHHHHHhhcccCCCC-CCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcc
Q 001968 512 TVTRYMKFIQEHTQYIPVVLAAFLDERGIHH-PNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYA 590 (989)
Q Consensus 512 ~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~-~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~ 590 (989)
+-|.++=|=++..+.|..+++ -+.+ .++..+..|-..+..+|+.=+..|..+.+-.+.++.+.-....
T Consensus 316 ~e~sfsvWeq~f~~iL~~l~E------vL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~----- 384 (516)
T KOG2956|consen 316 CEGSFSVWEQHFAEILLLLLE------VLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQ----- 384 (516)
T ss_pred HccchhHHHHHHHHHHHHHHH------HHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCc-----
Confidence 355666665443444444444 4433 4566788899999999998888888777766666655443211
Q ss_pred cccCCCCcch-hHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhc
Q 001968 591 SKELSGSEDG-SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALS 669 (989)
Q Consensus 591 ~~~~~~~~~~-~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~ 669 (989)
+.. ...-|.+..+++.. .|..+...+. |++.. .++++.+ -++.++.++.
T Consensus 385 -------~~v~~~Aeed~~~~las~--~P~~~I~~i~----~~Ilt-------------~D~~~~~----~~iKm~Tkl~ 434 (516)
T KOG2956|consen 385 -------DEVMRVAEEDCLTTLASH--LPLQCIVNIS----PLILT-------------ADEPRAV----AVIKMLTKLF 434 (516)
T ss_pred -------hhHHHHHHHHHHHHHHhh--CchhHHHHHh----hHHhc-------------CcchHHH----HHHHHHHHHH
Confidence 122 23456666666663 3444443322 22211 1123333 2345566666
Q ss_pred cCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhc-ccccCchHHHH
Q 001968 670 KGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKAL 735 (989)
Q Consensus 670 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~-~~~~p~l~~l~ 735 (989)
++++. ..+..+..+++|.+.+... ..+..+|..+..|+-.|+..+| +++.||+.++-
T Consensus 435 e~l~~-------EeL~~ll~diaP~~iqay~--S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 435 ERLSA-------EELLNLLPDIAPCVIQAYD--STSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred hhcCH-------HHHHHhhhhhhhHHHHHhc--CchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 55542 2466788888888877655 4567899999999999999999 88899987654
No 48
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.37 E-value=23 Score=42.67 Aligned_cols=211 Identities=15% Similarity=0.236 Sum_probs=115.0
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
+++..=|..+|. +...|-++...+-++-+.|+-.. .+.++. -...+|-+.++.+|.. +.+
T Consensus 123 ~~~d~yiE~lYe-----~~~ek~~~~~~il~La~~~~NL~---~l~~ne-------~l~~aL~RvLred~~k-s~~---- 182 (708)
T PF05804_consen 123 NDLDEYIELLYE-----DIPEKIRGTSLILQLARNPENLE---ELVQNE-------TLMSALARVLREDWKK-SVE---- 182 (708)
T ss_pred HHHHHHHHHHhc-----ccHHHHHHHHHHHHHhCCcchHH---HHHHhH-------HHHHHHHHHHHHHhhh-hHH----
Confidence 456666777775 22345556666667777666322 222221 2456677788888987 322
Q ss_pred HHHHHHHHHHhh--hhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcC--CCChhhHHHHHHhh----------------
Q 001968 82 IRESVFSMVCCE--LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYP--LIWSSVFVDFLPQL---------------- 141 (989)
Q Consensus 82 lr~~ll~~l~~~--~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p--~~Wp~~~~~l~~~~---------------- 141 (989)
+-..++.....+ |. .-.+-..+.|++.+...++-++.- +.|.+=+...-...
T Consensus 183 l~tnI~~iF~~fS~f~--------~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk 254 (708)
T PF05804_consen 183 LATNIIYIFFCFSNFS--------QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKK 254 (708)
T ss_pred HHHHHHHHHHHHHhHH--------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHH
Confidence 222332222211 11 113667888999998888766652 24533221111111
Q ss_pred -----cCCchhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 001968 142 -----NKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLD 216 (989)
Q Consensus 142 -----~~~~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~ 216 (989)
...+..+-..+.+|..++|+. ..+..|.. ..++..+..+|+ ..+.++...++.
T Consensus 255 ~~~l~~kQeqLlrv~~~lLlNLAed~----------------~ve~kM~~---~~iV~~Lv~~Ld---r~n~ellil~v~ 312 (708)
T PF05804_consen 255 LQTLIRKQEQLLRVAFYLLLNLAEDP----------------RVELKMVN---KGIVSLLVKCLD---RENEELLILAVT 312 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCh----------------HHHHHHHh---cCCHHHHHHHHc---CCCHHHHHHHHH
Confidence 111223334455566666654 12223332 234444556665 457788888888
Q ss_pred Hhhcccccc-ccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHH
Q 001968 217 CMRRYISWI-DINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVV 264 (989)
Q Consensus 217 ~l~~~i~wi-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~ 264 (989)
+++..--+- .-+.+.....++.+..++.. ++.++...|+..|..+.
T Consensus 313 fLkkLSi~~ENK~~m~~~giV~kL~kLl~s--~~~~l~~~aLrlL~NLS 359 (708)
T PF05804_consen 313 FLKKLSIFKENKDEMAESGIVEKLLKLLPS--ENEDLVNVALRLLFNLS 359 (708)
T ss_pred HHHHHcCCHHHHHHHHHcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhC
Confidence 887753321 12334457788888888863 56788888888876653
No 49
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.22 E-value=2.3 Score=43.92 Aligned_cols=158 Identities=13% Similarity=0.178 Sum_probs=83.1
Q ss_pred HHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHH
Q 001968 529 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIG 608 (989)
Q Consensus 529 ~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~ 608 (989)
.++..+.. .+.+....|...||.++..++..++..+.||++.++..+...+..... .-+....+++.
T Consensus 53 ~~~~~i~~--~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~-----------~i~~~a~~~L~ 119 (228)
T PF12348_consen 53 QLLDAIIK--QLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKK-----------FIREAANNALD 119 (228)
T ss_dssp ---HHHHH---S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---H-----------HHHHHHHHHHH
T ss_pred HhHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccH-----------HHHHHHHHHHH
Confidence 33344444 555555679999999999999999999999999999888777653210 11334455666
Q ss_pred HHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCch--HH
Q 001968 609 LLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAI--GL 686 (989)
Q Consensus 609 ~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~--~~ 686 (989)
.++...+ +...++.+.+. ..... .++.... ..+.++..+....+.. .+.+ ..
T Consensus 120 ~i~~~~~--------~~~~~~~~~l~---~~~~~-------Kn~~vR~---~~~~~l~~~l~~~~~~-----~~~l~~~~ 173 (228)
T PF12348_consen 120 AIIESCS--------YSPKILLEILS---QGLKS-------KNPQVRE---ECAEWLAIILEKWGSD-----SSVLQKSA 173 (228)
T ss_dssp HHHTTS---------H--HHHHHHHH---HHTT--------S-HHHHH---HHHHHHHHHHTT----------GGG--HH
T ss_pred HHHHHCC--------cHHHHHHHHHH---HHHhC-------CCHHHHH---HHHHHHHHHHHHccch-----Hhhhcccc
Confidence 6665522 11122111111 11111 1111111 2234444444444311 0111 22
Q ss_pred HHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccc
Q 001968 687 MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV 727 (989)
Q Consensus 687 ~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~ 727 (989)
.+.++.+.+...+. ..+.++|+.++.+|..+...+|+..
T Consensus 174 ~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 174 FLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 45667777776665 6678999999999999988887653
No 50
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=32 Score=42.78 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccc------ccccccccccccHHHHHHHHH-hcCCChhHHhH
Q 001968 183 AMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYIS------WIDINLIANDAFIPLLFELIL-ADGLPEQFRGA 255 (989)
Q Consensus 183 ~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~------wi~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~~ 255 (989)
.|+.. ++++++.+..+++ ..+.+..+++.++.||...+. |-. +...+.++..+. .....|.+|.+
T Consensus 86 vL~~k-Fs~~~~~l~~~~~-~~stn~svlr~~iscL~~lLraQd~~aW~~------~~t~~~~~~il~~~~h~~pkvRk~ 157 (1176)
T KOG1248|consen 86 VLQAK-FSDTLNILAPFLT-AESTNGSVLRLAISCLEDLLRAQDASAWSY------SSTKTELFGILAFAAHKKPKVRKA 157 (1176)
T ss_pred HHHHH-HHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHHHcchhhhcc------ccHHHHHHHHHHHHhcCchHHHHH
Confidence 46665 8888888888877 235677788889999887664 751 222333333221 11368999999
Q ss_pred HHHHHHHHHhcC
Q 001968 256 AVGCVLAVVSKR 267 (989)
Q Consensus 256 a~~~l~~i~~~~ 267 (989)
|.+.+..|+...
T Consensus 158 a~~~i~~VL~~p 169 (1176)
T KOG1248|consen 158 AQRGIAAVLKGP 169 (1176)
T ss_pred HHHHHHHHHcCC
Confidence 999999999754
No 51
>PRK09687 putative lyase; Provisional
Probab=92.28 E-value=13 Score=39.72 Aligned_cols=193 Identities=11% Similarity=0.025 Sum_probs=116.6
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRE 84 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~ 84 (989)
...+..+.++ |...|..|...|.++. .++.+..+..++. +.++.+|.+|+..|-..-. +...+...-.
T Consensus 26 ~~L~~~L~d~----d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~------~~~~~~~a~~ 93 (280)
T PRK09687 26 DELFRLLDDH----NSLKRISSIRVLQLRG-GQDVFRLAIELCS-SKNPIERDIGADILSQLGM------AKRCQDNVFN 93 (280)
T ss_pred HHHHHHHhCC----CHHHHHHHHHHHHhcC-cchHHHHHHHHHh-CCCHHHHHHHHHHHHhcCC------CccchHHHHH
Confidence 3444455665 8889999999998765 5778888888765 4578999999999886311 1110111222
Q ss_pred HHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-chhHHHHHHHHHHHHHHHh
Q 001968 85 SVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELI 163 (989)
Q Consensus 85 ~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Eev~ 163 (989)
.|...+.+ .....||...+.++..+.. .-+...+.++..+....... +.+.......|..+
T Consensus 94 ~L~~l~~~------------D~d~~VR~~A~~aLG~~~~-~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----- 155 (280)
T PRK09687 94 ILNNLALE------------DKSACVRASAINATGHRCK-KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----- 155 (280)
T ss_pred HHHHHHhc------------CCCHHHHHHHHHHHhcccc-cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----
Confidence 22222222 3567899999999988732 22223466666655554433 22333333332211
Q ss_pred hccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHH
Q 001968 164 SLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELI 243 (989)
Q Consensus 164 ~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l 243 (989)
.-+..+..+...|. +.++.+...+..+|+.. + ..++..++.+...+
T Consensus 156 ------------------------~~~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~----~---~~~~~~~~~L~~~L 201 (280)
T PRK09687 156 ------------------------NDEAAIPLLINLLK---DPNGDVRNWAAFALNSN----K---YDNPDIREAFVAML 201 (280)
T ss_pred ------------------------CCHHHHHHHHHHhc---CCCHHHHHHHHHHHhcC----C---CCCHHHHHHHHHHh
Confidence 01223333335554 56778888999998864 1 12345677777877
Q ss_pred HhcCCChhHHhHHHHHHHHH
Q 001968 244 LADGLPEQFRGAAVGCVLAV 263 (989)
Q Consensus 244 ~~~~~~~~~~~~a~~~l~~i 263 (989)
.+ .++.+|..|+..|..+
T Consensus 202 ~D--~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 202 QD--KNEEIRIEAIIGLALR 219 (280)
T ss_pred cC--CChHHHHHHHHHHHcc
Confidence 63 6889999999888653
No 52
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.06 E-value=59 Score=44.07 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=122.9
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCc-----------hHHHHHHHhccCCchHHHHHHHHHHHHHHhhhc
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPS-----------ICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKY 71 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~-----------~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w 71 (989)
++...|+.+-+++ ++++.|++|-..|..|-+..+ +-.....+|.+ .++.+|--|+.+|.+.=.+
T Consensus 14 ~v~~Lve~L~s~~--ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 14 SVAQCIEQLRAKS--SSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHccc--CCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC--
Confidence 4667777777653 467888888888887776443 23334455543 4577888888777655221
Q ss_pred CCCCHHHHH-HHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhc-CCCC------hhhHHHHHHhhcC
Q 001968 72 TSMSSEERN-LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEY-PLIW------SSVFVDFLPQLNK 143 (989)
Q Consensus 72 ~~l~~~~~~-~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~-p~~W------p~~~~~l~~~~~~ 143 (989)
++-|. -++...+.-+..... .+..-.|...+.+|-.|....- ...| +..++-|+..+++
T Consensus 89 ----e~nk~~Iv~~GaIppLV~LL~---------sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~ 155 (2102)
T PLN03200 89 ----EDLRVKVLLGGCIPPLLSLLK---------SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQP 155 (2102)
T ss_pred ----HHHHHHHHHcCChHHHHHHHH---------CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhC
Confidence 12221 112222222322211 1345677777778887765321 1234 4567778888776
Q ss_pred Cch----hHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 001968 144 GSM----VIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMR 219 (989)
Q Consensus 144 ~~~----~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~ 219 (989)
+.. .......+|..|+-. ..+ ..+..+....++.++. .|. +.++.+...+..++.
T Consensus 156 gsk~d~~L~~~Av~AL~nLs~~---------~en-----~~~~IIeaGaVp~LV~----LLs---S~d~~lQ~eAa~aLa 214 (2102)
T PLN03200 156 GNKQDKVVEGLLTGALRNLCGS---------TDG-----FWSATLEAGGVDILVK----LLS---SGNSDAQANAASLLA 214 (2102)
T ss_pred CchhhHHHHHHHHHHHHHHhcC---------ccc-----hHHHHHHcCCHHHHHH----HHc---CCCHHHHHHHHHHHH
Confidence 531 112223444443321 110 0111222223555553 333 345666666666554
Q ss_pred cccccc--ccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 220 RYISWI--DINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 220 ~~i~wi--~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
....-. ....+.+...++.+.+++.. .+++.+++.|+-+|..|.+.
T Consensus 215 ~Lass~ee~~~aVIeaGaVP~LV~LL~s-g~~~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 215 RLMMAFESSISKVLDAGAVKQLLKLLGQ-GNEVSVRAEAAGALEALSSQ 262 (2102)
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHcc-CCChHHHHHHHHHHHHHhcC
Confidence 433221 23445567889999998863 24568999999999999874
No 53
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.91 E-value=28 Score=39.95 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=93.1
Q ss_pred cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHH---Hhhh-cchhhHHHHHHHhHhhhhccccCCcccccCCCCcc
Q 001968 524 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK---LLKA-KLVPFIENILQSLQDTIARFTSMNYASKELSGSED 599 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~---~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~ 599 (989)
..|++.++.-++. .+.++.|.||.+|+.+...+++ .|.. .+..++..|+ .+.+.... ++-
T Consensus 599 kp~l~~ivStiL~--~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iL---yE~lge~y-----------pEv 662 (975)
T COG5181 599 KPHLSMIVSTILK--LLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNIL---YENLGEDY-----------PEV 662 (975)
T ss_pred CcchHHHHHHHHH--HhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHH---HHhcCccc-----------HHH
Confidence 4678888888887 7888899999999888766664 4543 4445555542 22332110 122
Q ss_pred hhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCC
Q 001968 600 GSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTS 679 (989)
Q Consensus 600 ~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~ 679 (989)
--.+..|+..+.+.... ..-.+-+..+++.+..-+.+- . +.+ ....+..++.|++.-+.+.
T Consensus 663 Lgsil~Ai~~I~sv~~~--~~mqpPi~~ilP~ltPILrnk----------h--~Kv--~~nti~lvg~I~~~~peyi--- 723 (975)
T COG5181 663 LGSILKAICSIYSVHRF--RSMQPPISGILPSLTPILRNK----------H--QKV--VANTIALVGTICMNSPEYI--- 723 (975)
T ss_pred HHHHHHHHHHHhhhhcc--cccCCchhhccccccHhhhhh----------h--HHH--hhhHHHHHHHHHhcCcccC---
Confidence 34567777777776432 222222333332222211110 0 011 1123455677765433321
Q ss_pred CcCchHHHHHHHHHHHHHHhhcC-CCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCC
Q 001968 680 SRPAIGLMFKQTLDVLLQILVVF-PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE 743 (989)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~ 743 (989)
. ..+.|.+-..+++.. ..+.++|..+...|+.+.+..|+ ..++..|+....
T Consensus 724 ---~----~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLk 775 (975)
T COG5181 724 ---G----VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLK 775 (975)
T ss_pred ---C----HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcch
Confidence 1 123333322222211 33678999999999999999997 456677777664
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=91.86 E-value=38 Score=41.39 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhChHHHHH-HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhC
Q 001968 417 YRKDLLVLLRSVGRVAPEVTQV-FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (989)
Q Consensus 417 ~R~~l~~~l~~i~~i~~~~~l~-~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~ 495 (989)
-|+...-.+-.++...|+.+.. -+.+.+...+. ..+..-+=.|+.++..+.+..+.. ..-....+..++..+
T Consensus 156 VRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~---D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L--- 228 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN---DNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHL--- 228 (746)
T ss_pred HHHHHHHHHHHHHhhCcccccccchHHHHHHHhc---CCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHh---
Confidence 4666655566666666654321 11223333333 255666667777777665544321 110112233333322
Q ss_pred CCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHh
Q 001968 496 KLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (989)
Q Consensus 496 ~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~ 562 (989)
++. .+..++..++++.+|. ....+-...+++.+.. .+++.++.|.-.|+.++..+...+
T Consensus 229 --~e~-~EW~Qi~IL~lL~~y~---P~~~~e~~~il~~l~~--~Lq~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 229 --PEC-NEWGQLYILELLAAQR---PSDKESAETLLTRVLP--RMSHQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred --hcC-ChHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcCcC
Confidence 221 2344444445565543 1223335677777776 677788999999999998887554
No 55
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=29 Score=39.28 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=64.5
Q ss_pred chhhhhHHHHHHHHHHH-hhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHH
Q 001968 545 VHVSRRASYLFMRVVKL-LKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSD 623 (989)
Q Consensus 545 ~~v~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~ 623 (989)
..+..-|..++..++++ .+..++..-+.++.-...+.+...++. +.++..+..++.|+. +++.+..+.+++..
T Consensus 311 ~~L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~-----i~s~p~~~~lmkaLv-l~gfa~~d~e~~~n 384 (748)
T KOG4541|consen 311 TALVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLS-----IFSPPLMEALMKALV-LWGFAYLDLEEECN 384 (748)
T ss_pred hhhhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCccc-----ccCchHHHHHHHHHH-HHHHHHhhHHHHHH
Confidence 34555566666666665 444444444444443333333221111 112345666777665 33443346688889
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccC
Q 001968 624 YLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKG 671 (989)
Q Consensus 624 ~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~ 671 (989)
+...++.|+-+++-...++... .+...+|.-.+.+.+.++++
T Consensus 385 ~~~~~LqpL~~Rf~~~~nq~~q------~~~~~~Ii~~l~~~~g~a~a 426 (748)
T KOG4541|consen 385 LGSNKLQPLPSRFFTYFNQHNQ------GKFVLDIIVRLSLTSGTAYA 426 (748)
T ss_pred HHHhhccccHHHHHHHhcccch------hhHHHHHHHHHHHhcccccc
Confidence 9999999999998888765432 12334455556666666654
No 56
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=14 Score=42.14 Aligned_cols=257 Identities=15% Similarity=0.171 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhhChHHHHHHH----HHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchh-hhhcccccHHHHHHHH
Q 001968 418 RKDLLVLLRSVGRVAPEVTQVFI----RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE-AMRTGAGHLSELVPML 492 (989)
Q Consensus 418 R~~l~~~l~~i~~i~~~~~l~~i----~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~-~~~~~~~~l~~ll~~l 492 (989)
+.+..-.+-+|++-..+.+..++ .+.+-+.+.+ ++-.-.|-|+.+++.++--.+.. +.--....+..++..+
T Consensus 127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s---~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l 203 (514)
T KOG0166|consen 127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS---PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL 203 (514)
T ss_pred HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC---CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh
Confidence 34455566677665444433222 1222233333 55566777787776555443321 1111224566666654
Q ss_pred HhCCCCCCCCchH-HHHHHHHHHhhHhhhhhccC--chHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhh
Q 001968 493 LQTKLPCHSNRLV-ALVYLETVTRYMKFIQEHTQ--YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 569 (989)
Q Consensus 493 l~~~~~~~~~~~v-~~~~~~~lg~y~~~l~~~~~--~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~ 569 (989)
.. ..+-..+ .+++ +++.+++--...|. .+..+|+.|+. .+++.++.|..-||+|+..+++.-.+.+.-.
T Consensus 204 ~~----~~~~~~lRn~tW--~LsNlcrgk~P~P~~~~v~~iLp~L~~--ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v 275 (514)
T KOG0166|consen 204 NK----SDKLSMLRNATW--TLSNLCRGKNPSPPFDVVAPILPALLR--LLHSTDEEVLTDACWALSYLTDGSNEKIQMV 275 (514)
T ss_pred cc----ccchHHHHHHHH--HHHHHHcCCCCCCcHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 31 1111234 3666 78888877666554 58899999986 8888999999999999999996544333111
Q ss_pred -HHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCC
Q 001968 570 -IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNP 648 (989)
Q Consensus 570 -~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~ 648 (989)
--.++..+.+++.... ..-+.-.+.++|.|+.. +.+.....+.. +.+..+..++... .
T Consensus 276 i~~gvv~~LV~lL~~~~-----------~~v~~PaLRaiGNIvtG---~d~QTq~vi~~---~~L~~l~~ll~~s----~ 334 (514)
T KOG0166|consen 276 IDAGVVPRLVDLLGHSS-----------PKVVTPALRAIGNIVTG---SDEQTQVVINS---GALPVLSNLLSSS----P 334 (514)
T ss_pred HHccchHHHHHHHcCCC-----------cccccHHHhhccceeec---cHHHHHHHHhc---ChHHHHHHHhccC----c
Confidence 0112233333443211 11234567889987766 33333333332 2233333443321 1
Q ss_pred chhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHH-HHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHh
Q 001968 649 EESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVD 721 (989)
Q Consensus 649 ~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~ 721 (989)
++. ...+ ..-.++.|+.|=. .++..++ ..++|.+..+++. .+..+|..++-++..+..
T Consensus 335 ~~~--ikkE---AcW~iSNItAG~~--------~qiqaVida~l~p~Li~~l~~--~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 335 KES--IKKE---ACWTISNITAGNQ--------EQIQAVIDANLIPVLINLLQT--AEFDIRKEAAWAISNLTS 393 (514)
T ss_pred chh--HHHH---HHHHHHHhhcCCH--------HHHHHHHHcccHHHHHHHHhc--cchHHHHHHHHHHHhhcc
Confidence 111 1111 2344566654332 1233322 2567777777764 335677667776666543
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.43 E-value=5.2 Score=41.24 Aligned_cols=138 Identities=15% Similarity=0.172 Sum_probs=83.7
Q ss_pred hHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChh--HH-HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhh
Q 001968 707 PLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK--EM-AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNI 783 (989)
Q Consensus 707 ~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~--~~-~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~ 783 (989)
.+...+|.++..++..+|..+.|+++.+++.|+..+..+ .+ .....++..++...+ +...++.. .+...
