Query 001968
Match_columns 989
No_of_seqs 278 out of 1549
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 100.0 7E-120 2E-124 1121.8 90.9 937 2-981 6-978 (980)
2 4hat_C Exportin-1; heat repeat 100.0 2.2E-88 7.4E-93 839.0 73.6 906 3-984 17-1010(1023)
3 3gjx_A Exportin-1; transport, 100.0 8.8E-87 3E-91 817.0 65.1 909 3-985 29-1031(1073)
4 2x1g_F Cadmus; transport prote 100.0 2.3E-79 8E-84 778.1 74.5 897 2-983 7-968 (971)
5 2x19_B Importin-13; nuclear tr 100.0 1.9E-77 6.4E-82 761.6 78.6 888 3-984 25-957 (963)
6 3m1i_C Exportin-1; heat repeat 100.0 4E-77 1.4E-81 759.5 73.8 904 2-983 16-1009(1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 4.8E-60 1.6E-64 602.7 63.9 600 2-638 11-682 (1204)
8 4fdd_A Transportin-1; heat rep 100.0 1.8E-36 6.1E-41 379.1 66.6 709 2-869 13-786 (852)
9 1wa5_C Importin alpha RE-expor 100.0 1.7E-36 5.7E-41 382.8 58.1 729 2-869 5-793 (960)
10 2bpt_A Importin beta-1 subunit 100.0 3.1E-34 1.1E-38 360.8 64.9 707 3-870 5-766 (861)
11 1qgr_A Protein (importin beta 100.0 4E-30 1.4E-34 324.0 70.3 707 3-871 2-778 (876)
12 1ibr_B P95, importin beta-1 su 99.9 2.2E-22 7.7E-27 233.3 33.4 420 3-540 2-460 (462)
13 1w9c_A CRM1 protein, exportin 99.9 1.2E-20 3.9E-25 195.7 18.5 232 729-983 69-321 (321)
14 1u6g_C TIP120 protein, CAND1; 99.8 6.5E-16 2.2E-20 200.8 47.7 669 3-869 7-723 (1230)
15 4fdd_A Transportin-1; heat rep 99.7 1.2E-13 4.2E-18 172.3 55.2 346 454-871 333-703 (852)
16 1qgr_A Protein (importin beta 99.7 1.5E-13 5.2E-18 172.6 39.5 353 453-871 339-726 (876)
17 2bpt_A Importin beta-1 subunit 99.5 1.3E-09 4.5E-14 136.3 59.0 373 373-821 403-813 (861)
18 1u6g_C TIP120 protein, CAND1; 99.2 3.9E-09 1.3E-13 137.1 35.7 573 198-870 10-682 (1230)
19 1b3u_A Protein (protein phosph 99.2 1.8E-08 6.3E-13 119.9 38.0 520 205-865 59-585 (588)
20 1b3u_A Protein (protein phosph 99.1 4.8E-08 1.6E-12 116.2 33.8 445 19-566 100-554 (588)
21 1ibr_B P95, importin beta-1 su 98.2 4.8E-05 1.6E-09 87.0 20.4 284 455-776 143-456 (462)
22 1wa5_C Importin alpha RE-expor 98.2 0.0004 1.4E-08 87.3 29.2 305 436-770 452-803 (960)
23 2x1g_F Cadmus; transport prote 98.1 0.012 3.9E-07 74.2 41.4 189 660-872 525-727 (971)
24 3ibv_A Exportin-T; karyopherin 98.1 0.0096 3.3E-07 73.9 38.0 205 543-770 713-935 (980)
25 2vgl_B AP-2 complex subunit be 98.0 0.0055 1.9E-07 72.1 32.5 437 18-576 61-509 (591)
26 2qk1_A Protein STU2; STU2P, XM 97.9 5.5E-05 1.9E-09 78.0 11.9 164 453-632 27-196 (249)
27 2qk2_A LP04448P; mini spindles 97.5 0.00016 5.6E-09 74.5 8.5 157 453-634 26-183 (242)
28 2jdq_A Importin alpha-1 subuni 97.5 0.009 3.1E-07 67.6 23.9 366 128-564 13-394 (450)
29 2x19_B Importin-13; nuclear tr 97.5 0.015 5.3E-07 73.0 28.2 357 454-866 501-893 (963)
30 2qk2_A LP04448P; mini spindles 97.5 0.0024 8.2E-08 65.6 16.5 164 526-733 53-218 (242)
31 1w63_A Adapter-related protein 97.4 0.17 5.7E-06 59.6 33.7 440 19-575 83-554 (618)
32 2qk1_A Protein STU2; STU2P, XM 97.4 0.0017 5.8E-08 66.8 13.5 154 454-628 73-234 (249)
33 2jdq_A Importin alpha-1 subuni 97.3 0.014 4.8E-07 66.0 22.4 342 205-613 31-391 (450)
34 3m1i_C Exportin-1; heat repeat 97.3 0.66 2.3E-05 58.5 39.5 113 661-784 520-645 (1049)
35 2vgl_B AP-2 complex subunit be 97.2 0.13 4.3E-06 60.4 29.8 364 416-864 136-529 (591)
36 4b8j_A Importin subunit alpha- 97.2 0.013 4.3E-07 68.1 20.3 343 454-869 86-445 (528)
37 3tpo_A Importin subunit alpha- 97.2 0.083 2.8E-06 61.0 26.8 308 205-564 87-410 (529)
38 1wa5_B Importin alpha subunit; 97.1 0.03 1E-06 64.8 22.9 303 205-563 98-415 (530)
39 4b8j_A Importin subunit alpha- 97.1 0.028 9.7E-07 65.1 22.1 302 205-562 85-402 (528)
40 1wa5_B Importin alpha subunit; 97.1 0.087 3E-06 60.9 25.6 301 207-564 144-461 (530)
41 1w63_A Adapter-related protein 97.0 0.17 5.9E-06 59.5 27.6 249 440-738 108-359 (618)
42 2vgl_A Adaptor protein complex 96.9 0.073 2.5E-06 62.6 23.2 254 441-738 113-377 (621)
43 3ul1_B Importin subunit alpha- 96.8 0.083 2.8E-06 60.7 22.2 309 204-564 67-391 (510)
44 4hat_C Exportin-1; heat repeat 96.6 2.5 8.6E-05 52.4 51.1 315 525-871 447-789 (1023)
45 2vgl_A Adaptor protein complex 96.4 2.3 8E-05 49.7 35.7 124 18-160 86-216 (621)
46 2z6g_A B-catenin; FULL-length, 96.1 3.8 0.00013 49.5 39.8 212 18-267 162-391 (780)
47 2z6g_A B-catenin; FULL-length, 96.1 3.7 0.00013 49.6 31.5 219 5-265 118-348 (780)
48 4hxt_A De novo protein OR329; 95.9 0.33 1.1E-05 49.3 18.5 224 1-267 1-243 (252)
49 3ul1_B Importin subunit alpha- 95.4 4.3 0.00015 46.2 27.2 221 4-266 59-304 (510)
50 2z6h_A Catenin beta-1, beta-ca 94.8 8.3 0.00029 45.3 38.8 210 18-266 26-254 (644)
51 3tpo_A Importin subunit alpha- 94.3 9.2 0.00032 43.6 26.8 220 4-265 78-322 (529)
52 4hxt_A De novo protein OR329; 93.6 3 0.0001 41.8 18.4 186 41-265 5-199 (252)
53 2iw3_A Elongation factor 3A; a 93.5 1.7 5.7E-05 53.0 18.1 237 437-725 90-328 (986)
54 4db8_A Armadillo-repeat protei 93.4 1.4 4.8E-05 44.6 15.4 191 37-265 11-209 (252)
55 1oyz_A Hypothetical protein YI 93.2 8.4 0.00029 39.5 21.7 128 4-156 25-153 (280)
56 3ltm_A Alpha-REP4; protein eng 92.3 8.8 0.0003 37.3 19.7 183 4-266 21-204 (211)
57 3gjx_A Exportin-1; transport, 90.9 38 0.0013 41.9 44.7 296 543-871 491-815 (1073)
58 2iw3_A Elongation factor 3A; a 90.9 2 6.8E-05 52.3 14.3 247 549-870 70-327 (986)
59 3ltj_A Alpharep-4; protein eng 90.2 13 0.00046 35.6 20.2 180 4-263 16-196 (201)
60 4db8_A Armadillo-repeat protei 89.4 0.95 3.2E-05 45.9 8.8 97 454-562 108-211 (252)
61 4db6_A Armadillo repeat protei 89.0 2 7E-05 41.9 10.7 137 454-613 24-168 (210)
62 4db6_A Armadillo repeat protei 88.7 5.8 0.0002 38.5 13.9 132 416-562 27-169 (210)
63 3ltj_A Alpharep-4; protein eng 86.6 17 0.00057 34.9 15.6 81 452-559 24-104 (201)
64 2z6h_A Catenin beta-1, beta-ca 85.8 59 0.002 37.9 27.3 344 454-866 26-381 (644)
65 1xqr_A HSPBP1 protein; armadil 85.2 15 0.0005 38.2 15.0 185 2-223 28-238 (296)
66 3a6p_A Exportin-5; exportin-5, 85.2 26 0.0009 44.4 20.2 112 660-780 551-680 (1204)
67 1jdh_A Beta-catenin; beta-cate 84.1 60 0.002 36.4 38.6 210 18-266 29-257 (529)
68 3now_A UNC-45 protein, SD10334 82.0 92 0.0031 37.1 48.7 548 230-867 45-652 (810)
69 3u0r_A Apoptosis inhibitor 5; 81.0 19 0.00066 39.3 13.8 43 517-561 53-95 (507)
70 1oyz_A Hypothetical protein YI 79.4 46 0.0016 33.7 16.3 114 19-157 67-185 (280)
71 2of3_A ZYG-9; multifunctional 79.1 57 0.002 32.9 18.9 169 51-266 58-237 (266)
72 4ffb_C Protein STU2; tubulin f 78.7 19 0.00064 36.9 12.9 124 453-583 66-194 (278)
73 4atg_A TAF6; transcription, TF 77.5 24 0.00081 33.7 11.8 94 525-640 87-180 (196)
74 2db0_A 253AA long hypothetical 76.0 23 0.00079 33.2 10.6 164 417-613 48-211 (253)
75 1xqr_A HSPBP1 protein; armadil 72.2 93 0.0032 32.0 19.0 137 453-613 93-239 (296)
76 1te4_A Conserved protein MTH18 69.4 7.5 0.00026 34.5 6.1 77 454-557 54-130 (131)
77 3now_A UNC-45 protein, SD10334 69.3 1.9E+02 0.0065 34.4 43.4 150 690-867 536-694 (810)
78 2db0_A 253AA long hypothetical 68.7 29 0.00099 32.6 9.5 116 445-575 35-151 (253)
79 4ffb_C Protein STU2; tubulin f 68.1 20 0.0007 36.6 10.0 109 452-563 19-135 (278)
80 3b2a_A TON_1937, putative unch 67.5 98 0.0034 30.4 20.2 198 28-270 23-223 (265)
81 3tjz_B Coatomer subunit gamma; 66.2 12 0.00041 39.9 7.6 123 417-561 84-206 (355)
82 1vsy_4 Proteasome activator BL 63.5 2.4E+02 0.0083 33.5 19.2 51 527-582 337-390 (799)
83 3nmz_A APC variant protein; pr 62.4 1.4E+02 0.0047 32.9 15.8 59 205-265 254-316 (458)
84 1jdh_A Beta-catenin; beta-cate 62.3 1.9E+02 0.0067 32.0 22.8 204 18-265 113-339 (529)
85 1xm9_A Plakophilin 1; armadill 57.5 2.2E+02 0.0076 31.1 27.8 154 690-866 283-448 (457)
86 1xm9_A Plakophilin 1; armadill 56.0 2.3E+02 0.008 30.9 24.6 119 3-141 3-136 (457)
87 2of3_A ZYG-9; multifunctional 55.5 1.7E+02 0.006 29.3 15.5 186 543-770 58-247 (266)
88 3g2s_A C-terminal fragment of 49.2 79 0.0027 28.6 9.0 114 4-128 12-130 (149)
89 1x5b_A Signal transducing adap 48.5 72 0.0025 29.4 8.9 65 4-70 16-83 (163)
90 3b2a_A TON_1937, putative unch 46.7 63 0.0021 31.8 8.1 144 531-723 35-181 (265)
91 3zyq_A Hepatocyte growth facto 46.5 1E+02 0.0035 30.2 10.2 104 3-121 8-116 (226)
92 3oc3_A Helicase MOT1, MOT1; re 46.3 3.1E+02 0.011 30.9 14.3 145 40-222 173-327 (800)
93 1elk_A Target of MYB1; superhe 43.4 95 0.0032 28.4 8.8 66 3-70 16-85 (157)
94 3tjz_B Coatomer subunit gamma; 41.2 22 0.00076 37.7 4.6 72 500-582 115-186 (355)
95 1vsy_4 Proteasome activator BL 39.7 5.4E+02 0.019 30.5 31.9 73 419-493 357-432 (799)
96 3ldz_A STAM-1, signal transduc 37.8 1.2E+02 0.0041 27.0 8.4 65 4-70 6-73 (140)
97 1mhq_A ADP-ribosylation factor 37.4 2.3E+02 0.0079 25.5 12.3 114 4-127 2-119 (148)
98 3u0r_A Apoptosis inhibitor 5; 34.7 4.9E+02 0.017 28.5 14.5 235 663-961 50-295 (507)
99 3ltm_A Alpha-REP4; protein eng 32.0 3.2E+02 0.011 25.6 19.3 140 18-222 62-202 (211)
100 3g2s_A C-terminal fragment of 31.8 74 0.0025 28.8 5.9 52 513-566 32-83 (149)
101 1juq_A ADP-ribosylation factor 30.7 76 0.0026 29.5 5.9 51 515-567 36-86 (171)
102 1dvp_A HRS, hepatocyte growth 30.4 1.4E+02 0.0049 28.9 8.3 65 4-70 6-73 (220)
103 1x5b_A Signal transducing adap 30.2 1.3E+02 0.0045 27.6 7.4 50 515-566 38-87 (163)
104 1l6x_B Minimized B-domain of p 29.6 40 0.0014 21.5 2.4 18 941-960 14-31 (34)
105 3l6x_A Catenin delta-1; cateni 29.4 6.6E+02 0.023 28.4 23.1 103 4-123 50-163 (584)
106 1juq_A ADP-ribosylation factor 28.5 1.3E+02 0.0045 27.9 7.2 65 4-70 14-81 (171)
107 3ldz_A STAM-1, signal transduc 27.6 1E+02 0.0034 27.6 6.0 50 516-567 29-78 (140)
108 1mhq_A ADP-ribosylation factor 26.8 88 0.003 28.3 5.5 51 515-567 24-74 (148)
109 1w9c_A CRM1 protein, exportin 26.5 5.5E+02 0.019 26.4 18.5 125 684-815 113-248 (321)
110 3zyq_A Hepatocyte growth facto 26.1 3.2E+02 0.011 26.6 9.9 48 517-566 33-80 (226)
111 3nmw_A APC variant protein; AR 25.9 5.9E+02 0.02 26.6 18.3 257 2-309 47-333 (354)
112 1zda_A Mini protein A domain, 21.0 43 0.0015 21.9 1.5 18 941-960 19-36 (38)
113 3gs3_A Symplekin, LD45768P; he 20.1 2.7E+02 0.0093 27.7 8.1 70 483-559 49-118 (257)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=6.6e-120 Score=1121.80 Aligned_cols=937 Identities=25% Similarity=0.427 Sum_probs=777.6
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCC--chHHHHHHHHHHHHHHhhhcCCCCHH--
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCN--IVQVQFWCLQTLSEVVRVKYTSMSSE-- 77 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~--~~~vr~fa~~~L~~~I~~~w~~l~~~-- 77 (989)
+++++||+.+|+|+ +|++.|++|++||++||++|++|++|..+|..+. ++++||||+++|+++|+ .++++
T Consensus 6 ~~v~~Al~~~~~p~--sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~ 79 (980)
T 3ibv_A 6 QDVENAVEAALDPS--VGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhh
Confidence 48999999999985 6999999999999999999999999999998764 68999999999999999 69999
Q ss_pred --HHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-c-hhHHHHHH
Q 001968 78 --ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-S-MVIDMFCR 153 (989)
Q Consensus 78 --~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~-~-~~~~~~L~ 153 (989)
++..||+.|++++.+. + ...++++||||+|.+++.+++++||+.||++++++++.++++ . ...+.+|+
T Consensus 80 ~~~~~~lr~~ll~~l~~~---~-----~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~Lr 151 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKEL---S-----FLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLK 151 (980)
T ss_dssp HHHHHHHHHHHHHHHHHC---C-----STTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---c-----CCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHH
Confidence 9999999999999873 1 124689999999999999999999999999999999999864 3 46778999
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHhhccccccccccccc
Q 001968 154 VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYR-SSDFEVCTGVLDCMRRYISWIDINLIAN 232 (989)
Q Consensus 154 iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~-~~~~~l~~~~L~~l~~~i~wi~~~~~~~ 232 (989)
+|..|+||+.+.+++++++...|++.+|+.|+++|++.|++.|..+|..+. +.+++++..+|+|+++|++|+|++.+.+
T Consensus 152 iL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~ 231 (980)
T 3ibv_A 152 VLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN 231 (980)
T ss_dssp HHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC
T ss_pred HHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc
Confidence 999999999887777888888999999999999889999999999998764 3678899999999999999999999999
Q ss_pred cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccC-CcchHHHHHHHHHHHHHHHH
Q 001968 233 DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSE-DGESELVSKVAALLTGYAME 311 (989)
Q Consensus 233 ~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~-~~d~~~~~~~~~l~~~~~~~ 311 (989)
+++++.+++++. ++++|.+|++||++|++++++|++|.+++..+++.+++..+.. ++|.|+.+++|++++++|.+
T Consensus 232 ~~ll~~l~~~L~----~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 232 EPCMNLLYSFLQ----IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HHHHHHHHHHTT----SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcC----ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 999999999875 6999999999999999999999999999998888888877653 68899999999999999999
Q ss_pred HHHHHhhccc---hhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccC---CCChHHHhHhHHHHHHH
Q 001968 312 VLDCVKRLNA---ENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL---SPLKEEQRLHAGQILEV 385 (989)
Q Consensus 312 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~ll~~ 385 (989)
++.. ..... ++....+.+++..++++++.+++|++.+.+..+++||.+|+..+++. .++...+++++.+++++
T Consensus 308 l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~ 386 (980)
T 3ibv_A 308 LVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEA 386 (980)
T ss_dssp HHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 8887 43210 12233455788899999999999987665557999999999887642 34667889999999999
Q ss_pred HHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHH----HHHHHHHHhhcCCCCCChhHHHH
Q 001968 386 ILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQV----FIRNSLANAVTFSADRNVEEVEA 461 (989)
Q Consensus 386 l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~----~i~~~l~~~~~~~~~~~w~~~Ea 461 (989)
+++||+||++.+ |.+++|+||+++|.+||++++.+++.++.++|+.+++ ++.+.+.+.+++.++.+|+++||
T Consensus 387 li~k~~yp~d~~----~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~Ea 462 (980)
T 3ibv_A 387 IIKKMKYDESQE----WDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEF 462 (980)
T ss_dssp HHHTTSCCTTCC----CCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHccCCCccc----cccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 999999998864 3333345678899999999997777778889999999 77777777665334468999999
Q ss_pred HHHHHHHhcccCchhhhh--cccccHHH---HHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhc
Q 001968 462 ALTLLYALGESMSEEAMR--TGAGHLSE---LVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLD 536 (989)
Q Consensus 462 ~l~~l~~i~e~~~~~~~~--~~~~~l~~---ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~ 536 (989)
+||+++++||+++..... ..+..+|+ ++..++.++++.++||.|+.++++++|||++|+..||++++++|+++++
T Consensus 463 aL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~ 542 (980)
T 3ibv_A 463 ALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVG 542 (980)
T ss_dssp HHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTS
T ss_pred HHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhc
Confidence 999999999999864321 12234444 4444566678888999999999999999999999999999999999999
Q ss_pred ccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCccc--------ccCC---CCcchhHHHH
Q 001968 537 ERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYAS--------KELS---GSEDGSHIFE 605 (989)
Q Consensus 537 ~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~--------~~~~---~~~~~~~l~e 605 (989)
++|+++++++|+.+||++|.+||++|+++|.||+++|++.+.+++..... +... +++. ..++++++||
T Consensus 543 ~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ql~L~e 621 (980)
T 3ibv_A 543 PRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVS-PVTDMDAPVPTLNSSIRNSDFNSQLYLFE 621 (980)
T ss_dssp TTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCC-CCCC--CSSCCHHHHHHTTTHHHHHHHHH
T ss_pred cccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCC-CCCcccccccchhhhcccCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999975432 1110 0000 1246899999
Q ss_pred HHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchH
Q 001968 606 AIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIG 685 (989)
Q Consensus 606 ai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~ 685 (989)
|+|.+++..+.|++++..+++.++.|++++|+++++..... +++ . .+++|+++++|+++|||++... . ..++.
T Consensus 622 aig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~--~~~-~--~~i~~~i~al~~lakgf~~~~~-~-~~p~~ 694 (980)
T 3ibv_A 622 TVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSA--LEN-I--ISVYCSLMAIGNFAKGFPARGS-E-EVAWL 694 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC----CH-H--HHHHHHHHHHHHHHHTSCSCC--C-CCSHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC--ccH-H--HHHHHHHHHHHHHhccCCcccC-C-CCcHH
Confidence 99999998766789999999999999999999998654321 111 2 2789999999999999986522 2 22378
Q ss_pred HHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhh
Q 001968 686 LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLV 765 (989)
Q Consensus 686 ~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~ 765 (989)
.+|.++|++++.+++.|+++..||+++|++|+||+.++|+++.|++|++++.++..++.+++.+||+++++++++||+++
T Consensus 695 ~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~ 774 (980)
T 3ibv_A 695 ASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNM 774 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHh
Q 001968 766 HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYT 845 (989)
Q Consensus 766 ~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~ 845 (989)
.+.+++++.++++++|.++++. +.++|.+|+..|++|+||.|+..+++++.+++|+++.|++.|+.++.+++++
T Consensus 775 ~~~l~~ll~~l~~~if~~l~~~------~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~ 848 (980)
T 3ibv_A 775 MEITNRMLPTLLMRIFSSLSAA------PQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHF 848 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----------CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999873 3456899999999999999999999999999999998999999999999999
Q ss_pred hcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHHH
Q 001968 846 SCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVM 925 (989)
Q Consensus 846 ~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~ 925 (989)
+.+++|+.++|+|+.++.++++.|++. .+.+||.+|+++ ++|. ||.+|++++||++||+++.+++|++.++|.+
T Consensus 849 a~~~~d~~~~K~a~~~l~~~v~~~~~~----~~~~gf~~f~~~-~~~~-~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~ 922 (980)
T 3ibv_A 849 ANLVGEPATQKSSIALVSKMVSLWGGK----DGIAGFENFTLS-LTPL-CFEMPVNPNFNTRDGQSLVVLGELAGLQKII 922 (980)
T ss_dssp C-----CHHHHHHHHHHHHHHHC-----------CCHHHHHHH-HHHH-HHHGGGC----------CHHHHHHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHHHHHHCCC----CcchHHHHHHHH-HHHH-HHHhhcCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 347999999999 8886 8999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhh
Q 001968 926 YEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQ 981 (989)
Q Consensus 926 ~~~~~~~~l~~~~~~~~P~~~~~~~~~~~f~~~l~~~~~~~f~~~~~~f~~~~r~~ 981 (989)
+.++|++|++++.+.+||++++|++.+++|+++|.+.|.|.||+|++.|+.++|++
T Consensus 923 ~~~~g~~~~~~l~~~~lp~~~~~~~~~~~~~~~l~~~~~k~f~~~~~~~~~~~~~~ 978 (980)
T 3ibv_A 923 LEKLGDIYKSYLVTVYFPTVNFPDVMASEYLQALSNLDSRSFKQFFQKFIQALKSG 978 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTC----CCHHHHHHHC----------------CHHHHC-
T ss_pred HHhcCHHHHHHHHHhcCCcCCCCHHHHHHHHHHHhccchhhHHHHHHHHHHHhhcC
Confidence 99999999998888999999999999999999997789999999999999999875
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.2e-88 Score=839.00 Aligned_cols=906 Identities=17% Similarity=0.262 Sum_probs=683.4
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l 82 (989)
++++||.++|+| +++.|++|++||+++|++|++|..|..+|.++.++++||||+++|+++|+++|+.+++++|..|
T Consensus 17 ~Le~av~~ly~p----~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 17 LLDQVVSTFYQG----SGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp HHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCC----ChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 799999999998 3459999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 001968 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDEL 162 (989)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Eev 162 (989)
|+.+++++.+...+ +. ....+++|+||+|++++.|++++||+.||++++++++.+++++..++++|++|+.|+||+
T Consensus 93 r~~Ll~~l~~~~~~---~~-~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV 168 (1023)
T 4hat_C 93 RNFVVGMIISMCQD---DE-VFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEV 168 (1023)
T ss_dssp HHHHHHHHHHHHHS---HH-HHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---cc-cccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999875210 00 001258999999999999999999999999999999999988889999999999999999
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHH-H
Q 001968 163 ISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF-E 241 (989)
Q Consensus 163 ~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~-~ 241 (989)
.+ +.+...+..|++.+|+.|+.+ ++.|+++|..+|+. +.+++++..+|+|+++|++|+|++.+.++++++.++ .
T Consensus 169 ~~--~~~~~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~--~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~ 243 (1023)
T 4hat_C 169 FD--FSAEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQ--GASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTK 243 (1023)
T ss_dssp HT--SCTTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTH
T ss_pred HH--hhhccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHH
Confidence 65 345566789999999999997 99999999999985 456788999999999999999999999999999999 7
Q ss_pred HHHhcCCChhHHhHHHHHHHHHHhcCC-Ccchhhh-----Hhhh-hh-h-hhhhc-------cc--cCCcchHHHHHHHH
Q 001968 242 LILADGLPEQFRGAAVGCVLAVVSKRM-DPQSKLN-----LLQT-LQ-I-SRVFG-------LV--SEDGESELVSKVAA 303 (989)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~k~~-----li~~-l~-l-~~~~~-------~~--~~~~d~~~~~~~~~ 303 (989)
++. ++++|.+|++||++|+++.+ .+..++. ++.. ++ + ..++. .+ .+++|.++.+++|+
T Consensus 244 ~L~----~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~ 319 (1023)
T 4hat_C 244 FMT----SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1023)
T ss_dssp HHH----SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHH
T ss_pred HcC----CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHH
Confidence 775 79999999999999999765 2211111 2211 11 1 11111 11 34568899999999
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHH
Q 001968 304 LLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQIL 383 (989)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll 383 (989)
+++++|..+...+... ++.. +.+...+..++.+..+++.+.-..+++||..+...+...+.....+++++.+|+
T Consensus 320 l~~~~~e~~~~li~~~--~~~~----~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~ 393 (1023)
T 4hat_C 320 FLTTYLARNRALLESD--ESLR----ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLR 393 (1023)
T ss_dssp HHHHHHHHHGGGGTSC--GGGH----HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--cchh----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 9999998877644321 1111 234444556677666665443225677787776654333334567899999999
Q ss_pred HHHHHHcccCccc----cccccccccC--ChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChh
Q 001968 384 EVILTQIRYDPMY----RNNLDVLDKI--GIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVE 457 (989)
Q Consensus 384 ~~l~~k~~~p~~~----~~~~~~~~~~--~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~ 457 (989)
.++++||+||++. +++.+|.++. +.|+.+.|+.+| +++..++.+.+..+++.+.+.+.+.+.+ +..+|+
T Consensus 394 ~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~-~~~~W~ 468 (1023)
T 4hat_C 394 LVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDG-SEWSWH 468 (1023)
T ss_dssp HHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSS-TTCCHH
T ss_pred HHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhcC-CCCCHH
Confidence 9999999999843 1111332211 345678898888 8888999999889999999988877654 347899
Q ss_pred HHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCC-----CCCchHH--HHHHHHHHhhHhhhhhccCchHHH
Q 001968 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPC-----HSNRLVA--LVYLETVTRYMKFIQEHTQYIPVV 530 (989)
Q Consensus 458 ~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~-----~~~~~v~--~~~~~~lg~y~~~l~~~~~~L~~v 530 (989)
.+||++|+++++++++.++. .+..++++++.|+. ++. ++++.|+ ++| ++|||++|+..||++|+++
T Consensus 469 ~~EA~~~a~gaIa~~~~~~~---e~~~l~~vi~~Ll~--l~~~~~~~d~k~~v~~t~~~--~lGry~~wl~~~~~~L~~v 541 (1023)
T 4hat_C 469 NINTLSWAIGSISGTMSEDT---EKRFVVTVIKDLLD--LCVKKRGKDNKAVVASDIMY--VVGQYPRFLKAHWNFLRTV 541 (1023)
T ss_dssp HHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHH--HHHHCCSHHHHHHHHHHHHH--HHHTCHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchh---HHHHHHHHHHHHHH--hhhccccCcchHHHHHHHHH--HHHHHHHHHhccHHHHHHH
Confidence 99999999999999997642 23567777777663 332 2345554 445 9999999999999999999
Q ss_pred HHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc--------hhhHHHHHHHhHhhhhccccCCcccccCCCCcchhH
Q 001968 531 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--------VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 602 (989)
Q Consensus 531 l~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l--------~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 602 (989)
+++++. |+++++|+|+.+||.+|.+||++|+..+ .||+++|++.+...+.... .++...
T Consensus 542 l~~L~~--~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~-----------~~~~~~ 608 (1023)
T 4hat_C 542 ILKLFE--FMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ-----------PQQVHT 608 (1023)
T ss_dssp HHHHHH--HTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-----------HHHHHH
T ss_pred HHHHHH--HhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC-----------HHHHHH
Confidence 999998 9988889999999999999999999888 3799999999988875321 356788
Q ss_pred HHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCc-hhhhHHHHHHHHHHHHhhhccCCCCCCcCCCc
Q 001968 603 IFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPE-ESTAKFANIQQIIMAINALSKGFNERLVTSSR 681 (989)
Q Consensus 603 l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~-~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~ 681 (989)
+|||+|++|++.+ +.+.+.++++.++.|+.+.|+++.++....... .+......+.+++.++++++++.+..+ .
T Consensus 609 lyeai~~vi~~~~-~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f----~ 683 (1023)
T 4hat_C 609 FYKACGIIISEER-SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF----Y 683 (1023)
T ss_dssp HHHHHHHHHTTCC-SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGG----H
T ss_pred HHHHHHHHHHhCC-CHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHH----H
Confidence 9999999999965 556799999999999999999998754321110 123345567888899999888877543 2
Q ss_pred CchHHHHHHHHHHHHHH---hhc--------CCCChhHhHHHHHHHH----HHHhh-hccc------ccCchHHHHHHHH
Q 001968 682 PAIGLMFKQTLDVLLQI---LVV--------FPKVEPLRCKVTSFIH----RMVDT-LGAS------VFPYLPKALEQLL 739 (989)
Q Consensus 682 ~~~~~~~~~~~~~~~~~---l~~--------~~~~~~i~e~~~~~~~----~~~~~-l~~~------~~p~l~~l~~~ll 739 (989)
|.+.+++..++.++... +.. -.+.+.+| .+++++ +++.+ ++.. ...++|++++.++
T Consensus 684 ~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r--~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl 761 (1023)
T 4hat_C 684 PQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVR--GLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVL 761 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHH--HHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHH
Confidence 23444455444443221 110 00111222 223222 22222 2211 2457899999999
Q ss_pred ccCCh----hHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 001968 740 AESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLH 815 (989)
Q Consensus 740 ~~~~~----~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~ 815 (989)
.+|.. .+.+++|++++.+|+++|..+.+.+..++..++++|++||++ ++.+|||+|.+||+|+.
T Consensus 762 ~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~------------~~~~~Pe~r~~ff~ll~ 829 (1023)
T 4hat_C 762 EDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK------------DFTEYPEHRVEFYKLLK 829 (1023)
T ss_dssp HHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS------------CSSSSHHHHHHHHHHHH
T ss_pred HHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc------------ccccChHHHHHHHHHHH
Confidence 88843 245999999999999999999999999999999999999986 55699999999999999
Q ss_pred HHHhcCCCccccCCC--CcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhh
Q 001968 816 VIATHDLSSVFLSPK--SRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMN 893 (989)
Q Consensus 816 ~~~~~~~~~~~~s~~--~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (989)
+++++|+..+|.-|+ .+.+++++++++ +|+++++..++++++.++++...+..+.+...++|++|+...+..
T Consensus 830 ~~~~~~f~~~~~~~~~~~~~~~~~~~~a~-----~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~- 903 (1023)
T 4hat_C 830 VINEKSFAAFLELPPAAFKLFVDAICWAF-----KHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSE- 903 (1023)
T ss_dssp HHHHHCTHHHHTSCHHHHHHHHHHHHHHH-----TCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHChHHHHcCCHHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-
Confidence 999999988884332 255666666666 999999999999999999998875322234456667776554322
Q ss_pred hhhhhccCCCCCcccchhhHhHHHHHHHHHH-----------------HHHHHhHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 001968 894 CCLYSVLDKSFEFGDANTLVLFGEIVLAQKV-----------------MYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYC 956 (989)
Q Consensus 894 ~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~-----------------~~~~~~~~~l~~~~~~~~P~~~~~~~~~~~f~ 956 (989)
.+.++....+..+-.....++..+..+... .++.+..+|+..++.+.|| +++++|...|+
T Consensus 904 -~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp--~~~~~qi~~fv 980 (1023)
T 4hat_C 904 -TFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--HLTSEQIASFL 980 (1023)
T ss_dssp -HHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHH
T ss_pred -HHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 133333222221111112334443333221 2344556788788888999 88999999999
Q ss_pred HHhcc--CChhHHHHHHHHHHHHHHhhccC
Q 001968 957 QKLQG--NDIKALKSFYQSLIEKLRVQQNG 984 (989)
Q Consensus 957 ~~l~~--~~~~~f~~~~~~f~~~~r~~~~~ 984 (989)
++|++ .|..+||.++|||++++|++++.
T Consensus 981 ~~l~~~~~~~~~f~~~lrdfli~~ke~~~~ 1010 (1023)
T 4hat_C 981 SALTKQCKDLVVFKGTLRDFLVQIKEVGGD 1010 (1023)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHTTSSSCC
T ss_pred HHHHHccCCHHHHHHHHHHHhHHhHhhcCC
Confidence 99998 69999999999999999998864
No 3
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=8.8e-87 Score=817.01 Aligned_cols=909 Identities=16% Similarity=0.276 Sum_probs=676.5
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l 82 (989)
.++++|.++|+| ++++|++|++||+++|++|++|..|..+|..++++++||||+++|+++|+++|+.+++++|..|
T Consensus 29 ~Le~lv~~ly~p----~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 29 LLDNVVNCLYHG----EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp HHHHHHHTTTCS----SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 689999999997 6789999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 001968 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDEL 162 (989)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Eev 162 (989)
|+.|++++.+...++ . ....++.+++|+|++++.|++++||+.||++++++++.+++++.+++++|++|+.|+|||
T Consensus 105 R~~Ll~~l~~~~~~~---~-~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV 180 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDP---T-CVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEV 180 (1073)
T ss_dssp HHHHHHHHHHHHTCG---G-GGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCc---c-ccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 999999998752110 0 012346778999999999999999999999999999999888889999999999999999
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHH-HH
Q 001968 163 ISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLL-FE 241 (989)
Q Consensus 163 ~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l-~~ 241 (989)
.++ .+.+.+..|++.+|+.|+++ ++.|+++|..+|+. ..+++++..+|+|+++|++|+|++.+.++++++++ +.
T Consensus 181 ~d~--~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~--~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~ 255 (1073)
T 3gjx_A 181 FDF--SSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMEN--SQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 255 (1073)
T ss_dssp TTS--HHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHH
T ss_pred Hhc--ccccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHH
Confidence 653 23445678999999999997 99999999999985 56889999999999999999999999999999988 56
Q ss_pred HHHhcCCChhHHhHHHHHHHHHHhcCCCc-chhhh-Hhhhh-h-hhhhhcc-------c--cCCcchHHHHHHHHHHHHH
Q 001968 242 LILADGLPEQFRGAAVGCVLAVVSKRMDP-QSKLN-LLQTL-Q-ISRVFGL-------V--SEDGESELVSKVAALLTGY 308 (989)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~l~~i~~~~~~~-~~k~~-li~~l-~-l~~~~~~-------~--~~~~d~~~~~~~~~l~~~~ 308 (989)
.+ +++++|.+|++||++|+++..+. .+++. +++.+ + +..++.. + .+++|.++.+++|++++++
T Consensus 256 ~L----~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~ 331 (1073)
T 3gjx_A 256 FL----NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTF 331 (1073)
T ss_dssp TS----SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred hc----CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 65 47999999999999999985322 12221 22221 1 2222211 1 3466789999999999999
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhc-cC------CCC----------
Q 001968 309 AMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMK-SL------SPL---------- 371 (989)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~------~~~---------- 371 (989)
|..+...++.. ++.. ..+...+..++.+..+++.+.--.+++||..+...+- .. .++
T Consensus 332 ~e~~~~lIe~~--p~~~----~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~ 405 (1073)
T 3gjx_A 332 LKEHGQLLEKR--LNLR----EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIP 405 (1073)
T ss_dssp HHHHHHHHHHC--GGGH----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSC
T ss_pred HHHHHHHHhcC--ccch----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 99888765432 1111 2333445566777777654432245566655544431 11 111
Q ss_pred --hHHHhHhHHHHHHHHHHHcccCccccc----cccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 001968 372 --KEEQRLHAGQILEVILTQIRYDPMYRN----NLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLA 445 (989)
Q Consensus 372 --~~~~~~~~~~ll~~l~~k~~~p~~~~~----~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~ 445 (989)
...+++++.++..+++.||.||++... ..++.-+. -.|-++ -+.++.+++++..+++++++.++..+.+.+.
T Consensus 406 ~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~-~~d~~~-~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~ 483 (1073)
T 3gjx_A 406 PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREF-MKDTDS-INLYKNMRETLVYLTHLDYVDTEIIMTKKLQ 483 (1073)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEE-CSSCHH-HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHH-Hhhcch-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 123789999999999999999987421 00111000 001111 2455677888888888899999999988888
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCC----Cch-HH--HHHHHHHHhhHh
Q 001968 446 NAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHS----NRL-VA--LVYLETVTRYMK 518 (989)
Q Consensus 446 ~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~----~~~-v~--~~~~~~lg~y~~ 518 (989)
..+++ +..+|+.+||+++++++++..+.++. ++..++++++.|+ +++.++ +++ ++ ++| ++|||++
T Consensus 484 ~~~~~-~~~sW~~lea~~~aigaIag~~~~~~---E~~~Lp~vi~~Ll--~L~e~~~~kd~k~~vas~i~~--vlgrY~~ 555 (1073)
T 3gjx_A 484 NQVNG-TEWSWKNLNTLCWAIGSISGAMHEED---EKRFLVTVIKDLL--GLCEQKRGKDNKAIIASNIMY--IVGQYPR 555 (1073)
T ss_dssp HHHTS-CCCCHHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHH--HHHHHSCSHHHHHHHHHHHHH--HHHHCHH
T ss_pred HHhcC-CCCCHHHHhHHHHHHHHHHCcCCccc---ccchHHHHHHHHh--cccccccccchhHHHHHHHHH--HHhhhHH
Confidence 76643 35679999999999999987766431 3468899998887 344333 344 43 556 8999999
Q ss_pred hhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc--------hhhHHHHHHHhHhhhhccccCCcc
Q 001968 519 FIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--------VPFIENILQSLQDTIARFTSMNYA 590 (989)
Q Consensus 519 ~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l--------~p~~~~il~~l~~~l~~~~~~~~~ 590 (989)
|+..||++|++++++++. ++++++++|+.+||.+|.+||++|+.++ .||+++|++.+........
T Consensus 556 wl~~h~~~L~~vl~~L~~--~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~----- 628 (1073)
T 3gjx_A 556 FLRAHWKFLKTVVNKLFE--FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ----- 628 (1073)
T ss_dssp HHHHCHHHHHHHHHHHHH--HTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC-----
T ss_pred HHHhCHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC-----
Confidence 999999999999999998 9999999999999999999999999987 3799999988887765432
Q ss_pred cccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCC-chhhhHHHHHHHHHHHHhhhc
Q 001968 591 SKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNP-EESTAKFANIQQIIMAINALS 669 (989)
Q Consensus 591 ~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~l~~i~~i~ 669 (989)
+++...+|||+|++|++.+ +...+..+++.+++|++++|++++++.....+ -.|+..+.++.+++.+..+++
T Consensus 629 ------~~~~~~lyeav~~vi~~~p-~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~ 701 (1073)
T 3gjx_A 629 ------PQQVHTFYEAVGYMIGAQT-DQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRAC 701 (1073)
T ss_dssp ------HHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHH
Confidence 3567899999999999965 44558999999999999999999875432111 123344566888888888888
Q ss_pred cCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcC-------CC--ChhHhHHHHHHHH----HHHhh-hccc------ccC
Q 001968 670 KGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF-------PK--VEPLRCKVTSFIH----RMVDT-LGAS------VFP 729 (989)
Q Consensus 670 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~--~~~i~e~~~~~~~----~~~~~-l~~~------~~p 729 (989)
++.+..+ .+.+.+++.++++++...-+.- +. ......+.+++++ +++.+ .+.. ...
T Consensus 702 ~~~g~~f----~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~ 777 (1073)
T 3gjx_A 702 KAVGHPF----VIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 777 (1073)
T ss_dssp HHHCGGG----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred hhcchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 8887644 2345566666666553211100 00 0111223444444 34333 3332 347
Q ss_pred chHHHHHHHHccCCh----hHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHH
Q 001968 730 YLPKALEQLLAESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQE 805 (989)
Q Consensus 730 ~l~~l~~~ll~~~~~----~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd 805 (989)
++|++++.++.+|.. .+.+++|++++.+|+++|..+.+.++.++..++++|++||++ |+.+|||
T Consensus 778 ~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~------------~f~~~Pe 845 (1073)
T 3gjx_A 778 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK------------DFEEYPE 845 (1073)
T ss_dssp TSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSS------------CSSSCHH
T ss_pred hHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhC------------CcccCcH
Confidence 789999999988853 356999999999999999999999999999999999999986 5569999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCCC--cCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHH
Q 001968 806 LQRTLYTFLHVIATHDLSSVFLSPKS--RGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQ 883 (989)
Q Consensus 806 ~~~~~~~ll~~~~~~~~~~~~~s~~~--~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~ 883 (989)
+|.+||+|+.++..+|++.+|.-|.. +.++++++|++ +|+++++..++++++.++++...+++ +...++|+
T Consensus 846 ~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~-----kh~~r~i~~~~l~~~~~ll~~~~~~~--~~~~~F~~ 918 (1073)
T 3gjx_A 846 HRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAF-----KHTMRNVADTGLQILFTLLQNVAQEE--AAAQSFYQ 918 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHH-----TCSSHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHc-----CCCChhHHHHHHHHHHHHHHHhhcCh--HHHHHHHH
Confidence 99999999999999999988832322 55677777776 99999999999999999999986431 23455666
Q ss_pred HHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHH-------------HHHHHhHHHHHHHHHhcCCCCCCCHH
Q 001968 884 SFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKV-------------MYEKFGNDFLVHFVTKGFPSAHCPPD 950 (989)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~-------------~~~~~~~~~l~~~~~~~~P~~~~~~~ 950 (989)
+|+...+.. .+.++....+.-+-...-.++..+..+... -++.+..+|+..++...|| +++++
T Consensus 919 ~~~~~~~~~--i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp--~~~~~ 994 (1073)
T 3gjx_A 919 TYFCDILQH--IFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFP--HLQDA 994 (1073)
T ss_dssp HHHHHHHHH--HHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCT--TSCHH
T ss_pred HHHHHHHHH--HHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCC--CCCHH
Confidence 666544322 133332222211111111333333332211 0345566788888888999 89999
Q ss_pred HHHHHHHHhcc--CChhHHHHHHHHHHHHHHhhccCC
Q 001968 951 LAEQYCQKLQG--NDIKALKSFYQSLIEKLRVQQNGS 985 (989)
Q Consensus 951 ~~~~f~~~l~~--~~~~~f~~~~~~f~~~~r~~~~~~ 985 (989)
|.+.|+++|++ .|..+||.++|||++++|+++|.+
T Consensus 995 qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ke~~~~~ 1031 (1073)
T 3gjx_A 995 QVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGED 1031 (1073)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTSCCTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999998 599999999999999999998854
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-79 Score=778.11 Aligned_cols=897 Identities=12% Similarity=0.171 Sum_probs=672.9
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
+++++|++.+|+| |++.|++|+++|++||++|++|.+|.++|..+.++++|+||+++|+++|+++|..+++++|..
T Consensus 7 ~~l~~~l~~~~~~----d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 82 (971)
T 2x1g_F 7 ARLEEAVVSFYRS----NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREE 82 (971)
T ss_dssp ----CTHHHHHTS----TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHH
Confidence 4588999999986 778899999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcC-------CchhHHHHHHH
Q 001968 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK-------GSMVIDMFCRV 154 (989)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~-------~~~~~~~~L~i 154 (989)
+|+.|++++.+. ..++++||+|+|.+++.|++++|| .||++++++++.+++ ++..++..+++
T Consensus 83 ir~~ll~~l~~~----------~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i 151 (971)
T 2x1g_F 83 LKQKILESIVRF----------AGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEV 151 (971)
T ss_dssp HHHHHHHHHHHH----------TTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 999999999986 124789999999999999999999 999999999999876 34688999999
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----HHHHHHHHHHhhcccc--cccc
Q 001968 155 LNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSD-----FEVCTGVLDCMRRYIS--WIDI 227 (989)
Q Consensus 155 L~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~-----~~l~~~~L~~l~~~i~--wi~~ 227 (989)
|..++||+.+.+ ...|+..+++.++.+ ++.+++++.++++...+.. .++...+|+|+++|+. |+|.
