Query 001970
Match_columns 988
No_of_seqs 165 out of 206
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 13:33:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2138 Predicted RNA binding 100.0 7E-155 2E-159 1308.2 21.6 844 3-988 2-868 (883)
2 PF07713 DUF1604: Protein of u 100.0 1.6E-48 3.5E-53 350.1 3.1 85 37-121 2-87 (87)
3 PF01805 Surp: Surp module; I 98.2 1.2E-06 2.6E-11 74.1 4.2 52 400-451 1-54 (55)
4 PF01585 G-patch: G-patch doma 98.0 3.6E-06 7.7E-11 68.9 1.8 21 160-180 2-22 (45)
5 smart00648 SWAP Suppressor-of- 97.8 2.9E-05 6.4E-10 65.4 4.3 50 402-451 2-52 (54)
6 smart00443 G_patch glycine ric 97.5 0.00011 2.4E-09 60.3 3.8 22 159-180 3-24 (47)
7 PF12656 G-patch_2: DExH-box s 96.8 0.0013 2.7E-08 60.0 4.1 21 160-180 30-50 (77)
8 KOG0965 Predicted RNA-binding 96.5 0.0012 2.7E-08 79.3 1.9 23 158-180 904-926 (988)
9 KOG2809 Telomerase elongation 94.7 0.025 5.3E-07 63.7 3.4 22 159-180 25-46 (326)
10 KOG1996 mRNA splicing factor [ 94.0 0.035 7.5E-07 61.6 2.7 28 153-180 203-232 (378)
11 KOG0151 Predicted splicing reg 91.8 0.15 3.2E-06 62.1 3.9 64 393-456 313-378 (877)
12 KOG2384 Major histocompatibili 91.6 0.055 1.2E-06 57.3 0.2 21 160-180 128-148 (223)
13 KOG4315 G-patch nucleic acid b 89.6 0.17 3.7E-06 58.6 1.7 22 159-180 153-174 (455)
14 KOG2985 Uncharacterized conser 89.1 0.41 8.8E-06 52.5 4.0 35 895-929 189-223 (306)
15 KOG1847 mRNA splicing factor [ 84.1 0.8 1.7E-05 55.6 3.2 50 396-445 184-234 (878)
16 KOG1847 mRNA splicing factor [ 81.0 0.73 1.6E-05 55.9 1.4 34 403-438 429-462 (878)
17 KOG2985 Uncharacterized conser 80.8 1.8 4E-05 47.6 4.2 10 978-987 248-257 (306)
18 KOG0835 Cyclin L [General func 77.8 1.3 2.9E-05 50.4 2.0 10 648-657 195-204 (367)
19 KOG2185 Predicted RNA-processi 73.0 1.8 3.9E-05 50.4 1.6 20 161-180 298-317 (486)
20 PF14127 DUF4294: Domain of un 71.0 0.82 1.8E-05 47.3 -1.5 17 58-74 114-130 (157)
21 KOG2184 Tuftelin-interacting p 61.7 4.3 9.4E-05 50.8 1.8 27 154-180 110-136 (767)
22 KOG4676 Splicing factor, argin 60.0 4.5 9.8E-05 47.1 1.5 8 978-985 385-392 (479)
23 KOG4676 Splicing factor, argin 59.0 5.9 0.00013 46.2 2.2 8 481-488 115-122 (479)
24 KOG3116 Predicted C3H1-type Zn 55.8 6.5 0.00014 40.6 1.6 20 897-916 114-133 (177)
25 KOG0151 Predicted splicing reg 55.8 9.2 0.0002 47.5 3.1 9 78-86 13-21 (877)
26 KOG0154 RNA-binding protein RB 52.1 5.9 0.00013 48.2 0.8 22 159-180 511-532 (573)
27 KOG2146 Splicing coactivator S 49.7 10 0.00023 42.7 2.1 19 890-908 296-314 (354)
28 KOG1994 Predicted RNA binding 47.9 7.9 0.00017 42.4 0.9 22 159-180 80-101 (268)
29 PF10500 SR-25: Nuclear RNA-sp 46.4 11 0.00023 41.2 1.5 9 907-915 48-56 (225)
30 PF15337 Vasculin: Vascular pr 41.5 14 0.0003 35.6 1.3 12 163-174 12-23 (97)
31 KOG0835 Cyclin L [General func 40.4 13 0.00028 42.8 1.1 47 908-954 303-349 (367)
32 KOG2888 Putative RNA binding p 35.5 18 0.00038 41.7 1.2 19 724-742 169-189 (453)
33 KOG3673 FtsJ-like RNA methyltr 33.6 25 0.00054 42.9 2.0 22 159-180 82-103 (845)
34 KOG2138 Predicted RNA binding 30.0 73 0.0016 40.1 5.1 28 226-253 222-252 (883)
35 KOG0147 Transcriptional coacti 30.0 28 0.00061 42.3 1.7 13 936-948 96-108 (549)
36 KOG4520 Predicted coiled-coil 26.2 37 0.00081 36.5 1.6 17 908-924 199-216 (238)
37 COG0339 Dcp Zn-dependent oligo 24.2 27 0.0006 43.6 0.3 17 54-70 601-617 (683)
38 KOG3794 CBF1-interacting corep 22.2 84 0.0018 37.2 3.5 26 632-662 118-145 (453)
39 KOG3869 Uncharacterized conser 20.2 64 0.0014 38.4 2.1 48 928-975 230-281 (450)
No 1
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=100.00 E-value=7.2e-155 Score=1308.24 Aligned_cols=844 Identities=30% Similarity=0.399 Sum_probs=613.4
Q ss_pred CCCCCceEecCCCCCchhHhhhhhhhhhhhcCCcccCCCCcccccccccccccccccccCccccccccccCCCCcccCcc
Q 001970 3 SDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTF 82 (988)
Q Consensus 3 ~dee~fv~yGTPL~p~de~~~rk~k~v~d~~g~~~~vPiwkQeVrDE~GRRRFHGAFTGGFSAGYfNTVGSKEGWtPstF 82 (988)
+++|+||+|||||++++++.++.+| +|+||+|+|+||+|||||||||||||||||||||||||||||+||
T Consensus 2 d~eedlv~yGtple~~ee~~sr~KK----------pvai~dQivtDEkGkRRFHGAFTGGfSAGywNTVGSkEGWtPQtF 71 (883)
T KOG2138|consen 2 DEEEDLVRYGTPLEALEEDVSRAKK----------PVAIEDQIVTDEKGKRRFHGAFTGGFSAGYWNTVGSKEGWTPQTF 71 (883)
T ss_pred cchhHHHHcCCCCCchhhccccccC----------cchhhhhhhhccccceeecccccCcccccceeccccccCcCcccc
