BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001972
(988 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 599 VWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 658
V + E G PN D G+ +H AA G++ ++ +++ G PN +D+ GRT LH+A+
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 79
Query: 659 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
G +E V +L+ GA DP G+T A+ GHK I L
Sbjct: 80 NGHKEIVKLLLSKGA------DPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G PN D G+ +H AA G++ ++ +++ G PN +D+ GRT LH+A+ G +E V
Sbjct: 60 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+ GA DP + G+T DLA G++ I L
Sbjct: 120 KLLLSKGA------DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G PN D G+ +H AA G++ ++ +++ G PN D+ GRT L A G EE V
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Query: 666 IMLVKLGA 673
+L K G
Sbjct: 153 KLLEKQGG 160
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + ++ ++ G PN D+ GRT LH+A+ G +E V +L+ GA DP
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA------DPN 64
Query: 683 PAFPGGQTAADLASSRGHKGIAGYL 707
G+T A+ GHK I L
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLL 89
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 412 IRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS 471
+ D+SP+W+Y KVLI G + + + C+F +I VPA ++ V+RC P+
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPWQ-----EASNNYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 472 HAAGRVPFYITGSNRLACSEVREFEYREKPS 502
H G V + +N++ + V FEY+ PS
Sbjct: 64 HDTGLVTLQVAFNNQIISNSV-VFEYKSGPS 93
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G PN D G+ +HLAA G++ ++ +++ G PN +D+ G+T LH A+ G +E V
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+ GA DP + G+T DLA G++ + L
Sbjct: 120 KLLLSQGA------DPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 599 VWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 658
V + E G N D G+ +HLAA G++ ++ +++ G PN +D+ G+T LH A+
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE 79
Query: 659 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
G +E V +L+ GA DP G+T LA+ GHK + L
Sbjct: 80 NGHKEVVKLLLSQGA------DPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G PN D G+ +HLAA G++ ++ +++ G PN D+ GRT L A G EE V
Sbjct: 93 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVV 152
Query: 666 IMLVKLGA 673
+L K G
Sbjct: 153 KLLEKQGG 160
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + ++ ++ G N D+ G+T LH A+ G +E V +L+ GA DP
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA------DPN 64
Query: 683 PAFPGGQTAADLASSRGHKGIAGYL 707
G+T LA+ GHK + L
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLL 89
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 599 VWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 658
V + E G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH+A+
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 79
Query: 659 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
G +E V +L+ GA D G+T A+ GHK I L
Sbjct: 80 EGHKEIVKLLISKGA------DVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH+A+ G +E V
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+ GA D + G+T DLA G++ I L
Sbjct: 120 KLLISKGA------DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + ++ +I G N D+ GRT LH+A+ G +E V +L+ GA D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA------DVN 64
Query: 683 PAFPGGQTAADLASSRGHKGIAGYL 707
G+T A+ GHK I L
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLL 89
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G+ +H AA G++ ++ +I+ G N D+ GRT L A G EE V
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIV 152
Query: 666 IMLVKLGA 673
+L K G
Sbjct: 153 KLLEKQGG 160
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
E G N D G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
V +L++ GA A + G+T LA+ GH + L EA
Sbjct: 83 VVKLLLEAGADVNAKDK------NGRTPLHLAARNGHLEVVKLLLEA 123
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675
G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E V +L++ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 676 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
A + G+T LA+ GH + L EA
Sbjct: 62 NAKDK------NGRTPLHLAARNGHLEVVKLLLEA 90
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
E G N D G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 664 TVIMLVKLGA 673
V +L++ GA
Sbjct: 116 VVKLLLEAGA 125
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
E G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH A+ G +E
Sbjct: 25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+ GA D G+T A+ GHK + L
Sbjct: 85 VVKLLISKGA------DVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G+ +H AA G++ ++ +I+ G N +D+ GRT LH A+ G +E V
Sbjct: 60 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+ GA D + G+T DLA G++ + L
Sbjct: 120 KLLISKGA------DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G+ +H AA G++ ++ +I+ G N D+ GRT L A G EE V
Sbjct: 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVV 152
Query: 666 IMLVKLGA 673
+L K G
Sbjct: 153 KLLEKQGG 160
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + ++ +I G N D+ GRT LH A+ G +E V +L+ GA D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA------DVN 64
Query: 683 PAFPGGQTAADLASSRGHKGIAGYL 707
G+T A+ GHK + L
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 584 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPN 643
++++ LLRN G N +D G +HLAA+LG+ + ++ G N
Sbjct: 49 EIVEVLLRN-------------GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 644 FRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGI 703
