Query 001972
Match_columns 988
No_of_seqs 835 out of 4105
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 13:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0520 Uncharacterized conser 100.0 5E-133 1E-137 1188.2 44.7 896 6-974 16-960 (975)
2 PF03859 CG-1: CG-1 domain; I 100.0 1.9E-62 4E-67 455.3 9.8 117 19-136 2-118 (118)
3 KOG4412 26S proteasome regulat 99.9 9.6E-22 2.1E-26 195.3 9.7 143 608-769 29-179 (226)
4 KOG4412 26S proteasome regulat 99.8 3.2E-21 6.9E-26 191.7 11.6 156 579-747 35-196 (226)
5 PHA02791 ankyrin-like protein; 99.8 1.5E-18 3.4E-23 191.7 17.3 155 583-751 62-223 (284)
6 PHA02791 ankyrin-like protein; 99.8 7.4E-18 1.6E-22 186.3 17.1 157 579-747 27-184 (284)
7 KOG0509 Ankyrin repeat and DHH 99.8 3.6E-18 7.7E-23 197.6 13.9 169 586-773 48-223 (600)
8 PHA02946 ankyin-like protein; 99.8 1.1E-17 2.3E-22 196.6 17.6 170 583-771 38-217 (446)
9 PHA02878 ankyrin repeat protei 99.7 2.7E-17 5.7E-22 195.0 17.8 151 584-747 39-259 (477)
10 PHA02878 ankyrin repeat protei 99.7 2.2E-17 4.9E-22 195.6 16.8 156 597-770 148-308 (477)
11 PHA02859 ankyrin repeat protei 99.7 2.3E-17 5E-22 174.9 14.9 144 582-737 51-202 (209)
12 PHA02716 CPXV016; CPX019; EVM0 99.7 3.3E-17 7.1E-22 199.8 16.7 169 581-768 176-405 (764)
13 PHA02875 ankyrin repeat protei 99.7 6.3E-17 1.4E-21 188.0 17.0 158 582-747 68-226 (413)
14 PHA02859 ankyrin repeat protei 99.7 1.1E-16 2.5E-21 169.5 17.0 163 584-769 23-199 (209)
15 PHA02743 Viral ankyrin protein 99.7 6.2E-17 1.3E-21 165.4 13.9 127 584-716 22-156 (166)
16 PHA02874 ankyrin repeat protei 99.7 1.1E-16 2.5E-21 187.3 17.7 150 583-747 125-279 (434)
17 PHA02874 ankyrin repeat protei 99.7 1.3E-16 2.8E-21 186.9 17.4 152 583-747 36-214 (434)
18 PHA02875 ankyrin repeat protei 99.7 1.9E-16 4.1E-21 184.0 18.3 154 581-747 34-192 (413)
19 KOG0509 Ankyrin repeat and DHH 99.7 3.4E-17 7.3E-22 189.6 11.1 155 581-747 77-236 (600)
20 PLN03192 Voltage-dependent pot 99.7 6.8E-16 1.5E-20 194.3 23.7 150 583-747 526-679 (823)
21 PHA02798 ankyrin-like protein; 99.7 2E-16 4.4E-21 188.1 17.8 177 581-770 70-299 (489)
22 PHA03100 ankyrin repeat protei 99.7 1.6E-16 3.4E-21 187.9 16.3 154 582-747 141-307 (480)
23 PHA03100 ankyrin repeat protei 99.7 2.5E-16 5.4E-21 186.2 17.8 152 583-747 69-241 (480)
24 PHA03095 ankyrin-like protein; 99.7 2.3E-16 5.1E-21 185.9 17.4 155 581-747 46-213 (471)
25 PHA02989 ankyrin repeat protei 99.7 3.1E-16 6.7E-21 186.8 17.2 175 583-770 70-297 (494)
26 PHA03095 ankyrin-like protein; 99.7 2.8E-16 6.1E-21 185.2 16.4 140 596-747 27-178 (471)
27 PHA02716 CPXV016; CPX019; EVM0 99.7 3.4E-16 7.3E-21 191.0 15.4 157 594-769 153-359 (764)
28 PHA02876 ankyrin repeat protei 99.7 6.8E-16 1.5E-20 190.8 18.1 172 581-771 272-451 (682)
29 PHA02798 ankyrin-like protein; 99.7 5.3E-16 1.1E-20 184.6 16.4 144 593-747 48-210 (489)
30 KOG0508 Ankyrin repeat protein 99.7 1.5E-16 3.2E-21 177.2 10.0 141 595-744 96-236 (615)
31 PHA02989 ankyrin repeat protei 99.7 6.8E-16 1.5E-20 183.9 16.5 160 582-747 108-313 (494)
32 PHA02946 ankyin-like protein; 99.7 6.5E-16 1.4E-20 181.6 15.4 171 579-771 69-251 (446)
33 PHA02884 ankyrin repeat protei 99.6 2.1E-15 4.5E-20 167.3 15.1 151 579-747 30-186 (300)
34 PHA02795 ankyrin-like protein; 99.6 2.4E-15 5.2E-20 173.2 15.7 154 580-747 114-286 (437)
35 PHA02876 ankyrin repeat protei 99.6 2.8E-15 6.2E-20 185.3 17.4 155 581-747 306-467 (682)
36 PHA02743 Viral ankyrin protein 99.6 1.5E-15 3.2E-20 155.2 12.2 132 605-747 9-152 (166)
37 PHA02741 hypothetical protein; 99.6 1.9E-15 4E-20 154.8 12.8 126 581-713 20-157 (169)
38 KOG0512 Fetal globin-inducing 99.6 2.9E-15 6.4E-20 148.4 13.3 139 584-736 66-207 (228)
39 PHA02741 hypothetical protein; 99.6 2E-15 4.4E-20 154.5 12.2 128 609-747 14-156 (169)
40 PHA02730 ankyrin-like protein; 99.6 4.9E-15 1.1E-19 177.9 16.3 157 579-747 340-522 (672)
41 KOG0195 Integrin-linked kinase 99.6 7.1E-16 1.5E-20 162.6 7.9 129 605-745 23-151 (448)
42 PHA02736 Viral ankyrin protein 99.6 1.5E-15 3.2E-20 152.7 9.0 127 581-714 16-152 (154)
43 KOG0502 Integral membrane anky 99.6 2E-15 4.2E-20 154.5 9.4 129 605-746 149-281 (296)
44 PHA02917 ankyrin-like protein; 99.6 9.3E-15 2E-19 178.8 16.6 129 579-715 29-165 (661)
45 KOG0510 Ankyrin repeat protein 99.6 5.2E-15 1.1E-19 174.2 13.2 131 609-747 266-401 (929)
46 PLN03192 Voltage-dependent pot 99.6 3E-15 6.6E-20 188.4 11.5 128 579-715 555-682 (823)
47 PHA02917 ankyrin-like protein; 99.6 1.7E-14 3.7E-19 176.5 16.4 159 580-747 66-254 (661)
48 PHA02795 ankyrin-like protein; 99.6 2.2E-14 4.7E-19 165.4 16.0 164 593-771 87-263 (437)
49 KOG4177 Ankyrin [Cell wall/mem 99.6 7.8E-15 1.7E-19 182.3 12.3 146 581-734 506-651 (1143)
50 cd01175 IPT_COE IPT domain of 99.6 9.3E-15 2E-19 128.0 9.1 80 411-498 2-84 (85)
51 PF12796 Ank_2: Ankyrin repeat 99.6 1.6E-14 3.5E-19 131.4 11.1 85 620-714 1-85 (89)
52 KOG0508 Ankyrin repeat protein 99.6 9.2E-15 2E-19 163.1 10.5 137 599-747 58-207 (615)
53 KOG0514 Ankyrin repeat protein 99.6 2.6E-15 5.7E-20 163.1 6.0 156 609-781 261-426 (452)
54 KOG0510 Ankyrin repeat protein 99.5 1.5E-14 3.2E-19 170.4 10.4 132 579-714 270-403 (929)
55 PHA02884 ankyrin repeat protei 99.5 3.6E-14 7.9E-19 157.5 12.7 113 611-734 27-144 (300)
56 PHA02736 Viral ankyrin protein 99.5 2.1E-14 4.6E-19 144.4 9.7 126 609-747 10-150 (154)
57 KOG4177 Ankyrin [Cell wall/mem 99.5 6.3E-14 1.4E-18 174.4 13.3 193 584-786 476-668 (1143)
58 PHA02730 ankyrin-like protein; 99.5 2.9E-13 6.3E-18 162.9 16.8 169 581-752 40-232 (672)
59 KOG0505 Myosin phosphatase, re 99.5 9.4E-14 2E-18 158.3 11.7 154 587-747 45-255 (527)
60 KOG0505 Myosin phosphatase, re 99.5 5.6E-14 1.2E-18 160.1 8.7 145 582-739 73-276 (527)
61 PF12796 Ank_2: Ankyrin repeat 99.4 4.1E-13 8.9E-18 122.1 10.3 89 586-679 1-89 (89)
62 KOG0507 CASK-interacting adapt 99.4 3.4E-13 7.3E-18 158.1 9.0 159 583-747 50-245 (854)
63 KOG0195 Integrin-linked kinase 99.4 4.3E-13 9.2E-18 141.8 8.3 129 579-714 31-159 (448)
64 TIGR00870 trp transient-recept 99.4 2.5E-12 5.3E-17 160.8 15.7 148 579-737 49-218 (743)
65 PHA02792 ankyrin-like protein; 99.4 3.4E-12 7.3E-17 152.3 16.0 153 581-747 305-477 (631)
66 KOG0502 Integral membrane anky 99.4 4.7E-13 1E-17 137.2 7.2 108 597-711 174-281 (296)
67 KOG0514 Ankyrin repeat protein 99.4 9.4E-13 2E-17 143.5 9.7 157 579-745 265-429 (452)
68 KOG4214 Myotrophin and similar 99.4 2.2E-12 4.7E-17 116.1 9.2 112 619-743 5-116 (117)
69 KOG0512 Fetal globin-inducing 99.4 1.8E-12 3.9E-17 128.8 8.8 105 618-734 65-170 (228)
70 KOG0507 CASK-interacting adapt 99.3 1.6E-12 3.5E-17 152.5 8.4 132 607-746 40-171 (854)
71 cd00204 ANK ankyrin repeats; 99.3 1.5E-11 3.3E-16 115.9 12.7 94 612-711 3-96 (126)