T Consensus 152 L~~l~EEi~~~~------~~~~r~~~~~~l~~~-~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~ 224 (971)
T 2x1g_F 152 LTAIPEEAQVIH------TSVKRVVLRAEIAKR-VQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTI 224 (971)
T ss_dssp HHHHHHHHHHCC------CSSCHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred HHHhHHHHhccC------cHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCc
Confidence 999999986432 234667888999996 9999999999997642211 2789999999999999 9998
Q ss_pred ccccccccHHHHHHHHH--------------hcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhh-----hhhhhhcc
Q 001968 228 NLIANDAFIPLLFELIL--------------ADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTL-----QISRVFGL 288 (989)
Q Consensus 228 ~~~~~~~~l~~l~~~l~--------------~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l-----~l~~~~~~ 288 (989)
+ .++.+++.++. +. +..++++++++|++|+++|++++. +.++..++..+ ++.+.+..
T Consensus 225 ~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 300 (971)
T 2x1g_F 225 E--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPD-CHNYPKTAFVLIKMFLDSLSEITK 300 (971)
T ss_dssp G--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSG-GGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred c--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcc-ccccHHHHHHHHHHHHHhHHHHHH
Confidence 8 56788998887 51 001368999999999999999753 23334444332 11111111
Q ss_pred ccCCcc---hHHHHHHHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHhhc----C-cccchhcHHHHHH
Q 001968 289 VSEDGE---SELVSKVAALLTGYAMEVLDCVKR-LNAENANEASKKLLNEVLPSVFYVMQN----C-EVDTTFSIVQFLS 359 (989)
Q Consensus 289 ~~~~~d---~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~----~-~~~~~~~~~~~~~ 359 (989)
...++| +++...++++++.++..+.+.+.. +.... ....+.+..+++.++.++.+ + +.+....+++||.
T Consensus 301 ~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~ 378 (971)
T 2x1g_F 301 TEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSAD--PELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWY 378 (971)
T ss_dssp HHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHH
Confidence 113344 478889999888888765543320 00000 00113566788888887765 2 3233337888998
Q ss_pred HHHHHhc------cCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhCh
Q 001968 360 GYVATMK------SLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAP 433 (989)
Q Consensus 360 ~~l~~~~------~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~ 433 (989)
.+...+. +.......+++++.++++.++.|+.||++.+ + ++|+.+|+++|.+||++++++++.++.+.+
T Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~----~-~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~ 453 (971)
T 2x1g_F 379 MLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS----L-AKWSSDDLECFRCYRQDISDTFMYCYDVLN 453 (971)
T ss_dssp HHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT----T-SCSCHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc----c-cccCHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776332 1122335678899999999999999987653 2 234566788999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhcC--CCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCC-CCCchHHHHHH
Q 001968 434 EVTQVFIRNSLANAVTF--SADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPC-HSNRLVALVYL 510 (989)
Q Consensus 434 ~~~l~~i~~~l~~~~~~--~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~-~~~~~v~~~~~ 510 (989)
+.+++.+.+.+...+++ ....+|+++||++++++++++++... ....++++++.+. .++. ++||.|+..++
T Consensus 454 ~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~----~~~~l~~l~~~l~--~l~~~d~~~~vr~~a~ 527 (971)
T 2x1g_F 454 DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE----EKRQIPRLMRVLA--EIPYEKLNVKLLGTAL 527 (971)
T ss_dssp THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHH--HSCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh----hhHHHHHHHHHHH--hcCccccCHHHHHHHH
Confidence 88888887777766542 12378999999999999999999864 2467888888555 3442 46899976777
Q ss_pred HHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcc
Q 001968 511 ETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYA 590 (989)
Q Consensus 511 ~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~ 590 (989)
.++|+|++|+..|++++++++++++. ++ + ++|+.+||++|.+||++|+..+.||+++|++.+..++.....
T Consensus 528 ~~l~~~~~~l~~~~~~l~~vl~~l~~--~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~---- 598 (971)
T 2x1g_F 528 ETMGSYCNWLMENPAYIPPAINLLVR--GL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM---- 598 (971)
T ss_dssp HHHHHTHHHHC----CHHHHHHHHHH--HH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--Hh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC----
Confidence 79999999999999999999999998 88 3 789999999999999999999999999999999999874211
Q ss_pred cccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhcc
Q 001968 591 SKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSK 670 (989)
Q Consensus 591 ~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k 670 (989)
+.+++..++|++|.++++. +++++.+++..++.|+++.|+++.+.... +++ ....+.+.+..++.+..
T Consensus 599 -----~~~~~~~~~~ai~~i~~~~--~~~~~~~~~~~ll~~l~~~l~~~~~~~~~--~~~---~~~~~~~~l~~L~~~~~ 666 (971)
T 2x1g_F 599 -----KNSDSVRLMFSIGKLMSLL--RPEEIPKYLDIIVSPCFEELQAICQADSK--TPA---ARIRTIFRLNMISTLFS 666 (971)
T ss_dssp -----CHHHHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHHHHHHHHHHTC-----CHH---HHHHHHHHHHHHHHHHH
T ss_pred -----ChHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhcCCC--Chh---hHHHHHHHHHHHHHHHh
Confidence 1357889999999999984 46889999999999999999998654321 111 11233444555555544
Q ss_pred CCCCCCcCCC-----cCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChh
Q 001968 671 GFNERLVTSS-----RPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK 745 (989)
Q Consensus 671 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~ 745 (989)
+++....... ...+.+++.++|+++..+++.+.++.++.+++|.++++++.++|+++.||+|++++.++..++..
T Consensus 667 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~ 746 (971)
T 2x1g_F 667 SLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR 746 (971)
T ss_dssp HHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--
T ss_pred hcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC
Confidence 4443211000 22477899999999999999888888999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHhhhh--hHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001968 746 EMAGFLVLLNQLICKFNTL--VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLS 823 (989)
Q Consensus 746 ~~~~~L~l~~~li~~~~~~--~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~ 823 (989)
+++++|++++.++..||.+ +.+.+.+++.+++.+++.++.+. .+++.+++||++++||.|+.+++.+++.
T Consensus 747 ~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~--------~~~~~~~~pd~~~~~f~ll~~~l~~~p~ 818 (971)
T 2x1g_F 747 CCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFEST--------PEQNFSNISDTMETFFGCLTQIIKKIPQ 818 (971)
T ss_dssp CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSC--------TTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred CchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcc--------cccCCccCchHHHHHHHHHHHHHHhCcH
Confidence 7799999999999999985 77889999999999999998762 1346788999999999999999999988
Q ss_pred ccccCCCCcCC-hHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCC
Q 001968 824 SVFLSPKSRGY-LDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDK 902 (989)
Q Consensus 824 ~~~~s~~~~~~-~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (989)
.++.+ +. +..++...+.+. +++|+.+.|+|++||.+++...+. .+.+++++.+.... ++..++.
T Consensus 819 ~~~~s----~~~l~~i~~~~~~~l-~~~~~~~~~s~~~fl~~~i~~~~~-------~~~~~~~~~~~g~~-l~~~l~~-- 883 (971)
T 2x1g_F 819 VLEDK----TLAYDRLVFYAQRGM-TLPESGAIRNSIQFLTHFVMQSRN-------HAHVTEVVLATGEQ-TLYTAMM-- 883 (971)
T ss_dssp GGGCT----TSCHHHHHHHHHHHH-TSSCSSHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHH-HHHHHHH--
T ss_pred HHcCC----cccHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHhHHH-HHHHHHH--
Confidence 87643 35 777777766555 789999999999999999887431 23456666543222 2222221
Q ss_pred CCCcccchhhHhHHHHHHHHHHHHHHHhHHHHHHHHHh----cCCCCCCCHHHHHHHHHHhcc--CChhHHHHHHHHHHH
Q 001968 903 SFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTK----GFPSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIE 976 (989)
Q Consensus 903 ~f~~~d~~~~~~~~ei~~~l~~~~~~~~~~~l~~~~~~----~~P~~~~~~~~~~~f~~~l~~--~~~~~f~~~~~~f~~ 976 (989)
.+.|+.++..+++++++++.+..+++.++..|+... .||+.+++++++++|+++|++ .+.|+||+++++|+.
T Consensus 884 --~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~ 961 (971)
T 2x1g_F 884 --CVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAM 961 (971)
T ss_dssp --HHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred --HhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 135666778889999999999999998877777543 699989999999999999965 389999999999999
Q ss_pred HHHhhcc
Q 001968 977 KLRVQQN 983 (989)
Q Consensus 977 ~~r~~~~ 983 (989)
.|||..|
T Consensus 962 ~~r~~~~ 968 (971)
T 2x1g_F 962 KTRGLTE 968 (971)
T ss_dssp HHHC---
T ss_pred HHcCccc
Confidence 9999776
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.9e-77 Score=761.55 Aligned_cols=888 Identities=14% Similarity=0.182 Sum_probs=690.0
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI 82 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l 82 (989)
++++++..+|++ +|++.|++|+++|++||++|++|.+|..+|.++.++++|+||+++|+++|+++|+.+++++|..+
T Consensus 25 ~l~~~l~~l~~~---~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 25 NVEKALHQLYYD---PNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH
Confidence 588999997875 48999999999999999999999999999988778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcC------CchhHHHHHHHHH
Q 001968 83 RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNK------GSMVIDMFCRVLN 156 (989)
Q Consensus 83 r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~------~~~~~~~~L~iL~ 156 (989)
|+.|++++.+. ..+++.||+|+|.+++.|++++||++||++++++++.+++ ++..++..+++|.
T Consensus 102 r~~ll~~l~~~----------~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 102 KAQLFTQITRF----------ASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp HHHHHHHHHHT----------TTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 99999999875 1247999999999999999999999999999999999876 4557899999999
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccH
Q 001968 157 SLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFI 236 (989)
Q Consensus 157 ~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l 236 (989)
.++||+.+.+. +..|+..+++.|+.+ ++.|+.++.++++.. .++..+...+++|+.+|+. ++.....++.++
T Consensus 172 ~l~ee~~~~~~-----~~~~r~~~~~~l~~~-~~~i~~ll~~~l~~~-~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll 243 (963)
T 2x19_B 172 VLPEEFQTSRL-----PQYRKGLVRTSLAVE-CGAVFPLLEQLLQQP-SSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALI 243 (963)
T ss_dssp HHHHHHTTCCC--------------CCSGGG-HHHHHHHHHHHHSCT-TCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHH
T ss_pred hCHHHHhcccC-----cHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHHHc-CCCCcccchHHH
Confidence 99999965432 456778888889886 999999999998753 2234588999999988776 555444457788
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhh-----hh-hhhhccccCCcchHHHHHHHHHHHHHHH
Q 001968 237 PLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTL-----QI-SRVFGLVSEDGESELVSKVAALLTGYAM 310 (989)
Q Consensus 237 ~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l-----~l-~~~~~~~~~~~d~~~~~~~~~l~~~~~~ 310 (989)
+.+++.+ .+++++.+|++|+.+++++...+. ....+..+ ++ ..+... ..++|.++...+|++++.++.
T Consensus 244 ~~l~~~l----~~~~~~~~a~~~l~~i~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~~~d~~~~~~~~~l~~~~~~ 317 (963)
T 2x19_B 244 QAAFAAL----QDSELFDSSVEAIVNAISQPDAQR-YVNTLLKLIPLVLGLQEQLRQA-VQNGDMETSHGICRIAVALGE 317 (963)
T ss_dssp HHHHHHT----TSTTTHHHHHHHHHHHHTCTTGGG-CHHHHHHHHHHHHTTHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh----CCchHHHHHHHHHHHHHccccccc-CHHHHHHHHHHHHhhHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence 8888876 378999999999999999764432 11222211 11 111111 123566888999998888887
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcC-----cccchhcHHHHHHHHHHHhccC-----CCChHHHhHhHH
Q 001968 311 EVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNC-----EVDTTFSIVQFLSGYVATMKSL-----SPLKEEQRLHAG 380 (989)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~ 380 (989)
.+...+..-... .+.+..++++++.+..++ +.+....+++||..+...+... +.....+.+++.
T Consensus 318 ~~~~~l~~~~~~------~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~ 391 (963)
T 2x19_B 318 NHSRALLDQVEH------WQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYF 391 (963)
T ss_dssp HHHHHHHHCGGG------HHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCccc------hHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 665443210000 134567888888888763 2222337889999888743211 123345678999
Q ss_pred HHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCC-CCCChhHH
Q 001968 381 QILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS-ADRNVEEV 459 (989)
Q Consensus 381 ~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~-~~~~w~~~ 459 (989)
+++.+++.+|.||++.+ + +++++||+++|.+||++++++++.++.+.+..+++.+.+.+...+++. ++.+|+.+
T Consensus 392 ~l~~~ll~~~~~p~~~~----~-~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~ 466 (963)
T 2x19_B 392 QLVDVLLHKAQFPSDEE----Y-GFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHT 466 (963)
T ss_dssp HHHHHHHHHHSCCCHHH----H-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHH
T ss_pred HHHHHHHHHHcCCCccc----c-cCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 99999999999987643 2 233455667899999999999999999888888888888887777432 34789999
Q ss_pred HHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccC
Q 001968 460 EAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERG 539 (989)
Q Consensus 460 Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~ 539 (989)
||++++++++++++... ....++++++.+. .++. +||.|+..++.++|+|++|+..|++++++++++++. +
T Consensus 467 eaal~al~~i~~~~~~~----~~~~l~~l~~~l~--~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~--~ 537 (963)
T 2x19_B 467 EALLYGFQSIAETIDVN----YSDVVPGLIGLIP--RISI-SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLH--A 537 (963)
T ss_dssp HHHHHHHHHHTTSCCSS----CCSHHHHHHHHGG--GSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHH--H
T ss_pred HHHHHHHHHHHhhcCch----hhHHHHHHHHHHH--hCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH--H
Confidence 99999999999999763 3467888888665 3443 688886556669999999999999999999999998 8
Q ss_pred CCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChh
Q 001968 540 IHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPE 619 (989)
Q Consensus 540 l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~ 619 (989)
+++ ++|+.+||++|.+||++|+..+.||+++|++.+..++.... . +.+.+..+|||+|.++++. +++
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~-~--------~~~~~~~~~eai~~i~~~~--~~~ 604 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQI-H--------KTSQCMWLMQALGFLLSAL--QVE 604 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTC-S--------CHHHHHHHHHHHHHHHTTS--CHH
T ss_pred hCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-C--------ChHHHHHHHHHHHHHHhcC--CHH
Confidence 865 78999999999999999999999999999999998886421 1 1356889999999999884 468
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcC--------------CCcCchH
Q 001968 620 KQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVT--------------SSRPAIG 685 (989)
Q Consensus 620 ~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~--------------~~~~~~~ 685 (989)
++.+|+..++.|+.+.|+++.++.. + ......+...+.+++.++++++..... .....+.
T Consensus 605 ~~~~~~~~l~~~l~~~l~~~~~~~~---~---~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 605 EILKNLHSLISPYIQQLEKLAEEIP---N---PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCS---C---HHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 8999999999999999998754221 1 122334566778888888887643210 0122367
Q ss_pred HHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhh-
Q 001968 686 LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTL- 764 (989)
Q Consensus 686 ~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~- 764 (989)
+++.++|+++..+++.+.++..+.|.+|.++++++.++|+++.||+|++++.++..|...+.++++++++.++..||.+
T Consensus 679 ~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 679 VVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCc
Confidence 8999999999999999888889999999999999999999999999999999998886655689999999999988775
Q ss_pred -hHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHH
Q 001968 765 -VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLL 843 (989)
Q Consensus 765 -~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~ 843 (989)
+.+.+..++..++..++++++. ++.++||++++||.|+.+++.+++..++ +++ ..++.++.+++
T Consensus 759 ~~~~~~~~~l~~~~~~~l~~~~~------------~~~~~pd~~~~~f~ll~~~~~~~~~~~~-~~~--~~~~~i~~~~~ 823 (963)
T 2x19_B 759 AHFPPIEALFLLVTSVTLTLFQQ------------GPRDHPDIVDSFMQLLAQALKRKPDLFL-CER--LDVKAVFQCAV 823 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH------------CTTTCHHHHHHHHHHHHHHHHHCGGGGG-CTT--SCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhh------------CcccCchHHHHHHHHHHHHHHhCcHHHc-CCc--ccHHHHHHHHH
Confidence 5678888999999999998873 2346799999999999999999987775 322 13888888887
Q ss_pred HhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHH
Q 001968 844 YTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQK 923 (989)
Q Consensus 844 ~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~ 923 (989)
.+. +++|+.+.++|++++.+++..++.. +...+|+.+. +...+...+. .+.|+.++..+.+++++++
T Consensus 824 ~~l-~~~~~~~~~~~l~~l~~l~~~~~~~-------~~~~~~~~~~-~~~l~~~l~~----~l~~~~~~~~~~~~~~il~ 890 (963)
T 2x19_B 824 LAL-KFPEAPTVKASCGFFTELLPRCGEV-------ESVGKVVQED-GRMLLIAVLE----AIGGQASRSLMDCFADILF 890 (963)
T ss_dssp HHT-TCSCHHHHHHHHHHHHHHGGGTTSS-------CHHHHHTTTS-HHHHHHHHHH----HHTTTSCGGGHHHHHHHHH
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHhcCCCh-------HHHHHHHHHH-HHHHHHHHHH----HhcccCChhHHHHHHHHHH
Confidence 766 7899999999999999999877521 3455555432 2221222111 1245566777889999999
Q ss_pred HHHHHHhHHHHHHHHH----hcCCCCCCCHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhhccC
Q 001968 924 VMYEKFGNDFLVHFVT----KGFPSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKLRVQQNG 984 (989)
Q Consensus 924 ~~~~~~~~~~l~~~~~----~~~P~~~~~~~~~~~f~~~l~~--~~~~~f~~~~~~f~~~~r~~~~~ 984 (989)
.++.+++..+..|+.+ ..||+.+++++++++|+++|++ .+.|+||++++||+..|||.+|-
T Consensus 891 ~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~~~f~~~l~~F~~~~r~~~~~ 957 (963)
T 2x19_B 891 ALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGT 957 (963)
T ss_dssp HHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCccCc
Confidence 9988888766655543 3699889999999999999976 49999999999999999998763
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=4e-77 Score=759.47 Aligned_cols=904 Identities=17% Similarity=0.252 Sum_probs=670.5
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
+++++++..+|+| +++.|++|+++|+++|++|++|..|.++|.++.++++|+||+++|+++|+++|..+++++|..
T Consensus 16 ~~l~~~l~~~~~p----~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ 91 (1049)
T 3m1i_C 16 ALLDQVVSTFYQG----SGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1049)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHHhCC----ChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHH
Confidence 4789999999998 567899999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 001968 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDE 161 (989)
Q Consensus 82 lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee 161 (989)
||+.+++++.+...+. . ....++.||+|+|.+++.|++++||+.||++++++++.+++++..++..+.+|..++||
T Consensus 92 ir~~ll~~l~~~~~~~---~-~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 92 IRNFVVGMIISMCQDD---E-VFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHCH---H-HHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcc---c-cchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 9999999998762100 0 00003799999999999999999999999999999999987667788999999999999
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHH
Q 001968 162 LISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFE 241 (989)
Q Consensus 162 v~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~ 241 (989)
+.++ .++..+..|+..+|+.|+.+ ++.|+.++.++++. ..++++...+|+|+.+|++|++++.+.++++++.+++
T Consensus 168 v~~~--~~~~~~~~r~~~lk~~l~~~-~~~i~~~~~~~l~~--~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~ 242 (1049)
T 3m1i_C 168 VFDF--SAEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQ--GSSSSLIVATLESLLRYLHWIPYRYIYETNILELLST 242 (1049)
T ss_dssp HHTS--CTTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT
T ss_pred HHHh--cchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHH
Confidence 9653 34445667888999999996 99999999999985 3568899999999999999999999888999999996
Q ss_pred HHHhcCCChhHHhHHHHHHHHHHhcCCCcc-----hhhh-Hhhh-hh-hhh-hhc-------cc--cCCcchHHHHHHHH
Q 001968 242 LILADGLPEQFRGAAVGCVLAVVSKRMDPQ-----SKLN-LLQT-LQ-ISR-VFG-------LV--SEDGESELVSKVAA 303 (989)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~-----~k~~-li~~-l~-l~~-~~~-------~~--~~~~d~~~~~~~~~ 303 (989)
.+. ++++++.+|++||++|+++++++. .++. ++.. ++ +.. ++. .+ ..++|.++.+.+|+
T Consensus 243 ~~l---~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~ 319 (1049)
T 3m1i_C 243 KFM---TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1049)
T ss_dssp HHH---HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHH
T ss_pred HhC---CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHH
Confidence 554 279999999999999999987664 1221 1111 11 111 111 11 24567889999999
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHH
Q 001968 304 LLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQIL 383 (989)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll 383 (989)
+++.++..+.+.+... +.. .+.+..++++++.+..+++.+....+++||..+...+.+.+.....+++++.+++
T Consensus 320 ~~~~~~~~~~~~~~~~--~~~----~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv 393 (1049)
T 3m1i_C 320 FLTTYLARNRALLESD--ESL----RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLR 393 (1049)
T ss_dssp HHHHHHHHHHHHHHSC--GGG----HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--hhh----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 9999988877765431 111 1456778889988887764333336778887776643112334456789999999
Q ss_pred HHHHHHcccCccccccccccccCC-------hhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCCh
Q 001968 384 EVILTQIRYDPMYRNNLDVLDKIG-------IEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNV 456 (989)
Q Consensus 384 ~~l~~k~~~p~~~~~~~~~~~~~~-------~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w 456 (989)
.+++.+|+||+|.+ |.++++ .+|+++ .++|+.++++++.++.+.+..+++++.+.+.+.+++ +..+|
T Consensus 394 ~~ll~~m~~~ed~~----~~~dd~~e~~r~~~~d~d~-~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~-~~~~W 467 (1049)
T 3m1i_C 394 LVIIENMVRPEEVL----VVENDEGEIVREFVKESDT-IQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG-SEWSW 467 (1049)
T ss_dssp HHHHHTCCCCTTCC----EEECTTSCEEECSSCCHHH-HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS-SSCCH
T ss_pred HHHHHhcCCCccee----eeeCCCCcchHhhhccchH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCC-CCCCH
Confidence 99999999987643 322111 112222 367889999999999999999999999999888753 35789
Q ss_pred hHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCC-----CCCchHHHHHHHHHHhhHhhhhhccCchHHHH
Q 001968 457 EEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPC-----HSNRLVALVYLETVTRYMKFIQEHTQYIPVVL 531 (989)
Q Consensus 457 ~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~-----~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl 531 (989)
+.+||++++++++++++.... .+..++++++.++. ++. ++||.++..++.++|||++|+..||+++++++
T Consensus 468 ~~~eaal~algsia~~~~~~~---e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl 542 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDT---EKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVI 542 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCchh---hHHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999886541 12357888877763 222 36788864455599999999999999999999
Q ss_pred HHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch--------hhHHHHHHHhHhhhhccccCCcccccCCCCcchhHH
Q 001968 532 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--------PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHI 603 (989)
Q Consensus 532 ~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~--------p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 603 (989)
+++++ ++++++++|+.+||++|.+||++|+..+. ||+++|++.+..++... +.++...+
T Consensus 543 ~~ll~--~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~-----------~~~~~~~~ 609 (1049)
T 3m1i_C 543 LKLFE--FMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-----------QPQQVHTF 609 (1049)
T ss_dssp HHHHH--HTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-----------CHHHHHHH
T ss_pred HHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhC-----------CHHHHHHH
Confidence 99998 99988999999999999999999999886 99999999999887642 13567889
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCC-chhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcC
Q 001968 604 FEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNP-EESTAKFANIQQIIMAINALSKGFNERLVTSSRP 682 (989)
Q Consensus 604 ~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~ 682 (989)
|||+|.+++..+ +++.+.+++..++.|++++|++++++.....+ ..+.+....+..++.++++++++++..+ .|
T Consensus 610 ~eai~~ii~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f----~p 684 (1049)
T 3m1i_C 610 YKACGIIISEER-SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF----YP 684 (1049)
T ss_dssp HHHHHHHHHTCC-SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGG----HH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHH----HH
Confidence 999999999865 56789999999999999999998865432101 1122233344455566666655555432 12
Q ss_pred chHHHHHHHHHHHHHHhhc-------CC----CCh--hHhHHHHHHHHHHH-------hhhcccccCchHHHHHHHHccC
Q 001968 683 AIGLMFKQTLDVLLQILVV-------FP----KVE--PLRCKVTSFIHRMV-------DTLGASVFPYLPKALEQLLAES 742 (989)
Q Consensus 683 ~~~~~~~~~~~~~~~~l~~-------~~----~~~--~i~e~~~~~~~~~~-------~~l~~~~~p~l~~l~~~ll~~~ 742 (989)
.+..++.+++.++...... -+ ..+ .....+...+.+++ ++++..+.||+|++++.++..|
T Consensus 685 ~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~ 764 (1049)
T 3m1i_C 685 QLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDY 764 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554433221100 00 000 01111222222222 3334445689999999888876
Q ss_pred Ch----hHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001968 743 EP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIA 818 (989)
Q Consensus 743 ~~----~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~ 818 (989)
.. .+.+.++++++.++.++|..+.+++..++..+++++++++++ +++++||++++||.|+++++
T Consensus 765 ~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~------------~~~~~pd~~~~~f~ll~~i~ 832 (1049)
T 3m1i_C 765 MNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK------------DFTEYPEHRVEFYKLLKVIN 832 (1049)
T ss_dssp HHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS------------CSSSSHHHHHHHHHHHHHHH
T ss_pred HhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc------------chhhCHHHHHHHHHHHHHHH
Confidence 32 122669999999999999889999999999999999999974 22478999999999999999
Q ss_pred hcCCCccc-cCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhh
Q 001968 819 THDLSSVF-LSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLY 897 (989)
Q Consensus 819 ~~~~~~~~-~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (989)
.+|+..++ +++. .+..++..++.+. +|+|+.+.++|+++|.++++.+....+.+....++.+|+...+ .. .+.
T Consensus 833 ~~~~~~l~~~~~~---~~~~v~~~~~~al-~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~-~~-~~~ 906 (1049)
T 3m1i_C 833 EKSFAAFLELPPA---AFKLFVDAICWAF-KHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFV-SE-TFF 906 (1049)
T ss_dssp HHCTHHHHHSCHH---HHHHHHHHHHHHH-TCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHH-HH-HHH
T ss_pred HhCHHHHHcCCHH---HHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HH-HHH
Confidence 99988776 3433 2344444433322 8999999999999999999998742111112223333332221 11 122
Q ss_pred hccCCCCCcccchhhHhHHHHHHHHHHHHH------------------------HHhHHHHHHHHHhcCCCCCCCHHHHH
Q 001968 898 SVLDKSFEFGDANTLVLFGEIVLAQKVMYE------------------------KFGNDFLVHFVTKGFPSAHCPPDLAE 953 (989)
Q Consensus 898 ~~~~~~f~~~d~~~~~~~~ei~~~l~~~~~------------------------~~~~~~l~~~~~~~~P~~~~~~~~~~ 953 (989)
. +.|..++.-+...+.+++.+.. .+-.+|+..++...|| ++++++++
T Consensus 907 ~-------l~~~~h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~ 977 (1049)
T 3m1i_C 907 V-------LTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--HLTSEQIA 977 (1049)
T ss_dssp H-------HHSTTCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCT--TSCHHHHH
T ss_pred H-------HhcchHhhhHHHHHHHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCC--CCCHHHHH
Confidence 2 2344455566677777776543 2334566666667789 88999999
Q ss_pred HHHHHhcc--CChhHHHHHHHHHHHHHHhhcc
Q 001968 954 QYCQKLQG--NDIKALKSFYQSLIEKLRVQQN 983 (989)
Q Consensus 954 ~f~~~l~~--~~~~~f~~~~~~f~~~~r~~~~ 983 (989)
.|+++|+. .|..+||+++|||++++|++++
T Consensus 978 ~f~~~l~~~~~~~~~f~~~~rdf~~~~~~~~~ 1009 (1049)
T 3m1i_C 978 SFLSALTKQYKDLVVFKGTLRDFLVQIKEVGG 1009 (1049)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhHhhhhhcC
Confidence 99999988 5777899999999999999987
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=4.8e-60 Score=602.66 Aligned_cols=600 Identities=15% Similarity=0.246 Sum_probs=471.2
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhc-cCCchHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS-LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERN 80 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~-~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~ 80 (989)
+++++++..+|+|. +|++.|++|+++|+++|++|++|..+..+|. .+.++++|+||+++|+++|+++|..+++++|.
T Consensus 11 ~~l~~~l~~~~~p~--~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPN--STQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHhCCC--CChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 35889999999985 5889999999999999999999999999887 55668999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 001968 81 LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDD 160 (989)
Q Consensus 81 ~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~E 160 (989)
.||+.+++++.+... .....+++||+|+|++++.|++++||++||++++++++.+++++..+++.+.+|..|+|
T Consensus 89 ~Ir~~ll~~l~~~~~------~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 89 YLKNSVMELIANGTL------NILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHSSC------CTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999886410 00125799999999999999999999999999999999998888889999999999999
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------cCCHHHHHHHHHHhhccccc
Q 001968 161 ELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYR----------------SSDFEVCTGVLDCMRRYISW 224 (989)
Q Consensus 161 ev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~----------------~~~~~l~~~~L~~l~~~i~w 224 (989)
|+.+++. ....|++.+++.|+++ ++.|+..+.+++.... ..+++++..+|+|+.+|++|
T Consensus 163 ev~~~~~----~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 163 DVVTFQT----LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHTSCC----SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHccccc----hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 9966532 2237888999999997 9999999999987531 12356889999999999999
Q ss_pred cccccccccc--cHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhh---hhhhhcccc-------CC
Q 001968 225 IDINLIANDA--FIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ---ISRVFGLVS-------ED 292 (989)
Q Consensus 225 i~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~---l~~~~~~~~-------~~ 292 (989)
++++.+.+.. ++++++..+. ++++|.+|++||++|+++++++.++..++..++ +..++.... ++
T Consensus 238 i~~~~i~~~~~~ll~~l~~~l~----~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e 313 (1204)
T 3a6p_A 238 VSMSHITAENCKLLEILCLLLN----EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE 313 (1204)
T ss_dssp SCHHHHHTTTSHHHHHHHHGGG----CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCH
T ss_pred cCHHHHHhccchHHHHHHHHcC----CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCcc
Confidence 9999887654 8999887653 689999999999999999988877777776653 334444321 45
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCCh
Q 001968 293 GESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLK 372 (989)
Q Consensus 293 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (989)
+|.++.+++|++++++|.++...+....... ..+.+..++++++.++.|++.+....+++||..++.... ....
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~----~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~--~~~~ 387 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQLCALLGADSDVE----TPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI--LSRD 387 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC----CCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT--TTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc--cccc
Confidence 5788999999999999988776554211000 003567899999999999865555477888887775321 1123
Q ss_pred HHHhHhHHHHHHHH---HHHcccCcccccc-cccc---ccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 001968 373 EEQRLHAGQILEVI---LTQIRYDPMYRNN-LDVL---DKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLA 445 (989)
Q Consensus 373 ~~~~~~~~~ll~~l---~~k~~~p~~~~~~-~~~~---~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~ 445 (989)
..+.+++.+|++++ +.||+||++.+.. .+|. ++.++|++++|.+||++++++++.++.+.|..++.++.+.+.
T Consensus 388 ~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~ 467 (1204)
T 3a6p_A 388 PLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLK 467 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46788999999999 8899999865421 1122 111233457899999999999999999999999988887775
Q ss_pred HhhcCC----------------------CCCChhHHHHHHHHHHHhcccCchhhhhcc--cccHHHHHHHHHhCCCCCCC
Q 001968 446 NAVTFS----------------------ADRNVEEVEAALTLLYALGESMSEEAMRTG--AGHLSELVPMLLQTKLPCHS 501 (989)
Q Consensus 446 ~~~~~~----------------------~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~--~~~l~~ll~~ll~~~~~~~~ 501 (989)
..+.+. .+..|...|+.++.+.++++++.....+.. ...++++++.++. + ...
T Consensus 468 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~--~-~~~ 544 (1204)
T 3a6p_A 468 YQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN--F-DTK 544 (1204)
T ss_dssp HHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH--C-CCS
T ss_pred HHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh--C-CCC
Confidence 554321 134689999999999999888832110011 1346788887763 2 125
Q ss_pred CchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCC------------CCchhhhhHHHHHHHHHHHhhhcchhh
Q 001968 502 NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHH------------PNVHVSRRASYLFMRVVKLLKAKLVPF 569 (989)
Q Consensus 502 ~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~------------~~~~v~~~A~~al~~l~~~~~~~l~p~ 569 (989)
||.+....+.++|+|.+|+..||++++++|++++. ++.+ .+..|+.+||++|.+||++|+..|.||
T Consensus 545 ~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~--~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~ 622 (1204)
T 3a6p_A 545 DPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFS--SVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPN 622 (1204)
T ss_dssp CHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHH--HHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred ChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH--hhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 77775445557999999999999999999999997 5433 234799999999999999999999999
Q ss_pred HHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHH
Q 001968 570 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQT 638 (989)
Q Consensus 570 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~ 638 (989)
+++|.+.+..++.....+ +..++..++||++.+....+ +.+++..+++.++.|++++|++
T Consensus 623 ~~~i~~~~~~~l~~~~~l--------~~~e~~~L~eal~~ia~~~~-~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 623 FDMLYNHVKQLLSNELLL--------TQMEKCALMEALVLISNQFK-NYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHSTTTS--------CHHHHHHHHHHHHHHHGGGC-CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCcccc--------cHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999888633201 23578999999998843333 6678888899999999999984
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.8e-36 Score=379.07 Aligned_cols=709 Identities=15% Similarity=0.195 Sum_probs=485.3
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc--CCchHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL--CNIVQVQFWCLQTLSEVVRVKYTSMSSEER 79 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~--~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~ 79 (989)
+++.+++...++| |++.|++|+++|++++++|++|..+..++.. +.++++|++|+..||+.|+++|..++++.|
T Consensus 13 ~~l~~~l~~~~s~----d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~ 88 (852)
T 4fdd_A 13 QQILQLLKESQSP----DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 88 (852)
T ss_dssp HHHHHHHHHHTCS----CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHH
T ss_pred HHHHHHHHHHhCc----CHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 4677888888887 9999999999999999999999999999984 556799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHH
Q 001968 80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSL 158 (989)
Q Consensus 80 ~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l 158 (989)
..+|+.+++.+.. .++.||++++.+++.|+++++|..||++++.+.+.+++++ ...+..+.+|..+
T Consensus 89 ~~ik~~ll~~l~~-------------~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i 155 (852)
T 4fdd_A 89 DFIKSECLNNIGD-------------SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKI 155 (852)
T ss_dssp HHHHHHHHTTTTC-------------SSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999987542 4568999999999999999999999999999999998754 5677889999989
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccccccccccc-ccccHH
Q 001968 159 DDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIA-NDAFIP 237 (989)
Q Consensus 159 ~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~-~~~~l~ 237 (989)
.++.... .. .. .+.. .++.++..+...+ .+.+++++..+++++..++...+-.... -+++++
T Consensus 156 ~~~~~~~------~~---~~----~~~~-~~~~il~~l~~~l---~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~ 218 (852)
T 4fdd_A 156 CEDSAEI------LD---SD----VLDR-PLNIMIPKFLQFF---KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIE 218 (852)
T ss_dssp HHHHTTH------HH---HC----SSSS-CHHHHHHHHTTTT---TCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHH
T ss_pred HHHhHHH------hc---hh----hhcc-hHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8887321 00 00 0000 0333343333333 3567899999999999887653321110 124556
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 001968 238 LLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVK 317 (989)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~ 317 (989)
.++..+. .+++++|..|++||..++... + +. +.
T Consensus 219 ~l~~~~~--d~~~~vr~~a~~~L~~l~~~~--~-~~---~~--------------------------------------- 251 (852)
T 4fdd_A 219 NLFALAG--DEEPEVRKNVCRALVMLLEVR--M-DR---LL--------------------------------------- 251 (852)
T ss_dssp HHHHHHT--CCCHHHHHHHHHHHHHHHHHC--H-HH---HG---------------------------------------
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHHHHhC--H-HH---HH---------------------------------------
Confidence 6666554 246677777777777665431 0 00 00
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCcccc
Q 001968 318 RLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYR 397 (989)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~ 397 (989)
+++..+++.++..+.+++.+....+.+||..+.. .........+++..++..++.+|.|++++.
T Consensus 252 ------------~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~----~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 252 ------------PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAE----QPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp ------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT----STTHHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred ------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 1122233444444443332222234455444321 111112235678889999999999875432
Q ss_pred ccccccccC--Chh-HHHH--HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhccc
Q 001968 398 NNLDVLDKI--GIE-EEDR--MVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGES 472 (989)
Q Consensus 398 ~~~~~~~~~--~~~-~~~~--f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~ 472 (989)
.|.+++ +++ |++. ....|+.....+..++...++.+++.+.+.+...+.+ .+|+.+++++.+++.++++
T Consensus 316 ---~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~---~~~~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 316 ---ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH---HEWVVKESGILVLGAIAEG 389 (852)
T ss_dssp ---HHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHTTTT
T ss_pred ---HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhc
Confidence 122111 111 1111 1235888888888888776677777777777777654 6899999999999999999
Q ss_pred CchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh--ccCchHHHHHHhhcccCCCCCCchhhhh
Q 001968 473 MSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--HTQYIPVVLAAFLDERGIHHPNVHVSRR 550 (989)
Q Consensus 473 ~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~--~~~~L~~vl~~l~~~~~l~~~~~~v~~~ 550 (989)
+... + ...++++++.++. ...++++.|+...+.++|+|++|+.. +..++..+++.++. ++.++++.||..
T Consensus 390 ~~~~-~---~~~l~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~--~L~d~~~~vr~~ 461 (852)
T 4fdd_A 390 CMQG-M---IPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK--RILDSNKRVQEA 461 (852)
T ss_dssp THHH-H---GGGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH--HHTCSSHHHHHH
T ss_pred chHH-H---HHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH--HHhCCCHHHHHH
Confidence 8752 2 2467788887763 34578899965555599999999965 46889999999997 888888999999
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHH
Q 001968 551 ASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLT 630 (989)
Q Consensus 551 A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~ 630 (989)
||.+|..+|+.+++.+.||++.++..+...+.... ......++++++.++...+ +.-.+.+|+..+++
T Consensus 462 a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~-----------~~~~~~~~~ai~~l~~~~~-~~~~~~~~~~~l~p 529 (852)
T 4fdd_A 462 ACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ-----------HKNLLILYDAIGTLADSVG-HHLNKPEYIQMLMP 529 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHG-GGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC-----------hHHHHHHHHHHHHHHHHhh-hhhccHHHHHHHHH
Confidence 99999999999999999999999999988886321 1234557888888886644 23334567777777
Q ss_pred HHHHHHHHHHHhh-----------------hh--------------------------------cCCchhhhHHHHHHHH
Q 001968 631 PLCQQVQTMLLDA-----------------KM--------------------------------LNPEESTAKFANIQQI 661 (989)
Q Consensus 631 pl~~~l~~~~~~~-----------------~~--------------------------------~~~~~~~~~~~~i~~~ 661 (989)
++++.|..+.... +. ..++++... ....
T Consensus 530 ~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~---~~~~ 606 (852)
T 4fdd_A 530 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF---MIVA 606 (852)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHH---HHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchH---HHHH
Confidence 7776554321100 00 000000000 1122
Q ss_pred HHHHhhhccCCCCCCcCCCcCchHHHH--HHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHH
Q 001968 662 IMAINALSKGFNERLVTSSRPAIGLMF--KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLL 739 (989)
Q Consensus 662 l~~i~~i~k~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll 739 (989)
+.+++.++++++. ++.+++ .++++.+...+. ..+..+|+.+..+++.++..+|.++.||++.+++.+.
T Consensus 607 l~~l~~l~~~l~~--------~~~~~~~~~~~~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~ 676 (852)
T 4fdd_A 607 LDLLSGLAEGLGG--------NIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG 676 (852)
T ss_dssp HHHHHHHHHHHGG--------GGHHHHHTCCHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhH--------hHHHHhcCCcHHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444432 233443 355666655553 3457899999999999999999999999999999888
Q ss_pred ccCChh---HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 001968 740 AESEPK---EMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHV 816 (989)
Q Consensus 740 ~~~~~~---~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~ 816 (989)
..++.. .....++.++.++...|.++.+++..++++++ .+++... .+..+++.....+++
T Consensus 677 ~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~----~~l~~~~-------------~~~~~~~~a~~~igr 739 (852)
T 4fdd_A 677 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV----EIINRPN-------------TPKTLLENTAITIGR 739 (852)
T ss_dssp HTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHH----HHHTCSS-------------CCHHHHHHHHHHHHH
T ss_pred HHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH----HHhCCCC-------------CCchHHHHHHHHHHH
Confidence 877432 22467788999999999888888887777664 4444310 123578888999999
Q ss_pred HHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 817 IATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 817 ~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
+...++..+ . +++..++..+.....+..|.+-+.+|+..+..++..-
T Consensus 740 l~~~~~~~~--~----~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~ 786 (852)
T 4fdd_A 740 LGYVCPQEV--A----PMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 786 (852)
T ss_dssp HHHHCHHHH--G----GGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHhCHHHh--C----ccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhC
Confidence 999875432 2 3567777766655545566777888999999999873
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=1.7e-36 Score=382.76 Aligned_cols=729 Identities=12% Similarity=0.122 Sum_probs=455.2
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhhcC------CC
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYT------SM 74 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~w~------~l 74 (989)
+++.+++....+| |++.| |+++|++++++|++|..+.+++.+. .+.++|++|+.+||++|+++|. .+
T Consensus 5 ~~l~~~L~~~~sp----d~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 5 ETVAKFLAESVIA----STAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp HHHHHHHHHTTSG----GGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred HHHHHHHHHhcCC----CHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 3566677666665 67677 9999999999999999999999764 3468999999999999999998 89
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHH
Q 001968 75 SSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCR 153 (989)
Q Consensus 75 ~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~ 153 (989)
++++|..||+.+++.+.+. ++.||+++|.+++.|++++||++||++++++++.+++++ ......|.
T Consensus 79 ~~~~k~~ik~~ll~~l~~~-------------~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~ 145 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISL-------------PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLT 145 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHS-------------CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999998863 489999999999999999999999999999999997654 56777888
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C-------HHHHHHHHHHhhccccc
Q 001968 154 VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSS--D-------FEVCTGVLDCMRRYISW 224 (989)
Q Consensus 154 iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~--~-------~~l~~~~L~~l~~~i~w 224 (989)
+|..++++... .+ ++.+ .+..++..+... ++.++++|..+.+..... + .++...+++++.+ +.|
T Consensus 146 ~l~~i~~~~~~-~~-~~~~---~~~~l~~~l~~~-~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~-l~~ 218 (960)
T 1wa5_C 146 VAHSIFKRWRP-LF-RSDE---LFLEIKLVLDVF-TAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYD-FNC 218 (960)
T ss_dssp HHHHHHGGGTT-SC-CCHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHH-hh-cChH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 88888775411 01 1211 123566667775 787777776553322111 1 1233445666644 223
Q ss_pred cccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcc----hHHHHH
Q 001968 225 IDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGE----SELVSK 300 (989)
Q Consensus 225 i~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d----~~~~~~ 300 (989)
.+......+. ....+..+..++.... | ....-.++++ ....+.
T Consensus 219 ~~~~~~~~~~------------------~~~~~~~~~~~l~~~~-p--------------~~~~d~d~~~~~~~~~vk~~ 265 (960)
T 1wa5_C 219 QDIPEFFEDN------------------IQVGMGIFHKYLSYSN-P--------------LLEDPDETEHASVLIKVKSS 265 (960)
T ss_dssp SCCCHHHHHT------------------HHHHHHHHHHHHSCCS-C--------------CCC------CCCHHHHHHHH
T ss_pred ccchHHHHHH------------------HHHHHHHHHHHHcCCC-C--------------cccCCcccccccHHHHHHHH
Confidence 2222111100 0011122222222100 0 0000000011 112233
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcC---cccc--hhcHHHHHHHHHHHhccCCCChHHH
Q 001968 301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNC---EVDT--TFSIVQFLSGYVATMKSLSPLKEEQ 375 (989)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 375 (989)
+++.++ .+.+.+... + .+++..+++.++..+... ..++ ...++.||...+.. +.....+
T Consensus 266 ~~~~l~----~l~~~~~~~----f----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~----~~~~~~~ 329 (960)
T 1wa5_C 266 IQELVQ----LYTTRYEDV----F----GPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI----PKYFEIF 329 (960)
T ss_dssp HHHHHH----HHHHHCHHH----H----HHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS----HHHHGGG
T ss_pred HHHHHH----HHHHHHHHH----H----HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc----HhHHHHH
Confidence 333333 333322110 0 135556677776666421 2222 12566777665421 1111223
Q ss_pred h--HhHHHHH-HHHHHHcccCccccccccccccCC-----hhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Q 001968 376 R--LHAGQIL-EVILTQIRYDPMYRNNLDVLDKIG-----IEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANA 447 (989)
Q Consensus 376 ~--~~~~~ll-~~l~~k~~~p~~~~~~~~~~~~~~-----~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~ 447 (989)
+ +++.+++ ..++..|+|++++.+ .|.++.+ +.|++++.+.|++..++++.++...++.+++.+.+.+.+.
T Consensus 330 ~~~~~l~~li~~~i~~~m~~~~~d~e--~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~ 407 (960)
T 1wa5_C 330 NNESAMNNITEQIILPNVTLREEDVE--LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGF 407 (960)
T ss_dssp CSHHHHHHHHHHTHHHHHSCCGGGTT--TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHhcCCCHHHHH--HHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 3 7899999 688889999766432 2322100 1123445678999999999999888877776666666555
Q ss_pred hc---CCCCCChhHHHHHHHHHHHhcccCchhh--hhc--ccccHHHH-----HHHHHhCCCCCCCCchHHHHHHHHHHh
Q 001968 448 VT---FSADRNVEEVEAALTLLYALGESMSEEA--MRT--GAGHLSEL-----VPMLLQTKLPCHSNRLVALVYLETVTR 515 (989)
Q Consensus 448 ~~---~~~~~~w~~~Ea~l~~l~~i~e~~~~~~--~~~--~~~~l~~l-----l~~ll~~~~~~~~~~~v~~~~~~~lg~ 515 (989)
++ +.+..+|+.+||+++++++++++..... .+. ....+.++ ++.+- + +...||.|+..++.++|+
T Consensus 408 l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~-~--~~~~~p~vr~~a~~~lg~ 484 (960)
T 1wa5_C 408 VDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT-S--NNIPHIILRVDAIKYIYT 484 (960)
T ss_dssp HHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH-C--SSCSCHHHHHHHHHHHHH
T ss_pred HHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc-C--CCCCCceehHHHHHHHHH
Confidence 43 1124689999999999999987642110 110 00123332 22222 1 112389997666679999
Q ss_pred hHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH-----------hhhcchhhHHHHHHHhHhhhhcc
Q 001968 516 YMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-----------LKAKLVPFIENILQSLQDTIARF 584 (989)
Q Consensus 516 y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~-----------~~~~l~p~~~~il~~l~~~l~~~ 584 (989)
|++|+ +++++..+++.++. ++.++++.|+.+||++|.+||+. ++..+.||++++++.+..++...