+DA G T L+ A+Y+G E V +L+K GA A + G+TA D++ G++ +
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK------FGKTAFDISIDIGNEDL 149
Query: 704 AGYL 707
A L
Sbjct: 150 AEIL 153
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G+ +H+AAA+G+ + ++ G N D G T LH A+ G E V
Sbjct: 25 GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIV 84
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A +D T G T LA+ GH
Sbjct: 85 EVLLKYGADVNA-KDAT-----GITPLYLAAYWGH 113
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N D GRT LH A+ G E V +L++ GA AV+
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT-- 66
Query: 683 PAFPGGQTAADLASSRGH 700
G T LA+S GH
Sbjct: 67 ----NGTTPLHLAASLGH 80
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N +DD G +HLAA G+ + ++ G N RD GRT LH A+ G E V
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L++ GA A + G+TA D++ G++ +A L
Sbjct: 97 EVLLEYGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 132
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N D G T LH A++FG E V
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A +D G T LA++RGH
Sbjct: 97 EVLLKNGADVNAKDD------NGITPLHLAANRGH 125
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 68 KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A + G+TA D++ + G++ +A L
Sbjct: 128 IVEVLLKYGADVNAQDK------FGKTAFDISINNGNEDLAEIL 165
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N D G T LH A+Y+G E V +L+K GA A +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL- 79
Query: 683 PAFPGGQTAADLASSRGH 700
G T LA+ GH
Sbjct: 80 -----GSTPLHLAAHFGH 92
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N DD G +HLAA G+ + ++ G N +D G+TA + G E+
Sbjct: 101 KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 664 TVIMLVKL 671
+L KL
Sbjct: 161 LAEILQKL 168
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N +DD G +HLAA G+ + ++ G N D+ GRT LH A+ G E V
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L++ GA A + G+TA D++ G++ +A L
Sbjct: 97 EVLLEYGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G+ +HLAA +G+ + ++ G N +D G+TA + G E+
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 666 IMLVKL 671
+L KL
Sbjct: 130 EILQKL 135
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675
G +H+AAA GY ++ +I N +D G T LH A+++G+EE +LV+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE----- 253
Query: 676 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 709
+ D GQTA D+A + I GYL E
Sbjct: 254 -NLCDMEAVNKVGQTAFDVAD----EDILGYLEE 282
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
V +L+K GA A + G+T DLA GH+ IA L +A
Sbjct: 116 IVEVLLKAGADVNAQDK------FGKTPFDLAIREGHEDIAEVLQKA 156
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N +D G T LH A+ G E V
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
+L+K GA A + G T LA+ GH I L +A
Sbjct: 85 EVLLKAGADVNAKDK------DGYTPLHLAAREGHLEIVEVLLKA 123
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N DD G +HLAA +G+ + ++ G N RD G T LH A+ G E V
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A + A+ G T LA+ RGH
Sbjct: 97 EVLLKYGADVNAQD----AY--GLTPLHLAADRGH 125
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N +DA G T LH A+ G E V
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIV 129
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 130 EVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N +D G + LAA G+ + ++ G N D G T LH A+ FG E
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A + G+TA D++ G++ +A L
Sbjct: 128 IVEVLLKNGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N D G T L A+ FG E V
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A + G T LA+ GH
Sbjct: 97 EVLLKNGADVNANDME------GHTPLHLAAMFGH 125
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N +DD G +HLAA G+ + ++ G N D GRT LH A+ G E V
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L++ GA A + G+TA D++ G++ +A L
Sbjct: 97 EVLLEYGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 132
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675
G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E V +L++ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 676 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
A + G+T LA+ GH + L EA
Sbjct: 62 NAKDK------NGRTPLHLAARNGHLEVVKLLLEA 90
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
E G N D G+ +HLAA G+ ++ ++ G N +D GRT LH A+ G E
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 664 TVIMLVKLGA 673
V +L++ GA
Sbjct: 83 VVKLLLEAGA 92
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 821 DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVR 863
D L A I+IQ+ RGW RK ++++R + +Q +VRGHQ R
Sbjct: 765 DKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 826 AAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVV 870
AAI IQ+ R + RK + +R+ + LQA +RG+ VR +Y+ ++
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML 862
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
DD G +H+AA+ G + ++ ++ G N + G T LH+A+ R E +ML++ G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 673 AAPGA 677
A P A
Sbjct: 130 ANPDA 134
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
EGG P+ D +H AAA G + ++ S N +D G T LH A R E
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 664 TVIMLVKLGAA 674
LV GA+
Sbjct: 187 EAKFLVTQGAS 197
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 646 DARGRTALHWASYFGREETVIMLVKLG 672
D RTALHWA G E V L++LG
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG 63
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
DD G +H+AA+ G + ++ ++ G N + G T LH+A+ R E +ML++ G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 673 AAPGA 677