Confidence 4688999999999998888888766 689999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHhhcCcccccCchhhhhcccccccccccccccCCchHHHHHHHHHHhhhcCCCCCCC-CCCCCcccCCCch
Q 001970 83 TSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQFDTFGSTAAEFARKQAEKEQQQRPSAIPG-PAPDELVVPATES 161 (988)
Q Consensus 83 ~SSR~~Ra~~~~QrpEDFMDEEDl~E~~~~~l~t~~~fd~fg~ta~e~ar~~~~~~~~~~~s~i~g-~i~~dLi~p~~es 161 (988)
+|||+|||..+.|+||||||||||+|||+. ++...+||+||+++.+..++ ....+..++++||| |||++||.|+.++
T Consensus 72 ~SSRqeRa~~~kq~~eDFMDeedlgefGia-~~ai~q~d~Fg~~a~q~~kr-k~~q~~~~tsaipg~pvledLv~Pvs~s 149 (883)
T KOG2138|consen 72 KSSRQERASSKKQLPEDFMDEEDLGEFGIA-PQAIRQTDEFGNEAEQKQKR-KLMQPELGTSAIPGLPVLEDLVRPVSDS 149 (883)
T ss_pred ccchhhhhhhhhcChhhhcchHHHHhhccC-chhhhhHHhhhhhhHHHHHH-HHhchhhcCCCCCCCccHHHHhhhhhhh
Confidence 999999999999999999999999999853 44456679999999876643 34445678899999 8999999999999
Q ss_pred HHHHHHHHhCcCCCCccchh-hHHHHH-HHHHhhhccCccchhcccCCCCCccccccccCCCccCC-CCCceecCCCCCC
Q 001970 162 IGVKLLLKMGWRRGRSIKDS-LYDARR-EGRKALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSR-CTPVYVLNPKQDL 238 (988)
Q Consensus 162 iGvkLLkkMGWreGQGIGp~-~~k~Rr-~ark~~l~l~~~~~~~~~~~se~~e~de~~~~~l~ap~-dtp~~~~~pK~d~ 238 (988)
|||+||++||||+||||||+ .++.+| ++|.. .........++.++++..+++|++ ++-++.|+||+|+
T Consensus 150 IgvrlLrsMGWr~GqgIgpr~~r~~krk~~r~~---------k~~s~~~fd~e~~dk~~pd~tfs~~dve~~~~tp~~~~ 220 (883)
T KOG2138|consen 150 IGVRLLRSMGWREGQGIGPRQTRKEKRKTARGS---------KKESKGEFDSENEDKDDPDITFSPDDVEPIFYTPKENR 220 (883)
T ss_pred HHHHHHHHhcCccCCCcCchhhcchhhccccCC---------cccccccccccccccCCccceeccccccceeccccccc
Confidence 99999999999999999992 233332 22210 000001112333444555666654 5555669999999
Q ss_pred cccccCCCCCchhhHHhhhccccCCCCCCCccccccc-ccccccCCCCCCCceeeeecCCCCCCCccccCCCCCcccccc
Q 001970 239 HGLGYDPYKNAPEFREKKRSRTSGHSKNGRTKALSIK-DSLFGLKSGKVAPGFGIGALEEYDAEDEDLYGADYEFVDTYA 317 (988)
Q Consensus 239 ~GLGY~p~~~a~ef~~~~~~~~s~~~~~~~~~~~~~~-~~l~~~k~g~~~~aFGVGALED~~~DDeDIY~~~~~~~~~~v 317 (988)
|||+|.|+...+.+.. .+.....-+. .+.++ .|+.||||||||||+ ||||||+ +|+++.+++
T Consensus 221 ~g~~y~gLnp~q~L~g-----------ssg~~~~pfkh~~ef~--kgi~gqaFGVGAfEE---EDEdVYA-~ydlsqydf 283 (883)
T KOG2138|consen 221 HGMSYSGLNPDQILSG-----------SSGSSAKPFKHGNEFG--KGIRGQAFGVGAFEE---EDEDVYA-RYDLSQYDF 283 (883)
T ss_pred ccccccccCcchhhcc-----------ccccccchhcccchhc--ccccccccccccccc---cccchhh-ccccchhee
Confidence 9999999876544321 1111111121 12232 388899999999997 9999999 899998888
Q ss_pred cccCCcCccccccccccccccCCCCCCCeeecccCCcccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 001970 318 EEDEEPSRLSKDVRKKLVGREQQDVLPGFILASKSDYQLERFDPPVVPKDFVPHHKFPGPLETDSKLAVPLPPEIPPPED 397 (988)
Q Consensus 318 ~~d~~~~~~~~~~k~~~~~~~~dg~L~GFvlA~~~~~~~k~f~PP~VP~df~P~h~f~~~~d~~~~~~~~~pp~~ppp~D 397 (988)
+.++++.+.+.. ...+.+ .+|+||.++.++++..+.|+||.||+||+|.|+|. |.|
T Consensus 284 sldd~~pk~se~----~~~k~~-kvldgFs~a~k~~~s~k~yapp~lPrdFr~~~rp~-------------------Pmd 339 (883)
T KOG2138|consen 284 SLDDKKPKQSEQ----QHVKQR-KVLDGFSLANKPLVSQKPYAPPILPRDFRPRHRPA-------------------PMD 339 (883)
T ss_pred ecccccchhhHH----Hhhhhh-ccccccccCCCccccccCCCCCCCCcccCCccCCC-------------------cch
Confidence 777776542211 112223 69999999999999999999999999999999863 233
Q ss_pred hhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCCCchhHHHHHHHHHHhhccccccccCCCCchhhccCChh
Q 001970 398 NNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETAQRLTAE 477 (988)
Q Consensus 398 ~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~g~~yy~rkl~e~~~k~~~~~~~~~~~~~~~~r~~L~A~ 477 (988)
.+ ++.+.+||++++++..++++-|+.|.|+.-|+ ++ |++++||+|+++..+..+..+..........+++
T Consensus 340 ~~--------~~~~s~~~kly~~~~~~khqlNa~qra~~lGe-~~-q~~~t~eeq~kr~~~k~~~k~~k~~~~~r~~~le 409 (883)
T KOG2138|consen 340 KE--------RAQKSETAKLYKRSGLGKHQLNADQRAQILGE-QQ-QEEKTAEEQPKRNPFKDHSKSMKQATDLRAAQLE 409 (883)
T ss_pred hh--------HhhhhhhcccccccccchhhcCHHHHHHhhcc-ch-hhhhhhhhhhhccchHhhhHHHHhhhhHHHHHHh
Confidence 22 45688999999999999999999999999988 77 9999999999999988877666666566666778
Q ss_pred hhhcccCCCCCCccccCCCcccCCccccccccccCCccccccccccCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCCCC
Q 001970 478 TRGKLLGERPLERSARDSSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPAKQERFERFLKEKYQGGLRSTD 557 (988)
Q Consensus 478 ~Rg~~LGE~pl~~~~~~~~~~~s~kd~~~~q~~l~~~~~k~~s~~~~~~~fkPF~~DpaKQ~RYe~fL~~~~~gg~~~~~ 557 (988)
.||.++|+.++..+....-...+.. ...+. -..+++...+.. ..+|+||++||+||.||++||..+++|+++.+.