72 COG0666 Arp FOG: Ankyrin repea 99.3 1.1E-11 2.3E-16 128.7 12.3 106 600-711 90-203 (235)
73 TIGR00870 trp transient-recept 99.3 9.1E-12 2E-16 155.8 13.5 160 579-745 79-279 (743)
74 cd00204 ANK ankyrin repeats; 99.3 2.8E-11 6E-16 114.0 13.3 119 583-708 8-126 (126)
75 PHA02792 ankyrin-like protein; 99.3 7.1E-12 1.5E-16 149.6 11.1 119 586-711 343-476 (631)
76 KOG0515 p53-interacting protei 99.3 5.2E-12 1.1E-16 142.4 9.2 120 584-710 553-674 (752)
77 KOG1710 MYND Zn-finger and ank 99.3 8.7E-12 1.9E-16 132.2 10.2 121 581-709 12-133 (396)
78 KOG4214 Myotrophin and similar 99.2 1.5E-11 3.3E-16 110.7 6.5 88 601-695 20-107 (117)
79 PF13857 Ank_5: Ankyrin repeat 99.2 1E-11 2.2E-16 104.0 4.2 50 607-656 7-56 (56)
80 PF13857 Ank_5: Ankyrin repeat 99.2 1.3E-11 2.8E-16 103.4 4.6 55 635-695 1-56 (56)
81 PF13637 Ank_4: Ankyrin repeat 99.2 3.1E-11 6.7E-16 100.0 6.0 54 616-669 1-54 (54)
82 PTZ00322 6-phosphofructo-2-kin 99.2 7.9E-11 1.7E-15 145.1 12.1 85 620-710 86-170 (664)
83 COG0666 Arp FOG: Ankyrin repea 99.2 3.7E-10 8E-15 117.1 15.4 126 609-746 66-203 (235)
84 KOG0520 Uncharacterized conser 99.1 1.9E-10 4.2E-15 140.2 12.8 262 425-734 402-687 (975)
85 PF01833 TIG: IPT/TIG domain; 99.1 2E-10 4.4E-15 103.2 9.6 84 410-497 1-85 (85)
86 KOG3676 Ca2+-permeable cation 99.1 4.2E-10 9.2E-15 134.2 13.8 156 580-745 141-330 (782)
87 PF13637 Ank_4: Ankyrin repeat 99.1 1.6E-10 3.5E-15 95.7 6.5 54 649-708 1-54 (54)
88 PTZ00322 6-phosphofructo-2-kin 99.1 3.5E-10 7.6E-15 139.4 10.8 104 586-696 86-196 (664)
89 cd01179 IPT_plexin_repeat2 Sec 99.1 9.7E-10 2.1E-14 100.1 10.8 84 410-499 1-85 (85)
90 KOG0515 p53-interacting protei 99.1 2.8E-10 6E-15 128.7 8.0 104 620-734 554-657 (752)
91 KOG3676 Ca2+-permeable cation 99.0 9.5E-10 2.1E-14 131.3 11.1 124 580-710 182-330 (782)
92 KOG4369 RTK signaling protein 99.0 5E-10 1.1E-14 134.5 6.1 159 582-747 757-916 (2131)
93 KOG1710 MYND Zn-finger and ank 99.0 2.2E-09 4.7E-14 114.3 9.6 116 616-742 12-131 (396)
94 cd00102 IPT Immunoglobulin-lik 98.9 5.2E-09 1.1E-13 95.1 10.5 84 410-498 1-88 (89)
95 KOG4369 RTK signaling protein 98.8 5.5E-09 1.2E-13 125.9 4.7 126 615-747 756-881 (2131)
96 cd00603 IPT_PCSR IPT domain of 98.7 1.3E-07 2.7E-12 86.7 10.5 85 410-498 1-89 (90)
97 KOG0818 GTPase-activating prot 98.7 6.2E-08 1.3E-12 109.5 9.4 95 609-709 120-221 (669)
98 cd01180 IPT_plexin_repeat1 Fir 98.6 1.7E-07 3.7E-12 87.1 9.6 87 411-499 2-94 (94)
99 KOG0705 GTPase-activating prot 98.6 2.5E-07 5.4E-12 106.4 10.9 96 579-676 622-721 (749)
100 KOG0783 Uncharacterized conser 98.5 3.4E-08 7.4E-13 116.9 2.9 83 609-697 45-128 (1267)
101 smart00429 IPT ig-like, plexin 98.5 3.7E-07 8.1E-12 83.6 8.9 84 410-498 2-90 (90)
102 KOG0506 Glutaminase (contains 98.5 9.7E-08 2.1E-12 107.6 5.4 93 613-711 503-596 (622)
103 KOG0160 Myosin class V heavy c 98.5 1.4E-06 3E-11 107.2 14.8 123 763-890 596-738 (862)
104 KOG0782 Predicted diacylglycer 98.4 9.3E-07 2E-11 101.0 8.8 122 582-711 867-990 (1004)
105 cd01181 IPT_plexin_repeat3 Thi 98.3 1.7E-06 3.6E-11 81.2 8.5 73 410-485 1-81 (99)
106 PF13606 Ank_3: Ankyrin repeat 98.3 5E-07 1.1E-11 65.9 3.7 29 648-676 1-29 (30)
107 cd02849 CGTase_C_term Cgtase ( 98.3 4.4E-06 9.5E-11 75.5 9.6 79 410-497 3-81 (81)
108 PF00023 Ank: Ankyrin repeat H 98.3 1.1E-06 2.4E-11 65.3 4.3 32 648-679 1-32 (33)
109 KOG0783 Uncharacterized conser 98.2 5.1E-07 1.1E-11 107.2 2.9 81 642-733 45-125 (1267)
110 KOG0160 Myosin class V heavy c 98.2 4.8E-05 1E-09 94.0 19.2 85 771-864 674-758 (862)
111 COG5022 Myosin heavy chain [Cy 98.2 3.2E-05 6.9E-10 98.2 17.6 175 767-954 665-892 (1463)
112 KOG0818 GTPase-activating prot 98.2 5.6E-06 1.2E-10 94.0 9.3 88 582-670 133-221 (669)
113 PF13606 Ank_3: Ankyrin repeat 98.1 2.5E-06 5.3E-11 62.3 3.6 30 615-644 1-30 (30)
114 PF00023 Ank: Ankyrin repeat H 98.1 2.9E-06 6.2E-11 63.1 3.9 33 615-647 1-33 (33)
115 KOG0705 GTPase-activating prot 98.1 5.3E-06 1.2E-10 95.8 7.9 89 620-714 628-720 (749)
116 KOG0164 Myosin class I heavy c 98.1 3.7E-05 8E-10 90.8 14.0 117 766-894 618-758 (1001)
117 KOG0522 Ankyrin repeat protein 98.1 7E-06 1.5E-10 94.7 7.4 67 605-671 44-110 (560)
118 KOG0522 Ankyrin repeat protein 98.0 7.7E-06 1.7E-10 94.3 7.2 88 618-711 22-111 (560)
119 cd00604 IPT_CGTD IPT domain (d 97.9 6.1E-05 1.3E-09 68.1 9.7 79 411-498 2-80 (81)
120 PTZ00014 myosin-A; Provisional 97.9 3.2E-05 7E-10 96.9 9.5 95 767-865 698-818 (821)
121 KOG0506 Glutaminase (contains 97.9 1.1E-05 2.4E-10 91.5 4.3 85 589-674 513-598 (622)
122 KOG2384 Major histocompatibili 97.8 4E-05 8.6E-10 78.3 7.6 65 640-710 3-68 (223)
123 KOG0521 Putative GTPase activa 97.8 1.3E-05 2.9E-10 99.5 4.7 99 605-709 643-743 (785)
124 KOG3609 Receptor-activated Ca2 97.7 0.00015 3.2E-09 88.3 9.6 103 607-716 53-159 (822)
125 KOG2384 Major histocompatibili 97.6 0.00012 2.7E-09 74.8 6.2 70 606-675 2-72 (223)
126 KOG0511 Ankyrin repeat protein 97.5 0.00014 3E-09 80.8 6.6 61 617-677 37-97 (516)
127 PF00612 IQ: IQ calmodulin-bin 97.5 0.00011 2.3E-09 49.2 3.5 19 848-866 2-20 (21)
128 KOG0782 Predicted diacylglycer 97.4 0.00017 3.6E-09 83.2 6.0 102 621-734 871-974 (1004)
129 KOG0511 Ankyrin repeat protein 97.4 0.00078 1.7E-08 75.1 9.6 60 651-716 38-97 (516)
130 PF00612 IQ: IQ calmodulin-bin 97.3 0.00026 5.6E-09 47.4 3.4 21 824-844 1-21 (21)
131 COG5022 Myosin heavy chain [Cy 96.8 0.093 2E-06 68.0 21.5 47 823-869 841-887 (1463)
132 KOG0161 Myosin class II heavy 96.7 0.053 1.1E-06 73.1 18.9 97 767-866 697-818 (1930)
133 KOG0521 Putative GTPase activa 96.5 0.0023 4.9E-08 80.0 4.7 88 583-671 657-744 (785)
134 smart00015 IQ Short calmodulin 96.3 0.004 8.6E-08 43.9 3.2 21 847-867 3-23 (26)
135 cd00602 IPT_TF IPT domain of e 96.3 0.015 3.4E-07 54.8 7.8 82 411-498 2-100 (101)
136 KOG0162 Myosin class I heavy c 96.2 0.02 4.3E-07 68.6 9.9 94 766-869 618-738 (1106)
137 KOG3610 Plexins (functional se 96.2 0.012 2.6E-07 74.6 8.6 94 405-503 138-234 (1025)
138 smart00015 IQ Short calmodulin 96.1 0.0059 1.3E-07 43.0 3.1 22 823-844 2-23 (26)
139 smart00248 ANK ankyrin repeats 95.7 0.016 3.4E-07 39.2 3.7 27 649-675 2-28 (30)
140 cd01178 IPT_NFAT IPT domain of 95.5 0.053 1.2E-06 50.9 7.6 81 409-498 1-100 (101)
141 KOG2505 Ankyrin repeat protein 95.4 0.027 5.9E-07 65.3 6.4 41 617-657 431-471 (591)
142 cd01177 IPT_NFkappaB IPT domai 95.1 0.085 1.8E-06 49.5 7.6 82 411-498 2-101 (102)
143 smart00248 ANK ankyrin repeats 94.9 0.036 7.8E-07 37.3 3.7 29 615-643 1-29 (30)
144 KOG3609 Receptor-activated Ca2 94.3 0.11 2.5E-06 64.0 8.1 117 618-747 27-155 (822)
145 KOG2505 Ankyrin repeat protein 94.1 0.06 1.3E-06 62.5 5.0 62 629-696 404-471 (591)
146 cd01176 IPT_RBP-Jkappa IPT dom 93.7 0.32 6.9E-06 44.4 7.8 66 426-498 20-96 (97)