A P A
Sbjct: 131 ANPDA 135
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
EGG P+ D +H AAA G + ++ S N +D G T LH A R E
Sbjct: 128 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 187
Query: 664 TVIMLVKLGAA 674
+LV GA+
Sbjct: 188 EAKLLVSQGAS 198
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
D + +H A + G+ + ++ GV N +D G + LH A+ GR+E V L+ G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 673 AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 709
A AV G T A+S+ IA L E
Sbjct: 98 AQVNAVNQ------NGCTPLHYAASKNRHEIAVMLLE 128
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 619 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
V +LA + E I+A D RTALHWA G E V L++LG
Sbjct: 11 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 64
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
DD G +H+AA+ G + ++ ++ G N + G T LH+A+ R E +ML++ G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 673 AAPGA 677
A P A
Sbjct: 130 ANPDA 134
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
EGG P+ D +H AAA G + ++ S N +D G T LH A R E
Sbjct: 127 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 664 TVIMLVKLGAA 674
+LV GA+
Sbjct: 187 EAKLLVSQGAS 197
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
D + +H A + G+ + ++ GV N +D G + LH A+ GR+E V L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 673 AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 709
A AV G T A+S+ IA L E
Sbjct: 97 AQVNAVNQ------NGCTPLHYAASKNRHEIAVMLLE 127
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 619 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
V +LA + E I+A D RTALHWA G E V L++LG
Sbjct: 10 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
DD G +H+AA+ G + ++ ++ G N + G T LH+A+ R E +ML++ G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 673 AAPGA 677
A P A
Sbjct: 130 ANPDA 134
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
EGG P+ D +H AAA G + ++ S N +D G T LH A R E
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 664 TVIMLVKLGAA 674
LV GA+
Sbjct: 187 EAKFLVTQGAS 197
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
D + +H A + G+ + ++ GV N +D G + LH A+ GR+E V L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 673 AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 709
A AV G T A+S+ IA L E
Sbjct: 97 AHVNAVNQ------NGCTPLHYAASKNRHEIAVMLLE 127
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N ID G +HLAA +G+ + ++ G N D G T LH A+ G E V
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 130 EVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N D G T LH A+ G E V
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA AV+ G T LA+ GH
Sbjct: 97 EVLLKHGADVNAVDT------WGDTPLHLAAIMGH 125
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N +D G +HLAA +G+ + ++ G N +D G+TA + G E+
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 666 IMLVKL 671
+L KL
Sbjct: 163 EILQKL 168
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 115
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
V +L+K GA A + G+T DLA G++ IA L +A
Sbjct: 116 IVEVLLKAGADVNAQDK------FGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N +D G T LH A+ G E V
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
+L+K GA A + G T LA+ GH I L +A
Sbjct: 85 EVLLKAGADVNAKDK------DGYTPLHLAAREGHLEIVEVLLKA 123
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N DD G+ +HLAA G+ + ++ G N D G T LH A+ +G E V
Sbjct: 37 GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A + G T LA+ GH
Sbjct: 97 EVLLKNGADVNATDTY------GFTPLHLAADAGH 125
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N D G T LH A+ G E V
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 130 EVLLKYGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N D G+T LH A+ G E V +L+K GA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA------DVN 74
Query: 683 PAFPGGQTAADLASSRGH 700
A G T LA+ GH
Sbjct: 75 AADKMGDTPLHLAALYGH 92
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D+ G +HLAA G+ + ++ G N +D G T LH A+Y G E V
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 130 EVLLKYGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N D G T LH A+ G E V +L+K GA A ++
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY- 79
Query: 683 PAFPGGQTAADLASSRGH 700
G T LA+ GH
Sbjct: 80 -----GATPLHLAADNGH 92
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N D G T LH A+ G E V
Sbjct: 37 GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A + G T LA+ GH
Sbjct: 97 EVLLKHGADVNAKDYE------GFTPLHLAAYDGH 125
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N +D+ G +HLAA LG+ + ++ G N D G T LH A+ G E V
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 97 EVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N DD G +HLAAA G + ++ G N D+ G T LH A+Y G E V
Sbjct: 29 GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIV 88
Query: 666 IMLVKLGA 673
+L+K GA
Sbjct: 89 EVLLKHGA 96
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAA G+ + ++ G N D G T LH A+ G+ E
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A +D G TA D++ ++G + +A L
Sbjct: 120 IVEVLLKHGADVNA-QDAL-----GLTAFDISINQGQEDLAEIL 157
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AAA G + +R ++A G N D G T LH A+ G+ E V +L+K GA D
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA------DVN 66
Query: 683 PAFPGGQTAADLASSRGHKGIAGYLAE--ADLSSH 715
+ G T LA+ GH I L + AD++++
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N ID G +HLAA +G+ + ++ G N D G T LH A+ G E V
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 130 EVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N D G T LH A+ G E V
