Query 001970
Match_columns 988
No_of_seqs 165 out of 206
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4o_A Splicing factor 4; stru 99.1 3.7E-11 1.3E-15 107.2 5.6 68 386-453 3-72 (78)
2 1ug0_A Splicing factor 4; SURP 99.0 2.4E-10 8.3E-15 104.1 3.3 65 390-454 17-83 (88)
3 2e60_A SFRS8 protein, splicing 98.8 4.7E-09 1.6E-13 97.9 7.2 69 388-456 15-84 (101)
4 2e5z_A SFRS8 protein, splicing 98.8 6.8E-09 2.3E-13 95.0 7.8 62 398-461 22-84 (90)
5 2dt6_A Splicing factor 3 subun 98.6 4.2E-08 1.4E-12 84.3 5.5 58 399-456 2-60 (64)
6 2dt7_B Splicing factor 3 subun 97.4 0.00017 5.8E-09 65.5 6.1 57 394-450 25-82 (85)
7 1x4p_A Putative splicing facto 96.0 0.0044 1.5E-07 53.5 3.5 55 398-454 5-61 (66)
8 4dgw_B PRE-mRNA-splicing facto 88.9 0.34 1.2E-05 48.3 4.6 46 402-449 9-55 (152)
9 4anr_A Soluble lytic transglyc 11.6 90 0.0031 34.6 2.0 28 153-180 201-230 (323)
10 1qus_A Lytic murein transglyco 9.3 1.2E+02 0.0041 33.5 2.0 27 153-180 206-234 (322)
No 1
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.13 E-value=3.7e-11 Score=107.20 Aligned_cols=68 Identities=37% Similarity=0.529 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccC--CCCchhHHHHHHHHHH
Q 001970 386 VPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTG--GNGHDYYARKLWEARQ 453 (988)
Q Consensus 386 ~~~pp~~ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsg--g~g~~yy~rkl~e~~~ 453 (988)
+.+++.++||.|+..|.+|+.+|.+|+++|..||++.+++++.||.|+||.+ ...|.||+||||+.++
T Consensus 3 ~~~~~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~ 72 (78)
T 1x4o_A 3 SGSSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRK 72 (78)
T ss_dssp CCCCSCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHh
Confidence 3567778999999999999999999999999999999999999999999984 4679999999998744
No 2
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=98.95 E-value=2.4e-10 Score=104.11 Aligned_cols=65 Identities=34% Similarity=0.571 Sum_probs=58.9
Q ss_pred CCCCCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccC--CCCchhHHHHHHHHHHh
Q 001970 390 PEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTG--GNGHDYYARKLWEARQK 454 (988)
Q Consensus 390 p~~ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsg--g~g~~yy~rkl~e~~~k 454 (988)
..++||.|+..|.+|+.+|.+|+++|..||++.+++++.||.|+||.+ ...|.||+||||+.++.
T Consensus 17 v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g 83 (88)
T 1ug0_A 17 IKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKS 83 (88)
T ss_dssp SCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHS
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHcc
Confidence 346789999999999999999999999999999999999999999987 36699999999987554
No 3
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=4.7e-09 Score=97.93 Aligned_cols=69 Identities=26% Similarity=0.404 Sum_probs=60.5
Q ss_pred CCCCCCCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCC-CCchhHHHHHHHHHHhhc
Q 001970 388 LPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGG-NGHDYYARKLWEARQKRN 456 (988)
Q Consensus 388 ~pp~~ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg-~g~~yy~rkl~e~~~k~~ 456 (988)
+|..+.+|.|.+.+.+|+..|.+|+++|..||.+.+++++.||.|+||..+ ..|.||+|+||+.++...
T Consensus 15 ~P~~v~~P~~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~~~~~~h~YY~~kl~~~~~g~~ 84 (101)
T 2e60_A 15 VPSDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRY 84 (101)
T ss_dssp CCSSSCCCSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGSTTSTHHHHHHHHHHHHHHTSC
T ss_pred CCCCccCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCCCCCCCcHHHHHHHHHHHcCCC
Confidence 455666777999999999999999999999999999999999999999765 458999999998765543
No 4
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=6.8e-09 Score=95.04 Aligned_cols=62 Identities=29% Similarity=0.327 Sum_probs=55.2
Q ss_pred hhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCC-CchhHHHHHHHHHHhhcccccc
Q 001970 398 NNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGN-GHDYYARKLWEARQKRNDQTKL 461 (988)
Q Consensus 398 ~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~-g~~yy~rkl~e~~~k~~~~~~~ 461 (988)
|..|.+|+.+|.+|+|+|..||++.+++ .||.|+||.++. .|.||.||||+.+++..+....