T Consensus 410 ~rg~~~~~~~errsl~~~~a~e~~~--~~~er-~~~tat~~as~~--~~n~kpF~dDpaKQ~RyeeFl~~k~~g~k~~~~ 484 (883)
T KOG2138|consen 410 ARGLAQNAQSERRSLSPAAAAEACS--WNMER-GGGTATLKASAM--NSNFKPFADDPAKQKRYEEFLVHKKQGQKDALE 484 (883)
T ss_pred hccccccCchhhhhhhhhhHHhhhh--hhhhc-cCCccccchhhh--hhccCCCccCHHHHHHHHHHHHHHHhccccccc
Confidence 8999999998887643211110000 00000 112333333222 238999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhcccccccccccccCCccccccchHHhhhhccCCC--cc
Q 001970 558 SGGASAMSEAARARERLDFEAAAEAIEKAKQRKEGSISTEQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYP--RR 635 (988)
Q Consensus 558 ~~~~~~mSe~er~rE~~EF~~AA~ife~g~~yk~~k~~~~~~~~~~~~~~sRFTsa~~~~~~~~~~e~a~k~~MfG--tR 635 (988)
.|++++||+|+|++|+.||++||+|+.+++.|+..++.+.+...| ..--.|++++.++..+.. .|++|.||| ||
T Consensus 485 r~~~~smsewere~erdef~~aae~~~~~~~l~~~r~a~e~~ed~--a~~vq~e~gg~~~v~dk~--~av~~e~~~~~tR 560 (883)
T KOG2138|consen 485 RCLDPSMSEWERERERDEFARAAELYASSHSLLSSRFAHEKEEDD--ADQVQVERGGENDVGDKQ--SAVKMEMFGKLTR 560 (883)
T ss_pred ccCCcchhHHHHhhhhHHHHHHHHHHhhhhhhhhhhhcccccccc--ccceeeccCcccccCccc--chhhHhhcccccc
Confidence 999999999999999999999999987777776665543332222 111245555444444433 368899999 79
Q ss_pred cccccccCcccccccCCCCCCCCCCCCc-cccc-CCccccccccccccccchhhhhcccCCCCCCCCCCCCccchhhhhh
Q 001970 636 EEFQWRPSPILCKRFDLIDPYIGKPPPA-PRIK-SKMDSLIFISDSVKAPRLEESVAANNDRYSAPQSDAPEISRDVTKE 713 (988)
Q Consensus 636 e~~eW~P~~LLCKRFNVpdP~~G~~~~~-~~~~-sk~ds~~~ls~~v~~~~~~~~~~~~~~~~~~~q~~~~~~~~di~~~ 713 (988)
++|+|||+.|||||||||+||||+..++ |+.+ .||++|+||+++|.+...-. ++. ++ +..-.++-...
T Consensus 561 ~~f~W~Pd~LLcKRfnvpdPy~gs~l~~~prlkk~k~svfdfL~d~v~asa~~~-------~ps-s~--~vpek~e~~~s 630 (883)
T KOG2138|consen 561 DTFEWHPDKLLCKRFNVPDPYPGSTLVGLPRLKKDKYSVFDFLTDPVTASAPTT-------QPS-SE--KVPEKREPDKS 630 (883)
T ss_pred cccccccchhhhhhcCCCCCCCCccccCchhhhhccchhheecccccccccccc-------Ccc-cc--ccccccCCCCC
Confidence 9999999999999999999999977666 5555 99999999999987744221 111 11 01111111244
Q ss_pred hhcccccccccccccchhhhhcCCCcccccc-CCCCCCCCchhhHHHHHHHhhhhhhhhHHHHhhcccCccCCCCCCCCC
Q 001970 714 IEADIQVENVERPVDLYKAIFSDDSDDEVET-FNPKKVEDPEKKIEVANTALSHLIAGDFLESLGKELGLEVPHESPPYP 792 (988)
Q Consensus 714 ~~~~~q~e~~erpvdl~KAIFsddsdd~~~~-~~~~~~~~~~~~~e~a~~~l~~l~a~dfleslgkelg~~vp~~~~~~~ 792 (988)
-.+..+.|++.|++++||+||++|+.|.+++ .+...++...++.+++.++||++|+|||++++++|++.+|+.. -...