T Consensus 68 ~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~---~l~~~ 139 (228)
T PF12348_consen 68 KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLE---ILSQG 139 (228)
T ss_dssp -HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHH---HHHHH
Confidence 455669999999999999999999999999998865321 11 122233444444333 11111111 12222
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC--CccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHH
Q 001968 784 IPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDL--SSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQI 861 (989)
Q Consensus 784 l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~--~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~ 861 (989)
... -.|.+|.....++..++.... ...+ .. ...++.+...+..+. ..+++++++.|-..
T Consensus 140 ~~~---------------Kn~~vR~~~~~~l~~~l~~~~~~~~~l-~~--~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~ 200 (228)
T PF12348_consen 140 LKS---------------KNPQVREECAEWLAIILEKWGSDSSVL-QK--SAFLKQLVKALVKLL-SDADPEVREAAREC 200 (228)
T ss_dssp TT----------------S-HHHHHHHHHHHHHHHTT-----GGG-----HHHHHHHHHHHHHHH-TSS-HHHHHHHHHH
T ss_pred HhC---------------CCHHHHHHHHHHHHHHHHHccchHhhh-cc--cchHHHHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 222 468899999999999988765 2222 11 112455666665555 77999999999999
Q ss_pred HHHHHHHhhC
Q 001968 862 FIRLIKDWCA 871 (989)
Q Consensus 862 l~~~i~~~~~ 871 (989)
+..+...|+.
T Consensus 201 ~~~l~~~~~~ 210 (228)
T PF12348_consen 201 LWALYSHFPE 210 (228)
T ss_dssp HHHHHHHH-H
T ss_pred HHHHHHHCCH
Confidence 9999998864
No 58
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.68 E-value=95 Score=42.29 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC----hhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 001968 107 PAFIRNKLAQVLVTLIYFEYPLIW----SSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIK 181 (989)
Q Consensus 107 ~~~v~~kl~~~la~l~~~~~p~~W----p~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~ 181 (989)
..-+++..+.++..|+...-.+.| ...++-++++++++. ...+....+|..|+-. ..+.+
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~---------------~~qir 523 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH---------------SEDIR 523 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---------------cHHHH
Confidence 456777777778777542111234 467777888876543 3333334443333210 01122
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHH
Q 001968 182 DAMRQ-QCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCV 260 (989)
Q Consensus 182 ~~l~~-~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l 260 (989)
..+.. ..++.++ .+|. +.+++....++.++.+.+.--+ .+.++.+..++. .+++.....+++.+
T Consensus 524 ~iV~~aGAIppLV----~LL~---sgd~~~q~~Aa~AL~nLi~~~d------~~~I~~Lv~LLl--sdd~~~~~~aL~vL 588 (2102)
T PLN03200 524 ACVESAGAVPALL----WLLK---NGGPKGQEIAAKTLTKLVRTAD------AATISQLTALLL--GDLPESKVHVLDVL 588 (2102)
T ss_pred HHHHHCCCHHHHH----HHHh---CCCHHHHHHHHHHHHHHHhccc------hhHHHHHHHHhc--CCChhHHHHHHHHH
Confidence 23321 2355544 4454 4567777888888877644322 334455556664 25678888888887
Q ss_pred HHHHhc
Q 001968 261 LAVVSK 266 (989)
Q Consensus 261 ~~i~~~ 266 (989)
..++..
T Consensus 589 gnIlsl 594 (2102)
T PLN03200 589 GHVLSV 594 (2102)
T ss_pred HHHHhh
Confidence 776653
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=52 Score=39.25 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHH---HHHHH
Q 001968 435 VTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVA---LVYLE 511 (989)
Q Consensus 435 ~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~---~~~~~ 511 (989)
.++-.+.+.+.+-+.+ -.+.+.++ ++.++|..++.+...+ ..|++-. ++ .+++|+|+ +++
T Consensus 103 dvllLltNslknDL~s-----~nq~vVgl-AL~alg~i~s~Emard---lapeVe~-Ll-----~~~~~~irKKA~Lc-- 165 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNS-----SNQYVVGL-ALCALGNICSPEMARD---LAPEVER-LL-----QHRDPYIRKKAALC-- 165 (866)
T ss_pred HHHHHHHHHHHhhccC-----CCeeehHH-HHHHhhccCCHHHhHH---hhHHHHH-HH-----hCCCHHHHHHHHHH--
Confidence 3444556666665543 23445555 6688888887753221 2233222 22 35778883 332
Q ss_pred HHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc---hhhHHHHHHHhHhhhhccccCC
Q 001968 512 TVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL---VPFIENILQSLQDTIARFTSMN 588 (989)
Q Consensus 512 ~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l---~p~~~~il~~l~~~l~~~~~~~ 588 (989)
. .+++...|+.....++..-. .+.+.+.+|-..+...+.++|+.....+ -..++.++..+.++....-+.+
T Consensus 166 -a---~r~irK~P~l~e~f~~~~~~--lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspe 239 (866)
T KOG1062|consen 166 -A---VRFIRKVPDLVEHFVIAFRK--LLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPE 239 (866)
T ss_pred -H---HHHHHcCchHHHHhhHHHHH--HHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 2 36777788887777777766 6777888999999889999998754333 2345666666666554332111
Q ss_pred cccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHH
Q 001968 589 YASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLT 630 (989)
Q Consensus 589 ~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~ 630 (989)
.--..+..+.-|..+..-++.+ +. +..+..+.+.-++.
T Consensus 240 ydv~gi~dPFLQi~iLrlLriL-Gq---~d~daSd~M~DiLa 277 (866)
T KOG1062|consen 240 YDVHGISDPFLQIRILRLLRIL-GQ---NDADASDLMNDILA 277 (866)
T ss_pred cCccCCCchHHHHHHHHHHHHh-cC---CCccHHHHHHHHHH
Confidence 0001112234466666655533 33 23444455444443
No 60
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=66 Score=39.81 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCC--CC-chHHHHHHHHHHhhHhh-------------
Q 001968 456 VEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCH--SN-RLVALVYLETVTRYMKF------------- 519 (989)
Q Consensus 456 w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~--~~-~~v~~~~~~~lg~y~~~------------- 519 (989)
-.-++||.|.+.+++.+-...+++ .++.++.+.|+...+.+. .- ++.+..+.|.+||...+
T Consensus 442 ~~VRDaAcY~~WAf~Rays~~~l~---p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~ 518 (1133)
T KOG1943|consen 442 QHVRDAACYVCWAFARAYSPSDLK---PVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYF 518 (1133)
T ss_pred cchHHHHHHHHHHHHhcCChhhhh---HHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchh
Confidence 456899999999999998776554 255666666554332221 11 22245566677774433
Q ss_pred ---------------hhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch-hhHHHHHHHh
Q 001968 520 ---------------IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV-PFIENILQSL 577 (989)
Q Consensus 520 ---------------l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~-p~~~~il~~l 577 (989)
++..+.|..++++-++. .-+.+=++.+|..|++++.++...-.+.+. -++++++...
T Consensus 519 sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t-~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ 591 (1133)
T KOG1943|consen 519 SVTNRSNCYLDLCVSIAEFSGYREPVFNHLLT-KKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST 591 (1133)
T ss_pred hhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHh-cccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh
Confidence 23467889999999886 235555678999999999999998888876 4677776544
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.48 E-value=51 Score=37.57 Aligned_cols=183 Identities=17% Similarity=0.211 Sum_probs=109.9
Q ss_pred cCchHHHHHHhhcccCC-CCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhH
Q 001968 524 TQYIPVVLAAFLDERGI-HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 602 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l-~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 602 (989)
.+.+..++..+.. -+ ....+..+.++...+.=++|..--.-.|....+++.+..++... +-...
T Consensus 224 ~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~-------------~~g~~ 288 (415)
T PF12460_consen 224 DDDLDEFLDSLLQ--SISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP-------------ELGQQ 288 (415)
T ss_pred hhhHHHHHHHHHh--hhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh-------------hhHHH
Confidence 3467788887776 33 22344567777777777777755444577777777777766532 12345
Q ss_pred HHHHHHHHHccCC-C-----ChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCC
Q 001968 603 IFEAIGLLIGMED-V-----PPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERL 676 (989)
Q Consensus 603 l~eai~~li~~~~-~-----~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~ 676 (989)
+-++++.+++-.+ . ....|.-|=+++..-++..+.+..... +.+ . -...+.+++.+.+..+.
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~----~~~---~---k~~yL~ALs~ll~~vP~-- 356 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA----DDE---I---KSNYLTALSHLLKNVPK-- 356 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc----Chh---h---HHHHHHHHHHHHhhCCH--
Confidence 5667776666511 0 112333333344333333333322211 111 0 02345677777765542
Q ss_pred cCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHc
Q 001968 677 VTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLA 740 (989)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~ 740 (989)
+...+-+.+++|++.+.++ ..+.+++..+...+..+++.-.+-+.+++..+++.+++
T Consensus 357 -----~vl~~~l~~LlPLLlqsL~--~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 357 -----SVLLPELPTLLPLLLQSLS--LPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred -----HHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 2355778889999998885 34557888888888888877766678899999888875
No 62
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=88.40 E-value=2.3 Score=41.36 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=64.8
Q ss_pred hHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH-hhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHH
Q 001968 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-LKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE 605 (989)
Q Consensus 527 L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~e 605 (989)
....|..+++ |+++....-+--|-..+..+.+. ....+.|.+++++.-+...+.... ++-.....+
T Consensus 36 y~~~Lpif~d--GL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~-----------~~V~~~~L~ 102 (183)
T PF10274_consen 36 YHHYLPIFFD--GLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRD-----------PEVFCATLK 102 (183)
T ss_pred hhhHHHHHHh--hhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHH
Confidence 3466777888 99876666777788888888888 778899999999999999886442 123445566
Q ss_pred HHHHHHccCCCChhhHHHHHHHhHHHH
Q 001968 606 AIGLLIGMEDVPPEKQSDYLSSLLTPL 632 (989)
Q Consensus 606 ai~~li~~~~~~~~~~~~~l~~ll~pl 632 (989)
++..++.+.+.-.+.-.+|+.+++.++
T Consensus 103 ~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 103 ALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 666665443323356667777765443
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.25 E-value=0.4 Score=36.56 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=32.4
Q ss_pred HHHhhHhhhhhc-cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHH
Q 001968 512 TVTRYMKFIQEH-TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV 558 (989)
Q Consensus 512 ~lg~y~~~l~~~-~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l 558 (989)
.+|+.+.-.... ..+++.+++.|.. .+.++++.||..||++|.+|
T Consensus 10 aLg~l~~~~~~~~~~~~~~~~~~L~~--~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 10 ALGRLAEGCPELLQPYLPELLPALIP--LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHCTTTTTHHHHHHHHHHHHHHHHH--HTTSSSHHHHHHHHHHHHCH
T ss_pred HHhhHhcccHHHHHHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHhcC
Confidence 577644322221 2378888888887 88888889999999998654
No 64
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.92 E-value=5.1 Score=35.38 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHH-HHHHHHHHHHHHhhhh-hHHHHHHhHHHHH
Q 001968 709 RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMA-GFLVLLNQLICKFNTL-VHDILDEVFPAIA 777 (989)
Q Consensus 709 ~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~-~~L~l~~~li~~~~~~-~~~~l~~~~~~l~ 777 (989)
+.++.+.++.|++..|+.+..++|+++..|....+.+++. ..+.++..++.....+ ..+.+++++..++
T Consensus 32 k~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 32 KKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAIL 102 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5568888999999999999999999999998888776654 4578888888887765 5555555554443
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=67 Score=38.25 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhChHHHHHH-HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhC
Q 001968 417 YRKDLLVLLRSVGRVAPEVTQVF-IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (989)
Q Consensus 417 ~R~~l~~~l~~i~~i~~~~~l~~-i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~ 495 (989)
-|+.+.........++++.+-.- +...+.+.+. ..+...+-.|+.+++.+.|.-+... ......++...++..
T Consensus 137 vRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI~e~~~~~~---~~~l~~~~~~~lL~a 210 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS---DSNPMVVANALAALSEIHESHPSVN---LLELNPQLINKLLEA 210 (734)
T ss_pred HHHHHHHHHHHhhcCChhhccccchhHHHHHHhc---CCCchHHHHHHHHHHHHHHhCCCCC---cccccHHHHHHHHHH
Confidence 45666666666666666544221 2334444443 2455666667766666665543210 001112222222210
Q ss_pred CCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh
Q 001968 496 KLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA 564 (989)
Q Consensus 496 ~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~ 564 (989)
+... ..--++. ++....+|....+.-+..+++.+.. .+.+.++.|.-.|...++.+.+....
T Consensus 211 -l~ec-~EW~qi~---IL~~l~~y~p~d~~ea~~i~~r~~p--~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 211 -LNEC-TEWGQIF---ILDCLAEYVPKDSREAEDICERLTP--RLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred -HHHh-hhhhHHH---HHHHHHhcCCCCchhHHHHHHHhhh--hhccCCcceEeehHHHHHHHHHHHHH
Confidence 0000 0001122 2444444444444346677777776 67777888999999999888876655
No 66
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.84 E-value=4.1 Score=35.96 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=58.8
Q ss_pred hhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHH
Q 001968 547 VSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS 626 (989)
Q Consensus 547 v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~ 626 (989)
-+.+|-.++..+.+-+++++.++.++|+..++..+... +-+...+++-..++.. +++++-.+.++
T Consensus 31 ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~-------------eL~~~al~~W~~~i~~--L~~~~l~~ll~ 95 (107)
T smart00802 31 EKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP-------------ELRSLALRCWHVLIKT--LKEEELGPLLD 95 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-------------hHHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 38899999999999999999999999999998887532 2356778888888888 55666666667
Q ss_pred HhHHHHHHHH
Q 001968 627 SLLTPLCQQV 636 (989)
Q Consensus 627 ~ll~pl~~~l 636 (989)
+++.-+.+.|
T Consensus 96 ~~~~~i~~~~ 105 (107)
T smart00802 96 QIFAAILPLW 105 (107)
T ss_pred HHHHHHHHhc
Confidence 6666665554
No 67
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.69 E-value=3.3 Score=36.75 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=62.4
Q ss_pred CchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHH
Q 001968 544 NVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSD 623 (989)
Q Consensus 544 ~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~ 623 (989)
...-+.+|-.++..+.+-+++.+.++.++|+..++..+... +-+...+++-..++.. +++++-.+
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~-------------~l~~~al~~W~~fi~~--L~~~~l~~ 92 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP-------------ELREEALSCWNCFIKT--LDEEDLGP 92 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh-------------hhHHHHHHHHHHHHHH--CCHHHHHH
Confidence 34568999999999999999999999999999998887532 2355668888888888 56677777
Q ss_pred HHHHhHHHHHHHHH
Q 001968 624 YLSSLLTPLCQQVQ 637 (989)
Q Consensus 624 ~l~~ll~pl~~~l~ 637 (989)
++.+++..+++.|.
T Consensus 93 ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 93 LLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHHhcc
Confidence 77777777766553
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.60 E-value=0.35 Score=36.89 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=35.3
Q ss_pred chhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhc
Q 001968 545 VHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIAR 583 (989)
Q Consensus 545 ~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 583 (989)
|.||..|+.+|-++++.+...+.|+++.++..+...+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d 39 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD 39 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999988853
No 69
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.47 E-value=88 Score=39.22 Aligned_cols=173 Identities=16% Similarity=0.239 Sum_probs=98.4
Q ss_pred HHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHH-----hhhccc-----ccCch
Q 001968 662 IMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV-----DTLGAS-----VFPYL 731 (989)
Q Consensus 662 l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~-----~~l~~~-----~~p~l 731 (989)
+.++.++-+..+.+ ++.-+.+.+-++++.. . +.+..-|.....++..|. .-.|.+ +.+|+
T Consensus 718 l~~L~~L~~~~~~e-------~~~~i~k~I~EvIL~~-K--e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 718 LKCLKRLLKLLSAE-------HCDLIPKLIPEVILSL-K--EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred HHHHHHHHHhccHH-------HHHHHHHHHHHHHHhc-c--cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 35555665554421 2344566666666643 2 334445554444444443 222322 12333
Q ss_pred HHHHHHHHccCChhHHHHH-HHHHHHHHHHhhhhh-HHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHH
Q 001968 732 PKALEQLLAESEPKEMAGF-LVLLNQLICKFNTLV-HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRT 809 (989)
Q Consensus 732 ~~l~~~ll~~~~~~~~~~~-L~l~~~li~~~~~~~-~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~ 809 (989)
+.|-..++. +...+... |..++.++.+|++.+ .+.+. .+++.+-..|.+ ..|+++++
T Consensus 788 ~~Isagl~g--d~~~~~as~Ivai~~il~e~~~~ld~~~l~----~li~~V~~~L~s---------------~sreI~ka 846 (1176)
T KOG1248|consen 788 SIISAGLVG--DSTRVVASDIVAITHILQEFKNILDDETLE----KLISMVCLYLAS---------------NSREIAKA 846 (1176)
T ss_pred HHHHhhhcc--cHHHHHHHHHHHHHHHHHHHhccccHHHHH----HHHHHHHHHHhc---------------CCHHHHHH
Confidence 333333222 22333322 677778888888763 33343 344444455554 56899999
Q ss_pred HHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhC
Q 001968 810 LYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 810 ~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~ 871 (989)
...|+..++..-+... + .++.+.+|.+++... ......+++..-.++..++..++.
T Consensus 847 AI~fikvlv~~~pe~~-l----~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 847 AIGFIKVLVYKFPEEC-L----SPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHcCCHHH-H----hhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCH
Confidence 9999999888764433 3 336777888776543 223557778888999999999875
No 70
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=16 Score=41.62 Aligned_cols=258 Identities=15% Similarity=0.226 Sum_probs=139.9
Q ss_pred CCCchhhhhHHHHHHHHHHHhhh---cchh--hHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCC
Q 001968 542 HPNVHVSRRASYLFMRVVKLLKA---KLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDV 616 (989)
Q Consensus 542 ~~~~~v~~~A~~al~~l~~~~~~---~l~p--~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~ 616 (989)
+.++.++--|++++.+|+..... .+.. -++-++. ++.... .+-+....=|+|.+++-
T Consensus 121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~----Ll~s~~-----------~~v~eQavWALgNIagd--- 182 (514)
T KOG0166|consen 121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ----LLSSPS-----------ADVREQAVWALGNIAGD--- 182 (514)
T ss_pred CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH----HhcCCc-----------HHHHHHHHHHHhccccC---
Confidence 45688999999999999974432 2221 2333322 222111 12244556678877765
Q ss_pred ChhhHHHHH-HHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHH
Q 001968 617 PPEKQSDYL-SSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVL 695 (989)
Q Consensus 617 ~~~~~~~~l-~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (989)
++.-|--.+ ...+.|++..+... + .+.-+..++-+++.++++-.+. | .......+++++
T Consensus 183 s~~~Rd~vl~~g~l~pLl~~l~~~-----------~--~~~~lRn~tW~LsNlcrgk~P~------P-~~~~v~~iLp~L 242 (514)
T KOG0166|consen 183 SPDCRDYVLSCGALDPLLRLLNKS-----------D--KLSMLRNATWTLSNLCRGKNPS------P-PFDVVAPILPAL 242 (514)
T ss_pred ChHHHHHHHhhcchHHHHHHhccc-----------c--chHHHHHHHHHHHHHHcCCCCC------C-cHHHHHHHHHHH
Confidence 233333222 25566666544321 1 1122334567788898876432 2 235667888888
Q ss_pred HHHhhcCCCChhHhHHHHHHHHHHHhhhcccc-----cCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhh--hHHH
Q 001968 696 LQILVVFPKVEPLRCKVTSFIHRMVDTLGASV-----FPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTL--VHDI 768 (989)
Q Consensus 696 ~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~-----~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~--~~~~ 768 (989)
..++. ..+.++..-+|-+++++.....+.+ ...+|.+++ ++.+.+.+-....|..+|-++. |.+ ....
T Consensus 243 ~~ll~--~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~-lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~v 317 (514)
T KOG0166|consen 243 LRLLH--STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD-LLGHSSPKVVTPALRAIGNIVT--GSDEQTQVV 317 (514)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH-HHcCCCcccccHHHhhccceee--ccHHHHHHH
Confidence 88775 5678888888888887764433221 244555655 4444443333344555555554 443 2222
Q ss_pred HHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhc
Q 001968 769 LDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQE-LQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSC 847 (989)
Q Consensus 769 l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd-~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~ 847 (989)
++. ..+.....++.+. +.+ ++++..=.++.|...+...+= .--+..++..++..+
T Consensus 318 i~~---~~L~~l~~ll~~s---------------~~~~ikkEAcW~iSNItAG~~~qiq-aVida~l~p~Li~~l----- 373 (514)
T KOG0166|consen 318 INS---GALPVLSNLLSSS---------------PKESIKKEACWTISNITAGNQEQIQ-AVIDANLIPVLINLL----- 373 (514)
T ss_pred Hhc---ChHHHHHHHhccC---------------cchhHHHHHHHHHHHhhcCCHHHHH-HHHHcccHHHHHHHH-----
Confidence 222 2222333344431 112 677778888888776543321 000123555555544
Q ss_pred CCCChhhhhHHHHHHHHHH
Q 001968 848 NHKDYLVRKACVQIFIRLI 866 (989)
Q Consensus 848 ~~~~~~~~k~a~~~l~~~i 866 (989)
...|..++|.|.-.++++.
T Consensus 374 ~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred hccchHHHHHHHHHHHhhc
Confidence 6678899999988887654
No 71
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.94 E-value=2.4 Score=38.19 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHHHhcccCchhhhh-cccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh------ccCc
Q 001968 454 RNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQY 526 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~~~-~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~------~~~~ 526 (989)
.+|..++.++.++..++...+..... -....++.++..+- ++++.++...+.++++.+..-.. ....
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 92 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK------SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG 92 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh------CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCC
Confidence 45999999999999998875432100 01256666666543 34555632222256666554322 1234
Q ss_pred hHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHH
Q 001968 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 560 (989)
Q Consensus 527 L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~ 560 (989)
++.++. .+.+++..++..|+.+|.++|+
T Consensus 93 l~~l~~------~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 93 VPKLVN------LLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred hHHHHH------HHhcCCHHHHHHHHHHHHHhhC
Confidence 444444 3344567899999999999873
No 72
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.34 E-value=99 Score=37.71 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=61.9
Q ss_pred HhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch--hhHHHHHHHhHhhhhccccCCcccccC
Q 001968 517 MKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--PFIENILQSLQDTIARFTSMNYASKEL 594 (989)
Q Consensus 517 ~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~ 594 (989)
+.-+.+..--+-.++..+=+ -+.++++.+|.+|...|....-.|...+. ..+..+++-.+.-+....
T Consensus 31 a~~vv~~s~tl~dlV~sl~~--yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~rldd~~--------- 99 (1030)
T KOG1967|consen 31 ALSVVEDSTTLLDLVTSLGT--YLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNRLDDSA--------- 99 (1030)
T ss_pred HHHHHcCcccHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhHHHHhh---------
Confidence 33333333334455555544 56678899999999999998888887554 367777776665553221
Q ss_pred CCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHH
Q 001968 595 SGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLT 630 (989)
Q Consensus 595 ~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~ 630 (989)
-....+..+++.++-...+|+...+..++.+++
T Consensus 100 ---la~~~~l~~l~aL~~~~~~p~~~ivsllkalfq 132 (1030)
T KOG1967|consen 100 ---LAKEAVLGGLKALILMSKLPDNFIVSLLKALFQ 132 (1030)
T ss_pred ---hhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 123344555666665544677777777666654
No 73
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.80 E-value=2.2 Score=27.99 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=23.9
Q ss_pred cHHHHHHHHHhcCCChhHHhHHHHHHHHHHh
Q 001968 235 FIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 235 ~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~ 265 (989)
++|.+++.+.+ +++++|.+|+.||.+++.