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA AV+ G T LA+ GH
Sbjct: 97 EVLLKHGADVNAVDT------WGDTPLHLAAIMGH 125
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N +D G +HLAA +G+ + ++ G N +D G+TA + G E+
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 666 IMLVKL 671
+L KL
Sbjct: 163 EILQKL 168
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
DD +H+AA G +R +I TGVSP ++ G TALH A FG +T L +G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 640 VSPNFRDARGRTALHWASYFGRE--ETVIMLVKLGAAPGAVE--DPTP 683
+ + + +G+TALHW G E E + +LV+LGA+P A + D TP
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETP 176
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 643 NFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKG 702
N D RG T L WAS FG ETV L++ GA DP ++A LAS+ G+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGA------DPHILAKERESALSLASTGGYTD 83
Query: 703 IAGYLAEADLSSHL 716
I G L E D+ ++
Sbjct: 84 IVGLLLERDVDINI 97
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N RD G T LH A++FG E V +L+K GA A +
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL- 79
Query: 683 PAFPGGQTAADLASSRGH 700
G T LA+ RGH
Sbjct: 80 -----GVTPLHLAARRGH 92
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N +D+ G T LH A+ G E V
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA D + G T LA+ RGH
Sbjct: 97 EVLLKNGA------DVNASDSHGFTPLHLAAKRGH 125
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAA G+ + ++ G N D+ G T LH A+ G E
Sbjct: 68 KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A + G+TA D++ G++ +A L
Sbjct: 128 IVEVLLKNGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 643 NFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKG 702
N D RG T L WAS FG ETV L++ GA DP ++A LAS+ G+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGA------DPHILAKERESALSLASTGGYTD 83
Query: 703 IAGYLAEADLSSHL 716
I G L E D+ ++
Sbjct: 84 IVGLLLERDVDINI 97
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D+ G +HLAA+ G+ + ++ G N D G T LH A+ G E V
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A ++ G T LA+ GH
Sbjct: 97 EVLLKHGADVNAYDN------DGHTPLHLAAKYGH 125
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAAA G+ + ++ G N D G T LH A+ +G E
Sbjct: 68 KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A + G+TA D++ G++ +A L
Sbjct: 128 IVEVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N D G T LH A+YFG E V +L+K GA A +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL- 79
Query: 683 PAFPGGQTAADLASSRGH 700
G T LA+ RGH
Sbjct: 80 -----GVTPLHLAADRGH 92
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAA G+ + ++ G N D G T LH A+ G E
Sbjct: 68 KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A + G+TA D++ G++ +A L
Sbjct: 128 IVEVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 36.2 bits (82), Expect = 0.087, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N D+ G T LH A+ G E V
Sbjct: 37 GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A + G T LA++ GH
Sbjct: 97 EVLLKNGADVNANDH------NGFTPLHLAANIGH 125
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 598 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 657
+V ++ + G P++ID G +HLAA G+ + +IA G + D G T L WA+
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150
Query: 658 Y 658
Y
Sbjct: 151 Y 151
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 651 TALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
T LHWA+ G V+ L+K GA P ++ G + LA+ GH I YL
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGE------GCSCIHLAAQFGHTSIVAYL 128
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVE 679
+H+AA+ G+ + ++ G N +D TALHWA+ +E V +L+K GA
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA------ 124
Query: 680 DPTPAFPGGQTAADLASSRGHKGIAGYL 707
D +TA D++ G++ +A L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 608 GPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIM 667
P D G +HLAA G+ ++ GVS + R RT LH A+ G V +
Sbjct: 26 APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 668 LVKLGA 673
L+K GA
Sbjct: 86 LLKHGA 91
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N +D G +HLAA G+ + ++ G N D G T LH A+ G E
Sbjct: 68 KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLE 127
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A + G+TA D++ G++ +A L
Sbjct: 128 IVEVLLKYGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA +G+ + ++ G N D G T LH A+ G E V
Sbjct: 37 GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A D T G T LA+ GH
Sbjct: 97 EVLLKYGADVNA--DDTI----GSTPLHLAADTGH 125
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N +D+ G +HLAA G+ + ++ G + D G T LH A+ G E V
Sbjct: 37 GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A D T G T LA+ GH
Sbjct: 97 EVLLKYGADVNAF-DMT-----GSTPLHLAADEGH 125
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVE 679
+HLAA G+ + ++ G N D G T LH A+ G E V +L+K GA A +
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 680 DPTPAFPGGQTAADLASSRGHKGIA 704
G+TA D++ G++ +A
Sbjct: 144 K------FGKTAFDISIDNGNEDLA 162
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA G+ + ++ G N +D G T LH A+ G E V
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
+L+K GA A + G T LA+ GH I L +A
Sbjct: 97 EVLLKAGADVNAKDK------DGYTPLHLAAREGHLEIVEVLLKA 135
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N D G +HLAA G+ + ++ G N +D G T LH A+ G E
Sbjct: 68 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 127
Query: 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
V +L+K GA A + G+TA D++ G++ +A L