147 PTZ00014 myosin-A; Provisional 93.4 0.18 4E-06 63.9 8.1 41 848-888 778-818 (821)
148 KOG0163 Myosin class VI heavy 93.1 2.6 5.6E-05 51.6 16.2 23 848-870 814-836 (1259)
149 KOG2128 Ras GTPase-activating 92.8 1.1 2.3E-05 58.4 13.3 96 828-950 539-645 (1401)
150 PF08549 SWI-SNF_Ssr4: Fungal 92.3 0.32 6.9E-06 59.1 7.5 103 27-136 30-154 (669)
151 KOG0161 Myosin class II heavy 91.3 2.2 4.8E-05 58.3 14.3 40 848-887 774-816 (1930)
152 KOG2128 Ras GTPase-activating 90.6 2.2 4.7E-05 55.8 12.6 50 820-869 588-644 (1401)
153 KOG3836 HLH transcription fact 89.4 0.043 9.4E-07 65.4 -3.2 79 411-504 244-335 (605)
154 KOG0164 Myosin class I heavy c 87.7 1.6 3.6E-05 53.1 8.2 16 10-25 16-31 (1001)
155 KOG0163 Myosin class VI heavy 86.2 10 0.00022 46.8 13.4 32 822-853 811-842 (1259)
156 KOG3836 HLH transcription fact 82.1 0.95 2.1E-05 54.4 2.9 142 410-651 323-464 (605)
157 PRK15422 septal ring assembly 81.5 7.1 0.00015 35.1 7.3 67 919-985 6-73 (79)
158 COG3074 Uncharacterized protei 81.1 7.5 0.00016 33.9 7.0 67 919-985 6-73 (79)
159 PF12325 TMF_TATA_bd: TATA ele 80.8 23 0.0005 34.7 11.3 73 913-985 40-116 (120)
160 KOG1853 LIS1-interacting prote 78.0 13 0.00028 40.3 9.3 87 883-986 29-115 (333)
161 KOG4427 E3 ubiquitin protein l 77.7 3.2 6.8E-05 51.0 5.2 35 819-859 25-59 (1096)
162 PF09726 Macoilin: Transmembra 76.9 30 0.00064 43.7 13.6 32 955-986 626-657 (697)
163 PF15290 Syntaphilin: Golgi-lo 75.0 6.1 0.00013 43.5 6.0 65 923-987 74-153 (305)
164 KOG0942 E3 ubiquitin protein l 74.5 5.5 0.00012 50.1 6.2 25 822-846 27-51 (1001)
165 COG4026 Uncharacterized protei 73.8 15 0.00033 39.1 8.3 37 941-977 167-203 (290)
166 KOG3610 Plexins (functional se 71.8 4.3 9.2E-05 52.4 4.6 75 407-482 47-125 (1025)
167 KOG1029 Endocytic adaptor prot 71.2 93 0.002 39.1 15.1 26 960-985 481-506 (1118)
168 PF06005 DUF904: Protein of un 68.9 22 0.00047 31.7 7.1 60 919-984 6-65 (72)
169 KOG0995 Centromere-associated 67.9 39 0.00085 40.9 11.0 109 839-984 264-372 (581)
170 PF06128 Shigella_OspC: Shigel 67.6 15 0.00032 39.6 6.8 118 583-713 154-279 (284)
171 KOG1029 Endocytic adaptor prot 66.0 1.3E+02 0.0027 38.0 14.7 19 911-929 445-463 (1118)
172 PF02183 HALZ: Homeobox associ 64.9 6 0.00013 31.9 2.5 41 942-982 3-43 (45)
173 PF10168 Nup88: Nuclear pore c 63.5 1.2E+02 0.0026 38.6 14.9 24 819-842 552-575 (717)
174 PF07139 DUF1387: Protein of u 63.4 20 0.00043 40.3 7.1 66 922-987 183-258 (302)
175 KOG4427 E3 ubiquitin protein l 62.7 19 0.0004 44.7 7.1 28 842-869 24-52 (1096)
176 KOG0933 Structural maintenance 62.4 1.5E+02 0.0032 38.5 14.9 64 920-983 790-854 (1174)
177 PF10498 IFT57: Intra-flagella 61.6 2.7E+02 0.0059 32.5 16.2 67 911-983 274-346 (359)
178 KOG0250 DNA repair protein RAD 60.5 92 0.002 40.7 12.9 45 940-984 382-427 (1074)
179 PF14545 DBB: Dof, BCAP, and B 60.4 35 0.00077 34.4 7.6 77 415-499 3-88 (142)
180 KOG3684 Ca2+-activated K+ chan 60.3 40 0.00086 39.9 9.0 47 821-878 361-407 (489)
181 KOG4005 Transcription factor X 59.4 50 0.0011 35.7 8.8 44 938-981 98-141 (292)
182 PRK09039 hypothetical protein; 58.0 2.9E+02 0.0062 32.0 15.7 62 916-977 122-184 (343)
183 PF10498 IFT57: Intra-flagella 57.6 47 0.001 38.7 9.1 44 939-982 275-318 (359)
184 PF12128 DUF3584: Protein of u 57.0 3.5E+02 0.0076 36.8 18.4 43 939-981 492-534 (1201)
185 PF08317 Spc7: Spc7 kinetochor 56.8 2.8E+02 0.006 31.8 15.3 18 869-886 168-185 (325)
186 PF08317 Spc7: Spc7 kinetochor 56.3 2.4E+02 0.0053 32.3 14.7 45 940-984 212-256 (325)
187 PF08763 Ca_chan_IQ: Voltage g 55.8 13 0.00028 28.4 2.7 18 825-842 10-27 (35)
188 KOG0994 Extracellular matrix g 54.7 5.7E+02 0.012 34.1 17.9 21 449-469 1091-1114(1758)
189 smart00787 Spc7 Spc7 kinetocho 54.0 1.3E+02 0.0029 34.3 11.9 42 941-982 208-249 (312)
190 PF06128 Shigella_OspC: Shigel 53.9 19 0.00041 38.9 4.7 48 628-675 229-280 (284)
191 PF04899 MbeD_MobD: MbeD/MobD 52.8 51 0.0011 29.2 6.5 63 922-984 4-68 (70)
192 PF11932 DUF3450: Protein of u 51.6 56 0.0012 35.9 8.3 24 963-986 96-119 (251)
193 PRK10884 SH3 domain-containing 51.2 50 0.0011 35.4 7.5 33 949-981 137-169 (206)
194 PRK11637 AmiB activator; Provi 48.9 55 0.0012 38.9 8.2 57 929-985 73-130 (428)
195 KOG0250 DNA repair protein RAD 48.9 3E+02 0.0066 36.2 14.8 59 926-986 406-464 (1074)
196 PRK11637 AmiB activator; Provi 48.0 59 0.0013 38.6 8.3 27 955-981 93-119 (428)
197 PRK10884 SH3 domain-containing 48.0 60 0.0013 34.8 7.5 24 959-982 133-156 (206)
198 KOG1962 B-cell receptor-associ 46.6 1.6E+02 0.0034 31.9 10.2 50 910-959 158-208 (216)
199 KOG0994 Extracellular matrix g 46.0 9E+02 0.019 32.5 20.5 31 954-984 1720-1750(1758)
200 TIGR02168 SMC_prok_B chromosom 45.7 3.4E+02 0.0074 36.1 15.8 10 966-975 923-932 (1179)
201 KOG0377 Protein serine/threoni 45.7 33 0.00072 40.2 5.3 23 822-844 15-37 (631)
202 PF07926 TPR_MLP1_2: TPR/MLP1/ 45.4 1E+02 0.0022 30.5 8.2 7 941-947 42-48 (132)
203 KOG0971 Microtubule-associated 45.3 6.3E+02 0.014 32.9 16.1 73 910-984 366-443 (1243)
204 TIGR02168 SMC_prok_B chromosom 44.9 3.6E+02 0.0078 35.9 15.9 40 941-980 306-345 (1179)
205 PF11932 DUF3450: Protein of u 43.9 1.9E+02 0.0042 31.7 11.0 17 874-890 38-54 (251)
206 TIGR02680 conserved hypothetic 43.7 9.9E+02 0.021 33.1 19.6 23 875-897 815-837 (1353)
207 PF08826 DMPK_coil: DMPK coile 43.7 39 0.00084 29.2 4.2 43 942-984 16-58 (61)
208 PF10168 Nup88: Nuclear pore c 43.5 3.4E+02 0.0073 34.7 14.2 20 965-984 685-704 (717)
209 PF04156 IncA: IncA protein; 43.4 1.5E+02 0.0032 30.9 9.6 22 960-981 167-188 (191)
210 KOG0804 Cytoplasmic Zn-finger 42.6 2E+02 0.0044 34.2 10.9 22 964-985 427-448 (493)
211 PF14197 Cep57_CLD_2: Centroso 42.2 80 0.0017 27.9 6.1 60 920-985 8-67 (69)
212 PF10226 DUF2216: Uncharacteri 42.0 65 0.0014 33.9 6.3 67 908-974 7-78 (195)
213 PF09726 Macoilin: Transmembra 41.9 4.1E+02 0.0089 33.9 14.5 18 912-929 540-557 (697)
214 PRK13729 conjugal transfer pil 41.1 37 0.00079 40.6 5.0 47 938-984 77-123 (475)
215 PRK15422 septal ring assembly 40.9 1.1E+02 0.0024 27.8 6.6 59 926-984 6-65 (79)
216 PF00170 bZIP_1: bZIP transcri 40.8 44 0.00096 28.6 4.3 48 938-985 12-60 (64)
217 KOG0942 E3 ubiquitin protein l 40.5 26 0.00056 44.5 3.8 37 838-874 20-56 (1001)
218 PF12128 DUF3584: Protein of u 40.4 4.1E+02 0.009 36.1 15.2 58 925-982 360-419 (1201)
219 COG4026 Uncharacterized protei 40.0 2.8E+02 0.0061 30.0 10.6 19 824-842 72-90 (290)
220 PF15619 Lebercilin: Ciliary p 39.8 2.6E+02 0.0057 29.7 10.7 69 908-976 116-189 (194)
221 TIGR02680 conserved hypothetic 39.5 1E+03 0.022 32.9 18.8 23 822-844 244-266 (1353)
222 PF03158 DUF249: Multigene fam 39.2 38 0.00083 35.5 4.2 108 581-709 75-191 (192)
223 PF05667 DUF812: Protein of un 39.1 3.7E+02 0.008 33.6 13.3 30 954-983 501-530 (594)
