Query 001969
Match_columns 989
No_of_seqs 278 out of 552
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 8.4E-29 2.9E-33 236.5 14.2 112 126-237 8-121 (130)
2 4i1k_A B3 domain-containing tr 99.8 7.1E-19 2.4E-23 171.6 12.0 99 127-235 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 1E-15 3.6E-20 140.3 10.6 95 129-234 8-102 (104)
4 1na6_A Ecorii, restriction end 94.6 0.062 2.1E-06 60.4 8.1 93 128-221 17-123 (404)
5 3iot_A Maltose-binding protein 83.7 0.27 9.2E-06 53.7 0.8 7 200-206 128-134 (449)
6 3cgm_A SLYD, peptidyl-prolyl C 76.1 4.8 0.00016 39.7 6.7 100 210-326 3-110 (158)
7 2k8i_A SLYD, peptidyl-prolyl C 72.1 6.8 0.00023 39.1 6.8 102 210-326 3-114 (171)
8 2kfw_A FKBP-type peptidyl-prol 69.8 3.3 0.00011 42.3 4.0 102 210-326 3-114 (196)
9 2kr7_A FKBP-type peptidyl-prol 65.2 18 0.00061 35.1 7.9 105 207-326 4-119 (151)
10 4dt4_A FKBP-type 16 kDa peptid 63.2 10 0.00036 37.9 6.0 105 209-326 24-138 (169)
11 3p8d_A Medulloblastoma antigen 51.7 16 0.00056 31.9 4.5 54 295-366 5-58 (67)
12 3qii_A PHD finger protein 20; 49.7 17 0.00057 33.3 4.4 54 295-366 20-73 (85)
13 3pr9_A FKBP-type peptidyl-prol 46.8 74 0.0025 31.3 8.9 62 254-326 56-123 (157)
14 1mhn_A SurviVal motor neuron p 46.6 18 0.00063 29.9 3.9 29 295-326 2-30 (59)
15 4a4f_A SurviVal of motor neuro 45.5 19 0.00066 30.3 4.0 55 295-364 7-61 (64)
16 3s6w_A Tudor domain-containing 43.1 19 0.00066 29.1 3.5 28 296-326 1-28 (54)
17 2equ_A PHD finger protein 20-l 42.9 21 0.0007 31.6 3.8 39 295-347 8-46 (74)
18 1g5v_A SurviVal motor neuron p 38.6 26 0.0009 31.8 3.9 55 295-364 9-63 (88)
19 3o27_A Putative uncharacterize 37.3 26 0.00087 30.9 3.4 34 202-235 31-65 (68)
20 2jng_A Cullin-7, CUL-7; P53 bi 36.8 28 0.00097 32.9 3.9 69 284-366 10-78 (105)
21 3m7a_A Uncharacterized protein 29.1 42 0.0014 32.8 3.9 46 170-218 84-140 (140)
22 2e63_A KIAA1787 protein; struc 28.6 34 0.0012 34.2 3.3 24 208-231 116-139 (170)
23 3pnw_C Tudor domain-containing 28.0 49 0.0017 29.1 3.8 29 295-326 16-44 (77)
24 2k75_A Uncharacterized protein 26.6 1.1E+02 0.0036 28.1 5.9 46 169-234 39-88 (106)
25 3e0e_A Replication protein A; 25.1 1.7E+02 0.0058 26.2 6.9 72 128-231 13-88 (97)
26 1o7i_A SSB, SSO2364, single st 23.7 2.2E+02 0.0075 26.2 7.6 72 128-233 14-90 (119)
27 1ix5_A FKBP; ppiase, isomerase 23.6 94 0.0032 30.1 5.2 61 255-326 58-124 (151)
28 2cbp_A Cucumber basic protein; 22.7 38 0.0013 30.8 2.1 19 204-222 18-36 (96)
29 2kbn_A Conserved protein; nucl 22.5 2.4E+02 0.0081 25.8 7.5 70 127-234 16-89 (109)
30 3lnn_A Membrane fusion protein 22.1 5.9E+02 0.02 26.7 11.5 65 36-105 198-264 (359)
31 3prb_A FKBP-type peptidyl-prol 22.0 2.1E+02 0.0073 29.9 7.9 61 255-326 57-123 (231)
32 2yue_A Protein neuralized; str 20.9 67 0.0023 32.1 3.7 20 211-230 107-126 (168)
33 3dm3_A Replication factor A; p 20.4 2.5E+02 0.0084 25.7 7.1 36 169-221 42-77 (105)
34 1whl_A Cylindromatosis tumor s 20.2 2E+02 0.0068 26.3 6.3 49 295-348 6-54 (95)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=8.4e-29 Score=236.48 Aligned_cols=112 Identities=32% Similarity=0.520 Sum_probs=103.9
Q ss_pred CCcceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhh
Q 001969 126 KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFV 205 (989)
Q Consensus 126 ~~~~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FV 205 (989)