T Consensus 1 llp~l~~~l~D--~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLND--PSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT---SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC--CCHHHHHHHHHHHHHHHh
Confidence 36777888874 689999999999999875
No 74
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.75 E-value=14 Score=41.05 Aligned_cols=240 Identities=16% Similarity=0.246 Sum_probs=118.3
Q ss_pred chhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHH
Q 001968 545 VHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDY 624 (989)
Q Consensus 545 ~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~ 624 (989)
.+++..+|..+..++++..+.+.||++++++.+-.++..... . ......+..++..+-+... .+.-+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~---~------~~~D~lv~~al~FL~~v~~-~~~~~--- 176 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQ---Q------PKYDILVSKALQFLSSVAE-SPHHK--- 176 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--S---S------GGGHHHHHHHHHHHHHHHT-SHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c------ccccHHHHHHHHHHHHHHc-chhHH---
Confidence 468999999999999999999999999999999888864221 0 1112223334433322211 00000
Q ss_pred HHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHhhhccCCCCCCcCCCcCchHHHHH-HHHHHHHHHhhcC
Q 001968 625 LSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFK-QTLDVLLQILVVF 702 (989)
Q Consensus 625 l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 702 (989)
.++ + +...+.+ +.+++. -.++ +++. . .+.|+ +-.+.+.+-++.
T Consensus 177 --~lf-----------~---------~~~~L~~Iie~VI~--Pnl~--~~e~-------D-~ElfEddP~EYIrrd~e~- 221 (370)
T PF08506_consen 177 --NLF-----------E---------NKPHLQQIIEKVIF--PNLC--LREE-------D-EELFEDDPEEYIRRDLEG- 221 (370)
T ss_dssp --TTT---------------------SHHHHHHHHHHTHH--HHHS----HH-------H-HHHHHHSHHHHHHHHSCS-
T ss_pred --HHh-----------C---------CHHHHHHHHHHhcc--CccC--CCHH-------H-HHHHccCHHHHHHhhccc-
Confidence 000 0 0001111 111111 1110 0000 0 11111 122333333332
Q ss_pred CCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCC------hhHHHHHHHHHHHHHHHhhhh---hH--HHHHH
Q 001968 703 PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE------PKEMAGFLVLLNQLICKFNTL---VH--DILDE 771 (989)
Q Consensus 703 ~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~------~~~~~~~L~l~~~li~~~~~~---~~--~~l~~ 771 (989)
.+...-|.+++.+++.+++..++.+.+.+...++.++..|. -..-...+.+++.+..+-... .. ..+-+
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 23345677899999999999999888888888888887552 123356778888877654221 00 11112
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCC
Q 001968 772 VFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKD 851 (989)
Q Consensus 772 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~ 851 (989)
+-.-+.+.+.+-|+. +...+|=++-+.+.++..+-..- ++ ..+..++..+++.. .+++
T Consensus 302 v~~Ff~~~v~peL~~------------~~~~~piLka~aik~~~~Fr~~l------~~---~~l~~~~~~l~~~L-~~~~ 359 (370)
T PF08506_consen 302 VVDFFSQHVLPELQP------------DVNSHPILKADAIKFLYTFRNQL------PK---EQLLQIFPLLVNHL-QSSS 359 (370)
T ss_dssp HHHHHHHHTCHHHH-------------SS-S-HHHHHHHHHHHHHHGGGS-------H---HHHHHHHHHHHHHT-TSS-
T ss_pred HHHHHHHHhHHHhcc------------cCCCCcchHHHHHHHHHHHHhhC------CH---HHHHHHHHHHHHHh-CCCC
Confidence 222223333333331 11257888888888888664432 21 24555666666554 4444
Q ss_pred hhh
Q 001968 852 YLV 854 (989)
Q Consensus 852 ~~~ 854 (989)
..+
T Consensus 360 ~vv 362 (370)
T PF08506_consen 360 YVV 362 (370)
T ss_dssp HHH
T ss_pred cch
Confidence 443
No 75
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.37 E-value=1.3e+02 Score=36.66 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
+++.++.+..+ ..+.-++++...+...++++..|..-....=+..++++++.|. +++....++..+.++...
T Consensus 506 i~rl~~~~asi--k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh----~sk~s~q~i~tl~tlC~~ 577 (982)
T KOG2022|consen 506 IPRLFETSASI--KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH----NSKESEQAISTLKTLCET 577 (982)
T ss_pred HHHHHHhcccc--ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc----CchHHHHHHHHHHHHHHh
Confidence 45555443332 1223488999999999999999965333333567888888885 566666677767666654
No 76
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=82.29 E-value=1.2e+02 Score=36.14 Aligned_cols=255 Identities=16% Similarity=0.185 Sum_probs=117.5
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcC-----CchhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHH
Q 001968 105 ESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK-----GSMVIDMFCRVLNSLDDELISLDYPRTADELTVAAR 179 (989)
Q Consensus 105 ~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~-----~~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~ 179 (989)
..+.+||.-.|.+++.++....|-.- +-|+.++..+.. ....+-.||+....|.-. .+...
T Consensus 564 De~qkVR~itAlalsalaeaa~Pygi-e~fDsVlkpLwkgir~hrgk~laafLkAigylipl--------md~ey----- 629 (1172)
T KOG0213|consen 564 DEQQKVRTITALALSALAEAATPYGI-EQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPL--------MDAEY----- 629 (1172)
T ss_pred ccchhhhhHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHHccChHHHHHHHHHhhcccc--------ccHHH-----
Confidence 46789999999999999998887543 233444443322 123344455554443211 11110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccc--cccccccccccHHHHHHHHHhc--CCChhHHhH
Q 001968 180 IKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISW--IDINLIANDAFIPLLFELILAD--GLPEQFRGA 255 (989)
Q Consensus 180 l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~w--i~~~~~~~~~~l~~l~~~l~~~--~~~~~~~~~ 255 (989)
.... ...+ +.-+...+.+.+.++.+.+|+.++....- ++...+ ..+.++-+|...+.. ..+-.....
T Consensus 630 -a~yy----Trev---mlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~-r~dilp~ff~~fw~rrmA~drr~ykq 700 (1172)
T KOG0213|consen 630 -ASYY----TREV---MLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYI-RFDILPEFFFSFWGRRMALDRRNYKQ 700 (1172)
T ss_pred -HHHh----HHHH---HHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHH-hhhhhHHHHhhhhhhhhhccccchhh
Confidence 0000 0011 11122334456777888888887765442 222222 134556566555420 000011111
Q ss_pred HHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 001968 256 AVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEV 335 (989)
Q Consensus 256 a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (989)
-++.-++|+.| +..+. . +..++..+ .++.+.|.+..+..+..++..+. ..+..+ .+...+
T Consensus 701 lv~ttv~ia~K-vG~~~---~-----v~R~v~~l-kde~e~yrkm~~etv~ri~~~lg-------~~dide---rleE~l 760 (1172)
T KOG0213|consen 701 LVDTTVEIAAK-VGSDP---I-----VSRVVLDL-KDEPEQYRKMVAETVSRIVGRLG-------AADIDE---RLEERL 760 (1172)
T ss_pred HHHHHHHHHHH-hCchH---H-----HHHHhhhh-ccccHHHHHHHHHHHHHHHhccc-------cccccH---HHHHHH
Confidence 12333344433 11110 0 11222212 23344455444443333332211 111111 233456
Q ss_pred HHHHHHHhhcCcccch--hcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHH
Q 001968 336 LPSVFYVMQNCEVDTT--FSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDR 413 (989)
Q Consensus 336 l~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~ 413 (989)
+.-++..+.+.+.++. +..+......+. ...++++++++..++.++.-++.
T Consensus 761 idgil~Afqeqtt~d~vml~gfg~V~~~lg---------~r~kpylpqi~stiL~rLnnksa------------------ 813 (1172)
T KOG0213|consen 761 IDGILYAFQEQTTEDSVMLLGFGTVVNALG---------GRVKPYLPQICSTILWRLNNKSA------------------ 813 (1172)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHh---------hccccchHHHHHHHHHHhcCCCh------------------
Confidence 6667777776654443 223333332221 22357899999999998875432
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001968 414 MVEYRKDLLVLLRSVGRV 431 (989)
Q Consensus 414 f~~~R~~l~~~l~~i~~i 431 (989)
..|.+..+++..++.+
T Consensus 814 --~vRqqaadlis~la~V 829 (1172)
T KOG0213|consen 814 --KVRQQAADLISSLAKV 829 (1172)
T ss_pred --hHHHHHHHHHHHHHHH
Confidence 2456666676666544
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.07 E-value=99 Score=35.22 Aligned_cols=317 Identities=18% Similarity=0.219 Sum_probs=153.8
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhh-hhc-----ccccHHHHHHHHHhCCCCCCCCchHHHHHHHH
Q 001968 439 FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRT-----GAGHLSELVPMLLQTKLPCHSNRLVALVYLET 512 (989)
Q Consensus 439 ~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~-~~~-----~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~ 512 (989)
.+.+.+.....+. .+-....+.+-.++.+-+...... ... ....++.++........ ...+ ..-.+++.
T Consensus 42 ~ll~kl~~~~~~~--~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~-~~~~--~~~~~L~~ 116 (415)
T PF12460_consen 42 RLLNKLSIVCQSE--SSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASD-QSSD--LDDRVLEL 116 (415)
T ss_pred HHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcc-cccc--cchHHHHH
Confidence 4445555544332 244555555655555554443321 000 11245556665553221 1111 11112223
Q ss_pred HHhhHhhhh------hccCchHHHHHHhhcc---cCCCCCCc---hhhhhHHHHHHHHHHHhhhcc-hhhHHHHHHHhHh
Q 001968 513 VTRYMKFIQ------EHTQYIPVVLAAFLDE---RGIHHPNV---HVSRRASYLFMRVVKLLKAKL-VPFIENILQSLQD 579 (989)
Q Consensus 513 lg~y~~~l~------~~~~~L~~vl~~l~~~---~~l~~~~~---~v~~~A~~al~~l~~~~~~~l-~p~~~~il~~l~~ 579 (989)
+|+...++- .|.+.+..+...++.. ..+..... ....+....+..+....++.. .|...++++.+..
T Consensus 117 ~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~ 196 (415)
T PF12460_consen 117 LSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLN 196 (415)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHH
Confidence 454444443 2445666777666510 11111111 235566666777777777655 4777778887776
Q ss_pred hhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHH-------------HH---HHHhh
Q 001968 580 TIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQV-------------QT---MLLDA 643 (989)
Q Consensus 580 ~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l-------------~~---~~~~~ 643 (989)
....... ...+....+.++.++...+ +.+ .++.++......+ +- +.+..
T Consensus 197 ~~~~~~~----------~~~~~~~~~~la~LvNK~~-~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 197 LALSSED----------EFSRLAALQLLASLVNKWP-DDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred HHHcCCC----------hHHHHHHHHHHHHHHcCCC-Chh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 6643221 2346667788888887732 222 2333333333222 00 01111
Q ss_pred hhcCCchhhhHHHHHHHHH---HHHhhhccCCCCC-----Cc--CCCcCch-----HHHHHHHHHHHHHHhhcCCCChhH
Q 001968 644 KMLNPEESTAKFANIQQII---MAINALSKGFNER-----LV--TSSRPAI-----GLMFKQTLDVLLQILVVFPKVEPL 708 (989)
Q Consensus 644 ~~~~~~~~~~~~~~i~~~l---~~i~~i~k~~~~~-----~~--~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~i 708 (989)
...+++........+...+ ..-..++++|+-- .+ ..++..+ +.+|..++|.+.+..+. .+.+.
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~--~~~~~ 339 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE--ADDEI 339 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh--cChhh
Confidence 1111111111111122211 1112234555421 00 0111111 24677777777655543 23347
Q ss_pred hHHHHHHHHHHHhhhcccc-cCchHHHHHHHHccCChhH---HHHHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 001968 709 RCKVTSFIHRMVDTLGASV-FPYLPKALEQLLAESEPKE---MAGFLVLLNQLICKFNTLVHDILDEVFPAIA 777 (989)
Q Consensus 709 ~e~~~~~~~~~~~~l~~~~-~p~l~~l~~~ll~~~~~~~---~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~ 777 (989)
+..-..++..++......+ .|.++.+++.+++..+.++ ....|.++..++..-.+-+.+.+..+++.++
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 7777788888888887776 7999999999988775432 2455666666666554445666665555544
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.99 E-value=1e+02 Score=35.36 Aligned_cols=216 Identities=14% Similarity=0.167 Sum_probs=120.3
Q ss_pred ccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCc--hHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHH
Q 001968 483 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQY--IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 560 (989)
Q Consensus 483 ~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~--L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~ 560 (989)
.+++.++..|+ ...+++++.|+.+.=.+++.+-.=++..|.. .+.+++.+.. -++.+++.++..|-.-+..|++
T Consensus 204 ~yl~~~ldGLf--~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~--~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 204 SYLPSLLDGLF--NMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVP--HLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred hcchHHHHHHH--HHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccc--cccCCcHHHHHHHHHHHHHHhc
Confidence 35566665555 3345778888544323566666666666765 4667777776 7777899999999999999999
Q ss_pred HhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHH
Q 001968 561 LLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTML 640 (989)
Q Consensus 561 ~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~ 640 (989)
--++.+.||+..++..+.+++...+++ . . .+-...+-+.+..+.+... ..++ ++ +.+++.-+...+
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~-~-i-----~~~a~~~n~~l~~l~s~~~-~~~~----id--~~~ii~vl~~~l 345 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEM-S-I-----KEYAQMVNGLLLKLVSSER-LKEE----ID--YGSIIEVLTKYL 345 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccc-c-H-----HHHHHHHHHHHHHHHhhhh-hccc----cc--hHHHHHHHHHHh
Confidence 999999999999999999888654320 0 0 0111112222233333321 1111 11 234555554544
Q ss_pred HhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHH
Q 001968 641 LDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 720 (989)
Q Consensus 641 ~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~ 720 (989)
... .++. . ...+.|+..+-..++.. +.-...++.+.++..++ .+++++...+...+..++
T Consensus 346 ~~~-----~~~t-r----i~~L~Wi~~l~~~~p~q--------l~~h~~~if~tLL~tLs--d~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 346 SDD-----REET-R----IAVLNWIILLYHKAPGQ--------LLVHNDSIFLTLLKTLS--DRSDEVVLLALSLLASIC 405 (675)
T ss_pred hcc-----hHHH-H----HHHHHHHHHHHhhCcch--------hhhhccHHHHHHHHhhc--CchhHHHHHHHHHHHHHh
Confidence 321 1111 1 23467777776555432 11112233333443343 445677777777777776
Q ss_pred hhhcc-cccCchHHHHH
Q 001968 721 DTLGA-SVFPYLPKALE 736 (989)
Q Consensus 721 ~~l~~-~~~p~l~~l~~ 736 (989)
..-.. ...+|+-.+++
T Consensus 406 ~s~~~~~~~~fl~sLL~ 422 (675)
T KOG0212|consen 406 SSSNSPNLRKFLLSLLE 422 (675)
T ss_pred cCcccccHHHHHHHHHH
Confidence 65443 22344444444
No 79
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.83 E-value=17 Score=32.25 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=52.9
Q ss_pred hHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHH-HHHHHHHHHHHHhhhh-hHHHHHHhHHHHH
Q 001968 707 PLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMA-GFLVLLNQLICKFNTL-VHDILDEVFPAIA 777 (989)
Q Consensus 707 ~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~-~~L~l~~~li~~~~~~-~~~~l~~~~~~l~ 777 (989)
.-+.++.+.+..+++..|+.+.++.|+++..|....+.+++. ..+.++..+++....+ ..+.+++++..++
T Consensus 30 ~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 30 PEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 445568888889999778888999999999888777666554 4578888899888775 5666666555443
No 80
>PRK09687 putative lyase; Provisional
Probab=81.60 E-value=78 Score=33.73 Aligned_cols=179 Identities=10% Similarity=0.033 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHHHHHhcCC----chHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 001968 18 IDSMLKSQAVNFCQQIKETP----SICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~----~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~ 93 (989)
.|+..|..|-..|-+++..+ .+......++.+++++.||..|+..|-+.=... ..-.+. +.+.+...+.
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~~~~----a~~~l~~~~~-- 138 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLYSPK----IVEQSQITAF-- 138 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-cccchH----HHHHHHHHhh--
Confidence 48999999999999998643 466767666666777899999999987642111 000111 1222222222
Q ss_pred hhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChh
Q 001968 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTAD 172 (989)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~ 172 (989)
.....||...+.+++.+ + =+..++.|+..+...+ .+.......|..+.
T Consensus 139 -----------D~~~~VR~~a~~aLg~~-----~--~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~------------- 187 (280)
T PRK09687 139 -----------DKSTNVRFAVAFALSVI-----N--DEAAIPLLINLLKDPNGDVRNWAAFALNSNK------------- 187 (280)
T ss_pred -----------CCCHHHHHHHHHHHhcc-----C--CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------------
Confidence 23667998888888654 1 2567888888877543 22322333332210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhH
Q 001968 173 ELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQF 252 (989)
Q Consensus 173 ~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~ 252 (989)
. +.+.+...+...|. ..+..+...+...|+. +.+...++.+.+.+. ++.+
T Consensus 188 -------------~-~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~---------~~~~~av~~Li~~L~----~~~~ 237 (280)
T PRK09687 188 -------------Y-DNPDIREAFVAMLQ---DKNEEIRIEAIIGLAL---------RKDKRVLSVLIKELK----KGTV 237 (280)
T ss_pred -------------C-CCHHHHHHHHHHhc---CCChHHHHHHHHHHHc---------cCChhHHHHHHHHHc----CCch
Confidence 0 12333443445554 5677888888888875 234678888888885 4557
Q ss_pred HhHHHHHHHHHH
Q 001968 253 RGAAVGCVLAVV 264 (989)
Q Consensus 253 ~~~a~~~l~~i~ 264 (989)
+..|+++|.++-
T Consensus 238 ~~~a~~ALg~ig 249 (280)
T PRK09687 238 GDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHHHhcC
Confidence 888888877663
No 81
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.70 E-value=23 Score=39.38 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhhccccccccccccc--cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 207 DFEVCTGVLDCMRRYISWIDINLIAN--DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 207 ~~~l~~~~L~~l~~~i~wi~~~~~~~--~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
+.....++++++...++-++.+.+.+ +++.|.+++... ..+..+|.+|+=||+.++.+
T Consensus 419 D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~--S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 419 DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYD--STSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhc--CchHHhhhhHHHhHHHHHHH
Confidence 44556688899988888777665543 678888888775 36789999999999999876
No 82
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=80.00 E-value=1e+02 Score=36.19 Aligned_cols=201 Identities=11% Similarity=0.203 Sum_probs=105.5
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc-hhhHHHHHHHh-Hhh-hhccccCCc
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL-VPFIENILQSL-QDT-IARFTSMNY 589 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l-~p~~~~il~~l-~~~-l~~~~~~~~ 589 (989)
+.+...|+..+|..+..++..++. .-......+|-.|.-.+.++|....+.+ .|-+.+..-.+ .+. ......
T Consensus 266 l~~l~~~~~~f~k~lk~liK~~V~--vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~t--- 340 (661)
T KOG2256|consen 266 LTVLVPFLATFPKLLKKLIKAVVH--VWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNT--- 340 (661)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhe--eeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcc---
Confidence 556677778888888888888773 2223355788888888888998766543 33222222111 111 110111
Q ss_pred ccccCCCCcchh-HHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHH--H-HHHHHHHH
Q 001968 590 ASKELSGSEDGS-HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFA--N-IQQIIMAI 665 (989)
Q Consensus 590 ~~~~~~~~~~~~-~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~--~-i~~~l~~i 665 (989)
-... .+--++.-+.+. +++..+++.-..+..+...+.+.+... ..++...+- + ++++=.|+
T Consensus 341 --------l~~i~Fl~~slvEL~~l---d~~~~Yq~aF~yIrQLAihLRnam~~k----~K~s~~~VYnWqfi~cL~lW~ 405 (661)
T KOG2256|consen 341 --------LPLINFLQNSLVELLGL---DLQVSYQHAFVYIRQLAIHLRNAMITK----NKESVQSVYNWQYVHCLDLWL 405 (661)
T ss_pred --------cchhHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHHHH
Confidence 1122 222333334333 444444333333333333444443322 122222221 1 33343555
Q ss_pred hhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcC--CCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHc
Q 001968 666 NALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF--PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLA 740 (989)
Q Consensus 666 ~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~ 740 (989)
..|+..-+. .+++.++.-.+.+++..+++.. ++.-++|=++++.+.++.+..|- +.|..|.+++.+-.
T Consensus 406 rvisf~~~~------~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 406 RVISFANGS------ASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKS 475 (661)
T ss_pred HHHHHhhcc------HhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHH
Confidence 556532221 2344555555556665555443 45678999999999999988875 57888887775543
No 83
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=79.21 E-value=34 Score=33.57 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=49.2
Q ss_pred CCCCchHHHHHHHHHHhhH--hhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH-hhhcchhhHHHHHH
Q 001968 499 CHSNRLVALVYLETVTRYM--KFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-LKAKLVPFIENILQ 575 (989)
Q Consensus 499 ~~~~~~v~~~~~~~lg~y~--~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~-~~~~l~p~~~~il~ 575 (989)
.+++|.|+-+.+-++.+.. ++++..+..+..++. .+.++++.|+..|...|..+.+. .+..+...+++++.
T Consensus 35 ~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~------~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 35 RDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK------LLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH------HHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 3677888544322343321 233334444455544 45568999999999999999988 66667778888877
Q ss_pred HhHhh
Q 001968 576 SLQDT 580 (989)
Q Consensus 576 ~l~~~ 580 (989)
.+...
T Consensus 109 ~l~~~ 113 (178)
T PF12717_consen 109 SLNNC 113 (178)
T ss_pred HHhCc
Confidence 66544
No 84
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=77.86 E-value=56 Score=35.62 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=87.4
Q ss_pred CChhHhHH-HHHHHHHHHhhhcccccCchHHHHHHHHc--------cCC-hhHHH-HHHHHHHHHHHHhhhhhHHHHHHh
Q 001968 704 KVEPLRCK-VTSFIHRMVDTLGASVFPYLPKALEQLLA--------ESE-PKEMA-GFLVLLNQLICKFNTLVHDILDEV 772 (989)
Q Consensus 704 ~~~~i~e~-~~~~~~~~~~~l~~~~~p~l~~l~~~ll~--------~~~-~~~~~-~~L~l~~~li~~~~~~~~~~l~~~ 772 (989)
+.+..|+. +..++..++..+|+.+.|.+|.+++.+.. +++ -+++. .|..++..++..+-..+...=...
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~ 162 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQ 162 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHH
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHH
Confidence 44566763 88889999999999999999999887664 232 24443 566788888876544332222233
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccCCCCcCChHHHHHHHHHhhcCCC
Q 001968 773 FPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLS--SVFLSPKSRGYLDPIMQLLLYTSCNHK 850 (989)
Q Consensus 773 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~--~~~~s~~~~~~~~~il~~l~~~~~~~~ 850 (989)
|..+++.+.-.++. ..+|+.+.-++.+..++.+... .=+...--+.++-.+++.++..+.+..
T Consensus 163 f~~~idsi~wg~kh---------------~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 163 FKLVIDSIVWGFKH---------------TNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHHTS---------------SSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 44455444433332 2355666666666666654322 000000003345556666666665766
Q ss_pred ChhhhhHHHHHHHHHHHHh
Q 001968 851 DYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 851 ~~~~~k~a~~~l~~~i~~~ 869 (989)
|....+.-...+..++...
