BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001971
(988 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 4
Length = 94
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 62/75 (82%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
+CQV+ C AD+ AK YHRRHKVCE+H+KAS + + QRFCQQCSRFH LQEFDE KR
Sbjct: 10 LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 69
Query: 209 SCRRRLAGHNKRRRK 223
SCRRRLAGHN+RRRK
Sbjct: 70 SCRRRLAGHNERRRK 84
>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 12 Lacking The Second
Zinc- Binding Site
Length = 60
Score = 110 bits (276), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204
CQV++CGADLS KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 6 CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
Promoter Binding Protein-like 7
Length = 88
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 56/80 (70%)
Query: 148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGK 207
A CQV DC AD+S K YH+RH+VC + AS ++ +R+CQQC +FH+L +FDEGK
Sbjct: 4 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 63
Query: 208 RSCRRRLAGHNKRRRKTNPD 227
RSCRR+L HN RR++ D
Sbjct: 64 RSCRRKLERHNNRRKRKPVD 83
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H AA K+G ++++ L V NA+DS G TP YA GH + L+
Sbjct: 70 GRTPLHYAA-KEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 875 QKK---INKRPNGGHVVVDI 891
K +N + G +D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H AA K+G ++++ L V NA+DS G TP YA GH + L+
Sbjct: 37 GRTPLHYAA-KEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 875 QKK 877
K
Sbjct: 90 ISK 92
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 821 IAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKK 877
I A ++G++D + L ++ V NA DS G TP YA GH + L+ K
Sbjct: 9 IEAAENGNKDRVKDLIENGADV------NASDSDGRTPLHYAAKEGHKEIVKLLISK 59
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA K+G +++ L V NAR G+TPE A+ GH+ + L+
Sbjct: 42 GNTPLHLAA-KNGHAEIVKLLLAKGADV------NARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 875 QKK---INKRPNG 884
K +N R G
Sbjct: 95 DAKGADVNARSWG 107
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H AA +E+V L+ + NAR G+TP A GH + L+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADV-------NARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 875 QKK---INKRPNGGH 886
K +N R G+
Sbjct: 62 LAKGADVNARSKDGN 76
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
GLTP+H+AA +G ++++ L + V NA DS+G TP A GH + ++
Sbjct: 39 GLTPLHLAAA-NGQLEIVEVLLKNGADV------NASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 875 QK 876
K
Sbjct: 92 LK 93
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
AG+TP+H+AA DG ++++ L V NA D +G TP A L G + +
Sbjct: 71 AGITPLHLAA-YDGHLEIVEVLLKHGADV------NAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 874 VQK 876
+ K
Sbjct: 124 LLK 126
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 808 PDVIGPAGLTPIHIAAGKDGSEDVLDALTD---DPGMVGIEAWKNARDSSGSTPEDYARL 864
P+ G TP+H AA ++G ++++ L DP NA+DS G TP YA
Sbjct: 30 PNASDSDGRTPLHYAA-ENGHKEIVKLLLSKGADP---------NAKDSDGRTPLHYAAE 79
Query: 865 RGHYSYIHLVQKK 877
GH + L+ K
Sbjct: 80 NGHKEIVKLLLSK 92
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 808 PDVIGPAGLTPIHIAAGKDGSEDVLDALTD---DPGMVGIEAWKNARDSSGSTPEDYARL 864
P+ G TP+H AA ++G ++++ L DP NA+DS G TP YA
Sbjct: 63 PNAKDSDGRTPLHYAA-ENGHKEIVKLLLSKGADP---------NAKDSDGRTPLHYAAE 112
Query: 865 RGHYSYIHLVQKK 877
GH + L+ K
Sbjct: 113 NGHKEIVKLLLSK 125
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
GLTP+H+AA + G ++++ L V NA D+ G TP A +RGH + ++
Sbjct: 47 GLTPLHLAA-QLGHLEIVEVLLKYGADV------NAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 100 LKHGADVNAQDKFGKTAFDI 119
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G ++++ L V NA+D G TP D A GH ++
Sbjct: 101 GYTPLHLAA-REGHLEIVEVLLKAGADV------NAQDKFGKTPFDLAIREGHEDIAEVL 153
Query: 875 QK 876
QK
Sbjct: 154 QK 155
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA + G ++++ L + V NA D SGSTP A RGH + ++
Sbjct: 47 GDTPLHLAA-RVGHLEIVEVLLKNGADV------NALDFSGSTPLHLAAKRGHLEIVEVL 99
Query: 875 QK 876
K
Sbjct: 100 LK 101
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