T Consensus 485 ~~~~~--~~~~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 485 FRNQL--TKAQLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (960)
T ss_dssp TGGGS--CHHHHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred HHhhC--CHHHHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc
Confidence 99998 56789999999997 88888899999999999999984 35678999999999999988643
Q ss_pred ccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHH
Q 001968 585 TSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMA 664 (989)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 664 (989)
...+. +..+...++++++.++...+ +...+|+..+++++...|+...+. ++++.. .+.++.+
T Consensus 561 ~~~~~------~~~~~e~l~~al~~vv~~~~---~~~~p~~~~l~~~L~~~l~~~~~~------~~~~~~---~~~~~e~ 622 (960)
T 1wa5_C 561 GSSPE------KLAENEFLMRSIFRVLQTSE---DSIQPLFPQLLAQFIEIVTIMAKN------PSNPRF---THYTFES 622 (960)
T ss_dssp CCCHH------HHTSCHHHHHHHHHHHHHHT---TTTGGGHHHHHHHHHHHHHHHTTS------CCCHHH---HHHHHHH
T ss_pred cCCCC------cccccHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHhC------CCCcHH---HHHHHHH
Confidence 10000 01245789999999998743 556678888888888877765321 122222 1346777
Q ss_pred HhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHH--ccC
Q 001968 665 INALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLL--AES 742 (989)
Q Consensus 665 i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll--~~~ 742 (989)
++.++++.++ .....+...+++++..+++... .+..+.+...+..++... +.+.|+++.+++.+. ..+
T Consensus 623 l~~l~~~~~~-------~~~~~~~~~~~p~~~~iL~~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~ 692 (960)
T 1wa5_C 623 IGAILNYTQR-------QNLPLLVDSMMPTFLTVFSEDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVW 692 (960)
T ss_dssp HHHHHHTSCG-------GGHHHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGG
T ss_pred HHHHHhcCCc-------chHHHHHHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHh
Confidence 7887766221 2356788889999999887543 457777888888887776 678889888888777 444
Q ss_pred Ch-hHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 001968 743 EP-KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHD 821 (989)
Q Consensus 743 ~~-~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~ 821 (989)
+. ..++....++...+....+.+.+ +..+++....++... . +| ...|.++..++.+.
T Consensus 693 ~~~~~~~~~~~~L~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~--------------~-~~--~~a~~ll~~i~~~~ 750 (960)
T 1wa5_C 693 ELKGNIPAVTRLLKSFIKTDSSIFPD-----LVPVLGIFQRLIASK--------------A-YE--VHGFDLLEHIMLLI 750 (960)
T ss_dssp CCTTTHHHHHHHHHHHHHHHGGGCSC-----SHHHHHHHHHHHTCT--------------T-TH--HHHHHHHHHHHHHS
T ss_pred cCCCCchhHHHHHHHHHHhChHHHHH-----HHHHHHHHHHHhCCC--------------c-cc--chHHHHHHHHHHHC
Confidence 32 23344455555555554443221 122222222223220 0 22 66799999999887
Q ss_pred CCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 822 LSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 822 ~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
+...| .++++.++..++............+..+.++..+...+
T Consensus 751 ~~~~~-----~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~ 793 (960)
T 1wa5_C 751 DMNRL-----RPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKL 793 (960)
T ss_dssp CHHHH-----GGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-----HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHc
Confidence 65533 34888888887766533333445556666666665444
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.1e-34 Score=360.82 Aligned_cols=707 Identities=13% Similarity=0.136 Sum_probs=485.9
Q ss_pred HHHHHHHHh-hCCCCCCCHHHHHHHHHHHHHHhcC--CchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhh--------
Q 001968 3 DLEKAILFS-FDESGAIDSMLKSQAVNFCQQIKET--PSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVK-------- 70 (989)
Q Consensus 3 ~l~~av~~~-~~p~~~~~~~~r~~A~~~L~~~q~~--~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~-------- 70 (989)
++.+++..+ ++| |++.|++|+++|++++++ |++|..+.+++.++ .++++|++|+++|++.|+++
T Consensus 5 ~l~~~L~~~~~s~----d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 5 EFAQLLENSILSP----DQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp HHHHHHHHHHHCS----SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred HHHHHHHHcccCc----CHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 589999999 887 899999999999999986 89999999999875 45799999999999998654
Q ss_pred ---cCC-CCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCC-
Q 001968 71 ---YTS-MSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKG- 144 (989)
Q Consensus 71 ---w~~-l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~-~Wp~~~~~l~~~~~~~- 144 (989)
|.. ++++++..+|+.+++.+.+ ++..+|++++.+++.|+..+||. .||++++.+++.++++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-------------~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~ 147 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-------------IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ 147 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-------------SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCC-------------CchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC
Confidence 676 9999999999999997653 35778999999999999999995 9999999999999874
Q ss_pred -chhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccc
Q 001968 145 -SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYIS 223 (989)
Q Consensus 145 -~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~ 223 (989)
+..++..+++|..+++++... . | .+... .+.++..+...+... ..+++++..+++|+.+++.
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~-~--------~------~~~~~-~~~ll~~l~~~l~~~-~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQ-S--------Q------ALVSS-SNNILIAIVQGAQST-ETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTT-S--------S------TTGGG-HHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHHcCChh-h--------h------HHHHH-HHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHH
Confidence 467888999999999876210 0 0 12222 667777666666531 1278899999999999998
Q ss_pred cccccccc---ccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHH
Q 001968 224 WIDINLIA---NDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSK 300 (989)
Q Consensus 224 wi~~~~~~---~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~ 300 (989)
|++.+... .+.+++.+...+. .+++++|..|++||..++.+... .+ .
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~---------------~~-----------~-- 260 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYT---------------FM-----------K-- 260 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGG---------------GC-----------H--
T ss_pred HHHHHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH---------------HH-----------H--
Confidence 87633211 1235555555543 24677777777777776653200 00 0
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHHHHHHHHhhcCcccchhcHHHHHHHHHHHhcc----------CC
Q 001968 301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLN-EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKS----------LS 369 (989)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~ 369 (989)
+++. .++++++..+.+.+.+....+..+|..+...... .+
T Consensus 261 -----------------------------~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 311 (861)
T 2bpt_A 261 -----------------------------PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP 311 (861)
T ss_dssp -----------------------------HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred -----------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 0111 1222222222222211112334444433332100 00
Q ss_pred C-ChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhh
Q 001968 370 P-LKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAV 448 (989)
Q Consensus 370 ~-~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~ 448 (989)
. ......+++..++..++..++.+++++ + +++ ...|+...+.+..++...++.+++.+.+.+...+
T Consensus 312 ~~~~~~~~~~~~~il~~ll~~l~~~~~d~------~--d~~-----~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l 378 (861)
T 2bpt_A 312 LQSYNFALSSIKDVVPNLLNLLTRQNEDP------E--DDD-----WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNI 378 (861)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCCCCC-------C--CCC-----CHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccc------c--ccc-----CcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHc
Confidence 0 001234566788888888887654321 0 111 2567788888888876555666677777777766
Q ss_pred cCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc---cC
Q 001968 449 TFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH---TQ 525 (989)
Q Consensus 449 ~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~---~~ 525 (989)
++ .+|+.+|+++++++.+++++..... ...++++++.++. ...++++.|+...+.++|+|++++..+ ++
T Consensus 379 ~~---~~~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~il~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 379 TA---DNWRNREAAVMAFGSIMDGPDKVQR---TYYVHQALPSILN--LMNDQSLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp TC---SSHHHHHHHHHHHHHTSSSSCHHHH---HHHHHHHHHHHHH--GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred CC---CChhHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 54 6799999999999999998863322 2456677777663 234578888644455899999999764 67
Q ss_pred chHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh----hcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchh
Q 001968 526 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK----AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGS 601 (989)
Q Consensus 526 ~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~----~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~ 601 (989)
+++.+++.++. ++.++ +.|+..||++|..+++.|. ..+.||++.++..+...+..... ..+-+.
T Consensus 451 ~~~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~---------~~~vr~ 518 (861)
T 2bpt_A 451 HLPGVVQACLI--GLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN---------EFNARA 518 (861)
T ss_dssp THHHHHHHHHH--HHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC---------GGGHHH
T ss_pred HHHHHHHHHHH--HhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCc---------chHHHH
Confidence 89999999997 78765 8999999999999999986 66789999999999888853211 012366
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHH-HHHHHHHHhhhccCCCCCCcCCC
Q 001968 602 HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSS 680 (989)
Q Consensus 602 ~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~l~~i~~i~k~~~~~~~~~~ 680 (989)
.++++++.++...+ ++..+++..++.+++..|...+........+++...... ...++.+++.++++++..
T Consensus 519 ~a~~al~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----- 590 (861)
T 2bpt_A 519 SAFSALTTMVEYAT---DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS----- 590 (861)
T ss_dssp HHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG-----
T ss_pred HHHHHHHHHHHHcc---hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-----
Confidence 78999999998843 457789999999999888775321000000001011111 234567777777766532
Q ss_pred cCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCC---hhHHHHHHHHHHHH
Q 001968 681 RPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE---PKEMAGFLVLLNQL 757 (989)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~---~~~~~~~L~l~~~l 757 (989)
+.++..++++.+...+.....+ .+++.++.++..++..+|.++.||++.+++.++..++ ..-....+.+++.+
T Consensus 591 ---~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l 666 (861)
T 2bpt_A 591 ---VEPVADMLMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADI 666 (861)
T ss_dssp ---TGGGHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3455667778777777643221 7899999999999999999999999999988776542 22234577888999
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHH
Q 001968 758 ICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDP 837 (989)
Q Consensus 758 i~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~ 837 (989)
+...|..+.+++..+++.++.. +... ..+++++..++..++.++.+....+ .++++.
T Consensus 667 ~~~~~~~~~~~~~~l~~~l~~~----l~~~-------------~~~~~vr~~~~~~l~~l~~~~~~~~------~~~l~~ 723 (861)
T 2bpt_A 667 SNSLEEDFRRYSDAMMNVLAQM----ISNP-------------NARRELKPAVLSVFGDIASNIGADF------IPYLND 723 (861)
T ss_dssp HHHTGGGGHHHHHHHHHHHHHH----HHCT-------------TCCTTHHHHHHHHHHHHHHHHGGGG------HHHHHH
T ss_pred HHHhchhccchHHHHHHHHHHH----hCCc-------------cccHhhhHHHHHHHHHHHHHhhhhH------HHHHHH
Confidence 9999988888888777766543 3321 0125788999999999988653332 346777
Q ss_pred HHHHHHHhhcCCC---C-------hhhhhHHHHHHHHHHHHhh
Q 001968 838 IMQLLLYTSCNHK---D-------YLVRKACVQIFIRLIKDWC 870 (989)
Q Consensus 838 il~~l~~~~~~~~---~-------~~~~k~a~~~l~~~i~~~~ 870 (989)
++..++..+...+ + ..+++.+++.+..++...+
T Consensus 724 ~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 724 IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777766553211 1 3467888899988887765
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4e-30 Score=323.98 Aligned_cols=707 Identities=11% Similarity=0.136 Sum_probs=474.7
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcC--CchHHHHHHHhccC-CchHHHHHHHHHHHHHH-----------h
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKET--PSICRICIEKLSLC-NIVQVQFWCLQTLSEVV-----------R 68 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~--~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I-----------~ 68 (989)
++.+++..+++| |++.|++|+++|++++++ |+.|..+.+++.++ .++.+|++|+.+|++.| .
T Consensus 2 ~l~~~L~~~~s~----d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 2 ELITILEKTVSP----DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp CHHHHHHGGGCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred cHHHHHHHhcCC----CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 688899888887 899999999999999987 88999999999865 35789999999999997 4
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcC-CCChhhHHHHHHhhcCC---
Q 001968 69 VKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYP-LIWSSVFVDFLPQLNKG--- 144 (989)
Q Consensus 69 ~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p-~~Wp~~~~~l~~~~~~~--- 144 (989)
++|..++++.+..+|+.+++.+.+. +..+ ++++.+++.++.+++| ..||++++.+.+.++++
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~~-------------~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~ 143 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGTE-------------TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 143 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTC-------------CSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCC
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCC-------------cHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCC
Confidence 6799999999999999999876532 2345 9999999999999998 79999999999998765
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccc
Q 001968 145 SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISW 224 (989)
Q Consensus 145 ~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~w 224 (989)
+......+++|..+++++.. +.+... .+.++..+...+... ..+++++..+++|+..++.+
T Consensus 144 ~~~r~~al~~l~~l~~~~~~-----------------~~~~~~-~~~ll~~l~~~l~~~-~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 144 EHMKESTLEAIGYICQDIDP-----------------EQLQDK-SNEILTAIIQGMRKE-EPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCH-----------------HHHGGG-HHHHHHHHHHHHSTT-CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhcCH-----------------hhHHhH-HHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 35677889999998887510 013343 777777777766531 12678899999999998887
Q ss_pred cccccccc---cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHH
Q 001968 225 IDINLIAN---DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKV 301 (989)
Q Consensus 225 i~~~~~~~---~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~ 301 (989)
++...... +.+++.++..+. ..++++|..|++||..++..... . + .+
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~---~---~-----~~----------------- 254 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQ---Y---M-----ET----------------- 254 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGG---G---C-----HH-----------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHH---H---H-----HH-----------------
Confidence 65322110 124555555443 24567777777777777654210 0 0 00
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHHHHHHHHhhcCcccchhcHHHHHHHHHHHh-------------cc
Q 001968 302 AALLTGYAMEVLDCVKRLNAENANEASKKLLN-EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATM-------------KS 367 (989)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~ 367 (989)
++. .++++++..+.+++.+....++.||..+.... ..
T Consensus 255 -----------------------------~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 305 (876)
T 1qgr_A 255 -----------------------------YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (876)
T ss_dssp -----------------------------HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -----------------------------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCC
Confidence 011 11222222221111111112233333322210 00
Q ss_pred C--CCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 001968 368 L--SPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLA 445 (989)
Q Consensus 368 ~--~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~ 445 (989)
. .+.....++.+..++..++..+...++.+ + ++ + ...|+.....+..++...++.+++.+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~------~--~~----~-~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~ 372 (876)
T 1qgr_A 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDEND------D--DD----D-WNPCKAAGVCLMLLATCCEDDIVPHVLPFIK 372 (876)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSC------C--TT----C-CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhHHHHHHhhcccccc------c--cc----c-cHHHHHHHHHHHHHHHHCcHhhHHHHHHHHH
Confidence 0 11112233456777777777776432211 0 00 0 2467777888888776655555666666666
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh---
Q 001968 446 NAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--- 522 (989)
Q Consensus 446 ~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~--- 522 (989)
..+.+ .+|+.+++++++++.+++++.++.+. ..++++++.++. ...++++.|+..++.++|+|++++..
T Consensus 373 ~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~---~~~~~~l~~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 373 EHIKN---PDWRYRDAAVMAFGCILEGPEPSQLK---PLVIQAMPTLIE--LMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHH---HHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHccC---CChHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHhCchhcc
Confidence 66544 78999999999999999988743221 355666666552 22457888865556689999999876
Q ss_pred ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh--------------hcchhhHHHHHHHhHhhhhccccCC
Q 001968 523 HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK--------------AKLVPFIENILQSLQDTIARFTSMN 588 (989)
Q Consensus 523 ~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~--------------~~l~p~~~~il~~l~~~l~~~~~~~ 588 (989)
++.+++.+++.++. ++.++ ++|+..|+++|.++++.++ ..+.||++.++..+...+.....
T Consensus 445 ~~~~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~-- 519 (876)
T 1qgr_A 445 NDVYLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG-- 519 (876)
T ss_dssp STTTHHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--
T ss_pred cHHHHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--
Confidence 56899999999997 88764 8999999999999999987 34889999999999888764310
Q ss_pred cccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHH-HHHHHHHhh
Q 001968 589 YASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANI-QQIIMAINA 667 (989)
Q Consensus 589 ~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i-~~~l~~i~~ 667 (989)
. ...-+..++|+++.++...+ .+..+++..++.+++..|...+.........+++.....+ ..++.+++.
T Consensus 520 -~-----~~~~r~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~ 590 (876)
T 1qgr_A 520 -H-----QNNLRSSAYESLMEIVKNSA---KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQN 590 (876)
T ss_dssp -C-----STTHHHHHHHHHHHHHHTCC---STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred -c-----hhhHHHHHHHHHHHHHHHCc---hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHH
Confidence 0 01234568999999999854 3567799999999999888764321110011222221222 345677888
Q ss_pred hccCCC-CCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCC---
Q 001968 668 LSKGFN-ERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE--- 743 (989)
Q Consensus 668 i~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~--- 743 (989)
+++.++ . .+.++..++++.+...+........+++.+..++..++..+|..+.||++.+++.+...+.
T Consensus 591 l~~~~~~~--------~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 591 VLRKVQHQ--------DALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHTTSCHH--------HHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHhChh--------hhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence 877665 2 2445667788888777764322246899999999999999999999999998887765432
Q ss_pred hhH-HHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001968 744 PKE-MAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDL 822 (989)
Q Consensus 744 ~~~-~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~ 822 (989)
... ....+.+++.++...|..+.++++.+++.++. .+...+ .+++++...+..++.++....
T Consensus 663 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~----~l~~~~-------------~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLE----NLGNEN-------------VHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH----HHTCTT-------------SCGGGHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----HhCCcc-------------ccHHhhHHHHHHHHHHHHHhc
Confidence 222 24567889999999998888877777666554 344310 124577888888888877543
Q ss_pred CccccCCCCcCChHHHHHHHHHhhcCCC---C-------hhhhhHHHHHHHHHHHHhhC
Q 001968 823 SSVFLSPKSRGYLDPIMQLLLYTSCNHK---D-------YLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 823 ~~~~~s~~~~~~~~~il~~l~~~~~~~~---~-------~~~~k~a~~~l~~~i~~~~~ 871 (989)
.. | .++++.++..+........ | ..++..+++.+..++...+.
T Consensus 726 ~~-~-----~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~ 778 (876)
T 1qgr_A 726 GE-F-----KKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKG 778 (876)
T ss_dssp GG-G-----GGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hh-H-----HHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33 2 2367777776655442211 1 26777788888888888764
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.91 E-value=2.2e-22 Score=233.34 Aligned_cols=420 Identities=11% Similarity=0.110 Sum_probs=280.6
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc--CCchHHHHHHHhccCC-chHHHHHHHHHHHHHHhhh---------
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKE--TPSICRICIEKLSLCN-IVQVQFWCLQTLSEVVRVK--------- 70 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~--~~~~w~~~~~lL~~~~-~~~vr~fa~~~L~~~I~~~--------- 70 (989)
++.+++..+++| |++.|++|+++|+++++ .|+.|..+.+++.+++ ++.+|++|+.+|++.|+++
T Consensus 2 ~l~~~L~~~~s~----d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 2 ELITILEKTVSP----DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp CHHHHHHHTTCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred cHHHHHHHhcCC----CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 578899888887 89999999999999998 5889999999998754 5799999999999999765
Q ss_pred --cCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCC---
Q 001968 71 --YTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKG--- 144 (989)
Q Consensus 71 --w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~-~Wp~~~~~l~~~~~~~--- 144 (989)
|..++++.+..||+.|++.+.+. +..+ ++++.+++.|+.+++|. .||++++.+++.++++
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~-------------~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~ 143 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTE-------------TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 143 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCC-------------CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCC
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCC-------------Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCC
Confidence 68999999999999999876542 3346 99999999999999995 9999999999999764
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccc
Q 001968 145 SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISW 224 (989)
Q Consensus 145 ~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~w 224 (989)
+...+..+.+|..++++... . .+... .+.++..+...+... ..++.++..+++|+.+++.+
T Consensus 144 ~~~r~~al~~l~~l~~~~~~------~-----------~~~~~-~~~ll~~l~~~l~~~-~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQDIDP------E-----------QLQDK-SNEILTAIIQGMRKE-EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHHHHHHHHHHHSCG------G-----------GTGGG-HHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhCCc------h-----------hhHhH-HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 46788899999999988611 0 02222 566777666776531 12688999999999998876
Q ss_pred ccccccc---ccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHH
Q 001968 225 IDINLIA---NDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKV 301 (989)
Q Consensus 225 i~~~~~~---~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~ 301 (989)
+.-..-. .+.+++.+...+. .+++++|..+++||..++.+... .+ .+.+. .
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~---~~--------~~~~~----~--------- 258 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQ---YM--------ETYMG----P--------- 258 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGG---GC--------TTTTT----T---------
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---HH--------HHHHH----H---------
Confidence 5421100 0113444444332 24667777777777777664310 00 00000 0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHh------ccC-------
Q 001968 302 AALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATM------KSL------- 368 (989)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~------~~~------- 368 (989)
.++++++..+.+.+.+....++.||..+.... .+.
T Consensus 259 --------------------------------~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 259 --------------------------------ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp --------------------------------THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred --------------------------------HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 11111111111111111112223332222210 000
Q ss_pred --CCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 001968 369 --SPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLAN 446 (989)
Q Consensus 369 --~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~ 446 (989)
.+.....++++..++..+++.+...+++. + +++ ...|+...+++..++...++.+++.+.+.+..
T Consensus 307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~----~----~~~-----~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 373 (462)
T 1ibr_B 307 PEHTSKFYAKGALQYLVPILTQTLTKQDEND----D----DDD-----WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKE 373 (462)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC----C----TTC-----CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhhccHHHHHHHHhccccc----c----ccc-----chHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11222234556777777777765332211 0 000 14678888899998887667777777787777
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh---c
Q 001968 447 AVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE---H 523 (989)
Q Consensus 447 ~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~---~ 523 (989)
.+.+ .+|+.+++++++++.+++++....+ ...++++++.++. ...++++.|+...+.++|+|++++.. +
T Consensus 374 ~l~~---~~~~~r~aal~~l~~l~~~~~~~~~---~~~l~~~~~~l~~--~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~ 445 (462)
T 1ibr_B 374 HIKN---PDWRYRDAAVMAFGCILEGPEPSQL---KPLVIQAMPTLIE--LMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (462)
T ss_dssp HTTC---SSHHHHHHHHHHHHHTSSSSCTTTT---CTTTTTHHHHHHH--GGGCSCHHHHHHHHHHHHHHHHHGGGGCCS
T ss_pred HhcC---CChHHHHHHHHHHHHHhcCCcHHHH---HHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 7654 7899999999999999998864322 2355666766652 33467888965556699999999987 4
Q ss_pred cCchHHHHHHhhcccCC
Q 001968 524 TQYIPVVLAAFLDERGI 540 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l 540 (989)
+.+++++++.++. ++
T Consensus 446 ~~~l~~ll~~Ll~--~L 460 (462)
T 1ibr_B 446 DVYLAPLLQCLIE--GL 460 (462)
T ss_dssp TTTHHHHHHHHHC--C-
T ss_pred HHHHHHHHHHHHH--Hh
Confidence 6899999999996 55
No 13
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.85 E-value=1.2e-20 Score=195.70 Aligned_cols=232 Identities=16% Similarity=0.302 Sum_probs=179.0
Q ss_pred CchHHHHHHHHccCCh----hHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHH
Q 001968 729 PYLPKALEQLLAESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQ 804 (989)
Q Consensus 729 p~l~~l~~~ll~~~~~----~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p 804 (989)
.++|++++.++.+|.. .+.+++|++++.++.++|+.+.+.++.++..++++|++||++ |+.++|
T Consensus 69 ~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~------------df~eyP 136 (321)
T 1w9c_A 69 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK------------DFEEYP 136 (321)
T ss_dssp HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSS------------TTTCSH
T ss_pred HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc------------ccccCh
Confidence 4678888888888832 234899999999999999999999999999999999999996 667999
Q ss_pred HHHHHHHHHHHHHHhcCCCccc-cCCCC-cCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchH
Q 001968 805 ELQRTLYTFLHVIATHDLSSVF-LSPKS-RGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGF 882 (989)
Q Consensus 805 d~~~~~~~ll~~~~~~~~~~~~-~s~~~-~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~ 882 (989)
|+|.+||.|+.++..+|++.++ +++.. +.++++++|++ +|+++++..+|++.+.++++.....+ +...++|
T Consensus 137 ehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~-----kH~~r~V~e~gL~il~~ll~n~~~~~--~~~~~Fy 209 (321)
T 1w9c_A 137 EHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAF-----KHTMRNVADTGLQILFTLLQNVAQEE--AAAQSFY 209 (321)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHT-----TCSSHHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHHHHHHhcCh--HHHHHHH
Confidence 9999999999999999999888 55443 55666666666 99999999999999999999996421 3456677
Q ss_pred HHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHH-------------HHHHHhHHHHHHHHHhcCCCCCCCH
Q 001968 883 QSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKV-------------MYEKFGNDFLVHFVTKGFPSAHCPP 949 (989)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~-------------~~~~~~~~~l~~~~~~~~P~~~~~~ 949 (989)
++|+...+.. .+.++....+..+=.....++..+..+... .++.+..+|+..++.+.|| ++++
T Consensus 210 ~~fy~~il~~--if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp--~l~~ 285 (321)
T 1w9c_A 210 QTYFCDILQH--IFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFP--HLQD 285 (321)
T ss_dssp HHHHHHHHHH--HHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCT--TSCH
T ss_pred HHHHHHHHHH--HHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCC--CCCH
Confidence 7777655432 244443333332221112333333322211 1344556788888889999 9999
Q ss_pred HHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhhcc
Q 001968 950 DLAEQYCQKLQG--NDIKALKSFYQSLIEKLRVQQN 983 (989)
Q Consensus 950 ~~~~~f~~~l~~--~~~~~f~~~~~~f~~~~r~~~~ 983 (989)
+|...|++.|++ .|..+||.++|||++++|+++|
T Consensus 286 ~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqiKEf~g 321 (321)
T 1w9c_A 286 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAG 321 (321)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998 6899999999999999999975
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.79 E-value=6.5e-16 Score=200.81 Aligned_cols=669 Identities=13% Similarity=0.136 Sum_probs=389.2
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCC----------chHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcC
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETP----------SICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYT 72 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~----------~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~ 72 (989)
++.+.+..+.+| |++.|.+|.+.|.+.-+.+ ..-......|. +.++++|..|+..|...+.
T Consensus 7 ~l~~lL~~l~s~----d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 7 HISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHhcCCC----CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH----
Confidence 366677776665 9999999988887654433 12233444454 4568999999999988764
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC---------CChhhHHHHHHhhcC
Q 001968 73 SMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL---------IWSSVFVDFLPQLNK 143 (989)
Q Consensus 73 ~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~---------~Wp~~~~~l~~~~~~ 143 (989)
.++++....++..|+..+.+ +...+|+..+.+++.++....+. .|+.+++.++..+..
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d-------------~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~ 144 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLS-------------DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK 144 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTC-------------SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHhcC-------------CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC
Confidence 46666667777777665432 34468999999999997765544 399999999999873
Q ss_pred --CchhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcc
Q 001968 144 --GSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRY 221 (989)
Q Consensus 144 --~~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~ 221 (989)
+.......+.+|..+.+..+.. +... .+.++..+...|. +.++.++..+++|++.+
T Consensus 145 ~~~~~~~~~al~~l~~~~~~~~~~------------------l~~~-~~~ll~~l~~~L~---~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 145 QEDVSVQLEALDIMADMLSRQGGL------------------LVNF-HPSILTCLLPQLT---SPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCSS------------------CTTT-HHHHHHHHGGGGG---CSSHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhHhH------------------HHHH-HHHHHHHHHHHHc---CCcHHHHHHHHHHHHHH
Confidence 3456677888877777654221 0011 3444444444443 45677888888888888
Q ss_pred ccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHH
Q 001968 222 ISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKV 301 (989)
Q Consensus 222 i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~ 301 (989)
+...+-..+ +.+++.+.+.+... .++..|..+++|+..++... + .++
T Consensus 203 ~~~~~~~~~--~~~l~~l~~~L~~~-~~~~~r~~a~~~l~~l~~~~--~-~~~--------------------------- 249 (1230)
T 1u6g_C 203 VMSCGNIVF--VDLIEHLLSELSKN-DSMSTTRTYIQCIAAISRQA--G-HRI--------------------------- 249 (1230)
T ss_dssp TTTC----C--TTHHHHHHHHHHHT-CSSCSCTTHHHHHHHHHHHS--S-GGG---------------------------
T ss_pred HHhcCHHHH--HHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHh--H-HHH---------------------------
Confidence 776543332 34566666666532 22355666666666655421 0 000
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHH
Q 001968 302 AALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQ 381 (989)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 381 (989)
. +++..++|.++..+.+++.+.+..+...+..+...++ ..+.++++.
T Consensus 250 ------------------~---------~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~------~~~~~~l~~ 296 (1230)
T 1u6g_C 250 ------------------G---------EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP------KEVYPHVST 296 (1230)
T ss_dssp ------------------T---------TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT------CCCHHHHHH
T ss_pred ------------------H---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh------HHHHHhHHH
Confidence 0 0112334444444443322222123333333332211 123467788
Q ss_pred HHHHHHHHcccCcccccc--ccccccCCh--hHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChh
Q 001968 382 ILEVILTQIRYDPMYRNN--LDVLDKIGI--EEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVE 457 (989)
Q Consensus 382 ll~~l~~k~~~p~~~~~~--~~~~~~~~~--~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~ 457 (989)
++..+++.++++++...+ .+|.++.++ .++++ .+. . + .........|+
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~-~~~--------------~-~------------~~~~~~d~~~~ 348 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD-QGS--------------D-D------------EYSDDDDMSWK 348 (1230)
T ss_dssp HHHHHTTCCCCC----------------------------------------------------------------CTTH
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccch-hhc--------------c-c------------ccccccccCHH
Confidence 888888888876543100 011000000 00000 000 0 0 00001236799
Q ss_pred HHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh---------------
Q 001968 458 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--------------- 522 (989)
Q Consensus 458 ~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~--------------- 522 (989)
-++++..++..++...+.. -...++.+++.+.. ...+.++.|+...+++++...+-+..
T Consensus 349 vR~~A~~~l~~l~~~~~~~----~~~~~~~l~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 422 (1230)
T 1u6g_C 349 VRRAAAKCLDAVVSTRHEM----LPEFYKTVSPALIS--RFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGE 422 (1230)
T ss_dssp HHHHHHHHHHHHHTTCCTT----HHHHHTTTHHHHHS--TTSCSSSHHHHHHHHHHHHHHHHHCCC------------CC
T ss_pred HHHHHHHHHHHHHHhchhH----HHHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccccc
Confidence 8999998888888754321 12355666666652 23455666643333334333321110
Q ss_pred -----ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCC
Q 001968 523 -----HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGS 597 (989)
Q Consensus 523 -----~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~ 597 (989)
-..+++.+++.+.. .+.++++.+|..++.+|..+++.++..+.||++.++..+...+..... ..
T Consensus 423 ~~~~~~~~~l~~ll~~l~~--~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~---------~~ 491 (1230)
T 1u6g_C 423 TPLTMLQSQVPNIVKALHK--QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS---------SS 491 (1230)
T ss_dssp CHHHHHHHHTTHHHHHHHH--HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS---------CH
T ss_pred chHHHHHHHhhHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCC---------cc
Confidence 02356777777665 677888899999999999999999988899999999999888864310 00
Q ss_pred cchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCc
Q 001968 598 EDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLV 677 (989)
Q Consensus 598 ~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~ 677 (989)
+-+.....+++.++... +++...+|+..++.+++..+ + +. +.+ +. ...+.+++.+++.++...
T Consensus 492 ~v~~~a~~~l~~~~~~~--~~~~~~~~l~~llp~L~~~l----~------d~-~~~-v~--~~al~~l~~l~~~~~~~~- 554 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNH--SPQVFHPHVQALVPPVVACV----G------DP-FYK-IT--SEALLVTQQLVKVIRPLD- 554 (1230)
T ss_dssp HHHHHHHHHHHHHHHSS--CGGGGHHHHTTTHHHHHHHH----T------CS-SHH-HH--HHHHHHHHHHHHHHCCSS-
T ss_pred hHHHHHHHHHHHHHHhC--CHHHHHhHHHHHHHHHHHHH----c------cc-chH-HH--HHHHHHHHHHHHHhcCcc-
Confidence 12334455555555542 35556778888777666432 1 11 111 11 234566676766665411
Q ss_pred CCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCCh--hHHHHHHHHHH
Q 001968 678 TSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP--KEMAGFLVLLN 755 (989)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~--~~~~~~L~l~~ 755 (989)
......+.+++..+++.+...+.....+..+|+.+..+++.++...|+.+.+++|.+++.+...... .+ ...+..++
T Consensus 555 ~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r-~~~~~al~ 633 (1230)
T 1u6g_C 555 QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITR-LTTVKALT 633 (1230)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHH-HHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhH-HHHHHHHH
Confidence 0111246788999999998888655677899999999999999999999999999999988765532 33 23445555
Q ss_pred HHHHHh-hhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCC
Q 001968 756 QLICKF-NTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGY 834 (989)
Q Consensus 756 ~li~~~-~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~ 834 (989)
.++..- +.+..+++..+++.+. ..+.. +.+.+|......+..++.++...+- ...
T Consensus 634 ~i~~~~~~~~~~~~~~~i~~~L~----~~l~~---------------~~~~~r~~a~~al~~l~~~~~~~~~-----~~~ 689 (1230)
T 1u6g_C 634 LIAGSPLKIDLRPVLGEGVPILA----SFLRK---------------NQRALKLGTLSALDILIKNYSDSLT-----AAM 689 (1230)
T ss_dssp HHTTCSSCCCCHHHHHHHHHHHH----HHTTS---------------CCHHHHHHHHHHHHHHHHHCCTTCC-----HHH
T ss_pred HHHhCccccchHHHHHHHHHHHH----HHHHh---------------CCHHHHHHHHHHHHHHHhcccccCC-----HHH
Confidence 554321 2235566666555443 33443 2356889999999999988754331 112
Q ss_pred hHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 835 LDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 835 ~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
+..++..+.... +..|....+.++.++..++...
T Consensus 690 v~~~l~~ll~ll-~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 690 IDAVLDELPPLI-SESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHTTCGGGS-CTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHHhC
Confidence 333333222221 3467777778888888887544
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.74 E-value=1.2e-13 Score=172.30 Aligned_cols=346 Identities=12% Similarity=0.157 Sum_probs=232.2
Q ss_pred CChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc-cCchHHHHH
Q 001968 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLA 532 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~-~~~L~~vl~ 532 (989)
..|.-++++..++..+++..++ ..++.+++.+.. ...++++.++...+.++|..++..... ..+++.+++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~-------~~~~~l~~~l~~--~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD-------ELLPHILPLLKE--LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG-------GGHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 5788889998888888877643 355556655442 112345666433333688887766432 358899999
Q ss_pred HhhcccCCCCCCchhhhhHHHHHHHHHHHhhhc-chhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHH
Q 001968 533 AFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK-LVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLI 611 (989)
Q Consensus 533 ~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li 611 (989)
.++. ++.++++.||..|+.++.++++.+... ..+|+.+++..+...+.... +.-+.....+++.++
T Consensus 404 ~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-----------~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 404 HLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-----------KRVQEAACSAFATLE 470 (852)
T ss_dssp HHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-----------HHHHHHHHHHHHHHH
T ss_pred HHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHH
Confidence 9997 889999999999999999999988753 46788888888877774321 134566777888777
Q ss_pred ccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHH
Q 001968 612 GMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQT 691 (989)
Q Consensus 612 ~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~ 691 (989)
...+ ....+|+..++..+. .+++.. +. .. ...++.+++.+++..++.. .-.+++..+
T Consensus 471 ~~~~---~~l~~~l~~ll~~L~----~~l~~~----~~---~~---~~~~~~ai~~l~~~~~~~~------~~~~~~~~l 527 (852)
T 4fdd_A 471 EEAC---TELVPYLAYILDTLV----FAFSKY----QH---KN---LLILYDAIGTLADSVGHHL------NKPEYIQML 527 (852)
T ss_dssp HHHG---GGGGGGHHHHHHHHH----HHHHHC----CH---HH---HHHHHHHHHHHHHHHGGGG------CCHHHHHHH
T ss_pred HHhh---HhhHhHHHHHHHHHH----HHHHHh----Ch---HH---HHHHHHHHHHHHHHhhhhh------ccHHHHHHH
Confidence 6532 234456555555444 333321 11 11 1123455555554443211 013577788
Q ss_pred HHHHHHHhhcCC-CChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC--------------------ChhHHHHH
Q 001968 692 LDVLLQILVVFP-KVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES--------------------EPKEMAGF 750 (989)
Q Consensus 692 ~~~~~~~l~~~~-~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~--------------------~~~~~~~~ 750 (989)
++.+........ .+..++ .++.++..++..+|..+.||++++++.++... +..-....
T Consensus 528 ~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 888876554433 334554 68999999999999999999999877443221 11223566
Q ss_pred HHHHHHHHHHhhhhhHHHH--HHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Q 001968 751 LVLLNQLICKFNTLVHDIL--DEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLS 828 (989)
Q Consensus 751 L~l~~~li~~~~~~~~~~l--~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s 828 (989)
+.+++.++..+|.++.+++ ..+++.+ +..++. ..+++|++.+.+++.+...+...+
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l----~~~l~~---------------~~~~vr~~a~~~l~~l~~~~~~~~--- 664 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLM----YQCMQD---------------KMPEVRQSSFALLGDLTKACFQHV--- 664 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHH----HHHTTC---------------SSHHHHHHHHHHHHHHHHHCGGGT---
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHH----HHHhCC---------------CChhHHHHHHHHHHHHHHHhhHHH---
Confidence 7899999999999888887 4444433 444442 347899999999999998765433
Q ss_pred CCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhC
Q 001968 829 PKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 829 ~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~ 871 (989)
.++++.++..+.... ++.++.+++.|+..+.++....+.
T Consensus 665 ---~~~l~~~lp~l~~~l-~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 665 ---KPCIADFMPILGTNL-NPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp ---GGGHHHHHHHHHHTC-CTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHHHHc-CccchHHHHHHHHHHHHHHHHhhH
Confidence 447788887776655 667889999999999999887753
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.66 E-value=1.5e-13 Score=172.58 Aligned_cols=353 Identities=12% Similarity=0.103 Sum_probs=228.7
Q ss_pred CCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhh-h-ccCchHHH
Q 001968 453 DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-E-HTQYIPVV 530 (989)
Q Consensus 453 ~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~-~-~~~~L~~v 530 (989)
..+|..+.++..++..+++.+++ ..++.+++.+.. . ..++++.++...+.++|..++... . -..+++.+
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~-------~~~~~~l~~l~~-~-l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~ 409 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED-------DIVPHVLPFIKE-H-IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 409 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG-------GGHHHHHHHHHH-H-TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH-------hhHHHHHHHHHH-H-ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35799999999999999887753 346666665542 1 224566674333347888876653 1 12467888
Q ss_pred HHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc--hhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHH
Q 001968 531 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIG 608 (989)
Q Consensus 531 l~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l--~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~ 608 (989)
++.++. ++.++++.||.+|+.++.++++.+...+ .|+++.++..+...+... +.-+.....+++
T Consensus 410 l~~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~------------~~v~~~a~~al~ 475 (876)
T 1qgr_A 410 MPTLIE--LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE------------PRVASNVCWAFS 475 (876)
T ss_dssp HHHHHH--HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC------------HHHHHHHHHHHH
T ss_pred HHHHHH--HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHH
Confidence 888887 7888899999999999999999988764 589999988888776431 012344555666
Q ss_pred HHHccCC-----------CChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCc
Q 001968 609 LLIGMED-----------VPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLV 677 (989)
Q Consensus 609 ~li~~~~-----------~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~ 677 (989)
.++...+ .+.+...+|+..+++.+. +.+.... .++.. +. ...+.+++.+++..+..
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~----~~l~~~~----~~~~~-~r--~~~~~~l~~l~~~~~~~-- 542 (876)
T 1qgr_A 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLL----ETTDRPD----GHQNN-LR--SSAYESLMEIVKNSAKD-- 542 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHH----HHTTSCS----SCSTT-HH--HHHHHHHHHHHHTCCST--
T ss_pred HHHHHhhhccccccccccccchhhhHhHHHHHHHHH----HHHhCcC----cchhh-HH--HHHHHHHHHHHHHCchh--
Confidence 6654311 001123345555544443 3332211 01111 11 23456667776655431
Q ss_pred CCCcCchHHHHHHHHHHHHHHhhcC--------C-CC----hhHhHHHHHHHHHHHhhhc-ccccCchHHHHHHHHccCC
Q 001968 678 TSSRPAIGLMFKQTLDVLLQILVVF--------P-KV----EPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAESE 743 (989)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~-~~----~~i~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~ll~~~~ 743 (989)
..++...+++.+...+... . .+ ..+++.++.++..++..+| .++.||++.+++.++..+.
T Consensus 543 ------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 616 (876)
T 1qgr_A 543 ------CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616 (876)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHH
Confidence 3455666666665544321 1 11 4567889999999999999 8999999999998887664
Q ss_pred hh-----HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001968 744 PK-----EMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIA 818 (989)
Q Consensus 744 ~~-----~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~ 818 (989)
.. -....+.+++.++...|..+.++++.+++.+... +.. .++++++...+..+..++
T Consensus 617 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~----l~~--------------~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG----LKN--------------YAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----HHH--------------CTTHHHHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HcC--------------cchHHHHHHHHHHHHHHH
Confidence 32 2346778899999988888888888766555433 321 024678999999999888
Q ss_pred hcCCCccccCCCCcCChHHHHHHHHHhhcC-CCChhhhhHHHHHHHHHHHHhhC
Q 001968 819 THDLSSVFLSPKSRGYLDPIMQLLLYTSCN-HKDYLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 819 ~~~~~~~~~s~~~~~~~~~il~~l~~~~~~-~~~~~~~k~a~~~l~~~i~~~~~ 871 (989)
......+ .++++.++..++..... ..+..++..++.++.++....+.
T Consensus 679 ~~~~~~~------~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 679 RALQSNI------IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp HHHGGGG------HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhh------hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 7543222 33566777776655533 14567888999999999887764
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.54 E-value=1.3e-09 Score=136.34 Aligned_cols=373 Identities=12% Similarity=0.123 Sum_probs=224.7
Q ss_pred HHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhh-----ChHHHHHHHHHHHHHh
Q 001968 373 EEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRV-----APEVTQVFIRNSLANA 447 (989)
Q Consensus 373 ~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i-----~~~~~l~~i~~~l~~~ 447 (989)
....+++..++..++..+.-+ . ...|.....++..++.. .+...++.+.+.+...
T Consensus 403 ~~~~~~l~~il~~l~~~l~d~--------------~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~ 462 (861)
T 2bpt_A 403 VQRTYYVHQALPSILNLMNDQ--------------S------LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIG 462 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCS--------------C------HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC--------------c------HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHH
Confidence 345567777777777644311 0 12344444444444332 1223344444545445
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc-cCc
Q 001968 448 VTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQY 526 (989)
Q Consensus 448 ~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~-~~~ 526 (989)
+.+ . ++.++++..++..+.+.+.+.....-..+++.+++.++..--..+.++.++...+++++......... ..+
T Consensus 463 l~~---~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~ 538 (861)
T 2bpt_A 463 LQD---H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET 538 (861)
T ss_dssp HTS---C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHH
T ss_pred hcc---C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHH
Confidence 533 2 78888888888888877642000001246677776655311111233556544445677666554332 233
Q ss_pred hHHHHHHhhc----ccCC-----C----CCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCccccc
Q 001968 527 IPVVLAAFLD----ERGI-----H----HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKE 593 (989)
Q Consensus 527 L~~vl~~l~~----~~~l-----~----~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~ 593 (989)
+..+++.+++ ...+ . +..+.++..++.++..+++.++..+.||++.++..+...+....
T Consensus 539 ~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-------- 610 (861)
T 2bpt_A 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKD-------- 610 (861)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTT--------
T ss_pred HHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCC--------
Confidence 4444444433 1011 1 12345788999999999999999999999999999988876431
Q ss_pred CCCC-cchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCC
Q 001968 594 LSGS-EDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGF 672 (989)
Q Consensus 594 ~~~~-~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~ 672 (989)
. .-+...+.+++.++...+ +...+|+..+++.+...++ .. +. ... ...+.+++.+++.+
T Consensus 611 ---~~~v~~~~~~~l~~l~~~~~---~~~~~~l~~i~~~l~~~l~----~~----~~---~vr---~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 611 ---SAFIEDDVFYAISALAASLG---KGFEKYLETFSPYLLKALN----QV----DS---PVS---ITAVGFIADISNSL 670 (861)
T ss_dssp ---GGGTHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHHHHH----CT----TS---HHH---HHHHHHHHHHHHHT
T ss_pred ---CCcHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhc----cc----cH---HHH---HHHHHHHHHHHHHh
Confidence 1 234566778888877633 4566788887776665552 10 11 111 12345666676665
Q ss_pred CCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCCh------hH
Q 001968 673 NERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP------KE 746 (989)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~------~~ 746 (989)
+. .+.++...+++.+...+..-..+..+|+.+..+++.++...|+.+.||++.+++.++...+. .+
T Consensus 671 ~~--------~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d 742 (861)
T 2bpt_A 671 EE--------DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLE 742 (861)
T ss_dssp GG--------GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHH
T ss_pred ch--------hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 42 35678888888888877642234789999999999999999999999999999988764431 11
Q ss_pred --------HHHHHHHHHHHHHHhhh---hhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHH
Q 001968 747 --------MAGFLVLLNQLICKFNT---LVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIRE-VQELQRTLYTFL 814 (989)
Q Consensus 747 --------~~~~L~l~~~li~~~~~---~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~pd~~~~~~~ll 814 (989)
-...+..++.++...|. .+.+++..++..+.. .+.. .+ .+ +.++|+..+..+
T Consensus 743 ~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~----~~~d-----------~~-~~~~~~vr~~a~~~l 806 (861)
T 2bpt_A 743 ALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQ----VAED-----------PQ-LYSEDATSRAAVGLI 806 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHH----HHHC-----------HH-HHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH----HHcC-----------cc-cCCcHHHHHHHHHHH
Confidence 14566778888877773 344555544443332 2221 01 12 578999999999
Q ss_pred HHHHhcC
Q 001968 815 HVIATHD 821 (989)
Q Consensus 815 ~~~~~~~ 821 (989)
..++...