224 PRK04863 mukB cell division pr 38.3 1.3E+03 0.027 32.4 19.1 21 837-857 296-316 (1486)
225 KOG0162 Myosin class I heavy c 37.8 51 0.0011 41.0 5.5 23 849-871 698-720 (1106)
226 PF14197 Cep57_CLD_2: Centroso 37.6 1.2E+02 0.0026 26.9 6.4 19 960-978 49-67 (69)
227 PF09099 Qn_am_d_aIII: Quinohe 37.4 1.4E+02 0.0031 27.2 7.1 64 410-482 2-70 (81)
228 PF06785 UPF0242: Uncharacteri 37.4 1.9E+02 0.0042 33.0 9.4 25 960-984 196-220 (401)
229 PF15035 Rootletin: Ciliary ro 36.8 2.4E+02 0.0053 29.6 9.8 23 872-894 17-39 (182)
230 PF10146 zf-C4H2: Zinc finger- 36.7 1.3E+02 0.0029 32.8 8.1 29 954-982 70-98 (230)
231 KOG2264 Exostosin EXT1L [Signa 36.5 1.3E+02 0.0028 36.5 8.3 50 938-987 101-150 (907)
232 PRK09039 hypothetical protein; 36.4 1.3E+02 0.0028 34.8 8.5 68 919-986 118-186 (343)
233 COG1579 Zn-ribbon protein, pos 36.1 6.3E+02 0.014 27.9 13.2 17 909-925 88-104 (239)
234 PF07888 CALCOCO1: Calcium bin 36.0 9.3E+02 0.02 29.8 15.8 9 445-453 4-12 (546)
235 KOG0377 Protein serine/threoni 35.9 54 0.0012 38.5 5.1 22 848-869 18-39 (631)
236 KOG3743 Recombination signal b 35.3 51 0.0011 39.6 4.9 42 424-472 506-547 (622)
237 TIGR03437 Soli_cterm Solibacte 35.1 1.3E+02 0.0029 32.4 7.7 63 424-486 4-75 (215)
238 PF07889 DUF1664: Protein of u 35.1 1.1E+02 0.0024 30.3 6.4 66 912-977 56-122 (126)
239 PRK11578 macrolide transporter 34.8 1.2E+02 0.0025 35.2 7.9 36 915-950 97-133 (370)
240 TIGR02169 SMC_prok_A chromosom 34.3 1E+03 0.022 31.8 17.5 10 702-711 121-130 (1164)
241 PF03106 WRKY: WRKY DNA -bindi 33.9 17 0.00037 31.2 0.6 8 70-77 2-9 (60)
242 TIGR02169 SMC_prok_A chromosom 33.9 6.7E+02 0.015 33.4 15.8 6 972-977 427-432 (1164)
243 KOG4343 bZIP transcription fac 33.7 63 0.0014 38.8 5.3 16 464-479 214-230 (655)
244 PF11559 ADIP: Afadin- and alp 33.3 5E+02 0.011 26.0 11.2 9 973-981 141-149 (151)
245 PF10186 Atg14: UV radiation r 33.1 1.5E+02 0.0033 32.7 8.3 19 965-983 119-137 (302)
246 PF15290 Syntaphilin: Golgi-lo 33.1 54 0.0012 36.4 4.3 34 947-980 71-104 (305)
247 TIGR01834 PHA_synth_III_E poly 32.7 4E+02 0.0087 30.6 11.2 47 940-986 266-317 (320)
248 PF15556 Zwint: ZW10 interacto 32.6 6.5E+02 0.014 27.0 14.3 29 956-984 153-181 (252)
249 PRK10361 DNA recombination pro 32.5 9.9E+02 0.021 29.1 18.3 12 968-979 168-179 (475)
250 PF12761 End3: Actin cytoskele 31.8 2E+02 0.0043 30.6 8.1 75 910-984 96-193 (195)
251 COG1196 Smc Chromosome segrega 31.5 6.9E+02 0.015 33.9 15.2 67 914-980 250-317 (1163)
252 PF12728 HTH_17: Helix-turn-he 31.4 36 0.00078 27.4 2.1 42 26-67 1-45 (51)
253 COG4372 Uncharacterized protei 31.3 4.2E+02 0.009 31.0 10.9 16 963-978 177-192 (499)
254 PF11929 DUF3447: Domain of un 31.2 62 0.0013 28.7 3.8 47 618-671 8-54 (76)
255 PF04156 IncA: IncA protein; 30.9 6.2E+02 0.013 26.2 12.3 43 939-981 139-181 (191)
256 TIGR02894 DNA_bind_RsfA transc 30.8 1.6E+02 0.0035 30.3 7.0 47 939-985 99-145 (161)
257 PF00038 Filament: Intermediat 30.5 1.7E+02 0.0037 32.9 8.1 13 914-926 170-182 (312)
258 KOG3584 cAMP response element 30.3 80 0.0017 35.2 5.0 8 464-471 185-192 (348)
259 PF13863 DUF4200: Domain of un 29.8 4.9E+02 0.011 25.0 10.2 28 957-984 80-107 (126)
260 PF14662 CCDC155: Coiled-coil 29.3 5.8E+02 0.012 27.2 10.8 24 913-936 84-107 (193)
261 KOG0978 E3 ubiquitin ligase in 29.3 1.3E+03 0.028 29.5 15.6 46 938-983 490-535 (698)
262 KOG0977 Nuclear envelope prote 29.3 4.1E+02 0.009 32.7 11.2 56 922-977 153-216 (546)
263 PF10186 Atg14: UV radiation r 28.9 6E+02 0.013 28.0 12.1 21 960-980 128-148 (302)
264 KOG0837 Transcriptional activa 28.6 1.6E+02 0.0035 32.5 6.9 68 911-985 201-268 (279)
265 TIGR01843 type_I_hlyD type I s 28.4 9.7E+02 0.021 27.7 16.4 28 956-983 244-271 (423)
266 PF05587 Anth_Ig: Anthrax rece 28.2 19 0.00042 34.3 0.0 73 411-487 7-88 (105)
267 KOG0976 Rho/Rac1-interacting s 28.1 9.9E+02 0.022 30.7 13.9 37 938-974 404-440 (1265)
268 TIGR01000 bacteriocin_acc bact 28.0 1.1E+03 0.023 28.3 14.7 41 943-983 275-316 (457)
269 KOG4643 Uncharacterized coiled 27.9 5.3E+02 0.012 33.9 12.0 60 920-979 491-558 (1195)
270 PF12808 Mto2_bdg: Micro-tubul 27.9 36 0.00079 28.4 1.5 25 954-978 25-49 (52)
271 COG1196 Smc Chromosome segrega 27.8 1.6E+03 0.034 30.5 17.6 41 942-982 868-908 (1163)
272 COG5185 HEC1 Protein involved 27.5 3.3E+02 0.007 32.7 9.4 26 840-865 301-326 (622)
273 smart00774 WRKY DNA binding do 27.4 23 0.0005 30.3 0.3 8 70-77 2-9 (59)
274 PRK05561 DNA topoisomerase IV 27.3 6E+02 0.013 32.7 12.8 41 939-979 439-479 (742)
275 TIGR03017 EpsF chain length de 27.2 1.1E+03 0.023 27.8 15.8 16 967-982 320-335 (444)
276 TIGR01843 type_I_hlyD type I s 27.2 7.6E+02 0.016 28.6 13.1 22 963-984 244-265 (423)
277 PF05529 Bap31: B-cell recepto 27.2 3.6E+02 0.0078 28.2 9.3 36 945-980 155-190 (192)
278 PF06156 DUF972: Protein of un 27.1 97 0.0021 29.8 4.5 42 943-984 14-55 (107)
279 smart00338 BRLZ basic region l 26.9 1.3E+02 0.0029 25.7 5.0 29 956-984 31-59 (65)
280 PRK00888 ftsB cell division pr 26.9 48 0.001 31.6 2.4 37 944-980 27-63 (105)
281 PF11929 DUF3447: Domain of un 26.8 98 0.0021 27.4 4.2 47 651-710 8-54 (76)
282 TIGR03007 pepcterm_ChnLen poly 26.7 7.5E+02 0.016 29.8 13.2 18 965-982 275-292 (498)
283 TIGR01062 parC_Gneg DNA topois 26.6 7E+02 0.015 32.1 13.1 42 938-979 425-466 (735)
284 PF05278 PEARLI-4: Arabidopsis 26.4 9.5E+02 0.021 26.9 13.1 39 946-984 223-261 (269)
285 PF06005 DUF904: Protein of un 26.0 1E+02 0.0022 27.5 4.1 47 938-984 12-58 (72)
286 PF10146 zf-C4H2: Zinc finger- 25.9 5.7E+02 0.012 28.0 10.6 17 943-959 87-103 (230)
287 TIGR03545 conserved hypothetic 25.7 1.6E+02 0.0034 36.5 7.0 10 881-890 178-187 (555)
288 PF10482 CtIP_N: Tumour-suppre 25.5 1.6E+02 0.0034 28.6 5.4 64 914-982 53-120 (120)
289 PF07888 CALCOCO1: Calcium bin 25.5 1.4E+03 0.029 28.4 17.6 45 940-984 279-323 (546)
290 PF11180 DUF2968: Protein of u 25.1 3.3E+02 0.0072 28.9 8.2 37 938-974 148-184 (192)
291 TIGR03545 conserved hypothetic 24.8 1.6E+02 0.0035 36.4 6.9 28 870-897 160-187 (555)
292 PF09728 Taxilin: Myosin-like 24.5 1.1E+03 0.024 26.9 14.8 21 966-986 203-223 (309)
293 PF12718 Tropomyosin_1: Tropom 23.6 4E+02 0.0086 26.9 8.4 72 911-982 15-90 (143)
294 COG3074 Uncharacterized protei 23.5 2.8E+02 0.0061 24.6 6.1 58 927-984 7-65 (79)
295 PRK02224 chromosome segregatio 23.3 1.2E+03 0.026 30.2 15.1 43 938-980 647-689 (880)
296 PRK03918 chromosome segregatio 22.6 6.2E+02 0.013 32.9 12.2 6 944-949 666-671 (880)
297 KOG0977 Nuclear envelope prote 22.5 1.5E+03 0.033 28.0 15.4 64 918-981 265-333 (546)
298 PF12072 DUF3552: Domain of un 22.5 9.4E+02 0.02 25.5 14.1 7 975-981 157-163 (201)
299 cd07666 BAR_SNX7 The Bin/Amphi 22.4 7.8E+02 0.017 27.2 10.9 17 939-955 158-174 (243)