+G TP+H+AA K G ++++ L V NA D+ GSTP A GH + +
Sbjct: 79 SGSTPLHLAA-KRGHLEIVEVLLKYGADV------NADDTIGSTPLHLAADTGHLEIVEV 131
Query: 874 VQK---KINKRPNGGHVVVDI 891
+ K +N + G DI
Sbjct: 132 LLKYGADVNAQDKFGKTAFDI 152
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 76/211 (36%), Gaps = 65/211 (30%)
Query: 780 FVPLEVSDRLGSENKALVDGVHKGFLFR---PDVIGPAGLTPIHIAAGKDGSEDVLDALT 836
F PL V+ + G A + L R P+ G GLTP+H+A + + D++ L
Sbjct: 147 FTPLHVAAKYGKVRVAEL------LLERDAHPNAAGKNGLTPLHVAVHHN-NLDIVKLLL 199
Query: 837 DDPGMVGIEAWK---------------------------NARDSSGSTPEDYARLRGHYS 869
G AW NA G TP A GH
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 870 YIHLVQKKINKRPNGG----------HVVVDICGVVPDSNIYQKQNNESTASFEIGQTPV 919
+ L+ ++K+ NG H+V G VP +++ K A+ +G TP+
Sbjct: 260 MVALL---LSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPL 315
Query: 920 RPTQH--NCKLC-----HQ-------KLGYA 936
H N KL HQ KLGY+
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYS 346
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA D E +++ L V NA D+ GSTP A L GH + ++
Sbjct: 47 GNTPLHLAADYDHLE-IVEVLLKHGADV------NAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 100 LKHGADVNAQDKFGKTAFDI 119
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
AG+TP+H+AA K G ++++ L V NARD G TP A GH + +
Sbjct: 46 AGVTPLHLAA-KRGHLEIVEVLLKHGADV------NARDIWGRTPLHLAATVGHLEIVEV 98
Query: 874 VQK---KINKRPNGGHVVVDI 891
+ + +N + G DI
Sbjct: 99 LLEYGADVNAQDKFGKTAFDI 119
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
AG+TP+H+AA K G ++++ L V NA DS G TP A GH + +
Sbjct: 46 AGVTPLHLAA-KRGHLEIVEVLLKHGADV------NASDSWGRTPLHLAATVGHLEIVEV 98
Query: 874 VQK---KINKRPNGGHVVVDI 891
+ + +N + G DI
Sbjct: 99 LLEYGADVNAQDKFGKTAFDI 119
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G ++++ L V NA+D G TP A GH + ++
Sbjct: 80 GYTPLHLAA-REGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 133 LKAGADVNAQDKFGKTAFDI 152
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G ++++ L V NA+D G TP A GH + ++
Sbjct: 47 GYTPLHLAA-REGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 875 QK---KINKRPNGGH 886
K +N + G+
Sbjct: 100 LKAGADVNAKDKDGY 114
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G ++++ L V NA+D G TP A GH + ++
Sbjct: 35 GYTPLHLAA-REGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 875 QK---KINKRPNGGHVVVDIC---GVVPDSNIYQKQNNESTASFEIGQTP 918
K +N + G+ + + G + + K + A + G+TP
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 808 PDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH 867
P+ G TP+H+AA ++G ++V+ L + A NA+DS G TP A GH
Sbjct: 63 PNAKDSDGKTPLHLAA-ENGHKEVVKLL------LSQGADPNAKDSDGKTPLHLAAENGH 115
Query: 868 YSYIHLV 874
+ L+
Sbjct: 116 KEVVKLL 122
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G ++V+ L + A NA+DS G TP A GH + L+
Sbjct: 37 GKTPLHLAA-ENGHKEVVKLL------LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
GLTP+H+AA D E +++ L + V NA D+ G TP + GH + ++
Sbjct: 47 GLTPLHLAAMNDHLE-IVEVLLKNGADV------NAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 100 LKHGADVNAQDKFGKTAFDI 119
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA G ++++ L + V NA+D +G TP A RGH + ++
Sbjct: 80 GSTPLHLAA-HFGHLEIVEVLLKNGADV------NAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 133 LKYGADVNAQDKFGKTAFDI 152
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA G ++++ L + V NA+DS G TP A RGH + ++
Sbjct: 47 GWTPLHLAA-HFGHLEIVEVLLKNGADV------NAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 875 QK 876
K
Sbjct: 100 LK 101
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
+GLTP+H+AA G ++++ L V NA D GSTP A L GH + +
Sbjct: 46 SGLTPLHLAATY-GHLEIVEVLLKHGADV------NAIDIXGSTPLHLAALIGHLEIVEV 98
Query: 874 VQK 876
+ K
Sbjct: 99 LLK 101
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
+GLTP+H+AA G ++++ L V NA D GSTP A L GH + +
Sbjct: 46 SGLTPLHLAATY-GHLEIVEVLLKHGADV------NAIDIMGSTPLHLAALIGHLEIVEV 98
Query: 874 VQK 876
+ K
Sbjct: 99 LLK 101
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
+G TP+H+AA K G ++++ L V NA D G TP A L GH + +
Sbjct: 46 SGKTPLHLAAIK-GHLEIVEVLLKHGADV------NAADKMGDTPLHLAALYGHLEIVEV 98
Query: 874 VQKKINKRPNGGHV-VVDICGVVP 896
+ K NG V D G P