T Consensus 631 p~~~~~~e~k~r~k~d~k~efs~d~~d~~e~peq~~~~~~n~kk~~A~k~sln~~IfgD~de~~~~es~~e~~~~-ee~~ 709 (883)
T KOG2138|consen 631 PKPSRWDESKHRKKEDSKSEFSSDARDKAEPPEQQSSPLVNKKKEHAPKVSLNQTIFGDVDEQAEGESSRESMDL-EEAI 709 (883)
T ss_pred CCCCccchhhccCccchhhhhhccccCcccchhhcccccccccccccccchHHHHHhccchhhhcccccCccHHH-HHHH
Confidence 4566788899999999999999999998855 4444455588899999999999999999999999999999876 1100
Q ss_pred CCcCCCcccccc---ccccCCCCCCccccCCCCCccccccccccccccCcchhhhhhccCCccccCCCCCCCCCcccccc
Q 001970 793 TSKAKNPAQKET---SNANAGGNANILPVDNKSSSTRNAVSRTSIERWMPDQRETAQEGKSQKNEFTPGNPLNVSDKYKE 869 (988)
Q Consensus 793 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 869 (988)
-+.+...+++ +....-....+..++++- .+.
T Consensus 710 --~~ss~~e~s~~~ed~r~dre~~~~ek~ee~~--------------------------------------------~s~ 743 (883)
T KOG2138|consen 710 --FASSSDEKSSSSEDERGDREDDQAEKGEENF--------------------------------------------QSS 743 (883)
T ss_pred --hhcccchhhcccCcccccchhhhhhhhhhhh--------------------------------------------ccC
Confidence 0111222221 111110000011110000 001
Q ss_pred ccccccccCcccchhhhhccccccccC--CCCCCCCchHHHhhhhhccccCCCCCCCCCChhh----hhcccccccCCCC
Q 001970 870 TDKYKGEIGCERSKEDEKSKLTSSHHK--NRSSNSSSEDERSRKRSRRHRYSSDSYSDSSSEY----RDQHHSRSKGRSK 943 (988)
Q Consensus 870 ~~~~~~~~~~~~~~~~~k~k~~~~~~~--~~ss~~~~~~~~~r~~s~~~~~~~~s~s~~~~~~----~d~~~~~~~~r~~ 943 (988)
....++|++.-+ -.++.-|..... +.++...+++|+-++|=...+|+-.|.+.+...+ ++++.++++..++
T Consensus 744 ~~t~l~e~s~~k---l~~vpk~qe~~~~~diq~~e~~~~e~fgprlpp~~kpnaset~~~~l~ekh~kkK~k~kk~kekr 820 (883)
T KOG2138|consen 744 QDTDLGETSSVK---LALVPKPQEPPPSFDIQKMEIDEREEFGPRLPPVFKPNASETLEVPLKEKHKKKKDKHKKKKEKR 820 (883)
T ss_pred Cccccccccchh---hhcccCccCCCCccchhhhccChhhhcCCCCCCccCCCchhhhhhhHHHHhhhhhhhhHHHHHHH
Confidence 111222222211 123333444443 7788888899999999998899988888888765 2444444444444
Q ss_pred CCccccchhhhhccc----cCCCCCCCCcCcchHHHHHHHHHHhhhccC
Q 001970 944 GSSREKSSSRRKHRK----HRDRDSPRRSHNDAEKERTARKKDKKRRRD 988 (988)
Q Consensus 944 ~ss~ek~~s~kk~~~----~~~~~s~~~s~~~~~~~~~~~~~ek~~~~~ 988 (988)
.+| ||++|+|||++ |++..+.|+|.+|++.+.+.+.|||+++++
T Consensus 821 ~ks-ekskkhkkhkk~~~~k~rk~kkSss~~Ssd~sdk~s~kekk~~~~ 868 (883)
T KOG2138|consen 821 RKS-EKSKKHKKHKKKGKQKNRKPKKSSSSESSDSSDKQSDKEKKDVSP 868 (883)
T ss_pred Hhh-hhcccchhhcccchhhccCccccccccccccchhhhhhhhhccCh
Confidence 444 88888888888 888888889999999999999999998763
No 2
>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e.g Q8N3B7 from SWISSPROT).
Probab=100.00 E-value=1.6e-48 Score=350.13 Aligned_cols=85 Identities=65% Similarity=1.086 Sum_probs=82.2
Q ss_pred ccCCCCcccccccccccccccccccCccccccccccCCCCcccCcccchhhhhhHHhhcCcccccCchhhhhc-cccccc
Q 001970 37 RTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEF-EGKSFG 115 (988)
Q Consensus 37 ~~vPiwkQeVrDE~GRRRFHGAFTGGFSAGYfNTVGSKEGWtPstF~SSR~~Ra~~~~QrpEDFMDEEDl~E~-~~~~l~ 115 (988)
+|||+|+|+|+||+|||||||||||||||||||||||||||||++|+|||++|+..++|+||||||||||.|+ .++.|+
T Consensus 2 ~~~p~~~Q~v~De~GrrRFHGAFtGGfSAGyfNTVGSkeGW~P~~F~SSr~~r~~~~~q~~eDfMDeeD~~e~~~~~~l~ 81 (87)
T PF07713_consen 2 KYVPIWKQEVRDEQGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRQNRAKKKQQRPEDFMDEEDLAEFGAPRELQ 81 (87)
T ss_pred CccchhhheeeccccceeeeccccCCcccceeeccCCccCcCCcceeehhhhhcccccCChhhccCHHHHHHhcCCccce
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999 578899
Q ss_pred cccccc
Q 001970 116 TSLQFD 121 (988)
Q Consensus 116 t~~~fd 121 (988)
|+++||
T Consensus 82 ~~~~fd 87 (87)
T PF07713_consen 82 TTSDFD 87 (87)
T ss_pred ecccCC
Confidence 999886
No 3
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=98.22 E-value=1.2e-06 Score=74.11 Aligned_cols=52 Identities=40% Similarity=0.606 Sum_probs=47.4
Q ss_pred hHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCC--CCchhHHHHHHHH
Q 001970 400 LKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGG--NGHDYYARKLWEA 451 (988)
Q Consensus 400 ~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg--~g~~yy~rkl~e~ 451 (988)
++.+|+..|.+|+++|..||++.+++++.||.|+||.+. ..|.||.|+||+-
T Consensus 1 ~~~~I~~tA~~Va~~G~~fE~~l~~~~~~np~F~FL~~~~~~~~~yY~~~l~~y 54 (55)
T PF01805_consen 1 LREIIDKTAEFVAKNGPEFEEKLRERERNNPQFNFLFPSDSPYHAYYRWKLAEY 54 (55)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHTTTSGGGGGGSTTSSTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCcCcCCCCCCCchHHHHHHHHh
Confidence 367899999999999999999999999999999999954 6699999999974
No 4
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=97.95 E-value=3.6e-06 Score=68.94 Aligned_cols=21 Identities=48% Similarity=0.980 Sum_probs=19.7
Q ss_pred chHHHHHHHHhCcCCCCccch
Q 001970 160 ESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 160 esiGvkLLkkMGWreGQGIGp 180 (988)
++||.+||++|||++|||+|.