T Consensus 228 Hk~gf~~q~~iL~~Lf~~v 246 (319)
T PF08767_consen 228 HKSGFKLQSQILSNLFRLV 246 (319)
T ss_dssp -GGGHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 7777777778888877654
No 85
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=77.24 E-value=21 Score=40.46 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhC
Q 001968 416 EYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (989)
Q Consensus 416 ~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~ 495 (989)
+|.+.+.|.+.++....|+. .+-+...||..+.. .+.-+-++..++.+|+..|.. +.+..++..+.+.+.
T Consensus 428 eFK~~~Vdaisd~~~~~p~s-kEraLe~LC~fIED-----cey~~I~vrIL~iLG~EgP~a--~~P~~yvrhIyNR~i-- 497 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDS-KERALEVLCTFIED-----CEYHQITVRILGILGREGPRA--KTPGKYVRHIYNRLI-- 497 (898)
T ss_pred hHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHhh-----cchhHHHHHHHHHhcccCCCC--CCcchHHHHHHHHHH--
Confidence 45555666666665555542 23344556666543 333455677778888776643 112234445555443
Q ss_pred CCCCCCCchHHHHHHHHHHhhHhh-hhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHH--HHhhh
Q 001968 496 KLPCHSNRLVALVYLETVTRYMKF-IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVV--KLLKA 564 (989)
Q Consensus 496 ~~~~~~~~~v~~~~~~~lg~y~~~-l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~--~~~~~ 564 (989)
-.+..|+... +...++| +......++.-+..++. |++.+.+..||.+|+.++..+- ++|-+
T Consensus 498 ----LEN~ivRsaA---v~aLskf~ln~~d~~~~~sv~~~lk-RclnD~DdeVRdrAsf~l~~~~~~da~~p 561 (898)
T COG5240 498 ----LENNIVRSAA---VQALSKFALNISDVVSPQSVENALK-RCLNDQDDEVRDRASFLLRNMRLSDACEP 561 (898)
T ss_pred ----HhhhHHHHHH---HHHHHHhccCccccccHHHHHHHHH-HHhhcccHHHHHHHHHHHHhhhhhhhhhc
Confidence 1222333222 3444444 23334455555555554 6888888899999999986543 34444
No 86
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.67 E-value=1.3e+02 Score=37.88 Aligned_cols=239 Identities=21% Similarity=0.203 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh--------ccCchHH
Q 001968 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--------HTQYIPV 529 (989)
Q Consensus 458 ~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~--------~~~~L~~ 529 (989)
..=+||.++..++..+..+ ..+..++++++ -+..++..-|++..++++.+.-.-.+. .|+||-+
T Consensus 439 tK~~ALeLl~~lS~~i~de------~~LDRVlPY~v--~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDE------VKLDRVLPYFV--HLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred hHHHHHHHHHHHhhhcchH------HHHhhhHHHHH--HHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 3345677888888887754 34556666665 234567777877776666655544432 3677777
Q ss_pred HHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHH
Q 001968 530 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGL 609 (989)
Q Consensus 530 vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~ 609 (989)
-|+.|.. .+....||-.-+..+..|++..-. +-.+-+.+...- .... ++++
T Consensus 511 ~L~~l~~----d~~~~~vRiayAsnla~LA~tA~r-----Fle~~q~~~~~g-~~n~----------~nse--------- 561 (1431)
T KOG1240|consen 511 HLNHLLN----DSSAQIVRIAYASNLAQLAKTAYR-----FLELTQELRQAG-MLND----------PNSE--------- 561 (1431)
T ss_pred hhHhhhc----cCccceehhhHHhhHHHHHHHHHH-----HHHHHHHHHhcc-cccC----------cccc---------
Confidence 7776653 112334555555556666554322 111112221110 0000 1111
Q ss_pred HHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHH
Q 001968 610 LIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFK 689 (989)
Q Consensus 610 li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~ 689 (989)
. .+.......++.|..-+-+....++. +++ ..+.+ .++..|..++.-|+....+ .+
T Consensus 562 ---t--~~~~~~~~~~~~L~~~V~~~v~sLls------d~~--~~Vkr--~Lle~i~~LC~FFGk~ksN-------D~-- 617 (1431)
T KOG1240|consen 562 ---T--APEQNYNTELQALHHTVEQMVSSLLS------DSP--PIVKR--ALLESIIPLCVFFGKEKSN-------DV-- 617 (1431)
T ss_pred ---c--ccccccchHHHHHHHHHHHHHHHHHc------CCc--hHHHH--HHHHHHHHHHHHhhhcccc-------cc--
Confidence 0 11222223333333322222223322 111 11221 2344466666666643100 01
Q ss_pred HHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhccc-ccCchHHHHHHHHccCChhHHHHHHHHHHHHHHH
Q 001968 690 QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-VFPYLPKALEQLLAESEPKEMAGFLVLLNQLICK 760 (989)
Q Consensus 690 ~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~-~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~ 760 (989)
++..+...+. .++..+|.+...-+.-+.-.+|.. +..|+-+++.+-+++-+..-+...|+.++.+++.
T Consensus 618 -iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 618 -ILSHLITFLN--DKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred -hHHHHHHHhc--CccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh
Confidence 1222222222 346677876555555555778877 5677777777666666666677888888888763
No 87
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=75.95 E-value=58 Score=31.32 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhh--cCC-CChhhHHHHHHhhcCCc
Q 001968 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFE--YPL-IWSSVFVDFLPQLNKGS 145 (989)
Q Consensus 81 ~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~--~p~-~Wp~~~~~l~~~~~~~~ 145 (989)
.||.-|++.+... +.+...-+.|+.+++.++..- +++ .|+++-+-+++...+.+
T Consensus 3 eikplLIsCL~~q-----------~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~ 59 (174)
T PF04510_consen 3 EIKPLLISCLTMQ-----------ETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEP 59 (174)
T ss_pred chHHHHHHHHHhh-----------cccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccch
Confidence 4677778877765 233445566666666665433 344 89999988888775544
No 88
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.84 E-value=1.2e+02 Score=31.84 Aligned_cols=212 Identities=14% Similarity=0.147 Sum_probs=100.1
Q ss_pred chHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHH
Q 001968 526 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE 605 (989)
Q Consensus 526 ~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~e 605 (989)
-+..+++++.+ .+.+ .+.+ ..|..++..+. .++..-......+++.+.+...... . ...+|..+|+
T Consensus 39 ev~~L~~F~~~--rl~D-~~~~-~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~~~q~----~-----~q~~R~~~~~ 104 (262)
T PF14500_consen 39 EVQVLLDFFCS--RLDD-HACV-QPALKGLLALV-KMKNFSPESAVKILRSLFQNVDVQS----L-----PQSTRYAVYQ 104 (262)
T ss_pred HHHHHHHHHHH--Hhcc-HhhH-HHHHHHHHHHH-hCcCCChhhHHHHHHHHHHhCChhh----h-----hHHHHHHHHH
Confidence 35666676666 5543 2333 33366666666 3333222345555555544332211 1 1246788888
Q ss_pred HHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchH
Q 001968 606 AIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIG 685 (989)
Q Consensus 606 ai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~ 685 (989)
-+-.++.... ..+..+-..++..+-+.++ .|.|++.+..+..++ ..+.+.|... +..
T Consensus 105 ll~~l~~~~~-------~~l~~~~~~fv~~~i~~~~------gEkDPRnLl~~F~l~---~~i~~~~~~~-------~~~ 161 (262)
T PF14500_consen 105 LLDSLLENHR-------EALQSMGDDFVYGFIQLID------GEKDPRNLLLSFKLL---KVILQEFDIS-------EFA 161 (262)
T ss_pred HHHHHHHHhH-------HHHHhchhHHHHHHHHHhc------cCCCHHHHHHHHHHH---HHHHHhcccc-------hhH
Confidence 8888776521 2223333344444444443 244667654443443 3444444321 112
Q ss_pred HHHHHHHHHHHHHh-hcCCCCh--hHhHHHHHHHHHHHhhhcccccCc-hHHHHHHHHccCChhHHHHHHHHHHHHHHHh
Q 001968 686 LMFKQTLDVLLQIL-VVFPKVE--PLRCKVTSFIHRMVDTLGASVFPY-LPKALEQLLAESEPKEMAGFLVLLNQLICKF 761 (989)
Q Consensus 686 ~~~~~~~~~~~~~l-~~~~~~~--~i~e~~~~~~~~~~~~l~~~~~p~-l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~ 761 (989)
+-+-++...+..+- ..-++++ .-++.....++..+.+- +.+.|+ +|-+++.|-+.... --.+.|.++..++.+|
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~fa~~~~p~LleKL~s~~~~-~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PLFAPFAFPLLLEKLDSTSPS-VKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-HhhHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHC
Confidence 11122222222221 1122332 12334444444333322 223333 35555555444332 2367889999999999
Q ss_pred hhh-hHHHHHHhHHHH
Q 001968 762 NTL-VHDILDEVFPAI 776 (989)
Q Consensus 762 ~~~-~~~~l~~~~~~l 776 (989)
|.+ +.++...+...+
T Consensus 240 ~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 240 GADSLSPHWSTIWNAL 255 (262)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 987 566655555444
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=73.56 E-value=16 Score=30.70 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHH
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEV 66 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~ 66 (989)
+..+..+-+. .++..|..|-..|.++. ++++-.....++ ++.++.||..|+..|...
T Consensus 2 ~~L~~~l~~~---~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQND---PDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTS---SSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 3445555232 48999999999999774 456778888888 457789999999998843
No 90
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=73.54 E-value=1.9e+02 Score=33.88 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=34.7
Q ss_pred HhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc
Q 001968 517 MKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 566 (989)
Q Consensus 517 ~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l 566 (989)
++|++.-|++-..+++.+++ ...+.+..||..|...|-.||++.+..+
T Consensus 47 ~kffk~FP~l~~~Ai~a~~D--LcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 47 PKFFKHFPDLQEEAINAQLD--LCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHCC-GGGHHHHHHHHHH--HHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHhhChhhHHHHHHHHHH--HHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 45556668899999999998 7778889999999999999999865544
No 91
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.87 E-value=8.1 Score=38.04 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~ 561 (989)
+..+++...++|..+.+.++.++. .+.++++.||..|...+.++...
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~--~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYK--CLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHc
Confidence 555667777788888888888887 99999999999999999887654
No 92
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=70.83 E-value=1.2e+02 Score=35.06 Aligned_cols=173 Identities=9% Similarity=0.048 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhhhh
Q 001968 687 MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES-EPKEMAGFLVLLNQLICKFNTLV 765 (989)
Q Consensus 687 ~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~-~~~~~~~~L~l~~~li~~~~~~~ 765 (989)
-..++|.....++.. ....+.|.++..++..++..-+......=-.+...+ ... ...+.+..|..+..+.+ -|+++
T Consensus 25 ~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I-~~~~~~~d~~~~l~aL~~LT~-~Grdi 101 (464)
T PF11864_consen 25 SIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI-SDPSNDDDFDLRLEALIALTD-NGRDI 101 (464)
T ss_pred HHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHc-CCcCc
Confidence 356678887777754 344678888888888877655432111001111112 222 23445666677766665 46665
Q ss_pred HHHHHHhHHHHHHHHHhhcCC---C---C--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHH
Q 001968 766 HDILDEVFPAIAGRIFNIIPR---D---A--FPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDP 837 (989)
Q Consensus 766 ~~~l~~~~~~l~~~~~~~l~~---~---~--~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~ 837 (989)
..+-.++.+.+....-..++. . . ....+..+..........-..+|.|+..+++.+...+ + ...+..
T Consensus 102 ~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l--~---e~~i~~ 176 (464)
T PF11864_consen 102 DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYL--D---EDEISS 176 (464)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCC--C---HHHHHH
Confidence 444444444444444333310 0 0 0000111100001123345678999999999885432 2 225666
Q ss_pred HHHHHHHhhcCCCChhhhhHHHHHHHHHHH
Q 001968 838 IMQLLLYTSCNHKDYLVRKACVQIFIRLIK 867 (989)
Q Consensus 838 il~~l~~~~~~~~~~~~~k~a~~~l~~~i~ 867 (989)
++..++..+.....+...+.|++++.-++.
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~ 206 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIIT 206 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 777666554455556666889998887776
No 93
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=70.67 E-value=1.2e+02 Score=36.96 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccc-cCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcc
Q 001968 802 EVQELQRTLYTFLHVIATHDLSSVF-LSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVP 880 (989)
Q Consensus 802 ~~pd~~~~~~~ll~~~~~~~~~~~~-~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~ 880 (989)
..|+.|-..+.|+..+++..++.+. +.. -++|..++.++. ...+..+.-.|+.++.-++-.... ...
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~--t~Lf~~LLk~L~----~D~~~~~~~~al~~LimlLP~ip~------~l~ 147 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKILQ--TPLFKSLLKCLQ----FDTSITVVSSALLVLIMLLPHIPS------SLG 147 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHHhc--ChhHHHHHHHHh----hcccHHHHHHHHHHHHHHhccccc------hhh
Confidence 3467788899999999999988886 322 457888888773 446777777888888888866543 223
Q ss_pred hHHHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 001968 881 GFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGF 942 (989)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~~~~~~~~~l~~~~~~~~ 942 (989)
.+-.-+...|+.+++|..--... ..|....-+-..+-.+.-.+|-.|.-+|+.++...+.
T Consensus 148 ~~L~~Lf~If~Rl~~W~~~~~~~--~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr~~y~ 207 (668)
T PF04388_consen 148 PHLPDLFNIFGRLLSWERKNPGS--VPEVYLIHLQASVYALFTRLYGLYPCNFLSFLRQHYS 207 (668)
T ss_pred HHHHHHHHHHHHHHHcccCCCCC--ccccccccchhhHHHHHHHHHhcccchHHHHHHHHHh
Confidence 33344455555555555411111 1111110000011112223566666788877764443
No 94
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=70.11 E-value=96 Score=29.01 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHH-
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEE- 78 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~- 78 (989)
.+.+.|..+-++. .....-....+.++.+..++.+-..+...|.. +.++.++..|+.+|+..+++.-..+-.+-
T Consensus 5 ~~~~li~kATs~~--~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~ 82 (140)
T PF00790_consen 5 SITELIEKATSES--LPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA 82 (140)
T ss_dssp HHHHHHHHHT-TT--SSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred hHHHHHHHHhCcC--CCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 3677788887764 23335667778899999988877777776653 46799999999999999987533222110
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcccCCCChHH--HHHHHHHHHHHHHHhhc
Q 001968 79 RNLIRESVFSMVCCELVDGKSSMRVLESPAF--IRNKLAQVLVTLIYFEY 126 (989)
Q Consensus 79 ~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~--v~~kl~~~la~l~~~~~ 126 (989)
...+-+.|...+... ..... |++|+-.++..-. ..|
T Consensus 83 ~~~fl~~l~~l~~~~-----------~~~~~~~Vk~k~l~ll~~W~-~~f 120 (140)
T PF00790_consen 83 SKEFLDELVKLIKSK-----------KTDPETPVKEKILELLQEWA-EAF 120 (140)
T ss_dssp SHHHHHHHHHHHHHT-----------TTHHHSHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHccC-----------CCCchhHHHHHHHHHHHHHH-HHH
Confidence 112333344444432 12333 9999988887763 344
No 95
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.54 E-value=51 Score=32.41 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhccccccccccccc---cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 195 AWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN---DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 195 ~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~---~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
.+...|+. +.+..+...+|||+...++-.|++-+.. ++++..+...+.. .+++++.+++.|+..+++-
T Consensus 105 ~Ll~~L~~--E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~--~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 105 GLLLALQA--EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH--RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHhc--ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcC
Confidence 33344543 4566788899999999999877765532 2344444444442 5789999999999888764
No 96
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=68.35 E-value=1.6e+02 Score=33.46 Aligned_cols=211 Identities=13% Similarity=0.172 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHHhc-CCchHHHHH----HHh----ccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 001968 18 IDSMLKSQAVNFCQQIKE-TPSICRICI----EKL----SLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFS 88 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~----~lL----~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~ 88 (989)
.|+.+|......|..+-. -++--.... .++ ..+.....--=.+.++...|+.-=..+.++.+..+++.|+-
T Consensus 145 ~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllP 224 (409)
T PF01603_consen 145 PDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLP 224 (409)
T ss_dssp STHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 499999999999988443 333111111 111 11111111112233334444432235777777777777665
Q ss_pred HHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccC
Q 001968 89 MVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDY 167 (989)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~ 167 (989)
..... .-...-..++.++..++..+ |.-=..++..++..+-.+. .--.++|..+..+-|-+.
T Consensus 225 Lh~~~------------~~~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~---- 287 (409)
T PF01603_consen 225 LHKSP------------HLSSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP---- 287 (409)
T ss_dssp GGGST------------GGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT------
T ss_pred HhcCC------------cHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC----
Confidence 54421 23344567777777775543 3433445555555554433 223345555444433220
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcc--ccccccccccccccHHHHHHHHHh
Q 001968 168 PRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRY--ISWIDINLIANDAFIPLLFELILA 245 (989)
Q Consensus 168 ~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~--i~wi~~~~~~~~~~l~~l~~~l~~ 245 (989)
.. .+.. ....++..+..+++ +.+..+++.||..+.+= ++++.- ....+++.++..+..
T Consensus 288 ---~~----------~f~~-i~~~lf~~la~ci~---S~h~qVAErAl~~w~n~~~~~li~~---~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 288 ---PE----------EFQK-IMVPLFKRLAKCIS---SPHFQVAERALYFWNNEYFLSLISQ---NSRVILPIIFPALYR 347 (409)
T ss_dssp ---HH----------HHHH-HHHHHHHHHHHHHT---SSSHHHHHHHHGGGGSHHHHHHHHC---THHHHHHHHHHHHSS
T ss_pred ---HH----------HHHH-HHHHHHHHHHHHhC---CCCHHHHHHHHHHHCCHHHHHHHHh---ChHHHHHHHHHHHHH
Confidence 00 1112 14455544445544 56778888888776542 222211 113466777776643
Q ss_pred ---cCCChhHHhHHHHHHHHHHh
Q 001968 246 ---DGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 246 ---~~~~~~~~~~a~~~l~~i~~ 265 (989)
...+..++..|..++..+..
T Consensus 348 ~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 348 NSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp TTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 23567777777777765543
No 97
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.86 E-value=99 Score=29.91 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhh-hcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhh
Q 001968 438 VFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM-RTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRY 516 (989)
Q Consensus 438 ~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~-~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y 516 (989)
......+...+++ .++..+-+++.++.++.+.++.+-+ .....-+..+++.|- . ..+ +.+.-..+.++.+.
T Consensus 24 ~~l~~ri~~LL~s---~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~-~---~~~-~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 24 HKLVTRINSLLQS---KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILE-K---PDP-PSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHhCC---CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc-C---CCC-HHHHHHHHHHHHHH
Confidence 3334445555544 5566666788888888888755433 222233444444332 1 122 22211222234444
Q ss_pred Hhhhhhc--------cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhh
Q 001968 517 MKFIQEH--------TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDT 580 (989)
Q Consensus 517 ~~~l~~~--------~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~ 580 (989)
..+.... ...++.+++.++. .+. + +.+...+..+|..+.+..+..+.||...+=..+.+.
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~--l~~-~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQ--LLQ-D-SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHH--HHh-c-cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 4443332 3457777777774 333 2 457788888888888888888888877775555443
No 98
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.65 E-value=2.1e+02 Score=34.83 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=108.1
Q ss_pred HHhhHhhhhhc--c--CchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCC
Q 001968 513 VTRYMKFIQEH--T--QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMN 588 (989)
Q Consensus 513 lg~y~~~l~~~--~--~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~ 588 (989)
+....+|++.+ . .....|+..+++ .+.+.++-|--.|...+..+|+-..+.+.|.+.+....- ...
T Consensus 748 L~~l~~l~e~r~~~~~~~~ekvl~i~ld--~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~------k~k-- 817 (982)
T KOG4653|consen 748 LQMLRHLIEKRKKATLIQGEKVLAIALD--TLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSE------KKK-- 817 (982)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHH--HhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhc------ccC--
Confidence 55667888732 1 356788888887 788888889999999999999987777766544332221 111
Q ss_pred cccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhh
Q 001968 589 YASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINAL 668 (989)
Q Consensus 589 ~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i 668 (989)
...+.++.+=|+++.++.+.+ +-...|.. ++++-+...+. ++ +-+..+ ..+..+|.+
T Consensus 818 ------~~~d~~lkVGEai~k~~qa~G---el~~~y~~----~Li~tfl~gvr------ep-d~~~Ra---SS~a~lg~L 874 (982)
T KOG4653|consen 818 ------LQTDYRLKVGEAILKVAQALG---ELVFKYKA----VLINTFLSGVR------EP-DHEFRA---SSLANLGQL 874 (982)
T ss_pred ------CCccceehHHHHHHHHHHHhc---cHHHHHHH----HHHHHHHHhcC------Cc-hHHHHH---hHHHHHHHH
Confidence 013678889999999998855 44444544 44433333222 11 111111 112223333
Q ss_pred ccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHH
Q 001968 669 SKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKA 734 (989)
Q Consensus 669 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l 734 (989)
+..... .....|-++...+..+.+ -.+...+|.++...++.+....|.+.+|++...
T Consensus 875 cq~~a~--------~vsd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 875 CQLLAF--------QVSDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HHHHhh--------hhhHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 222111 112345555555555444 266678899999999999999999888865443
No 99
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.72 E-value=2.9e+02 Score=33.32 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=45.2
Q ss_pred hHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCC
Q 001968 376 RLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRN 455 (989)
Q Consensus 376 ~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~ 455 (989)
.+.+.+++-..++++.-++. .-.|+..+..+-.+++++|+..- .+...+...++. ..
T Consensus 137 vp~IaPI~llAIk~~~~D~s-------------------~yVRk~AA~AIpKLYsLd~e~k~-qL~e~I~~LLaD---~s 193 (968)
T KOG1060|consen 137 VPMIAPIMLLAIKKAVTDPS-------------------PYVRKTAAHAIPKLYSLDPEQKD-QLEEVIKKLLAD---RS 193 (968)
T ss_pred hhhHHHHHHHHHHHHhcCCc-------------------HHHHHHHHHhhHHHhcCChhhHH-HHHHHHHHHhcC---CC
Confidence 45566666666666543211 13588888888899999876543 444555555543 33
Q ss_pred hhHHHHHHHHHHHhcccCchh
Q 001968 456 VEEVEAALTLLYALGESMSEE 476 (989)
Q Consensus 456 w~~~Ea~l~~l~~i~e~~~~~ 476 (989)
.-.+-+|+ .++-|.|++.
T Consensus 194 plVvgsAv---~AF~evCPer 211 (968)
T KOG1060|consen 194 PLVVGSAV---MAFEEVCPER 211 (968)
T ss_pred CcchhHHH---HHHHHhchhH
Confidence 44455555 5677778764
No 100
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=65.70 E-value=91 Score=33.27 Aligned_cols=75 Identities=7% Similarity=0.101 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccccccccc---ccccccHHHHHHHHHh----------cCCChhHHhH
Q 001968 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINL---IANDAFIPLLFELILA----------DGLPEQFRGA 255 (989)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~---~~~~~~l~~l~~~l~~----------~~~~~~~~~~ 255 (989)
.+.++..+..++.. .+++.....++|+.+++.=++... +...++.+++.+.+.. ..++..+-..
T Consensus 117 ~~liiP~iL~llDD---~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 117 WPLIIPPILNLLDD---YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred hhHHHhhHHHHhcC---CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 77777776677763 478889999999999998776666 5556666655554432 1245667788
Q ss_pred HHHHHHHHHhc
Q 001968 256 AVGCVLAVVSK 266 (989)
Q Consensus 256 a~~~l~~i~~~ 266 (989)
|..|+..++..