T Consensus 807 ~~l~~~~ 813 (861)
T 2bpt_A 807 GDIAAMF 813 (861)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 9998865
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.25 E-value=3.9e-09 Score=137.09 Aligned_cols=573 Identities=11% Similarity=0.112 Sum_probs=309.8
Q ss_pred HHHHhhccCCHHHHHHHHHHhhccccc--cccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhh
Q 001968 198 DIVSMYRSSDFEVCTGVLDCMRRYISW--IDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLN 275 (989)
Q Consensus 198 ~iL~~~~~~~~~l~~~~L~~l~~~i~w--i~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~ 275 (989)
.+|....+.+++++..+++-+...+.- ...+.-....+++.+++.+. .+++.+|.+|+.||..++... .+...-.
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~-~~~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSKV-KEYQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTS-CHHHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhC-CHHHHHH
Confidence 344444466788888888777665432 11111112356777777775 368999999999999988642 2211111
Q ss_pred HhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHhhc-Ccccchhc
Q 001968 276 LLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLN-AENANEASKKLLNEVLPSVFYVMQN-CEVDTTFS 353 (989)
Q Consensus 276 li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~ 353 (989)
++. .++..+ .+++.......+..+..+... +.... .... .......++|.++..+.. ++......
T Consensus 87 i~~-----~Ll~~l-~d~~~~vR~~a~~~L~~i~~~----l~~~~~~~~~---~~~~~~~llp~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 87 IVD-----TLCTNM-LSDKEQLRDISSIGLKTVIGE----LPPASSGSAL---AANVCKKITGRLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp HHH-----HHHHHT-TCSSSHHHHHHHHHHHHHHHH----CC-----CCT---HHHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHH-----HHHHHh-cCCcHHHHHHHHHHHHHHHHh----CCCcccccch---HHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 222 122222 233444444444433333221 11000 0000 012456788888887763 43332235
Q ss_pred HHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhCh
Q 001968 354 IVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAP 433 (989)
Q Consensus 354 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~ 433 (989)
.+..+.+.+....+ . ..+++..++..+...+..+ + ...|+.....+..++...+
T Consensus 154 al~~l~~~~~~~~~--~----l~~~~~~ll~~l~~~L~~~--------------~------~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 154 ALDIMADMLSRQGG--L----LVNFHPSILTCLLPQLTSP--------------R------LAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHTCS--S----CTTTHHHHHHHHGGGGGCS--------------S------HHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHhHh--H----HHHHHHHHHHHHHHHHcCC--------------c------HHHHHHHHHHHHHHHHhcC
Confidence 56666665543211 1 1235566666666543210 1 1456666666666655443
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Q 001968 434 EVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETV 513 (989)
Q Consensus 434 ~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~l 513 (989)
+..++.+.+.+...+.+. .+|..+..++.+++.+++.++.. -..+++++++.++.. ..++++.++-.+++++
T Consensus 208 ~~~~~~~l~~l~~~L~~~--~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~l~~~ll~~--l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 208 NIVFVDLIEHLLSELSKN--DSMSTTRTYIQCIAAISRQAGHR----IGEYLEKIIPLVVKF--CNVDDDELREYCIQAF 279 (1230)
T ss_dssp ---CTTHHHHHHHHHHHT--CSSCSCTTHHHHHHHHHHHSSGG----GTTSCTTHHHHHHHH--HSSCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHH
Confidence 322222222222222211 22445556677778787776542 123555666655531 1234555544444456
Q ss_pred HhhHhhhhhc-cCchHHHHHHhhcccCCCC-------------------------------------CCchhhhhHHHHH
Q 001968 514 TRYMKFIQEH-TQYIPVVLAAFLDERGIHH-------------------------------------PNVHVSRRASYLF 555 (989)
Q Consensus 514 g~y~~~l~~~-~~~L~~vl~~l~~~~~l~~-------------------------------------~~~~v~~~A~~al 555 (989)
+.+.+.+... ..|++.+++.++. .+.. ....||..|+.++
T Consensus 280 ~~l~~~~~~~~~~~l~~li~~ll~--~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l 357 (1230)
T 1u6g_C 280 ESFVRRCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL 357 (1230)
T ss_dssp HHHHHCTTCCCHHHHHHHHHHHTT--CCCCC------------------------------------CTTHHHHHHHHHH
T ss_pred HHHHHHChHHHHHhHHHHHHHHHH--HhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHH
Confidence 6665554332 2377888888775 4421 1135788999999
Q ss_pred HHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCCh------------hhHHH
Q 001968 556 MRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPP------------EKQSD 623 (989)
Q Consensus 556 ~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~------------~~~~~ 623 (989)
..++...+..+.|+++.++..+...+.... .+-+...+++++.++...+... .....
T Consensus 358 ~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~-----------~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1230)
T 1u6g_C 358 DAVVSTRHEMLPEFYKTVSPALISRFKERE-----------ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426 (1230)
T ss_dssp HHHHTTCCTTHHHHHTTTHHHHHSTTSCSS-----------SHHHHHHHHHHHHHHHHHCCC------------CCCHHH
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHcCCCc-----------hHHHHHHHHHHHHHHHHhccccccccCccccccccchHH
Confidence 999986555677888888777655543211 1235567888887776432100 01223
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCC
Q 001968 624 YLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFP 703 (989)
Q Consensus 624 ~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 703 (989)
.+..+++.++..+.+.+.. + +.... ...+.+++.+.++.+.. +.+.+.++++.+...+..-.
T Consensus 427 ~~~~~l~~ll~~l~~~l~~------~-~~~vr---~~~~~~L~~l~~~~~~~--------l~~~l~~ll~~l~~~L~d~~ 488 (1230)
T 1u6g_C 427 MLQSQVPNIVKALHKQMKE------K-SVKTR---QCCFNMLTELVNVLPGA--------LTQHIPVLVPGIIFSLNDKS 488 (1230)
T ss_dssp HHHHHTTHHHHHHHHHTTC------S-CHHHH---HHHHHHHHHHHHHSTTT--------TGGGHHHHHHHHHHHTTCSS
T ss_pred HHHHHhhHHHHHHHHHhcc------C-CHHHH---HHHHHHHHHHHHHchhh--------hHHHHHHHHHHHHHHHcCCC
Confidence 4455555555544444321 1 11111 23456667776664332 23456778888887776432
Q ss_pred CChhHhHHHHHHHHHHHhhhccc-ccCchHHHHHHHHccCCh--hHH-HHHHHHHHHHHHHhhh-------hhHHHHHHh
Q 001968 704 KVEPLRCKVTSFIHRMVDTLGAS-VFPYLPKALEQLLAESEP--KEM-AGFLVLLNQLICKFNT-------LVHDILDEV 772 (989)
Q Consensus 704 ~~~~i~e~~~~~~~~~~~~l~~~-~~p~l~~l~~~ll~~~~~--~~~-~~~L~l~~~li~~~~~-------~~~~~l~~~ 772 (989)
....++..++..+..++...|++ +.||++.+++.++...+. ... ...+..++.++..+|. .+.++++.+
T Consensus 489 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~l 568 (1230)
T 1u6g_C 489 SSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 568 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHH
Confidence 24578888999999998888776 677877777776653321 222 4567888999988887 577888877
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccC---------------C--------
Q 001968 773 FPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLS---------------P-------- 829 (989)
Q Consensus 773 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s---------------~-------- 829 (989)
++.++... ...+ ..+++|......++.++.+....+ .. +
T Consensus 569 l~~ll~~l----~~~d-------------~~~~vr~~a~~~lg~L~~~~g~~~-~~~~~~~l~~L~~~l~~e~~r~~~~~ 630 (1230)
T 1u6g_C 569 FTCTIKRL----KAAD-------------IDQEVKERAISCMGQIICNLGDNL-GSDLPNTLQIFLERLKNEITRLTTVK 630 (1230)
T ss_dssp HHHHHHHH----SCSS-------------SCHHHHHHHHHHHHHHHHHTGGGC-CTHHHHHHHHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHH----hccC-------------CCHHHHHHHHHHHHHHHHHhCchh-hhhHHHHHHHHHHHhccchhHHHHHH
Confidence 77665443 2210 235677777777777776542221 10 0
Q ss_pred ------------CCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhh
Q 001968 830 ------------KSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWC 870 (989)
Q Consensus 830 ------------~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~ 870 (989)
...+++..++..+.... ...++.++..++.++..++...+
T Consensus 631 al~~i~~~~~~~~~~~~~~~i~~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 631 ALTLIAGSPLKIDLRPVLGEGVPILASFL-RKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCccccchHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccc
Confidence 00122333333333322 34677888889999998887764
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.23 E-value=1.8e-08 Score=119.85 Aligned_cols=520 Identities=13% Similarity=0.107 Sum_probs=285.2
Q ss_pred cCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhh
Q 001968 205 SSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISR 284 (989)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~ 284 (989)
+.++++...+.++++.+...+.... ....+++.+...+. .+++.+|..|+++|..+.... .+ +... .. +.+
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~-~~~~ll~~L~~l~~--~~~~~vR~~a~~~L~~l~~~~-~~-~~~~--~~--l~~ 129 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPE-YVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEH-SP-SDLE--AH--FVP 129 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGG-GGGGGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTS-CH-HHHH--HT--HHH
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHC-CH-HHHH--HH--HHH
Confidence 4567888999999998776653322 12457777766543 357899999999999998643 21 1111 10 112
Q ss_pred hhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHH
Q 001968 285 VFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVAT 364 (989)
Q Consensus 285 ~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 364 (989)
++..+..+++.......+.++..+. .... + .....++|.+..++.+++...+..+...+..+...
T Consensus 130 ~l~~l~~~~~~~~R~~a~~~l~~~~-------~~~~-~-------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~ 194 (588)
T 1b3u_A 130 LVKRLAGGDWFTSRTSACGLFSVCY-------PRVS-S-------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV 194 (588)
T ss_dssp HHHHHHTCSSHHHHHHHGGGHHHHT-------TTSC-H-------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHH-------HhcC-H-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 2222223334444333333222211 1111 0 13346677777777665544333444555444432
Q ss_pred hccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHH
Q 001968 365 MKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRV-APEVTQVFIRNS 443 (989)
Q Consensus 365 ~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i-~~~~~l~~i~~~ 443 (989)
+.. . .....++..+...+. | ++ ...|......+..++.. .++...+.+.+.
T Consensus 195 ~~~-----~---~~~~~l~~~l~~~~~---d-----------~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 246 (588)
T 1b3u_A 195 LEL-----D---NVKSEIIPMFSNLAS---D-----------EQ------DSVRLLAVEACVNIAQLLPQEDLEALVMPT 246 (588)
T ss_dssp SCH-----H---HHHHTHHHHHHHHHT---C-----------SC------HHHHTTHHHHHHHHHHHSCHHHHHHHTHHH
T ss_pred hcH-----H---hHHHHHHHHHHHHhc---C-----------Cc------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 111 1 122333333333211 0 01 14566556666666554 444444555555
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc
Q 001968 444 LANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH 523 (989)
Q Consensus 444 l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~ 523 (989)
+.....+ .+|+.++++..+++.+++.+..+. ..+.+++.+.. ...++++.|+....+.+|++.+.+...
T Consensus 247 l~~~~~d---~~~~vR~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 247 LRQAAED---KSWRVRYMVADKFTELQKAVGPEI------TKTDLVPAFQN--LMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTC---SSHHHHHHHHHTHHHHHHHHCHHH------HHHTHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHccC---CCHHHHHHHHHHHHHHHHHhCccc------chhHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 5555543 789999999999999988765431 12233333331 113567777655555788887766432
Q ss_pred ---cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcch
Q 001968 524 ---TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 600 (989)
Q Consensus 524 ---~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~ 600 (989)
..+++.+++.+.. .+.++++.||..|+.++..+++.++... ..+.++..+...+.... .+-+
T Consensus 316 ~~~~~~~~~l~p~l~~--~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~-----------~~Vr 380 (588)
T 1b3u_A 316 CRENVIMSQILPCIKE--LVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDEC-----------PEVR 380 (588)
T ss_dssp THHHHHHHTHHHHHHH--HHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSC-----------HHHH
T ss_pred hhhhHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCc-----------hHHH
Confidence 1345666666665 5667889999999999999998876532 12333333444443211 1335
Q ss_pred hHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 001968 601 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSS 680 (989)
Q Consensus 601 ~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~ 680 (989)
...+++++.++...+ .+. +...+++.+. ..+. +. +.+.. ...+.+++.+++.++...
T Consensus 381 ~~a~~~l~~l~~~~~--~~~---~~~~~lp~l~----~~~~------d~-~~~vr---~~~~~~l~~l~~~~~~~~---- 437 (588)
T 1b3u_A 381 LNIISNLDCVNEVIG--IRQ---LSQSLLPAIV----ELAE------DA-KWRVR---LAIIEYMPLLAGQLGVEF---- 437 (588)
T ss_dssp HHHHTTCHHHHHHSC--HHH---HHHHHHHHHH----HHHT------CS-SHHHH---HHHHHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHHHHHhcC--HHH---HHHHHHHHHH----HHhc------CC-CchHH---HHHHHHHHHHHHHcCHHH----
Confidence 677888888877633 221 2233332222 2221 11 11111 123455666665554321
Q ss_pred cCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC---ChhHHHHHHHHHHHH
Q 001968 681 RPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES---EPKEMAGFLVLLNQL 757 (989)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~---~~~~~~~~L~l~~~l 757 (989)
+ ...+++.+...+. ..+..+|+.+..++..++..+|++. +++.+++.+.... +...-...+.+++.+
T Consensus 438 ---~---~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 438 ---F---DEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp ---C---CHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ---H---HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 0 1245666666554 4567899999999999999998753 3455555554322 221114567788888
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHH
Q 001968 758 ICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDP 837 (989)
Q Consensus 758 i~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~ 837 (989)
...++.+. ++..+++.+ ...+.. ..|++|......+..+........+ . +.
T Consensus 508 ~~~~~~~~--~~~~~~~~l----~~~l~d---------------~~~~Vr~~a~~~l~~l~~~~~~~~~-~-------~~ 558 (588)
T 1b3u_A 508 SEVCGQDI--TTKHMLPTV----LRMAGD---------------PVANVRFNVAKSLQKIGPILDNSTL-Q-------SE 558 (588)
T ss_dssp HHHHHHHH--HHHHTHHHH----HHGGGC---------------SCHHHHHHHHHHHHHHGGGSCHHHH-H-------HH
T ss_pred HHhcCHHH--HHHHHHHHH----HhhCCC---------------CCchHHHHHHHHHHHHHHHhchhhh-H-------HH
Confidence 87777642 344444433 344442 3478999999999988765322211 1 22
Q ss_pred HHHHHHHhhcCCCChhhhhHHHHHHHHH
Q 001968 838 IMQLLLYTSCNHKDYLVRKACVQIFIRL 865 (989)
Q Consensus 838 il~~l~~~~~~~~~~~~~k~a~~~l~~~ 865 (989)
++..+... .+.+|+.++..|...+..+
T Consensus 559 ~~p~l~~l-~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 559 VKPILEKL-TQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHH-TTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCchhHHHHHHHHHHHh
Confidence 33333332 3678999999998887654
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.11 E-value=4.8e-08 Score=116.23 Aligned_cols=445 Identities=12% Similarity=0.087 Sum_probs=249.0
Q ss_pred CHHHHHHHHHHHHHHhcCCc---hHHHHHHHh---ccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 001968 19 DSMLKSQAVNFCQQIKETPS---ICRICIEKL---SLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCC 92 (989)
Q Consensus 19 ~~~~r~~A~~~L~~~q~~~~---~w~~~~~lL---~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~ 92 (989)
++..|+.|-+.|.++-..-. .+.....++ ..+.+..+|..|+.++.... ..++...+ +.++..+..
T Consensus 100 ~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~----~~~~~~~~----~~l~~~l~~ 171 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCY----PRVSSAVK----AELRQYFRN 171 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHT----TTSCHHHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH----HhcCHHHH----HHHHHHHHH
Confidence 67788888888877665321 232222222 12345678888887776643 33554444 444444443
Q ss_pred hhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCC
Q 001968 93 ELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-IWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRT 170 (989)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~-~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~ 170 (989)
.. ......||...+.++..++...-++ .++.+++.+...++... ......+..|..+.+.+..
T Consensus 172 l~---------~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------ 236 (588)
T 1b3u_A 172 LC---------SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ------ 236 (588)
T ss_dssp HH---------TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH------
T ss_pred Hh---------CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH------
Confidence 31 1246789999999999996532211 24677777777766543 4445556666666554311
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCCh
Q 001968 171 ADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPE 250 (989)
Q Consensus 171 ~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~ 250 (989)
. . ..+.++..+...+. +.+..++..+.++++......+.+. ..+.+++.+.+.+.+ +++
T Consensus 237 -~----------~----~~~~~~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d--~~~ 295 (588)
T 1b3u_A 237 -E----------D----LEALVMPTLRQAAE---DKSWRVRYMVADKFTELQKAVGPEI-TKTDLVPAFQNLMKD--CEA 295 (588)
T ss_dssp -H----------H----HHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHHHHHHCHHH-HHHTHHHHHHHHHTC--SSH
T ss_pred -H----------H----HHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHhCccc-chhHHHHHHHHHhCC--CcH
Confidence 0 0 02333333333333 4567888899999888776543322 224678888888763 678
Q ss_pred hHHhHHHHHHHHHHhcCCCcchhh-hHhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 001968 251 QFRGAAVGCVLAVVSKRMDPQSKL-NLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASK 329 (989)
Q Consensus 251 ~~~~~a~~~l~~i~~~~~~~~~k~-~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (989)
.+|..|+.++..++.... +..+. ..... +.+.+..+..+.+.......+..+..++..+.+ +
T Consensus 296 ~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~--l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--------~------ 358 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLS-ADCRENVIMSQ--ILPCIKELVSDANQHVKSALASVIMGLSPILGK--------D------ 358 (588)
T ss_dssp HHHHHHHHHHHHHHHTSC-TTTHHHHHHHT--HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--------H------
T ss_pred HHHHHHHHHHHHHHHHhC-hhhhhhHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--------h------
Confidence 999999999999987532 21110 11111 111111222344555555444433222211100 0
Q ss_pred HHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChh
Q 001968 330 KLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIE 409 (989)
Q Consensus 330 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~ 409 (989)
.....++|.++.++.+++.+....+...+..+...+.. . .+...++..+...+. +. +
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----~---~~~~~~lp~l~~~~~---d~----~-------- 415 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-----R---QLSQSLLPAIVELAE---DA----K-------- 415 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-----H---HHHHHHHHHHHHHHT---CS----S--------
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-----H---HHHHHHHHHHHHHhc---CC----C--------
Confidence 12345677777777765433222333333333322110 0 122333333333211 10 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHH
Q 001968 410 EEDRMVEYRKDLLVLLRSVGR-VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 488 (989)
Q Consensus 410 ~~~~f~~~R~~l~~~l~~i~~-i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~l 488 (989)
...|......+..++. +.++...+.+.+.+...+.. ..|.-+++++.+++.+++.+... ..++.+
T Consensus 416 -----~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~------~~~~~l 481 (588)
T 1b3u_A 416 -----WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKE------WAHATI 481 (588)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHHCHH------HHHHHT
T ss_pred -----chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhCch------hHHHHH
Confidence 1346666666666654 23332233444555555543 67889999998888888776543 124455
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc
Q 001968 489 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 566 (989)
Q Consensus 489 l~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l 566 (989)
++.+.. ...++++.++..+++++|..++.+.... +++.+++.+.. .+.++++.||..++.+|.++++.++...
T Consensus 482 lp~l~~--~~~~~~~~~R~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 482 IPKVLA--MSGDPNYLHRMTTLFCINVLSEVCGQDI-TTKHMLPTVLR--MAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHHHHH--TTTCSCHHHHHHHHHHHHHHHHHHHHHH-HHHHTHHHHHH--GGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHH--HhhCCCHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHh--hCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 565552 2345666776666678888888776543 66777777776 7778889999999999999998776543
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.20 E-value=4.8e-05 Score=87.04 Aligned_cols=284 Identities=9% Similarity=0.071 Sum_probs=162.1
Q ss_pred ChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHhhHhhhhhccC---chHH
Q 001968 455 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHS--NRLVALVYLETVTRYMKFIQEHTQ---YIPV 529 (989)
Q Consensus 455 ~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~--~~~v~~~~~~~lg~y~~~l~~~~~---~L~~ 529 (989)
++..+|+++.+++.+.+...... ....++.+++.+.. ...++ ++.|+...+++++....++..+.+ +...
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~--~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 217 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQ--GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF 217 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGG---TGGGHHHHHHHHHH--HHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchh---hHhHHHHHHHHHHH--HhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 78999999999998887663321 12345555555442 11223 566755554567765555553321 1122
Q ss_pred HHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHH-HHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHH
Q 001968 530 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE-NILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIG 608 (989)
Q Consensus 530 vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~ 608 (989)
+++.+.. .+.++++.+|..++.+|..+++.+...+.||++ .+++.+...+.... .+-+...++.++
T Consensus 218 l~~~l~~--~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~v~~~a~~~l~ 284 (462)
T 1ibr_B 218 IMQVVCE--ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-----------DEVALQGIEFWS 284 (462)
T ss_dssp HHHHHHH--HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-----------HHHHHHHHHHHH
T ss_pred HHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----------hHHHHHHHHHHH
Confidence 3444443 455677899999999999999999988889888 88877665553211 123455566666
Q ss_pred HHHccC------------------CCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhcc
Q 001968 609 LLIGME------------------DVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSK 670 (989)
Q Consensus 609 ~li~~~------------------~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k 670 (989)
.+.... .........++..+++.++ +.+.......++++... . .....+++.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~----~~l~~~d~d~~~~~~~~-r--~~a~~~L~~l~~ 357 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT----QTLTKQDENDDDDDWNP-C--KAAGVCLMLLAT 357 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH----HHTTCCCSSCCTTCCSH-H--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH----HHHHhcccccccccchH-H--HHHHHHHHHHHH
Confidence 655431 0000111123333333222 22221100000111111 1 123466677776
Q ss_pred CCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhc-ccccCchHHHHHHHHccCC--hhHH
Q 001968 671 GFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAESE--PKEM 747 (989)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~ll~~~~--~~~~ 747 (989)
.++. .++..+++.+...+. ..+..+|++++.+++.+..... +.+.++++.+++.++.... ...+
T Consensus 358 ~~~~-----------~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~V 424 (462)
T 1ibr_B 358 CCED-----------DIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424 (462)
T ss_dssp HTTT-----------THHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred hccH-----------HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 6652 234556666666554 4567899999999999987655 3456788888887776542 1222
Q ss_pred -HHHHHHHHHHHHHhhhhh--HHHHHHhHHHH
Q 001968 748 -AGFLVLLNQLICKFNTLV--HDILDEVFPAI 776 (989)
Q Consensus 748 -~~~L~l~~~li~~~~~~~--~~~l~~~~~~l 776 (989)
....+.++.++..++..+ .++++.+++.+
T Consensus 425 r~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456 (462)
T ss_dssp HHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 456788888888877653 34555444443
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.16 E-value=0.0004 Score=87.28 Aligned_cols=305 Identities=13% Similarity=0.176 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 001968 436 TQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTR 515 (989)
Q Consensus 436 ~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~ 515 (989)
+.+++.+.+...+.+..+....-+-+++.+++.+++.++. ..+..+++.++. .+ .++++.|+..++.++.+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-------~~l~~~l~~l~~-~L-~d~~~~V~~~A~~Al~~ 522 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-------AQLIELMPILAT-FL-QTDEYVVYTYAAITIEK 522 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-------HHHHHHHHHHHH-HT-TCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-------HHHHHHHHHHHH-Hh-CCCChhHHHHHHHHHHH
Confidence 3444443333333332223566678888899999988743 246666666553 22 24567775444336776
Q ss_pred hHhhhh-----------hc-cCchHHHHHHhhcccCCCCCC---ch--hhhhHHHHHHHHHHHhhhcchhhHHHHHHHhH
Q 001968 516 YMKFIQ-----------EH-TQYIPVVLAAFLDERGIHHPN---VH--VSRRASYLFMRVVKLLKAKLVPFIENILQSLQ 578 (989)
Q Consensus 516 y~~~l~-----------~~-~~~L~~vl~~l~~~~~l~~~~---~~--v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 578 (989)
+.+... .+ ..|++.+++.++. .+.... ++ ....+.+++.+++..++..+.||++.+++.+.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~--ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~ 600 (960)
T 1wa5_C 523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIA--LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI 600 (960)
T ss_dssp HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH--HHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHH
T ss_pred HHhcccccccccccccHHHhhhhHHHHHHHHHH--HHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 665321 11 4689999998886 444320 11 45788999999999999999999999999988
Q ss_pred hhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHH
Q 001968 579 DTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANI 658 (989)
Q Consensus 579 ~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i 658 (989)
..+..... ++. .+.-..+++|++|.++.+ ..++....+.+.+++++..-+ +... .+-.+...++
T Consensus 601 ~~l~~~~~-~~~-----~~~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL----~~~~----~~~~~~~~~i 664 (960)
T 1wa5_C 601 EIVTIMAK-NPS-----NPRFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVF----SEDI----QEFIPYVFQI 664 (960)
T ss_dssp HHHHHHTT-SCC-----CHHHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHH----HTTC----TTTHHHHHHH
T ss_pred HHHHHHHh-CCC-----CcHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHH----Hhhh----HhhHHHHHHH
Confidence 87764211 000 012245689999999998 345666667666665444333 2211 1111122222
Q ss_pred HHHHHHHhhhccCCCCCCcC--------C--CcCchHHHHHHHH--------------HHHHHHhhcCCCChhHhHHHHH
Q 001968 659 QQIIMAINALSKGFNERLVT--------S--SRPAIGLMFKQTL--------------DVLLQILVVFPKVEPLRCKVTS 714 (989)
Q Consensus 659 ~~~l~~i~~i~k~~~~~~~~--------~--~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~i~e~~~~ 714 (989)
.+. +....+++++.... . ..+...+...+++ +.+..++.....+....+.++.
T Consensus 665 ~~~---l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ 741 (960)
T 1wa5_C 665 IAF---VVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFD 741 (960)
T ss_dssp HHH---HHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHH
T ss_pred HHH---HHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcccchHHH
Confidence 222 22222444432100 0 0001111111111 1122222211111112356888
Q ss_pred HHHHHHhhhccc-ccCchHHHHHHHHccCC---hhHHH-HHHHHHHHHHHHhhhh-hHHHHH
Q 001968 715 FIHRMVDTLGAS-VFPYLPKALEQLLAESE---PKEMA-GFLVLLNQLICKFNTL-VHDILD 770 (989)
Q Consensus 715 ~~~~~~~~l~~~-~~p~l~~l~~~ll~~~~---~~~~~-~~L~l~~~li~~~~~~-~~~~l~ 770 (989)
++..++..+|.+ +.||+|.+++.++...+ ..+.. .++.+++.++..|+.+ +.+.++
T Consensus 742 ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 803 (960)
T 1wa5_C 742 LLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFID 803 (960)
T ss_dssp HHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999988888 89999999999887642 23333 6778888888888876 455554
No 23
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.11 E-value=0.012 Score=74.15 Aligned_cols=189 Identities=11% Similarity=0.110 Sum_probs=113.8
Q ss_pred HHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHH
Q 001968 660 QIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLL 739 (989)
Q Consensus 660 ~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll 739 (989)
..+.++|++++-+... + .++..+++.+...+. ..++.+++.++.++++..+..+.||++.+++.+.
T Consensus 525 ~a~~~l~~~~~~l~~~------~---~~l~~vl~~l~~~l~-----~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~ 590 (971)
T 2x1g_F 525 TALETMGSYCNWLMEN------P---AYIPPAINLLVRGLN-----SSMSAQATLGLKELCRDCQLQLKPYADPLLNACH 590 (971)
T ss_dssp HHHHHHHHTHHHHC-------------CHHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC------H---HHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3456777777655431 1 345566666666552 5688999999999999999999999999998776
Q ss_pred ccC-----ChhHHHHHHHHHHHHHHHhh-hhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 001968 740 AES-----EPKEMAGFLVLLNQLICKFN-TLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTF 813 (989)
Q Consensus 740 ~~~-----~~~~~~~~L~l~~~li~~~~-~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~l 813 (989)
... +......++..++.++...+ .+..+++..++.++++..-..+++.. . +++ ..+-...+.+.
T Consensus 591 ~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~------~-~~~---~~~~~~~~l~~ 660 (971)
T 2x1g_F 591 ASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADS------K-TPA---ARIRTIFRLNM 660 (971)
T ss_dssp HHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC----------CHH---HHHHHHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC------C-Chh---hHHHHHHHHHH
Confidence 532 34455566777777777654 45778888888888887766655420 0 111 11222334555
Q ss_pred HHHHHhcCCCcc-------ccCCCCcCChHHHHHHHHHhhcCC-CChhhhhHHHHHHHHHHHHhhCC
Q 001968 814 LHVIATHDLSSV-------FLSPKSRGYLDPIMQLLLYTSCNH-KDYLVRKACVQIFIRLIKDWCAR 872 (989)
Q Consensus 814 l~~~~~~~~~~~-------~~s~~~~~~~~~il~~l~~~~~~~-~~~~~~k~a~~~l~~~i~~~~~~ 872 (989)
+..++..--..+ |..+.-.++++.++..+....... .+..+.+.++.++.+++...+.+
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~ 727 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS 727 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh
Confidence 555544211100 000111334444555444333233 36788999999999999988653
No 24
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.05 E-value=0.0096 Score=73.94 Aligned_cols=205 Identities=14% Similarity=0.212 Sum_probs=114.8
Q ss_pred CCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHH
Q 001968 543 PNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQS 622 (989)
Q Consensus 543 ~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~ 622 (989)
.+..||.+++.+|.|+....+..+.|+++.++..+..... ..+......-+|.+|..-+ .+..
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~--------------~~e~~~fL~l~~qli~~f~---~~~~ 775 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSID--------------MNELVDVLSFISQLIHIYK---DNMM 775 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCC--------------TTTHHHHHHHHHHHHHHTT---TTSH
T ss_pred CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4678999999999999999999999999999998874322 1234556677888887743 3388
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHH-HHHHhhhcc-CCCCCCcCCCcCchHHHHHHHHHHHHHHhh
Q 001968 623 DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQI-IMAINALSK-GFNERLVTSSRPAIGLMFKQTLDVLLQILV 700 (989)
Q Consensus 623 ~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-l~~i~~i~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 700 (989)
+.+..++.|++++.-+.+++....++ ..+....+.+. ...+..+.+ ++.+-.... .-.+.+..++..+.....
T Consensus 776 ~~l~~ll~~l~~~if~~l~~~~~~td--~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~---~n~~~l~~~l~~l~~~a~ 850 (980)
T 3ibv_A 776 EITNRMLPTLLMRIFSSLSAAPQGTD--DAVKQNDLRKSYISFILQLLNKGFGSILFTE---ENQVYFDPLINSILHFAN 850 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----CC--HHHHHHHHHHHHHHHHHHHHHTTCTGGGGSH---HHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHHHHHHHHHhCCchhhhcCC---cchHHHHHHHHHHHHHhc
Confidence 89999999999999888876543222 11211222222 334444433 333221110 012234555554444333
Q ss_pred cCCCChhHhHHHHHHHHHHHhhhcc-cccCchHH----HHHHHHc-----cCChhH------HHHHHHHHHHHHHHhhhh
Q 001968 701 VFPKVEPLRCKVTSFIHRMVDTLGA-SVFPYLPK----ALEQLLA-----ESEPKE------MAGFLVLLNQLICKFNTL 764 (989)
Q Consensus 701 ~~~~~~~i~e~~~~~~~~~~~~l~~-~~~p~l~~----l~~~ll~-----~~~~~~------~~~~L~l~~~li~~~~~~ 764 (989)
.. .+...+..+..++.+++...|. +..|-... +++.... +|+.++ +.+.-.+...+..+.|++
T Consensus 851 ~~-~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~ 929 (980)
T 3ibv_A 851 LV-GEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDI 929 (980)
T ss_dssp -----CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33 4556677799999999999863 32332222 2221111 233222 345556677777788876
Q ss_pred hHHHHH
Q 001968 765 VHDILD 770 (989)
Q Consensus 765 ~~~~l~ 770 (989)
+..+|.
T Consensus 930 ~~~~l~ 935 (980)
T 3ibv_A 930 YKSYLV 935 (980)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.98 E-value=0.0055 Score=72.11 Aligned_cols=437 Identities=11% Similarity=0.097 Sum_probs=207.7
Q ss_pred CCHHHHHHHHHHHHHHhc-CCchHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 001968 18 IDSMLKSQAVNFCQQIKE-TPSICRICIEKLS---LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~---~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~ 93 (989)
++...|+-+.-++..+-+ .|+.-..+...+. +++++.+|-.|+.+|-+.. +++-...+ +..+.+.
T Consensus 61 ~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l----~~~l~~~ 129 (591)
T 2vgl_B 61 DNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYL----CEPLRKC 129 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHH----HHHHHHH
Confidence 366677777666666544 4443222223232 1345677777766654331 23322233 3333332
Q ss_pred hhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCCh--hhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhc-cCCC
Q 001968 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWS--SVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISL-DYPR 169 (989)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp--~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~-~~~~ 169 (989)
. ....++||.+.+.++..++. ..|+.++ .+++.+...+...+ .+....+..|..+.++-.+. .+.
T Consensus 130 L---------~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~- 198 (591)
T 2vgl_B 130 L---------KDEDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLD- 198 (591)
T ss_dssp S---------SCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCC-
T ss_pred c---------CCCChHHHHHHHHHHHHHHh-hChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchh-
Confidence 1 13578999999999999966 6788887 58888998887544 45555666655544321000 000
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCC
Q 001968 170 TADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLP 249 (989)
Q Consensus 170 ~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~ 249 (989)
.... .+..++ ..+. ..++-....++++++.|..- +.-....+++.+...+. ..+
T Consensus 199 -------------l~~~-~~~~Ll----~~l~---~~~~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l~--~~~ 252 (591)
T 2vgl_B 199 -------------LNPQ-NINKLL----TALN---ECTEWGQIFILDCLSNYNPK---DDREAQSICERVTPRLS--HAN 252 (591)
T ss_dssp -------------CHHH-HHHHHH----HHHH---HCCHHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCSC--SST
T ss_pred -------------ccHH-HHHHHH----HcCC---CCCchHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHc--CCC
Confidence 0000 022222 2222 24555666777777665421 11011234555544444 257
Q ss_pred hhHHhHHHHHHHHHHhcC-CCcchhhh-HhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 001968 250 EQFRGAAVGCVLAVVSKR-MDPQSKLN-LLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEA 327 (989)
Q Consensus 250 ~~~~~~a~~~l~~i~~~~-~~~~~k~~-li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (989)
+.++.+|+.++..+.... ..+ +.++ +...+ ...++ .+.. .|.+..-...+- + ..+....+...
T Consensus 253 ~~V~~ea~~~i~~l~~~~~~~~-~~~~~~~~~~-~~~L~-~L~~-~d~~vr~~aL~~---l-~~i~~~~p~~~------- 317 (591)
T 2vgl_B 253 SAVVLSAVKVLMKFLELLPKDS-DYYNMLLKKL-APPLV-TLLS-GEPEVQYVALRN---I-NLIVQKRPEIL------- 317 (591)
T ss_dssp THHHHHHHHHHHHSCCSCCBTT-BSHHHHHHHT-HHHHH-HHTT-SCHHHHHHHHHH---H-HHHHHHCCSTT-------
T ss_pred hHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHH-HHHHH-HHhc-CCccHHHHHHHH---H-HHHHHhChHHH-------
Confidence 889999999988764311 011 1111 11111 11111 1122 344332111111 1 11221111110
Q ss_pred HHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCC
Q 001968 328 SKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIG 407 (989)
Q Consensus 328 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~ 407 (989)
...+. .++...+.+. .+..-..+.+..+.+... +..++..+...++ + .
T Consensus 318 -----~~~~~---~~~~~~~d~~--~Ir~~al~~L~~l~~~~n--------v~~iv~~L~~~l~---~-----------~ 365 (591)
T 2vgl_B 318 -----KQEIK---VFFVKYNDPI--YVKLEKLDIMIRLASQAN--------IAQVLAELKEYAT---E-----------V 365 (591)
T ss_dssp -----TTCTT---TTSCCTTSCH--HHHHHHHHHHHHTCCSST--------HHHHHHHHHHHTT---S-----------S
T ss_pred -----HHHHH---hheeccCChH--HHHHHHHHHHHHHCChhh--------HHHHHHHHHHHHh---c-----------C
Confidence 00001 0111011111 222222233333322221 2334444333221 1 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHH
Q 001968 408 IEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSE 487 (989)
Q Consensus 408 ~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ 487 (989)
+ .++|+.+...+..++.-.+...-. +.+.+...+.. ..+|-..|+ +..+..+....+.. ....++.
T Consensus 366 d------~~~r~~~v~aI~~la~~~~~~~~~-~v~~Ll~ll~~--~~~~v~~e~-i~~l~~ii~~~p~~----~~~~v~~ 431 (591)
T 2vgl_B 366 D------VDFVRKAVRAIGRCAIKVEQSAER-CVSTLLDLIQT--KVNYVVQEA-IVVIRDIFRKYPNK----YESIIAT 431 (591)
T ss_dssp C------HHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHT--CCHHHHHHH-HHHHHHHHHHSCSS----CCTTHHH
T ss_pred C------HHHHHHHHHHHHHHHHhChhHHHH-HHHHHHHHHcc--cchHHHHHH-HHHHHHHHHHCcch----HHHHHHH
Confidence 1 257888877777777655432222 22233333332 234555555 33444444333321 1234444
Q ss_pred HHHHHHhCCCCCCCCchH--HHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhc
Q 001968 488 LVPMLLQTKLPCHSNRLV--ALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 565 (989)
Q Consensus 488 ll~~ll~~~~~~~~~~~v--~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~ 565 (989)
+... +.....|.+ ++.| ++|+|++++.. -+.+++.+++ .+.+.++.||..+..++.++...++..
T Consensus 432 L~~~-----l~~~~~~~~~~~~~w--ilGey~~~~~~----~~~~l~~l~~--~~~~~~~~vr~~~l~a~~Kl~~~~p~~ 498 (591)
T 2vgl_B 432 LCEN-----LDSLDEPDARAAMIW--IVGEYAERIDN----ADELLESFLE--GFHDESTQVQLTLLTAIVKLFLKKPSE 498 (591)
T ss_dssp HHHT-----TTTCCSHHHHHHHHH--HHHTTCTTCTT----HHHHHHHHST--TCSSSCHHHHHHHHHHHHHHHTTCCST
T ss_pred HHHH-----HHhccCHHHHHHHHH--HHHcccccccC----HHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHhcCchH
Confidence 4432 223445555 3444 89999998864 3566677776 555567889999999999999877654
Q ss_pred chhhHHHHHHH
Q 001968 566 LVPFIENILQS 576 (989)
Q Consensus 566 l~p~~~~il~~ 576 (989)
..+.+..+++.
T Consensus 499 ~~~~i~~ll~~ 509 (591)
T 2vgl_B 499 TQELVQQVLSL 509 (591)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.5e-05 Score=78.03 Aligned_cols=164 Identities=11% Similarity=0.115 Sum_probs=110.7
Q ss_pred CCChhHHHHHHHHHHH-hcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhh-hc-c-CchH
Q 001968 453 DRNVEEVEAALTLLYA-LGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-EH-T-QYIP 528 (989)
Q Consensus 453 ~~~w~~~Ea~l~~l~~-i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~-~~-~-~~L~ 528 (989)
+.+|.++.+++-.+.. +.++++.-.. ....+.+++..|.. .+..++|+.|+...+.++|.+++.+. .. . .|..
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~--~~~~~~~~~~~L~~-~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~ 103 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKS--TSQNYSNLLGIYGH-IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS 103 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCC--TTCCCHHHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCcccc--CcccHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 3899999999999999 8877653210 01223344443331 11146788886666778999999997 44 4 6889
Q ss_pred HHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch-hhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHH
Q 001968 529 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAI 607 (989)
Q Consensus 529 ~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai 607 (989)
.+++.+++ .+.+..+.|+.+|.+++..|++.+.+... +|++.+++.+...+.... +..+......+
T Consensus 104 ~llp~ll~--~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~-----------~~vk~~al~~l 170 (249)
T 2qk1_A 104 LVFTPLLD--RTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKT-----------PQIRMECTQLF 170 (249)
T ss_dssp HHHHHHHH--GGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSS-----------HHHHHHHHHHH
T ss_pred HHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCC-----------hHHHHHHHHHH
Confidence 99999998 77788889999999999999999866332 348888888888775432 23456667777
Q ss_pred HHHHccCCCChhhHHHHH-HHhHHHH
Q 001968 608 GLLIGMEDVPPEKQSDYL-SSLLTPL 632 (989)
Q Consensus 608 ~~li~~~~~~~~~~~~~l-~~ll~pl 632 (989)
+.++...+..+.....++ ..+++.+
T Consensus 171 ~~~~~~~~~~~~~l~~~l~~~iip~l 196 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYLKDEVVPIV 196 (249)
T ss_dssp HHHHHHCCSCSHHHHHHHTTTHHHHH
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 777766431123334555 5554433
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.52 E-value=0.00016 Score=74.46 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=103.1
Q ss_pred CCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc-cCchHHHH
Q 001968 453 DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVL 531 (989)
Q Consensus 453 ~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~-~~~L~~vl 531 (989)
+.+|..+.+++..+..+.++++.- ....+.++++.|.. .+..++++.|....+.++|..+.-+... ..|++.++
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~----~~~~~~~i~~~L~~-~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il 100 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKL----ENGEYGALVSALKK-VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV 100 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSB----CCCCCHHHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCC----CCCCHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 489999999999999888876531 11223455554431 1112467777655566888888777543 35788888
Q ss_pred HHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHH
Q 001968 532 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLI 611 (989)
Q Consensus 532 ~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li 611 (989)
+.++. .+.++++.||..|+.++..+++.+. ++.++..+...+.... +.-+......++.++
T Consensus 101 p~ll~--~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~-----------~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 101 PSLLE--KFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKN-----------PSVKSETALFIARAL 161 (242)
T ss_dssp HHHHH--GGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSC-----------HHHHHHHHHHHHHHH
T ss_pred HHHHH--HHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCC-----------hHHHHHHHHHHHHHH
Confidence 88887 7888889999999999999987652 3455555555554221 234677788888877
Q ss_pred ccCCCChhhHHHHHHHhHHHHHH
Q 001968 612 GMEDVPPEKQSDYLSSLLTPLCQ 634 (989)
Q Consensus 612 ~~~~~~~~~~~~~l~~ll~pl~~ 634 (989)
...+ +......++..++..+..
T Consensus 162 ~~~~-~~~~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 162 TRTQ-PTALNKKLLKLLTTSLVK 183 (242)
T ss_dssp TTCC-GGGCCHHHHHHHHHHHHH
T ss_pred HHcC-CCCccHHHHHHHHHHHHH
Confidence 7642 222334566666555544
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.52 E-value=0.009 Score=67.59 Aligned_cols=366 Identities=9% Similarity=0.038 Sum_probs=176.0
Q ss_pred CCChhh---HHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001968 128 LIWSSV---FVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMY 203 (989)
Q Consensus 128 ~~Wp~~---~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~ 203 (989)
..|++. ++.+++.+++++ ......+..|+.+...- . . .. ++..++. +.++..+...|..
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~--~--~-~~--------~~~~~~~---~~~i~~L~~~L~~- 75 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKE--P--N-PP--------IDEVIST---PGVVARFVEFLKR- 75 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSS--S--S-CC--------HHHHHTS---TTHHHHHHHHHTC-
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--C--C-Cc--------HHHHHHc---CCcHHHHHHHHCC-
Confidence 478877 888888887654 45555666665543210 0 0 00 1112221 0223333344442
Q ss_pred ccCCHHHHHHHHHHhhccccccc--cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhh
Q 001968 204 RSSDFEVCTGVLDCMRRYISWID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ 281 (989)
Q Consensus 204 ~~~~~~l~~~~L~~l~~~i~wi~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~ 281 (989)
..++.+...+..++......-+ ...+.....++.+.+++.+ +++.++..|+.+|..+.... +..+-.++..=.
T Consensus 76 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~ 150 (450)
T 2jdq_A 76 -KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS--EFEDVQEQAVWALGNIAGDS--TMCRDYVLDCNI 150 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCC--HHHHHHHHHCCC
Confidence 2378888888888887655321 1123346788999898864 57999999999999988642 222222222101
Q ss_pred hhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHH
Q 001968 282 ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCV-KRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360 (989)
Q Consensus 282 l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 360 (989)
++.++..+..+.+.+..+..+..+..+. ... +.. . . ......+|.+..++.+++.. +......
T Consensus 151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~----~~~~~~~-~-~------~~~~~~l~~L~~~l~~~~~~----v~~~a~~ 214 (450)
T 2jdq_A 151 LPPLLQLFSKQNRLTMTRNAVWALSNLC----RGKSPPP-E-F------AKVSPCLNVLSWLLFVSDTD----VLADACW 214 (450)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHH----CCSSSCC-C-G------GGTGGGHHHHHHHTTCCCHH----HHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh----CCCCCCC-C-H------HHHHHHHHHHHHHHccCCHH----HHHHHHH
Confidence 2223332333345565555544332222 110 000 0 0 12245677777777654422 2222222
Q ss_pred HHHHhccCCCChHHHhHhH-HHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Q 001968 361 YVATMKSLSPLKEEQRLHA-GQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVF 439 (989)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~-~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~ 439 (989)
.+..+....+ ....... ..++..++..+..+ + .+.|......+.+++.-.+.....+
T Consensus 215 ~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~~--------------~------~~v~~~a~~~L~~l~~~~~~~~~~~ 272 (450)
T 2jdq_A 215 ALSYLSDGPN--DKIQAVIDAGVCRRLVELLMHN--------------D------YKVVSPALRAVGNIVTGDDIQTQVI 272 (450)
T ss_dssp HHHHHTSSSH--HHHHHHHHTTTHHHHHHHTTCS--------------C------HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHCCCc--HHHHHHHHcCcHHHHHHHHCCC--------------c------hhHHHHHHHHHHHHhhCChHHHHHH
Confidence 3333221110 1111110 12333333333211 0 1344555555655554333221111
Q ss_pred ----HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhh-cccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHH
Q 001968 440 ----IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVT 514 (989)
Q Consensus 440 ----i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~-~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg 514 (989)
+.+.+...+.+ .+|.-++.++.+++.++.+.+..... -....++.++..+- ++++.++...+.+++
T Consensus 273 ~~~~~l~~L~~ll~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~------~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 273 LNCSALQSLLHLLSS---PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ------TAEFRTRKEAAWAIT 343 (450)
T ss_dssp HTTTHHHHHHHHTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH------HSCHHHHHHHHHHHH
T ss_pred HHCccHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh------cCCHHHHHHHHHHHH
Confidence 22334444433 57899999999999998765432100 01245666666554 245566433333677
Q ss_pred hhHhhhh-hccCch--HHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh
Q 001968 515 RYMKFIQ-EHTQYI--PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA 564 (989)
Q Consensus 515 ~y~~~l~-~~~~~L--~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~ 564 (989)
..+.... .+-..+ ..+++.|++ .+.++++.++..|+.++.++++.+..