T Consensus 2 ~~~g~~lm~kmGw~~G~GLGk 22 (45)
T PF01585_consen 2 SSIGFKLMKKMGWKPGQGLGK 22 (45)
T ss_pred CcHHHHHHHHCCCCCCcCCCc
Confidence 579999999999999999995
No 5
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=97.76 E-value=2.9e-05 Score=65.39 Aligned_cols=50 Identities=40% Similarity=0.570 Sum_probs=45.7
Q ss_pred HHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCC-CCchhHHHHHHHH
Q 001970 402 LLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGG-NGHDYYARKLWEA 451 (988)
Q Consensus 402 ~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg-~g~~yy~rkl~e~ 451 (988)
.+|+-+|.+|+++|..||.+.+++++.||.|+||.+. ..|.||.|+|++.
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~~~n~~F~FL~~~~~~h~yy~~~l~~~ 52 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEY 52 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCccCCCCCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999999994 6699999999964
No 6
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=97.49 E-value=0.00011 Score=60.32 Aligned_cols=22 Identities=50% Similarity=0.972 Sum_probs=20.2
Q ss_pred CchHHHHHHHHhCcCCCCccch
Q 001970 159 TESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 159 ~esiGvkLLkkMGWreGQGIGp 180 (988)
..++|.+||++|||++|+|+|.
T Consensus 3 ~~~~g~~~l~~mGw~~G~GLG~ 24 (47)
T smart00443 3 TSNIGYKLLRKMGWKEGQGLGK 24 (47)
T ss_pred cccHHHHHHHHcCCCCCCcCCC
Confidence 4678999999999999999995
No 7
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=96.83 E-value=0.0013 Score=60.03 Aligned_cols=21 Identities=43% Similarity=0.849 Sum_probs=19.3
Q ss_pred chHHHHHHHHhCcCCCCccch
Q 001970 160 ESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 160 esiGvkLLkkMGWreGQGIGp 180 (988)
+.+|..|||-|||++|+|||.
T Consensus 30 e~FG~AlLRGMGW~~~~~~g~ 50 (77)
T PF12656_consen 30 EEFGAALLRGMGWKPGEGIGK 50 (77)
T ss_pred HHHHHHHHHHcCCCCCCCCCC
Confidence 458999999999999999995
No 8
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=96.45 E-value=0.0012 Score=79.29 Aligned_cols=23 Identities=35% Similarity=0.907 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHhCcCCCCccch
Q 001970 158 ATESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 158 ~~esiGvkLLkkMGWreGQGIGp 180 (988)
.-+.||.+||.|||||||+|||.
T Consensus 904 t~dNiGfQMLqKMGWKEGeGLGS 926 (988)
T KOG0965|consen 904 TDDNIGFQMLQKMGWKEGEGLGS 926 (988)
T ss_pred cccchHHHHHHHhCccccccccc
Confidence 45779999999999999999995
No 9
>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=0.025 Score=63.75 Aligned_cols=22 Identities=41% Similarity=0.783 Sum_probs=19.6
Q ss_pred CchHHHHHHHHhCcCCCCccch
Q 001970 159 TESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 159 ~esiGvkLLkkMGWreGQGIGp 180 (988)
....|.+||.+|||.+|.|+|-
T Consensus 25 ~~~fg~KlLekmGW~eG~GLG~ 46 (326)
T KOG2809|consen 25 DSRFGKKLLEKMGWSEGDGLGK 46 (326)
T ss_pred chHHHHHHHHHcCCccCCcccc
Confidence 3567999999999999999994
No 10
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.00 E-value=0.035 Score=61.61 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=23.9
Q ss_pred CcccCCCc--hHHHHHHHHhCcCCCCccch
Q 001970 153 ELVVPATE--SIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 153 dLi~p~~e--siGvkLLkkMGWreGQGIGp 180 (988)
.|.+-.+- +|..++|+|||||+|||+|.