++..++|+|+||+|||+++++|+||+++|++|||.++.+...++++|.++|.+|++|+|||+||+++++|+|++||+.||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 46778999999999999999999999999999999987666778999999999999999999999899999999999999
Q ss_pred ccCCCCCCCeEEEEEcc--CccEEEEEEecCCCC
Q 001969 206 SGKRLFAGDSVLFIRDE--KQQLLLGIRRANRQP 237 (989)
Q Consensus 206 r~KkL~aGDsVVF~R~e--~GeL~VGIRRA~r~~ 237 (989)
++|+|++||+|+|+|.+ ++.|+|++||+.+..
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999986 467999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.78 E-value=7.1e-19 Score=171.55 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=87.9
Q ss_pred CcceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhc
Q 001969 127 PQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVS 206 (989)
Q Consensus 127 ~~~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr 206 (989)
...++|+|+||+||+.++++|.||++++++|||..+ .++.++|. |+.|+|+|+|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 456799999999999987889999999999999754 37888888 6999999999974 7999999999999
Q ss_pred cCCCCCCCeEEEEEccCc--cEEEEEEecCC
Q 001969 207 GKRLFAGDSVLFIRDEKQ--QLLLGIRRANR 235 (989)
Q Consensus 207 ~KkL~aGDsVVF~R~e~G--eL~VGIRRA~r 235 (989)
+++|++||+|+|...++. .|.|.|.|++.
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999998755 69999999875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.62 E-value=1e-15 Score=140.26 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=83.3
Q ss_pred ceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhccC
Q 001969 129 TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGK 208 (989)
Q Consensus 129 ~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr~K 208 (989)
.+.|.|+|+++|. ..+|.||+++++++.+.+. .++.++|..|++|+++|.+++ ++++|++||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 3589999999994 4599999999998665443 378999999999999999874 4789999999999999
Q ss_pred CCCCCCeEEEEEccCccEEEEEEecC
Q 001969 209 RLFAGDSVLFIRDEKQQLLLGIRRAN 234 (989)
Q Consensus 209 kL~aGDsVVF~R~e~GeL~VGIRRA~ 234 (989)
+|++||.|+|...++..+.|.|.|.+
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECCC
Confidence 99999999999999999999999863
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.64 E-value=0.062 Score=60.36 Aligned_cols=93 Identities=23% Similarity=0.264 Sum_probs=68.3
Q ss_pred cceEEEEEeccccCCCC----CceeeecchhhhcCCCCCCC-CCCCceEEEE--EecCCCeEEEEEEEeC------CCCc
Q 001969 128 QTEFFCKTLTASDTSTH----GGFSVPRRAAEKIFPPLDFS-MQPPAQELMA--RDLHDNIWTFRHIYRG------QPKR 194 (989)
Q Consensus 128 ~~~~F~KtLT~SDVs~~----GrfsVPkr~AE~~FPpLd~s-~~~psq~Lvv--~Dl~Gk~W~FR~iyrg------~prR 194 (989)
....|+|.|++-|++.. .+|.+|+..++.+||.|+.. ...+...+.+ .|...-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 45789999999999886 47999998899999988833 3345555543 3444455699999996 4556
Q ss_pred eeecccch-hhhccCCCCCCCeEEEEEc
Q 001969 195 HLLTTGWS-LFVSGKRLFAGDSVLFIRD 221 (989)
Q Consensus 195 hlLTTGWs-~FVr~KkL~aGDsVVF~R~ 221 (989)
|.||. |. .+.-.+...+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 78862 33 3455578889999999864
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=83.72 E-value=0.27 Score=53.69 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=3.6
Q ss_pred cchhhhc
Q 001969 200 GWSLFVS 206 (989)
Q Consensus 200 GWs~FVr 206 (989)
-|.+|+.