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCD--LLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHH--GGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 6654311 000000 123444443 45556789999999999999987764
No 29
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.52 E-value=0.015 Score=72.97 Aligned_cols=357 Identities=11% Similarity=0.140 Sum_probs=189.1
Q ss_pred CChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc-cCchHHHHH
Q 001968 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLA 532 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~-~~~L~~vl~ 532 (989)
.+..-+.+++++++.+++.+... ...++.+++.++. .+ .+|.|+...+.++.++++-...+ ..|++.+++
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~-----~~~l~~vl~~l~~-~l---~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~ 571 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADH-----PVMINSVLPLVLH-AL---GNPELSVSSVSTLKKICRECKYDLPPYAANIVA 571 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHC-----HHHHTTTHHHHHH-HT---TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHH-Hh---CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45667788888889888766432 2355556665553 22 12566544434566666544433 467888888
Q ss_pred HhhcccCCCC--CCchhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHhHhhhhccccCCcccccCCCCcc---hhHHHHH
Q 001968 533 AFLDERGIHH--PNVHVSRRASYLFMRVVKLLK-AKLVPFIENILQSLQDTIARFTSMNYASKELSGSED---GSHIFEA 606 (989)
Q Consensus 533 ~l~~~~~l~~--~~~~v~~~A~~al~~l~~~~~-~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~---~~~l~ea 606 (989)
.+.. .+.. -....+..+..++..++...+ ....||++.+++-+...+......+ . +++. ....+++
T Consensus 572 ~l~~--~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~-----~~~~~~~~~~~l~~ 643 (963)
T 2x19_B 572 VSQD--VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-P-----NPSNKLAIVHILGL 643 (963)
T ss_dssp HHHH--HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-S-----CHHHHHHHHHHHHH
T ss_pred HHHH--HhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C-----CHHHHHHHHHHHHH
Confidence 7765 3332 234678888888988887664 5667787777766655543211000 0 0112 2356788
Q ss_pred HHHHHccCCCChh-h--------------HHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccC
Q 001968 607 IGLLIGMEDVPPE-K--------------QSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKG 671 (989)
Q Consensus 607 i~~li~~~~~~~~-~--------------~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~ 671 (989)
++.++.+...... . ....+..+...++..+.++++.... + ... ...++.+++++...
T Consensus 644 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~---~~v---~e~~~~~l~~~~~~ 715 (963)
T 2x19_B 644 LSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLN--D---AQV---VEAVCAIFEKSVKT 715 (963)
T ss_dssp HHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTT--C---HHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccC--c---hHH---HHHHHHHHHHHHHh
Confidence 8777766431100 0 0011222333333333344433221 1 111 12334555665555
Q ss_pred CCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhh--cccccCchHHHHHHHHc--------c
Q 001968 672 FNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL--GASVFPYLPKALEQLLA--------E 741 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l--~~~~~p~l~~l~~~ll~--------~ 741 (989)
++.. +.+++..+++.+.......+ .. ..+.+...++..+ ++...|+++.+++.++. .
T Consensus 716 ~~~~--------~~~~l~~~~~~l~~~~~~~~-~~----~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 782 (963)
T 2x19_B 716 LLDD--------FAPMVPQLCEMLGRMYSTIP-QA----SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQG 782 (963)
T ss_dssp SSST--------TGGGHHHHHHHHHHHHHHSC-CH----HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccc--------ccccHHHHHHHHHHHHHcCC-cc----HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhC
Confidence 5532 22334444444444333321 11 2555566666633 33355666665554433 2
Q ss_pred CC-hhHH-HHHHHHHHHHHHHhhhhhHHHHHHh-HHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001968 742 SE-PKEM-AGFLVLLNQLICKFNTLVHDILDEV-FPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIA 818 (989)
Q Consensus 742 ~~-~~~~-~~~L~l~~~li~~~~~~~~~~l~~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~ 818 (989)
+. .+++ ..++.+++.++..+...+.+ ... +..++..+...++. .++++.+..+.++..++
T Consensus 783 ~~~~pd~~~~~f~ll~~~~~~~~~~~~~--~~~~~~~i~~~~~~~l~~---------------~~~~~~~~~l~~l~~l~ 845 (963)
T 2x19_B 783 PRDHPDIVDSFMQLLAQALKRKPDLFLC--ERLDVKAVFQCAVLALKF---------------PEAPTVKASCGFFTELL 845 (963)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHCGGGGGC--TTSCHHHHHHHHHHHTTC---------------SCHHHHHHHHHHHHHHG
T ss_pred cccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCC---------------CCHHHHHHHHHHHHHHH
Confidence 32 2333 46788999999877765421 233 56666666666653 34678889999999998
Q ss_pred hcCCC-ccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHH
Q 001968 819 THDLS-SVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLI 866 (989)
Q Consensus 819 ~~~~~-~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i 866 (989)
..... ..+ ..--..+...++..++....+...+........++..++
T Consensus 846 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~ 893 (963)
T 2x19_B 846 PRCGEVESV-GKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALN 893 (963)
T ss_dssp GGTTSSCHH-HHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHH
T ss_pred hcCCChHHH-HHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHH
Confidence 76431 111 001134677777777766655444444444444454444
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.47 E-value=0.0024 Score=65.57 Aligned_cols=164 Identities=14% Similarity=0.128 Sum_probs=111.3
Q ss_pred chHHHHHHhhcccCCC-CCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHH
Q 001968 526 YIPVVLAAFLDERGIH-HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIF 604 (989)
Q Consensus 526 ~L~~vl~~l~~~~~l~-~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~ 604 (989)
.+..+++.+.. .+. +++..|+..|+.++..+++..++.+.||++.++..+...+.... ..-+....
T Consensus 53 ~~~~i~~~L~~--~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~-----------~~vr~~a~ 119 (242)
T 2qk2_A 53 EYGALVSALKK--VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK-----------PNVVTALR 119 (242)
T ss_dssp CCHHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC-----------HHHHHHHH
T ss_pred CHHHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC-----------HHHHHHHH
Confidence 34677777775 674 78899999999999999999999999999999999988875321 12345667
Q ss_pred HHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCch
Q 001968 605 EAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAI 684 (989)
Q Consensus 605 eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~ 684 (989)
+++..++... + +..+++.+. ..++. .+.... ..++.+++.+...+++. ...
T Consensus 120 ~aL~~~~~~~--~-------~~~ll~~l~----~~l~~-------~~~~vr---~~~l~~l~~~l~~~~~~------~~~ 170 (242)
T 2qk2_A 120 EAIDAIYAST--S-------LEAQQESIV----ESLSN-------KNPSVK---SETALFIARALTRTQPT------ALN 170 (242)
T ss_dssp HHHHHHHTTS--C-------HHHHHHHHH----HHTTC-------SCHHHH---HHHHHHHHHHHTTCCGG------GCC
T ss_pred HHHHHHHHcC--C-------HHHHHHHHH----HHHcC-------CChHHH---HHHHHHHHHHHHHcCCC------Ccc
Confidence 7777776652 2 223333332 22221 112221 13456666655444311 113
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhccc-ccCchHH
Q 001968 685 GLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-VFPYLPK 733 (989)
Q Consensus 685 ~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~-~~p~l~~ 733 (989)
.+.+..+++.+...+. ..+.++|+++..++..+...+|++ +.||++.
T Consensus 171 ~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp HHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 5677888999888874 567899999999999999999986 5676654
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.42 E-value=0.17 Score=59.65 Aligned_cols=440 Identities=14% Similarity=0.113 Sum_probs=210.3
Q ss_pred CHHHHHHHHHHHHHHhc-CCchHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 001968 19 DSMLKSQAVNFCQQIKE-TPSICRICIEKLS---LCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCEL 94 (989)
Q Consensus 19 ~~~~r~~A~~~L~~~q~-~~~~w~~~~~lL~---~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~ 94 (989)
+-..|+-.--++..+-+ +|+--..+...|. .++++.+|-.|+.+|-+.. +++--..+-..+...+.
T Consensus 83 ~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~--- 152 (618)
T 1w63_A 83 KFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLK--- 152 (618)
T ss_dssp SHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHc---
Confidence 66677766666666544 4442223333332 2456788888888887653 22322233333333332
Q ss_pred hcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhH
Q 001968 95 VDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADE 173 (989)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~ 173 (989)
...++||++.+.++..++. ..|+.=+.+++.+...+...+ .+....+..|..+.+. ..
T Consensus 153 ----------~~~~~VRk~A~~al~~l~~-~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~---------~~- 211 (618)
T 1w63_A 153 ----------TSNSYLRKKAALCAVHVIR-KVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER---------SP- 211 (618)
T ss_dssp ----------SCCHHHHHHHHHHHHHHHH-HCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS---------HH-
T ss_pred ----------CCCHHHHHHHHHHHHHHHH-HChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh---------Ch-
Confidence 2468999999999999976 466644456666666665543 4444455554443211 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------ccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHh
Q 001968 174 LTVAARIKDAMRQQCVEQIVRAWYDIVSM-Y-------RSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILA 245 (989)
Q Consensus 174 ~~r~~~l~~~l~~~~~~~i~~~~~~iL~~-~-------~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~ 245 (989)
.....++. .++.++..+.+++.. + ...++-+...++++++.+..--+ + ....+.+++.+.+..
T Consensus 212 -----~~~~~~~~-~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~-~--~~~~~~~~L~~l~~~ 282 (618)
T 1w63_A 212 -----DMLAHFRK-LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD-D--SSEAMNDILAQVATN 282 (618)
T ss_dssp -----HHHHHHHT-THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH-H--HHHTTHHHHHHHHHT
T ss_pred -----HHHHHHHH-HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH-H--HHHHHHHHHHHHHhc
Confidence 01223333 266666665555431 0 02366677788888887654211 1 123456666665531
Q ss_pred c----CCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001968 246 D----GLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNA 321 (989)
Q Consensus 246 ~----~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (989)
. ..+..+...|+.|+..+ ...+..+...+.. +..++ .+.|.+.....-.-++ .+....+
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~l---~~~~~l~~~a~~~--L~~~L----~~~d~~vr~~aL~~L~----~i~~~~p---- 345 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMDI---KSESGLRVLAINI--LGRFL----LNNDKNIRYVALTSLL----KTVQTDH---- 345 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHH--HHHHH----TCSSTTTHHHHHHHHH----HHHHHHH----
T ss_pred cccccchHHHHHHHHHHHHHhc---CCCHHHHHHHHHH--HHHHH----hCCCCchHHHHHHHHH----HHHhhCH----
Confidence 1 01345666666666543 1111111011111 12222 1223332111111111 1111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCcccccccc
Q 001968 322 ENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLD 401 (989)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~ 401 (989)
..+....+.++.++.+++.+.....++ .+..+-+.... ..++..++..+.. .
T Consensus 346 --------~~~~~~~~~i~~~l~d~d~~Ir~~ale----lL~~l~~~~nv----~~iv~eL~~~l~~-------~----- 397 (618)
T 1w63_A 346 --------NAVQRHRSTIVDCLKDLDVSIKRRAME----LSFALVNGNNI----RGMMKELLYFLDS-------C----- 397 (618)
T ss_dssp --------HHHGGGHHHHHHGGGSSCHHHHHHHHH----HHHHHCCSSST----HHHHHHHHHHHHH-------C-----
T ss_pred --------HHHHHHHHHHHHHccCCChhHHHHHHH----HHHHHcccccH----HHHHHHHHHHHHh-------C-----
Confidence 122334445556666555443222333 33333222222 1233333332211 0
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhh
Q 001968 402 VLDKIGIEEEDRMVEYRKDLLVLLRSVGRVA---PEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM 478 (989)
Q Consensus 402 ~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~---~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~ 478 (989)
+ .+||..+...+..++... ...+++.+...+...-......-|. .+..+....++-
T Consensus 398 -----d-------~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~-------~l~~ii~~~p~l-- 456 (618)
T 1w63_A 398 -----E-------PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVP-------NLIQLITNSVEM-- 456 (618)
T ss_dssp -----C-------HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHH-------HHHHHHHHSCST--
T ss_pred -----C-------HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHH-------HHHHHHhcChhH--
Confidence 0 257888888888877643 2344455544444321111111222 122222222211
Q ss_pred hcccccHHHHHHHHHhCCCCCCCCchHH-HHHHHHHHhhHhhhhh-----------ccCchHHHHHHhhcccCCCCCCch
Q 001968 479 RTGAGHLSELVPMLLQTKLPCHSNRLVA-LVYLETVTRYMKFIQE-----------HTQYIPVVLAAFLDERGIHHPNVH 546 (989)
Q Consensus 479 ~~~~~~l~~ll~~ll~~~~~~~~~~~v~-~~~~~~lg~y~~~l~~-----------~~~~L~~vl~~l~~~~~l~~~~~~ 546 (989)
....+..++..+... . ...+.+. +.| ++|.|++.+.. .|..+..++..++. .. ..++.
T Consensus 457 --~~~~v~~L~~~l~~~-~--~~~~~~~~~~w--ilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~-~~~~~ 526 (618)
T 1w63_A 457 --HAYTVQRLYKAILGD-Y--SQQPLVQVAAW--CIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLI--SN-MSTSV 526 (618)
T ss_dssp --HHHHHHHHHHHHHHC-C--SCSHHHHHHHH--HHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHH--ST-TCCHH
T ss_pred --HHHHHHHHHHHHhcc-c--ccHHHHHHHHH--HHhhhHHHhcccccccccccCCCHHHHHHHHHHHHh--cc-CCCHH
Confidence 113455666655432 1 2335553 444 89999998854 23345566666664 22 35678
Q ss_pred hhhhHHHHHHHHHHHhhhcchhhHHHHHH
Q 001968 547 VSRRASYLFMRVVKLLKAKLVPFIENILQ 575 (989)
Q Consensus 547 v~~~A~~al~~l~~~~~~~l~p~~~~il~ 575 (989)
+|..+..++.++...++. ..+.+..++.
T Consensus 527 vr~~~lta~~Kl~~~~~~-~~~~l~~~L~ 554 (618)
T 1w63_A 527 TRGYALTAIMKLSTRFTC-TVNRIKKVVS 554 (618)
T ss_dssp HHHHHHHHHHHHHTTCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 999999999999887653 2344444433
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0017 Score=66.77 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=105.7
Q ss_pred CChhHHHHHHHHHHHhcccCc-hhhhhccc-ccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhcc--CchHH
Q 001968 454 RNVEEVEAALTLLYALGESMS-EEAMRTGA-GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHT--QYIPV 529 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~-~~~~~~~~-~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~--~~L~~ 529 (989)
.+..-+++++.+++.+++++. .. -. .+...+++.++. ...+.++.|+-....++..+.+...... .+++.
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~~----f~~~y~~~llp~ll~--~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ 146 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTPG----FSKDYVSLVFTPLLD--RTKEKKPSVIEAIRKALLTICKYYDPLASSGRNED 146 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTT----SCHHHHHHHHHHHHH--GGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHhccccc----ccHHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHH
Confidence 567778999999999998876 43 23 456667776663 2234556663111114555555442221 24889
Q ss_pred HHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh---hcchhhH-HHHHHHhHhhhhccccCCcccccCCCCcchhHHHH
Q 001968 530 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK---AKLVPFI-ENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE 605 (989)
Q Consensus 530 vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~---~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~e 605 (989)
+++.++. ++.++++.+|..+...+.++++..+ ..+.+|+ +.++..+...+.... .+-+..-++
T Consensus 147 ll~~l~~--~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~-----------~~VR~aA~~ 213 (249)
T 2qk1_A 147 MLKDILE--HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ-----------PAIRTIGFE 213 (249)
T ss_dssp HHHHHHH--HTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS-----------HHHHHHHHH
T ss_pred HHHHHHH--HHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHH
Confidence 9999998 8888899999999999999999987 4688999 999999998886432 234566788
Q ss_pred HHHHHHccCCCChhhHHHHHHHh
Q 001968 606 AIGLLIGMEDVPPEKQSDYLSSL 628 (989)
Q Consensus 606 ai~~li~~~~~~~~~~~~~l~~l 628 (989)
+++.+....+ .+...+++..+
T Consensus 214 ~l~~i~~~vG--~~~~~p~l~~L 234 (249)
T 2qk1_A 214 SFAILIKIFG--MNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHC--SGGGHHHHHHS
T ss_pred HHHHHHHHhC--HHHHHHHHHHH
Confidence 8888877744 23444444443
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.33 E-value=0.014 Score=65.95 Aligned_cols=342 Identities=11% Similarity=0.081 Sum_probs=166.4
Q ss_pred cCCHHHHHHHHHHhhcccc--c-ccccccccc-ccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhh
Q 001968 205 SSDFEVCTGVLDCMRRYIS--W-IDINLIAND-AFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTL 280 (989)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~--w-i~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l 280 (989)
+.++.++..++.+++..++ + -+...+... ..++.+.+.+.. ..++.++..|+.+|..+.... +...-.++..=
T Consensus 31 s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~ 107 (450)
T 2jdq_A 31 SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR-KENCTLQFESAWVLTNIASGN--SLQTRIVIQAG 107 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHSSC--HHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCC--HHHHHHHHhCC
Confidence 5678888889999887654 2 222333444 789999998863 226899999999999988632 11111122110
Q ss_pred hhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhc-CcccchhcHHHHHH
Q 001968 281 QISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQN-CEVDTTFSIVQFLS 359 (989)
Q Consensus 281 ~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~ 359 (989)
.++.++.. ..+++.+..+..+..+..+...- ++.+.. -.-...++.+..++.. ++.+....+...+.
T Consensus 108 ~i~~L~~l-L~~~~~~vr~~a~~~L~~l~~~~---------~~~~~~--~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 108 AVPIFIEL-LSSEFEDVQEQAVWALGNIAGDS---------TMCRDY--VLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp HHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTC---------HHHHHH--HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHH-HcCCCHHHHHHHHHHHHHHccCC---------HHHHHH--HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 12222222 23346666555554433333210 000000 0012456677777764 22222112222222
Q ss_pred HHHHHhccC-CCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Q 001968 360 GYVATMKSL-SPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQV 438 (989)
Q Consensus 360 ~~l~~~~~~-~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~ 438 (989)
.+. ... +... ...+..++..++..+.-+ + .+.|......+.+++...++....
T Consensus 176 ~l~---~~~~~~~~---~~~~~~~l~~L~~~l~~~--------------~------~~v~~~a~~~L~~l~~~~~~~~~~ 229 (450)
T 2jdq_A 176 NLC---RGKSPPPE---FAKVSPCLNVLSWLLFVS--------------D------TDVLADACWALSYLSDGPNDKIQA 229 (450)
T ss_dssp HHH---CCSSSCCC---GGGTGGGHHHHHHHTTCC--------------C------HHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHh---CCCCCCCC---HHHHHHHHHHHHHHHccC--------------C------HHHHHHHHHHHHHHHCCCcHHHHH
Confidence 222 221 1110 111233333444433210 1 134455555666655433222111
Q ss_pred H----HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhh-hcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Q 001968 439 F----IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM-RTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETV 513 (989)
Q Consensus 439 ~----i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~-~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~l 513 (989)
+ +.+.+...+. ..+|.-++.++.+++.++.+.+.... --....++.++..+ .++++.++...+.++
T Consensus 230 ~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll------~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 230 VIDAGVCRRLVELLM---HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL------SSPKESIKKEACWTI 300 (450)
T ss_dssp HHHTTTHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT------TCSSHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHC---CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH------cCCCHHHHHHHHHHH
Confidence 1 1223333333 36899999999998888876543210 00123555555533 234566643333367
Q ss_pred HhhHhhhhh------ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh-hcchhhH-HHHHHHhHhhhhccc
Q 001968 514 TRYMKFIQE------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK-AKLVPFI-ENILQSLQDTIARFT 585 (989)
Q Consensus 514 g~y~~~l~~------~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~-~~l~p~~-~~il~~l~~~l~~~~ 585 (989)
+..+..-.. +...++.++..+- ++++.|+..||+++.+++.... ......+ ..++..+..++....
T Consensus 301 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 374 (450)
T 2jdq_A 301 SNITAGNRAQIQTVIDANIFPALISILQ------TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374 (450)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHh------cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 766542111 1344555555443 4578999999999999998632 2222111 124444444443211
Q ss_pred cCCcccccCCCCcchhHHHHHHHHHHcc
Q 001968 586 SMNYASKELSGSEDGSHIFEAIGLLIGM 613 (989)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~eai~~li~~ 613 (989)
.+-+....++++.++..
T Consensus 375 -----------~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 375 -----------SKIVQVALNGLENILRL 391 (450)
T ss_dssp -----------HHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHh
Confidence 12345566777766654
No 34
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.31 E-value=0.66 Score=58.49 Aligned_cols=113 Identities=9% Similarity=0.174 Sum_probs=76.9
Q ss_pred HHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhccccc--------CchH
Q 001968 661 IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVF--------PYLP 732 (989)
Q Consensus 661 ~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~--------p~l~ 732 (989)
++.++|+.++-+... ...+..+++.+...+. ..+..++.++|.++.++++..+..+. ||++
T Consensus 520 ~~~~lgry~~~~~~~---------~~~l~~vl~~ll~~l~--~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~ 588 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAH---------WNFLRTVILKLFEFMH--ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1049)
T ss_dssp HHHHHHHCHHHHHHC---------HHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred HHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 456677766544321 1456666666665543 33689999999999999988877664 9999
Q ss_pred HHHHHHHc---cCChhHHHHHHHHHHHHHHHhhh--hhHHHHHHhHHHHHHHHHhhc
Q 001968 733 KALEQLLA---ESEPKEMAGFLVLLNQLICKFNT--LVHDILDEVFPAIAGRIFNII 784 (989)
Q Consensus 733 ~l~~~ll~---~~~~~~~~~~L~l~~~li~~~~~--~~~~~l~~~~~~l~~~~~~~l 784 (989)
.+++.+.. .++..+...++..++.++...+. ...+++..+++++.++.-.++
T Consensus 589 ~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 645 (1049)
T 3m1i_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIV 645 (1049)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986644 44555556667778888877663 367778888777766554444
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.24 E-value=0.13 Score=60.39 Aligned_cols=364 Identities=13% Similarity=0.155 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHhhChHHHHH-HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchh-hhhcccccHHHHHHHHH
Q 001968 416 EYRKDLLVLLRSVGRVAPEVTQV-FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE-AMRTGAGHLSELVPMLL 493 (989)
Q Consensus 416 ~~R~~l~~~l~~i~~i~~~~~l~-~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~-~~~~~~~~l~~ll~~ll 493 (989)
..|+.....+..++...|+.+.. -+.+.+...+.+ .+..-+.+|+.+++.+++.-+.. ...-....+..++..+.
T Consensus 136 ~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~ 212 (591)
T 2vgl_B 136 YVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD---SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN 212 (591)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC---SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCC---CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC
Confidence 46777777788888777765432 234556666543 67778888887777666543211 00000123445555443
Q ss_pred hCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHh---hhcchhhH
Q 001968 494 QTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL---KAKLVPFI 570 (989)
Q Consensus 494 ~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~---~~~l~p~~ 570 (989)
..+|.+++..++++++|.. ..++....+++.+.. .+.+.++.|+..|+.++..+.... ...+...+
T Consensus 213 ------~~~~~~q~~il~~l~~l~~---~~~~~~~~~l~~l~~--~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~ 281 (591)
T 2vgl_B 213 ------ECTEWGQIFILDCLSNYNP---KDDREAQSICERVTP--RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL 281 (591)
T ss_dssp ------HCCHHHHHHHHHHHHTSCC---CSHHHHHHHHHHHTT--CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH
T ss_pred ------CCCchHHHHHHHHHHHhCC---CChHHHHHHHHHHHH--HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 2456676555556776652 234456788888887 888888999999999998876432 11111122
Q ss_pred HHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCC---------------ChhhHHHHHHHh-------
Q 001968 571 ENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDV---------------PPEKQSDYLSSL------- 628 (989)
Q Consensus 571 ~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~---------------~~~~~~~~l~~l------- 628 (989)
+.+...+..+.. .. ++-+....++++.++...+. +..-+...++.+
T Consensus 282 ~~~~~~L~~L~~-~d-----------~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 282 KKLAPPLVTLLS-GE-----------PEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp HHTHHHHHHHTT-SC-----------HHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHhc-CC-----------ccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh
Confidence 222222222221 10 12234445555555542110 000111111111
Q ss_pred -HHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChh
Q 001968 629 -LTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEP 707 (989)
Q Consensus 629 -l~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 707 (989)
+..++..+...+.. .+.... ..++.+++.++..++ +....+++.+..++.. ....
T Consensus 350 nv~~iv~~L~~~l~~-------~d~~~r---~~~v~aI~~la~~~~------------~~~~~~v~~Ll~ll~~--~~~~ 405 (591)
T 2vgl_B 350 NIAQVLAELKEYATE-------VDVDFV---RKAVRAIGRCAIKVE------------QSAERCVSTLLDLIQT--KVNY 405 (591)
T ss_dssp THHHHHHHHHHHTTS-------SCHHHH---HHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHT--CCHH
T ss_pred hHHHHHHHHHHHHhc-------CCHHHH---HHHHHHHHHHHHhCh------------hHHHHHHHHHHHHHcc--cchH
Confidence 12233333333211 111111 134566777775542 3345666777776652 3455
Q ss_pred HhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhH-HHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCC
Q 001968 708 LRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE-MAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPR 786 (989)
Q Consensus 708 i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~-~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~ 786 (989)
++..+...++.+++.........++.+++. +.....+. ....+|+ +.+|+....+ -. .++...+.-+..
T Consensus 406 v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~-l~~~~~~~~~~~~~wi----lGey~~~~~~-~~----~~l~~l~~~~~~ 475 (591)
T 2vgl_B 406 VVQEAIVVIRDIFRKYPNKYESIIATLCEN-LDSLDEPDARAAMIWI----VGEYAERIDN-AD----ELLESFLEGFHD 475 (591)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCTTHHHHHHT-TTTCCSHHHHHHHHHH----HHTTCTTCTT-HH----HHHHHHSTTCSS
T ss_pred HHHHHHHHHHHHHHHCcchHHHHHHHHHHH-HHhccCHHHHHHHHHH----HHcccccccC-HH----HHHHHHHHhhcc
Confidence 666666677777766544323334444442 22222222 2333444 4456654321 11 222222222211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhh-cCCCChhhhhHHHHHHHH
Q 001968 787 DAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTS-CNHKDYLVRKACVQIFIR 864 (989)
Q Consensus 787 ~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~-~~~~~~~~~k~a~~~l~~ 864 (989)
+.++++......+..+..+.+.. ....+..++..+ .++.+++++.-|..++.-
T Consensus 476 ---------------~~~~vr~~~l~a~~Kl~~~~p~~----------~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 476 ---------------ESTQVQLTLLTAIVKLFLKKPSE----------TQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHTTCCST----------THHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred ---------------CCHHHHHHHHHHHHHHHhcCchH----------HHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 34678888888887777665321 112333333333 256788998888876643
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.19 E-value=0.013 Score=68.11 Aligned_cols=343 Identities=12% Similarity=0.103 Sum_probs=173.7
Q ss_pred CChhHHHHHHHHHHHhcccCchh---hhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchH--
Q 001968 454 RNVEEVEAALTLLYALGESMSEE---AMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIP-- 528 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~---~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~-- 528 (989)
.++.....|+..+..+...-... .+. ....++.++..|-. ..++.++...+.+++.++..-..+...+-
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~-~~g~v~~Lv~lL~~-----~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 159 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVQFLTR-----EDFPQLQFEAAWALTNIASGTSENTKVVIDH 159 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHH-HTTCHHHHHHHHTC-----TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHH-HCCCHHHHHHHhCC-----CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 46777777777777665443211 111 23567777775531 12256643333357666653111111110
Q ss_pred HHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHh---hhcchh--hHHHHHHHhHhhhhccccCCcccccCCCCcchhHH
Q 001968 529 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL---KAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSHI 603 (989)
Q Consensus 529 ~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~---~~~l~p--~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 603 (989)
.+++.|+. .+.++++.|+..|+.+|.++|.+. +..+.. .++.++. ++.... +..-+...
T Consensus 160 g~i~~L~~--lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~----lL~~~~----------~~~v~~~a 223 (528)
T 4b8j_A 160 GAVPIFVK--LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA----QLNEHT----------KLSMLRNA 223 (528)
T ss_dssp THHHHHHH--HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHH----TCCTTC----------CHHHHHHH
T ss_pred CcHHHHHH--HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHH----HHhcCC----------CHHHHHHH
Confidence 23444444 555578899999999999999653 333322 3444433 331110 01234556
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCc
Q 001968 604 FEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPA 683 (989)
Q Consensus 604 ~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~ 683 (989)
..+++.+....+ .........++.+++ .++.. . +... ....+.+++.++.+-.. .
T Consensus 224 ~~~L~~L~~~~~---~~~~~~~~~~l~~L~----~lL~~-----~--~~~v---~~~a~~aL~~l~~~~~~--------~ 278 (528)
T 4b8j_A 224 TWTLSNFCRGKP---QPSFEQTRPALPALA----RLIHS-----N--DEEV---LTDACWALSYLSDGTND--------K 278 (528)
T ss_dssp HHHHHHHHCSSS---CCCHHHHTTHHHHHH----HHTTC-----C--CHHH---HHHHHHHHHHHTSSCHH--------H
T ss_pred HHHHHHHHcCCC---CCcHHHHHHHHHHHH----HHHCC-----C--CHHH---HHHHHHHHHHHHcCCHH--------H
Confidence 667777766532 223333333333333 33321 1 1122 12445667777643211 1
Q ss_pred hHHHHH-HHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhccc---c--cCchHHHHHHHHccCChhHHHHHHHHHHHH
Q 001968 684 IGLMFK-QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS---V--FPYLPKALEQLLAESEPKEMAGFLVLLNQL 757 (989)
Q Consensus 684 ~~~~~~-~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~---~--~p~l~~l~~~ll~~~~~~~~~~~L~l~~~l 757 (989)
...+.. .+++.+..++. ..+..++..++.++..++...... + ...+|.++..+-...+..-.....++++.+
T Consensus 279 ~~~~~~~g~v~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 279 IQAVIEAGVCPRLVELLL--HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHc--CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 111111 35566666665 345788999999999887532211 1 233565655443332433335566777777
Q ss_pred HHHhhhhhHHHHH-HhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChH
Q 001968 758 ICKFNTLVHDILD-EVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLD 836 (989)
Q Consensus 758 i~~~~~~~~~~l~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~ 836 (989)
+..-.......+. .+++.+ ..++.. ..+++++.....+..+..+.-+.....-...+.+.
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L----~~lL~~---------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~ 417 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPL----VNLLQT---------------AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIK 417 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHH----HHHHHH---------------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHCCCHHHH----HHHHhc---------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 6521111222221 233333 334432 23678888888888887763111110000122444
Q ss_pred HHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHh
Q 001968 837 PIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 869 (989)
Q Consensus 837 ~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~ 869 (989)
.++..+ ..+++.+...|+.++..++...
T Consensus 418 ~L~~lL-----~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 418 PLCDLL-----ICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHGG-----GCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCCCHHHHHHHHHHHHHHHHHH
Confidence 444433 6689999999999999998754
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.16 E-value=0.083 Score=61.04 Aligned_cols=308 Identities=11% Similarity=0.110 Sum_probs=150.2
Q ss_pred cCCHHHHHHHHHHhhccccc---cccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhh
Q 001968 205 SSDFEVCTGVLDCMRRYISW---IDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ 281 (989)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~w---i~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~ 281 (989)
+.+++....++.++...++- -++..+.+...++.+.++|.. .+++.++..|+.+|..+.+.. +..+..++..=.
T Consensus 87 s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~--~~~~~~vv~~Ga 163 (529)
T 3tpo_A 87 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGT--SEQTKAVVDGGA 163 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCC
Confidence 55777777777777766542 344566778899999999863 356889999999999998642 221112222111
Q ss_pred hhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccch-hcHHHHHHH
Q 001968 282 ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTT-FSIVQFLSG 360 (989)
Q Consensus 282 l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~ 360 (989)
++.++. +....+.+..+..+..+..+... +++.+... .-...++.++.++..++.+.. ..+......
T Consensus 164 ip~Lv~-LL~s~~~~v~e~A~~aL~nLa~~---------~~~~r~~i--~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 164 IPAFIS-LLASPHAHISEQAVWALGNIAGA---------GSAFRDLV--IKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHH-HTTCSCHHHHHHHHHHHHHHHTT---------CHHHHHHH--HHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHhcc---------CHHHHHHH--HHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 333333 33445666655544433222210 01111000 011345666666665543321 112222222
Q ss_pred HHHHh-ccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Q 001968 361 YVATM-KSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVF 439 (989)
Q Consensus 361 ~l~~~-~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~ 439 (989)
.+..+ +...+... ......++..+.+.+..++ + +.+.+....+.+++.-..+....+
T Consensus 232 ~L~nl~~~~~~~~~--~~~~~~~lp~L~~LL~~~~--------------~------~v~~~a~~aL~~l~~~~~~~~~~v 289 (529)
T 3tpo_A 232 TLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHND--------------P------EVLADSCWAISYLTDGPNERIEMV 289 (529)
T ss_dssp HHHHHHCCCTTCCC--HHHHHHHHHHHHHHTTSSC--------------H------HHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHhcccchhh--HHHHhhHHHHHHHHhcCCc--------------H------HHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222 22222111 1223445555555433211 1 123333444444443222211111
Q ss_pred ----HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhh-hcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHH
Q 001968 440 ----IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM-RTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVT 514 (989)
Q Consensus 440 ----i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~-~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg 514 (989)
+.+.|...+.+ .++.-.+.++.+++.++.+-+.... --....++.++..+ ..+++.++...+.+++
T Consensus 290 ~~~g~i~~Lv~lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 290 VKKGVVPQLVKLLGA---TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATWTMS 360 (529)
T ss_dssp HTTTCHHHHHHHHTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHHHHH
T ss_pred HhccchHHHHHHhcC---CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHHHHH
Confidence 12233333433 6778888888888887755432210 00123455555532 2355556322222566
Q ss_pred hhHhhhhh------ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh
Q 001968 515 RYMKFIQE------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA 564 (989)
Q Consensus 515 ~y~~~l~~------~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~ 564 (989)
..+..-.. ....++.++..+ .+++..++..|++++.+++..+..
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL------~~~~~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVL------SKADFKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHH------HSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHh------cCCCHHHHHHHHHHHHHHHcCCCH
Confidence 65543211 233455555543 346778999999999999986543
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.15 E-value=0.03 Score=64.84 Aligned_cols=303 Identities=14% Similarity=0.115 Sum_probs=153.4
Q ss_pred cCCHHHHHHHHHHhhcccccc---ccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhh
Q 001968 205 SSDFEVCTGVLDCMRRYISWI---DINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ 281 (989)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~wi---~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~ 281 (989)
+.++++...++.++...++.- +...+.....++.+..++.. ..++.++..|+.+|..+.... +..+-.++..=.
T Consensus 98 s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~-~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~g~ 174 (530)
T 1wa5_B 98 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE-NQPEMLQLEAAWALTNIASGT--SAQTKVVVDADA 174 (530)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHCCC
Confidence 457888888999988876642 12334556789999888863 126899999999999987632 111111221101
Q ss_pred hhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHH
Q 001968 282 ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGY 361 (989)
Q Consensus 282 l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 361 (989)
++.++..+ .+.+.+..+..+..+..+... .+..+.. -.-...++.++.++.+++.+ +.......
T Consensus 175 i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~---------~~~~~~~--~~~~~~l~~L~~ll~~~~~~----v~~~a~~~ 238 (530)
T 1wa5_B 175 VPLFIQLL-YTGSVEVKEQAIWALGNVAGD---------STDYRDY--VLQCNAMEPILGLFNSNKPS----LIRTATWT 238 (530)
T ss_dssp HHHHHHHH-HHCCHHHHHHHHHHHHHHHTT---------CHHHHHH--HHHTTCHHHHHHGGGSCCHH----HHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhCC---------CccchHH--HHHcCcHHHHHHHhccCCHH----HHHHHHHH
Confidence 22222222 234556655555443333311 0000000 01124566777777653322 22222222
Q ss_pred HHHh-ccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Q 001968 362 VATM-KSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFI 440 (989)
Q Consensus 362 l~~~-~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i 440 (989)
+..+ ....+... ......++..++..+..+ + .+.|.....++.+++.-.++....++
T Consensus 239 L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~~~--------------d------~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 239 LSNLCRGKKPQPD--WSVVSQALPTLAKLIYSM--------------D------TETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp HHHHHCCSSSCCC--HHHHGGGHHHHHHHTTCC--------------C------HHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHhCCCCCCCc--HHHHHhHHHHHHHHHcCC--------------C------HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 2222 22111111 112233344444433210 1 13455666667666654443222222
Q ss_pred ----HHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhh-cccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 001968 441 ----RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTR 515 (989)
Q Consensus 441 ----~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~-~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~ 515 (989)
.+.+...+. ..+|.-++.++.+++.++.+.+..... -....++.++..+ .++++.++...+.+++.
T Consensus 297 ~~~~v~~Lv~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 297 DVRIPKRLVELLS---HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL------SSPKENIKKEACWTISN 367 (530)
T ss_dssp HTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHC---CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH------cCCCHHHHHHHHHHHHH
Confidence 233444443 367999999998888887654321100 0123455555432 23456663222235776
Q ss_pred hHhh----hhh--ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh
Q 001968 516 YMKF----IQE--HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 563 (989)
Q Consensus 516 y~~~----l~~--~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~ 563 (989)
.+.. ... ....++.++..+- ++++.++..|+.+|.+++....
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLE------VAEYKTKKEACWAISNASSGGL 415 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHh------cCCHHHHHHHHHHHHHHHhcCC
Confidence 6542 211 2345666666443 3567999999999999998754
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.11 E-value=0.028 Score=65.06 Aligned_cols=302 Identities=11% Similarity=0.078 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHhhccccccc---cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhh
Q 001968 205 SSDFEVCTGVLDCMRRYISWID---INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ 281 (989)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~wi~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~ 281 (989)
+.++++...++.++...++--+ ...+.....++.+.+++.. .+++.++..|+.+|..+.... +..+..++..=.
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~g~ 161 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-EDFPQLQFEAAWALTNIASGT--SENTKVVIDHGA 161 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCC--HHHHHHHHhCCc
Confidence 4578888888888887765432 3344556889999999863 223899999999999998632 222222222111
Q ss_pred hhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhh-cCcccchhcHHHHHHH
Q 001968 282 ISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQ-NCEVDTTFSIVQFLSG 360 (989)
Q Consensus 282 l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~ 360 (989)
++.++..+ .+.+.+..+..+..+..+... .+..+.. -.-...++.++.++. +++. .+......
T Consensus 162 i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~---------~~~~~~~--i~~~g~l~~Ll~lL~~~~~~----~v~~~a~~ 225 (528)
T 4b8j_A 162 VPIFVKLL-GSSSDDVREQAVWALGNVAGD---------SPKCRDL--VLANGALLPLLAQLNEHTKL----SMLRNATW 225 (528)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHHT---------CHHHHHH--HHHTTCHHHHHHTCCTTCCH----HHHHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhCC---------ChhhHHH--HHHCCcHHHHHHHHhcCCCH----HHHHHHHH
Confidence 23333322 334566655555443333211 0000000 001134566666663 3222 22222222
Q ss_pred HHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHH-
Q 001968 361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVF- 439 (989)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~- 439 (989)
.+..+-...+... ......++..++..+.-+ + .+.|......+.+++.-.+.....+
T Consensus 226 ~L~~L~~~~~~~~--~~~~~~~l~~L~~lL~~~--------------~------~~v~~~a~~aL~~l~~~~~~~~~~~~ 283 (528)
T 4b8j_A 226 TLSNFCRGKPQPS--FEQTRPALPALARLIHSN--------------D------EEVLTDACWALSYLSDGTNDKIQAVI 283 (528)
T ss_dssp HHHHHHCSSSCCC--HHHHTTHHHHHHHHTTCC--------------C------HHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHcCCCCCc--HHHHHHHHHHHHHHHCCC--------------C------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3333221111110 122344444544433211 1 1234555555555554333222111
Q ss_pred ---HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhh-hhcccccHHHHHHHHHhCCCCCCC-CchHHHHHHHHHH
Q 001968 440 ---IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHS-NRLVALVYLETVT 514 (989)
Q Consensus 440 ---i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~-~~~~~~~l~~ll~~ll~~~~~~~~-~~~v~~~~~~~lg 514 (989)
+.+.+...+.+ .++...+.++.+++.++.+.+... .--....++.++..+- ++ ++.++...+.+++
T Consensus 284 ~~g~v~~Lv~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 284 EAGVCPRLVELLLH---PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT------QNLKKSIKKEACWTIS 354 (528)
T ss_dssp HTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH------SCCCHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHcC---CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc------CCCcHHHHHHHHHHHH
Confidence 12334444433 568888999988888887554321 0002345666666544 23 5556322222566
Q ss_pred hhHhh----hh--hccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHh
Q 001968 515 RYMKF----IQ--EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (989)
Q Consensus 515 ~y~~~----l~--~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~ 562 (989)
..+.. .. .....++.++..+-+ +++.++..|+.+|.+++...
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQT------AEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhc------CCHHHHHHHHHHHHHHHcCC
Confidence 66532 11 123556666665543 46789999999999999874
No 40
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.05 E-value=0.087 Score=60.91 Aligned_cols=301 Identities=11% Similarity=0.063 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHhhccccccc--cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhh
Q 001968 207 DFEVCTGVLDCMRRYISWID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISR 284 (989)
Q Consensus 207 ~~~l~~~~L~~l~~~i~wi~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~ 284 (989)
++.+...++.++......-+ ...+.....++.+..++.. +++.++..|+.+|..+.... +..+-.++..=.++.
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~ 219 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEP 219 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCC--ccchHHHHHcCcHHH
Confidence 78888888888887765321 1223446788999898875 58999999999999998632 222212222101233
Q ss_pred hhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHH
Q 001968 285 VFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVAT 364 (989)
Q Consensus 285 ~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 364 (989)
++..+. +.+.+.....+..+..+. ..-. ..... ......+|.+..++.+++... ..-....+..
T Consensus 220 L~~ll~-~~~~~v~~~a~~~L~~L~----~~~~--~~~~~-----~~~~~~l~~L~~lL~~~d~~v----~~~a~~~L~~ 283 (530)
T 1wa5_B 220 ILGLFN-SNKPSLIRTATWTLSNLC----RGKK--PQPDW-----SVVSQALPTLAKLIYSMDTET----LVDACWAISY 283 (530)
T ss_dssp HHHGGG-SCCHHHHHHHHHHHHHHH----CCSS--SCCCH-----HHHGGGHHHHHHHTTCCCHHH----HHHHHHHHHH
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHHh----CCCC--CCCcH-----HHHHhHHHHHHHHHcCCCHHH----HHHHHHHHHH
Confidence 333222 245555555444332222 1000 00000 133467777888877654222 2112222222
Q ss_pred hccCCCChHHHhHhHH-HHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHH----
Q 001968 365 MKSLSPLKEEQRLHAG-QILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVF---- 439 (989)
Q Consensus 365 ~~~~~~~~~~~~~~~~-~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~---- 439 (989)
+-...+ .....++. .++..++..+..+ + ...|.....++.+++.-.+.....+
T Consensus 284 L~~~~~--~~~~~~~~~~~v~~Lv~lL~~~--------------~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 341 (530)
T 1wa5_B 284 LSDGPQ--EAIQAVIDVRIPKRLVELLSHE--------------S------TLVQTPALRAVGNIVTGNDLQTQVVINAG 341 (530)
T ss_dssp HHSSCH--HHHHHHHHTTCHHHHHHGGGCS--------------C------HHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HhCCCH--HHHHHHHhcCcHHHHHHHHCCC--------------C------hhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 221110 11111111 2333344433211 0 1344555556666554333322211
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhh-cccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHh
Q 001968 440 IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMK 518 (989)
Q Consensus 440 i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~-~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~ 518 (989)
+.+.+...+.+ .+|..++.++.+++.++.+.+..... -....++.++..+- .+++.++...+.+++.++.
T Consensus 342 ~l~~L~~lL~~---~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 342 VLPALRLLLSS---PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE------VAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH------HSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh------cCCHHHHHHHHHHHHHHHh
Confidence 22333444433 57999999999999998765432100 01346777777554 2445553333335666654
Q ss_pred hhhh---------ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh
Q 001968 519 FIQE---------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA 564 (989)
Q Consensus 519 ~l~~---------~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~ 564 (989)
.... +...++.++. .+.++++.++..|+.+|.++++.+..
