Query 001970
Match_columns 988
No_of_seqs 165 out of 206
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 06:49:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4oa1 a.217.1.1 (A:8-72) Spl 98.9 2.4E-10 1.8E-14 96.6 4.8 61 392-452 2-64 (65)
2 d1ug0a_ a.217.1.1 (A:) Splicin 98.7 3.7E-09 2.7E-13 94.2 3.7 63 390-452 17-81 (88)
3 d2dt6a1 a.217.1.1 (A:48-110) S 98.5 8.5E-08 6.2E-12 80.4 5.8 56 400-455 2-58 (63)
4 d2dt7b1 a.217.1.1 (B:134-217) 97.4 0.00015 1.1E-08 63.5 8.0 51 401-451 31-82 (84)
5 d1pgsa1 b.121.1.1 (A:4-140) Pe 13.6 23 0.0017 32.6 0.6 17 55-71 12-28 (137)
6 d1x4pa1 a.217.1.1 (A:8-60) Arg 13.1 45 0.0033 25.6 2.1 34 419-452 17-52 (53)
7 d1opka1 b.34.2.1 (A:83-139) Ab 10.6 22 0.0016 27.4 -0.5 21 61-84 34-54 (57)
8 d2uuyb1 g.8.1.3 (B:24-74) Tryp 10.4 36 0.0026 25.5 0.7 13 53-65 30-42 (51)
9 d2ccqa1 d.314.1.1 (A:11-109) N 10.0 46 0.0033 28.6 1.3 15 163-177 61-75 (99)
10 d1phta_ b.34.2.1 (A:) Phosphat 7.2 32 0.0023 28.6 -0.9 22 62-84 52-73 (83)
No 1
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.94 E-value=2.4e-10 Score=96.56 Aligned_cols=61 Identities=41% Similarity=0.607 Sum_probs=55.8
Q ss_pred CCCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccC--CCCchhHHHHHHHHH
Q 001970 392 IPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTG--GNGHDYYARKLWEAR 452 (988)
Q Consensus 392 ~ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsg--g~g~~yy~rkl~e~~ 452 (988)
+.||.|+..+.+|+.+|.+|+++|..||++.+++++.||.|+||.. ...|.||+|+||+.+
T Consensus 2 V~pP~d~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~~~~~~~~~YYr~kl~~~~ 64 (65)
T d1x4oa1 2 VSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFR 64 (65)
T ss_dssp SCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCceeecCCCCCCcHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999963 466899999999764
No 2
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.68 E-value=3.7e-09 Score=94.21 Aligned_cols=63 Identities=35% Similarity=0.581 Sum_probs=56.6
Q ss_pred CCCCCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccC--CCCchhHHHHHHHHH
Q 001970 390 PEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTG--GNGHDYYARKLWEAR 452 (988)
Q Consensus 390 p~~ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsg--g~g~~yy~rkl~e~~ 452 (988)
..++||.|+..+.+|+-.|.+|+++|..||.+.+++++.||.|+||.. ...|.||+||||+.+
T Consensus 17 i~v~pP~d~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~~~~~~~YY~~kl~e~~ 81 (88)
T d1ug0a_ 17 IKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIR 81 (88)
T ss_dssp SCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeCCCCCCCcHHHHHHHHHHH
Confidence 446778899999999999999999999999999999999999999973 345999999999874
No 3
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.45 E-value=8.5e-08 Score=80.38 Aligned_cols=56 Identities=32% Similarity=0.572 Sum_probs=50.8
Q ss_pred hHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCC-CchhHHHHHHHHHHhh
Q 001970 400 LKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGN-GHDYYARKLWEARQKR 455 (988)
Q Consensus 400 ~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~-g~~yy~rkl~e~~~k~ 455 (988)
.|.+|+..|.+|+++|..||++.++++..||.|+||.+.. -|.||.|+|++.++..