Sbjct: 128 IVEVLLKAGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D+ G +HLAA G+ + ++ G + D G T LH A+Y+G E V
Sbjct: 37 GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A++ G T LA+ G+
Sbjct: 97 EVLLKNGADVNAMDS------DGMTPLHLAAKWGY 125
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675
G +HLAA G+ + ++ G N D+ G T LH A+ +G E V +L+K GA
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 676 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
A + G+TA D++ G++ +A L
Sbjct: 140 NAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N D G T LH A+Y G E V +L+K GA D +
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV----DAS 76
Query: 683 PAFPGGQTAADLASSRGH 700
F G T LA+ GH
Sbjct: 77 DVF--GYTPLHLAAYWGH 92
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N +D G +HLAA GY + ++ G N +D G+TA + G E+
Sbjct: 101 KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 664 TVIMLVKL 671
+L KL
Sbjct: 161 LAEILQKL 168
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 821 DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVR 863
D L A I+IQ+ RGW RK +L ++ + +Q +VRG+Q R
Sbjct: 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA + + ++ G N D G T LH A+ FG E V
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 97 EVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 132
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682
AA G + +R ++A G N D +G T LH A+ + E V +L+K GA A ++
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN-- 78
Query: 683 PAFPGGQTAADLASSRGH 700
G T LA+ GH
Sbjct: 79 ----DGSTPLHLAALFGH 92
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D+ G +HLAA G+ + ++ G N +D G+TA + G E+
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 666 IMLVKL 671
+L KL
Sbjct: 130 EILQKL 135
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 610 NVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG-RTALHWASYFGREETVIML 668
+ +D+ G+ + A LG + +R + G + RD RG TALH A+ + R E V L
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 669 VKLGA 673
V+LGA
Sbjct: 130 VELGA 134
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 610 NVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG-RTALHWASYFGREETVIML 668
+ +D+ G+ + A LG + +R + G + RD RG TALH A+ + R E V L
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 669 VKLGA 673
V+LGA
Sbjct: 131 VELGA 135
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA LG+ + ++ G N GRT LH A++ E V
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 97 EVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 132
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 623 AAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGA 673
AA G + +R + A G N D G T LH A+ G E V +L+K GA
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 585 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF 644
+ Q LLRNR L ++H+G P + LAA L E + +I N
Sbjct: 99 VFQILLRNRATN-LNARMHDGTT-PLI----------LAARLAIEGMVEDLITADADINA 146
Query: 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDP--TPAFPGGQTAADLASSRGHKG 702
D G+TALHWA+ E V +L+ A A +D TP F AA S K
Sbjct: 147 ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF----LAAREGSYEASKA 202
Query: 703 IAGYLAEADLSSHLSSL 719
+ A +++ H+ L
Sbjct: 203 LLDNFANREITDHMDRL 219
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 635 IIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADL 694
++ G SPN +DA G + +H A+ G +T+ +LV+ GA A+ D T + P L
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLP-----IHL 113
Query: 695 ASSRGHKGIAGYLA-EADL 712
A GH + +LA E+DL
Sbjct: 114 AIREGHSSVVSFLAPESDL 132
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 610 NVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLV 669
N D G +HLAA G+ + ++ G N D +G T LH A+ G E V +L+
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 670 KLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
K GA A + G+TA D++ G++ +A L
Sbjct: 134 KYGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 165
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HL G+ + ++ N D G T LH A+Y G E V
Sbjct: 37 GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
+L+K GA A++ G T LA+ GH
Sbjct: 97 EVLLKYGADVNAMDYQ------GYTPLHLAAEDGH 125
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 635 IIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADL 694
++ G SPN +DA G + +H A+ G +T+ +LV+ GA A+ D T + P L
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLP-----IHL 115
Query: 695 ASSRGHKGIAGYLA-EADL 712
A GH + +LA E+DL
Sbjct: 116 AIREGHSSVVSFLAPESDL 134
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 619 VVHLAAALGYEWAMRP---IIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675
V+HLA + + ++ II G + + A G TALH+A+ + + + + +L+K A
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 676 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVN 722
G V + G+TA D+A + HK L +A + L V+
Sbjct: 234 GTVNE------AGETALDIARKKHHKECEELLEQAQAGTFAFPLHVD 274
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 619 VVHLAAALGYEWAMRP---IIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675
V+HLA + + ++ II G + + A G TALH+A+ + + + + +L+K A
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 676 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVN 722
G V + G+TA D+A + HK L +A + L V+
Sbjct: 253 GTVNE------AGETALDIARKKHHKECEELLEQAQAGTFAFPLHVD 293
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G N D G +HLAA + + ++ G N DA G T LH + +G E V
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIV 96
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
+L+K GA A + G+TA D++ G++ +A L