T Consensus 413 ~~~~~~~~~~~l~~~~~l~~L~~------ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQGCIKPLCD------LLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHH------HTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHCCCHHHHHH------HHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4221 1233444444 44456789999999999999988764
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.99 E-value=0.17 Score=59.50 Aligned_cols=249 Identities=13% Similarity=0.118 Sum_probs=126.5
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhh
Q 001968 440 IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKF 519 (989)
Q Consensus 440 i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~ 519 (989)
+.+.+..-+.+ .+...+-.|+.+++.++ ..+ +. ...++.+...+ .+++|.|+-....++++..+
T Consensus 108 ~in~l~kDL~~---~n~~vr~lAL~~L~~i~---~~~-~~--~~l~~~l~~~L------~~~~~~VRk~A~~al~~l~~- 171 (618)
T 1w63_A 108 MTNCIKNDLNH---STQFVQGLALCTLGCMG---SSE-MC--RDLAGEVEKLL------KTSNSYLRKKAALCAVHVIR- 171 (618)
T ss_dssp HHHHHHHHHSC---SSSHHHHHHHHHHHHHC---CHH-HH--HHHHHHHHHHH------HSCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCC---CCHhHHHHHHHHHHhcC---CHH-HH--HHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHH-
Confidence 34445544443 55566666776666665 221 10 11233333322 25788984333224655544
Q ss_pred hhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh---cchhhHHHHHHHhHhhhhccccCCcccccCCC
Q 001968 520 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA---KLVPFIENILQSLQDTIARFTSMNYASKELSG 596 (989)
Q Consensus 520 l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~ 596 (989)
.+|+.++..++.+.+ .+.++++.|+..|+.+|..+++..+. .+.+.++.++..+.++.......+.......+
T Consensus 172 --~~p~~v~~~~~~l~~--lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~ 247 (618)
T 1w63_A 172 --KVPELMEMFLPATKN--LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISD 247 (618)
T ss_dssp --HCGGGGGGGGGGTTT--STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred --HChHHHHHHHHHHHH--HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence 467777777777776 78888999999999999999865432 33445566666555544321110000000001
Q ss_pred CcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCC
Q 001968 597 SEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERL 676 (989)
Q Consensus 597 ~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~ 676 (989)
+--+..+.+.++.+... +++... .++ +++. +++...... ...+. .-+...+.++..+. ..
T Consensus 248 ~~~q~~il~~L~~l~~~---~~~~~~----~~~-~~L~---~l~~~~~~~-~~~~~---aV~~ea~~~i~~l~----~~- 307 (618)
T 1w63_A 248 PFLQVRILRLLRILGRN---DDDSSE----AMN-DILA---QVATNTETS-KNVGN---AILYETVLTIMDIK----SE- 307 (618)
T ss_dssp HHHHHHHHHHHHHHTTT---CHHHHH----TTH-HHHH---HHHHTSCCS-STHHH---HHHHHHHHHHHHSC----CC-
T ss_pred ChHHHHHHHHHHHhCCC---CHHHHH----HHH-HHHH---HHHhccccc-cchHH---HHHHHHHHHHHhcC----CC-
Confidence 23467778888876543 222211 111 1122 222111000 00011 11223334444432 10
Q ss_pred cCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHH
Q 001968 677 VTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQL 738 (989)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l 738 (989)
+ .....+.+.+..++. ..+..+|..+...+..+...-+..+.++.+.++..+
T Consensus 308 -----~---~l~~~a~~~L~~~L~--~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l 359 (618)
T 1w63_A 308 -----S---GLRVLAINILGRFLL--NNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL 359 (618)
T ss_dssp -----H---HHHHHHHHHHHHHHT--CSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG
T ss_pred -----H---HHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc
Confidence 1 122345555555554 356688888888888887766555677777776644
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.90 E-value=0.073 Score=62.59 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=126.3
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhh
Q 001968 441 RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI 520 (989)
Q Consensus 441 ~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l 520 (989)
.+.+..-+++ .+...+-.||.+++.++. ++ +. ...++.+...+. ..+++|+|+-..+-++.+..+
T Consensus 113 iN~l~kDl~~---~n~~ir~lALr~L~~i~~---~e-~~--~~l~~~v~~~l~----~~d~~~~VRK~A~~al~kl~~-- 177 (621)
T 2vgl_A 113 NNAIKNDLAS---RNPTFMGLALHCIANVGS---RE-MA--EAFAGEIPKILV----AGDTMDSVKQSAALCLLRLYR-- 177 (621)
T ss_dssp HHHHHHHHHS---CCHHHHHHHHHHHHHHCC---HH-HH--HHHTTHHHHHHH----CSSSCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhcCC---CCHHHHHHHHHHhhccCC---HH-HH--HHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHH--
Confidence 3444444443 455666677766666643 21 10 112233333222 146889994222113444443
Q ss_pred hhccCchH--HHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccC-Cc-ccccCCC
Q 001968 521 QEHTQYIP--VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSM-NY-ASKELSG 596 (989)
Q Consensus 521 ~~~~~~L~--~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~-~~-~~~~~~~ 596 (989)
.+|+.++ ..++.+.. .+.++++.|+..|..++..+|++-+..+.++++.++..+..++....-. +. ......+
T Consensus 178 -~~p~~~~~~~~~~~l~~--lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 178 -TSPDLVPMGDWTSRVVH--LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp -HCGGGCCCCSCHHHHHH--HTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred -hChhhcCchhHHHHHHH--HhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 3444444 44444444 5567889999999999999999877777788888887777766432100 00 0000001
Q ss_pred CcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHH-----HHHhhhhcCCchhhhHHHHHHHHHHHHhhhccC
Q 001968 597 SEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQT-----MLLDAKMLNPEESTAKFANIQQIIMAINALSKG 671 (989)
Q Consensus 597 ~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~-----~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~ 671 (989)
+--+..+.+.++.+... +..+..+.+..++..+++.... .++.. +. ...-+...+.++-.+.
T Consensus 255 ~w~qi~il~ll~~~~~~---~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~-------n~-~~aVl~ea~~~i~~l~-- 321 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPP---EDPAVRGRLTECLETILNKAQEPPKSKKVQHS-------NA-KNAVLFEAISLIIHHD-- 321 (621)
T ss_dssp HHHHHHHHHHGGGSSSC---SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHH-------HH-HHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHhhccCccccccccc-------ch-HHHHHHHHHHHHHhcC--
Confidence 12466777777654322 1122223333333333322110 00000 00 0011122233333332
Q ss_pred CCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhc--ccccCchHHHHHHH
Q 001968 672 FNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG--ASVFPYLPKALEQL 738 (989)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~--~~~~p~l~~l~~~l 738 (989)
+ ..+....+.+.+..++. ..+..+|-.+...+.+++..-+ ..+.++.+.++..+
T Consensus 322 --~---------~~~~~~~~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 322 --S---------EPNLLVRACNQLGQFLQ--HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp --C---------CHHHHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred --C---------cHHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Confidence 1 12345566666666654 4567888888888888876543 23456666666644
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.80 E-value=0.083 Score=60.71 Aligned_cols=309 Identities=11% Similarity=0.116 Sum_probs=148.8
Q ss_pred ccCCHHHHHHHHHHhhccccc---cccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhh
Q 001968 204 RSSDFEVCTGVLDCMRRYISW---IDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTL 280 (989)
Q Consensus 204 ~~~~~~l~~~~L~~l~~~i~w---i~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l 280 (989)
.+.+++....+...++..++- -|+..+.+...++.+.++|.. .+++.++..|+.+|..|++. .++.+..++..=
T Consensus 67 ~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~--~~e~~~~vv~~G 143 (510)
T 3ul1_B 67 NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASG--TSEQTKAVVDGG 143 (510)
T ss_dssp TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCC
Confidence 356777777777777776652 245566777899999998863 34688999999999999863 222222233221
Q ss_pred hhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcCcccch-hcHHHHHH
Q 001968 281 QISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTT-FSIVQFLS 359 (989)
Q Consensus 281 ~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~ 359 (989)
.++.++..+ .+.+.+..+..+..+..+... .+..+.. -.-...++.++.++..++.+.. ..+.....
T Consensus 144 aIp~Lv~lL-~s~~~~v~e~A~~aL~nLa~d---------~~~~r~~--v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 144 AIPAFISLL-ASPHAHISEQAVWALGNIAGD---------GSAFRDL--VIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHHTT---------CHHHHHH--HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHHhC---------CHHHHHH--HHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 133333333 345666665554433333211 0000100 0111345566666665543321 11222222
Q ss_pred HHHHHh-ccCCCChHHHhHhHHHHHHHHHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Q 001968 360 GYVATM-KSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQV 438 (989)
Q Consensus 360 ~~l~~~-~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~ 438 (989)
..+..+ +...+... ......++..+.+.+..+ ++ +.|......+.+++.-..+....
T Consensus 212 ~~L~nl~~~~~~~~~--~~~~~~~lp~L~~LL~~~--------------~~------~v~~~A~~aL~~L~~~~~~~~~~ 269 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHN--------------DP------EVLADSCWAISYLTDGPNERIEM 269 (510)
T ss_dssp HHHHHHHCCCSSCCC--HHHHHHHHHHHHHHTTCS--------------CH------HHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHhhcccchhH--HHHHHhHHHHHHHHHhcC--------------CH------HHHHHHHHHHHHHhhchhhhHHH
Confidence 222222 22221111 122344555555433321 11 12334444444444322222111
Q ss_pred H----HHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhh-cccccHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Q 001968 439 F----IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETV 513 (989)
Q Consensus 439 ~----i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~-~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~l 513 (989)
+ +.+.+...+.+ .++.-.+.++.+++.++.+-+..... -....++.++. +...+++.++...+.++
T Consensus 270 i~~~g~i~~Lv~lL~~---~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~------LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 270 VVKKGVVPQLVKLLGA---TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS------LLTNPKTNIQKEATWTM 340 (510)
T ss_dssp HHTTTCHHHHHHHHTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-------CTTCSSHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhcC---CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHH------HhcCCCHHHHHHHHHHH
Confidence 1 12233334433 66777888888887776543321000 01122332222 22345555532222256
Q ss_pred HhhHhhhhh------ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhh
Q 001968 514 TRYMKFIQE------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA 564 (989)
Q Consensus 514 g~y~~~l~~------~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~ 564 (989)
+..+..-.. ....++.++..+ .+++..++..|++++.+++..+..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL------~~~~~~v~~~Aa~aL~Nl~~~~~~ 391 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVL------SKADFKTQKEAAWAITNYTSGGTV 391 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHH------HSSCHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHH------cCCCHHHHHHHHHHHHHHHccCCH
Confidence 655432111 223445554433 346789999999999999987643
No 44
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.58 E-value=2.5 Score=52.43 Aligned_cols=315 Identities=8% Similarity=0.104 Sum_probs=165.3
Q ss_pred CchHHHHHHhhcccCCC--CCCchhhhhHHHHHHHHHHHhhhc-chhhHHHHHHHhHhhhhccccCCcccccCCCCcchh
Q 001968 525 QYIPVVLAAFLDERGIH--HPNVHVSRRASYLFMRVVKLLKAK-LVPFIENILQSLQDTIARFTSMNYASKELSGSEDGS 601 (989)
Q Consensus 525 ~~L~~vl~~l~~~~~l~--~~~~~v~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~ 601 (989)
+.++.+++.+-. .+. +.+-+.+.+|+++|..+++.+.+. ..|++++++..+..+..... +.+.+.
T Consensus 447 ~~~~~~~~~l~~--~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~----------~~d~k~ 514 (1023)
T 4hat_C 447 DTEEIMISKLAR--QIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR----------GKDNKA 514 (1023)
T ss_dssp HHHHHHHHHHHH--HHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC----------SHHHHH
T ss_pred HHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc----------cCcchH
Confidence 556666666543 222 245678999999999999887654 67899999888777664321 123455
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCc
Q 001968 602 HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSR 681 (989)
Q Consensus 602 ~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~ 681 (989)
.+-.++..+++. ++.-- ..=...+.|+++.+-+.+... .++ +.. ....++.+++...+...+....
T Consensus 515 ~v~~t~~~~lGr--y~~wl--~~~~~~L~~vl~~L~~~l~~~-------~~~-v~~--~A~~al~~l~~~c~~~l~~~~~ 580 (1023)
T 4hat_C 515 VVASDIMYVVGQ--YPRFL--KAHWNFLRTVILKLFEFMHET-------HEG-VQD--MACDTFIKIVQKCKYHFVIQQP 580 (1023)
T ss_dssp HHHHHHHHHHHT--CHHHH--HHCHHHHHHHHHHHHHHTTCS-------CHH-HHH--HHHHHHHHHHHHHTHHHHSCCT
T ss_pred HHHHHHHHHHHH--HHHHH--hccHHHHHHHHHHHHHHhhcC-------CHH-HHH--HHHHHHHHHHHHHHHHhhccCC
Confidence 666677788877 32211 111223555555544433210 111 111 1223333333333211100001
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccc--cCchHHHHH-------HHHc----cCC-----
Q 001968 682 PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV--FPYLPKALE-------QLLA----ESE----- 743 (989)
Q Consensus 682 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~--~p~l~~l~~-------~ll~----~~~----- 743 (989)
.+..+++.++++.+..+...+ ...-+..+..++..++...+..- ..++..+++ .+.. +.+
T Consensus 581 ~e~~p~~~~il~~l~~~~~~l--~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~ 658 (1023)
T 4hat_C 581 RESEPFIQTIIRDIQKTTADL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDS 658 (1023)
T ss_dssp TCSSCHHHHHHHTHHHHHTTS--CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCH
T ss_pred CCCchhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCH
Confidence 112346677777777776644 33445678889999998887432 223333332 2221 111
Q ss_pred --hhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH---HHhhcCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 001968 744 --PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGR---IFNIIPRDAFPSGP-GTNTEEIREVQELQRTLYTFLHVI 817 (989)
Q Consensus 744 --~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~---~~~~l~~~~~~~~~-~~~~~~~~~~pd~~~~~~~ll~~~ 817 (989)
.+++...+.+.+.++...|..+.+++..+++.+++- ....+.+.-..+|+ ...+...+.---++++..+++.++
T Consensus 659 ~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~ 738 (1023)
T 4hat_C 659 ETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETY 738 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHH
Confidence 134556677778888889998888888877766532 11222100000010 111223455556778889999999
Q ss_pred HhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhh-HHHHHHHHHHHHhhC
Q 001968 818 ATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRK-ACVQIFIRLIKDWCA 871 (989)
Q Consensus 818 ~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k-~a~~~l~~~i~~~~~ 871 (989)
+.++...=.+. ..+++.++..++.-...+ .+..+. ..+..++.+++..+.
T Consensus 739 i~~~~~~~~~~---~~~~~~l~~~vl~dY~~~-~~~~r~~~vL~l~s~iv~~~~~ 789 (1023)
T 4hat_C 739 ISKARNLDDVV---KVLVEPLLNAVLEDYMNN-VPDARDAEVLNCMTTVVEKVGH 789 (1023)
T ss_dssp HHHCSCHHHHH---HHTHHHHHHHHHHHHHHS-CGGGCCHHHHHHHHHHHHHHGG
T ss_pred HhcCCCHHHHH---HHhHHHHHHHHHHHHHhC-ChhhccHHHHHHHHHHHHHHHH
Confidence 88763211111 113444555444322222 122211 256788888888864
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.37 E-value=2.3 Score=49.72 Aligned_cols=124 Identities=12% Similarity=0.079 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHHhcC-CchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 001968 18 IDSMLKSQAVNFCQQIKET-PSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCE 93 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~-~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~ 93 (989)
+|...|+-+--++..+-+. ++---.+...+.+ ++++.+|-.|+.+|-+.. +++-.+.+-..+...+.+
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~~v~~~l~~- 157 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAGEIPKILVA- 157 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTTHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHHHHHHHHhC-
Confidence 3677777777777766543 4433333333332 456778888888877652 233333333333333321
Q ss_pred hhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCCh--hhHHHHHHhhcC-CchhHHHHHHHHHHHHH
Q 001968 94 LVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWS--SVFVDFLPQLNK-GSMVIDMFCRVLNSLDD 160 (989)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp--~~~~~l~~~~~~-~~~~~~~~L~iL~~l~E 160 (989)
....++||++.+.++..++. ..|+.=+ ++++.+...+.. ++.+....+..|..+.+
T Consensus 158 ----------~d~~~~VRK~A~~al~kl~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 158 ----------GDTMDSVKQSAALCLLRLYR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp ----------SSSCHHHHHHHHHHHHHHHH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 13578999999999999976 5565333 455555555554 33444455555555443
No 46
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.09 E-value=3.8 Score=49.45 Aligned_cols=212 Identities=10% Similarity=0.031 Sum_probs=120.8
Q ss_pred CCHHHHHHHHHHHHHHhc----------CCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 001968 18 IDSMLKSQAVNFCQQIKE----------TPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVF 87 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~----------~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll 87 (989)
.++..|..|-..|..+-. .+++......+|.++.++++|..|+..|.+ +... +.......+...+
T Consensus 162 ~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~----~~~~~~i~~~g~I 236 (780)
T 2z6g_A 162 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHH----REGLLAIFKSGGI 236 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTS----HHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCC----chhHHHHHHcCCH
Confidence 388999999999888765 345666667777766678999999999998 4432 1222223333456
Q ss_pred HHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHH
Q 001968 88 SMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIW-----SSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDE 161 (989)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~W-----p~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee 161 (989)
..+.... ......++...+.+|..|... .+... ...++.++..+..+. ......+..|..++..
T Consensus 237 ~~Lv~lL---------~~~~~~v~~~A~~aL~nLa~~-~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 237 PALVNML---------GSPVDSVLFHAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306 (780)
T ss_dssp HHHHHHT---------TCSCHHHHHHHHHHHHHHHHH-STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH---------cCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 6666542 123578999999999999653 32322 246777888887643 3344445555444310
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccc-cccccccccHHHH
Q 001968 162 LISLDYPRTADELTVAARIKDAMRQ-QCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID-INLIANDAFIPLL 239 (989)
Q Consensus 162 v~~~~~~~~~~~~~r~~~l~~~l~~-~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~-~~~~~~~~~l~~l 239 (989)
.. ..+..+.. ..++.++ .+|.. .........+..++......-. ...+.....++.+
T Consensus 307 --------~~-------e~~~~i~~~~~i~~Lv----~lL~~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L 365 (780)
T 2z6g_A 307 --------NQ-------ESKLIILASGGPQALV----NIMRT--YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 365 (780)
T ss_dssp --------CH-------HHHHHHHTTTHHHHHH----HHHTT--CCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHH
T ss_pred --------Ch-------HHHHHHHHcCCHHHHH----HHHhc--CCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHH
Confidence 00 01111111 1233333 44442 2233333344444433222111 1223344567777
Q ss_pred HHHHHhcCCChhHHhHHHHHHHHHHhcC
Q 001968 240 FELILADGLPEQFRGAAVGCVLAVVSKR 267 (989)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~l~~i~~~~ 267 (989)
..++.. .++.++..|+.+|..+....
T Consensus 366 l~lL~~--~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 366 GLHLTD--PSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp GGGTTC--SCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--CchHHHHHHHHHHHHHhccc
Confidence 777653 46788999999998887654
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.05 E-value=3.7 Score=49.60 Aligned_cols=219 Identities=12% Similarity=0.036 Sum_probs=116.1
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc---CCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 001968 5 EKAILFSFDESGAIDSMLKSQAVNFCQQIKE---TPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (989)
Q Consensus 5 ~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~---~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~ 81 (989)
...|..+.+| +...|..|-+.+....+ ...+|.....+|. +.++.+|--|+.+|.+..... +.+..
T Consensus 118 ~~lv~~L~~~----~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~------~~~~~ 186 (780)
T 2z6g_A 118 PTNVQRLAEP----SQMLKHAVVNLINYQDDAELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKE------ASRHA 186 (780)
T ss_dssp --------CC----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSH------HHHHH
T ss_pred HHHHHHhcCc----cHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCC------hhHHH
Confidence 3444445554 45566666666543221 1457888888887 456899999999998765431 22222
Q ss_pred HH--HHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC---CChhhHHHHHHhhcCCc-hhHHHHHHHH
Q 001968 82 IR--ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL---IWSSVFVDFLPQLNKGS-MVIDMFCRVL 155 (989)
Q Consensus 82 lr--~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~---~Wp~~~~~l~~~~~~~~-~~~~~~L~iL 155 (989)
+. ..++..+.+.... .....+|...+.+|..+....-+. .-...++-++..++++. ......+.+|
T Consensus 187 i~~~~~~i~~Lv~~L~~--------~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL 258 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQN--------TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258 (780)
T ss_dssp HTTCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 1233433332110 135678888888888875421100 00146777777776643 4555667777
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccc--cccccc
Q 001968 156 NSLDDELISLDYPRTADELTVAARIKDAMRQ-QCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID--INLIAN 232 (989)
Q Consensus 156 ~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~-~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~--~~~~~~ 232 (989)
..|+..-. ..+..+.+ ..++.++ .+|. ..+.++...++.++..|..--+ ...+..
T Consensus 259 ~nLa~~~~---------------~~~~~v~~~g~v~~Lv----~lL~---~~~~~v~~~a~~aL~~La~~~~e~~~~i~~ 316 (780)
T 2z6g_A 259 HNLLLHQE---------------GAKMAVRLAGGLQKMV----ALLN---KTNVKFLAITTDCLQILAYGNQESKLIILA 316 (780)
T ss_dssp HHHHHHST---------------THHHHHHHTTHHHHHH----HGGG---CCCHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHhCCCh---------------hhHHHHHHcCCHHHHH----HHHh---cCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 76665420 01112221 1233333 4443 4567777788888875542100 112234
Q ss_pred cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHh
Q 001968 233 DAFIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 233 ~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~ 265 (989)
...++.+..++.. .+....+..|+.+|..+..
T Consensus 317 ~~~i~~Lv~lL~~-~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 317 SGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp TTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhhc
Confidence 5667778887764 2345566677888777764
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.91 E-value=0.33 Score=49.32 Aligned_cols=224 Identities=16% Similarity=0.120 Sum_probs=141.9
Q ss_pred ChHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCC----------chHHHHHHHhccCCchHHHHHHHHHHHHHHhhh
Q 001968 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETP----------SICRICIEKLSLCNIVQVQFWCLQTLSEVVRVK 70 (989)
Q Consensus 1 m~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~----------~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~ 70 (989)
|+.+...+..+.++ +++.|.+|-..|..+-... .+......+|.+ .++.+|..|+..|.+....
T Consensus 1 ~~~i~~L~~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~- 74 (252)
T 4hxt_A 1 MNDVEKLVKLLTST----DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASG- 74 (252)
T ss_dssp CCHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-
T ss_pred CCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC-
Confidence 66777778777765 7889999999998886544 356666677765 4589999999999877442
Q ss_pred cCCCCHHHHHH-HHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHhhcCC
Q 001968 71 YTSMSSEERNL-IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIW-----SSVFVDFLPQLNKG 144 (989)
Q Consensus 71 w~~l~~~~~~~-lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~W-----p~~~~~l~~~~~~~ 144 (989)
+++.+.. ++...+..+.... ..+...++...+.++..+... .|+.. ...++.++..+..+
T Consensus 75 ----~~~~~~~~~~~~~i~~l~~ll---------~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~ 140 (252)
T 4hxt_A 75 ----PDEAIKAIVDAGGVEVLVKLL---------TSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTST 140 (252)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHT---------TCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred ----ChHHHHHHHHCCCHHHHHHHH---------cCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCC
Confidence 2343333 3334566666652 124678999999999998531 11111 24577777777654
Q ss_pred c-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhcccc
Q 001968 145 S-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYIS 223 (989)
Q Consensus 145 ~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~ 223 (989)
. ......+.+|..+...- . . +. +.+.+ ..++..+..++. +.++.+...++.++.+...
T Consensus 141 ~~~~~~~a~~~L~~l~~~~--------~-~--~~----~~~~~---~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 141 DSEVQKEAARALANIASGP--------D-E--AI----KAIVD---AGGVEVLVKLLT---STDSEVQKEAARALANIAS 199 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSC--------H-H--HH----HHHHH---TTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCC--------H-H--HH----HHHHH---CcCHHHHHHHHC---CCCHHHHHHHHHHHHHHHc
Confidence 3 45555666665543210 0 0 00 11111 122333334444 5678899999999988765
Q ss_pred ccc--cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC
Q 001968 224 WID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKR 267 (989)
Q Consensus 224 wi~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~ 267 (989)
.-+ ...+.+...++.+...+.. +++.++..|+.+|..+....
T Consensus 200 ~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 200 GPTSAIKAIVDAGGVEVLQKLLTS--TDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp SBHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHCC--CcHHHHHHHHHHHHHHHcCC
Confidence 322 1233456778888888763 57899999999999988754
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.39 E-value=4.3 Score=46.21 Aligned_cols=221 Identities=15% Similarity=0.138 Sum_probs=131.8
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc---CC--------chHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcC
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKE---TP--------SICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYT 72 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~---~~--------~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~ 72 (989)
+++.|..+++. |++.+.+|-+.+.++-. .| .+.+...++|..+.++.+++-|+..|.+.-.
T Consensus 59 i~~~v~~l~s~----d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias---- 130 (510)
T 3ul1_B 59 VEDIVKGINSN----NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS---- 130 (510)
T ss_dssp HHHHHHHHTSS----CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc----
Confidence 67777777764 88889888888877532 22 2456677888777778999999999988653
Q ss_pred CCCHHHHHHHH-HHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC-----CChhhHHHHHHhhcCCch
Q 001968 73 SMSSEERNLIR-ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL-----IWSSVFVDFLPQLNKGSM 146 (989)
Q Consensus 73 ~l~~~~~~~lr-~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~-----~Wp~~~~~l~~~~~~~~~ 146 (989)
-+++.+..+- ...+..+.... ..+...|+...+.+|..|+.. -|. .-...++-++..+.....
T Consensus 131 -~~~e~~~~vv~~GaIp~Lv~lL---------~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~ 199 (510)
T 3ul1_B 131 -GTSEQTKAVVDGGAIPAFISLL---------ASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDL 199 (510)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHHT---------TCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCG
T ss_pred -CCHHHHHHHHHCCCHHHHHHHH---------cCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccc
Confidence 2445544443 34566666542 135678999999999998642 111 001234555555554321
Q ss_pred ------hHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhc
Q 001968 147 ------VIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRR 220 (989)
Q Consensus 147 ------~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~ 220 (989)
........|..++.. ..+..... ....++..+..+|. ..++++...+..++..
T Consensus 200 ~~~~~~~~~~a~~~L~nl~~~----~~~~~~~~--------------~~~~~lp~L~~LL~---~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 200 STLACGYLRNLTWTLSNLCRN----KNPAPPLD--------------AVEQILPTLVRLLH---HNDPEVLADSCWAISY 258 (510)
T ss_dssp GGSCHHHHHHHHHHHHHHHCC----CSSCCCHH--------------HHHHHHHHHHHHTT---CSCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhhc----ccchhHHH--------------HHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Confidence 111222222222211 00111100 02233333334443 5678888888888876
Q ss_pred cccccc--cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 221 YISWID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 221 ~i~wi~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
....-+ ...+.....++.+..++.. .++.++..|+.+|..++..
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~ 304 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTG 304 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTS
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcC
Confidence 554321 2234556788888888863 5789999999999988753
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.84 E-value=8.3 Score=45.28 Aligned_cols=210 Identities=10% Similarity=0.029 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCc----------hHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH-HHHH
Q 001968 18 IDSMLKSQAVNFCQQIKETPS----------ICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI-RESV 86 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~~----------~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l-r~~l 86 (989)
.++..|..|-..|.++-.... +.......|.++.++++|..|+.+|++. ... .+.+..+ +...
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L-s~~-----~~~~~~i~~~g~ 99 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHH-----REGLLAIFKSGG 99 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-TTS-----HHHHHHHHTTTH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH-hcC-----hhhHHHHHHcCC
Confidence 388999999999988876443 3455556666655789999999999854 321 2333333 2234
Q ss_pred HHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHhhcCCch-hHHHHHHHHHHHHH
Q 001968 87 FSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIW-----SSVFVDFLPQLNKGSM-VIDMFCRVLNSLDD 160 (989)
Q Consensus 87 l~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~W-----p~~~~~l~~~~~~~~~-~~~~~L~iL~~l~E 160 (989)
+..+.... ......++...+.+|..+.... +... ...++.++..++++.. .....+.+|..++.
T Consensus 100 i~~Lv~lL---------~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 100 IPALVKML---------GSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---------hCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 55555542 1245789999999999997643 2211 3567788888876542 23333445444432
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccc-cccccccccHHH
Q 001968 161 ELISLDYPRTADELTVAARIKDAMRQ-QCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID-INLIANDAFIPL 238 (989)
Q Consensus 161 ev~~~~~~~~~~~~~r~~~l~~~l~~-~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~-~~~~~~~~~l~~ 238 (989)
. .. ..+..+.+ ..++.++ .+|.. .....+...++.++......-. ...+.+...++.
T Consensus 170 ~--------~~-------~~~~~i~~~g~v~~Lv----~lL~~--~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 170 G--------NQ-------ESKLIILASGGPQALV----NIMRT--YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 228 (644)
T ss_dssp T--------CH-------HHHHHHHHTTHHHHHH----HHHTT--CCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHH
T ss_pred c--------Cc-------HHHHHHHHcCChHHHH----HHHHc--CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence 1 00 11112222 1233333 45543 2345566666666655432111 122333456777
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 239 LFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 239 l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
+..++.. .++.++..++.+|..+...
T Consensus 229 L~~ll~~--~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 229 LGLHLTD--PSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHTTTTC--SCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhc--CCHHHHHHHHHHHHHHhhc
Confidence 7777653 4788999999999888654
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.34 E-value=9.2 Score=43.63 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=129.2
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc---CC--------chHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcC
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKE---TP--------SICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYT 72 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~---~~--------~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~ 72 (989)
+.+.|..++++ |++.+.+|-+.+.++-. .| .......++|..+.++.+++.|+.+|.+....
T Consensus 78 l~~lv~~l~s~----d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~--- 150 (529)
T 3tpo_A 78 VEDIVKGINSN----NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG--- 150 (529)
T ss_dssp HHHHHHHHTSS----CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC---
Confidence 56677777764 88888888887776532 22 13445567777777789999999999987542
Q ss_pred CCCHHHH-HHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHhhcCCch
Q 001968 73 SMSSEER-NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIW-----SSVFVDFLPQLNKGSM 146 (989)
Q Consensus 73 ~l~~~~~-~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~W-----p~~~~~l~~~~~~~~~ 146 (989)
+++.+ .-+....+..+.... ..+...++...+.+|..|+.. -|..- ...++-++..+.....
T Consensus 151 --~~~~~~~vv~~Gaip~Lv~LL---------~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~ 218 (529)
T 3tpo_A 151 --TSEQTKAVVDGGAIPAFISLL---------ASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDL 218 (529)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHT---------TCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCG
T ss_pred --CHHHHHHHHHCCCHHHHHHHH---------cCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccch
Confidence 33443 344444566666542 135678999999999998642 11100 1234556666654321
Q ss_pred ------hHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhc
Q 001968 147 ------VIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRR 220 (989)
Q Consensus 147 ------~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~ 220 (989)
........|..++.. ..+..... ....++..+..+|. +.++++...++.++..
T Consensus 219 ~~~~~~~~~~a~~~L~nl~~~----~~~~~~~~--------------~~~~~lp~L~~LL~---~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 219 STLACGYLRNLTWTLSNLCRN----KNPAPPLD--------------AVEQILPTLVRLLH---HNDPEVLADSCWAISY 277 (529)
T ss_dssp GGSCHHHHHHHHHHHHHHHCC----CTTCCCHH--------------HHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHhc----ccchhhHH--------------HHhhHHHHHHHHhc---CCcHHHHHHHHHHHHH
Confidence 112222232222211 00110000 02233333334443 5677888888888776
Q ss_pred cccccc--cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHh
Q 001968 221 YISWID--INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 221 ~i~wi~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~ 265 (989)
....-+ ...+.....++.+..++.. +++.++..|+.+|..++.
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHc
Confidence 544321 2234557788888888863 678999999999998875
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.61 E-value=3 Score=41.85 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=114.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHH
Q 001968 41 RICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120 (989)
Q Consensus 41 ~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~ 120 (989)
.....+|.++ ++++|..|+..|.+.....- ...+..++...+..+.+... .+...++...+.++..
T Consensus 5 ~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~g~i~~L~~ll~---------~~~~~v~~~a~~~L~~ 70 (252)
T 4hxt_A 5 EKLVKLLTST-DSETQKEAARDLAEIASGPA----SAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARALAN 70 (252)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHHTSCH----HHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc----HHHHHHHHCCCHHHHHHHHh---------CCCHHHHHHHHHHHHH
Confidence 3455666654 48999999999998866431 22333344456666666521 2457899999999998
Q ss_pred HHHhhcCCCC-----hhhHHHHHHhhcCC-chhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH-HHHHHHH
Q 001968 121 LIYFEYPLIW-----SSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQ-QCVEQIV 193 (989)
Q Consensus 121 l~~~~~p~~W-----p~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~-~~~~~i~ 193 (989)
+... -++.- ...++.++..+.++ +......+.+|..+...- .. .++.+.+ ..++.++
T Consensus 71 l~~~-~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--------~~-------~~~~~~~~~~i~~L~ 134 (252)
T 4hxt_A 71 IASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--------DE-------AIKAIVDAGGVEVLV 134 (252)
T ss_dssp HTTS-CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--------HH-------HHHHHHHTTHHHHHH
T ss_pred HHcC-ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--------HH-------HHHHHHHCCCHHHHH
Confidence 8542 11111 13567777777654 345556666666654211 10 1111211 1133333
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhcccccccc--ccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHh
Q 001968 194 RAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDI--NLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 194 ~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~ 265 (989)
.+|. +.++++...++.++.+....-+. ..+.+...++.+.+++.. +++.++..|+.+|..+..
T Consensus 135 ----~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 135 ----KLLT---STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIAS 199 (252)
T ss_dssp ----HHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTT
T ss_pred ----HHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHc
Confidence 4443 56788999999999987654321 234456788888888863 578999999999998875
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.54 E-value=1.7 Score=52.96 Aligned_cols=237 Identities=14% Similarity=0.180 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhh
Q 001968 437 QVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRY 516 (989)
Q Consensus 437 l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y 516 (989)
.+++.+.+...+.......-.-++||-.++.++...++++.+ ...+|.++.++-.+ ..-......++++++.
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~-----~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVET-----NKWQEKIAILAAFSAM 161 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccc-----cchHHHHHHHHHHHHH
Confidence 344433333333222335567889999999999999987644 24677777766421 1112223333356666
Q ss_pred Hhhhhhc-cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHhHhhhhccccCCcccccC
Q 001968 517 MKFIQEH-TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK-AKLVPFIENILQSLQDTIARFTSMNYASKEL 594 (989)
Q Consensus 517 ~~~l~~~-~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~-~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~ 594 (989)
.+-.... ...++.+++.+.+ +|.+..+.|+.+|..++.++|.-.. ..+.|+++.|+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~--~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~--------------- 224 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSE--TMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD--------------- 224 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC---------------
T ss_pred HHHhHHHHHHhccchhcchHh--hcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC---------------
Confidence 5533211 2357788888887 8988889999999999999998766 4678999999887642
Q ss_pred CCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCC
Q 001968 595 SGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNE 674 (989)
Q Consensus 595 ~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~ 674 (989)
+++ +-|++-.+-+..-+ .+-..+. -.+|.|++.+ .+... ...+. .+....++.++|-+.+
T Consensus 225 --p~~---~~~~~~~l~~~tfv-~~v~~~~-l~~~~p~l~r---~l~~~--------~~~~~--r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 225 --PTE---VPETVHLLGATTFV-AEVTPAT-LSIMVPLLSR---GLNER--------ETGIK--RKSAVIIDNMCKLVED 284 (986)
T ss_dssp --TTH---HHHHHHHHTTCCCC-SCCCHHH-HHHHHHHHHH---HHTSS--------SHHHH--HHHHHHHHHHHTTCCC
T ss_pred --hhh---hHHHHHHhhcCeeE-eeecchh-HHHHHHHHHh---hhccC--------cchhh--eeeEEEEcchhhhcCC
Confidence 111 34444333332221 1222233 3456676643 22110 01112 2345678889988775
Q ss_pred CCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcc
Q 001968 675 RLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGA 725 (989)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~ 725 (989)
+. ...+.+..++|-+..+.+. ..++++|+.+.+++..+.+.-+.
T Consensus 285 ~~------~~~~f~~~l~p~~~~~~~~-~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 285 PQ------VIAPFLGKLLPGLKSNFAT-IADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HH------HHHHHHTTTHHHHHHHTTT-CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HH------HHhhhhhhhhhHHHHHhhc-cCCHHHHHHHHHHHHHHHHhhcc
Confidence 32 2456666777777776654 56789999888888888666443
No 54
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.42 E-value=1.4 Score=44.62 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=118.8
Q ss_pred CchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHH
Q 001968 37 PSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQ 116 (989)
Q Consensus 37 ~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~ 116 (989)
+..|......|.+ .++++|..|+..|++.+... ++..+..++...+..+..... .....++...+.
T Consensus 11 ~~~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~----~~~~~~~~~~g~i~~L~~lL~---------~~~~~v~~~a~~ 76 (252)
T 4db8_A 11 GSELPQMTQQLNS-DDMQEQLSATRKFSQILSDG----NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALW 76 (252)
T ss_dssp TCSHHHHHHHHHS-SCSSHHHHHHHHHHHHHHHH----HHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHH
T ss_pred cchHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC----CchHHHHHHcCcHHHHHHHHc---------CCCHHHHHHHHH
Confidence 4467777788865 56899999999998887751 122223444455666665421 234778999999
Q ss_pred HHHHHHHhhcCCC-----ChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 001968 117 VLVTLIYFEYPLI-----WSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVE 190 (989)
Q Consensus 117 ~la~l~~~~~p~~-----Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~ 190 (989)
++..+... -+.. ....++-++..++++. ......+.+|..|...- . .+ .........++
T Consensus 77 ~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---------~--~~---~~~~~~~~~i~ 141 (252)
T 4db8_A 77 ALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---------N--EQ---IQAVIDAGALP 141 (252)
T ss_dssp HHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---------H--HH---HHHHHHTTHHH
T ss_pred HHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC---------c--hH---HHHHHHCCCHH
Confidence 99988542 1111 1246777788777643 45556666766653321 0 01 01111111233
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhhcccccccc--ccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHh
Q 001968 191 QIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDI--NLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 191 ~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~ 265 (989)
.++ .+|. +.++.+...++.++.+....-+- ..+.+...++.+.+++.. +++.++..|+.+|..++.
T Consensus 142 ~L~----~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 142 ALV----QLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHH----HGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTT
T ss_pred HHH----HHHh---CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhc
Confidence 333 4443 56788999999999887654321 223446788888888864 588999999999999874
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.23 E-value=8.4 Score=39.46 Aligned_cols=128 Identities=11% Similarity=-0.018 Sum_probs=79.2
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIR 83 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr 83 (989)
+...+..+.++ ++..|..|-..|.++. .+.+......+|.. .++.+|..|+..|... .. +.+....+-
T Consensus 25 i~~L~~~L~~~----~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~l-----~~-~~~~~~~l~ 92 (280)
T 1oyz_A 25 DDELFRLLDDH----NSLKRISSARVLQLRG-GQDAVRLAIEFCSD-KNYIRRDIGAFILGQI-----KI-CKKCEDNVF 92 (280)
T ss_dssp HHHHHHHTTCS----SHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC-SSHHHHHHHHHHHHHS-----CC-CTTTHHHHH
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHccC-CchHHHHHHHHHcC-CCHHHHHHHHHHHHHh-----cc-ccccchHHH
Confidence 34455555554 8899999999999886 56788888888864 5688999999888543 11 111112222
Q ss_pred HHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHH
Q 001968 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLN 156 (989)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~ 156 (989)
..|.+.+.+ .....||...+.+++.+... .|...+..++.+...++... .+.......|.
T Consensus 93 ~~L~~~~~~------------d~~~~vr~~a~~aL~~l~~~-~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 93 NILNNMALN------------DKSACVRATAIESTAQRCKK-NPIYSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHHHHHHH------------CSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhc------------CCCHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 222222222 24678999999999998543 23335677777777776543 33333444433
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.29 E-value=8.8 Score=37.28 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=114.0
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIR 83 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr 83 (989)
+...+..+.++ ++..|..|-..|.++.. +.+.......|.+ .++.+|..|+..|...- +++..
T Consensus 21 ~~~L~~~L~~~----~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~-------~~~~~---- 83 (211)
T 3ltm_A 21 VEMYIKNLQDD----SYYVRRAAAYALGKIGD-ERAVEPLIKALKD-EDAWVRRAAADALGQIG-------DERAV---- 83 (211)
T ss_dssp HHHHHHHTTCS----SHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC-SCHHHHHHHHHHHHHHC-------CGGGH----
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC-CCHHHHHHHHHHHHhhC-------CHHHH----
Confidence 44455555554 89999999999998865 5677878888874 46899999998887641 12222
Q ss_pred HHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHH
Q 001968 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDEL 162 (989)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev 162 (989)
..|+..+. .....||...+.++..+. -+..++.+...+.... .+.......|..+.++
T Consensus 84 ~~L~~~l~-------------~~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 142 (211)
T 3ltm_A 84 EPLIKALK-------------DEDGWVRQSAAVALGQIG-------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE- 142 (211)
T ss_dssp HHHHHHTT-------------CSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-
T ss_pred HHHHHHHc-------------CCCHHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-
Confidence 22222222 245678988888888762 2566777777775443 3444444444332110
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHH
Q 001968 163 ISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFEL 242 (989)
Q Consensus 163 ~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~ 242 (989)
+ ..+.+. ..+. +.++.+...+..+++.+ ..+..++.+...
T Consensus 143 -----------------------~-~~~~L~----~~l~---d~~~~vr~~a~~aL~~~---------~~~~~~~~L~~~ 182 (211)
T 3ltm_A 143 -----------------------R-AVEPLI----KALK---DEDGWVRQSAADALGEI---------GGERVRAAMEKL 182 (211)
T ss_dssp -----------------------G-GHHHHH----HHTT---CSSHHHHHHHHHHHHHH---------CSHHHHHHHHHH
T ss_pred -----------------------H-HHHHHH----HHHc---CCCHHHHHHHHHHHHHh---------CchhHHHHHHHH
Confidence 0 123222 3332 55778888888888764 235677777777
Q ss_pred HHhcCCChhHHhHHHHHHHHHHhc
Q 001968 243 ILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 243 l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
+.+ +++.+|..|.++|..+-.+
T Consensus 183 l~d--~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 183 AET--GTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHH--CCHHHHHHHHHHHHC----
T ss_pred HhC--CCHHHHHHHHHHHHhcCCC
Confidence 764 5789999999999876554
No 57
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.92 E-value=38 Score=41.94 Aligned_cols=296 Identities=8% Similarity=0.119 Sum_probs=148.7
Q ss_pred CCchhhhhHHHHHHHHHHHhhhcc-hhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhH
Q 001968 543 PNVHVSRRASYLFMRVVKLLKAKL-VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQ 621 (989)
Q Consensus 543 ~~~~v~~~A~~al~~l~~~~~~~l-~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~ 621 (989)
.+-....++|+++..++..+.+.. .+++++++..+..+..... +.+.+..+..++..+++. ++.--+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~----------~kd~k~~vas~i~~vlgr--Y~~wl~ 558 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKR----------GKDNKAIIASNIMYIVGQ--YPRFLR 558 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSC----------SHHHHHHHHHHHHHHHHH--CHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccccc----------ccchhHHHHHHHHHHHhh--hHHHHH
Confidence 445778999999999986544332 4788888888877664321 123455555566677776 332211
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhc
Q 001968 622 SDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVV 701 (989)
Q Consensus 622 ~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 701 (989)
.=..++.|.++.+-..+... ++ +.... ...++..++...+...+....+...+++.+++..+..+...
T Consensus 559 --~h~~~L~~vl~~L~~~m~~~----~~---~vq~a---A~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~ 626 (1073)
T 3gjx_A 559 --AHWKFLKTVVNKLFEFMHET----HD---GVQDM---ACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICD 626 (1073)
T ss_dssp --HCHHHHHHHHHHHHHHTTCC----ST---THHHH---HHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTT
T ss_pred --hCHHHHHHHHHHHHHHHhcC----CH---HHHHH---HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHh
Confidence 11234455555444433211 11 11111 12233333333222211110111234566666666666665
Q ss_pred CCCChhHhHHHHHHHHHHHhhhcccc--cCchHHHHH-------HHHc----cC----Ch---hHHHHHHHHHHHHHHHh
Q 001968 702 FPKVEPLRCKVTSFIHRMVDTLGASV--FPYLPKALE-------QLLA----ES----EP---KEMAGFLVLLNQLICKF 761 (989)
Q Consensus 702 ~~~~~~i~e~~~~~~~~~~~~l~~~~--~p~l~~l~~-------~ll~----~~----~~---~~~~~~L~l~~~li~~~ 761 (989)
+... .+. ..+.+++.++...+.+. ..++..+++ .++. .. +. +++..++.+.+.++...
T Consensus 627 l~~~-~~~-~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~ 704 (1073)
T 3gjx_A 627 LQPQ-QVH-TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAV 704 (1073)
T ss_dssp CCHH-HHH-HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHH-HHH-HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhc
Confidence 5332 222 37778888888877643 222222222 1221 00 11 34455666666778888
Q ss_pred hhhhHHHHHHhHHHHHHH---HHhhcCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHH
Q 001968 762 NTLVHDILDEVFPAIAGR---IFNIIPRDAFPSGP-GTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDP 837 (989)
Q Consensus 762 ~~~~~~~l~~~~~~l~~~---~~~~l~~~~~~~~~-~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~ 837 (989)
|..+.+.+..+++.+++- +-+.+.+.-..+|+ ...+...+.---++++-++++.+++.+....-.+. ..+++.
T Consensus 705 g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~---~~~i~p 781 (1073)
T 3gjx_A 705 GHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVA---ENFVPP 781 (1073)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHH---HHTSHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHhHHH
Confidence 888888888777765532 11222110000011 11122344555678888999999888763221111 113344
Q ss_pred HHHHHHHhhc----CCCChhhhhHHHHHHHHHHHHhhC
Q 001968 838 IMQLLLYTSC----NHKDYLVRKACVQIFIRLIKDWCA 871 (989)
Q Consensus 838 il~~l~~~~~----~~~~~~~~k~a~~~l~~~i~~~~~ 871 (989)
++..++.-.. .+.|++ .+.+++.+++..+.
T Consensus 782 l~~~vl~dY~~~~p~~r~~e----vL~l~s~iv~k~~~ 815 (1073)
T 3gjx_A 782 LLDAVLIDYQRNVPAAREPE----VLSTMAIIVNKLGG 815 (1073)
T ss_dssp HHHHTHHHHHHSCGGGCCTH----HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCCcccccHH----HHHHHHHHHHHHHh
Confidence 4444332111 234444 46778888888875
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.89 E-value=2 Score=52.31 Aligned_cols=247 Identities=13% Similarity=0.186 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHHhh--hcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHH
Q 001968 549 RRASYLFMRVVKLLK--AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS 626 (989)
Q Consensus 549 ~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~ 626 (989)
..|+.++..+|+... +.+.||+-+++..+.+....+. ..-+...-.|+..++.+ .|++.. .