T Consensus 194 ay~~L~~L~~~ 204 (282)
T PF10521_consen 194 AYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHh
Confidence 88898888764
No 101
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=65.15 E-value=37 Score=30.19 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhhccccccc--cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 205 SSDFEVCTGVLDCMRRYISWID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~wi~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
+.++.+...++.|+.....-.+ ...+.+.+.++.+.+++.+ +++.++..|+.+|..+...
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccC
Confidence 3456777778888777554211 1223445788999998874 5799999999999999764
No 102
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.05 E-value=2.8e+02 Score=32.53 Aligned_cols=245 Identities=13% Similarity=0.172 Sum_probs=116.6
Q ss_pred HHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC
Q 001968 663 MAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (989)
Q Consensus 663 ~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~ 742 (989)
..|.+..|.|++ .-.+++..++.+++ ..+..||-.+...+-.++..- ..+++.++..|.+-+
T Consensus 44 q~I~kffk~FP~------------l~~~Ai~a~~DLcE--Ded~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~QlL 105 (556)
T PF05918_consen 44 QFIPKFFKHFPD------------LQEEAINAQLDLCE--DEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLVQLL 105 (556)
T ss_dssp HHHHHHHCC-GG------------GHHHHHHHHHHHHT---SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHT
T ss_pred HHHHHHHhhChh------------hHHHHHHHHHHHHh--cccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHHHHH
Confidence 445666666643 34677777777776 566778876666555555443 347888888777666
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001968 743 EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDL 822 (989)
Q Consensus 743 ~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~ 822 (989)
.+.+-.++-.+=..++.-++.+....|..+|..+... .. ...-+|+..+.|+..-+..-.
T Consensus 106 ~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~---------------~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 106 QTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KS---------------GDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp T---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------H---------------S-HHHHHHHHHHHHHHGGGS-
T ss_pred hcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----cc---------------CchHHHHHHHHHHHHHHhhCc
Confidence 5555455555556666777777666666555544321 01 112378888999987776655
Q ss_pred CccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCC
Q 001968 823 SSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDK 902 (989)
Q Consensus 823 ~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (989)
..++.++. -.+..+...+.-+.. | +...=+..+-+++....-=.. ....++. +.+++.+.. ++-+..
T Consensus 166 ~~~~~p~~---E~e~~i~~~ikkvL~--D--VTaeEF~l~m~lL~~lk~~~~-~~t~~g~-qeLv~ii~e----Qa~Ld~ 232 (556)
T PF05918_consen 166 PELLTPQK---EMEEFIVDEIKKVLQ--D--VTAEEFELFMSLLKSLKIYGG-KQTIEGR-QELVDIIEE----QADLDQ 232 (556)
T ss_dssp TTTS---H---HHHHHHHHHHHHHCT--T----HHHHHHHHHHHHTSGG----GSSHHHH-HHHHHHHHH----HHTTTS
T ss_pred HHHhhchH---HHHHHHHHHHHHHHH--h--ccHHHHHHHHHHHHhCccccc-cCChHHH-HHHHHHHHH----HhccCC
Confidence 55543211 122222221111111 2 222335555566655432000 0122333 334443322 112233
Q ss_pred CCCcccchhhHhHHHHHHHHHH---HHH--HHhHHHHHHHHHhcCCCC-CCCHHHHHHHHHHhcc
Q 001968 903 SFEFGDANTLVLFGEIVLAQKV---MYE--KFGNDFLVHFVTKGFPSA-HCPPDLAEQYCQKLQG 961 (989)
Q Consensus 903 ~f~~~d~~~~~~~~ei~~~l~~---~~~--~~~~~~l~~~~~~~~P~~-~~~~~~~~~f~~~l~~ 961 (989)
.|+..|..+ ++.+..+++. +.. ..+..|++++....||.. .++++.+.++++.+..
T Consensus 233 ~f~~sD~e~---Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE 294 (556)
T PF05918_consen 233 PFDPSDPES---IDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAE 294 (556)
T ss_dssp ---SSSHHH---HHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHH
T ss_pred CCCCcCHHH---HHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHH
Confidence 466666543 3333333322 111 234579988888899975 5677888899888754
No 103
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=64.89 E-value=1.3e+02 Score=36.66 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=101.5
Q ss_pred hhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch-------------hhHHHHHHHhHhhhhccccC
Q 001968 521 QEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV-------------PFIENILQSLQDTIARFTSM 587 (989)
Q Consensus 521 ~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~-------------p~~~~il~~l~~~l~~~~~~ 587 (989)
+.||+-.+.... +++ .+. +|.+-..|+++|.=+..+|...+. -++.+++..+.+.+. .++
T Consensus 808 R~~~~s~~ia~k-lld--~Ls--~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~- 880 (1030)
T KOG1967|consen 808 RNHPESSEIAEK-LLD--LLS--GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAP- 880 (1030)
T ss_pred cCCcccchHHHH-HHH--hcC--CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCC-
Confidence 346655444433 444 554 357899999999999988764432 244455555544443 111
Q ss_pred CcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhh
Q 001968 588 NYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINA 667 (989)
Q Consensus 588 ~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~ 667 (989)
...+....++++++++. +|.+.-.+-+..+++-++ +..+- .|..... +.+.++.-
T Consensus 881 ---------~~~K~~yl~~LshVl~~--vP~~vllp~~~~LlPLLL--------q~Ls~---~D~~v~v---stl~~i~~ 935 (1030)
T KOG1967|consen 881 ---------GSQKHNYLEALSHVLTN--VPKQVLLPQFPMLLPLLL--------QALSM---PDVIVRV---STLRTIPM 935 (1030)
T ss_pred ---------ccchhHHHHHHHHHHhc--CCHHhhccchhhHHHHHH--------HhcCC---Cccchhh---hHhhhhhH
Confidence 24578889999999998 454333333444333222 22211 1211111 12222222
Q ss_pred hccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCC-hhHhHHHHHHHHHHHhhhc-ccccCchHHHHHHHHccCC
Q 001968 668 LSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKV-EPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAESE 743 (989)
Q Consensus 668 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~i~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~ll~~~~ 743 (989)
..+.-+. -.......+.+.++.+-....++ -.+|+.+..+++.+.+.+. ....||-|.++..+....+
T Consensus 936 ~l~~~~t--------L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 936 LLTESET--------LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred HHHhccc--------cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC
Confidence 2211111 11234556667766554433322 5789999999998888544 4458999999988887663
No 104
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=63.01 E-value=33 Score=33.55 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhh-hcccccCchHHHHHHHHccCChhH---HHHHHHHHHHH---HHH
Q 001968 688 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT-LGASVFPYLPKALEQLLAESEPKE---MAGFLVLLNQL---ICK 760 (989)
Q Consensus 688 ~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~-l~~~~~p~l~~l~~~ll~~~~~~~---~~~~L~l~~~l---i~~ 760 (989)
|...++++...+. ......+-.+..-++.|+.. -++.+.|.+|+++..+-..+++.+ ....|.++..+ -..
T Consensus 36 y~~~Lpif~dGL~--Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 36 YHHYLPIFFDGLR--ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhhHHHHHHhhhh--ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555444 23334455566666777766 666789999999999988775433 23456677777 445
Q ss_pred hhhhhHHHHHHhHHHH
Q 001968 761 FNTLVHDILDEVFPAI 776 (989)
Q Consensus 761 ~~~~~~~~l~~~~~~l 776 (989)
.|....|++.++++.+
T Consensus 114 vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVL 129 (183)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5666777777666533
No 105
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.99 E-value=72 Score=30.85 Aligned_cols=86 Identities=22% Similarity=0.199 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcc-------cccCchHHHHHHHHccCC-hhHHHHHHHHHHHHHH
Q 001968 688 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGA-------SVFPYLPKALEQLLAESE-PKEMAGFLVLLNQLIC 759 (989)
Q Consensus 688 ~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~-------~~~p~l~~l~~~ll~~~~-~~~~~~~L~l~~~li~ 759 (989)
..+.+..+..+++. ++...+.+.++..+.+++...+. ...|.+|.+++.++.-.+ .......+..+..++.
T Consensus 65 ~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 65 GSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34445555666655 45567788888888888765542 247999999998887655 3444678899999999
Q ss_pred HhhhhhHHHHHHhHH
Q 001968 760 KFNTLVHDILDEVFP 774 (989)
Q Consensus 760 ~~~~~~~~~l~~~~~ 774 (989)
.|...+.|+-.++-.
T Consensus 144 ~~ptt~rp~~~ki~~ 158 (165)
T PF08167_consen 144 HHPTTFRPFANKIES 158 (165)
T ss_pred HCCccccchHHHHHH
Confidence 888887776555433
No 106
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.62 E-value=3.8e+02 Score=32.51 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHHhhHhhhhhc----------cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHH
Q 001968 502 NRLVALVYLETVTRYMKFIQEH----------TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE 571 (989)
Q Consensus 502 ~~~v~~~~~~~lg~y~~~l~~~----------~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~ 571 (989)
.++++.+.| +||.|.+++-.. ++.+-.++..++. -+.....++..|-.|+.++....... .+-++
T Consensus 480 e~l~qVa~W-~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~---~~~s~~~tk~yal~Al~KLSsr~~s~-~~ri~ 554 (866)
T KOG1062|consen 480 EPLLQVASW-CIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLM---SHSSDSTTKGYALTALLKLSSRFHSS-SERIK 554 (866)
T ss_pred hhHHHHHHH-HhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHH---hccchHHHHHHHHHHHHHHHhhcccc-HHHHH
Confidence 355654444 899999987542 2345555665554 22344678888888888888765443 44455
Q ss_pred HHHHHh
Q 001968 572 NILQSL 577 (989)
Q Consensus 572 ~il~~l 577 (989)
.++..+
T Consensus 555 ~lI~~~ 560 (866)
T KOG1062|consen 555 QLISSY 560 (866)
T ss_pred HHHHHh
Confidence 554444
No 107
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=59.89 E-value=1e+02 Score=28.80 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=67.3
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERN 80 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~ 80 (989)
+++.|..+-+|. .....-.-..+.+..+..++.+-..|...+.. +.++.+..+|+.+|+..+++.-..+-.+ .
T Consensus 2 ~~~~iekAT~~~--l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e--v 77 (139)
T cd03567 2 LEAWLNKATNPS--NREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSE--V 77 (139)
T ss_pred HHHHHHHHcCcc--CCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH--H
Confidence 566777777774 23445666778888888888876767666643 5678999999999999999754332211 1
Q ss_pred HHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHH
Q 001968 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (989)
Q Consensus 81 ~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l 121 (989)
.=|+++-+ +.+.+... ..+...+.-|++|+..++-.-
T Consensus 78 as~~Fl~e-l~kl~~~k---~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 78 GKFRFLNE-LIKLVSPK---YLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HhHHHHHH-HHHHhccc---cCCCCCCHHHHHHHHHHHHHH
Confidence 11222222 22221100 001235788999988776654
No 108
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.94 E-value=4.2e+02 Score=32.16 Aligned_cols=160 Identities=14% Similarity=0.231 Sum_probs=83.5
Q ss_pred chhhhhHHHHHHHHHH-HhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHH
Q 001968 545 VHVSRRASYLFMRVVK-LLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSD 623 (989)
Q Consensus 545 ~~v~~~A~~al~~l~~-~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~ 623 (989)
.-+|+|.+..+..-+. .|+..+.|.+ ..++..++.....+ --++....++-.++.--..+++...+
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~---Y~a~lnLL~d~~D~----------vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKPLL---YCAFLNLLQDQNDL----------VVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHHHH---HHHHHHhcCccccc----------eeehHHHHHHHHhhhhccCChhhhhh
Confidence 3467887777765554 3444444432 23333344321100 01334455566566544445677778
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCC
Q 001968 624 YLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFP 703 (989)
Q Consensus 624 ~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 703 (989)
|+..+...++.-+++. ... | ... +++..++.+....+ +.+.|+..++.+.+-.+=+.+.
T Consensus 568 ~lenlf~~lfkll~~~----~e~----D--tk~---~VL~~ls~lI~r~~--------e~I~P~~~~ivq~lp~LWe~s~ 626 (978)
T KOG1993|consen 568 YLENLFVLLFKLLKAV----EEC----D--TKT---SVLNLLSTLIERVS--------EHIAPYASTIVQYLPLLWEESE 626 (978)
T ss_pred hHHHHHHHHHHHHHHH----hhh----h--hHH---HHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHhhhc
Confidence 8776655555443332 110 1 112 22333333322121 1233444555555444444455
Q ss_pred CChhHhHHHHHHHHHHHhhhcccccCchHHHHHHH
Q 001968 704 KVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQL 738 (989)
Q Consensus 704 ~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l 738 (989)
+.+-+|.++...++..+.++|.+-.++-|-+.+.+
T Consensus 627 ~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI 661 (978)
T KOG1993|consen 627 EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI 661 (978)
T ss_pred cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 67788999999999999999988665555554433
No 109
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=57.66 E-value=1.1e+02 Score=28.26 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
.+.|..+.+++ .....-.-..+.+..+..++.+-..|...|.. ++++.++..|+.+|+..+++.-..+-.+- .
T Consensus 2 ~~~I~kATs~~--~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i--~ 77 (133)
T cd03561 2 TSLIERATSPS--LEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV--A 77 (133)
T ss_pred hHHHHHHcCcc--cCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH--h
Confidence 34556666653 23344666778888888887776666666643 35799999999999999987533222111 1
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC
Q 001968 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL 128 (989)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~ 128 (989)
=|+++.+ +...+... ...+.-|++|+..++..- ...|+.
T Consensus 78 s~~fl~~-l~~l~~~~------~~~~~~Vk~kil~ll~~W-~~~f~~ 116 (133)
T cd03561 78 DKEFLLE-LVKIAKNS------PKYDPKVREKALELILAW-SESFGG 116 (133)
T ss_pred hHHHHHH-HHHHhCCC------CCCCHHHHHHHHHHHHHH-HHHhcC
Confidence 1344444 33332100 135778999998888776 335543
No 110
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=57.41 E-value=3.6e+02 Score=31.26 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC
Q 001968 234 AFIPLLFELILADGLPEQFRGAAVGCVLAVVSKR 267 (989)
Q Consensus 234 ~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~ 267 (989)
.++..+++-+. +++.-+|.+|+.||....-..
T Consensus 487 ~yvrhIyNR~i--LEN~ivRsaAv~aLskf~ln~ 518 (898)
T COG5240 487 KYVRHIYNRLI--LENNIVRSAAVQALSKFALNI 518 (898)
T ss_pred hHHHHHHHHHH--HhhhHHHHHHHHHHHHhccCc
Confidence 46667776553 367889999999998776543
No 111
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.35 E-value=67 Score=40.20 Aligned_cols=148 Identities=11% Similarity=0.143 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhhcC--CCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHH-HHHHHHHHHHHhh
Q 001968 686 LMFKQTLDVLLQILVVF--PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAG-FLVLLNQLICKFN 762 (989)
Q Consensus 686 ~~~~~~~~~~~~~l~~~--~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~-~L~l~~~li~~~~ 762 (989)
.++.+..|++..++++. .++++++.++..++.++.-.--......+|.++..+-.+.. +.+.+ ...-+|.+.-.
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~-p~IRsN~VvalgDlav~-- 991 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPS-PRIRSNLVVALGDLAVR-- 991 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-ceeeecchheccchhhh--
Confidence 35566677777777653 45678988888888877433222224456666664433322 11111 11112233333
Q ss_pred hhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHH
Q 001968 763 TLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLL 842 (989)
Q Consensus 763 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l 842 (989)
.++++++..++.|..+.. +.|++|+..+-.++.++.++.-. .++++..+-.++
T Consensus 992 ------fpnlie~~T~~Ly~rL~D---------------~~~~vRkta~lvlshLILndmiK------VKGql~eMA~cl 1044 (1251)
T KOG0414|consen 992 ------FPNLIEPWTEHLYRRLRD---------------ESPSVRKTALLVLSHLILNDMIK------VKGQLSEMALCL 1044 (1251)
T ss_pred ------cccccchhhHHHHHHhcC---------------ccHHHHHHHHHHHHHHHHhhhhH------hcccHHHHHHHh
Confidence 345666777778888864 56899999999999998876532 255666655555
Q ss_pred HHhhcCCCChhhhhHHHHHHHHHHHH
Q 001968 843 LYTSCNHKDYLVRKACVQIFIRLIKD 868 (989)
Q Consensus 843 ~~~~~~~~~~~~~k~a~~~l~~~i~~ 868 (989)
..+++.++..|=+|+.++-+.
T Consensus 1045 -----~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1045 -----EDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred -----cCCcHHHHHHHHHHHHHhhhc
Confidence 678999988888888877654
No 112
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=55.37 E-value=11 Score=26.52 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=18.7
Q ss_pred CCCCCCchhhhhHHHHHHHHHH
Q 001968 539 GIHHPNVHVSRRASYLFMRVVK 560 (989)
Q Consensus 539 ~l~~~~~~v~~~A~~al~~l~~ 560 (989)
.+.++++.++..|+.++.++|+
T Consensus 20 ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 20 LLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHhC
Confidence 5556889999999999999873
No 113
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=54.97 E-value=27 Score=29.23 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHH
Q 001968 18 IDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTL 63 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L 63 (989)
.|+..|.+|-..|.++. +++++......+.++.+..+|..|+..|
T Consensus 43 ~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp SSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 48999999999999996 5778999999998877677899888765
No 114
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=54.52 E-value=1.7e+02 Score=35.56 Aligned_cols=123 Identities=16% Similarity=0.256 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHhc-CCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 001968 18 IDSMLKSQAVNFCQQIKE-TPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~ 93 (989)
-|.+.|+--.-||..+-+ .|+-.-+|...+++ +.|+++|-+|++++-.. .. .++-..++.-+.+.
T Consensus 67 rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--------~~---~el~~~~~~~ik~~ 135 (757)
T COG5096 67 RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--------RV---KELLGNIIDPIKKL 135 (757)
T ss_pred cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--------Ch---HHHHHHHHHHHHHH
Confidence 488888888888888766 44433333333333 35689999999887532 22 23444555555554
Q ss_pred hhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhh-HHHHHH-hh-cCCchhHHHHHHHHHHHHHH
Q 001968 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSV-FVDFLP-QL-NKGSMVIDMFCRVLNSLDDE 161 (989)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~-~~~l~~-~~-~~~~~~~~~~L~iL~~l~Ee 161 (989)
. ..+.++||+..+.+++.++..+ ++-.++. ..++.. ++ .++|.++-+.+..|..+.+|
T Consensus 136 l---------~d~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 136 L---------TDPHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred c---------cCCcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2 2357899999999999997543 2445554 444444 33 24567788899999988888
No 115
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.77 E-value=6.4e+02 Score=33.04 Aligned_cols=82 Identities=7% Similarity=0.068 Sum_probs=47.3
Q ss_pred hHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc---hhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHH
Q 001968 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL---VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHI 603 (989)
Q Consensus 527 L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l---~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 603 (989)
+.++...|++...|+|++..||.-.+-++..|-+-+.++. .+++.+|.+-+...+..... ..+. ....+.++
T Consensus 46 ~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d--~~sp---~f~r~~~l 120 (1266)
T KOG1525|consen 46 LLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGD--VESP---YFKRYFYL 120 (1266)
T ss_pred HHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccC--CCCc---chhhHHHH
Confidence 3344444554456778888898887777777777777654 23555555555444432211 1100 12346678
Q ss_pred HHHHHHHHcc
Q 001968 604 FEAIGLLIGM 613 (989)
Q Consensus 604 ~eai~~li~~ 613 (989)
.|.++.+...
T Consensus 121 letl~~~k~~ 130 (1266)
T KOG1525|consen 121 LETLAKVKFC 130 (1266)
T ss_pred HHHHHHhHHH
Confidence 8888877643
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=53.72 E-value=5.9e+02 Score=32.63 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC
Q 001968 209 EVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKR 267 (989)
Q Consensus 209 ~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~ 267 (989)
+....+|+.+..+-.+++-+... +..+|.+..++.+ +...+|..|++.|++++..-
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L-DRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL-DRVLPYFVHLLMD--SEADVRATALETLTELLALV 493 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH-hhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhhc
Confidence 34456666666666666544332 5688888888874 68999999999999998753
No 117
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=53.61 E-value=2.9e+02 Score=29.05 Aligned_cols=144 Identities=10% Similarity=0.140 Sum_probs=78.8
Q ss_pred CCChhHhHHHHHHHHHHHhhhccccc--CchHHHHHHHHccCC-hhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH
Q 001968 703 PKVEPLRCKVTSFIHRMVDTLGASVF--PYLPKALEQLLAESE-PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGR 779 (989)
Q Consensus 703 ~~~~~i~e~~~~~~~~~~~~l~~~~~--p~l~~l~~~ll~~~~-~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~ 779 (989)
..+..+|+++..++..++..+.++.+ .-+..+++.+...++ ...+...+.-+..++ +.+.-..+... .+++.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~~~~~~----~i~~~ 84 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFSPESAV----KILRS 84 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCChhhHH----HHHHH
Confidence 45678888888888888888776542 123333443333332 122223344444555 23332222222 33333
Q ss_pred HHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHH
Q 001968 780 IFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACV 859 (989)
Q Consensus 780 ~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~ 859 (989)
++.-..-. .--...|...|.++..++.+....+ ..-...++.. +++.+.+..||.--..++
T Consensus 85 l~~~~~~q-------------~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~----~i~~~~gEkDPRnLl~~F 145 (262)
T PF14500_consen 85 LFQNVDVQ-------------SLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYG----FIQLIDGEKDPRNLLLSF 145 (262)
T ss_pred HHHhCChh-------------hhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHH----HHHHhccCCCHHHHHHHH
Confidence 33322211 1223468999999999998865444 2222334444 444444567887777888
Q ss_pred HHHHHHHHHhh
Q 001968 860 QIFIRLIKDWC 870 (989)
Q Consensus 860 ~~l~~~i~~~~ 870 (989)
+.+..++..|.
T Consensus 146 ~l~~~i~~~~~ 156 (262)
T PF14500_consen 146 KLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHhcc
Confidence 88888888774
No 118
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.57 E-value=58 Score=34.22 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCC
Q 001968 190 EQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMD 269 (989)
Q Consensus 190 ~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~ 269 (989)
..++.++...|. +..+-+...++++++..++-++.+.-...+++..+..++. .+....|++.|-++++..-.
T Consensus 187 ~~~l~~Ll~lL~---n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~-----t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 187 FQILTFLLGLLE---NGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQ-----TDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHHHh---CCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhC-----CccHHHHHHHHHHHHhhccc
Confidence 455666666666 4556788999999999999999887677889988888885 57888999999998886544
Q ss_pred c
Q 001968 270 P 270 (989)
Q Consensus 270 ~ 270 (989)
+
T Consensus 259 ~ 259 (262)
T PF14225_consen 259 P 259 (262)
T ss_pred c
Confidence 3
No 119
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=52.09 E-value=6.1e+02 Score=32.31 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=40.2
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHH
Q 001968 6 KAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEV 66 (989)
Q Consensus 6 ~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~ 66 (989)
..+..+-|+ |+..|+.|-++|.++.. +.+-......| .++++.||.-|+..|...
T Consensus 625 ~L~~~L~D~----d~~VR~~Av~~L~~~~~-~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 625 ELAPYLADP----DPGVRRTAVAVLTETTP-PGFGPALVAAL-GDGAAAVRRAAAEGLREL 679 (897)
T ss_pred HHHHHhcCC----CHHHHHHHHHHHhhhcc-hhHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 344444455 89999999999998864 55556666666 456688999999888654
No 120
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=50.89 E-value=47 Score=31.02 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=39.6
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
+-..++.+...+.--..++..+-. .+.+++|.++.+|-.++..+++.|+..+.