300 PF04048 Sec8_exocyst: Sec8 ex 22.1 6.8E+02 0.015 25.0 9.8 57 926-982 67-124 (142)
301 KOG0979 Structural maintenance 21.6 2E+03 0.043 29.0 16.5 60 923-982 296-356 (1072)
302 PRK11546 zraP zinc resistance 21.6 1.6E+02 0.0035 29.8 5.0 48 938-985 62-116 (143)
303 KOG1709 Guanidinoacetate methy 21.4 70 0.0015 34.6 2.5 43 668-716 1-43 (271)
304 PRK11546 zraP zinc resistance 21.2 2.6E+02 0.0057 28.3 6.4 9 970-978 94-102 (143)
305 PRK00409 recombination and DNA 21.2 8E+02 0.017 31.8 12.4 6 649-654 339-344 (782)
306 TIGR01010 BexC_CtrB_KpsE polys 20.9 4.8E+02 0.01 30.1 9.7 79 909-987 169-264 (362)
307 PF05529 Bap31: B-cell recepto 20.9 2.1E+02 0.0046 30.0 6.1 30 955-984 158-187 (192)
308 PRK12704 phosphodiesterase; Pr 20.8 1.3E+03 0.028 28.3 13.6 6 976-981 162-167 (520)
309 smart00787 Spc7 Spc7 kinetocho 20.7 1.3E+03 0.028 26.4 14.8 47 926-972 213-260 (312)
310 PF12325 TMF_TATA_bd: TATA ele 20.6 4E+02 0.0088 26.2 7.4 7 943-949 81-87 (120)
311 PRK09578 periplasmic multidrug 20.6 2E+02 0.0042 33.6 6.4 15 938-952 116-130 (385)
312 KOG0972 Huntingtin interacting 20.4 5E+02 0.011 29.3 8.8 14 593-606 63-76 (384)
313 COG4674 Uncharacterized ABC-ty 20.4 5.7E+02 0.012 27.7 8.9 83 443-535 8-93 (249)
314 PF03158 DUF249: Multigene fam 20.4 1.5E+02 0.0032 31.4 4.6 93 615-716 75-171 (192)
315 PF07851 TMPIT: TMPIT-like pro 20.4 4.7E+02 0.01 30.2 9.0 37 943-979 45-82 (330)
316 PF07106 TBPIP: Tat binding pr 20.1 2.1E+02 0.0046 29.3 5.8 42 943-984 92-135 (169)
No 1
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=100.00 E-value=4.7e-133 Score=1188.19 Aligned_cols=896 Identities=39% Similarity=0.607 Sum_probs=622.0
Q ss_pred CCCCCCcccHHHHHHHHHHhcCChHHHHHHHHcccccccCCCCCCCCCCCceeeeehHhhhhhhccCccceeccCCCchH
Q 001972 6 RYVPNQQLDLEQILQEAQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVK 85 (988)
Q Consensus 6 ~~~~~~~~d~~~~~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~dg~~w~~~~~~~~~~ 85 (988)
-|.+.+.||+..+++|++.|||+|+||++||+||++|.++.+||+||.|||+||||||+|||||||||+|||||||||+|
T Consensus 16 ~~~sl~~l~~~~ll~~~~~rWl~~~EI~~il~n~~~~~lt~~s~trp~sGS~flfnRk~lr~fRKDGh~WkKkkDGKtir 95 (975)
T KOG0520|consen 16 PFKSLQDLDIQTLLPEAKSRWLTPEEILAILINHEKFTLTVSSPTRPQSGSIFLFNRKVLRYFRKDGHNWKKKKDGKTIR 95 (975)
T ss_pred chhhhhhhhhhhhhHHHHhccCChHHHHHHHhcccccccccCCCCCCCCCceeeeccHHHHHHhhcchhhhhcCCCCcCh
Confidence 45566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCeeeEEEEeeccccCccccceeeeeccCCcccEEEEeeeccccCccCCCCCCCCCCCCCccccCccccccc
Q 001972 86 EAHEKLKAGSIDVLHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVKEGYKSGRSAADPGSQIESSQTSSARSLAQ 165 (988)
Q Consensus 86 e~h~~l~~~~~~~~~~~y~~~~~~~~f~rr~y~~~~~~~~~~vlvhy~~~~~g~~~~~~~~~~~~~~~s~~~~~~~~~~~ 165 (988)
||||||||||+|+||||||||++|||||||||||||+.++||||||||||++-+...+......++. . +.
T Consensus 96 EaHe~LKvg~~~~l~~~Y~Hg~~~ptF~RRcYwllq~~~~hIVLVHYl~v~~~~~~~~~~~~~~~s~-------~---sd 165 (975)
T KOG0520|consen 96 EAHEKLKVGGVEVLHCYYAHGEINPTFQRRCYWLLQQELEHIVLVHYLNVKGNEDAAKGAGEIFSSI-------I---SD 165 (975)
T ss_pred HHHHhhccCCccceeeeeecccccchHHHHHHHhhccccCceEEEEEeecccccccccCcccccccc-------c---cc
Confidence 9999999999999999999999999999999999999999999999999994233212222111111 1 10
Q ss_pred cCCCCCcccCCCCCCccccccCCcccccccccccCCCCCCCCccccccccc-ccccc--------c-cccccc----CCC
Q 001972 166 ANSSAPAAQTSHASIPNKIDWNGQAVSSEFEDVDSGHGSGTPSVAQSIYGS-MSQNA--------S-LVAASI----AGL 231 (988)
Q Consensus 166 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~-~~~~~~----~~~ 231 (988)
.. .+.-+..+..++ +..+ + ++..++++++++.+.+..+-...|. -.|.. . +...+. .++
T Consensus 166 ~~--~S~~~~~~q~~~--~~~~-~--~s~~~~v~~i~s~~~~~~~g~~~~~s~~h~i~~~~~~s~~~~~~~p~s~~s~~~ 238 (975)
T KOG0520|consen 166 KA--WSLNQLAGQLSP--IFHN-H--SSVNEDVAEINSNQTGNALGSVFGNSRNHRIRLHEVNSLDPLYKLPVSDDSLNL 238 (975)
T ss_pred cc--ccHHHhhcccCc--chhc-c--cchHHHHHHHhhhccccccccccCcchhhhhcccccCCccccccccccCCcccc
Confidence 00 000011111111 0000 0 1334555554332221111111110 00000 0 000000 000
Q ss_pred ----CcccC-CCccccCccccCCCCCCCCcccccccccccccccccCC--------------CccccCCCCCcccccccc
Q 001972 232 ----PELSR-HPQWFAGSKINHGSGSSMWPQIDNSSRNATSVLDQHGH--------------QNFYVGQPSGADFITHKL 292 (988)
Q Consensus 232 ----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 292 (988)
+..+. .++.+... ++..+.|.+++++.++ .-...+++ +...+.+|+...+..++.
T Consensus 239 ~~~~~~~~~~~~~~~~~r----s~~~s~~te~l~n~~~--~~~~~g~s~s~~l~~i~~~~~~~~~~~~~p~~~nf~~~ss 312 (975)
T KOG0520|consen 239 SAPKPIDLPKGPTSVKQR----SSSPSYFTEILGNAPS--GLVSQGNSLSSSLQRISSFTGLDNAAYEQPNSQNFEPNSS 312 (975)
T ss_pred ccCCCcccccCCcchhhc----CCCCcchhhhcccCCC--cccccccccccchhhcccccccccccccCCcccccccccc
Confidence 00000 00000000 1111123333222221 00000000 000011111111111111
Q ss_pred chhhhccCccccccCcccccccccccccccccccCCCccCCCCCc--cccccccccccchhhhhhhccCCcCCCCCcCCC
Q 001972 293 TDARLASDSTIANIGTCGERLITDIDVHAVTTSSQGASQAGIKPK--EELGELKKLDSFGRWMDQEIGGDCDDSLMASDS 370 (988)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dsf~~w~~~~~~~d~~~~~~~ss~ 370 (988)
......+... +...|.. .........+ .....+ ....++++.|||.+||+ .+++ ..|..-.++-
T Consensus 313 ~~s~~~~~~~-g~g~~~~-------~~sa~~~~~P----~~~~~~~~~~~~~l~sgdsf~~~~~-t~~e-~~d~~q~~s~ 378 (975)
T KOG0520|consen 313 LNSHVTGQSY-GQGLQAR-------SPSATSESRP----ITSAADAALSELGLKSGDSFSRWAS-TFGE-ISDLGQDPSG 378 (975)
T ss_pred CCCCcccccc-CccccCC-------CcccccccCC----cchhhccccccccccccccccchhh-hhcc-cccCCCCCcc
Confidence 1111100000 0001100 0000000000 001112 13679999999999996 7777 4444422233
Q ss_pred CCcccccccccCccccccccccccccccccCCCccccCceEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEee
Q 001972 371 GNYWNTLDAENDDKEVSSLSHHMQLEMDSLGPSLSQEQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMF 450 (988)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~~s~~~~q~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~F 450 (988)
+.+|.... +...+.++ .++||+. +|+|+|+||||+|+|++||+||+|+|.+ .+.+..+|+|||
T Consensus 379 ~~~~~p~~--~~~~~~~s----------~~~~S~p-~qlf~I~DfSP~Wsy~~ggvKVlV~G~~----~~~~~~~ysc~F 441 (975)
T KOG0520|consen 379 EAVWTPEN--DPMGPPGS----------FLSPSSP-EQLFTITDFSPEWSYLDGGVKVLVTGFP----QDETRSNYSCMF 441 (975)
T ss_pred ccccccCC--CcCCCccc----------ccCCCCC-cceeeeeccCcccccCCCCcEEEEecCc----cccCCCceEEEe
Confidence 55676652 22222222 2677744 9999999999999999999999999973 345688999999
Q ss_pred CCcccceEEEecCeEEEecCCCCCceeEEEEEeC-CCcccccceeeeeecCCCCCCCCccccCCCchHhHHHHHHHHhhc
Q 001972 451 GEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGS-NRLACSEVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLY 529 (988)
Q Consensus 451 Gd~~Vpae~~~~gvLrC~~Pph~pG~V~l~Vt~~-n~~~~Sev~~FeYr~~~~~~~~~~~~~~~~~~e~~Lq~Rl~~LL~ 529 (988)
|+++|||++|++|||||+||||.||+|+|||+|+ ++..|||+++|+|...+....+..+ ......++.|+.||..|+.