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~-----------~~v~~aa~~~~~~~~~~--~~~~a~----~ 132 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD-----------KEIQSVASETLISIVNA--VNPVAI----K 132 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS-----------HHHHHHHHHHHHHHHHH--SCGGGH----H
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHHHh--CCHHHH----H
Confidence 899999999996653 3567877666666666654331 11233445567777777 455544 3
Q ss_pred HhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCCh
Q 001968 627 SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVE 706 (989)
Q Consensus 627 ~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 706 (989)
.+++.++..+... .. =+.. ...+.+++.+++..+ .++...+.+++|++...+ |..-.
T Consensus 133 ~~~~~~~~~~~~~--------~k-w~~k----~~~l~~~~~~~~~~~--------~~~~~~~~~~~p~~~~~~--~d~k~ 189 (986)
T 2iw3_A 133 ALLPHLTNAIVET--------NK-WQEK----IAILAAFSAMVDAAK--------DQVALRMPELIPVLSETM--WDTKK 189 (986)
T ss_dssp HHHHHHHHHHHHC--------CC-HHHH----HHHHHHHHHHHHHSH--------HHHHHHHHHHHHHHHHHT--TCSSH
T ss_pred HHHHHHHHHhccc--------cc-hHHH----HHHHHHHHHHHHHhH--------HHHHHhccchhcchHhhc--ccCcH
Confidence 3444444433221 00 0001 133556666664331 135567788888887754 56678
Q ss_pred hHhHHHHHHHHHHHhhhc-ccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhh------hHHHHHHhHHHHHHH
Q 001968 707 PLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTL------VHDILDEVFPAIAGR 779 (989)
Q Consensus 707 ~i~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~------~~~~l~~~~~~l~~~ 779 (989)
++..++..++..++.+++ .++.|++|.++..+..- .+.++. |+..+.- ..|.|. ++.|++.+
T Consensus 190 ~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p---~~~~~~-------~~~l~~~tfv~~v~~~~l~-~~~p~l~r 258 (986)
T 2iw3_A 190 EVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP---TEVPET-------VHLLGATTFVAEVTPATLS-IMVPLLSR 258 (986)
T ss_dssp HHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT---THHHHH-------HHHHTTCCCCSCCCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh---hhhHHH-------HHHhhcCeeEeeecchhHH-HHHHHHHh
Confidence 999999999999999886 46899999999977643 333433 3444433 244443 45566655
Q ss_pred HHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCC--cCChHHHHHHHHHhhcCCCChhhhhH
Q 001968 780 IFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKS--RGYLDPIMQLLLYTSCNHKDYLVRKA 857 (989)
Q Consensus 780 ~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~--~~~~~~il~~l~~~~~~~~~~~~~k~ 857 (989)
-+. .. .|..- |+. . ++..++..+. .++. .+|+..++..+-..+....+|+++..
T Consensus 259 ~l~---~~--------~~~~~------r~~-~-----~~~~n~~~lv-~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~ 314 (986)
T 2iw3_A 259 GLN---ER--------ETGIK------RKS-A-----VIIDNMCKLV-EDPQVIAPFLGKLLPGLKSNFATIADPEAREV 314 (986)
T ss_dssp HHT---SS--------SHHHH------HHH-H-----HHHHHHHTTC-CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHH
T ss_pred hhc---cC--------cchhh------eee-E-----EEEcchhhhc-CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHH
Confidence 542 11 01111 222 1 2222222221 2111 44555566666655667889999888
Q ss_pred HHHHHHHHHHHhh
Q 001968 858 CVQIFIRLIKDWC 870 (989)
Q Consensus 858 a~~~l~~~i~~~~ 870 (989)
|-+.+..+...-+
T Consensus 315 ~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 315 TLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc
Confidence 8888777776544
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.24 E-value=13 Score=35.58 Aligned_cols=180 Identities=15% Similarity=0.104 Sum_probs=114.2
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIR 83 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr 83 (989)
....|..+.++ |+..|..|-..|.++.. +.+.......|. +.++.+|..|+..|...= +++..
T Consensus 16 ~~~~i~~L~~~----~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~-------~~~~~---- 78 (201)
T 3ltj_A 16 VEMYIKNLQDD----SYYVRRAAAYALGKIGD-ERAVEPLIKALK-DEDAWVRRAAADALGQIG-------DERAV---- 78 (201)
T ss_dssp HHHHHHHTTCS----CHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC-------CGGGH----
T ss_pred hHHHHHHhcCC----CHHHHHHHHHHHHhcCC-hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhC-------CHHHH----
Confidence 34556666665 89999999999998864 466777778785 456899999998887541 12222
Q ss_pred HHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHH
Q 001968 84 ESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDEL 162 (989)
Q Consensus 84 ~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev 162 (989)
..|...+. .....||...+.++..+. -+..++.+...+.... .+.......|..+...
T Consensus 79 ~~L~~~l~-------------d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 137 (201)
T 3ltj_A 79 EPLIKALK-------------DEDGWVRQSAAVALGQIG-------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE- 137 (201)
T ss_dssp HHHHHHTT-------------CSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHc-------------CCCHHHHHHHHHHHHHhC-------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-
Confidence 22222222 246789998888888762 2456777777775443 3444444444332110
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHH
Q 001968 163 ISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFEL 242 (989)
Q Consensus 163 ~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~ 242 (989)
. ..+.+. ..+. +.++.+...++.+++.+ ..+..++.+...
T Consensus 138 -----------------------~-~~~~L~----~~l~---d~~~~vr~~A~~aL~~~---------~~~~~~~~L~~~ 177 (201)
T 3ltj_A 138 -----------------------R-AVEPLI----KALK---DEDGWVRQSAADALGEI---------GGERVRAAMEKL 177 (201)
T ss_dssp -----------------------G-GHHHHH----HHTT---CSSHHHHHHHHHHHHHH---------CSHHHHHHHHHH
T ss_pred -----------------------H-HHHHHH----HHHc---CCCHHHHHHHHHHHHHh---------CchhHHHHHHHH
Confidence 0 123222 3333 45778888888888764 235677777777
Q ss_pred HHhcCCChhHHhHHHHHHHHH
Q 001968 243 ILADGLPEQFRGAAVGCVLAV 263 (989)
Q Consensus 243 l~~~~~~~~~~~~a~~~l~~i 263 (989)
+.+ +++.+|..|.+.|..+
T Consensus 178 l~d--~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 178 AET--GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHH--CCHHHHHHHHHHHHHC
T ss_pred HhC--CCHHHHHHHHHHHHHH
Confidence 764 5788999999888654
No 60
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=89.41 E-value=0.95 Score=45.91 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=57.7
Q ss_pred CChhHHHHHHHHHHHhcccCchh-hhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhh------hccCc
Q 001968 454 RNVEEVEAALTLLYALGESMSEE-AMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQY 526 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~-~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~------~~~~~ 526 (989)
.++.-++.++.+++.++..-+.. ..-.....++.++..+- .+++.++...+.+++..+..-. .+...
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 181 (252)
T 4db8_A 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS------SPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh------CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 57888999998888887765432 11112245555655432 3455553333235665554211 12445
Q ss_pred hHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHh
Q 001968 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (989)
Q Consensus 527 L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~ 562 (989)
++.+++ .+.++++.++..|+.+|.++|...
T Consensus 182 i~~L~~------ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 182 LPALVQ------LLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHHHH------GGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHH------HHCCCCHHHHHHHHHHHHHHhcCC
Confidence 555555 444567899999999999998543
No 61
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.98 E-value=2 Score=41.90 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=74.2
Q ss_pred CChhHHHHHHHHHHHhcccCchhh-hhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhh------hccCc
Q 001968 454 RNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQY 526 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~-~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~------~~~~~ 526 (989)
.++...+.++.+++.++..-+... .--....++.++..|- .+++.++...+.+++..+..-. .....
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS------SPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 678888888888888876543321 0001245566665432 3455664333335666553211 12345
Q ss_pred hHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhH-HHHHHHhHhhhhccccCCcccccCCCCcchhHHHH
Q 001968 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFI-ENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE 605 (989)
Q Consensus 527 L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~e 605 (989)
++.++. .+.++++.++..|+.++.+++..........+ ...+..+..++.... .+-+.....
T Consensus 98 i~~L~~------lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----------~~v~~~a~~ 160 (210)
T 4db6_A 98 LPALVQ------LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-----------EQILQEALW 160 (210)
T ss_dssp HHHHHH------HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-----------HHHHHHHHH
T ss_pred HHHHHH------HHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-----------HHHHHHHHH
Confidence 566555 44556789999999999999965443221111 123333444443211 123556667
Q ss_pred HHHHHHcc
Q 001968 606 AIGLLIGM 613 (989)
Q Consensus 606 ai~~li~~ 613 (989)
+++.+...
T Consensus 161 aL~~l~~~ 168 (210)
T 4db6_A 161 ALSNIASG 168 (210)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHcC
Confidence 77777654
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.74 E-value=5.8 Score=38.51 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHH----HHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhh-hhcccccHHHHHH
Q 001968 416 EYRKDLLVLLRSVGRVAPEVTQVFI----RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVP 490 (989)
Q Consensus 416 ~~R~~l~~~l~~i~~i~~~~~l~~i----~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~-~~~~~~~l~~ll~ 490 (989)
+.|......+.+++.-.++....++ .+.+...+.+ .++.-.+.++.+++.++..-+... .--....++.++.
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 103 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHH
Confidence 3455556666666644443322222 2334444433 577888888988888875443221 0001245666666
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh------ccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHh
Q 001968 491 MLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 562 (989)
Q Consensus 491 ~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~------~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~ 562 (989)
.+- .+++.++...+.+++..+..-.. +...++.++. .+.++++.++..|+.+|.++|...
T Consensus 104 lL~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~------ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 104 LLS------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ------LLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HTT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH------HTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHc------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH------HHcCCCHHHHHHHHHHHHHHHcCC
Confidence 432 34566643332356665532111 2334444444 444567899999999999999753
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.58 E-value=17 Score=34.88 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHH
Q 001968 452 ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVL 531 (989)
Q Consensus 452 ~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl 531 (989)
.+.+|..+..++..++.++. ...++.++..+ .++++.++...++.+|++. .++.++.++
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l------~~~~~~vr~~a~~~L~~~~-----~~~~~~~L~ 82 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKAL------KDEDAWVRRAAADALGQIG-----DERAVEPLI 82 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHT------TCSSHHHHHHHHHHHHHHC-----CGGGHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHH------cCCCHHHHHHHHHHHHhhC-----CHHHHHHHH
Confidence 34788888888888776653 13455566543 2467777555444677653 345555555
Q ss_pred HHhhcccCCCCCCchhhhhHHHHHHHHH
Q 001968 532 AAFLDERGIHHPNVHVSRRASYLFMRVV 559 (989)
Q Consensus 532 ~~l~~~~~l~~~~~~v~~~A~~al~~l~ 559 (989)
. .+.++++.||..|+.++.++.
T Consensus 83 ~------~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 83 K------ALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp H------HTTCSSHHHHHHHHHHHHHHC
T ss_pred H------HHcCCCHHHHHHHHHHHHHhC
Confidence 5 455678899999999998764
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=85.83 E-value=59 Score=37.86 Aligned_cols=344 Identities=11% Similarity=0.051 Sum_probs=152.8
Q ss_pred CChhHHHHHHHHHHHhcccCchhh-hhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhh-----ccCch
Q 001968 454 RNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE-----HTQYI 527 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~-~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~-----~~~~L 527 (989)
.++..++.++.+++.++..-.... +......++.++..|-. .+++.++.....++...+.--.. ....+
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-----~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 567888888888888887654221 11122456777766542 12344422221133332221110 12334
Q ss_pred HHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhH-HHHHHHhHhhhhccccCCcccccCCCCcchhHHHHH
Q 001968 528 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFI-ENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEA 606 (989)
Q Consensus 528 ~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~ea 606 (989)
+.++. .+.++++.++..|+.+|.+++......-.... ...+..+..++.... ...+....++
T Consensus 101 ~~Lv~------lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-----------~~~~~~a~~~ 163 (644)
T 2z6h_A 101 PALVK------MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-----------VKFLAITTDC 163 (644)
T ss_dssp HHHHH------HTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-----------HHHHHHHHHH
T ss_pred HHHHH------HHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-----------HHHHHHHHHH
Confidence 44443 45556789999999999999976432111111 223344444443211 1122333445
Q ss_pred HHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHH
Q 001968 607 IGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGL 686 (989)
Q Consensus 607 i~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~ 686 (989)
+..+... +++.+...... -.+..+-.++... +.+ .. ....+.++..++. .+ ....
T Consensus 164 L~~La~~---~~~~~~~i~~~---g~v~~Lv~lL~~~----~~~--~~---~~~a~~~L~nLs~--~~--------~~~~ 218 (644)
T 2z6h_A 164 LQILAYG---NQESKLIILAS---GGPQALVNIMRTY----TYE--KL---LWTTSRVLKVLSV--CS--------SNKP 218 (644)
T ss_dssp HHHHHTT---CHHHHHHHHHT---THHHHHHHHHTTC----CCH--HH---HHHHHHHHHHHTT--CT--------THHH
T ss_pred HHHHHhc---CcHHHHHHHHc---CChHHHHHHHHcC----ChH--HH---HHHHHHHHHHHhc--Cc--------ccHH
Confidence 5555543 33444333321 1122222333221 111 11 1233455555542 11 1111
Q ss_pred -HH-HHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhccc--ccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhh
Q 001968 687 -MF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS--VFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFN 762 (989)
Q Consensus 687 -~~-~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~--~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~ 762 (989)
+. ...++.+..++. ..+..+++.+..++..++...... ..+.+|.++. ++.+-+..-.....+.++.+...-.
T Consensus 219 ~l~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~-lL~~~d~~v~~~a~~aL~~L~~~~~ 295 (644)
T 2z6h_A 219 AIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNY 295 (644)
T ss_dssp HHHHTTHHHHHHTTTT--CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 11 234555555554 345788888888888887653321 1233444444 2222222222334455555543211
Q ss_pred hhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHH
Q 001968 763 TLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLL 842 (989)
Q Consensus 763 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l 842 (989)
+....+.. ...+..+..++... .+.++++......+..+..+....-.. .. .-.-...+..+
T Consensus 296 -~~~~~v~~--~g~v~~Lv~lL~~~-------------~~~~~v~~~a~~aL~nL~~~~~~~~~~-q~-~v~~~~~l~~L 357 (644)
T 2z6h_A 296 -KNKMMVCQ--VGGIEALVRTVLRA-------------GDREDITEPAICALRHLTSRHQEAEMA-QN-AVRLHYGLPVV 357 (644)
T ss_dssp -HHHHHHHH--TTHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHTSSSTTHHHH-HH-HHHHTTHHHHH
T ss_pred -HHHHHHHH--cCCHHHHHHHHHcc-------------CCcHHHHHHHHHHHHHHhcCCchHHHH-HH-HHHHccChHHH
Confidence 11111111 01222333333320 022577888888888775443211000 00 00000123333
Q ss_pred HHhhcCCC-ChhhhhHHHHHHHHHH
Q 001968 843 LYTSCNHK-DYLVRKACVQIFIRLI 866 (989)
Q Consensus 843 ~~~~~~~~-~~~~~k~a~~~l~~~i 866 (989)
+... .++ +..+++.|+.++.++.
T Consensus 358 ~~lL-~~~~~~~v~~~a~~~L~nLa 381 (644)
T 2z6h_A 358 VKLL-HPPSHWPLIKATVGLIRNLA 381 (644)
T ss_dssp HHTT-STTCCHHHHHHHHHHHHHHT
T ss_pred HHHh-CccCchHHHHHHHHHHHHHc
Confidence 3333 433 4578888888777754
No 65
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=85.24 E-value=15 Score=38.17 Aligned_cols=185 Identities=12% Similarity=0.102 Sum_probs=105.1
Q ss_pred hHHHHHHHHhhCCCC--------CCCHHHHHHHHHHHHHHhcCC---------chHHHHHH-HhccCCchHHHHHHHHHH
Q 001968 2 DDLEKAILFSFDESG--------AIDSMLKSQAVNFCQQIKETP---------SICRICIE-KLSLCNIVQVQFWCLQTL 63 (989)
Q Consensus 2 ~~l~~av~~~~~p~~--------~~~~~~r~~A~~~L~~~q~~~---------~~w~~~~~-lL~~~~~~~vr~fa~~~L 63 (989)
+++.+++..+-+|.. ..+.+.|..|-..|.++-++. .++..... +|.+ .++.+|..|+.+|
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 356778888888620 124467888888777766532 35666777 7764 5689999999999
Q ss_pred HHHHhhhcCCCCHHHHH-HHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC---CC--hhhHHHH
Q 001968 64 SEVVRVKYTSMSSEERN-LIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL---IW--SSVFVDF 137 (989)
Q Consensus 64 ~~~I~~~w~~l~~~~~~-~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~---~W--p~~~~~l 137 (989)
.+.... +++.+. .++...+..+.+.... ..+..++.+.+-+|+.++. ..|. .. ...++-|
T Consensus 107 g~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~--------~~~~~v~~~A~~ALsnl~~-~~~~~~~~~~~~ggi~~L 172 (296)
T 1xqr_A 107 GTCSQN-----VAAIQEQVLGLGALRKLLRLLDR--------DACDTVRVKALFAISCLVR-EQEAGLLQFLRLDGFSVL 172 (296)
T ss_dssp HHHHTT-----CHHHHHHHHHTTHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHH
T ss_pred HHHHhC-----CHHHHHHHHHCCCHHHHHHHHcc--------CCCHHHHHHHHHHHHHHHc-CCcHHHHHHHHCCCHHHH
Confidence 988653 334433 3333444554443210 1356899999999999964 2221 11 1355566
Q ss_pred HHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCHHHHHHHH
Q 001968 138 LPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQ-QCVEQIVRAWYDIVSMYRSSDFEVCTGVL 215 (989)
Q Consensus 138 ~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~-~~~~~i~~~~~~iL~~~~~~~~~l~~~~L 215 (989)
+..+++++ ....-....|..+...- . ..++.+.+ ..++.++ .+|. ..++++...++
T Consensus 173 ~~lL~~~d~~v~~~A~~aLs~L~~~~--------~-------~~~~~vv~~g~i~~Lv----~LL~---~~d~~v~~~al 230 (296)
T 1xqr_A 173 MRAMQQQVQKLKVKSAFLLQNLLVGH--------P-------EHKGTLCSMGMVQQLV----ALVR---TEHSPFHEHVL 230 (296)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHC--------G-------GGHHHHHHTTHHHHHH----HHHT---SCCSTHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCC--------h-------HHHHHHHHcCCHHHHH----HHHc---CCChhHHHHHH
Confidence 66666543 22233444444443320 0 01112222 2244444 4444 44677888888
Q ss_pred HHhhcccc
Q 001968 216 DCMRRYIS 223 (989)
Q Consensus 216 ~~l~~~i~ 223 (989)
.++.+.+.
T Consensus 231 ~aL~~l~~ 238 (296)
T 1xqr_A 231 GALCSLVT 238 (296)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88876543
No 66
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.15 E-value=26 Score=44.37 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=66.9
Q ss_pred HHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcC-C---------CChhHhHHHHHHHHHHHhhhcccccC
Q 001968 660 QIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF-P---------KVEPLRCKVTSFIHRMVDTLGASVFP 729 (989)
Q Consensus 660 ~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---------~~~~i~e~~~~~~~~~~~~l~~~~~p 729 (989)
..+.++++++.-+... |. .+..+++.+...+... + .+.++|.++|.++.+++..+++.+.|
T Consensus 551 ~~i~~l~~l~~~~~~~------p~---~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p 621 (1204)
T 3a6p_A 551 CVLTNVSALFPFVTYR------PE---FLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP 621 (1204)
T ss_dssp HHHHHHHHHGGGGGTC------GG---GHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHHHHhcC------ch---HHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4567777777665532 22 3444455444433221 1 24579999999999999999999999
Q ss_pred chHHHHHHH---HccCC---hhHHHHHHHHHHHHHHHhhhh--hHHHHHHhHHHHHHHH
Q 001968 730 YLPKALEQL---LAESE---PKEMAGFLVLLNQLICKFNTL--VHDILDEVFPAIAGRI 780 (989)
Q Consensus 730 ~l~~l~~~l---l~~~~---~~~~~~~L~l~~~li~~~~~~--~~~~l~~~~~~l~~~~ 780 (989)
|++.+...+ +..+. ..+...+...++.+...++.. ...++..++.|+++..
T Consensus 622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w 680 (1204)
T 3a6p_A 622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIW 680 (1204)
T ss_dssp GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999988754 33333 444334434444443333332 3445666777776543
No 67
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=84.11 E-value=60 Score=36.45 Aligned_cols=210 Identities=11% Similarity=0.031 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHHHhcC----------CchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHH-HHHH
Q 001968 18 IDSMLKSQAVNFCQQIKET----------PSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLI-RESV 86 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~----------~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~l-r~~l 86 (989)
.++..|..|-..|..+-.. +++......+|.++.+++++..|+..|.+.-. .++.+..+ +...
T Consensus 29 ~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~------~~~~~~~i~~~g~ 102 (529)
T 1jdh_A 29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH------HREGLLAIFKSGG 102 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT------SHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc------CchhHHHHHHcCC
Confidence 4899999999999877543 34556666777666678999999999997422 12333333 3334
Q ss_pred HHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHhhcCCc-hhHHHHHHHHHHHHH
Q 001968 87 FSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIW-----SSVFVDFLPQLNKGS-MVIDMFCRVLNSLDD 160 (989)
Q Consensus 87 l~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~W-----p~~~~~l~~~~~~~~-~~~~~~L~iL~~l~E 160 (989)
+..+.... ..+...++...+.++..+... -+... ...++.++..+.++. .........|..+..
T Consensus 103 i~~L~~lL---------~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 103 IPALVKML---------GSPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHT---------TCSCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---------cCCCHHHHHHHHHHHHHHhcC-CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 55555542 123467888999999998653 22211 356777888887654 333334445444432
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccc-cccccccccHHH
Q 001968 161 ELISLDYPRTADELTVAARIKDAMRQ-QCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID-INLIANDAFIPL 238 (989)
Q Consensus 161 ev~~~~~~~~~~~~~r~~~l~~~l~~-~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~-~~~~~~~~~l~~ 238 (989)
. .. ..+..+.. ..++.++ .+|.. .........+..++......-+ ...+.+...++.
T Consensus 173 ~--------~~-------~~~~~i~~~~~i~~L~----~ll~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 173 G--------NQ-------ESKLIILASGGPQALV----NIMRT--YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231 (529)
T ss_dssp T--------CH-------HHHHHHHHTTHHHHHH----HHHHH--CCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHH
T ss_pred C--------CH-------HHHHHHHHCCCHHHHH----HHHHh--CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence 0 00 11112222 1233333 44443 2344555556666554432211 122334567777
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 239 LFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 239 l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
+...+.. .+++++..|+.+|..+...
T Consensus 232 L~~ll~~--~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 232 LGLHLTD--PSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHTTTTS--SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhC--CChHHHHHHHHHHHHHhcC
Confidence 7777753 4788999999999888754
No 68
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=82.02 E-value=92 Score=37.11 Aligned_cols=548 Identities=11% Similarity=0.068 Sum_probs=253.7
Q ss_pred ccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchh-hhHhhhhhhhhhhccccCCcchHHHHHHHHHHHHH
Q 001968 230 IANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSK-LNLLQTLQISRVFGLVSEDGESELVSKVAALLTGY 308 (989)
Q Consensus 230 ~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k-~~li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~ 308 (989)
+.+++-+..+.+++.. ..++++..+|+..|.+++... .++ ..++..++++.+...+.. ++++.....+.++..+
T Consensus 45 i~~~~~~~~~~~l~~~-~~~~~~~~~~~r~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 119 (810)
T 3now_A 45 LYKDHCIAKVASLTKV-EKDQDIYVNMVHLVAALCENS---VERTKGVLTELGVPWFMRVLDQ-KHENCVSTAQFCLQTI 119 (810)
T ss_dssp HHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHSCHHHHHHHHHC-CSTTHHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHhc-cCchhHHHHHHHHHHHHHhcc---HHHHHHHHHHcCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 4445556666666652 357999999999999999754 122 235555665555443333 5667777788877777
Q ss_pred HHHHHHHHhhccc-hh--hHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHH-hccCC-CChHH--HhHhHHH
Q 001968 309 AMEVLDCVKRLNA-EN--ANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVAT-MKSLS-PLKEE--QRLHAGQ 381 (989)
Q Consensus 309 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~--~~~~~~~ 381 (989)
+..+.+.-..... ++ .-......+..++..+++.+.+..++. .......+.+.. ..... .+... ...-+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 197 (810)
T 3now_A 120 LNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG--AARDGVIELITRNVHYTALEWAERLVEIRGLCR 197 (810)
T ss_dssp HHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH--HHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHH
T ss_pred HHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh--hhHHHHHHHHHHhCCccccccccchhhHhhHHH
Confidence 7665432111100 01 000111345566666777777666654 333333333321 11111 11111 1123445
Q ss_pred HHHHHHHHcc--cCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhh-C----hHHHHHHHHHHHHHhhcCCCCC
Q 001968 382 ILEVILTQIR--YDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRV-A----PEVTQVFIRNSLANAVTFSADR 454 (989)
Q Consensus 382 ll~~l~~k~~--~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i-~----~~~~l~~i~~~l~~~~~~~~~~ 454 (989)
++.+.-.--. ||.... . ++ +.|....-.+..++.- . .+...+.+...+...+.. .
T Consensus 198 ~l~v~~~~~~~~~~~~~~----~------~~-----~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 259 (810)
T 3now_A 198 LLDVCSELEDYKYESAMD----I------TG-----SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLA---P 259 (810)
T ss_dssp HHHHHTCCSSSCCSSCCC----C------CT-----THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSS---C
T ss_pred HHHHHhcCccccccccCC----C------Ch-----hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhcc---C
Confidence 5554433111 121110 0 11 2333333333333221 1 012222222222222211 1
Q ss_pred ChhH-HHHHHHHHHHhcccCchh--hhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHH
Q 001968 455 NVEE-VEAALTLLYALGESMSEE--AMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVL 531 (989)
Q Consensus 455 ~w~~-~Ea~l~~l~~i~e~~~~~--~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl 531 (989)
.-.+ +.| +.++.++..+.++. ..-.....++.++..+- .+++.++....++++.-+.--....-....-+
T Consensus 260 ~~~~~~~a-~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~------s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 260 DMESKVRV-TVAITALLNGPLDVGNQVVAREGILQMILAMAT------TDDELQQRVACECLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp CHHHHHHH-HHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHH------SSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred ChHhHHHH-HHHHHHHhcCCHHHHHHHHhccchHHHHHHHhC------CCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence 2211 222 33444444444332 01112356777776554 34666644443455554333111111111112
Q ss_pred HHhhcccCCCCCCchhhhhHHHHHHHHHHHhh-----hcch-hhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHH
Q 001968 532 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLK-----AKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE 605 (989)
Q Consensus 532 ~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~-----~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~e 605 (989)
+.|.. .+...++.+|..|..+|.++..... ..+. .-+++++..+..++..... ..+.+....|
T Consensus 333 ~~L~~--Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~---------d~~v~~~Ave 401 (810)
T 3now_A 333 DILKR--LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGK---------DKDIRRWAAD 401 (810)
T ss_dssp HHHHH--HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSC---------CSSHHHHHHH
T ss_pred HHHHH--HHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCC---------CHHHHHHHHH
Confidence 33333 3344567899999999988875322 2222 2367777878777764310 1345778899
Q ss_pred HHHHHHccCCCChhhHHHHH--HHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCC-------
Q 001968 606 AIGLLIGMEDVPPEKQSDYL--SSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERL------- 676 (989)
Q Consensus 606 ai~~li~~~~~~~~~~~~~l--~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~------- 676 (989)
+++++-.. ++.+.... ...+.+++.-+ ... + ... ....+.+++.++.+.....
T Consensus 402 aLayLS~~----~~vk~~lv~d~g~Ip~LV~LL----~s~----d---~~i---~~~al~~L~NLt~~~d~q~~~~~l~~ 463 (810)
T 3now_A 402 GLAYLTLD----AECKEKLIEDKASIHALMDLA----RGG----N---QSC---LYGVVTTFVNLCNAYEKQEMLPEMIE 463 (810)
T ss_dssp HHHHHTTS----HHHHHHHHHCHHHHHHHHHHH----HTT----C---GGG---HHHHHHHHHHHTTCSCCCCCCCSCGG
T ss_pred HHHHHhCC----cHHHHHHHHccchHHHHHHHh----CCC----C---hHH---HHHHHHHHHHHcCCchhhhhhHHHHH
Confidence 99888543 45555554 24556555433 221 1 111 1245677777776542110
Q ss_pred --------cCCCcC-----c----hHHHH-HHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhh--cccc--cCchHHH
Q 001968 677 --------VTSSRP-----A----IGLMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL--GASV--FPYLPKA 734 (989)
Q Consensus 677 --------~~~~~~-----~----~~~~~-~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l--~~~~--~p~l~~l 734 (989)
++...+ . +..++ ...++.+..++. ..+..+++.+..++..+...- ...+ ...+|++
T Consensus 464 la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~L 541 (810)
T 3now_A 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK--TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKAL 541 (810)
T ss_dssp GTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHH
T ss_pred HHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 000000 0 01111 135566667776 356889999999999886421 1112 2446777
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHHHhhhhh-H--HHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 001968 735 LEQLLAESEPKEMAGFLVLLNQLICKFNTLV-H--DILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLY 811 (989)
Q Consensus 735 ~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~-~--~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~ 811 (989)
+..+-... ..-.....+.++.++..-..+. . ....+.++++ ..+|.... + ...+.+..
T Consensus 542 v~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppL----v~LL~~~~----------~----~l~~~eAl 602 (810)
T 3now_A 542 LRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPL----LNLLQQDC----------T----ALENFESL 602 (810)
T ss_dssp HHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHH----HHTTSTTS----------C----HHHHHHHH
T ss_pred HHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHH----HHHhCCCC----------c----HHHHHHHH
Confidence 77554332 2222344455555544211111 0 0112234444 45665310 0 11112223
Q ss_pred HHHHHHHhcCCC--ccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHH
Q 001968 812 TFLHVIATHDLS--SVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK 867 (989)
Q Consensus 812 ~ll~~~~~~~~~--~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~ 867 (989)
.-+..+....-. ..++. .+.++.+...+ .+.++.+++.|+..+.++..
T Consensus 603 ~AL~NLa~~~d~~~~~Ii~---aG~l~~Lv~LL-----~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 603 MALTNLASMNESVRQRIIK---EQGVSKIEYYL-----MEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HHHHHHTTSCHHHHHHHHH---TTHHHHHHHHH-----HSCCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHH---cCCHHHHHHHH-----cCCCHHHHHHHHHHHHHHhC
Confidence 333344332100 00111 12344444444 57788999999999998764
No 69
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.04 E-value=19 Score=39.32 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=36.4
Q ss_pred HhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH
Q 001968 517 MKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (989)
Q Consensus 517 ~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~ 561 (989)
++|++.-|++-..+++.+++ ...+.+..||..|...|-.||++
T Consensus 53 ~kffk~FP~l~~~Ai~a~lD--LcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 53 PKFFKHFPELADSAINAQLD--LCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHHGGGCGGGHHHHHHHHHH--HHTCSSHHHHHHHHHHGGGGCCT
T ss_pred HHHHhhChhhHHHHHHHHHH--HHhcccHHHHHHHHHhhHHHhhh
Confidence 45566678899999999998 77788889999999999988887
No 70
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=79.36 E-value=46 Score=33.72 Aligned_cols=114 Identities=9% Similarity=-0.013 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHhcCCchHHHHHHHh----ccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 001968 19 DSMLKSQAVNFCQQIKETPSICRICIEKL----SLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCEL 94 (989)
Q Consensus 19 ~~~~r~~A~~~L~~~q~~~~~w~~~~~lL----~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~ 94 (989)
++..|..|-..|.++...+....-...+| .++.++.||..++..|...-... + ..... ++..+....
T Consensus 67 ~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~----~-~~~~~----~~~~L~~~l 137 (280)
T 1oyz_A 67 NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN----P-IYSPK----IVEQSQITA 137 (280)
T ss_dssp SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC----G-GGHHH----HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----C-cccHH----HHHHHHHHh
Confidence 88999999999999886655544333333 34567899999999988653221 0 01112 233333321
Q ss_pred hcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHH
Q 001968 95 VDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNS 157 (989)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~ 157 (989)
......||...+.++..+.. +..++.++..+..+. .+.......|..
T Consensus 138 ---------~d~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 138 ---------FDKSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAINI 185 (280)
T ss_dssp ---------TCSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ---------hCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 12467899988888876632 346677777766543 334444444433
No 71
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=79.06 E-value=57 Score=32.89 Aligned_cols=169 Identities=13% Similarity=0.115 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHh----hc
Q 001968 51 NIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYF----EY 126 (989)
Q Consensus 51 ~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~----~~ 126 (989)
++..-+.=|+..|...+.. .++.-...-+.++.|+.--+ ...+.-|..+...++..++.+ +|
T Consensus 58 ~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~---------~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRF---------FETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHT---------TSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566777788888887664 23333334444677766321 123555777777777776543 23
Q ss_pred CCC---ChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001968 127 PLI---WSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSM 202 (989)
Q Consensus 127 p~~---Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~ 202 (989)
.-. =..+++.++..++.+. .+.+..-.+++.+++ + .....++..+...
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-v------------------------~~~~~v~~~l~~g--- 175 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-V------------------------VGPLKMTPMLLDA--- 175 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-H------------------------HCHHHHHHHHHHG---
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-H------------------------CCHHHHHHHHHHH---
Confidence 221 1345666666654432 233333333333321 1 0123344443333
Q ss_pred hccCCHHHHHHHHHHhhccccccccccccccccH---HHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 001968 203 YRSSDFEVCTGVLDCMRRYISWIDINLIANDAFI---PLLFELILADGLPEQFRGAAVGCVLAVVSK 266 (989)
Q Consensus 203 ~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l---~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~ 266 (989)
..+.|...+..++.++.+.++--... ....+ +.+..++.+ .+..+|++|+.|++++...
T Consensus 176 ~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 176 LKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHH
Confidence 33567888888888888887643332 13355 777777763 6899999999999988653
No 72
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=78.74 E-value=19 Score=36.86 Aligned_cols=124 Identities=13% Similarity=0.163 Sum_probs=74.7
Q ss_pred CCChhHHHHHHHHHHHhcccCchhhhh--cccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHH
Q 001968 453 DRNVEEVEAALTLLYALGESMSEEAMR--TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVV 530 (989)
Q Consensus 453 ~~~w~~~Ea~l~~l~~i~e~~~~~~~~--~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~v 530 (989)
..+..-.+.++-++..+.+.+...... .....+..+++.|+...+ ..+.+.+.-...+++-.+.+ .......+
T Consensus 66 DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~----~~~~~~~~ 140 (278)
T 4ffb_C 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCG----LDTSITQS 140 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHH----TSSSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHH----hcCcHHHH
Confidence 367788888898888888776542110 011234555666553222 23444442222223332222 12235667
Q ss_pred HHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc---hhhHHHHHHHhHhhhhc
Q 001968 531 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL---VPFIENILQSLQDTIAR 583 (989)
Q Consensus 531 l~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l---~p~~~~il~~l~~~l~~ 583 (989)
++.++. ++.+.+|+++..++..+.++.+..+... .+.++.++..+..++..
T Consensus 141 ~e~l~~--~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d 194 (278)
T 4ffb_C 141 VELVIP--FFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH 194 (278)
T ss_dssp HHHHGG--GGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC
T ss_pred HHHHHH--HHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC
Confidence 788887 8888999999999999999998876443 34667777777666653
No 73
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=77.54 E-value=24 Score=33.73 Aligned_cols=94 Identities=10% Similarity=0.193 Sum_probs=60.2
Q ss_pred CchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHH
Q 001968 525 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIF 604 (989)
Q Consensus 525 ~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~ 604 (989)
+.+|+++..++. +-+.. ..+|+.|+..+..+|+.+...-...-+.++..+...+.+.. ..-...|
T Consensus 87 ~LipsvLtCll~-k~l~~--~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~------------~~l~t~Y 151 (196)
T 4atg_A 87 QILPSLLTCVIG-KSIVD--DDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN------------RSEDSQY 151 (196)
T ss_dssp HHHHHHHHHHHC-TTCCC--HHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT------------SCHHHHH
T ss_pred HHHHHHHHHHHh-cccCH--HHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC------------CChHHHH
Confidence 457888888875 33321 27999999999999999987665555667777766664321 1234557
Q ss_pred HHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHH
Q 001968 605 EAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTML 640 (989)
Q Consensus 605 eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~ 640 (989)
.|+..+-.. + . +.+..++-|-+..+.+.+
T Consensus 152 GAi~GL~~l-G--~----~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 152 GALYCLSIL-S--K----NVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp HHHHHHHHH-C--H----HHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-H--H----HHHHHhhhcCHHHHHHHH
Confidence 666654333 2 2 355666767777666544
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=76.00 E-value=23 Score=33.22 Aligned_cols=164 Identities=10% Similarity=0.143 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCC
Q 001968 417 YRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTK 496 (989)
Q Consensus 417 ~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~ 496 (989)
.|+....++..+..-.|++.-+.+...+.-.-.+-+-+--+++-. .++.++..-|+ .+..+++.++.+-
T Consensus 48 V~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~---a~G~la~i~Pe--------~v~~vVp~lfany 116 (253)
T 2db0_A 48 VVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAK---AFGQMAKEKPE--------LVKSMIPVLFANY 116 (253)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHH---HHHHHHHHCHH--------HHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHH---HHhHHHHhCHH--------HHHhhHHHHHHHH
Confidence 455555566666665666655544433221111100001122222 33555544332 3444555555321
Q ss_pred CCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHH
Q 001968 497 LPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQS 576 (989)
Q Consensus 497 ~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~ 576 (989)
-.+++.-.+.+.| ++++. ...+|..++.+..-+++ -+.+++..=+..|-.-+..+.+.....+.||++.++
T Consensus 117 rigd~kikIn~~y--aLeeI---aranP~l~~~v~rdi~s--mltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~-- 187 (253)
T 2db0_A 117 RIGDEKTKINVSY--ALEEI---AKANPMLMASIVRDFMS--MLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRII-- 187 (253)
T ss_dssp CCCSHHHHHHHHH--HHHHH---HHHCHHHHHHHHHHHHH--HTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH--
T ss_pred hcCCccceecHHH--HHHHH---HHhChHHHHHHHHHHHH--HhcCCChHHHHHHHHHHHHHhccCccccCcchHHHH--
Confidence 1222333334566 56543 34578888888888876 555555333333322222222233344456655543
Q ss_pred hHhhhhccccCCcccccCCCCcchhHHHHHHHHHHcc
Q 001968 577 LQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 613 (989)
Q Consensus 577 l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~ 613 (989)
.++....+ --+....|+++++...
T Consensus 188 --aLL~D~de-----------iVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 188 --NLLHDGDE-----------IVRASAVEALVHLATL 211 (253)
T ss_dssp --GGGGCSSH-----------HHHHHHHHHHHHHHTS
T ss_pred --HHHcCcch-----------hhhHHHHHHHHHHHHc
Confidence 44432211 0144567888777654
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=72.19 E-value=93 Score=31.98 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=73.9
Q ss_pred CCChhHHHHHHHHHHHhcccCchhh-hhcccccHHHHHHHHHhCCCCCCCCchHH--HHHHHHHHhhHhhhhh------c
Q 001968 453 DRNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVA--LVYLETVTRYMKFIQE------H 523 (989)
Q Consensus 453 ~~~w~~~Ea~l~~l~~i~e~~~~~~-~~~~~~~l~~ll~~ll~~~~~~~~~~~v~--~~~~~~lg~y~~~l~~------~ 523 (989)
+.+..-++.|..+++.++..-+... .--....++.++..|-. .+.+.+. ..+ +++..++-... .
T Consensus 93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~-----~~~~~v~~~A~~--ALsnl~~~~~~~~~~~~~ 165 (296)
T 1xqr_A 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR-----DACDTVRVKALF--AISCLVREQEAGLLQFLR 165 (296)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-----CSCHHHHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc-----CCCHHHHHHHHH--HHHHHHcCCcHHHHHHHH
Confidence 3667788889988888876543221 00022567777775542 1234442 223 55554432111 1
Q ss_pred cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhH-HHHHHHhHhhhhccccCCcccccCCCCcchhH
Q 001968 524 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFI-ENILQSLQDTIARFTSMNYASKELSGSEDGSH 602 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 602 (989)
..-++.++. .+.++++.++..||.++..++..-.....-.+ ...+..+..++.... .+-+..
T Consensus 166 ~ggi~~L~~------lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d-----------~~v~~~ 228 (296)
T 1xqr_A 166 LDGFSVLMR------AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH-----------SPFHEH 228 (296)
T ss_dssp TTHHHHHHH------HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC-----------STHHHH
T ss_pred CCCHHHHHH------HHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC-----------hhHHHH
Confidence 123444444 33446789999999999999986332211111 123333334443221 234667
Q ss_pred HHHHHHHHHcc
Q 001968 603 IFEAIGLLIGM 613 (989)
Q Consensus 603 l~eai~~li~~ 613 (989)
...+++.++..
T Consensus 229 al~aL~~l~~~ 239 (296)
T 1xqr_A 229 VLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 78888888766
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=69.39 E-value=7.5 Score=34.49 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHH
Q 001968 454 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 533 (989)
Q Consensus 454 ~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~ 533 (989)
.+|..+..++.+++.++. . ..++.++..+- ++++.|+....+.+|++. .+ .+++.
T Consensus 54 ~~~~vR~~A~~aL~~~~~---~-------~a~~~L~~~L~------d~~~~VR~~A~~aL~~~~-----~~----~a~~~ 108 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQD---E-------RAVEPLIKLLE------DDSGFVRSGAARSLEQIG-----GE----RVRAA 108 (131)
T ss_dssp SCHHHHHHHHHHHGGGCS---H-------HHHHHHHHHHH------HCCTHHHHHHHHHHHHHC-----SH----HHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---H-------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC-----cH----HHHHH
Confidence 678888888876665542 1 23555555442 467788655545677664 22 34444
Q ss_pred hhcccCCCCCCchhhhhHHHHHHH
Q 001968 534 FLDERGIHHPNVHVSRRASYLFMR 557 (989)
Q Consensus 534 l~~~~~l~~~~~~v~~~A~~al~~ 557 (989)
|.. .+.++++.||..|+.+|.+
T Consensus 109 L~~--~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 109 MEK--LAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHH--HTTSCCTHHHHHHHHHGGG
T ss_pred HHH--HHhCCCHHHHHHHHHHHHh
Confidence 444 5556788999999988754
No 77
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=69.33 E-value=1.9e+02 Score=34.41 Aligned_cols=150 Identities=16% Similarity=0.160 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccc-------cCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhh
Q 001968 690 QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV-------FPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFN 762 (989)
Q Consensus 690 ~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~-------~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~ 762 (989)
..++.+..++. ..+...++.+..++.+++..-.++. ...+|+++..|-.+.+.....+.+..++.+... .
T Consensus 536 Gaip~Lv~LL~--s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~ 612 (810)
T 3now_A 536 GGVKALLRMAL--EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-N 612 (810)
T ss_dssp THHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-C
T ss_pred CCHHHHHHHHc--cCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-C
Confidence 45666666665 3456778888888888876533221 234566665322111111122455555555531 1
Q ss_pred hhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccCCCCcCChHHHHH
Q 001968 763 TLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSV--FLSPKSRGYLDPIMQ 840 (989)
Q Consensus 763 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~--~~s~~~~~~~~~il~ 840 (989)
++....+-. ...+.++..++.. .++.+++.....+..++.+. ... +.. +. ..+.
T Consensus 613 d~~~~~Ii~--aG~l~~Lv~LL~s---------------~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~--~~----g~l~ 668 (810)
T 3now_A 613 ESVRQRIIK--EQGVSKIEYYLME---------------DHLYLTRAAAQCLCNLVMSE-DVIKMFEG--NN----DRVK 668 (810)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHS---------------CCTTHHHHHHHHHHHHTTSH-HHHHHHHS--SS----SHHH
T ss_pred HHHHHHHHH--cCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHHhCCh-HHHHHHHh--cc----CcHH
Confidence 111111111 0112233344432 23567888888888887632 111 111 11 2444
Q ss_pred HHHHhhcCCCChhhhhHHHHHHHHHHH
Q 001968 841 LLLYTSCNHKDYLVRKACVQIFIRLIK 867 (989)
Q Consensus 841 ~l~~~~~~~~~~~~~k~a~~~l~~~i~ 867 (989)
.++... ++.+..+++.|..++..+..
T Consensus 669 ~Lv~LL-~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 669 FLALLC-EDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHGG-GCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHhC
Confidence 554444 67899999999999998876
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=68.73 E-value=29 Score=32.57 Aligned_cols=116 Identities=9% Similarity=0.196 Sum_probs=77.5
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCCCCCCCCchHH-HHHHHHHHhhHhhhhhc
Q 001968 445 ANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVA-LVYLETVTRYMKFIQEH 523 (989)
Q Consensus 445 ~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~~v~-~~~~~~lg~y~~~l~~~ 523 (989)
...++.....-|....-++..+..+++..++- -...+..++.++-.+ ..-|+-+ +.- .+|..+ .-+
T Consensus 35 ~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el----~epl~~kL~vm~~ks----EaIpltqeIa~--a~G~la---~i~ 101 (253)
T 2db0_A 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDL----YEPMLKKLFSLLKKS----EAIPLTQEIAK--AFGQMA---KEK 101 (253)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHHC----CSHHHHHHHHH--HHHHHH---HHC
T ss_pred HHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH----HHHHHHHHHHHHhhc----ccCchHHHHHH--HHhHHH---HhC
Confidence 33333345577999999999999998887653 123445555554421 2224421 222 355444 348
Q ss_pred cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHH
Q 001968 524 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQ 575 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~ 575 (989)
|+.+.++++.+|. ..+-.+++.+---+|++.+|++..+..+..-+.+|+.
T Consensus 102 Pe~v~~vVp~lfa--nyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~s 151 (253)
T 2db0_A 102 PELVKSMIPVLFA--NYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMS 151 (253)
T ss_dssp HHHHHHHHHHHHH--HSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH--HHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999998 4544578999999999999999987766656655543
No 79
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=68.06 E-value=20 Score=36.57 Aligned_cols=109 Identities=8% Similarity=0.031 Sum_probs=59.3
Q ss_pred CCCChhHHHHHHHHHHHhcccCchhhhhcc-cccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc-------
Q 001968 452 ADRNVEEVEAALTLLYALGESMSEEAMRTG-AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH------- 523 (989)
Q Consensus 452 ~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~-~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~------- 523 (989)
.+.+|..+..++-.+..+-+..+.....+. ...+..+...+- ....+++..|....++++..+...+...