T Consensus 128 Twdel~~ 134 (449)
T 3iot_A 128 TWEEIPA 134 (449)
T ss_dssp BGGGHHH
T ss_pred CHHHHHH
Confidence 4555544
No 6
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=76.06 E-value=4.8 Score=39.66 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCCCCeEEEE-Ec-cCccEEEEEEecCCCCCCCCCCcCCCCccccchHHHHHHHHhcCCcEEEEEcCCCCC------Ccc
Q 001969 210 LFAGDSVLFI-RD-EKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASP------SEF 281 (989)
Q Consensus 210 L~aGDsVVF~-R~-e~GeL~VGIRRA~r~~~~~~ssv~ss~sm~~gvlaaAa~aaatgs~FtV~Y~PRas~------sEF 281 (989)
.+.||.|.+. +. .+|+.+-.-+ .. -.+....+ +--+.+|......|..++|..-|.... .-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--------~~-f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--------LS-YLHGHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--------EE-EETTSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--------EE-EEECCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888773 22 5676554332 00 01111222 222556666667788888887664432 347
Q ss_pred eeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 282 VVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 282 VVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
.|+++.|.+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 8888887532 47999999985 45553 567899999975
No 7
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=72.12 E-value=6.8 Score=39.08 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCCCCeEEEE-E--ccCccEEEEEEecCCCCCCCCCCc-CCCCccccchHHHHHHHHhcCCcEEEEEcCCCCC------C
Q 001969 210 LFAGDSVLFI-R--DEKQQLLLGIRRANRQPANLSSSV-LSSDSMHIGILAAAAHAAANNSPFTVFYNPRASP------S 279 (989)
Q Consensus 210 L~aGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv-~ss~sm~~gvlaaAa~aaatgs~FtV~Y~PRas~------s 279 (989)
.+.||.|++. + ..+|+.+-.-+.. .|..+ +....+- --+.+|..-...|..++|..-|-... .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vi-pG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLI-SGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSC-SHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcc-hHHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 5678888773 3 2477655433211 12122 1122222 23556766677788888887665433 3
Q ss_pred cceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 280 EFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 280 EFVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
-+.||++.|... ..+.+||+|.+ ++++. . +.|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 358898887532 46999999984 55553 3 6899999974
No 8
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=69.84 E-value=3.3 Score=42.34 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=61.3
Q ss_pred CCCCCeEEEE-E--ccCccEEEEEEecCCCCCCCCCCcC-CCCccccchHHHHHHHHhcCCcEEEEEcCCCC------CC
Q 001969 210 LFAGDSVLFI-R--DEKQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRAS------PS 279 (989)
Q Consensus 210 L~aGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv~-ss~sm~~gvlaaAa~aaatgs~FtV~Y~PRas------~s 279 (989)
.+.||+|++. + .++|+++-.-+.. .|..++ ....+ +--+.+|..-...|..++|+.-|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 5688998873 3 3577654433211 122221 22222 22355566666678888888766432 24
Q ss_pred cceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 280 EFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 280 EFVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
=+.||++.|... ..+.+||+|. +++++. .+.|+|+.|.+
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~--~~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFL--AETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEE--EEETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCCc---cCcccCCEEE--EECCCC---cEEEEEEEEcC
Confidence 478888887421 3689999996 455553 57899999975
No 9
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=65.17 E-value=18 Score=35.14 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=63.3
Q ss_pred cCCCCCCCeEEEE-E--cc-CccEEEEEEecCCCCCCCCCCcC-CCCccccchHHHHHHHHhcCCcEEEEEcCCCC----
Q 001969 207 GKRLFAGDSVLFI-R--DE-KQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRAS---- 277 (989)
Q Consensus 207 ~KkL~aGDsVVF~-R--~e-~GeL~VGIRRA~r~~~~~~ssv~-ss~sm~~gvlaaAa~aaatgs~FtV~Y~PRas---- 277 (989)
.+..+.||.|.+. . .. +|+.+-.-+. + .|..+. ....+ +--+.+|..-...|..++|..-|...