Sbjct: 97 EVLLKHGADVNAQDK------FGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 604 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663
+ G N ID G+ +HL A G+ + ++ G N +D G+TA + G E+
Sbjct: 68 KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 664 TVIMLVKL 671
+L KL
Sbjct: 128 LAEILQKL 135
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675
G +H AA G+ ++ +++ G N R G T LH A+ G E V +L+ GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-- 66
Query: 676 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
D G T LA GH I L
Sbjct: 67 ----DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGA 673
G +HLAA G+ ++ ++A G N R G T H A G E V +L GA
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 580 NSRDKLIQNL--LRNRLCEW---LVW-----------KIHEGGKGPNVIDDGGQGVVHLA 623
N+ DKL++N L ++ E L+W K+ G N D G+ + +
Sbjct: 49 NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108
Query: 624 AALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGA 677
GY ++ G + N R+ G T L AS +GR E V L++LGA A
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 598 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 657
LV +I P++ +D G +H A G+ ++ ++ GV+ N D+ G T LH A+
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 658 YFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAAD 693
+ LV+ GAA A+ + QTAAD
Sbjct: 112 SCNNVQVCKFLVESGAAVFAM-----TYSDMQTAAD 142
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 598 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 657
LV +I P++ +D G +H A G+ ++ ++ GV+ N D+ G T LH A+
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 658 YFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAAD 693
+ LV+ GAA A+ + QTAAD
Sbjct: 112 SCNNVQVCKFLVESGAAVFAM-----TYSDMQTAAD 142
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 585 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF 644
+ Q LLRNR + L ++H+G P + LAA L E + +I + N
Sbjct: 70 VFQILLRNRATD-LDARMHDGTT-PLI----------LAARLALEGMLEDLINSHADVNA 117
Query: 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAV--EDPTPAFPGGQTAADLASSRGHKG 702
D G++ALHWA+ + ++L+K GA ++ TP F AA S K
Sbjct: 118 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLF----LAAREGSYETAKV 173
Query: 703 IAGYLAEADLSSHLSSL 719
+ + A D++ H+ L
Sbjct: 174 LLDHFANRDITDHMDRL 190
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 602 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 656
I++G N D G+ +HLAA A + ++ +D GRT LH A
Sbjct: 8 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 617 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVK 670
Q +H AA +G+ ++ ++ +PN G T LH A+ G ETV+ L++
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 598 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 657
+V + + G PNV + + +H+AA G+ + ++ N + +T LH A+
Sbjct: 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Query: 658 YFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH 700
G V +L++ A +P A G T +A+ GH
Sbjct: 89 RIGHTNMVKLLLENNA------NPNLATTAGHTPLHIAAREGH 125
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGA-V 678
+H+A+ +G+ ++ ++ G SPN + + T LH A+ G E L++ A A
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 679 EDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSS 718
+D QT A+ GH + L E + + +L++
Sbjct: 78 KD-------DQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 598 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 657
+V + E PN+ G +H+AA G+ + ++ S +G T LH A+
Sbjct: 95 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA 154
Query: 658 YFGREETVIMLVKLGAAPGA 677
+G+ +L++ A P A
Sbjct: 155 KYGKVRVAELLLERDAHPNA 174
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 646 DARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAG 705
D G + LHWA GR V ML+ GA + G T LA+S GH+ I
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMN------RGDDTPLHLAASHGHRDIVQ 84
Query: 706 YLAE--ADLSSHLSSLTVNENG 725
L + AD+++ VNE+G
Sbjct: 85 KLLQYKADINA------VNEHG 100
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G NV++ G +HLAA+ G+ ++ ++ N + G LH+A ++G+++
Sbjct: 57 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 116
Query: 666 IMLVKLGA 673
LV GA
Sbjct: 117 EDLVANGA 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G P++ D G V+H AA G+ ++ ++ N D G LH A+ G V
Sbjct: 60 GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
LVK A+ + G TA DLA G + +
Sbjct: 120 EFLVKHTASNVGHRNHK-----GDTACDLARLYGRNEVVSLM 156
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 646 DARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAG 705
D G + LHWA GR V ML+ GA + G T LA+S GH+ I
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMN------RGDDTPLHLAASHGHRDIVQ 89
Query: 706 YLAE--ADLSSHLSSLTVNENG 725
L + AD+++ VNE+G
Sbjct: 90 KLLQYKADINA------VNEHG 105
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 591 RNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR 650
R+ + E L+ + G NV++ G +HLAA+ G+ ++ ++ N + G
Sbjct: 51 RSAVVEMLIMR----GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 651 TALHWASYFGREETVIMLVKLGA 673
LH+A ++G+++ LV GA
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGA 129
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 585 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF 644
+ Q L+RNR + L ++H+G P + LAA L E + +I + N
Sbjct: 73 VFQILIRNRATD-LDARMHDGTT-PLI----------LAARLAVEGMLEDLINSHADVNA 120
Query: 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAVE--DPTPAFPGGQTAADLASSRGHKG 702
D G++ALHWA+ + ++L+K GA + TP F AA S K
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF----LAAREGSYETAKV 176
Query: 703 IAGYLAEADLSSHLSSL 719
+ + A D++ H+ L