T Consensus 22 pdir~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~~~pyh~YY~~kl~e~~~~~~~~~~~ 84 (90)
T 2e5z_A 22 PDVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGDSMQ 84 (90)
T ss_dssp TTTHHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSSSCSTHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCCCCcccHHHHHHHHHHHhccCCCCcc
Confidence 4589999999999999999999999876 699999999975 4899999999999988876444
No 5
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=98.59 E-value=4.2e-08 Score=84.34 Aligned_cols=58 Identities=31% Similarity=0.556 Sum_probs=52.5
Q ss_pred hhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCC-CchhHHHHHHHHHHhhc
Q 001970 399 NLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGN-GHDYYARKLWEARQKRN 456 (988)
Q Consensus 399 ~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~-g~~yy~rkl~e~~~k~~ 456 (988)
..|.+|+-.|.+|+++|..||.+.+++++.||.|+||.++. .|.||.|+||+.++...
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g~~ 60 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKA 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCCCCCCchHHHHHHHHHHcCCC
Confidence 46889999999999999999999999999999999999974 68999999998866543
No 6
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=97.43 E-value=0.00017 Score=65.47 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=49.1
Q ss_pred CCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCCC-chhHHHHHHH
Q 001970 394 PPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNG-HDYYARKLWE 450 (988)
Q Consensus 394 pp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~g-~~yy~rkl~e 450 (988)
|.-..+.-..|.-.|++||++|..||.+-++++..||.|+||.+... |.||.+++.+
T Consensus 25 p~i~~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~ 82 (85)
T 2dt7_B 25 PSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQ 82 (85)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHH
Confidence 34455666899999999999999999999999999999999999754 7889987754
No 7
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=95.97 E-value=0.0044 Score=53.53 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=46.0
Q ss_pred hhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCCC--chhHHHHHHHHHHh
Q 001970 398 NNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNG--HDYYARKLWEARQK 454 (988)
Q Consensus 398 ~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~g--~~yy~rkl~e~~~k 454 (988)
|..|.+|+-++.+|+.-|...+.++- ++.||.|.||+..+. +.||+.||.|-|+.
T Consensus 5 ~~~~~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~r~~ 61 (66)
T 1x4p_A 5 SSGVGTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEMQRS 61 (66)
T ss_dssp CCSSHHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHHHhh
Confidence 46688999999999999988776654 899999999999754 77799999987554
No 8
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=88.89 E-value=0.34 Score=48.32 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCCC-chhHHHHHH
Q 001970 402 LLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNG-HDYYARKLW 449 (988)
Q Consensus 402 ~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~g-~~yy~rkl~ 449 (988)
..|.-.|++||++|. |..--+.+.. ||.|+||-+... |.||.+.+-
T Consensus 9 dIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~p~h~l~~~F~~lv~ 55 (152)
T 4dgw_B 9 EVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMNSSHPLHKTFTDFVA 55 (152)
T ss_dssp HHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGSTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHheecCH-HHHHHHHhcc-CcccccCCCCCccHHHHHHHHH
Confidence 467778999999999 9987777888 999999999855 777776443
No 9
>4anr_A Soluble lytic transglycosylase B; lyase, EF-hand like motif, peptidoglycan; 1.84A {Pseudomonas aeruginosa}
Probab=11.59 E-value=90 Score=34.59 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=21.3
Q ss_pred CcccCCCchH--HHHHHHHhCcCCCCccch
Q 001970 153 ELVVPATESI--GVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 153 dLi~p~~esi--GvkLLkkMGWreGQGIGp 180 (988)
||.....|.| +...|+++||+.|+.+|-
T Consensus 201 D~~~~~~Dai~S~AnyL~~~GW~~g~pwg~ 230 (323)
T 4anr_A 201 NIWSDPTDAIGSVASYFKQHGWVTGEPVVS 230 (323)
T ss_dssp CTTTCHHHHHHHHHHHHHHTTCCTTCCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 5553444655 578999999999999984
No 10
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Probab=9.34 E-value=1.2e+02 Score=33.50 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=20.8
Q ss_pred CcccCCCchH--HHHHHHHhCcCCCCccch
Q 001970 153 ELVVPATESI--GVKLLLKMGWRRGRSIKD 180 (988)
Q Consensus 153 dLi~p~~esi--GvkLLkkMGWreGQGIGp 180 (988)
||.- ..|.| +...|+.+||+.|+.+|-
T Consensus 206 D~~~-~~Dai~S~A~YL~~~Gw~~g~~wg~ 234 (322)
T 1qus_A 206 NLWD-PVDAIGSVANYFKAHGWVKGDQVAV 234 (322)
T ss_dssp CTTS-HHHHHHHHHHHHHHTTCCTTCCSEE
T ss_pred CCCC-HHHHHHHHHHHHHHcCCCCCCceeE
Confidence 5554 44554 678999999999999984
Done!