T Consensus 203 ~fg~~~gg~ltvA~~im~k~G~keGqGLGK 232 (378)
T KOG1996|consen 203 SFGANTGGGLTVAHKIMQKYGFKEGQGLGK 232 (378)
T ss_pred hhhhhcccchhHHHHHHHHhCcccccCcCc
Confidence 55566666 89999999999999999995
No 11
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=91.80 E-value=0.15 Score=62.14 Aligned_cols=64 Identities=38% Similarity=0.636 Sum_probs=55.8
Q ss_pred CCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCC--CCchhHHHHHHHHHHhhc
Q 001970 393 PPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGG--NGHDYYARKLWEARQKRN 456 (988)
Q Consensus 393 ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg--~g~~yy~rkl~e~~~k~~ 456 (988)
-.|.|..+..+|+-++-+|-+.|.+||.|--++.-.||+|.||+.- .-|-||.|||...-|-.+
T Consensus 313 vip~d~~L~~vidrM~~fV~~egp~fea~im~re~~nplF~flfen~s~~htyyrwklySilQgdT 378 (877)
T KOG0151|consen 313 VIPTDRHLLMVIDRMAEFVVREGPMFEAMIMERERGNPLFSFLFENGSPAHTYYRWKLYSILQGDT 378 (877)
T ss_pred ecCchHHHHHHHHHHHHHHhccCccHHHHHHHhhccChhHHHHHhcCchHHHHHHHHHHHHHcCCC
Confidence 4588999999999999999999999999998888899999999974 449999999986644443
No 12
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=91.63 E-value=0.055 Score=57.29 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=19.9
Q ss_pred chHHHHHHHHhCcCCCCccch
Q 001970 160 ESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 160 esiGvkLLkkMGWreGQGIGp 180 (988)
.++|.+||-+-||-+++|.||
T Consensus 128 ks~GyrLl~~~GW~pe~GLGp 148 (223)
T KOG2384|consen 128 KSLGYRLLSQYGWSPEAGLGP 148 (223)
T ss_pred CCchHHHHHhcCCCcccCCCc
Confidence 479999999999999999998
No 13
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]
Probab=89.59 E-value=0.17 Score=58.60 Aligned_cols=22 Identities=36% Similarity=0.801 Sum_probs=19.8
Q ss_pred CchHHHHHHHHhCcCCCCccch
Q 001970 159 TESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 159 ~esiGvkLLkkMGWreGQGIGp 180 (988)
=+..|..||+=|||++|+|||-
T Consensus 153 Ve~FGlAmLrG~GWkpg~gigk 174 (455)
T KOG4315|consen 153 VEGFGLAMLRGMGWKPGPGIGK 174 (455)
T ss_pred hhHHHHHHHhcCCCCCCCCcCc
Confidence 3568999999999999999994
No 14
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=0.41 Score=52.49 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=15.3
Q ss_pred cCCCCCCCCchHHHhhhhhccccCCCCCCCCCChh
Q 001970 895 HKNRSSNSSSEDERSRKRSRRHRYSSDSYSDSSSE 929 (988)
Q Consensus 895 ~~~~ss~~~~~~~~~r~~s~~~~~~~~s~s~~~~~ 929 (988)
-.+.||.|.++.-|+|+-|.+-.|.+.|.|++++|
T Consensus 189 ~SdssSDS~~~~~r~rs~sk~ss~~~rs~s~sssd 223 (306)
T KOG2985|consen 189 ESDSSSDSGDRKRRRRSMSKRSSHKRRSLSESSSD 223 (306)
T ss_pred cccccccccchhhhhhhcccccccccccccccccc
Confidence 33444544444444444444434444444444444
No 15
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=84.05 E-value=0.8 Score=55.57 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=43.3
Q ss_pred CChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCCCch-hHH
Q 001970 396 EDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHD-YYA 445 (988)
Q Consensus 396 ~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~g~~-yy~ 445 (988)
...++...|+-.|.||.++|-.+|=|-+.||..||+|+||-----++ ||.
T Consensus 184 pt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~fDH~Lnpyyk 234 (878)
T KOG1847|consen 184 PTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLMFDHHLNPYYK 234 (878)
T ss_pred chHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceeccccccCHHHH
Confidence 36799999999999999999999999999999999999998854433 444
No 16
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=81.01 E-value=0.73 Score=55.85 Aligned_cols=34 Identities=24% Similarity=0.046 Sum_probs=23.6
Q ss_pred HHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCC
Q 001970 403 LIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGG 438 (988)
Q Consensus 403 ~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg 438 (988)
.|.-.|.-|+++|-.||+-... ..+-+|+||-+-
T Consensus 429 ~v~~~aE~Vaq~Gl~~e~S~~a--~~d~~~~f~~pk 462 (878)
T KOG1847|consen 429 GVIIRAEDVAQEGLAVEDSKHA--FGDVLPDFSAPK 462 (878)
T ss_pred HHHHHHHHHHhhchhhhhhhhh--hcccChhhccch
Confidence 3444577788999888875543 355688888874
No 17
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.77 E-value=1.8 Score=47.62 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=5.4
Q ss_pred HHHHHhhhcc
Q 001970 978 ARKKDKKRRR 987 (988)
Q Consensus 978 ~~~~ek~~~~ 987 (988)
.+++||||||
T Consensus 248 ~~~~~krrr~ 257 (306)
T KOG2985|consen 248 KSRKEKRRRR 257 (306)
T ss_pred hhHhHHHhhh
Confidence 3455666554
No 18
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=77.80 E-value=1.3 Score=50.38 Aligned_cols=10 Identities=10% Similarity=0.491 Sum_probs=6.0
Q ss_pred cccCCCCCCC
Q 001970 648 KRFDLIDPYI 657 (988)
Q Consensus 648 KRFNVpdP~~ 657 (988)
.+++||-|+-
T Consensus 195 R~~eIpLp~~ 204 (367)
T KOG0835|consen 195 RNLEIPLPFQ 204 (367)
T ss_pred hhhcCCCCCC
Confidence 5666666553
No 19
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=72.96 E-value=1.8 Score=50.39 Aligned_cols=20 Identities=45% Similarity=0.770 Sum_probs=18.6
Q ss_pred hHHHHHHHHhCcCCCCccch
Q 001970 161 SIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 161 siGvkLLkkMGWreGQGIGp 180 (988)
-||.|||-|||++.|.|.|-
T Consensus 298 GIgsKLM~kMGY~~G~GLG~ 317 (486)
T KOG2185|consen 298 GIGSKLMAKMGYREGMGLGV 317 (486)
T ss_pred hHHHHHHHHhchhhccccCc
Confidence 49999999999999999994
No 20
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=70.96 E-value=0.82 Score=47.26 Aligned_cols=17 Identities=29% Similarity=0.508 Sum_probs=15.4
Q ss_pred ccccCccccccccccCC
Q 001970 58 AFTGGFSAGYYNTVGSK 74 (988)
Q Consensus 58 AFTGGFSAGYfNTVGSK 74 (988)
||-|||+||+|||+++-
T Consensus 114 ~~rgg~~A~~~q~~A~~ 130 (157)
T PF14127_consen 114 ELRGGWRAFWYQTFAWL 130 (157)
T ss_pred HhhCChhHHHHHHHHHH
Confidence 78999999999999863
No 21
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=61.68 E-value=4.3 Score=50.80 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=22.8
Q ss_pred cccCCCchHHHHHHHHhCcCCCCccch
Q 001970 154 LVVPATESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 154 Li~p~~esiGvkLLkkMGWreGQGIGp 180 (988)
-+.-...-||.|||.+||+++|+|.|-
T Consensus 110 ~~e~~t~gig~Kll~kMGYkpG~GLGk 136 (767)
T KOG2184|consen 110 DFEKGTKGIGAKLLEKMGYKPGKGLGK 136 (767)
T ss_pred hhhhcccchhHHHHHHcCCccccccCc
Confidence 345566779999999999999999884
No 22
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=59.99 E-value=4.5 Score=47.11 Aligned_cols=8 Identities=75% Similarity=0.912 Sum_probs=3.4
Q ss_pred HHHHHhhh
Q 001970 978 ARKKDKKR 985 (988)
Q Consensus 978 ~~~~ek~~ 985 (988)
-.||+|++
T Consensus 385 R~kkdKkr 392 (479)
T KOG4676|consen 385 RNKKDKKR 392 (479)
T ss_pred chhhhhhh
Confidence 34444443
No 23
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=59.02 E-value=5.9 Score=46.19 Aligned_cols=8 Identities=63% Similarity=1.066 Sum_probs=4.0
Q ss_pred cccCCCCC
Q 001970 481 KLLGERPL 488 (988)
Q Consensus 481 ~~LGE~pl 488 (988)
-|+|+.||
T Consensus 115 ~Lp~~~~l 122 (479)
T KOG4676|consen 115 VLPGDRPL 122 (479)
T ss_pred ccCCCCcc
Confidence 34455554
No 24
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=55.84 E-value=6.5 Score=40.56 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=12.6
Q ss_pred CCCCCCCchHHHhhhhhccc
Q 001970 897 NRSSNSSSEDERSRKRSRRH 916 (988)
Q Consensus 897 ~~ss~~~~~~~~~r~~s~~~ 916 (988)
-+|+++.+||++++.+....