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~--~----~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS--K----EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT--T----CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC--C----cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 3457789998874 3 23 6765443321 0 121221 12222 22255566666778888887655432
Q ss_pred --CCcceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 278 --PSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 278 --~sEFVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
-.-+.||++.| ....+.+||+|.+ ++++. .++.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f----~~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF----EGIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG----TTSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc----CCCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 24478888888 1257999999985 45553 567899999975
No 10
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=63.23 E-value=10 Score=37.87 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCCCCeEEEE-E--ccCccEEEEEEecCCCCCCCCCCcC-CCCccccchHHHHHHHHhcCCcEEEEEcCCCCCCc----
Q 001969 209 RLFAGDSVLFI-R--DEKQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSE---- 280 (989)
Q Consensus 209 kL~aGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv~-ss~sm~~gvlaaAa~aaatgs~FtV~Y~PRas~sE---- 280 (989)
..+.||.|.+. + .++|+++-.-+...+ |..++ ....+ +--+.+|......|..++|..-|.....+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~-----P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGK-----PALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTS-----CEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCC-----CEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 57889999884 3 357776543221111 11211 11122 22356677777788889998777654433
Q ss_pred --ceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 281 --FVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 281 --FVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
+.||++.|... ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 67888887643 35889999875 45553 467899999985
No 11
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=51.68 E-value=16 Score=31.90 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCcceeeeccccCCCCCCCCccccCcccccCC
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA 366 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~WR~LqV~WDE~~~~~~~~RVSPWEIEpv~~ 366 (989)
..|.+|+++..++ + | .++|-|+|++|... ....|.+++.. .+.|..=+|.|+..
T Consensus 5 ~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 5 SEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 58 (67)
T ss_dssp CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCCc
Confidence 5799999999999 3 3 38999999999752 45899999843 36666666665543
No 12
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=49.69 E-value=17 Score=33.30 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=40.4
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCcceeeeccccCCCCCCCCccccCcccccCC
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA 366 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~WR~LqV~WDE~~~~~~~~RVSPWEIEpv~~ 366 (989)
..|.+|+++-..+ + | .+||-++|++|... ..+.|.++++. .+.|..=+|.|+..
T Consensus 20 ~~f~vGd~VlArW-~-D--~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 6899999999999 3 3 38999999999852 35899999843 35666666666653
No 13
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=46.76 E-value=74 Score=31.28 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=44.5
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCc------ceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 254 ILAAAAHAAANNSPFTVFYNPRASPSE------FVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 254 vlaaAa~aaatgs~FtV~Y~PRas~sE------FVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
-+.+|......|..++|+--|-....+ +.||++.|.+. . ....+||+|.+ +++ .|+|+.|.+
T Consensus 56 G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~-~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 56 GLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-G-IKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-T-CCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-c-CCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 367788888899999998665443322 67899888764 2 45788999975 321 589999975
No 14
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=46.63 E-value=18 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
..|.+|+.+...|. +|. .||.++|+++..
T Consensus 2 ~~~~~G~~c~A~~s-~Dg--~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWS-EDG--CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECT-TTS--CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEEC-CCC--CEEEEEEEEEcC
Confidence 47999999999994 342 899999999964
No 15
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=45.45 E-value=19 Score=30.31 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=36.1
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCcceeeeccccCCCCCCCCccccCccccc
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPV 364 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~WR~LqV~WDE~~~~~~~~RVSPWEIEpv 364 (989)