T Consensus 22 ileicD~In~~~~~~k~a~rai~k--rl~~~n~~v~l~AL~LLe~~vkNCG~~fh 74 (139)
T cd03567 22 IQAFCEQINKEPEGPQLAVRLLAH--KIQSPQEKEALQALTVLEACMKNCGERFH 74 (139)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 445556666556555566666665 67778999999999999999999997663
No 121
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=50.48 E-value=1.8e+02 Score=25.89 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
++.|..+-++. ..........+.+.-..+.++....+...|.. ++++.+.+.|+.+|+..+++.-...-.+-+.
T Consensus 2 ~~~v~~AT~~~--~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~- 78 (115)
T cd00197 2 EKTVEKATSNE--NMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS- 78 (115)
T ss_pred hHHHHHHcCCC--CCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH-
Confidence 34555555542 11223455556666666666655555555432 3578999999999999999754333322211
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHH
Q 001968 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (989)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l 121 (989)
+.++...+...+.. ..+...+..||+|+-.++...
T Consensus 79 -~~~~~~l~~~~~~~----~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 79 -NDFAVELLKFDKSK----LLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred -hHHHHHHHHhhccc----cccCCCChHHHHHHHHHHHHH
Confidence 22333333211110 011235789999998887654
No 122
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.83 E-value=5.5e+02 Score=31.17 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 001968 50 CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLI 129 (989)
Q Consensus 50 ~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~ 129 (989)
+.++.|-.-+++.+ |.--|.++-..|-..|+..+.+. +-++.-+-+.++.+..+
T Consensus 298 S~n~sVVmA~aql~-------y~lAP~~~~~~i~kaLvrLLrs~--------------~~vqyvvL~nIa~~s~~----- 351 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLF-------YHLAPKNQVTKIAKALVRLLRSN--------------REVQYVVLQNIATISIK----- 351 (968)
T ss_pred cCCcHHHHHHHhHH-------HhhCCHHHHHHHHHHHHHHHhcC--------------CcchhhhHHHHHHHHhc-----
Confidence 34566666666664 44455555566666676655532 22333344445555332
Q ss_pred ChhhHHHHHHhh---cCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001968 130 WSSVFVDFLPQL---NKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRS 205 (989)
Q Consensus 130 Wp~~~~~l~~~~---~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~ 205 (989)
-|++|.--+..+ .+.+ ....+=+.||..|..|- .+..|+.=+..-+. +
T Consensus 352 ~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es-------------------------ni~~ILrE~q~YI~---s 403 (968)
T KOG1060|consen 352 RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANES-------------------------NISEILRELQTYIK---S 403 (968)
T ss_pred chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc-------------------------cHHHHHHHHHHHHh---c
Confidence 234333333332 2223 34445566666655542 13333322222222 2
Q ss_pred CCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhh
Q 001968 206 SDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQT 279 (989)
Q Consensus 206 ~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~ 279 (989)
.+-+++..+.++++.+.+-+ .-..+..++.+..++.+ .+..+..+|+..+-.++.+ +|....+++..
T Consensus 404 ~d~~faa~aV~AiGrCA~~~---~sv~~tCL~gLv~Llss--hde~Vv~eaV~vIk~Llq~--~p~~h~~ii~~ 470 (968)
T KOG1060|consen 404 SDRSFAAAAVKAIGRCASRI---GSVTDTCLNGLVQLLSS--HDELVVAEAVVVIKRLLQK--DPAEHLEILFQ 470 (968)
T ss_pred CchhHHHHHHHHHHHHHHhh---CchhhHHHHHHHHHHhc--ccchhHHHHHHHHHHHHhh--ChHHHHHHHHH
Confidence 23356666666666554321 11224567777777764 3666777777777777763 45555555543
No 123
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=47.40 E-value=3.1e+02 Score=33.17 Aligned_cols=68 Identities=9% Similarity=0.089 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHH
Q 001968 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLA 262 (989)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~ 262 (989)
.+.++..+..++..-...+..++..|+.++.....-. .....+.++..+.+...+.++|.+|...|..
T Consensus 519 ~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~------~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 519 HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC------PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC------cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3444544444433221335678888999888653322 2456777888887777889999999877654
No 124
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=47.13 E-value=5.5e+02 Score=30.35 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHH
Q 001968 600 GSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLL 641 (989)
Q Consensus 600 ~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~ 641 (989)
...+.|++.. .+ ++++-+......+....+...+...+
T Consensus 357 n~~lw~~~~~--~~--L~~~lr~~~~~~i~~~~~~~~~~~~~ 394 (559)
T PF14868_consen 357 NLLLWEGFPL--NA--LSDELRKQIVQEIFTLCFAFCQKWLS 394 (559)
T ss_pred chHHHHhccH--Hh--CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3666777653 44 46777888888888777766555544
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=46.64 E-value=2.1e+02 Score=34.82 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhC
Q 001968 416 EYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 495 (989)
Q Consensus 416 ~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~ 495 (989)
+.+|-++--+..++...|+.++-.+... ..-+ ...+..-+=.|+..++.+.+ ...++.++..+.
T Consensus 70 ElKrL~ylYl~~yak~~P~~~lLavNti-~kDl---~d~N~~iR~~AlR~ls~l~~----------~el~~~~~~~ik-- 133 (757)
T COG5096 70 ELKRLLYLYLERYAKLKPELALLAVNTI-QKDL---QDPNEEIRGFALRTLSLLRV----------KELLGNIIDPIK-- 133 (757)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHH-Hhhc---cCCCHHHHHHHHHHHHhcCh----------HHHHHHHHHHHH--
Confidence 3444444445555566676655444332 2222 23455555555655554432 234555555544
Q ss_pred CCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHH-HHHhhcccCCCCCCchhhhhHHHHHHHHHHH
Q 001968 496 KLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVV-LAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (989)
Q Consensus 496 ~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~v-l~~l~~~~~l~~~~~~v~~~A~~al~~l~~~ 561 (989)
....++|++|+-...-+++.+. +..+++.+.. +.-+.. ..+.+++|.|.+.|..++..++..
T Consensus 134 ~~l~d~~ayVRk~Aalav~kly---~ld~~l~~~~g~~~~l~-~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 134 KLLTDPHAYVRKTAALAVAKLY---RLDKDLYHELGLIDILK-ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHccCCcHHHHHHHHHHHHHHH---hcCHhhhhcccHHHHHH-HHhhCCCchHHHHHHHHHHHhchh
Confidence 2345789999422211455444 3344443333 222221 133468899999999999888877
No 126
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=46.22 E-value=4.3e+02 Score=30.31 Aligned_cols=205 Identities=16% Similarity=0.288 Sum_probs=95.6
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCCc
Q 001968 67 VRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKGS 145 (989)
Q Consensus 67 I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~-~Wp~~~~~l~~~~~~~~ 145 (989)
+-.+++-||+. ..||. .++++... |+. .+-.-.+..|+.-+....+.=....||. +|...++-+..+ +.|+
T Consensus 139 vP~d~sYLpE~--S~iRa-ai~f~i~~---Gkk-Gpe~vpp~lvkvvl~~ia~vgeS~qyPPVNWaalLsPLMRl-nfGe 210 (589)
T PF11229_consen 139 VPTDFSYLPES--SFIRA-AIDFLIEA---GKK-GPESVPPSLVKVVLKPIATVGESYQYPPVNWAALLSPLMRL-NFGE 210 (589)
T ss_pred CCCccccCcch--hHHHH-HHHHHHHc---ccc-CCccCCHHHHHHHHHHhhhcCCCCCCCCccHHHHhhHHHhc-cccH
Confidence 44567777764 34554 45565543 211 1111234444444333333223567876 999999998887 4455
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCHHHHHHHHHHhhccccc
Q 001968 146 MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYD-IVSMYRSSDFEVCTGVLDCMRRYISW 224 (989)
Q Consensus 146 ~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~-iL~~~~~~~~~l~~~~L~~l~~~i~w 224 (989)
......+++-. -.. .. .+....++..|.. -+- ..-+....+..+.-+..|+.-
T Consensus 211 Evq~lCLeiAv---tQa-----qS----------------SqsAa~fLg~WlsPpli--~sLs~~tk~~L~~Sl~~wmkh 264 (589)
T PF11229_consen 211 EVQQLCLEIAV---TQA-----QS----------------SQSAAMFLGSWLSPPLI--HSLSVNTKKYLFESLSLWMKH 264 (589)
T ss_pred HHHHHHHHHHH---Hhc-----cc----------------cccHHHHHHhhcCcchh--hhhhHHHHHHHHHHHHHHHhh
Confidence 54444444310 000 00 0013444444432 000 011234455566666666666
Q ss_pred cccccccccccHH-HHHHHHHh--cCCChhHHhHHHHHHHHHHhcCCCcchhh-hHhhhhhhhhhhcccc---CCcchHH
Q 001968 225 IDINLIANDAFIP-LLFELILA--DGLPEQFRGAAVGCVLAVVSKRMDPQSKL-NLLQTLQISRVFGLVS---EDGESEL 297 (989)
Q Consensus 225 i~~~~~~~~~~l~-~l~~~l~~--~~~~~~~~~~a~~~l~~i~~~~~~~~~k~-~li~~l~l~~~~~~~~---~~~d~~~ 297 (989)
++-+.+ ..|+. +..+.+.. ...+++++..++.-|...+... .|.... .++-. ....+++.+. +++|.+.
T Consensus 265 Vsedqi--Q~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP-~P~~h~Ws~Lc~-ttekIF~lLPn~i~~~eveL 340 (589)
T PF11229_consen 265 VSEDQI--QAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLP-SPAQHCWSLLCE-TTEKIFDLLPNKIQRNEVEL 340 (589)
T ss_pred CCHHHH--HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCC-ChhhHHHHHHHH-HHHHHHHhCcccccHHHHHH
Confidence 554433 23443 22333331 2356888888888887755432 333221 11111 1223443332 3345555
Q ss_pred HHHHHHHHHHHH
Q 001968 298 VSKVAALLTGYA 309 (989)
Q Consensus 298 ~~~~~~l~~~~~ 309 (989)
...+++++..+-
T Consensus 341 Yi~vAkCLSEMt 352 (589)
T PF11229_consen 341 YIGVAKCLSEMT 352 (589)
T ss_pred HHHHHHHHhhcC
Confidence 555666555443
No 127
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=46.00 E-value=1.6e+02 Score=27.70 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
+-..++.+...+.--..++..|-. .+.+++|.|+.+|-.++..+++.|+..+.
T Consensus 21 il~icD~I~~~~~~~k~a~ral~K--Rl~~~n~~v~l~AL~LLe~~vkNCG~~fh 73 (144)
T cd03568 21 ILDVCDKVKSDENGAKDCLKAIMK--RLNHKDPNVQLRALTLLDACAENCGKRFH 73 (144)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 344445555555555566666665 56678899999999999999999997653
No 128
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=44.80 E-value=6.1e+02 Score=30.24 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHH
Q 001968 189 VEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLA 262 (989)
Q Consensus 189 ~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~ 262 (989)
.+.++..+..++..-...+..++..++.+|.....- ......+.+++.+.+...++++|.+|+..|..
T Consensus 475 ~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~------~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 475 HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR------DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh------CchHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 344444444444421234567778888888743221 12345667777777767889999999887643
No 129
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=43.18 E-value=4.6e+02 Score=28.32 Aligned_cols=129 Identities=9% Similarity=0.121 Sum_probs=63.7
Q ss_pred hHhHHHHHHHHHHHhhhccc-----ccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHH
Q 001968 707 PLRCKVTSFIHRMVDTLGAS-----VFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIF 781 (989)
Q Consensus 707 ~i~e~~~~~~~~~~~~l~~~-----~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~ 781 (989)
.|..++...+..+++.+|++ +.-|.|.+.+. +......--+.+|.++...+-..+....+ .+.+++..++
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl-~~~asi~Vkp~lL~i~e~~~lpL~~~L~p----~l~~li~slL 144 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPL-FSYASIQVKPQLLDIYEKYYLPLGPALRP----CLKGLILSLL 144 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhcCccHHHHH----HHHHHHHHhc
Confidence 45555666666666666543 22333444442 22222222356666665555555554444 3445544444
Q ss_pred hhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHH
Q 001968 782 NIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQI 861 (989)
Q Consensus 782 ~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~ 861 (989)
.-++. +..|+.+.-+.++..+-...-.. +|-+.++..+ ...+..+-.|+.+
T Consensus 145 pGLed---------------e~sE~~~~~~~ll~~l~~~v~~~---------~F~~~lwl~i-----i~sp~~Rl~al~~ 195 (307)
T PF04118_consen 145 PGLED---------------EGSEFFDRTLKLLDKLKEAVGDK---------YFWQCLWLCI-----ITSPSRRLGALNY 195 (307)
T ss_pred ccccc---------------CCchHHHHHHHHHHHHHHhcChh---------HHHHHHHHHH-----hcCcchhHHHHHH
Confidence 44442 22334445566666554332111 3444555332 2466777778888
Q ss_pred HHHHHHHh
Q 001968 862 FIRLIKDW 869 (989)
Q Consensus 862 l~~~i~~~ 869 (989)
+.+-+...
T Consensus 196 l~~~l~~~ 203 (307)
T PF04118_consen 196 LLRRLPKF 203 (307)
T ss_pred HHHhCCcc
Confidence 87655443
No 130
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.03 E-value=3.4e+02 Score=33.10 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=37.8
Q ss_pred HHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhc
Q 001968 662 IMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG 724 (989)
Q Consensus 662 l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~ 724 (989)
|.....++|.+.+.. ...+.+.+|++..+++. .+....|.+|.++.|++..+-
T Consensus 315 laiaaN~Cksi~sd~--------f~~v~ealPlL~~lLs~--~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 315 LAIAANCCKSIRSDE--------FHFVMEALPLLTPLLSY--QDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhcCCCcc--------chHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhcc
Confidence 344566777665431 24567888998888873 456788889999999988764
No 131
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=41.99 E-value=4.1e+02 Score=27.39 Aligned_cols=131 Identities=8% Similarity=0.043 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHhcCC-chHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 001968 18 IDSMLKSQAVNFCQQIKETP-SICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~-~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~ 93 (989)
.+++.....-+.|-++-.+. ..-..+.+.|.. .+....++++...+-...+.+.. ....++..+.....+.
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-----~f~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-----HFPFLQPLLLLLILRI 87 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHhhc
Confidence 47778888888888888777 655666666543 33356677888877766544322 2256666666544442
Q ss_pred hhcCCCcccCCCChHHHHHH--HHHHHHHHHHhhcCCCChhhHHHHHHhh-cCC-chhHHHHHHHHHHHHH
Q 001968 94 LVDGKSSMRVLESPAFIRNK--LAQVLVTLIYFEYPLIWSSVFVDFLPQL-NKG-SMVIDMFCRVLNSLDD 160 (989)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~k--l~~~la~l~~~~~p~~Wp~~~~~l~~~~-~~~-~~~~~~~L~iL~~l~E 160 (989)
-.. ..++....... .+..+..+ ....|+.|++++.-+...+ +.+ +...-+.++.+..+++
T Consensus 88 ~~~------~~~~~~~~~~~i~~a~s~~~i-c~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 88 PSS------FSSKDEFWECLISIAASIRDI-CCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred ccc------cCCCcchHHHHHHHHHHHHHH-HHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 100 01123333333 34566666 4567889999999999999 443 3445566777766664
No 132
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=41.12 E-value=2.9e+02 Score=25.49 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=65.3
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
++.|..+.+|. .....-....+.+..+..++++-..+...|.. +.++.+...|+.+|+..+++.-..+-.+ .
T Consensus 2 ~~~i~kATs~~--l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~e---v 76 (133)
T smart00288 2 ERLIDKATSPS--LLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLE---V 76 (133)
T ss_pred hhHHHHHcCcC--CCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH---H
Confidence 45666777764 23445677788899999888877777766653 4679999999999999999753322211 1
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHH
Q 001968 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (989)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l 121 (989)
-....++-+.....+ ....+-|++|+..++-.-
T Consensus 77 ~s~~fl~~L~~l~~~-------~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 77 ASKEFLNELVKLIKP-------KYPLPLVKKRILELIQEW 109 (133)
T ss_pred HhHHHHHHHHHHHcC-------CCCcHHHHHHHHHHHHHH
Confidence 122233333332110 112223888887776654
No 133
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.96 E-value=7.1e+02 Score=29.88 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH
Q 001968 506 ALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (989)
Q Consensus 506 ~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~ 561 (989)
.-.| ++|.|..++..+|..-+.+.-.++. .-++...+.-|..--.+..+|+..
T Consensus 499 vggy--iLGEfg~LIa~~prss~~~qFsllh-~K~~~~s~~tr~lLLtTyiKl~nl 551 (938)
T KOG1077|consen 499 VGGY--ILGEFGNLIADDPRSSPAVQFSLLH-EKLHLCSPVTRALLLTTYIKLINL 551 (938)
T ss_pred hhhh--hhhhhhhhhcCCCCCChHHHHHHHH-HHhccCChhHHHHHHHHHHHHHhh
Confidence 4667 7999999999988877776665654 244434444455555555666654
No 134
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=39.83 E-value=8.5e+02 Score=30.44 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=28.5
Q ss_pred hHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCC
Q 001968 39 ICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSM 74 (989)
Q Consensus 39 ~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l 74 (989)
-|+....+++..++.+.|+.++..++..|.+..+.+
T Consensus 68 lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l 103 (1697)
T KOG3687|consen 68 LWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERL 103 (1697)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHH
Confidence 377777777766668999999999999998876544
No 135
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=39.43 E-value=3.4e+02 Score=29.14 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=52.3
Q ss_pred cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh--hcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchh
Q 001968 524 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK--AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGS 601 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~ 601 (989)
|...-.+|..|+. |+.+++| +|...-+.+..+|.+|+ ..+.|-++.+=+.+.+. . .+.+++.
T Consensus 102 ~~l~L~vLsnLfn--~~d~~~~-aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew----~---------~~vedqr 165 (378)
T KOG2753|consen 102 ASLRLQVLSNLFN--GVDKPTP-ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEW----N---------ISVEDQR 165 (378)
T ss_pred cccHHHHHHHHHh--ccCCCch-HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhC----C---------CCHHHHH
Confidence 4456678888887 8887776 99999999999999998 35566665553333322 1 1246788
Q ss_pred HHHHHHHHHHcc
Q 001968 602 HIFEAIGLLIGM 613 (989)
Q Consensus 602 ~l~eai~~li~~ 613 (989)
.++-++..++..
T Consensus 166 el~r~v~~al~~ 177 (378)
T KOG2753|consen 166 ELLRAVHKALKD 177 (378)
T ss_pred HHHHHHHHHHHh
Confidence 888888877765
No 136
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=38.71 E-value=3e+02 Score=25.83 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=63.5
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEER 79 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~ 79 (989)
.+++.|..+-++. .....-....+.+..+..++.+-.-|...|.. +.++.++.+|+.+|+..+++.-..+-.+
T Consensus 4 ~~~~~I~kATs~~--l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e-- 79 (142)
T cd03569 4 EFDELIEKATSEL--LGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE-- 79 (142)
T ss_pred hHHHHHHHHcCcc--cCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH--
Confidence 3666777777663 22334555667777777766665556555543 4679999999999999998753222111
Q ss_pred HHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHH
Q 001968 80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (989)
Q Consensus 80 ~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l 121 (989)
.-....++-+.+.+. ...+.-|++|+..++-.-
T Consensus 80 -vas~~fl~~l~~l~~--------~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 80 -VASREFMDELKDLIK--------TTKNEEVRQKILELIQAW 112 (142)
T ss_pred -HhhHHHHHHHHHHHc--------ccCCHHHHHHHHHHHHHH
Confidence 112222333333211 135678888888777665
No 137
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=38.26 E-value=91 Score=28.88 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=39.3
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
+-..++.+...+.--..++..|-. .+.+++|.++.+|-.++..+++.|+..+.
T Consensus 21 ~l~icD~i~~~~~~~k~a~r~l~k--rl~~~n~~v~l~AL~lLe~~vkNcg~~f~ 73 (133)
T smart00288 21 ILEICDLINSTPDGPKDAVRLLKK--RLNNKNPHVALLALTLLDACVKNCGSKFH 73 (133)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 334455665555555666666665 66678999999999999999999987653
No 138
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.26 E-value=1.6e+02 Score=26.82 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=42.3
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhh
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 569 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~ 569 (989)
....+++...++.-+..++.+|.. -+.+.++.|+..|-..+..+|..-.+.+...
T Consensus 22 ~~Eia~~t~~s~~~~~ei~d~L~k--RL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~ 76 (122)
T cd03572 22 YEEIAKLTRKSVGSCQELLEYLLK--RLKRSSPHVKLKVLKIIKHLCEKGNSDFKRE 76 (122)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHH--HhcCCCCcchHHHHHHHHHHHhhCCHHHHHH
Confidence 445556655566778899999997 8888889999999999999998766555443
No 139
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=38.18 E-value=8.8e+02 Score=30.18 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=97.6
Q ss_pred HHHHccCChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 001968 736 EQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLH 815 (989)
Q Consensus 736 ~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~ 815 (989)
.....+.+...+.-.+.++..+..+.+..+.++...+++.++.++- ...+.+++.....+.
T Consensus 301 ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk-------------------ekk~~l~d~l~~~~d 361 (815)
T KOG1820|consen 301 KIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK-------------------EKKSELRDALLKALD 361 (815)
T ss_pred HHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh-------------------hccHHHHHHHHHHHH
Confidence 3333444555556667788888998888889998888888887762 145778888888888
Q ss_pred HHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhh
Q 001968 816 VIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCC 895 (989)
Q Consensus 816 ~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (989)
.++..+. + ..+++.++..+ ++..+.+.-.+..++.+.+...++.. ...+-...+++.++
T Consensus 362 ~~~ns~~--l------~~~~~~I~e~l-----k~knp~~k~~~~~~l~r~~~~~~~~~--------~~~~t~~~l~p~~~ 420 (815)
T KOG1820|consen 362 AILNSTP--L------SKMSEAILEAL-----KGKNPQIKGECLLLLDRKLRKLGPKT--------VEKETVKTLVPHLI 420 (815)
T ss_pred HHHhccc--H------HHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHhhcCCcC--------cchhhHHHHhHHHh
Confidence 8776221 1 11344455444 88999998888999998888765321 11122233333211
Q ss_pred hhhccCCCCCcccchhhHhHHHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 001968 896 LYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFP 943 (989)
Q Consensus 896 ~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~~~~~~~~~l~~~~~~~~P 943 (989)
. +-+-.+..-|.... +.+.++.+++|.+.+..++....|
T Consensus 421 -~-----~~~D~~~~VR~Aa~---e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 421 -K-----HINDTDKDVRKAAL---EAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred -h-----hccCCcHHHHHHHH---HHHHHHHHHhhHHHHHHHHHhhcc
Confidence 1 11122332233322 334457888898887777766555
No 140
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=38.10 E-value=3.5e+02 Score=25.47 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=68.7
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
++.|.-+-++. .....-.-..+.+..+..++.+-.-|...|.. +.++++..+|+.+|+..+++.-..+-.+-
T Consensus 2 e~~iekATse~--l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev--- 76 (144)
T cd03568 2 DDLVEKATDEK--LTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV--- 76 (144)
T ss_pred hHHHHHHcCcc--CCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH---
Confidence 45666676664 23345566778888888887777777766643 46799999999999999997543322111
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcC
Q 001968 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYP 127 (989)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p 127 (989)
-....++-+.+.+. ...+.-|++|+..++-.-+ ..|+
T Consensus 77 ask~Fl~eL~kl~~--------~~~~~~Vk~kil~li~~W~-~~f~ 113 (144)
T cd03568 77 ASRDFTQELKKLIN--------DRVHPTVKEKLREVVKQWA-DEFK 113 (144)
T ss_pred hhHHHHHHHHHHhc--------ccCCHHHHHHHHHHHHHHH-HHhC
Confidence 12223333433311 1156789999888877653 3443
No 141
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.44 E-value=8.3e+02 Score=29.63 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchh-hhhcccccHHHHHHHH
Q 001968 414 MVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE-AMRTGAGHLSELVPML 492 (989)
Q Consensus 414 f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~-~~~~~~~~l~~ll~~l 492 (989)
-+.||+-+...+..|+.-.|+..-..|. .+...+++. .-+++-..+.-+.|.+... .. ....+..++..+
T Consensus 372 ~~~yRqlLiktih~cav~Fp~~aatvV~-~ll~fisD~------N~~aas~vl~FvrE~iek~p~L--r~~ii~~l~~~~ 442 (948)
T KOG1058|consen 372 NGKYRQLLIKTIHACAVKFPEVAATVVS-LLLDFISDS------NEAAASDVLMFVREAIEKFPNL--RASIIEKLLETF 442 (948)
T ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHH-HHHHHhccC------CHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHhh
Confidence 3689999999999988766765444443 333344331 1245555556666665432 11 123445555433
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhhHhhhh
Q 001968 493 LQTKLPCHSNRLVALVYLETVTRYMKFIQ 521 (989)
Q Consensus 493 l~~~~~~~~~~~v~~~~~~~lg~y~~~l~ 521 (989)
.+ +. .+.-.-...| ++|.|++-..