T Consensus 442 g~~~VPAeliq~GVLrC~~P~h~~G~V~l~V~c~~~~~~~se~ref~~~~~~~~~~d~~s-~~d~~~~~sl~~rl~~~~~ 520 (975)
T KOG0520|consen 442 GEQRVPAELIQEGVLRCYAPPHEPGVVNLQVTCRISGLACSEVREFAYLVQPSQQIDKLS-WEDFLFQMSLLHRLETMLN 520 (975)
T ss_pred CCccccHHHhhcceeeeecCccCCCeEEEEEEecccceeeeeehheeecccCcccccccc-cccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 8999999999999998877665543 1134455666666666665
Q ss_pred cCCcc-ccccccccchhhhh--hHHHHhhhhCCCCCcchh-hcccccccccCCchhhhHHHHHHHHhhhHHHHHHHHHhC
Q 001972 530 LDPER-KWFDCTIEDCNKCK--LKNTIYSMRGDSEKDWGR-VDESPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEG 605 (988)
Q Consensus 530 ~~~~~-~~~~~s~~~~~k~~--l~~ki~~l~~~d~~~~~~-l~e~l~~~~~~~~~~~~~lL~~al~~~l~e~Lv~~Lle~ 605 (988)
..... .+....++..+..+ +..++..+ .++|.+ +............+.++++|..+++..++.||++++++.
T Consensus 521 r~~~~~~s~~~~~n~~~~~~~~l~skv~~l----~~~~~~r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~ 596 (975)
T KOG0520|consen 521 RKQSILSSKPSTENTSDAESGNLASKVVHL----LNEWAYRLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEW 596 (975)
T ss_pred HhHhHhhccCCccccccccchhHHHHHHHH----HHHHHHHHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcc
Confidence 22111 22223334444444 77777777 556666 411111122233778889999999999999999999997
Q ss_pred -CCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCC
Q 001972 606 -GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPA 684 (988)
Q Consensus 606 -Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~ 684 (988)
|...+..|.+|+..+|++|..|+.+.+.+.+..|..++++|..||||||||+.+|+..++..|++.|+++++..+|++.
T Consensus 597 ~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~ 676 (975)
T KOG0520|consen 597 AGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPE 676 (975)
T ss_pred cccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCC
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHHHHHHcCCCCCCCchhhhhhhhhhH
Q 001972 685 FPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIGVQSDGPAAEQLSLRGSLA 764 (988)
Q Consensus 685 d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~~Lle~~a~~~~~~~~~lslkdsL~ 764 (988)
++.|.|+..+|..+||.++..+|.++.+..+..++...+...+. .....+..+...+.. ....++..+++|+++
T Consensus 677 ~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~~~~~~~~~~s~---~~~~~~~~~t~~e~s---~~~~~~~~sl~Dtl~ 750 (975)
T KOG0520|consen 677 TPGGKTAADLARANGHKGIAGYLSEKALSAHLSNLELADPNLSA---DSEEDKAEKTSSEGS---PNPDEDSDSLKDTLA 750 (975)
T ss_pred CCCCCchhhhhhcccccchHHHHhhhHHHHHHhhccccccccCC---CchhhhhhhccCCCC---CCCCccccccccccc
Confidence 99999999999999999999999999888888777766632111 111112222221111 122344445999999
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhccCCCch-----hhHHHHHHHhhhhhhcccchh-h-HHHHHHHHHHHHHHHhhH
Q 001972 765 AVRKSAHAAALIQQAFRVRSFRHRQSIQSSDDV-----SEVSVDLVALGSLNKVSKMIH-F-EDYLHFAAIKIQQKYRGW 837 (988)
Q Consensus 765 AvR~a~~AA~rIQ~aFR~~s~R~r~L~~~~~d~-----~e~~~sIla~q~~~r~~~~~~-~-~~~~~~AAi~IQ~~~Rg~ 837 (988)
|+|+|+++|++||++||.++++++.+.....+. .+.+.++.. ..+-. + ++....||..||+.||||
T Consensus 751 avrdAa~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~-------~~a~~~~~~r~~~~aa~~iq~~f~~y 823 (975)
T KOG0520|consen 751 AVRDAAQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKA-------SSAFSMCDDRSDPAAASRIQKKFRGY 823 (975)
T ss_pred cccchHHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhc-------ccchhcCccccchhHHHHhhhhhhhH
Confidence 999999999999999999999988876644332 233333332 22211 1 335678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccc-cccccccHHHHHH
Q 001972 838 KGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVA-SENEKTDEYEFLR 916 (988)
Q Consensus 838 ~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l~~sv~~lqk~~~rwr~~r~~lr~~~~~~~~~~~~-~~~~~~~~~~~L~ 916 (988)
+.|+.|+.+|+.+|+||+++||++.||+|+++.|++..+++++.|||+++.++|+|+.+...+..+ +....++.|+|+|
T Consensus 824 k~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yK 903 (975)
T KOG0520|consen 824 KQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYK 903 (975)
T ss_pred HhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887555322 2355689999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhh
Q 001972 917 IGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 974 (988)
Q Consensus 917 ~~rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l 974 (988)
..+++++.++++|+++||+|+|+++||+|||||+.-+++.|... +.++....|+..+
T Consensus 904 q~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~~~~~~~~~~-~~~~~~~~~~~~~ 960 (975)
T KOG0520|consen 904 QLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLLVYEQYQESY-KEEALVGLLDDSL 960 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh-hhhccccccccch
Confidence 99999999999999999999999999999999998888877665 3333343444443
No 2
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.9e-62 Score=455.31 Aligned_cols=117 Identities=67% Similarity=1.236 Sum_probs=114.6
Q ss_pred HHHHHHhcCChHHHHHHHHcccccccCCCCCCCCCCCceeeeehHhhhhhhccCccceeccCCCchHHHhhhcccCCeee
Q 001972 19 LQEAQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDV 98 (988)
Q Consensus 19 ~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~dg~~w~~~~~~~~~~e~h~~l~~~~~~~ 98 (988)
++| ++|||+|+||++||+||++|++..+||++|+|||+|||||+++||||||||+|||||||||||||||||||||+|+
T Consensus 2 ~~~-~~rWl~~~Ei~~IL~n~~~~~~~~~~~~rP~sGslfLf~Rk~~r~fRkDG~~WrKkkdgktvRE~HekLKv~~~e~ 80 (118)
T PF03859_consen 2 LKE-KTRWLKPEEIAFILLNYEKFQIWLEPPNRPPSGSLFLFNRKVVRFFRKDGHNWRKKKDGKTVREDHEKLKVGGVEV 80 (118)
T ss_pred chH-hcccCCHHHHHHHHHhHHhCCcccCCCCCCCCceEEEEEchHhhhhhcccceeEEcCCCCchhhhhhhhccCceee
Confidence 455 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCccccceeeeeccCCcccEEEEeeeccc
Q 001972 99 LHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVK 136 (988)
Q Consensus 99 ~~~~y~~~~~~~~f~rr~y~~~~~~~~~~vlvhy~~~~ 136 (988)
||||||||++|||||||||||||++||||||||||||+
T Consensus 81 l~~~Yah~~~~~~F~RR~Ywll~~~~~~iVLVHY~~v~ 118 (118)
T PF03859_consen 81 LNCYYAHSEDNPTFHRRCYWLLDPPYEHIVLVHYLDVK 118 (118)
T ss_pred eEEEEEeeccCCCeeeEEEEccCCCCceEEEEEeeecC
Confidence 99999999999999999999999999999999999985
No 3
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.6e-22 Score=195.32 Aligned_cols=143 Identities=24% Similarity=0.318 Sum_probs=98.5
Q ss_pred CCCccCC-CCCcHHHHHHHcCChhhhHHHH-hCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHc-CCCCCccCCCCCC
Q 001972 608 GPNVIDD-GGQGVVHLAAALGYEWAMRPII-ATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAAPGAVEDPTPA 684 (988)
Q Consensus 608 d~n~~D~-~G~TpLH~AA~~G~~~iV~~LL-~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~-GAd~n~~dd~~~~ 684 (988)
.+|.++. +|+|||||||..|+.++|.+|+ ..++.+|.+|..||||||.||..|+.++|+.|+.+ |+++|+.+
T Consensus 29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t----- 103 (226)
T KOG4412|consen 29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT----- 103 (226)
T ss_pred hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec-----
Confidence 4455555 7777777777777777777777 44677777777777777777777777777777776 77777776
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHH----HhhHHHHHHHHHcCC-CCCCCchhhhhh
Q 001972 685 FPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA----LAAEKANETAAQIGV-QSDGPAAEQLSL 759 (988)
Q Consensus 685 d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~----~~~~~~v~~Lle~~a-~~~~~~~~~lsl 759 (988)
..|.||||||+..|..+|+.+|+++| +.++++|.. |.+|++ .|..+++++|+..++ .+. ..