T Consensus 114 E~ssSS~SeDs~~~~s~s~~ 133 (177)
T KOG3116|consen 114 EYSSSSDSEDSRRRRSKSKK 133 (177)
T ss_pred cccccccccccccccccccc
Confidence 35566677787776655443
No 25
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=55.78 E-value=9.2 Score=47.50 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=4.6
Q ss_pred ccCcccchh
Q 001970 78 TPQTFTSSR 86 (988)
Q Consensus 78 tPstF~SSR 86 (988)
+|.+|+-.+
T Consensus 13 ~p~~~~re~ 21 (877)
T KOG0151|consen 13 KPKLSKREN 21 (877)
T ss_pred ccchhhhhh
Confidence 555555443
No 26
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=52.12 E-value=5.9 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.853 Sum_probs=19.9
Q ss_pred CchHHHHHHHHhCcCCCCccch
Q 001970 159 TESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 159 ~esiGvkLLkkMGWreGQGIGp 180 (988)
...+|-+||++|||++|+|.|-
T Consensus 511 ~sn~~~~~l~~~gw~~g~Glg~ 532 (573)
T KOG0154|consen 511 TSNVGNRMLQSMGWKEGSGLGK 532 (573)
T ss_pred CCccchhhhhccCccccccccc
Confidence 4579999999999999999984
No 27
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=49.67 E-value=10 Score=42.68 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=12.2
Q ss_pred ccccccCCCCCCCCchHHH
Q 001970 890 LTSSHHKNRSSNSSSEDER 908 (988)
Q Consensus 890 ~~~~~~~~~ss~~~~~~~~ 908 (988)
.|-.-..+.||++++|+||
T Consensus 296 RpN~~~sd~sssssse~eR 314 (354)
T KOG2146|consen 296 RPNDTDSDVSSSSSSEEER 314 (354)
T ss_pred CCCcccccccccccchhhh
Confidence 3444555667777778877
No 28
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=47.90 E-value=7.9 Score=42.35 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.0
Q ss_pred CchHHHHHHHHhCcCCCCccch
Q 001970 159 TESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 159 ~esiGvkLLkkMGWreGQGIGp 180 (988)
.+++|..||.+||+++|.-||.
T Consensus 80 ~e~~gf~lm~~Mg~kpg~~lgk 101 (268)
T KOG1994|consen 80 AEKPGFSLMNDMGMKPGRFLGK 101 (268)
T ss_pred ccCcChHHHHHhCCCccchhcc
Confidence 4789999999999999999994
No 29
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=46.35 E-value=11 Score=41.23 Aligned_cols=9 Identities=67% Similarity=1.007 Sum_probs=3.5
Q ss_pred HHhhhhhcc
Q 001970 907 ERSRKRSRR 915 (988)
Q Consensus 907 ~~~r~~s~~ 915 (988)
+++++..++
T Consensus 48 ~~~~~k~~r 56 (225)
T PF10500_consen 48 SRSRKKKRR 56 (225)
T ss_pred cchhhhhhc
Confidence 334443333
No 30
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=41.50 E-value=14 Score=35.58 Aligned_cols=12 Identities=42% Similarity=0.900 Sum_probs=10.3
Q ss_pred HHHHHHHhCcCC
Q 001970 163 GVKLLLKMGWRR 174 (988)
Q Consensus 163 GvkLLkkMGWre 174 (988)
-.+|||-|||.+
T Consensus 12 EhRLLk~MGWqE 23 (97)
T PF15337_consen 12 EHRLLKAMGWQE 23 (97)
T ss_pred HHHHHHHhcccc
Confidence 368999999986
No 31
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=40.36 E-value=13 Score=42.78 Aligned_cols=47 Identities=36% Similarity=0.411 Sum_probs=22.9
Q ss_pred HhhhhhccccCCCCCCCCCChhhhhcccccccCCCCCCccccchhhh
Q 001970 908 RSRKRSRRHRYSSDSYSDSSSEYRDQHHSRSKGRSKGSSREKSSSRR 954 (988)
Q Consensus 908 ~~r~~s~~~~~~~~s~s~~~~~~~d~~~~~~~~r~~~ss~ek~~s~k 954 (988)
++++.|..+..+.++..+++|-.|+|..+|+|.|.++-+|..|.|.+
T Consensus 303 k~~sesp~~~~~k~~~~~r~srsR~rs~~r~k~rsR~~srsrSrsg~ 349 (367)
T KOG0835|consen 303 KSKSESPSNGRRKDSSRSRSSRSRSRSRDRSKKRSRHRSRSRSRSGR 349 (367)
T ss_pred cccccCCCCCCcCCccccccccccccccccchhhhhccccCCCCCCC
Confidence 44455555555544444444444555555555554444444444443
No 32
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=35.51 E-value=18 Score=41.67 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=9.4
Q ss_pred cccccchhhh--hcCCCcccc
Q 001970 724 ERPVDLYKAI--FSDDSDDEV 742 (988)
Q Consensus 724 erpvdl~KAI--Fsddsdd~~ 742 (988)
+.|-|||--. |-||++|++
T Consensus 169 qpp~dLw~WyEpyldDdeeid 189 (453)
T KOG2888|consen 169 QPPADLWDWYEPYLDDDEEID 189 (453)
T ss_pred CChhHHHHHhhhhccchhhcC
Confidence 4455655433 345555555
No 33
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=33.56 E-value=25 Score=42.91 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.9
Q ss_pred CchHHHHHHHHhCcCCCCccch
Q 001970 159 TESIGVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 159 ~esiGvkLLkkMGWreGQGIGp 180 (988)
-.++..+||.+||.+.|.|+|.