..|.+|+.+...|. +|. .||.++|.+|.... ....|...+-. +.+.|..=+|.|+
T Consensus 7 ~~~~vGd~c~A~~s-~Dg--~wYrA~I~~v~~~~---------~~~~V~fvdYG---n~e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWS-EDG--QCYEAEIEEIDEEN---------GTAAITFAGYG---NAEVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECT-TTS--SEEEEEEEEEETTT---------TEEEEEETTTT---EEEEEEGGGEECC
T ss_pred CCCCCCCEEEEEEC-CCC--CEEEEEEEEEcCCC---------CEEEEEEEecC---CEEEEeHHHcEeC
Confidence 57999999999994 342 89999999997421 23567766543 2344444344433
No 16
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=43.06 E-value=19 Score=29.11 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=22.3
Q ss_pred CCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 296 QISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 296 ~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
.|.+|+.+...|..|. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4999999999994333 899999999963
No 17
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.90 E-value=21 Score=31.56 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCcceeeeccccC
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDES 347 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~WR~LqV~WDE~ 347 (989)
..|.+|+++...|. | ..||.++|++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws--D--g~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT--D--CRYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS--S--SSEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC--C--CCEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 4 2899999999963 1 3468888765
No 18
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=38.58 E-value=26 Score=31.77 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=36.0
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCcceeeeccccCCCCCCCCccccCccccc
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPV 364 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~WR~LqV~WDE~~~~~~~~RVSPWEIEpv 364 (989)
..|.+|+.+...|. +|. .||.++|.+|... + ..+.|...+=+ +.+.|..=+|.|+
T Consensus 9 ~~~kvGd~C~A~ys-~Dg--~wYrA~I~~i~~~------~---~~~~V~fiDYG---N~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 9 QQWKVGDKCSAIWS-EDG--CIYPATIASIDFK------R---ETCVVVYTGYG---NREEQNLSDLLSP 63 (88)
T ss_dssp CCCCSSCEEEEECT-TTC--CEEEEEEEEEETT------T---TEEEEEETTTC---CEEEEEGGGCBCC
T ss_pred CCCCCCCEEEEEEC-CCC--CEEEEEEEEecCC------C---CEEEEEEecCC---CEEEEcHHHcccC
Confidence 57999999999994 442 8999999999742 1 23466665433 2344544444443
No 19
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=37.35 E-value=26 Score=30.93 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=29.9
Q ss_pred hhhhccCCCCCCCeEEEEEc-cCccEEEEEEecCC
Q 001969 202 SLFVSGKRLFAGDSVLFIRD-EKQQLLLGIRRANR 235 (989)
Q Consensus 202 s~FVr~KkL~aGDsVVF~R~-e~GeL~VGIRRA~r 235 (989)
.++++.-+++.||.+...-+ .+|++.+..+|.++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 48999999999999999875 58889999999765
No 20
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=36.81 E-value=28 Score=32.91 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=44.3
Q ss_pred ehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCcceeeeccccCCCCCCCCccccCcccc
Q 001969 284 PLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEP 363 (989)
Q Consensus 284 p~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~WR~LqV~WDE~~~~~~~~RVSPWEIEp 363 (989)
..+.|-.-+. .+..+|||+||.=.-||-+. -=.|++. ++ .+- -+ .++|.|.... +.-.|+-=.||.
T Consensus 10 s~~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~G-----l~--~vQv~W~~~G---~TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NNG-----VP--PVQVFWESTG---RTYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CTT-----SS--EEEEEETTTT---EEEEEEGGGEEE
T ss_pred cchhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ec-CCC-----Cc--cceeeehhcC---ceEEEEeehhhh
Confidence 3467888887 88999999999733233221 2368877 43 222 22 8999998665 235566666777
Q ss_pred cCC
Q 001969 364 VTA 366 (989)
Q Consensus 364 v~~ 366 (989)
+..
T Consensus 76 lg~ 78 (105)
T 2jng_A 76 LGF 78 (105)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 21
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=29.14 E-value=42 Score=32.84 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=32.1
Q ss_pred eEEEEEecCCCeEEEEEEEe---------CCCCceee--cccchhhhccCCCCCCCeEEE
Q 001969 170 QELMARDLHDNIWTFRHIYR---------GQPKRHLL--TTGWSLFVSGKRLFAGDSVLF 218 (989)
Q Consensus 170 q~Lvv~Dl~Gk~W~FR~iyr---------g~prRhlL--TTGWs~FVr~KkL~aGDsVVF 218 (989)
.++++.|..|++=.....-. ..+-+|+| ..||. .++++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 46788888887766643211 12346888 57776 7889999999975
No 22
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.63 E-value=34 Score=34.25 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCCCCCCeEEEEEccCccEEEEEE
Q 001969 208 KRLFAGDSVLFIRDEKQQLLLGIR 231 (989)
Q Consensus 208 KkL~aGDsVVF~R~e~GeL~VGIR 231 (989)
..|.+||.|-|+++++|+|++.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 457899999999999999999873
No 23
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=27.96 E-value=49 Score=29.08 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
..|.+|+.+...|..|. .||.++|++|..
