BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001970
         (988 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UG0|A Chain A, Solution Structure Of Surp Domain In Bab30904
          Length = 88

 Score = 36.2 bits (82), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 403 LIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHD--YYARKLWEARQ 453
           +IE +A  VA  G   E ++ E  + NP F+FL   N  +  YY RK+ E R+
Sbjct: 30  VIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRK 82


>pdb|2DT6|A Chain A, Solution Structure Of The First Surp Domain Of Human
           Splicing Factor Sf3a120
          Length = 64

 Score = 33.9 bits (76), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 400 LKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNG-HDYYARKLWEARQ 453
           ++ +++  A+ VAR G  FE   R+   +NP F+FL   +  H YY  K+ E ++
Sbjct: 3   VRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKE 57


>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase
          Length = 694

 Score = 30.4 bits (67), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 783 EVPHESPPYPTSKAKNPAQKETSNA--NAGGNANIL 816
           E PH   PY  S+ +NP  + TS A  +AGG  N+L
Sbjct: 419 EAPHNVRPYSRSQLENPGVQVTSVAVESAGGQQNVL 454


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.130    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,799,732
Number of Sequences: 62578
Number of extensions: 1006144
Number of successful extensions: 1873
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1870
Number of HSP's gapped (non-prelim): 11
length of query: 988
length of database: 14,973,337
effective HSP length: 108
effective length of query: 880
effective length of database: 8,214,913
effective search space: 7229123440
effective search space used: 7229123440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)