Sbjct: 177 LLDHFANRDITDHMDRL 193
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 602 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 656
I++G N D G+ +HLAA A + ++ N +D GRT LH A
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G P++ D G V+H AA G+ ++ ++ N D G LH A+ G V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
LVK A+ + G TA DLA G + +
Sbjct: 120 EFLVKHTASNVGHRNHK-----GDTACDLARLYGRNEVVSLM 156
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 617 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG 676
Q +HLA ++ G P RD RG T LH A G +V +L + P
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 677 AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE--ADLSSH 715
G T LAS G+ GI L AD+++
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRD-ARGRTALHWASYFGREETVIMLVKLGA 673
G +HLA+ GY + +++ G N ++ GRTALH A + V +L+K GA
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 172
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 585 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF 644
+ Q L+RNR + L ++H+G P + LAA L E + +I + N
Sbjct: 105 VFQILIRNRATD-LDARMHDGTT-PLI----------LAARLAVEGMLEDLINSHADVNA 152
Query: 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAVE--DPTPAFPGGQTAADLASSRGHKG 702
D G++ALHWA+ + ++L+K GA + TP F AA S K
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF----LAAREGSYETAKV 208
Query: 703 IAGYLAEADLSSHLSSL 719
+ + A D++ H+ L
Sbjct: 209 LLDHFANRDITDHMDRL 225
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 602 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 656
I++G N D G+ +HLAA A + ++ N +D GRT LH A
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 598 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 657
LV +GG+ ++ ++ Q +HLA +R ++ G SP D G+TA H A
Sbjct: 28 LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87
Query: 658 YFGREETVIMLVKLGAAPGAVE 679
R T + + AAPG ++
Sbjct: 88 EH-RSPTCLRALLDSAAPGTLD 108
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 605 GGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF----RDARGRTALHWASYFG 660
G P +D GQ HLA +R ++ + R+ G TALH A
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 661 REETVIMLVKLGAAPGAVE 679
+ETV +L++ GA AV+
Sbjct: 128 CQETVQLLLERGADIDAVD 146
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 585 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF 644
+ Q L+RNR + L ++H+G P + LAA L E + +I + N
Sbjct: 106 VFQILIRNRATD-LDARMHDGTT-PLI----------LAARLAVEGMLEDLINSHADVNA 153
Query: 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAVE--DPTPAFPGGQTAADLASSRGHKG 702
D G++ALHWA+ + ++L+K GA + TP F AA S K
Sbjct: 154 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF----LAAREGSYETAKV 209
Query: 703 IAGYLAEADLSSHLSSL 719
+ + A D++ H+ L
Sbjct: 210 LLDHFANRDITDHMDRL 226
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 602 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 656
I++G N D G+ +HLAA A + ++ N +D GRT LH A
Sbjct: 44 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 617 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG 676
Q +HLA ++ G P RD RG T LH A G +V +L + P
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 677 AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE--ADLSSH 715
G T LAS G+ GI L AD+++
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRD-ARGRTALHWASYFGREETVIMLVKLGA 673
G +HLA+ GY + +++ G N ++ GRTALH A + V +L+K GA
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 591 RNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR 650
R ++ E L+ K G N + +H+AA + M + G N D+ G+
Sbjct: 226 RKQVAELLLRK----GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ 281
Query: 651 TALHWASYFGREETVIMLVKLGAAPGAV 678
TALH A+ G +T +L+ G+ P +
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDPSII 309
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 591 RNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR 650
R R+ + L+ + G + D GG +H A + G+ ++ G N D
Sbjct: 70 RVRIVQLLL----QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125
Query: 651 TALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS 697
T LH A+ R E +L+ GA DPT G++A D+A +
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGA------DPTLVNCHGKSAVDMAPT 166
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 585 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF 644
+ Q L+RNR + L ++H+G P + LAA L E + +I + N
Sbjct: 105 VFQILIRNRATD-LDARMHDGTT-PLI----------LAARLAVEGMLEDLINSHADVNA 152
Query: 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAVE--DPTPAFPGGQTAADLASSRGHKG 702
D G++ALHWA+ + ++L+K GA + TP F AA S K
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF----LAAREGSYETAKV 208
Query: 703 IAGYLAEADLSSHLSSL 719
+ + A D++ H+ L
Sbjct: 209 LLDHFANRDITDHMDRL 225
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 602 IHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 656
I++G N D G +HLAAA A + ++ N +D GRT LH A
Sbjct: 43 IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G P++ D G V+H AA G+ ++ ++ N D G LH A+ G V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
LVK A+ + G TA DLA G + +
Sbjct: 120 EFLVKHTASNVGHRNHK-----GDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G P++ D G V+H AA G+ ++ ++ N D G LH A+ G V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
LVK A+ + G TA DLA G + +
Sbjct: 120 EFLVKHTASNVGHRNHK-----GDTACDLARLYGRNEVVSLM 156
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGA 677
+HLA G+ ++ ++ + PN +D G T L +A G E V +L++ GA+ A
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 599 VWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRT-ALHWAS 657