T Consensus 16 ~~~kvGd~C~A~ys~Dg---~wYRA~I~~i~~ 44 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDN---KFYRAEVEALHS 44 (77)
T ss_dssp TTCCTTCEEEEEETTTT---EEEEEEEEEECT
T ss_pred CCCCcCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 47999999999994333 899999999964
No 24
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=26.58 E-value=1.1e+02 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.056 Sum_probs=34.4
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhccCCCCCCCeEEEEEc----cCccEEEEEEecC
Q 001969 169 AQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRD----EKQQLLLGIRRAN 234 (989)
Q Consensus 169 sq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr~KkL~aGDsVVF~R~----e~GeL~VGIRRA~ 234 (989)
..++.+.|..| ..+++.|+.. |++||+|.+... -+|.+.|.|-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 34789999999 5888888632 889999999743 3777777776543
No 25
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=25.09 E-value=1.7e+02 Score=26.21 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred cceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhcc
Q 001969 128 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSG 207 (989)
Q Consensus 128 ~~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr~ 207 (989)
...+..|+++..++.. |-.-+.+ ...-..+.+.|..| ..+.+.| .+.+..
T Consensus 13 ~v~i~~~V~~~~~~r~--------------~~~~~G~-~~~v~~~~l~DeTG---~I~~tlW------------~~~~~~ 62 (97)
T 3e0e_A 13 SGTINAEVVTAYPKKE--------------FSRKDGT-KGQLKSLFLKDDTG---SIRGTLW------------NELADF 62 (97)
T ss_dssp EEEEEEEEEEECCCEE--------------EC----C-CEEEEEEEEEETTE---EEEEEEE------------GGGGGC
T ss_pred cEEEEEEEEECCCceE--------------EEcCCCC-eeEEEEEEEECCCC---cEEEEEE------------CCcccc
Confidence 4557778887776543 1111111 01234688899888 5666555 444444
Q ss_pred CCCCCCCeEEEEEc----cCccEEEEEE
Q 001969 208 KRLFAGDSVLFIRD----EKQQLLLGIR 231 (989)
Q Consensus 208 KkL~aGDsVVF~R~----e~GeL~VGIR 231 (989)
.|++||.|.| +. ..|.+.+.+-
T Consensus 63 -~i~~Gdvv~i-~g~v~~~~~~~el~~g 88 (97)
T 3e0e_A 63 -EVKKGDIAEV-SGYVKQGYSGLEISVD 88 (97)
T ss_dssp -CCCTTCEEEE-EEEEEEC--CEEEEEE
T ss_pred -ccCCCCEEEE-EEEEEEcCCeEEEEEC
Confidence 8999999999 53 2444444443
No 26
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=23.74 E-value=2.2e+02 Score=26.17 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=46.0
Q ss_pred cceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCC-CceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhc
Q 001969 128 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVS 206 (989)
Q Consensus 128 ~~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~-psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr 206 (989)
.+..+.++++.+++.. +-++ + +. +...+.+.|..|. .++.+|+. .+
T Consensus 14 ~v~~~~~V~~~~~~~~-----~~~k---------~---G~~~~~~~~l~D~TG~---I~~tlW~~------------~~- 60 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQ-----IQTK---------N---GVRTISEAIVGDETGR---VKLTLWGK------------HA- 60 (119)
T ss_dssp SEEEEEEEEEECCCEE-----ECCT---------T---CCEEEEEEEEEETTEE---EEEEEEGG------------GT-
T ss_pred cEEEEEEEEECCCCee-----EEec---------C---CCEEEEEEEEEeCCCE---EEEEEECC------------hh-
Confidence 4567778888876532 0000 1 22 4568899999994 67777752 22
Q ss_pred cCCCCCCCeEEEEEc----cCccEEEEEEec
Q 001969 207 GKRLFAGDSVLFIRD----EKQQLLLGIRRA 233 (989)
Q Consensus 207 ~KkL~aGDsVVF~R~----e~GeL~VGIRRA 233 (989)
..+.+||+|.+... -+|.+.+.|.|.