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lk--k~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFA--QYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHH--HHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 348999999998766654443322111100 011211111111 1123677777555555676665543211
Q ss_pred cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhh
Q 001968 524 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 563 (989)
Q Consensus 524 ~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~ 563 (989)
..+...+++.+++ .++.++.+.++..|..++..++..+.
T Consensus 97 ~~~~~~~l~~lve-K~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 97 ITLISTWTPLLVE-KGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp HHHHHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 2245566666665 45667778899999999988887654
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=67.47 E-value=98 Score=30.40 Aligned_cols=198 Identities=12% Similarity=0.041 Sum_probs=120.1
Q ss_pred HHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcCCCcccCCCCh
Q 001968 28 NFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESP 107 (989)
Q Consensus 28 ~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~ 107 (989)
+..+-.+.+++......++|. ..++.++.=|+++|++.++. ++...+...-+.+++-+.... .+..
T Consensus 23 ~a~ela~~~e~~l~~L~~LL~-dkD~~vk~raL~~LeellK~----~~~~l~~~~~e~~Ld~iI~ll---------k~~d 88 (265)
T 3b2a_A 23 DAVSLALEDKRALFLILELAG-EDDETTRLRAFVALGEILKR----ADSDLRMMVLERHLDVFINAL---------SQEN 88 (265)
T ss_dssp HHHHHHHHCHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTC---------CSTT
T ss_pred HHHHHHHhchhHHHHHHHHHh-ccchHHHHHHHHHHHHHHHh----ccccccHHHHHHHHHHHHHHH---------hccc
Confidence 334556667778888888884 56789999999999999986 444555555555666666541 2345
Q ss_pred HHHHHHHHHHHHHHHHhhcCC---CChhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 001968 108 AFIRNKLAQVLVTLIYFEYPL---IWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAM 184 (989)
Q Consensus 108 ~~v~~kl~~~la~l~~~~~p~---~Wp~~~~~l~~~~~~~~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l 184 (989)
.-|.=+...++-.+.. ..|- .+.-....+.+...++..... .+.+|.++...+.
T Consensus 89 Ekval~A~r~L~~LLe-~vpL~~~~y~Kl~~aL~dlik~~~~il~------~eaae~Lgklkv~---------------- 145 (265)
T 3b2a_A 89 EKVTIKALRALGYLVK-DVPMGSKTFLKAAKTLVSLLESPDDMMR------IETIDVLSKLQPL---------------- 145 (265)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCHHHHHHHHHHHHHHTTSCCHHHH------HHHHHHHHHCCBS----------------
T ss_pred hhHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhcCCCchHH------HHHHHHhCcCCcc----------------
Confidence 5566677778877754 3332 333344444455554432211 1244444332110
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHH
Q 001968 185 RQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVV 264 (989)
Q Consensus 185 ~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~ 264 (989)
. ..+.+.+.+..++. +.+.++..+++..+....+.-.-..+. .+.+.-+-.++. ..++.+++.|++.+-+|+
T Consensus 146 -~-~~~~V~~~l~sLl~---Skd~~vK~agl~~L~eia~~S~D~~i~-~~I~~eI~elL~--~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 146 -E-DSKLVRTYINELVV---SPDLYTKVAGFCLFLNMLNSSADSGHL-TLILDEIPSLLQ--NDNEFIVELALDVLEKAL 217 (265)
T ss_dssp -C-CCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHGGGCSSCCCG-GGTTTTHHHHHT--CSCHHHHHHHHHHHHHHT
T ss_pred -c-chHHHHHHHHHHHh---CCChhHHHHHHHHHHHhhcccCCHHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 0 25667777777774 568888888888887765543211111 122222334444 368999999999999999
Q ss_pred hcCCCc
Q 001968 265 SKRMDP 270 (989)
Q Consensus 265 ~~~~~~ 270 (989)
+++...
T Consensus 218 s~pi~~ 223 (265)
T 3b2a_A 218 SFPLLE 223 (265)
T ss_dssp TSCCCS
T ss_pred cCcccH
Confidence 986553
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=66.20 E-value=12 Score=39.85 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHHhCC
Q 001968 417 YRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTK 496 (989)
Q Consensus 417 ~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll~~~ 496 (989)
.|+-++-.+..++.. ++.++ .+.+.+..-+++ .+.-.+=.|+..++.+ ..+ +.++.+...+-+
T Consensus 84 lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~---~N~~iR~lALRtL~~I---~~~-------~m~~~l~~~lk~-- 146 (355)
T 3tjz_B 84 LRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTG---KEDSYRGPAVRALCQI---TDS-------TMLQAIERYMKQ-- 146 (355)
T ss_dssp HHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHS---SCHHHHHHHHHHHHHH---CCT-------TTHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCC---CcHhHHHHHHHHHhcC---CCH-------HHHHHHHHHHHH--
Confidence 344444344443333 34444 444555554443 3344444455444444 332 234444433331
Q ss_pred CCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHH
Q 001968 497 LPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 561 (989)
Q Consensus 497 ~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~ 561 (989)
.-.+.||+|+-.. +++-| +.+...|+.....++.+-+ .+.+.++.|..+|..++..+++.
T Consensus 147 ~L~d~~pyVRk~A--~l~~~-kL~~~~pe~v~~~~~~l~~--ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 147 AIVDKVPSVSSSA--LVSSL-HLLKCSFDVVKRWVNEAQE--AASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHTCSSHHHHHHH--HHHHH-HHTTTCHHHHHTTHHHHHH--HTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHH--HHHHH-HHhccCHHHHHHHHHHHHH--HhcCCCccHHHHHHHHHHHHHhh
Confidence 1236889995333 23333 5556667766666666665 66778889999888888888764
No 82
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=63.51 E-value=2.4e+02 Score=33.50 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=33.9
Q ss_pred hHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHH---HhhhcchhhHHHHHHHhHhhhh
Q 001968 527 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK---LLKAKLVPFIENILQSLQDTIA 582 (989)
Q Consensus 527 L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~---~~~~~l~p~~~~il~~l~~~l~ 582 (989)
...+++.++- |+.+.+..+...+..++..+|- .|++.+.|. +++.+++.+.
T Consensus 337 V~~l~p~~~~--g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~---vL~r~y~sLe 390 (799)
T 1vsy_4 337 VEIFLNIISL--GSQNKNPDIANYYISCFAYLLELDPSNAYLIYDK---ILIDLYDTLA 390 (799)
T ss_dssp HHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHH---HHHHHHHHHT
T ss_pred HHHHHHHHHH--HhCcCCcchHHHHHHHHHHHHhcCCCccceehHH---HHHHHHHHhc
Confidence 3444444443 6666788899999999999999 444766554 4455555554
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=62.44 E-value=1.4e+02 Score=32.91 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHhhcccccc-c---cccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHh
Q 001968 205 SSDFEVCTGVLDCMRRYISWI-D---INLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 205 ~~~~~l~~~~L~~l~~~i~wi-~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~ 265 (989)
+.++++...+..+|... +|- + ...+.+...++.+.++|.. ..+++++..|+.+|..+..
T Consensus 254 s~~~~v~~~A~~aL~nL-s~~~~~~~k~~I~~~GaI~~LV~lLl~-s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNL-SWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp CSCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHTTHHHHHHHHHTT-CCSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-hcCCCHHHHHHHHHcCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHcc
Confidence 56788888888887663 442 1 1234556778888887653 2467899999999988876
No 84
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=62.27 E-value=1.9e+02 Score=32.01 Aligned_cols=204 Identities=13% Similarity=0.063 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHHHhcC----------CchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH---
Q 001968 18 IDSMLKSQAVNFCQQIKET----------PSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRE--- 84 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~----------~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~--- 84 (989)
.+++.+..|-..|..+-.. ..+......+|.+ .+++++..++..|.+... -+++.+..+.+
T Consensus 113 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~-----~~~~~~~~i~~~~~ 186 (529)
T 1jdh_A 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY-----GNQESKLIILASGG 186 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHCCC
Confidence 3788889998888877443 3355566666654 457788887777764432 23444444332
Q ss_pred --HHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHhhcCCc-hhHHHHHHHHH
Q 001968 85 --SVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIW-----SSVFVDFLPQLNKGS-MVIDMFCRVLN 156 (989)
Q Consensus 85 --~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~W-----p~~~~~l~~~~~~~~-~~~~~~L~iL~ 156 (989)
.++..+... .+..++...+.++..+.. .|..- ...++-++..+..+. ......+.+|.
T Consensus 187 i~~L~~ll~~~------------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 187 PQALVNIMRTY------------TYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp HHHHHHHHHHC------------CCHHHHHHHHHHHHHHTT--STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC------------ChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 333333321 345566666666666642 22211 134566666665543 34455566666
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccc--cccccccc
Q 001968 157 SLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID--INLIANDA 234 (989)
Q Consensus 157 ~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~--~~~~~~~~ 234 (989)
.++...... . .... .++.++ .+|. ..++++...+..++......-+ ...+.+..
T Consensus 253 ~l~~~~~~~------~----------~~~~-~i~~L~----~ll~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 308 (529)
T 1jdh_A 253 NLSDAATKQ------E----------GMEG-LLGTLV----QLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308 (529)
T ss_dssp HHHTTCTTC------S----------CCHH-HHHHHH----HHTT---CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHhcCChhh------H----------HHHh-HHHHHH----HHHc---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 665432110 0 0011 134333 3333 4677888888888876644311 22233456
Q ss_pred cHHHHHHHHHhcCCChhHHhHHHHHHHHHHh
Q 001968 235 FIPLLFELILADGLPEQFRGAAVGCVLAVVS 265 (989)
Q Consensus 235 ~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~ 265 (989)
.++.+.+.+.....+++++..|+.+|..+..
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 7788888886433457899999999998854
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=57.51 E-value=2.2e+02 Score=31.15 Aligned_cols=154 Identities=8% Similarity=0.113 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcc--------cc--cCchHHHHHHHHccCChhHHHHHHHHHHHHHH
Q 001968 690 QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGA--------SV--FPYLPKALEQLLAESEPKEMAGFLVLLNQLIC 759 (989)
Q Consensus 690 ~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~--------~~--~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~ 759 (989)
.+++.+..++.. ..++.+++.++.++..++..-++ .+ ...+|.++. ++.+-+..-.....++++.+..
T Consensus 283 ~~l~~L~~lL~~-~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~-LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 283 DAIRTYLNLMGK-SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHH-HTTCSCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHhh-cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHH-HHhCCCHhHHHHHHHHHHHHhc
Confidence 455566666654 34578999999999888653322 11 356777776 4444343333456666766654
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cCCCCcCChHHH
Q 001968 760 KFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVF-LSPKSRGYLDPI 838 (989)
Q Consensus 760 ~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~-~s~~~~~~~~~i 838 (989)
.......+.. ..+.....+|.... +. -...+++.......+..++.++....- +.+ .+ .
T Consensus 361 --~~~~~~~i~~---~~i~~Lv~lL~~~~----~~-----~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~--~g----~ 420 (457)
T 1xm9_A 361 --HPLLHRVMGN---QVFPEVTRLLTSHT----GN-----TSNSEDILSSACYTVRNLMASQPQLAKQYFS--SS----M 420 (457)
T ss_dssp --SGGGHHHHHH---HTHHHHHHTTTSCC----SC-----STTHHHHHHHHHHHHHHHHTTCTHHHHHHCC--HH----H
T ss_pred --CHHHHHHHHH---hhhHHHHHhccCCC----CC-----CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH--cC----C
Confidence 2233332221 23334455665421 00 012456777778888888876533221 111 12 3
Q ss_pred HHHHHHhhcCCC-ChhhhhHHHHHHHHHH
Q 001968 839 MQLLLYTSCNHK-DYLVRKACVQIFIRLI 866 (989)
Q Consensus 839 l~~l~~~~~~~~-~~~~~k~a~~~l~~~i 866 (989)
+..+.... .+. ...+.|.|..++..+.
T Consensus 421 l~~L~~L~-~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 421 LNNIINLC-RSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHH-HCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHHHHHH
Confidence 33333322 566 7889999999887654
No 86
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=55.97 E-value=2.3e+02 Score=30.95 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=76.7
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc-CCchH---------HHHHHHhccCCchHHHHHHHHHHHHHHhhhcC
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKE-TPSIC---------RICIEKLSLCNIVQVQFWCLQTLSEVVRVKYT 72 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~-~~~~w---------~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~ 72 (989)
.+...|..+.++ |++.+..|-..|..+-. ++..+ .....+|. +.++.+++-|+..|++....
T Consensus 3 ~l~~lv~~L~s~----~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~--- 74 (457)
T 1xm9_A 3 TIPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFR--- 74 (457)
T ss_dssp CHHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSS---
T ss_pred CHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC---
Confidence 356677777765 77888899988888754 34444 44455665 45689999999999987652
Q ss_pred CCCHHHHHHHHH-HHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCCh----hhHHHHHHhh
Q 001968 73 SMSSEERNLIRE-SVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWS----SVFVDFLPQL 141 (989)
Q Consensus 73 ~l~~~~~~~lr~-~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp----~~~~~l~~~~ 141 (989)
+++.|..+.+ ..+..+.+... ..+..-++...+.+|..|... ++.-. ..++-++..+
T Consensus 75 --~~~~k~~i~~~G~i~~Lv~lL~--------~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 75 --STTNKLETRRQNGIREAVSLLR--------RTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRV 136 (457)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHT--------TCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHcCCHHHHHHHHh--------hCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHH
Confidence 4566666633 33444444321 023567888889999988754 33211 4566666666
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=55.45 E-value=1.7e+02 Score=29.31 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=96.2
Q ss_pred CCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHH
Q 001968 543 PNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQS 622 (989)
Q Consensus 543 ~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~ 622 (989)
.+.+.+..|...+.....+....+...++-++..+.-.+.... ..-....+|.+..++....-..-.-.
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N-----------~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETN-----------PAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCC-----------HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHHHHHHhccccch
Confidence 3456677788888887777766666666666665532221111 11234456666666544210001122
Q ss_pred HH-HHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhc
Q 001968 623 DY-LSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVV 701 (989)
Q Consensus 623 ~~-l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 701 (989)
+| ...+++.++.++ + +..+ .....+..++..+..+. + ...+++.+...+.
T Consensus 127 ~~ea~~~lP~LveKl-------G---d~k~-~vR~~~r~il~~l~~v~---~--------------~~~v~~~l~~g~k- 177 (266)
T 2of3_A 127 QEEVSAFVPYLLLKT-------G---EAKD-NMRTSVRDIVNVLSDVV---G--------------PLKMTPMLLDALK- 177 (266)
T ss_dssp HHHHHHHHHHHHHGG-------G---CSSH-HHHHHHHHHHHHHHHHH---C--------------HHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHHHh-------C---CChH-HHHHHHHHHHHHHHHHC---C--------------HHHHHHHHHHHHc-
Confidence 23 233444443332 1 1111 11122334444444432 1 1234444555443
Q ss_pred CCCChhHhHHHHHHHHHHHhhhcccccCch---HHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001968 702 FPKVEPLRCKVTSFIHRMVDTLGASVFPYL---PKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILD 770 (989)
Q Consensus 702 ~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l---~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~ 770 (989)
.++...|+.++..+..++...|.....++ |.+.. ++.+-+..-=...+.++..+....|+.+..+++
T Consensus 178 -sKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~-ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 178 -SKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAP-FVGDKDVNVRNAAINVLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGG-GGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred -cCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHH-HHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 45689999999999999999997644455 55554 334433322145566666666666766554443
No 88
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=49.25 E-value=79 Score=28.64 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=72.3
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCH--HH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSS--EE 78 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~--~~ 78 (989)
+.+.|.-+-+|+ .....-....+++..+...+.+-..+...|.. +.++.+..+|+.+|+..+++.-..+-. ..
T Consensus 12 ~~~~IekATs~~--l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias 89 (149)
T 3g2s_A 12 LEARINRATNPL--NKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK 89 (149)
T ss_dssp HHHHHHHHSCTT--CSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS
T ss_pred HHHHHHHHcCCC--CCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 677888888875 23345667888999999988877777766643 567999999999999999975332211 11
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCC
Q 001968 79 RNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPL 128 (989)
Q Consensus 79 ~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~ 128 (989)
+..+ +.|...+...|. +...+.-|++|+..++-.-. ..||.
T Consensus 90 ~~Fl-~eL~kl~~~k~~-------~~~~~~~Vk~kil~li~~W~-~~f~~ 130 (149)
T 3g2s_A 90 FRFL-NELIKVVSPKYL-------GSRTSEKVKNKILELLYSWT-VGLPE 130 (149)
T ss_dssp HHHH-HHHHHHHCTTTT-------GGGSCHHHHHHHHHHHHHHH-HHCTT
T ss_pred HHHH-HHHHHHHccccc-------CCCCCHHHHHHHHHHHHHHH-HHhCC
Confidence 1111 223322221100 01246789999988887763 35654
No 89
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=48.48 E-value=72 Score=29.41 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=47.1
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhh
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVK 70 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~ 70 (989)
+.+.|..+-+++ .....-....+.+..+..++.+-..|...|.. ++++++++.|+.+|+..+++.
T Consensus 16 ~~~~IekATs~~--~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNc 83 (163)
T 1x5b_A 16 FEQDVEKATNEY--NTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANC 83 (163)
T ss_dssp THHHHHHHTCTT--CSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCC--CCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 456677777764 22334555677888888888777777666642 467899999999999999974
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=46.68 E-value=63 Score=31.75 Aligned_cols=144 Identities=12% Similarity=0.122 Sum_probs=83.5
Q ss_pred HHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch-hhHHHHHHHhHhhhhccccCCcccccCCCCcchh--HHHHHH
Q 001968 531 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGS--HIFEAI 607 (989)
Q Consensus 531 l~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~--~l~eai 607 (989)
+..++. .+++.++.++.+|-.++..+.+.....+. .-++.+++.+..++.. .+++. +..+++
T Consensus 35 l~~L~~--LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-------------~dEkval~A~r~L 99 (265)
T 3b2a_A 35 LFLILE--LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-------------ENEKVTIKALRAL 99 (265)
T ss_dssp HHHHHH--HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-------------TTHHHHHHHHHHH
T ss_pred HHHHHH--HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-------------cchhHHHHHHHHH
Confidence 334444 66778899999999999999999766553 4566666666555421 24554 558899
Q ss_pred HHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHH
Q 001968 608 GLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLM 687 (989)
Q Consensus 608 ~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~ 687 (989)
++++...+++++.-...... +...+... + .+.. ..+...+|.+ +... .
T Consensus 100 ~~LLe~vpL~~~~y~Kl~~a--------L~dlik~~-------~--~il~-~eaae~Lgkl-kv~~-------------~ 147 (265)
T 3b2a_A 100 GYLVKDVPMGSKTFLKAAKT--------LVSLLESP-------D--DMMR-IETIDVLSKL-QPLE-------------D 147 (265)
T ss_dssp HHHHTTCCBCHHHHHHHHHH--------HHHHTTSC-------C--HHHH-HHHHHHHHHC-CBSC-------------C
T ss_pred HHHHcCCCCCHHHHHHHHHH--------HHHHhcCC-------C--chHH-HHHHHHhCcC-Cccc-------------c
Confidence 99999976554433333222 22332210 1 1111 1223444444 2111 1
Q ss_pred HHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhh
Q 001968 688 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL 723 (989)
Q Consensus 688 ~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l 723 (989)
...+...+.+++. ..+..+..+..+++..+...-
T Consensus 148 ~~~V~~~l~sLl~--Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 148 SKLVRTYINELVV--SPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp CHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHh--CCChhHHHHHHHHHHHhhccc
Confidence 2456667777773 567778877777777665443
No 91
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.47 E-value=1e+02 Score=30.15 Aligned_cols=104 Identities=11% Similarity=0.195 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCH--H
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSS--E 77 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~--~ 77 (989)
.+++.|.-+-+|+ .....-....+....+.+++++-..+...|.. +.+++++..|+.+|+..+++.-..+-. .
T Consensus 8 ~~~~~i~kAT~~~--~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eia 85 (226)
T 3zyq_A 8 TFERLLDKATSQL--LLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVA 85 (226)
T ss_dssp HHHHHHHHHTCTT--CSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHS
T ss_pred hHHHHHHHHcCCC--CCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhc
Confidence 4678888888875 22334566677788888777755666655543 567999999999999999874322111 1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHH
Q 001968 78 ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTL 121 (989)
Q Consensus 78 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l 121 (989)
.+..+ +.|...+.. ..+.-|++|+..++..-
T Consensus 86 s~~fl-~~l~~l~~~------------~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 86 NKQTM-EELKDLLKR------------QVEVNVRNKILYLIQAW 116 (226)
T ss_dssp SHHHH-HHHHHHHHH------------CCCHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHhcc------------CCCHHHHHHHHHHHHHH
Confidence 12222 223333322 24567888887777655
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=46.33 E-value=3.1e+02 Score=30.90 Aligned_cols=145 Identities=11% Similarity=0.066 Sum_probs=81.9
Q ss_pred HHHHHHHhccCCch--HHHHHHHHHHHHHHhhhc------CCCCHHHHHHHHHHHHHHHH-hhhhcCCCcccCCCChHHH
Q 001968 40 CRICIEKLSLCNIV--QVQFWCLQTLSEVVRVKY------TSMSSEERNLIRESVFSMVC-CELVDGKSSMRVLESPAFI 110 (989)
Q Consensus 40 w~~~~~lL~~~~~~--~vr~fa~~~L~~~I~~~w------~~l~~~~~~~lr~~ll~~l~-~~~~~~~~~~~~~~~~~~v 110 (989)
|++|..++..--++ ++|+=||.-||+.++.+- ...+. --.+| ++-.+. .-+.+ -.....-..|
T Consensus 173 fqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvR--LLCVLALDRFGD----YVSDqVVAPV 244 (800)
T 3oc3_A 173 LDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSK--IYEILVTDKFND----FVDDRTVAPV 244 (800)
T ss_dssp GGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHH--HHHHHHHBCCBB----CSSSSCBCHH
T ss_pred HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHH--HHHHHHhccccc----cccCeeeeeh
Confidence 45666655543333 899999999999998763 22333 11222 222221 11111 1112456789
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHH
Q 001968 111 RNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCV 189 (989)
Q Consensus 111 ~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~ 189 (989)
|...||+++.+ ...|+. -..+..++....... .++-..|-.|+.+ .|+ -. ..
T Consensus 245 RETaAQtLGaL--~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL-----L~------------------~L 297 (800)
T 3oc3_A 245 RDAAAYLLSRI--YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEF-----VE------------------DK 297 (800)
T ss_dssp HHHHHHHHHHH--TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG-----CC------------------CH
T ss_pred HHHHHHHHHHH--HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHH-----HH------------------HH
Confidence 99999999998 456666 345555554333332 4555666666766 222 10 03
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHhhccc
Q 001968 190 EQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYI 222 (989)
Q Consensus 190 ~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i 222 (989)
+.++..+...|. +.+.+++..+-.++.-.+
T Consensus 298 d~Vv~aVL~GL~---D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 298 DGLCRKLVSLLS---SPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHHHTT---CSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhcC---CcccHHHHHHHHHhhhhc
Confidence 444544444444 567788887777776544
No 93
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=43.42 E-value=95 Score=28.39 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc----CCchHHHHHHHHHHHHHHhhh
Q 001968 3 DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL----CNIVQVQFWCLQTLSEVVRVK 70 (989)
Q Consensus 3 ~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~----~~~~~vr~fa~~~L~~~I~~~ 70 (989)
.+.+.|..+-+++ .....-....+.+..+..++.+-..|...|.. ..+++++.+|+.+|+..+++.
T Consensus 16 ~~~~~IekATs~~--l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNc 85 (157)
T 1elk_A 16 PVGQRIEKATDGS--LQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNC 85 (157)
T ss_dssp HHHHHHHHHTCTT--CSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC--CCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 3667777787764 22334556677888888887777766666643 467899999999999999975
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=41.24 E-value=22 Score=37.72 Aligned_cols=72 Identities=8% Similarity=-0.005 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHh
Q 001968 500 HSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD 579 (989)
Q Consensus 500 ~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 579 (989)
+++|.++...+.++++. ..|+.++.+.+.+-. ++.+.+|-||..|+.+..+++...++.+.. +++.+.+
T Consensus 115 ~~N~~iR~lALRtL~~I-----~~~~m~~~l~~~lk~--~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~----~~~~l~~ 183 (355)
T 3tjz_B 115 GKEDSYRGPAVRALCQI-----TDSTMLQAIERYMKQ--AIVDKVPSVSSSALVSSLHLLKCSFDVVKR----WVNEAQE 183 (355)
T ss_dssp SSCHHHHHHHHHHHHHH-----CCTTTHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHTTTCHHHHHT----THHHHHH
T ss_pred CCcHhHHHHHHHHHhcC-----CCHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHH
Confidence 57788754443345543 357888888888887 888999999999999999988776654433 3444555
Q ss_pred hhh
Q 001968 580 TIA 582 (989)
Q Consensus 580 ~l~ 582 (989)
++.
T Consensus 184 ll~ 186 (355)
T 3tjz_B 184 AAS 186 (355)
T ss_dssp HTT
T ss_pred Hhc
Confidence 553
No 95
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=39.72 E-value=5.4e+02 Score=30.46 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhCh---HHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHHHH
Q 001968 419 KDLLVLLRSVGRVAP---EVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLL 493 (989)
Q Consensus 419 ~~l~~~l~~i~~i~~---~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~ll 493 (989)
......++..+.+.| +.+++.+.+.+-.++++.=-....+.-+++.++..++..+-.... -..++..++..++
T Consensus 357 ~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~--yr~hl~~lL~l~L 432 (799)
T 1vsy_4 357 NYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKL--YRVHITNVLSMLV 432 (799)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTT--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHh
Confidence 345677888899888 999999888887776540025567888888877777655433210 1235555555544
No 96
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=37.79 E-value=1.2e+02 Score=27.03 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=48.2
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhh
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVK 70 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~ 70 (989)
+.+.|.-+-+++ .....-....+.+..+..++.+-.-|...+.. ++++.++..|+.+|+..+++.
T Consensus 6 ~d~~iekAT~~~--l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc 73 (140)
T 3ldz_A 6 FDQDVEKATSEM--NTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNC 73 (140)
T ss_dssp THHHHHHHTCTT--SSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC--CCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc
Confidence 456677777764 23345667788888999888877777766432 467899999999999999874
No 97
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=37.37 E-value=2.3e+02 Score=25.47 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=69.1
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVKYTSMSSEERN 80 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~ 80 (989)
+.+.|..+-+++ .....-....+.+..+...+.+-..|...+.. +.++.+..+|+.+|+..+++.-..+ +.
T Consensus 2 ~~~~iekATs~~--l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~f----h~ 75 (148)
T 1mhq_A 2 LELWLNKATDPS--MSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKF----HS 75 (148)
T ss_dssp HHHHHHHHHCTT--CSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH----HH
T ss_pred HHHHHHHHcCCC--CCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH----HH
Confidence 456677777764 22334566778888888888777777666643 5779999999999999999743222 11
Q ss_pred HH-HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcC
Q 001968 81 LI-RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYP 127 (989)
Q Consensus 81 ~l-r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p 127 (989)
++ ....++-+.+.+. +...+...+.-|+.|+..++-.- ...|+
T Consensus 76 evas~~Fl~eL~kl~~---~k~~~~~~~~~Vk~kil~li~~W-~~~f~ 119 (148)
T 1mhq_A 76 EVAKFRFLNELIKVLS---PKYLGSWATGKVKGRVIEILFSW-TVWFP 119 (148)
T ss_dssp HHTSHHHHHHHHHTTC---CSTTSCCCCHHHHHHHHHHHHHH-HHHCT
T ss_pred HHhhHHHHHHHHHHHc---cccCCCCCCHHHHHHHHHHHHHH-HHHcC
Confidence 11 2223333443311 00001134678999988777665 33454
No 98
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=34.67 E-value=4.9e+02 Score=28.50 Aligned_cols=235 Identities=15% Similarity=0.225 Sum_probs=116.7
Q ss_pred HHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccC
Q 001968 663 MAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 742 (989)
Q Consensus 663 ~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~ 742 (989)
..|.+..|.|+. .-.+++..++.+++ ..+..||-.+..-+-.++. . .+++.++..|.+-.
T Consensus 50 Q~I~kffk~FP~------------l~~~Ai~a~lDLcE--Ded~~IR~qaik~Lp~~ck---~---~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 50 QFIPKFFKHFPE------------LADSAINAQLDLCE--DEDVSIRRQAIKELPQFAT---G---ENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGGCGG------------GHHHHHHHHHHHHT--CSSHHHHHHHHHHGGGGCC---T---TCHHHHHHHHHHHT
T ss_pred HHHHHHHhhChh------------hHHHHHHHHHHHHh--cccHHHHHHHHHhhHHHhh---h---hhhhhHHHHHHHHH
Confidence 455666666653 24567777777776 4566777644444433332 2 56777777776655
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001968 743 EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDL 822 (989)
Q Consensus 743 ~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~ 822 (989)
.+.+-.++-.+=..++.-++.+....+..+|..+. . . | .-+|+..+.|+..-+..-.
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~----~---~-----------~-----e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL----Q---G-----------E-----DIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----H---S-----------C-----HHHHHHHHHHHHHHGGGSC
T ss_pred hccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc----c---c-----------c-----hHHHHHHHHHHHHHHhhcc
Confidence 54443444445555666677776555544444332 1 1 0 2467778999987776655
Q ss_pred CccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCC
Q 001968 823 SSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDK 902 (989)
Q Consensus 823 ~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (989)
..++ +.. .+..+...+.-+. .|. ...-+..+-+++....-- ...+|.+ -+++-+.. ++-+..
T Consensus 167 ~~~l-~~E----~E~~i~~~ikK~L--~DV--T~~EF~L~m~lL~~lkl~----~t~~g~q-eLv~ii~e----Qa~L~~ 228 (507)
T 3u0r_A 167 DEVL-TKE----VEELILTESKKVL--EDV--TGEEFVLFMKILSGLKSL----QTVSGRQ-QLVELVAE----QADLEQ 228 (507)
T ss_dssp TTTS-CHH----HHHHHHHHHHHHT--TSC--CHHHHHHHHHHHHTSGGG----SSHHHHH-HHHHHHHH----HHTTTS
T ss_pred hhhc-cHH----HHHHHHHHHHHHh--ccc--cHHHHHHHHHHHHhcccc----cCchHHH-HHHHHHHH----HHhccC
Confidence 5554 221 2222222111111 121 122344455555444321 1123322 22222111 112224
Q ss_pred CCCcccchhhHhHHHHHHHHHHHHH-----HHhHHHHHHHHHhcCCCC-CCCH-----HHHHHHHHHhcc
Q 001968 903 SFEFGDANTLVLFGEIVLAQKVMYE-----KFGNDFLVHFVTKGFPSA-HCPP-----DLAEQYCQKLQG 961 (989)
Q Consensus 903 ~f~~~d~~~~~~~~ei~~~l~~~~~-----~~~~~~l~~~~~~~~P~~-~~~~-----~~~~~f~~~l~~ 961 (989)
.|+..|..+ ++.+..+++.-.. ..+..|++++....||.. .++. +.+.++++.+..
T Consensus 229 ~f~~sD~e~---vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE 295 (507)
T 3u0r_A 229 TFNPSDPDC---VDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAE 295 (507)
T ss_dssp CCCSSCHHH---HHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHH
T ss_pred CCCCcCHHH---HHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHH
Confidence 566666543 2333332221111 124579988888899964 3333 256677777633
No 99
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.98 E-value=3.2e+02 Score=25.56 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhhcC
Q 001968 18 IDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDG 97 (989)
Q Consensus 18 ~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~~~ 97 (989)
.++..|..|-..|.++. .+++.......|.. .++.+|..|+..|...= +++. ...|...+.
T Consensus 62 ~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~-------~~~~----~~~L~~~l~------ 122 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIG-DERAVEPLIKALKD-EDGWVRQSAAVALGQIG-------DERA----VEPLIKALK------ 122 (211)
T ss_dssp SCHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC-------CGGG----HHHHHHHTT------
T ss_pred CCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC-------cHHH----HHHHHHHHh------
Confidence 38999999999999886 46778888888854 56899999999987541 1122 223333221
Q ss_pred CCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhccCCCChhHHHH
Q 001968 98 KSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGS-MVIDMFCRVLNSLDDELISLDYPRTADELTV 176 (989)
Q Consensus 98 ~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Eev~~~~~~~~~~~~~r 176 (989)
.....||...+.+++.+. .+..++.+...++... .+.......|..+.
T Consensus 123 -------d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------------- 171 (211)
T 3ltm_A 123 -------DEDWFVRIAAAFALGEIG-------DERAVEPLIKALKDEDGWVRQSAADALGEIG----------------- 171 (211)
T ss_dssp -------CSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------------
T ss_pred -------CCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------------
Confidence 246789999999988872 2566777777775433 33333344333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccc
Q 001968 177 AARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYI 222 (989)
Q Consensus 177 ~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i 222 (989)
-+.+...+...+. +.++.+...+.++|..+-
T Consensus 172 ------------~~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 172 ------------GERVRAAMEKLAE---TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp ------------SHHHHHHHHHHHH---HCCHHHHHHHHHHHHC--
T ss_pred ------------chhHHHHHHHHHh---CCCHHHHHHHHHHHHhcC
Confidence 1223333334444 457788888888887653
No 100
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=31.83 E-value=74 Score=28.83 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc
Q 001968 513 VTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 566 (989)
Q Consensus 513 lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l 566 (989)
+-..++.+...+.--..++..|-. -+.+++|.++..|..++..+++.|+..+
T Consensus 32 ileicD~I~~~~~~pk~a~ral~k--rl~~~n~~v~l~AL~LLe~cvkNCG~~f 83 (149)
T 3g2s_A 32 INGFCEQLNEDFEGPPLATRLLAH--KIQSPQEWEAIQALTVLETCMKSCGKRF 83 (149)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHCCCCcHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 444456666655544555555554 5556899999999999999999999765
No 101
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=30.65 E-value=76 Score=29.55 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=36.4
Q ss_pred hhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 515 RYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 515 ~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
..++.+...+.--..++..|-. -+.+.++.++..|-.++-.+++.|+..+.
T Consensus 36 eicD~I~~~~~~~k~A~ral~k--rl~~~n~~vql~AL~LLd~~vkNCG~~Fh 86 (171)
T 1juq_A 36 GFCDQINKELEGPQIAVRLLAH--KIQSPQEWEALQALTVLEACMKNCGRRFH 86 (171)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4445555555444555565554 55668899999999999999999987653
No 102
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.42 E-value=1.4e+02 Score=28.92 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhh
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVK 70 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~ 70 (989)
+.+.|..+-+++ ...+.-....+....+...+++-..+...|.. ++++.++.+|+.+|+..+++-
T Consensus 6 ~~~~ie~AT~~~--~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 6 FCKNLENATSHL--RLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHHCTT--CSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC--CCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 567777777664 12233445667777888777766666655542 467899999999999999874
No 103
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=30.24 E-value=1.3e+02 Score=27.65 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=35.4
Q ss_pred hhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc
Q 001968 515 RYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 566 (989)
Q Consensus 515 ~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l 566 (989)
..++.+...+.--..++..|-. -+.+.++.++.+|-.++..+++.|...+
T Consensus 38 eicD~I~~~~~~~keA~ral~k--rl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 38 DICDKVGSTPNGAKDCLKAIMK--RVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555555545555555554 4556789999999999999999998755
No 104
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=29.61 E-value=40 Score=21.47 Aligned_cols=18 Identities=6% Similarity=0.074 Sum_probs=15.5
Q ss_pred cCCCCCCCHHHHHHHHHHhc
Q 001968 941 GFPSAHCPPDLAEQYCQKLQ 960 (989)
Q Consensus 941 ~~P~~~~~~~~~~~f~~~l~ 960 (989)
-.| +++.+|++.|+++|-
T Consensus 14 h~~--nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 14 HDP--NLNEEQRNAKIKSIR 31 (34)
T ss_dssp HCT--TCCHHHHHHHHHHHH
T ss_pred cCC--CCCHHHHHhHHHHHh
Confidence 567 899999999999874
No 105
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=29.41 E-value=6.6e+02 Score=28.39 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=61.9
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc-CC---------chHHHHHHHhccCCchHHHHHHHHHHHHHHhhhcCC
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKE-TP---------SICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTS 73 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~-~~---------~~w~~~~~lL~~~~~~~vr~fa~~~L~~~I~~~w~~ 73 (989)
+...|..+.++ +++.+.+|-..|..+-. ++ .+......+|.+ .++.++..|+..|.+....
T Consensus 50 i~~LV~~L~s~----~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~---- 120 (584)
T 3l6x_A 50 LPEVIAMLGFR----LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFG---- 120 (584)
T ss_dssp HHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSS----
T ss_pred HHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHcc----
Confidence 56666666654 78888888888877654 22 244555666654 5689999999999887431
Q ss_pred CCHHHHHHHHH-HHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHH
Q 001968 74 MSSEERNLIRE-SVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIY 123 (989)
Q Consensus 74 l~~~~~~~lr~-~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~ 123 (989)
-+++.|..|.+ ..+..+...... ..+..++...+.+|..+..
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s--------~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRK--------ARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHH--------CCSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhC
Confidence 02455555543 223333332110 1244567777777777654
No 106
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=28.52 E-value=1.3e+02 Score=27.89 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=46.9
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhh
Q 001968 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSL---CNIVQVQFWCLQTLSEVVRVK 70 (989)
Q Consensus 4 l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~---~~~~~vr~fa~~~L~~~I~~~ 70 (989)
+.+.|..+-+++ .....-....+.+..+..++.+-..|...|.. +.++.++.+|+.+|+..+++.
T Consensus 14 ~~~~IekATs~~--l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC 81 (171)
T 1juq_A 14 LESWLNKATNPS--NRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC 81 (171)
T ss_dssp HHHHHHHHTCTT--CSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC--CCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 667777777764 22334455678888888887766666665542 467899999999999999874
No 107
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=27.58 E-value=1e+02 Score=27.57 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=33.6
Q ss_pred hHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 516 YMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 516 y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
.++.+...+.--..++..+-. .+.+.++.++.+|..++..+++.|+..+.
T Consensus 29 icD~I~~~~~~~k~a~rai~K--rl~~~n~~~ql~AL~LLe~~vkNcG~~f~ 78 (140)
T 3ldz_A 29 ICDKVGQSRTGPKDCLRSIMR--RVNHKDPHVAMQALTLLGACVSNCGKIFH 78 (140)
T ss_dssp HHHHHTTSTTHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHCCCcCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 344455444444445555443 45567889999999999999999987553
No 108
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=26.76 E-value=88 Score=28.29 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=34.9
Q ss_pred hhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcch
Q 001968 515 RYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 567 (989)
Q Consensus 515 ~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~ 567 (989)
..++.+...+.--..++..|-. -+.++++.++.+|-.++-.+++.|+..+.
T Consensus 24 eicD~I~~~~~~~k~a~rai~k--rl~~~n~~vql~AL~LLe~~vkNCG~~fh 74 (148)
T 1mhq_A 24 NFCEQVNTDPNGPTHAPWLLAH--KIQSPQEKEALYALTVLEMCMNHCGEKFH 74 (148)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3444554444333444454444 45568899999999999999999997663
No 109
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=26.46 E-value=5.5e+02 Score=26.44 Aligned_cols=125 Identities=13% Similarity=0.234 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHh-hcCCCChhHhHHHHHHHHHHHhhhcccccCchHHH----HHHHHccCC--hhHHH-HHHHHHH
Q 001968 684 IGLMFKQTLDVLLQIL-VVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKA----LEQLLAESE--PKEMA-GFLVLLN 755 (989)
Q Consensus 684 ~~~~~~~~~~~~~~~l-~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l----~~~ll~~~~--~~~~~-~~L~l~~ 755 (989)
+..++..+.+..+... +.|.+.++.|..-..+++.+....-+.+..+-|+. ++.++=.+. .++.. .-|.++-
T Consensus 113 vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~ 192 (321)
T 1w9c_A 113 IPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILF 192 (321)
T ss_dssp HHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 3345555554444444 35678899999988888888765544443333443 333333342 12222 3355555
Q ss_pred HHHHHhhh--h-hHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 001968 756 QLICKFNT--L-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLH 815 (989)
Q Consensus 756 ~li~~~~~--~-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~ 815 (989)
.++..+.+ + ..++..+-+-.+++.++.++.... ...++..+..+-...|.++.
T Consensus 193 ~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~-------Hk~gF~~q~~iL~~lf~~ve 248 (321)
T 1w9c_A 193 TLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS-------HTAGLTMHASILAYMFNLVE 248 (321)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS-------CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch-------hhccHHHHHHHHHHHHHHHH
Confidence 55555542 2 345566667788888888886532 22356777777666666554
No 110
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.08 E-value=3.2e+02 Score=26.58 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=34.5
Q ss_pred HhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcc
Q 001968 517 MKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 566 (989)
Q Consensus 517 ~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l 566 (989)
++.+...+.--..++..|-. -+.++++.++.+|..++..+++.|+..+
T Consensus 33 cD~I~~~~~~~k~a~ral~k--rl~~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 33 CDLIRQGDTQAKYAVNSIKK--KVNDKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHTTSSCHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhCCCccHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHhcchHH
Confidence 34444444444555665554 5556889999999999999999999755
No 111
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=25.88 E-value=5.9e+02 Score=26.60 Aligned_cols=257 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhc----------cCCchHHHHHHHHHHHHHHhhhc
Q 001968 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLS----------LCNIVQVQFWCLQTLSEVVRVKY 71 (989)
Q Consensus 2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~----------~~~~~~vr~fa~~~L~~~I~~~w 71 (989)
+++.+|+.++.+=+ .|++.|+..-+ -.+-+....+|. .+.++.+|+.|+.+|.+.
T Consensus 47 ~~~~~A~~aL~nls--~d~e~R~~i~~--------~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nL----- 111 (354)
T 3nmw_A 47 HQICPAVCVLMKLS--FDEEHRHAMNE--------LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL----- 111 (354)
T ss_dssp GTHHHHHHHHHHHH--TSHHHHHHHHH--------TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHH--------cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHH-----
Q ss_pred CCCCHHHHHHH--HHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhh-----HHHHHHhh--c
Q 001968 72 TSMSSEERNLI--RESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSV-----FVDFLPQL--N 142 (989)
Q Consensus 72 ~~l~~~~~~~l--r~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~-----~~~l~~~~--~ 142 (989)
..-+++.|..+ ....+..+.+. ...+..-++...+.+|..|....-+..-..+ ++-|+..+ .
T Consensus 112 a~~~~~~k~~i~~~~GaIp~LV~L---------L~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~ 182 (354)
T 3nmw_A 112 TFGDVANKATLCSMKGCMRALVAQ---------LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182 (354)
T ss_dssp TSSCHHHHHHHHHCHHHHHHHHHG---------GGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHcCCcHHHHHHH---------HCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC
Q ss_pred CCchhHHHHHHHHHHHHH---HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCH---HHHHHHHH
Q 001968 143 KGSMVIDMFCRVLNSLDD---ELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDF---EVCTGVLD 216 (989)
Q Consensus 143 ~~~~~~~~~L~iL~~l~E---ev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~---~l~~~~L~ 216 (989)
.++...+..+..|..|+- +. |..+.. ....+..+..+|.. ..+. ++.+.+..
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~n------------------k~~i~~--~~Gai~~Lv~lL~~--~~~~~~~~v~~~A~~ 240 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTEN------------------KADICA--VDGALAFLVGTLTY--RSQTNTLAIIESGGG 240 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHH------------------HHHHHH--STTHHHHHHHHTTC--CCSSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccChhh------------------hHHHHH--hcCcHHHHHHHhcc--CCCcccHHHHHHHHH
Q ss_pred Hhhccc-----cccccccccccccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccC
Q 001968 217 CMRRYI-----SWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSE 291 (989)
Q Consensus 217 ~l~~~i-----~wi~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~ 291 (989)
+|.+.- .--....+.+...++.+.++|. ..+.+++..|+.+|..+.... .+..+.+...+..+.+-.+..
T Consensus 241 aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~~---~~~~~~i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTIVSNACGTLWNLSARN---PKDQEALWDMGAVSMLKNLIH 315 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSC---HHHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCChHHHHHHHHHHHHHhCCC---HHHHHHHHHCCCHHHHHHHHh
Q ss_pred CcchHHHHHHHHHHHHHH
Q 001968 292 DGESELVSKVAALLTGYA 309 (989)
Q Consensus 292 ~~d~~~~~~~~~l~~~~~ 309 (989)
..+....+..+..+..+.
T Consensus 316 s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 316 SKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
No 112
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=21.01 E-value=43 Score=21.89 Aligned_cols=18 Identities=6% Similarity=0.074 Sum_probs=15.4
Q ss_pred cCCCCCCCHHHHHHHHHHhc
Q 001968 941 GFPSAHCPPDLAEQYCQKLQ 960 (989)
Q Consensus 941 ~~P~~~~~~~~~~~f~~~l~ 960 (989)
-+| +++.+|++.|+++|-
T Consensus 19 h~~--nLtEeQrn~yI~slk 36 (38)
T 1zda_A 19 HDP--NLNEEQRNAKIKSIR 36 (38)
T ss_dssp SCS--SSCTTHHHHHHHHHS
T ss_pred cCC--CCCHHHHHhHHHHhh
Confidence 567 889999999999874
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=20.08 E-value=2.7e+02 Score=27.71 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHH
Q 001968 483 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVV 559 (989)
Q Consensus 483 ~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~ 559 (989)
..++++++.++. +..+++..++-. +++=+.+-+..++++++.+++.+.. .+.++++.|..+|..+...+-
T Consensus 49 ~ll~~~l~~il~--~~~~~~~~vrk~---~~~Fi~e~~~~k~~l~~~~l~~L~~--Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 49 ELAEEFLESVLS--LAHDSNMEVRKQ---VVAFVEQVCKVKVELLPHVINVVSM--LLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp GGHHHHHHHHHG--GGGCSCHHHHHH---HHHHHHHHHHHCGGGHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hccCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHH
Confidence 477777777773 333344444332 3444445557789999999998886 667777777777665554433
Done!