T Consensus 443 ~~--ir-S~ki~rgalw--i~GeYce~~~ 466 (948)
T KOG1058|consen 443 PQ--IR-SSKICRGALW--ILGEYCEGLS 466 (948)
T ss_pred hh--hc-ccccchhHHH--HHHHHHhhhH
Confidence 31 10 0111112344 7998887654
No 142
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.37 E-value=7.1e+02 Score=28.53 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=45.0
Q ss_pred CchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhh
Q 001968 525 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA 582 (989)
Q Consensus 525 ~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 582 (989)
..+..++..+.. ...+|+..+|.+||..+.+....|+.....|-..++..+..-+-
T Consensus 254 ~lL~s~~~~la~--ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~ 309 (533)
T KOG2032|consen 254 GLLGSVLLSLAN--KATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY 309 (533)
T ss_pred ccHHHHHHHHHH--hccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh
Confidence 567777777775 66778889999999999999998888888887777777765554
No 143
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=35.14 E-value=3e+02 Score=27.52 Aligned_cols=138 Identities=14% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhccc----ccCchHH--
Q 001968 660 QIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS----VFPYLPK-- 733 (989)
Q Consensus 660 ~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~----~~p~l~~-- 733 (989)
+++.+++.+...++... .+.+.+++..+..+-. ..+...++.+-.+++..++.+|++ +.|+-..
T Consensus 19 ~vl~v~s~lf~~lg~~~--------~~~l~~~L~~l~~lr~--~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~ 88 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERS--------SPLLKPILKTLGDLRE--SEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNA 88 (198)
T ss_pred HHHHHHHHHHHHHhhhc--------cHHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCC
Q ss_pred ---------HHHHHHccCChhHHHHHHH-------HHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC
Q 001968 734 ---------ALEQLLAESEPKEMAGFLV-------LLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNT 797 (989)
Q Consensus 734 ---------l~~~ll~~~~~~~~~~~L~-------l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 797 (989)
+++.|-+.....+++-|.. .+.+.+.+++..-.+.-..++..+...++.++..
T Consensus 89 ~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~----------- 157 (198)
T PF08161_consen 89 DDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPG----------- 157 (198)
T ss_pred CcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHH-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001968 798 EEIREVQELQRTLYTFLHVIAT 819 (989)
Q Consensus 798 ~~~~~~pd~~~~~~~ll~~~~~ 819 (989)
-.+.=.|+.++|=.+...+.+
T Consensus 158 -FC~~P~D~~~~F~~~a~~L~~ 178 (198)
T PF08161_consen 158 -FCNYPTDLAESFPSFAKLLGN 178 (198)
T ss_pred -hcCCcccHHHHHHHHHHHHHH
No 144
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=34.90 E-value=1.1e+02 Score=28.62 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=37.0
Q ss_pred HhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 514 TRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 514 g~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
-..++-+...+..-..++..|-. .+.++++.++.+|-.++..+++.|+..+.
T Consensus 26 leicD~In~~~~~~k~a~ral~k--rl~~~n~~vql~AL~LLe~~vkNCG~~fh 77 (142)
T cd03569 26 LEICDMIRSKDVQPKYAMRALKK--RLLSKNPNVQLYALLLLESCVKNCGTHFH 77 (142)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHHHHHCCHHHH
Confidence 33444554445555566666665 56668899999999999999999987553
No 145
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.63 E-value=3.7e+02 Score=29.64 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHh---CCCCCCCC-chHHHHHHHH
Q 001968 437 QVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQ---TKLPCHSN-RLVALVYLET 512 (989)
Q Consensus 437 l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~---~~~~~~~~-~~v~~~~~~~ 512 (989)
++.....+..++.+ .+-..++++|..+. ...-+.+|++++.. ..+...-+ ..-.+.+
T Consensus 176 lq~yf~~It~a~~~---~~~~~r~~aL~sL~-------------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~--- 236 (343)
T cd08050 176 LQLYFEEITEALVG---SNEEKRREALQSLR-------------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIY--- 236 (343)
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHhc-------------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHH---
Q ss_pred HHhhHhhhhhcc---------CchHHHHHHhhcccCCCCCCc------hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHh
Q 001968 513 VTRYMKFIQEHT---------QYIPVVLAAFLDERGIHHPNV------HVSRRASYLFMRVVKLLKAKLVPFIENILQSL 577 (989)
Q Consensus 513 lg~y~~~l~~~~---------~~L~~vl~~l~~~~~l~~~~~------~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l 577 (989)
+.+..+-|-.+| +++|.++..+++ ---.+.+ .+|.-|+..+..+|+.+...-...-+.++..+
T Consensus 237 lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~--~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl 314 (343)
T cd08050 237 LMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVA--KQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTL 314 (343)
T ss_pred HHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhh--HhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q ss_pred HhhhhccccCCcccccCCCCcchhHHHHHHHHH
Q 001968 578 QDTIARFTSMNYASKELSGSEDGSHIFEAIGLL 610 (989)
Q Consensus 578 ~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~l 610 (989)
...+..... .....|.|+..+
T Consensus 315 ~k~l~d~~~------------~~~~~YGAi~GL 335 (343)
T cd08050 315 LKALLDPKK------------PLTTHYGAIVGL 335 (343)
T ss_pred HHHHcCCCC------------CcchhhHHHHHH
No 146
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.60 E-value=93 Score=27.85 Aligned_cols=50 Identities=22% Similarity=0.133 Sum_probs=38.8
Q ss_pred hhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhh
Q 001968 518 KFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 569 (989)
Q Consensus 518 ~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~ 569 (989)
+.....++....++..|.. .+.+++++++..|-+++..+++.|.+.+..+
T Consensus 26 d~~~~~~~~~~~~~~~l~k--Rl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~ 75 (115)
T cd00197 26 DLINETNVGPKEAVDAIKK--RINNKNPHVVLKALTLLEYCVKNCGERFHQE 75 (115)
T ss_pred HHHHCCCccHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 3333445667778887776 6777899999999999999999999766543
No 147
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=34.18 E-value=1.2e+02 Score=28.03 Aligned_cols=53 Identities=19% Similarity=0.012 Sum_probs=37.9
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
+-..++-+...+.--..++..|-. .+.+++|.++.+|..++..+++.|+..+.
T Consensus 21 il~icd~I~~~~~~~k~a~raL~k--rl~~~n~~vql~AL~lLd~~vkNcg~~f~ 73 (133)
T cd03561 21 NLELCDLINLKPNGPKEAARAIRK--KIKYGNPHVQLLALTLLELLVKNCGKPFH 73 (133)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHhCChHHH
Confidence 334445555545555666666665 56678899999999999999999987653
No 148
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=33.71 E-value=60 Score=31.37 Aligned_cols=73 Identities=10% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhh
Q 001968 506 ALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA 582 (989)
Q Consensus 506 ~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 582 (989)
+-.++|++-..-+-...+- -+..+++.+.. |+.+ +..++.-++..+.+++..++..+.+.++.+++.+...+.
T Consensus 44 RK~ayE~lytlLd~~~~~~-~~~~~~~~v~~--GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 44 RKAAYECLYTLLDTCLSRI-DISEFLDRVEA--GLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHSTCSSS--HHHHHHHHHH--TTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHHHHHHHHh--hcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 3444555554444322222 26666777776 9987 789999999999999999998888888777777776665
No 149
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.66 E-value=1.1e+02 Score=28.63 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=39.4
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
+-..++.+...+..-..++..|-. -+.+++|.++..|-.++-.+++.|+..+.
T Consensus 26 ~l~icD~i~~~~~~~kea~~~l~k--rl~~~~~~vq~~aL~lld~lvkNcg~~f~ 78 (140)
T PF00790_consen 26 ILEICDLINSSPDGAKEAARALRK--RLKHGNPNVQLLALTLLDALVKNCGPRFH 78 (140)
T ss_dssp HHHHHHHHHTSTTHHHHHHHHHHH--HHTTSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344556666666666666666665 56668899999999999999999987663
No 150
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=33.57 E-value=4.2e+02 Score=31.15 Aligned_cols=173 Identities=16% Similarity=0.174 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHH--HHHHHHHHHHHHH-----
Q 001968 688 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM--AGFLVLLNQLICK----- 760 (989)
Q Consensus 688 ~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~--~~~L~l~~~li~~----- 760 (989)
|.++.....++++ +.+++.+.+++...+.|.+.-..-+. -|...+++.++..+.+.+. ...|.++..+++-
T Consensus 190 F~qIF~lc~qiLE-~~~~~SLi~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq 267 (1053)
T COG5101 190 FPQIFGLCKQILE-YSRDESLIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQ 267 (1053)
T ss_pred HHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcc
Confidence 3444455555555 35567777777776666655543211 1234566655555532111 2334444444442
Q ss_pred hhhhhHHHHHHhHHHHHHH-HHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHH
Q 001968 761 FNTLVHDILDEVFPAIAGR-IFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIM 839 (989)
Q Consensus 761 ~~~~~~~~l~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il 839 (989)
+++.....+...+..+... .+.+......-.....+.+ .+.-+..+..-.|+.++...+.+ ++-++.+ .+..+
T Consensus 268 ~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~--~neq~Fvq~LA~fL~s~~~~~~~-lLE~~e~---~e~ll 341 (1053)
T COG5101 268 ENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMD--KNEQIFVQKLAQFLSSLYEVYIS-LLEAREM---AENLL 341 (1053)
T ss_pred cchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccC--hhHHHHHHHHHHHHHHHHHHHHH-HhcChhH---HHHHH
Confidence 1111111222222211111 1111111100000000000 02234455566666666665532 2222222 34444
Q ss_pred HH---HHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 840 QL---LLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 840 ~~---l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
.+ +++.. ...++++.|+|+..|.+++...
T Consensus 342 nah~YLiqiS-rInereiFkt~leyW~klVadL 373 (1053)
T COG5101 342 NAHGYLIQIS-RINEREIFKTALEYWNKLVADL 373 (1053)
T ss_pred HHHHHhhhhh-hccHHHHHHHHHHHHHHHHHHH
Confidence 43 33333 5679999999999999998764
No 151
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=33.35 E-value=3.2e+02 Score=29.36 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=67.5
Q ss_pred ccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh-ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH
Q 001968 483 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE-HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (989)
Q Consensus 483 ~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~-~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~ 561 (989)
..+..++..++...+. .+++.++-..++++|-|+-.=+. -.++++..+..+ . ..++.|+..|..++..+...
T Consensus 22 ~~l~~ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~-~-----~~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 22 ISLESLLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL-Q-----KDDEEVKITALKALFDLLLT 94 (298)
T ss_pred chHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-H-----hCCHHHHHHHHHHHHHHHHH
Confidence 4555666665533332 35567765666678877765332 234455555444 2 23678999999999998887
Q ss_pred hhhcchhh---------HHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCC
Q 001968 562 LKAKLVPF---------IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED 615 (989)
Q Consensus 562 ~~~~l~p~---------~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~ 615 (989)
.+...... ...+++.+...+.... ++-+....||++.++-..-
T Consensus 95 ~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-----------~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 95 HGIDIFDSESDNDESVDSKSLLKILTKFLDSEN-----------PELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred cCchhccchhccCccchHhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHhcCC
Confidence 76444321 2345555555554221 2346667888888876643
No 152
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.93 E-value=1.5e+03 Score=31.26 Aligned_cols=98 Identities=9% Similarity=0.219 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHhhhc--CCCCH--HHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhc-
Q 001968 52 IVQVQFWCLQTLSEVVRVKY--TSMSS--EERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEY- 126 (989)
Q Consensus 52 ~~~vr~fa~~~L~~~I~~~w--~~l~~--~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~- 126 (989)
+.++++||.-.|+..-.+-. .+|+. -++..+|-. . .+... ....-||..+-.++..++....
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf-e-~im~~-----------s~~~eVrE~ILeCv~qmI~s~~~ 1216 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF-V-IVMRK-----------SNAVEIRELIIRCVSQMVLSRVN 1216 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH-H-HHHHh-----------cCchHHHHHHHHHHHHHHHHHHh
Confidence 46799999999887654422 22221 123344332 2 22222 1244688888888877755333
Q ss_pred --CCCChhhHHHHHHhhcC-CchhHHHHHHHHHHHHHHH
Q 001968 127 --PLIWSSVFVDFLPQLNK-GSMVIDMFCRVLNSLDDEL 162 (989)
Q Consensus 127 --p~~Wp~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Eev 162 (989)
-..|++.|.-+-..+.. ++........++..+..|.
T Consensus 1217 nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1217 NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 35999988877766554 3455666777777666654
No 153
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=32.73 E-value=1e+03 Score=29.21 Aligned_cols=215 Identities=16% Similarity=0.242 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHH-HHHHHhhHhhhhhccCchHHHHHHhhccc
Q 001968 460 EAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVY-LETVTRYMKFIQEHTQYIPVVLAAFLDER 538 (989)
Q Consensus 460 Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~-~~~lg~y~~~l~~~~~~L~~vl~~l~~~~ 538 (989)
+.++.+++.++..=....+-.....++.++.+++..+-+....-++++.+ +-+-.+++.-+.. ..-|+..+...+.
T Consensus 388 ~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~-- 464 (708)
T PF05804_consen 388 EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALK-- 464 (708)
T ss_pred HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHh--
Confidence 56787888887642221222233578888888774321111111222221 1123345544443 2446666665443
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHh---hhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCC
Q 001968 539 GIHHPNVHVSRRASYLFMRVVKLL---KAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED 615 (989)
Q Consensus 539 ~l~~~~~~v~~~A~~al~~l~~~~---~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~ 615 (989)
..++ .....+++++.+- +..+.+|+.+|+..+ ... ++.-.+.|++|++-....
T Consensus 465 ---~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v----~~~-------------~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 465 ---TRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIV----SSG-------------DSEEFVVECLGILANLTI 520 (708)
T ss_pred ---cccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHh----hcC-------------CcHHHHHHHHHHHHhccc
Confidence 2222 1234566666543 234456666665432 211 234678999997765532
Q ss_pred CChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHH--HHHHH
Q 001968 616 VPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF--KQTLD 693 (989)
Q Consensus 616 ~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~--~~~~~ 693 (989)
+...-..+++. ..+++-+...+....+ ++| . +..++.++|+++. .+.+...+ ..+++
T Consensus 521 -~~ld~~~ll~~--~~llp~L~~~L~~g~~---~dD--l---~LE~Vi~~gtla~----------d~~~A~lL~~sgli~ 579 (708)
T PF05804_consen 521 -PDLDWAQLLQE--YNLLPWLKDLLKPGAS---EDD--L---LLEVVILLGTLAS----------DPECAPLLAKSGLIP 579 (708)
T ss_pred -CCcCHHHHHHh--CCHHHHHHHHhCCCCC---ChH--H---HHHHHHHHHHHHC----------CHHHHHHHHhCChHH
Confidence 33344455543 1334444444432211 111 2 2234567777762 11233333 36677
Q ss_pred HHHHHhhcCCCChhHhHHHHHHHHHHHhh
Q 001968 694 VLLQILVVFPKVEPLRCKVTSFIHRMVDT 722 (989)
Q Consensus 694 ~~~~~l~~~~~~~~i~e~~~~~~~~~~~~ 722 (989)
.+..++.....+.++.-.+..+|.+++..
T Consensus 580 ~Li~LL~~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 580 TLIELLNAKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHcC
Confidence 77778877777888777777777777543
No 154
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=32.61 E-value=3.1e+02 Score=23.47 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=49.2
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHH
Q 001968 41 RICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120 (989)
Q Consensus 41 ~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~ 120 (989)
+-+..-+.. +.+-+|-.|+.+|++.|.++- .+......+-.-+++.+. .+.+||-=...+.++.
T Consensus 6 ~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-------------d~DsyVYL~aI~~L~~ 69 (92)
T PF10363_consen 6 QEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-------------DEDSYVYLNAIKGLAA 69 (92)
T ss_pred HHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-------------CCCchHHHHHHHHHHH
Confidence 334444443 346799999999999999864 344444444444443333 3467888888888888
Q ss_pred HHHhhcCCCChhhHHHHHHhh
Q 001968 121 LIYFEYPLIWSSVFVDFLPQL 141 (989)
Q Consensus 121 l~~~~~p~~Wp~~~~~l~~~~ 141 (989)
++- .+|+ ..++.++...
T Consensus 70 La~-~~p~---~vl~~L~~~y 86 (92)
T PF10363_consen 70 LAD-RHPD---EVLPILLDEY 86 (92)
T ss_pred HHH-HChH---HHHHHHHHHH
Confidence 853 3332 2555555443
No 155
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=32.52 E-value=2.4e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhh
Q 001968 539 GIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA 582 (989)
Q Consensus 539 ~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 582 (989)
-++++.+.||.++-..+.+++++-. .-....+.++..+...+.
T Consensus 11 ~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~ 53 (92)
T PF10363_consen 11 DLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLK 53 (92)
T ss_pred HccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcC
Confidence 4566788899999999999999866 223455666666665554
No 156
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.08 E-value=1e+03 Score=28.99 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=46.5
Q ss_pred ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhH
Q 001968 523 HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQ 578 (989)
Q Consensus 523 ~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 578 (989)
.|+.+.+.++.+.. ++.++++-||+-|.-++..|-+. ..+|.|..++++..+.
T Consensus 128 E~ELlepl~p~Ira--cleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 128 EPELLEPLMPSIRA--CLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFL 180 (948)
T ss_pred cHHHhhhhHHHHHH--HHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHH
Confidence 68999999999998 99999999999999999988877 5778899999977663
No 157
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.45 E-value=4.4e+02 Score=24.66 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc----CCchHHHHHHHHHHHHHHhhhcCCCCHH--
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL----CNIVQVQFWCLQTLSEVVRVKYTSMSSE-- 77 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~----~~~~~vr~fa~~~L~~~I~~~w~~l~~~-- 77 (989)
+.+.|.-+-+++ ...+.-.-+.+.+..+...+.+-.-|...|.. ++++.+..+|+.+|+..+++.-..+-.+
T Consensus 2 ~~~~IekATse~--l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia 79 (141)
T cd03565 2 VGQLIEKATDGS--LQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVA 79 (141)
T ss_pred HhHHHHHHcCcC--CCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 456777777764 23345666778888887776666666655543 4578899999999999999754332221
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHH
Q 001968 78 ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (989)
Q Consensus 78 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l 121 (989)
.+..+.+.|...+... ...+.-|++|+..++-.-
T Consensus 80 sk~Fl~e~L~~~i~~~----------~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 80 KKDFIKDVLVKLINPK----------NNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHhhhHHHHHHHccc----------CCCcHHHHHHHHHHHHHH
Confidence 1222222122222211 124567898888777665
No 158
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=29.70 E-value=7.1e+02 Score=26.49 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=28.8
Q ss_pred hhhhcc-CchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc
Q 001968 519 FIQEHT-QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 566 (989)
Q Consensus 519 ~l~~~~-~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l 566 (989)
++..|. -.+|++|. .+.+..+.++.++|.++..|.+.+....
T Consensus 112 ~i~~~~~liiP~iL~------llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 112 WISQHWPLIIPPILN------LLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred hHHHhhhHHHhhHHH------HhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 455442 23444444 4445678999999999999999887544
No 159
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=29.51 E-value=37 Score=23.31 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=16.8
Q ss_pred CCCCCCchhhhhHHHHHHHHH
Q 001968 539 GIHHPNVHVSRRASYLFMRVV 559 (989)
Q Consensus 539 ~l~~~~~~v~~~A~~al~~l~ 559 (989)
.+.++++.++..|+.+|.+++
T Consensus 20 ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 20 LLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHcCCCHHHHHHHHHHHHHHc
Confidence 334567899999999999886
No 160
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.38 E-value=1.1e+03 Score=28.76 Aligned_cols=198 Identities=16% Similarity=0.224 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHHHhhhcch-hhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHH
Q 001968 548 SRRASYLFMRVVKLLKAKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS 626 (989)
Q Consensus 548 ~~~A~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~ 626 (989)
|+.|+.++..|++..|..++ .-++++++.++.--. .++..-++.|.+..+++..+ .
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~-------------D~E~ik~~LdTl~il~~~dd-~--------- 96 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM-------------DPEIIKYALDTLLILTSHDD-S--------- 96 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC-------------CHHHHHHHHHHHHHHHhcCc-c---------
Confidence 88999999999999998775 457888777653211 12445678899888887743 1
Q ss_pred HhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCCh
Q 001968 627 SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVE 706 (989)
Q Consensus 627 ~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 706 (989)
|... . +..... ..-.+++.+ |-.. ++-+..++..++. .+.
T Consensus 97 ----~~v~------d---------ds~qsd---d~g~~iae~---fik~-------------qd~I~lll~~~e~--~DF 136 (970)
T KOG0946|consen 97 ----PEVM------D---------DSTQSD---DLGLWIAEQ---FIKN-------------QDNITLLLQSLEE--FDF 136 (970)
T ss_pred ----hhhc------c---------cchhhh---HHHHHHHHH---HHcC-------------chhHHHHHHHHHh--hch
Confidence 1110 0 000000 001111111 1000 0112223333332 245
Q ss_pred hHhHHHHHHHHHHHhhhccccc------Cc-hHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH
Q 001968 707 PLRCKVTSFIHRMVDTLGASVF------PY-LPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGR 779 (989)
Q Consensus 707 ~i~e~~~~~~~~~~~~l~~~~~------p~-l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~ 779 (989)
.||-++...+..+..+.|.++. |. +..+|..+-..-+.-+ .+.+.+++.++..-+. +...+ .|+..|++
T Consensus 137 ~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IR-Ne~iLlL~eL~k~n~~-IQKlV--AFENaFer 212 (970)
T KOG0946|consen 137 HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIR-NEAILLLSELVKDNSS-IQKLV--AFENAFER 212 (970)
T ss_pred hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhc-hhHHHHHHHHHccCch-HHHHH--HHHHHHHH
Confidence 6666777777777777665532 22 3444443333333333 5677778777764333 33322 37788888
Q ss_pred HHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001968 780 IFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLS 823 (989)
Q Consensus 780 ~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~ 823 (989)
.|.+|.+.+..+| .=+.++.+.++..+++++.+
T Consensus 213 LfsIIeeEGg~dG-----------gIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 213 LFSIIEEEGGLDG-----------GIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred HHHHHHhcCCCCC-----------cchHHHHHHHHHHHHhhCcc
Confidence 9999987532211 12677889999999998743
No 161
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.07 E-value=6e+02 Score=36.72 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=77.7
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHH----HhhhcccccCchHHHHH---HHHccCChhHHHHHHHHH
Q 001968 682 PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRM----VDTLGASVFPYLPKALE---QLLAESEPKEMAGFLVLL 754 (989)
Q Consensus 682 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~----~~~l~~~~~p~l~~l~~---~ll~~~~~~~~~~~L~l~ 754 (989)
|++..+..++++.....-+. -....-++..|+.+ -..+-.++.|.+|.+++ +|+..+....+.+..