V ++ E G PN ++ G+ + + +G ++ G PN D T +H A+
Sbjct: 28 VRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 658 YFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710
G +T+++L + GA + G+ DLA +GH+ IA YL A
Sbjct: 87 REGFLDTLVVLHRAGARLDVCD------AWGRLPVDLAEEQGHRDIARYLHAA 133
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 585 LIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP 642
LIQ N L CE+L+ + G N D G+G +H A LG+ + G
Sbjct: 239 LIQATAANSLLACEFLL----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 643 NFRDARGRTALHWASYFGREETVIML 668
RD+ GR L A + V +L
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 585 LIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP 642
LIQ N L CE+L+ + G N D G+G +H A LG+ + G
Sbjct: 239 LIQATAANSLLACEFLL----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 643 NFRDARGRTALHWASYFGREETVIML 668
RD+ GR L A + V +L
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 585 LIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP 642
LIQ N L CE+L+ + G N D G+G +H A LG+ + G
Sbjct: 239 LIQATAANSLLACEFLL----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 643 NFRDARGRTALHWASYFGREETVIML 668
RD+ GR L A + V +L
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665
G P++ D G V+H AA G ++ ++ N D G LH A+ G V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 666 IMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYL 707
LVK A+ + G TA DLA G + +
Sbjct: 120 EFLVKHTASNVGHRNHK-----GDTACDLARLYGRNEVVSLM 156
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 622 LAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAV--E 679
LAA L E + +I + N D G++ALHWA+ + ++L+K GA +
Sbjct: 21 LAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNK 80
Query: 680 DPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSL 719
+ TP F AA S K + + A D++ H+ L
Sbjct: 81 EETPLF----LAAREGSYETAKVLLDHFANRDITDHMDRL 116
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDP-TPAFPGGQTAADLA 695
R A G TALH A+ + E ++L++ AAP V +P T GQTA +A
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIA 82
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVE 679
+H AA G+ ++ G + + RT L A+ E V L+K GA+
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK----AGALV 70
Query: 680 DPTPAFPGGQTAADLASSRGHKGIAGYL 707
DP A G T LA+ +GH + YL
Sbjct: 71 DPKDA--EGSTCLHLAAKKGHYEVVQYL 96
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 596 EWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHW 655
E + + + G N DDGG + A + ++ +++ G N RD LHW
Sbjct: 91 EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHW 150
Query: 656 ASYFGREETVIMLV 669
A++ G + +L+
Sbjct: 151 AAFSGCVDIAEILL 164
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 616 GQGVVHLAAALGYEWAMRPIIA-TGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA 674
G+ +H AA + ++ ++ G + + +D G+T + A+ GR E V L++ GA+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 675 PGAVEDPTPAFPGGQTAADLASSRGHKGI 703
AV D T TA LA + H I
Sbjct: 339 VEAV-DAT-----DHTARQLAQANNHHNI 361
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGV 640
SR+ +++ LLR+ G P + G LAA G ++ ++ G
Sbjct: 70 SREDIVELLLRH-------------GADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 641 SPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG----AVEDPTPAFPGGQTAADLAS 696
N D G TA A+ +G+ + + L K GA ED GG TA A+
Sbjct: 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176
Query: 697 SRGHKGIAGYLAEADLSSHLSSLTVNENGMDNV 729
+GH + L L + + N DN+
Sbjct: 177 EKGHVEVLKIL--------LDEMGADVNACDNM 201
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
D GG +H A + G+ ++ G N D T LH A+ G+ E +L++ G
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
Query: 673 AAPGAVEDPTPAFPGGQTAADL 694
A DPT G T DL
Sbjct: 134 A------DPTKKNRDGNTPLDL 149
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
D GG +H A + G+ ++ G N D T LH A+ G+ E +L++ G
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 135
Query: 673 AAPGAVEDPTPAFPGGQTAADL 694
A DPT G T DL
Sbjct: 136 A------DPTKKNRDGNTPLDL 151
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLG 672
D GG +H A + G+ ++ G N D T LH A+ G+ E +L++ G
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 673 AAPGAVEDPTPAFPGGQTAADL 694
A DPT G T DL
Sbjct: 132 A------DPTKKNRDGNTPLDL 147
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGV 640
SR+ +++ LLR+ G P + G LAA G ++ ++ G
Sbjct: 50 SREDIVELLLRH-------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 641 SPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG----AVEDPTPAFPGGQTAADLAS 696
N D G TA A+ +G+ + + L K GA ED GG TA A+
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 697 SRGH 700
+GH
Sbjct: 157 EKGH 160
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 822 YLHFAAIKIQQKYRGWKGRKDFLK---IRNHIVKL---QAHVRGHQVRKQYKKVVW 871
+L F I +++ Y KG+++F++ R+ L HV GH R++Y + W
Sbjct: 219 HLKFGTISMREAYYTQKGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISW 274
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVK 670
G+ ++H+A+ G ++ ++ G PN +D G T LH A G + V +L++
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,634,807
Number of Sequences: 62578
Number of extensions: 1169660
Number of successful extensions: 2745
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2486
Number of HSP's gapped (non-prelim): 247
length of query: 988
length of database: 14,973,337
effective HSP length: 108
effective length of query: 880
effective length of database: 8,214,913
effective search space: 7229123440
effective search space used: 7229123440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)