T Consensus 2 i~~iI~~tA~fVak~G~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g~ 58 (63)
T d2dt6a1 2 VRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHhccCCCcCcCCCCCCCCcHHHHHHHHHHHcCC
Confidence 5889999999999999999999999999999999999974 4899999999875543
No 4
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.44 E-value=0.00015 Score=63.52 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=45.7
Q ss_pred HHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCCC-chhHHHHHHHH
Q 001970 401 KLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNG-HDYYARKLWEA 451 (988)
Q Consensus 401 R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~g-~~yy~rkl~e~ 451 (988)
-.+|+..|.+|+++|..||.+-++++..||.|+||..... |.||++.+++-
T Consensus 31 l~iI~~tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y 82 (84)
T d2dt7b1 31 LDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQY 82 (84)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHH
Confidence 3589999999999999999999999999999999988755 88999988753
No 5
>d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]}
Probab=13.63 E-value=23 Score=32.57 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=13.3
Q ss_pred cccccccCccccccccc
Q 001970 55 FHGAFTGGFSAGYYNTV 71 (988)
Q Consensus 55 FHGAFTGGFSAGYfNTV 71 (988)
-|++|+|||++.+--||
T Consensus 12 ~~~~~ggG~~~~~~~~~ 28 (137)
T d1pgsa1 12 VKNAFGDGLSQSAEGTF 28 (137)
T ss_dssp EEECCSSSCCSEEEEEE
T ss_pred hhccccCCccceEEEEE
Confidence 38999999888776555
No 6
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.07 E-value=45 Score=25.64 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=25.6
Q ss_pred hhhHHhhhcCCCCcccccCCCCchh--HHHHHHHHH
Q 001970 419 EDISREKNQSNPLFSFLTGGNGHDY--YARKLWEAR 452 (988)
Q Consensus 419 Ed~~~ek~k~np~Fdflsgg~g~~y--y~rkl~e~~ 452 (988)
..-.|..++.+|-|=||+..+.++| |.=||.|-|
T Consensus 17 spkeR~~~k~~P~yWFLsde~SlEyKYYkLkLae~Q 52 (53)
T d1x4pa1 17 SPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQ 52 (53)
T ss_dssp CHHHHHHHHHSGGGCTTTCCSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHhhcCCCeEEeecccchhHHHHHhhHHHhc
Confidence 3334445678999999999988776 888888754
No 7
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.62 E-value=22 Score=27.36 Aligned_cols=21 Identities=19% Similarity=0.665 Sum_probs=14.9
Q ss_pred cCccccccccccCCCCcccCcccc
Q 001970 61 GGFSAGYYNTVGSKEGWTPQTFTS 84 (988)
Q Consensus 61 GGFSAGYfNTVGSKEGWtPstF~S 84 (988)
|||-.|.. +.++||-|++|+.
T Consensus 34 ~~W~~~~~---~g~~G~~P~~yv~ 54 (57)
T d1opka1 34 GEWCEAQT---KNGQGWVPSNYIT 54 (57)
T ss_dssp SSEEEEEC---SSCEEEEEGGGEE
T ss_pred CCEEEEEE---CCCEeEEchhheE
Confidence 45655543 4589999999974
No 8
>d2uuyb1 g.8.1.3 (B:24-74) Tryptase inhibitor {Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]}
Probab=10.42 E-value=36 Score=25.52 Aligned_cols=13 Identities=38% Similarity=1.045 Sum_probs=10.2
Q ss_pred cccccccccCccc
Q 001970 53 RRFHGAFTGGFSA 65 (988)
Q Consensus 53 RRFHGAFTGGFSA 65 (988)
+-+.|.||||+|-
T Consensus 30 kvyegcytggysr 42 (51)
T d2uuyb1 30 KVYEGCYTGGYSR 42 (51)
T ss_dssp EEEEESCCSSBSS
T ss_pred hhhccccccccch
Confidence 4567999999873
No 9
>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.95 E-value=46 Score=28.64 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=12.8
Q ss_pred HHHHHHHhCcCCCCc
Q 001970 163 GVKLLLKMGWRRGRS 177 (988)
Q Consensus 163 GvkLLkkMGWreGQG 177 (988)
|..+|..|||+++++
T Consensus 61 a~e~L~~~GF~e~~~ 75 (99)
T d2ccqa1 61 AVECLFEMGFEEGET 75 (99)
T ss_dssp HHHHHHHHTCEECSS
T ss_pred HHHHHHHcCceeCCc
Confidence 668999999998765
No 10
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.20 E-value=32 Score=28.61 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=16.8
Q ss_pred CccccccccccCCCCcccCcccc
Q 001970 62 GFSAGYYNTVGSKEGWTPQTFTS 84 (988)
Q Consensus 62 GFSAGYfNTVGSKEGWtPstF~S 84 (988)
||--|+ |..+.+.||-|++|+-
T Consensus 52 GW~~G~-~~~~g~~G~FP~nYVe 73 (83)
T d1phta_ 52 GWLNGY-NETTGERGDFPGTYVE 73 (83)
T ss_dssp CEEEEE-ETTTTEEEEEEGGGEE
T ss_pred CeEEEE-ECCCCcEeeEehhhEE
Confidence 455555 6667799999999984
Done!