T Consensus 629 phv~~Ii~~smela~~a~ep----lnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLf--- 701 (3550)
T KOG0889|consen 629 PHVHDIISTSMELATTAPEP----LNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLF--- 701 (3550)
T ss_pred cchhHHHHHHHHHHhcCCcc----hhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHH---
Confidence 45566677776665543221 12222222222222 23344567888888766 455556544333321
Q ss_pred HHHHHHhhhh---hHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCC
Q 001968 755 NQLICKFNTL---VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKS 831 (989)
Q Consensus 755 ~~li~~~~~~---~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~ 831 (989)
--++....-. ..|+++-++.|++ ..+++ .|+++--.++-+.-.+.+.-+..+ .+--
T Consensus 702 vELclTvPvRLS~Llpylp~LM~PLv----~aLkg----------------s~~lvsQgLRtlelcvDnltPefL-~~~m 760 (3550)
T KOG0889|consen 702 VELCLTLPVRLSSLLPYLPLLMKPLV----FALKG----------------SPELVSQGLRTLELCVDNLTPEFL-DPIM 760 (3550)
T ss_pred HHHHHhhhHHHHHhhhhhhhhhhHHH----HHhcC----------------CHHHHHHHHhHHHHHHhcCChHhh-hHHH
Confidence 1122222221 4566665565554 33443 245554445555444444433333 2222
Q ss_pred cCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHH
Q 001968 832 RGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK 867 (989)
Q Consensus 832 ~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~ 867 (989)
.++-+.+++++-......++......|++++.++-.
T Consensus 761 epv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG 796 (3550)
T KOG0889|consen 761 EPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGG 796 (3550)
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC
Confidence 444555555555444344467778888888877543
No 162
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=28.29 E-value=4e+02 Score=33.03 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=83.8
Q ss_pred hhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcC
Q 001968 706 EPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIP 785 (989)
Q Consensus 706 ~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~ 785 (989)
..+.-.+-.++..+...++..+.+|.-.+.+.++..+.... +.....+-.+++.+++.. -+..+...+..++.
T Consensus 309 ~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk-~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 309 INVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKK-SELRDALLKALDAILNST------PLSKMSEAILEALK 381 (815)
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhcc-HHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhc
Confidence 33444466677777777887777877777666666553222 333334444555555421 12233444455555
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHH
Q 001968 786 RDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRL 865 (989)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~ 865 (989)
. -.|-++.....++.+.+....+.. .. +..+..+...++... ...+.+++++|+..+.-+
T Consensus 382 ~---------------knp~~k~~~~~~l~r~~~~~~~~~---~~-~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 382 G---------------KNPQIKGECLLLLDRKLRKLGPKT---VE-KETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAV 441 (815)
T ss_pred C---------------CChhhHHHHHHHHHHHHhhcCCcC---cc-hhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHH
Confidence 4 236677777888888888764321 11 234555555554444 557999999999999998
Q ss_pred HHHhhC
Q 001968 866 IKDWCA 871 (989)
Q Consensus 866 i~~~~~ 871 (989)
....|.
T Consensus 442 ~k~~Ge 447 (815)
T KOG1820|consen 442 MKVHGE 447 (815)
T ss_pred HHHhhH
Confidence 888764
No 163
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.26 E-value=8.5e+02 Score=26.96 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcC
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYT 72 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~ 72 (989)
-++++|.-+-+|. ...+.-.-+..+|..+.++|+.-.-|+..+.. ..+++|..-|+.++...+.+.-.
T Consensus 8 ~~e~~v~KAT~e~--nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~ 78 (462)
T KOG2199|consen 8 PFEQDVEKATDEK--NTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGK 78 (462)
T ss_pred hHHHHHHHhcCcc--cccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcch
Confidence 4788898898886 34556777889999999999988888887764 46689999999999988776543
No 164
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.91 E-value=1.8e+03 Score=30.57 Aligned_cols=119 Identities=9% Similarity=0.150 Sum_probs=68.5
Q ss_pred ChhHHHH----HHHHHHHhcccCchhhhhcccccHHH---HH-HHHHhCCCCCCCCchHHHHHHHHHHhhHh-hhhhc--
Q 001968 455 NVEEVEA----ALTLLYALGESMSEEAMRTGAGHLSE---LV-PMLLQTKLPCHSNRLVALVYLETVTRYMK-FIQEH-- 523 (989)
Q Consensus 455 ~w~~~Ea----~l~~l~~i~e~~~~~~~~~~~~~l~~---ll-~~ll~~~~~~~~~~~v~~~~~~~lg~y~~-~l~~~-- 523 (989)
.|++++. .+|++..+.|....+. ..-.-.-.. ++ ..+. ..+.+++..+++..++.+.+.+- |+...
T Consensus 1098 S~eEl~~~~~pr~FsLqKLveIa~~Nm-~Rirl~W~~iW~~l~~hf~--~vg~~~n~~va~fAidsLrQLs~kfle~eEL 1174 (1780)
T PLN03076 1098 SMEELRSPSDPRVFSLTKIVEIAHYNM-NRIRLVWSSIWHVLSDFFV--TIGCSENLSIAIFAMDSLRQLSMKFLEREEL 1174 (1780)
T ss_pred hHHHHccCCCCchhHHHHHHHHHHhcc-cchheehHhHHHHHHHHHH--HhcCCcchhHHHHHHHHHHHHHHHhcchhhh
Confidence 4555533 5888888888765431 111001111 11 1222 22334444455555555666554 44331
Q ss_pred ------cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhh
Q 001968 524 ------TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTI 581 (989)
Q Consensus 524 ------~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l 581 (989)
.++|.+... ++. +..+..|+.+....+..+...+...+..-+..++..+....
T Consensus 1175 ~~f~FQkefLkPfe~-im~----~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa 1233 (1780)
T PLN03076 1175 ANYNFQNEFMKPFVI-VMR----KSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAA 1233 (1780)
T ss_pred hchhHHHHHHHHHHH-HHH----hcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 245555443 332 23456899999999999999999999888888887776554
No 165
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.48 E-value=1.3e+03 Score=28.37 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=35.5
Q ss_pred HHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc-hhhHHHHHHHhHhhhh
Q 001968 528 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL-VPFIENILQSLQDTIA 582 (989)
Q Consensus 528 ~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l-~p~~~~il~~l~~~l~ 582 (989)
|.-+..+.+ -+++..+.+|..|.+.+..++++|...= .--++.+...+..++.
T Consensus 165 P~gIS~lmd--lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 165 PMGISKLMD--LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred chhHHHHHH--HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 333444444 5566677899999999999999997521 2234556666767765
No 166
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=26.35 E-value=5.8e+02 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHH
Q 001968 748 AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780 (989)
Q Consensus 748 ~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~ 780 (989)
...+..+-.+.+..|..+.++++++++.++..+
T Consensus 105 ~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 105 TAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred HHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHH
Confidence 445555555555566667888888888776555
No 167
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.97 E-value=5.2e+02 Score=23.76 Aligned_cols=133 Identities=18% Similarity=0.231 Sum_probs=68.2
Q ss_pred hHhHHHHHHHHHHHhhh-cccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh---h---------hHHHHHHhH
Q 001968 707 PLRCKVTSFIHRMVDTL-GASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNT---L---------VHDILDEVF 773 (989)
Q Consensus 707 ~i~e~~~~~~~~~~~~l-~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~---~---------~~~~l~~~~ 773 (989)
.|+.+++.++..++..- .+.-..+++.++..+-. +......++.++..+...+++ . +...+...+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 35667777777775443 33333455565554333 233334566777777776654 0 233333344
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChh
Q 001968 774 PAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYL 853 (989)
Q Consensus 774 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~ 853 (989)
+.+++.....++... + ...+++....++.+.+.+.-.....+.. .++++.++..+ +++.
T Consensus 81 ~~i~~~l~~~l~~~~---------~--~~~~~~~~~~L~~l~s~i~~~~~~~i~~---~~~l~~~~~~l-------~~~~ 139 (148)
T PF08389_consen 81 PDILEILSQILSQSS---------S--EANEELVKAALKCLKSWISWIPIELIIN---SNLLNLIFQLL-------QSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHHC---------H--CCHHHHHHHHHHHHHHHTTTS-HHHHHS---SSHHHHHHHHT-------TSCC
T ss_pred HHHHHHHHHHHHhhc---------c--ccHHHHHHHHHHHHHHHHHhCCHHHhcc---HHHHHHHHHHc-------CCHH
Confidence 444444444444310 0 0137788888888888877333233222 22455444433 3444
Q ss_pred hhhHHHHHH
Q 001968 854 VRKACVQIF 862 (989)
Q Consensus 854 ~~k~a~~~l 862 (989)
.+..|++++
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 466666654
No 168
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.75 E-value=1.1e+03 Score=27.46 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=53.7
Q ss_pred chHHHHHHhhcc-cCCC---CCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchh
Q 001968 526 YIPVVLAAFLDE-RGIH---HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGS 601 (989)
Q Consensus 526 ~L~~vl~~l~~~-~~l~---~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~ 601 (989)
.+|.++..+++. .|.. +.+=.+|+-|+.++..+|++....-...-+.|...+...+..... .-.
T Consensus 289 L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~------------~~s 356 (576)
T KOG2549|consen 289 LVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKK------------PLS 356 (576)
T ss_pred HhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC------------Cch
Confidence 456666666652 1111 233458999999999999988765544555556666666543211 123
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHh
Q 001968 602 HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLD 642 (989)
Q Consensus 602 ~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~ 642 (989)
..|.++..+ +..+ - ..+..++-|-+..+...++.
T Consensus 357 t~YGai~gL-~~lg--~----~~I~~~ilp~L~~~~~~l~~ 390 (576)
T KOG2549|consen 357 THYGAIAGL-SELG--H----EVIRTVILPNLKEYNERLQS 390 (576)
T ss_pred hhhhHHHHH-HHhh--h----hhhhheeccchHHHHHHhhh
Confidence 456665544 3321 1 23445555555555555443
No 169
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.51 E-value=2.8e+02 Score=26.88 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 803 VQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 803 ~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
=-|+|+..|.++.+++..++..+ -+..++..+..+..+ +.+++-.|...+.+++...
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~--------~~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRI--------DISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---------HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhC
Confidence 35899999999999999775433 133456666666634 8899989999999986543
No 170
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=25.35 E-value=2.9e+02 Score=26.56 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=28.2
Q ss_pred hHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC
Q 001968 707 PLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (989)
Q Consensus 707 ~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~ 742 (989)
.-...+..++..++.++|....||+|.+++.++...
T Consensus 102 ~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 102 SHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred HHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHH
Confidence 334456777777788899889999999999887754
No 171
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.93 E-value=4.7e+02 Score=29.12 Aligned_cols=69 Identities=19% Similarity=0.096 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC-Cc--hHHHHHHHHHHHHHHhhhcCCC
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NI--VQVQFWCLQTLSEVVRVKYTSM 74 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~--~~vr~fa~~~L~~~I~~~w~~l 74 (989)
++-=+.-+-||+ .+.+..+..+-+++++.+.|++-.++..+|... ++ ..--..|+.+|+..+++.-...
T Consensus 9 le~wlnrATdp~--~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekf 80 (594)
T KOG1086|consen 9 LEYWLNRATDPS--NDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKF 80 (594)
T ss_pred HHHHHHhccCcc--chHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHH
Confidence 555566678886 467777778999999999999988888888653 22 3456778888888888654443
No 172
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=24.91 E-value=9e+02 Score=26.13 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=26.5
Q ss_pred HHHhcCCC--C----CCCHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhhc
Q 001968 937 FVTKGFPS--A----HCPPDLAEQYCQKLQG-NDIKALKSFYQSLIEKLRVQQ 982 (989)
Q Consensus 937 ~~~~~~P~--~----~~~~~~~~~f~~~l~~-~~~~~f~~~~~~f~~~~r~~~ 982 (989)
++-..||= . .++++++...+.+..+ .-+|.. ..-|.++.++=|..
T Consensus 248 lLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~lrrDm-SLnRRl~~WLlG~~ 299 (307)
T PF04118_consen 248 LLLSHFPLDSPVLQSLLSPEDKELLVMAALKVVLRRDM-SLNRRLWNWLLGPE 299 (307)
T ss_pred HHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHHhHhhh-hHHHHHHHHHCCCC
Confidence 44457772 2 2789999999988765 111111 33456666666643
No 173
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=24.64 E-value=1.1e+02 Score=26.89 Aligned_cols=57 Identities=9% Similarity=0.128 Sum_probs=46.9
Q ss_pred chHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhc-chhhHHHHHHHhHhhhhcc
Q 001968 526 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK-LVPFIENILQSLQDTIARF 584 (989)
Q Consensus 526 ~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~ 584 (989)
+.+.++.++.. +|.|=.+.||.-|...|.-+.+.|+.. +..+...+++.+..++...
T Consensus 8 ~~~~l~~~i~s--AMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 8 FFPLLMLYISS--AMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHH--HHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 46667777776 888888899999999999999999988 4568888888888888643
No 174
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=23.15 E-value=3.4e+02 Score=26.57 Aligned_cols=75 Identities=11% Similarity=0.177 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHhhccccc-ccccc-ccccccHHHHHHHHHhcCCChhHHhHHHHHHHHH
Q 001968 188 CVEQIVRAWYDIVSMYR--SSDFEVCTGVLDCMRRYISW-IDINL-IANDAFIPLLFELILADGLPEQFRGAAVGCVLAV 263 (989)
Q Consensus 188 ~~~~i~~~~~~iL~~~~--~~~~~l~~~~L~~l~~~i~w-i~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i 263 (989)
....+++.+..+..... ..+..+...+++|+++.+.- ..... +.+++.+..+..++.. ++..+|..|++.|..+
T Consensus 108 G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s--~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 108 GLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS--PNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T--TSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
Confidence 35555554444433221 24567778899999887762 22233 3457788888888863 6789999999988766
Q ss_pred H
Q 001968 264 V 264 (989)
Q Consensus 264 ~ 264 (989)
+
T Consensus 186 c 186 (187)
T PF06371_consen 186 C 186 (187)
T ss_dssp H
T ss_pred H
Confidence 4
No 175
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=23.02 E-value=1e+03 Score=26.07 Aligned_cols=181 Identities=11% Similarity=0.116 Sum_probs=81.3
Q ss_pred HHHHHHHHhhhh-hHHHHHHhHHHHHHHHHhhcCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001968 753 LLNQLICKFNTL-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGT---------NTEEIREVQELQRTLYTFLHVIATHDL 822 (989)
Q Consensus 753 l~~~li~~~~~~-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~---------~~~~~~~~pd~~~~~~~ll~~~~~~~~ 822 (989)
+++.++..|-+. ...+|..++.+++..++. .....-.+|.. ..++....+++++.....+..++..-
T Consensus 82 laTK~m~~y~k~~G~~YL~~~L~p~I~~Ii~--~~~~~EiDP~ki~~~~~~~i~~~~a~~~~e~~e~~i~~L~~~~~~~- 158 (333)
T cd05135 82 LASKSMEQFMKVVGMPHLHEPLLPEISKPFE--EKKYIELDPCKIDLNRRRRISFKGAVSEEEVRESSLEMLQGYLSSI- 158 (333)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcccccCHHHcccccccccccccccCcHHHHHHHHHHHHHHHHHH-
Confidence 455555555443 456888888888887654 11111001100 00111134566666555554443322
Q ss_pred CccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHH-HhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccC
Q 001968 823 SSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK-DWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLD 901 (989)
Q Consensus 823 ~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (989)
++.|..++ . .-|...+..++.+.+.+. .+.+....+........|+.-+|.-.+ .+..
T Consensus 159 ------------~~~I~~S~-----~-~~P~~lR~i~~~l~~~v~~kFp~~~~~~~~~~~Vg~fiFLRFi~PA---IvsP 217 (333)
T cd05135 159 ------------TDAIVGSV-----S-QCPPVMRLTFKQLHKRVEERFPEAENQDVKYLAISGFLFLRFFAPA---ILTP 217 (333)
T ss_pred ------------HHHHHhhH-----H-hCCHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHHHhccc---cCCc
Confidence 22233333 1 223333444444444443 343211101112344566666654211 1122
Q ss_pred CCCCcccch----hhHhHHHHHHHHHHHHH---HHh---HHHHHHHHHhcCCCCCCCHHHHHHHHHHhcc
Q 001968 902 KSFEFGDAN----TLVLFGEIVLAQKVMYE---KFG---NDFLVHFVTKGFPSAHCPPDLAEQYCQKLQG 961 (989)
Q Consensus 902 ~~f~~~d~~----~~~~~~ei~~~l~~~~~---~~~---~~~l~~~~~~~~P~~~~~~~~~~~f~~~l~~ 961 (989)
..|++.+.. .+--+..|+.+++.+.. .+| +.|+.. +++++- -.-+...+|+..+..
T Consensus 218 ~~f~l~~~~~~~~~rR~L~lIAKvLQnlAN~~~~f~~~KE~~M~p-ln~Fi~---~~~~~v~~FL~~l~~ 283 (333)
T cd05135 218 KLFQLREQHADPRTSRTLLLLAKAVQSIGNLGQQLGQGKEQWMAP-LHPFIR---QSVARVRDFLDRLID 283 (333)
T ss_pred cccCccCCCCCHHHHHHHHHHHHHHHHHHccCCcCCCCCchHHHH-HHHHHH---HHHHHHHHHHHHHcC
Confidence 455554332 23455677777777665 234 235532 233331 234556677777755
No 176
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=22.77 E-value=2.9e+02 Score=22.62 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHhccCCch----HHHHHHHHHHHHH----HhhhcCCCCHHHHHHHHHHHHHHHHh
Q 001968 45 EKLSLCNIV----QVQFWCLQTLSEV----VRVKYTSMSSEERNLIRESVFSMVCC 92 (989)
Q Consensus 45 ~lL~~~~~~----~vr~fa~~~L~~~----I~~~w~~l~~~~~~~lr~~ll~~l~~ 92 (989)
++|....++ .|+.|++-.--.| +.++|+..-++.++++|..+ ..+..
T Consensus 17 ELL~Ge~~~e~~EkVk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li-~~Ik~ 71 (82)
T PF10835_consen 17 ELLLGETSPEMKEKVKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELI-EEIKQ 71 (82)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHH-HHHHH
Confidence 455444443 5888887554444 45799999999999999754 44444
No 177
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=9.5e+02 Score=29.65 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHH---HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCC
Q 001968 711 KVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM---AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRD 787 (989)
Q Consensus 711 ~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~---~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~ 787 (989)
++-.++.+.++..|+=+..|...++..++...+.++. .+-+..+|.++........+++ ..++..+..+...+
T Consensus 825 kVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~----~ev~~~Il~l~~~d 900 (982)
T KOG4653|consen 825 KVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF----HEVLQLILSLETTD 900 (982)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHccC
Confidence 4778888999999998889999999888887653321 2334555666554333233332 33333444444431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHH
Q 001968 788 AFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK 867 (989)
Q Consensus 788 ~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~ 867 (989)
..+-+||+...++..++......++ + --+.++-.....+.+..+.|+|..+...|...+.++-.
T Consensus 901 --------------~s~~vRRaAv~li~~lL~~tg~dlL-p-ilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 901 --------------GSVLVRRAAVHLLAELLNGTGEDLL-P-ILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred --------------CchhhHHHHHHHHHHHHhccchhhH-H-HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 4567899999999988875432222 1 00111122344555555688888888888877777766
Q ss_pred HhhC
Q 001968 868 DWCA 871 (989)
Q Consensus 868 ~~~~ 871 (989)
...+
T Consensus 965 ~l~n 968 (982)
T KOG4653|consen 965 ALEN 968 (982)
T ss_pred HHHh
Confidence 6543
No 178
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=22.72 E-value=1.1e+03 Score=26.28 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=17.9
Q ss_pred CChhhhhHHHHHHHHHHHHhh
Q 001968 850 KDYLVRKACVQIFIRLIKDWC 870 (989)
Q Consensus 850 ~~~~~~k~a~~~l~~~i~~~~ 870 (989)
.++.+++.|..++..+++...
T Consensus 270 e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 270 EEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred CCcchhHHHHHHHHHHHHccc
Confidence 377889999999999998875
No 179
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.36 E-value=1.5e+03 Score=27.87 Aligned_cols=97 Identities=11% Similarity=0.190 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcc---------cccCchHHHHHHHHccCCh---hHHHHHH-HH
Q 001968 687 MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGA---------SVFPYLPKALEQLLAESEP---KEMAGFL-VL 753 (989)
Q Consensus 687 ~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~---------~~~p~l~~l~~~ll~~~~~---~~~~~~L-~l 753 (989)
....+++.+.+.++ .....+..++-.++.++...-++ +..||+..++..+.++++. .+ .+|+ ..
T Consensus 495 ~lm~~~p~li~~L~--a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~E-neylmKa 571 (960)
T KOG1992|consen 495 HLMALLPRLIRFLE--AESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAE-NEYLMKA 571 (960)
T ss_pred HHHHHHHHHHHhcc--CcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccc-cHHHHHH
Confidence 34445555554443 22445555555556555433322 3568888888888876643 23 3332 33
Q ss_pred HHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCC
Q 001968 754 LNQLICKFNTLVHDILDEVFPAIAGRIFNIIPR 786 (989)
Q Consensus 754 ~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~ 786 (989)
+-.++..-.+...|..+.++..+.+-+..+-++
T Consensus 572 ImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KN 604 (960)
T KOG1992|consen 572 IMRIISILQSAIIPHAPELLRQLTEIVEEVSKN 604 (960)
T ss_pred HHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcC
Confidence 333333334445555566666665555555554
No 180
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.89 E-value=4.1e+02 Score=29.23 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 512 TVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 512 ~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
.|-..|+-+...|+-=..+|.++.. .+.+.+|.|...|..++-.++..|++.+.
T Consensus 28 ~IlDvCD~v~~~~~~~kd~lk~i~K--Rln~~dphV~L~AlTLlda~~~NCg~~~r 81 (462)
T KOG2199|consen 28 LILDVCDKVGSDPDGGKDCLKAIMK--RLNHKDPHVVLQALTLLDACVANCGKRFR 81 (462)
T ss_pred HHHHHHHhhcCCCcccHHHHHHHHH--HhcCCCcchHHHHHHHHHHHHHhcchHHH
Confidence 4555566666677766777777775 77788899999999999999999998763
No 181
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=20.01 E-value=1.4e+03 Score=26.43 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhc-----CCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 001968 22 LKSQAVNFCQQIKE-----TPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVC 91 (989)
Q Consensus 22 ~r~~A~~~L~~~q~-----~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~ 91 (989)
+.+.|++.-+.+++ -++-|..+..++...+..++|.-|+..|...|++...... ..|...+..+.
T Consensus 7 R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-----~~R~~fF~~I~ 76 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-----LMRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHHHh
Confidence 44444544444444 3347999999998877789999999999999998765432 34444554444
Done!