Sbjct: 99 LLK------NGADVNATDTYGFTP 116
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 808 PDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH 867
P+V +G +P+H AA + G D L L + V NA DS+GS P A GH
Sbjct: 67 PNVQDASGTSPVHDAA-RTGFLDTLKVLVEHGADV------NALDSTGSLPIHLAIREGH 119
Query: 868 YSYI 871
S +
Sbjct: 120 SSVV 123
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H AA ++G ++V+ L V NA+DS G TP +A GH + L+
Sbjct: 70 GRTPLHHAA-ENGHKEVVKLLISKGADV------NAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 875 QKK---INKRPNGGHVVVDIC 892
K +N + G +D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDLA 143
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H AA ++G ++V+ L V NA+DS G TP +A GH + L+
Sbjct: 37 GRTPLHHAA-ENGHKEVVKLLISKGADV------NAKDSDGRTPLHHAAENGHKEVVKLL 89
Query: 875 QKK 877
K
Sbjct: 90 ISK 92
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 808 PDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGH 867
P+V +G +P+H AA + G D L L + V NA DS+GS P A GH
Sbjct: 69 PNVQDASGTSPVHDAA-RTGFLDTLKVLVEHGADV------NALDSTGSLPIHLAIREGH 121
Query: 868 YSYI 871
S +
Sbjct: 122 SSVV 125
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G +V+ L + V NA+D +G TP A GH + L+
Sbjct: 2 GRTPLHLAA-RNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G +V+ L + V NA+D +G TP A GH + L+
Sbjct: 35 GRTPLHLAA-RNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G +V+ L + V NA+D +G TP A GH + L+
Sbjct: 2 GRTPLHLAA-RNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA ++G +V+ L + V NA+D +G TP A GH + L+
Sbjct: 68 GRTPLHLAA-RNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLL 120
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA +G ++++ L V NA+D+ G TP A RGH + ++
Sbjct: 80 GWTPLHLAA-DNGHLEIVEVLLKYGADV------NAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 133 LKHGADVNAQDKFGKTAFDI 152
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G+TP+H+AA + G +V++ L + V NA D +G TP A GH + ++
Sbjct: 80 GVTPLHLAADR-GHLEVVEVLLKNGADV------NANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 133 LKHGADVNAQDKFGKTAFDI 152
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA +G ++++ L V NA+D G TP A GH + ++
Sbjct: 80 GATPLHLAA-DNGHLEIVEVLLKHGADV------NAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 133 LKYGADVNAQDKFGKTAFDI 152
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G+TP+H+AA G ++++ L V NA D+ G TP A GH + ++
Sbjct: 80 GITPLHLAAAT-GHLEIVEVLLKHGADV------NAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 133 LKHGADVNAQDKFGKTAFDI 152
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 815 GLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 874
G TP+H+AA G ++++ L V NA D +GSTP A GH + ++
Sbjct: 80 GFTPLHLAA-MTGHLEIVEVLLKYGADV------NAFDMTGSTPLHLAADEGHLEIVEVL 132
Query: 875 QK---KINKRPNGGHVVVDI 891
K +N + G DI
Sbjct: 133 LKYGADVNAQDKFGKTAFDI 152
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 776 LLLRFVPLEVSDRLGSENKALVDGVHKGFL--------FRPDVI--GPAGLTPIHIAAGK 825
LLLR ++ DR G N + D GFL F+ DV G P+H+AA K
Sbjct: 56 LLLRGANPDLKDRTG--NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-K 112
Query: 826 DGSEDVLDALTDDPGM-VGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 875
+G V++ L VG R+ G T D ARL G + L+Q
Sbjct: 113 EGHLRVVEFLVKHTASNVG------HRNHKGDTACDLARLYGRNEVVSLMQ 157
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 814 AGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 873
AG+TP+H+AA K G ++++ L V NA D G TP A GH + +
Sbjct: 46 AGVTPLHLAA-KRGHLEIVEVLLKHGADV------NASDIWGRTPLHLAATVGHLEIVEV 98
Query: 874 VQK---KINKRPNGGHVVVDI 891
+ + +N + G DI
Sbjct: 99 LLEYGADVNAQDKFGKTAFDI 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,103,756
Number of Sequences: 62578
Number of extensions: 1130026
Number of successful extensions: 2290
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2244
Number of HSP's gapped (non-prelim): 72
length of query: 988
length of database: 14,973,337
effective HSP length: 108
effective length of query: 880
effective length of database: 8,214,913
effective search space: 7229123440
effective search space used: 7229123440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)