T Consensus 61 -~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~ 90 (119)
T 1o7i_A 61 -GSIKEGQVVKIENAWTTAFKGQVQLNAGSK 90 (119)
T ss_dssp -TCCCTTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred -hcCCCCCEEEEEeEEEEEeCCEEEEEECCC
Confidence 24789999988743 377777777654
No 27
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=23.59 E-value=94 Score=30.06 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCcEEEEEcCCC------CCCcceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 255 LAAAAHAAANNSPFTVFYNPRA------SPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 255 laaAa~aaatgs~FtV~Y~PRa------s~sEFVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
+.+|......|..++|.--|-. .-.-|.|++..|... . ..+.+||+|.+ ++ ..|+|+.|.+
T Consensus 58 ~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~~~v~~v~~~~f~~~-~-~~~~~G~~~~~--~~-------~~~~V~~v~~ 124 (151)
T 1ix5_A 58 FEEAVLDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEA-D-FEPEEGMVILA--EG-------IPATITEVTD 124 (151)
T ss_dssp HHHHHHTCCTTCCCEEEECTTTSSCSCCSTTBCCEETHHHHTS-T-TCCCTTEEEES--SS-------CEEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHHCCCCCccEEEEEEHHHcCcc-C-CcccccCEEEE--CC-------eEEEEEEEcC
Confidence 5667777778888888765533 335688999998541 1 46889998763 22 6899999975
No 28
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=22.69 E-value=38 Score=30.81 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=15.6
Q ss_pred hhccCCCCCCCeEEEEEcc
Q 001969 204 FVSGKRLFAGDSVLFIRDE 222 (989)
Q Consensus 204 FVr~KkL~aGDsVVF~R~e 222 (989)
-+..|+..+||+|+|.-..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 3678999999999997643
No 29
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=22.51 E-value=2.4e+02 Score=25.82 Aligned_cols=70 Identities=10% Similarity=0.101 Sum_probs=48.2
Q ss_pred CcceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhc
Q 001969 127 PQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVS 206 (989)
Q Consensus 127 ~~~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr 206 (989)
..+..+.|+++..+..+ +...+.+.+.|..| +.++++|+.. .
T Consensus 16 ~~v~v~~~V~~~~~~~~----------------------~~~~~~~~l~DeTG---~I~~t~W~~~-------------~ 57 (109)
T 2kbn_A 16 QWANLKAKVIQLWENTH----------------------ESISQVGLLGDETG---IIKFTIWKNA-------------E 57 (109)
T ss_dssp CEEEEEEEEEEEEECCC----------------------SSEEEEEEEECTTC---CEEEEEEGGG-------------C
T ss_pred CcEEEEEEEEEeEcCCC----------------------CeEEEEEEEECCCC---eEEEEEECcc-------------c
Confidence 35678889988876322 11245689999999 5788888521 2
Q ss_pred cCCCCCCCeEEEEE----ccCccEEEEEEecC
Q 001969 207 GKRLFAGDSVLFIR----DEKQQLLLGIRRAN 234 (989)
Q Consensus 207 ~KkL~aGDsVVF~R----~e~GeL~VGIRRA~ 234 (989)
...|++||+|.+.- .-+|.+.|.+-|..
T Consensus 58 ~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~ 89 (109)
T 2kbn_A 58 LPLLEQGESYLLRSVVVGEYNDRFQVQVNKNS 89 (109)
T ss_dssp CCCCCTTCEEEEEEEEEEEETTEEEEEECSSS
T ss_pred ccccCCCCEEEEEEEEEEEECCEEEEEECCce
Confidence 34788999999873 23788888776554
No 30
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=22.11 E-value=5.9e+02 Score=26.69 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=43.9
Q ss_pred CCcCCCCCCCe--EEEecCCchhhhhccccccccCCCCCCCCCCCcceEEEEEEeeccCCCCcceeeeeeee
Q 001969 36 PLVNLPAAGTH--VVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQ 105 (989)
Q Consensus 36 Plv~lP~vGs~--V~YFPQGH~Eq~~as~~~~~~~~~p~~~~lP~~i~C~V~~V~L~AD~~TDEVyAqitL~ 105 (989)
|++.|...+.. .+|+|...+..+.... .+...++.| ...+..+|..|.-.+|+.|.-+..++.+.