T Consensus 104 -n~G~T~LHyAagK~r~eIaqlLle~g-----a~i~~kD~~-~qtplHRAAavGklkvie~Li~~~a~~n~-------qD 169 (226)
T KOG4412|consen 104 -NGGQTCLHYAAGKGRLEIAQLLLEKG-----ALIRIKDKQ-GQTPLHRAAAVGKLKVIEYLISQGAPLNT-------QD 169 (226)
T ss_pred -CCCcceehhhhcCChhhHHHHHHhcC-----CCCcccccc-cCchhHHHHhccchhhHHHHHhcCCCCCc-------cc
Confidence 47777777777777777777777777 566666665 665443 345677777777765 222 24
Q ss_pred hhhhHHHhhh
Q 001972 760 RGSLAAVRKS 769 (988)
Q Consensus 760 kdsL~AvR~a 769 (988)
+.+.++++.|
T Consensus 170 k~G~TpL~~a 179 (226)
T KOG4412|consen 170 KYGFTPLHHA 179 (226)
T ss_pred ccCccHHHHH
Confidence 5566666655
No 4
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.2e-21 Score=191.66 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=136.9
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHH-hCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhC-CCCCCccCCCCCcHhhHH
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIH-EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIAT-GVSPNFRDARGRTALHWA 656 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Ll-e~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~-Gadvn~~D~~G~TpLH~A 656 (988)
++...++||-+|.-+..+ +++.|+ +.+..+|.+|..||||||.||..|+.++|+.|+.. |+|+|..+..|.||||||
T Consensus 35 dqD~Rt~LHwa~S~g~~e-iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyA 113 (226)
T KOG4412|consen 35 DQDGRTPLHWACSFGHVE-IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYA 113 (226)
T ss_pred cccCCceeeeeeecCchh-HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhh
Confidence 445567788777766444 344444 77889999999999999999999999999999988 999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh--
Q 001972 657 SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA-- 734 (988)
Q Consensus 657 a~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~-- 734 (988)
+..|+.+|+++|+++|+.++++| ..|.||||-|+.-|..+++++|+..| +.+|..|+. |.||+..+
T Consensus 114 agK~r~eIaqlLle~ga~i~~kD------~~~qtplHRAAavGklkvie~Li~~~-----a~~n~qDk~-G~TpL~~al~ 181 (226)
T KOG4412|consen 114 AGKGRLEIAQLLLEKGALIRIKD------KQGQTPLHRAAAVGKLKVIEYLISQG-----APLNTQDKY-GFTPLHHALA 181 (226)
T ss_pred hcCChhhHHHHHHhcCCCCcccc------cccCchhHHHHhccchhhHHHHHhcC-----CCCCccccc-CccHHHHHHh
Confidence 99999999999999999999988 79999999999999999999999999 888899998 99998777
Q ss_pred --hHHHHHHHHHcCC
Q 001972 735 --AEKANETAAQIGV 747 (988)
Q Consensus 735 --~~~~v~~Lle~~a 747 (988)
+.++.-.|+..+|
T Consensus 182 e~~~d~a~lLV~~gA 196 (226)
T KOG4412|consen 182 EGHPDVAVLLVRAGA 196 (226)
T ss_pred ccCchHHHHHHHhcc
Confidence 4556667777776
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=191.65 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=131.9
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCC-cHhhHHHhcCC
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR-TALHWASYFGR 661 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~-TpLH~Aa~~G~ 661 (988)
.+.|+.++..+. ..+++.|+..|+++|..|..|+||||+||..|+.+++++|+.+|++++.++..|+ ||||+|+..|+
T Consensus 62 ~TpLh~Aa~~g~-~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~ 140 (284)
T PHA02791 62 EFPLHQAATLED-TKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 140 (284)
T ss_pred CCHHHHHHHCCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence 578888888774 4456888899999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchH-----HHHHHhhH
Q 001972 662 EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDN-----VAAALAAE 736 (988)
Q Consensus 662 ~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~-----taa~~~~~ 736 (988)
.++|++|+++|++. .+. ..|.||||+|+..|+.+++++|+++|++ ++.++.. |. .|+..+..
T Consensus 141 ~eivk~LL~~~~~~--~d~-----~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-----~n~~d~~-g~t~~L~~Aa~~~~~ 207 (284)
T PHA02791 141 VSIVSYFLSEIPST--FDL-----AILLSCIHITIKNGHVDMMILLLDYMTS-----TNTNNSL-LFIPDIKLAIDNKDL 207 (284)
T ss_pred HHHHHHHHhcCCcc--ccc-----ccCccHHHHHHHcCCHHHHHHHHHCCCC-----CCcccCC-CCChHHHHHHHcCCH
Confidence 99999999987643 221 2589999999999999999999999954 4444443 43 46778889
Q ss_pred HHHHHHHHcCC-CCCC
Q 001972 737 KANETAAQIGV-QSDG 751 (988)
Q Consensus 737 ~~v~~Lle~~a-~~~~ 751 (988)
++|+.|++.++ ++..
T Consensus 208 e~v~lLl~~Ga~in~~ 223 (284)
T PHA02791 208 EMLQALFKYDINIYSV 223 (284)
T ss_pred HHHHHHHHCCCCCccC
Confidence 99999999998 5444
No 6
>PHA02791 ankyrin-like protein; Provisional
Probab=99.76 E-value=7.4e-18 Score=186.26 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=131.0
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHh
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 658 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~ 658 (988)
+....+.|+.|+..+. ..+++.|++.|++++..+ |.||||+|+..|+.++|++|+..|++++.+|..|+||||+||.
T Consensus 27 D~~G~TpLh~Aa~~g~-~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~ 103 (284)
T PHA02791 27 DVHGHSALYYAIADNN-VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD 103 (284)
T ss_pred CCCCCcHHHHHHHcCC-HHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 3345678999998874 456688999999998764 7899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCCCCC-CcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHH
Q 001972 659 FGREETVIMLVKLGAAPGAVEDPTPAFPGG-QTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEK 737 (988)
Q Consensus 659 ~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G-~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~ 737 (988)
.|+.++|++|+++|++++..+ ..| .||||+|+..|+.+++++|++.|.+. .+....... ...|+..++.+
T Consensus 104 ~g~~eivk~Ll~~gadin~~~------~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~Tp-Lh~Aa~~g~~e 174 (284)
T PHA02791 104 SGNMQTVKLFVKKNWRLMFYG------KTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSC-IHITIKNGHVD 174 (284)
T ss_pred cCCHHHHHHHHHCCCCcCccC------CCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccH-HHHHHHcCCHH
Confidence 999999999999999998877 466 59999999999999999999987322 111111111 44566666889
Q ss_pred HHHHHHHcCC
Q 001972 738 ANETAAQIGV 747 (988)
Q Consensus 738 ~v~~Lle~~a 747 (988)
+++.|++.++
T Consensus 175 iv~lLL~~gA 184 (284)
T PHA02791 175 MMILLLDYMT 184 (284)
T ss_pred HHHHHHHCCC
Confidence 9999999998
No 7
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.76 E-value=3.6e-18 Score=197.60 Aligned_cols=169 Identities=22% Similarity=0.240 Sum_probs=129.8
Q ss_pred HHHHHHhhhHHHHHHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccC-CCCCcHhhHHHhcCCHH
Q 001972 586 IQNLLRNRLCEWLVWKIHEG-GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD-ARGRTALHWASYFGREE 663 (988)
Q Consensus 586 L~~al~~~l~e~Lv~~Lle~-Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D-~~G~TpLH~Aa~~G~~e 663 (988)
+..|++.+..+.+. .+++. |.++|..|.+|-|+|||||.+++.+++++|+++||+||..+ .-|.|||||||++|+..
T Consensus 48 ~v~A~q~G~l~~v~-~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~ 126 (600)
T KOG0509|consen 48 IVKATQYGELETVK-ELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS 126 (600)
T ss_pred hhhHhhcchHHHHH-HHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence 34556666555543 35555 88888888899999999999999999999999999999887 45789999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhH----HHH
Q 001972 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE----KAN 739 (988)
Q Consensus 664 iV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~----~~v 739 (988)
+|.+|+++||+|+++| ..|.||||+|+..||.-+|.||+.+| .+++++|+. |+||+..++- ..+
T Consensus 127 vv~lLlqhGAdpt~~D------~~G~~~lHla~~~~~~~~vayll~~~-----~d~d~~D~~-grTpLmwAaykg~~~~v 194 (600)
T KOG0509|consen 127 VVDLLLQHGADPTLKD------KQGLTPLHLAAQFGHTALVAYLLSKG-----ADIDLRDNN-GRTPLMWAAYKGFALFV 194 (600)
T ss_pred HHHHHHHcCCCCceec------CCCCcHHHHHHHhCchHHHHHHHHhc-----ccCCCcCCC-CCCHHHHHHHhcccHHH
Confidence 9999999999988887 68999999999999999999999888 777777777 8877766643 336
Q ss_pred HHHHHcCC-CCCCCchhhhhhhhhhHHHhhhhhHH
Q 001972 740 ETAAQIGV-QSDGPAAEQLSLRGSLAAVRKSAHAA 773 (988)
Q Consensus 740 ~~Lle~~a-~~~~~~~~~lslkdsL~AvR~a~~AA 773 (988)
..|+.-++ ... .-..++.+|+|.|+.+.
T Consensus 195 ~~LL~f~a~~~~------~d~~~g~TpLHwa~~~g 223 (600)
T KOG0509|consen 195 RRLLKFGASLLL------TDDNHGNTPLHWAVVGG 223 (600)
T ss_pred HHHHHhcccccc------cccccCCchHHHHHhcC
Confidence 77777775 211 11356777887765544
No 8
>PHA02946 ankyin-like protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=196.58 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=137.4
Q ss_pred hHHHHHHHH-hhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCC
Q 001972 583 DKLIQNLLR-NRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGR 661 (988)
Q Consensus 583 ~~lL~~al~-~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~ 661 (988)
..+||.++. ......+++.|+++|+++|.+|..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..++
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~ 117 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence 456776553 3334567888899999999999999999999999999999999999999999999999999999988764
Q ss_pred --HHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhh----
Q 001972 662 --EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA---- 735 (988)
Q Consensus 662 --~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~---- 735 (988)
.+++++|+++|++++...+ ..|.|||| |+..|+.+++++|++.| ++++..+.. |.+|+..+.