T Consensus 82 y~~va~~lMakMG~~~geGLGK 103 (845)
T KOG3673|consen 82 YLTVAERLMAKMGHKAGEGLGK 103 (845)
T ss_pred cchHHHHHHHHhCccccccccc
Confidence 4689999999999999999985
No 34
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=30.00 E-value=73 Score=40.11 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=25.5
Q ss_pred CCCceecCCCCCCcccc---cCCCCCchhhH
Q 001970 226 CTPVYVLNPKQDLHGLG---YDPYKNAPEFR 253 (988)
Q Consensus 226 dtp~~~~~pK~d~~GLG---Y~p~~~a~ef~ 253 (988)
-++.+.+.|+..+||+| |.++++.++|+
T Consensus 222 g~~y~gLnp~q~L~gssg~~~~pfkh~~ef~ 252 (883)
T KOG2138|consen 222 GMSYSGLNPDQILSGSSGSSAKPFKHGNEFG 252 (883)
T ss_pred cccccccCcchhhccccccccchhcccchhc
Confidence 44788899999999999 99999999997
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=29.95 E-value=28 Score=42.30 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=4.9
Q ss_pred ccccCCCCCCccc
Q 001970 936 SRSKGRSKGSSRE 948 (988)
Q Consensus 936 ~~~~~r~~~ss~e 948 (988)
+|++.|.+.++|+
T Consensus 96 srsr~r~~~rsRs 108 (549)
T KOG0147|consen 96 SRSRDRQLRRSRS 108 (549)
T ss_pred hhccccccchhhh
Confidence 3333333333333
No 36
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.20 E-value=37 Score=36.52 Aligned_cols=17 Identities=59% Similarity=0.710 Sum_probs=12.4
Q ss_pred HhhhhhccccCC-CCCCC
Q 001970 908 RSRKRSRRHRYS-SDSYS 924 (988)
Q Consensus 908 ~~r~~s~~~~~~-~~s~s 924 (988)
|+-+|+|||+|. .+|+|
T Consensus 199 ~r~~r~RHh~hs~~ds~s 216 (238)
T KOG4520|consen 199 RRTHRSRHHRHSTTDSHS 216 (238)
T ss_pred cccccccccccccccccc
Confidence 366889999987 46655
No 37
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=24.19 E-value=27 Score=43.61 Aligned_cols=17 Identities=53% Similarity=1.075 Sum_probs=13.9
Q ss_pred ccccccccCcccccccc
Q 001970 54 RFHGAFTGGFSAGYYNT 70 (988)
Q Consensus 54 RFHGAFTGGFSAGYfNT 70 (988)
.|-=-|.||+|||||-.
T Consensus 601 ~F~HIFagGYsAGYYSY 617 (683)
T COG0339 601 SFGHIFAGGYSAGYYSY 617 (683)
T ss_pred cccceecCcccchhHHH
Confidence 56667899999999953
No 38
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=22.21 E-value=84 Score=37.20 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=17.3
Q ss_pred CCc--ccccccccCcccccccCCCCCCCCCCCC
Q 001970 632 YPR--REEFQWRPSPILCKRFDLIDPYIGKPPP 662 (988)
Q Consensus 632 fGt--Re~~eW~P~~LLCKRFNVpdP~~G~~~~ 662 (988)
||. |.+.+|+ |.+|+-..=--.||.-
T Consensus 118 FGiqVRNVrC~k-----ChkwGH~n~DreCplf 145 (453)
T KOG3794|consen 118 FGIQVRNVRCLK-----CHKWGHINTDRECPLF 145 (453)
T ss_pred cceEeeeeeEEe-----ecccccccCCccCcch
Confidence 552 6666654 8888887766667653
No 39
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=64 Score=38.36 Aligned_cols=48 Identities=31% Similarity=0.315 Sum_probs=27.2
Q ss_pred hhhhhcccccccCCCCCCccccchhhh----hccccCCCCCCCCcCcchHHH
Q 001970 928 SEYRDQHHSRSKGRSKGSSREKSSSRR----KHRKHRDRDSPRRSHNDAEKE 975 (988)
Q Consensus 928 ~~~~d~~~~~~~~r~~~ss~ek~~s~k----k~~~~~~~~s~~~s~~~~~~~ 975 (988)
+-.+-+.++||.+++++-.++-+.++. +-..|+...|.+.||.-..+.
T Consensus 230 ~~~r~r~k~rS~~~~~~~~~e~~r~~~r~~~~~~~~~r~rS~~~sh~q~~r~ 281 (450)
T KOG3869|consen 230 SAERHRRKSRSPRRKGHEPREMSRSHSRSADKASSSRRSRSHSPSHLQHQRS 281 (450)
T ss_pred hHHHHhhhhcccccccccchhhhhhccchhhhhhhhhhhhccccCchHHHHh
Confidence 344666677888888887777764433 333344444444455544433
Done!