T Consensus 198 ~l~~i~~~~~l~v~~~v~e~~~~~i~~G~--~v~v~~~~~---~~~~~g~v~~i~~~~d~~~~~~~v~~~~~ 264 (359)
T 3lnn_A 198 SLMTVADLSHVFVTANAQEKDLGHVYVGQ--SATVKFDAY---DDPQPGKVRYVGQILDADTRTTKVRMVFD 264 (359)
T ss_dssp CSEEEECCSEEEEEEEECGGGSTTCCTTC--EEEEBCSSC---SSCEEEEEEECCCCCCTTSCCEEEEEEEE
T ss_pred ceEEEecCCeEEEEEEeCHHHHhhCCCCC--eEEEEEcCC---CCcEEEEEEEEecccCCCCcEEEEEEEec
Confidence 67777776653 4678887777665432 222234443 45678999999998998888777777664
No 31
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=21.98 E-value=2.1e+02 Score=29.89 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCc------ceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeec
Q 001969 255 LAAAAHAAANNSPFTVFYNPRASPSE------FVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 326 (989)
Q Consensus 255 laaAa~aaatgs~FtV~Y~PRas~sE------FVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d 326 (989)
+.+|......|..++|+--|-....+ +.||++.|... . ....+||+|.+ +++ .|+|+.|.+
T Consensus 57 ~eeaL~Gm~vGek~~v~Ippe~AYGe~~~~lv~~vp~~~f~~~-~-~~~~vG~~~~~--~~~-------~g~V~~v~~ 123 (231)
T 3prb_A 57 LDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-G-IKPIKGLTITI--DGI-------PGKIVSINS 123 (231)
T ss_dssp HHHHHHTCCTTCEEEEEECGGGTTCCCCGGGEEEEETHHHHTT-T-CCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEeCcHHhcCCCChHHEEecCHHHCCcc-c-CCCCCCcEEEe--cCC-------CEEEEEEcC
Confidence 66777778888889988766544333 67888887653 2 45788999964 331 589999985
No 32
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=20.92 E-value=67 Score=32.07 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=18.7
Q ss_pred CCCCeEEEEEccCccEEEEE
Q 001969 211 FAGDSVLFIRDEKQQLLLGI 230 (989)
Q Consensus 211 ~aGDsVVF~R~e~GeL~VGI 230 (989)
..||.+.|+++++|++++.|
T Consensus 107 ~~g~~l~f~v~~~G~l~~~i 126 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGI 126 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEE
T ss_pred cCCCEEEEEEcCCCEEEEEE
Confidence 67999999999999999988
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=20.42 E-value=2.5e+02 Score=25.74 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=26.0
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhccCCCCCCCeEEEEEc
Q 001969 169 AQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRD 221 (989)
Q Consensus 169 sq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr~KkL~aGDsVVF~R~ 221 (989)
..++.+.|..| .+|.+.|+. .+.. .|..||+|.| +.
T Consensus 42 v~~~~l~D~TG---~IrvtlW~~------------~a~~-~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 42 LKSFIVRDETG---SIRVTLWDN------------LTDI-DVGRGDYVRV-RG 77 (105)
T ss_dssp EEEEEEEETTE---EEEEEEEGG------------GGGS-CCCTTCEEEE-EE
T ss_pred EEEEEEECCCC---cEEEEEECc------------cccc-ccCCCCEEEE-EE
Confidence 34688899888 478877752 2222 7999999999 64
No 34
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.19 E-value=2e+02 Score=26.32 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=31.5
Q ss_pred CCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCcceeeeccccCC
Q 001969 295 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDEST 348 (989)
Q Consensus 295 ~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~WR~LqV~WDE~~ 348 (989)
..+.+|+|++...... + ....|||.-|...++.....-.| +=|+|||+.
T Consensus 6 ~~~~VG~rV~V~~~~~--~-~~~~GtVryvG~v~~~~~~~G~w--vGVElDep~ 54 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSG--E-EKFPGVVRFRGPLLAERTVSGIF--FGVELLEEG 54 (95)
T ss_dssp CCCCSSCEEEEECSSS--S-CEEEEEEEEECCCCSSSSCCCCC--EEEEECSSS
T ss_pred ccCcCCCEEEEecCCC--c-cceeEEEEEeCccCcccCCCceE--EEEEeCCCc
Confidence 4688999998864321 0 12568888777665322234456 679999995
Done!