T Consensus 118 ~~~e~v~lLl~~Gadin~~~d-----~~g~tpL~-aa~~~~~~vv~~Ll~~g-----ad~~~~d~~-G~t~Lh~A~~~~~ 185 (446)
T PHA02946 118 EVIERINLLVQYGAKINNSVD-----EEGCGPLL-ACTDPSERVFKKIMSIG-----FEARIVDKF-GKNHIHRHLMSDN 185 (446)
T ss_pred chHHHHHHHHHcCCCcccccC-----CCCCcHHH-HHHCCChHHHHHHHhcc-----ccccccCCC-CCCHHHHHHHhcC
Confidence 7899999999999986432 68999997 66778999999999999 566666666 777766542
Q ss_pred --HHHHHHHHHcCC-CCCCCchhhhhhhhhhHHHhhhhh
Q 001972 736 --EKANETAAQIGV-QSDGPAAEQLSLRGSLAAVRKSAH 771 (988)
Q Consensus 736 --~~~v~~Lle~~a-~~~~~~~~~lslkdsL~AvR~a~~ 771 (988)
...++.|++.++ ++.. ..++.++++.|+.
T Consensus 186 ~~~~~v~~Ll~~Gadin~~-------d~~G~TpLH~Aa~ 217 (446)
T PHA02946 186 PKASTISWMMKLGISPSKP-------DHDGNTPLHIVCS 217 (446)
T ss_pred CCHHHHHHHHHcCCCCccc-------CCCCCCHHHHHHH
Confidence 478899999987 4332 3456677777664
No 9
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.74 E-value=2.7e-17 Score=194.99 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=111.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCh----------------------------------
Q 001972 584 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYE---------------------------------- 629 (988)
Q Consensus 584 ~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~---------------------------------- 629 (988)
+.||.|+..+.. .+++.|++.|+++|..|..|.||||+||..|+.
T Consensus 39 tPLh~A~~~g~~-e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~ 117 (477)
T PHA02878 39 IPLHQAVEARNL-DVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIF 117 (477)
T ss_pred chHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHH
Confidence 457777776644 345667778888888888888888888766542
Q ss_pred ------------------------------hhhHHHHhCCCCCCccCCC-CCcHhhHHHhcCCHHHHHHHHHcCCCCCcc
Q 001972 630 ------------------------------WAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGAV 678 (988)
Q Consensus 630 ------------------------------~iV~~LL~~Gadvn~~D~~-G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~ 678 (988)
+++++|++.|+++|..|.. |+||||+||..|+.+++++|+++|++++..
T Consensus 118 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~ 197 (477)
T PHA02878 118 KIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP 197 (477)
T ss_pred HHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence 1566677778888888877 888888888888888888888888887776
Q ss_pred CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh-----hHHHHHHHHHcCC
Q 001972 679 EDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA-----AEKANETAAQIGV 747 (988)
Q Consensus 679 dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~-----~~~~v~~Lle~~a 747 (988)
+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.+|+..+ ..++++.|++.++
T Consensus 198 d------~~g~tpLh~A~~~~~~~iv~~Ll~~g-----a~in~~d~~-g~TpLh~A~~~~~~~~iv~~Ll~~ga 259 (477)
T PHA02878 198 D------KTNNSPLHHAVKHYNKPIVHILLENG-----ASTDARDKC-GNTPLHISVGYCKDYDILKLLLEHGV 259 (477)
T ss_pred C------CCCCCHHHHHHHhCCHHHHHHHHHcC-----CCCCCCCCC-CCCHHHHHHHhcCCHHHHHHHHHcCC
Confidence 6 57888888888888888888888888 455555555 66665543 3567778888876
No 10
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.74 E-value=2.2e-17 Score=195.60 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=131.7
Q ss_pred HHHHHHHhCCCCCCccCCC-CCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCC
Q 001972 597 WLVWKIHEGGKGPNVIDDG-GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675 (988)
Q Consensus 597 ~Lv~~Lle~Gad~n~~D~~-G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 675 (988)
.+++.|++.|+++|..|.. |.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++.|+++
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i 227 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 4677888999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCcHHHHHHHc-CcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh--hHHHHHHHHHcCC-CCCC
Q 001972 676 GAVEDPTPAFPGGQTAADLASSR-GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA--AEKANETAAQIGV-QSDG 751 (988)
Q Consensus 676 n~~dd~~~~d~~G~TPLhlAa~~-G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~--~~~~v~~Lle~~a-~~~~ 751 (988)
+.++ ..|.||||+|+.. ++.+++++|+++| ++++..+...|.+|+..+ ..++++.|++.++ ++..
T Consensus 228 n~~d------~~g~TpLh~A~~~~~~~~iv~~Ll~~g-----advn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~ 296 (477)
T PHA02878 228 DARD------KCGNTPLHISVGYCKDYDILKLLLEHG-----VDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSL 296 (477)
T ss_pred CCCC------CCCCCHHHHHHHhcCCHHHHHHHHHcC-----CCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCc
Confidence 9887 6999999999975 7899999999999 455554432266666554 5678999999998 4443
Q ss_pred CchhhhhhhhhhHHHhhhh
Q 001972 752 PAAEQLSLRGSLAAVRKSA 770 (988)
Q Consensus 752 ~~~~~lslkdsL~AvR~a~ 770 (988)
..++.+++..|.
T Consensus 297 -------d~~g~TpL~~A~ 308 (477)
T PHA02878 297 -------NSYKLTPLSSAV 308 (477)
T ss_pred -------CCCCCCHHHHHH
Confidence 234455555543
No 11
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.74 E-value=2.3e-17 Score=174.85 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=116.6
Q ss_pred hhHHHHHHHHhh-hHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHc---CChhhhHHHHhCCCCCCccCCCCCcHhhHH
Q 001972 582 RDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVID-DGGQGVVHLAAAL---GYEWAMRPIIATGVSPNFRDARGRTALHWA 656 (988)
Q Consensus 582 ~~~lL~~al~~~-l~e~Lv~~Lle~Gad~n~~D-~~G~TpLH~AA~~---G~~~iV~~LL~~Gadvn~~D~~G~TpLH~A 656 (988)
..+.||.++..+ ....+++.|+++|+++|.++ ..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|
T Consensus 51 g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a 130 (209)
T PHA02859 51 YETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMY 130 (209)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 456778777643 24566788888999999887 4799999988764 478899999999999999999999999998
Q ss_pred Hh--cCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHH-HHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHH
Q 001972 657 SY--FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADL-ASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL 733 (988)
Q Consensus 657 a~--~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhl-Aa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~ 733 (988)
+. .++.+++++|+++|++++.++ ..|.||||. |+..|+.+++++|++.| ++++.++.. |.+|.+.
T Consensus 131 ~~~~~~~~~iv~~Li~~gadin~~d------~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-----adi~~~d~~-g~tpl~l 198 (209)
T PHA02859 131 MCNFNVRINVIKLLIDSGVSFLNKD------FDNNNILYSYILFHSDKKIFDFLTSLG-----IDINETNKS-GYNCYDL 198 (209)
T ss_pred HHhccCCHHHHHHHHHcCCCccccc------CCCCcHHHHHHHhcCCHHHHHHHHHcC-----CCCCCCCCC-CCCHHHH
Confidence 75 468899999999999998877 689999995 56678899999999999 666777776 8888887
Q ss_pred hhHH
Q 001972 734 AAEK 737 (988)
Q Consensus 734 ~~~~ 737 (988)
+...
T Consensus 199 a~~~ 202 (209)
T PHA02859 199 IKFR 202 (209)
T ss_pred Hhhh
Confidence 7543
No 12
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.73 E-value=3.3e-17 Score=199.79 Aligned_cols=169 Identities=12% Similarity=0.035 Sum_probs=136.7
Q ss_pred hhhHHHHHHHHhh-hHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCh--hhhHHHHhCCCCCCccCCCCCcHhhHH-
Q 001972 581 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYE--WAMRPIIATGVSPNFRDARGRTALHWA- 656 (988)
Q Consensus 581 ~~~~lL~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~--~iV~~LL~~Gadvn~~D~~G~TpLH~A- 656 (988)
...++||.++... ....+++.|+++|+++|..|..|.||||+|+..|+. ++|++|+++||++|.+|..|+||||+|
T Consensus 176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3457788765431 234577888899999999999999999999999964 899999999999999999999999975
Q ss_pred ------------------------------------HhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHH--c
Q 001972 657 ------------------------------------SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS--R 698 (988)
Q Consensus 657 ------------------------------------a~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~--~ 698 (988)
+..|+.++|++|+++|++++.++ ..|+||||+|+. .
T Consensus 256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD------~~G~TPLH~Aaa~~~ 329 (764)
T PHA02716 256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKD------SAGRTCLHQYILRHN 329 (764)
T ss_pred HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccC------CCCCCHHHHHHHHhC
Confidence 34578899999999999999887 699999999764 4
Q ss_pred CcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh------------------hHHHHHHHHHcCC-CCCCCchhhhhh
Q 001972 699 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA------------------AEKANETAAQIGV-QSDGPAAEQLSL 759 (988)
Q Consensus 699 G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~------------------~~~~v~~Lle~~a-~~~~~~~~~lsl 759 (988)
++.+++++|++.| ++++.++.. |.+|+..+ ..++++.|++.|+ ++.. .
T Consensus 330 ~~~eIVklLLe~G-----ADIN~kD~~-G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k-------n 396 (764)
T PHA02716 330 ISTDIIKLLHEYG-----NDLNEPDNI-GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-------N 396 (764)
T ss_pred CCchHHHHHHHcC-----CCCccCCCC-CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc-------C
Confidence 6889999999999 666777776 88887653 4689999999998 4443 2
Q ss_pred hhhhHHHhh
Q 001972 760 RGSLAAVRK 768 (988)
Q Consensus 760 kdsL~AvR~ 768 (988)
..+.++++.
T Consensus 397 ~~G~TPLh~ 405 (764)
T PHA02716 397 CLGYTPLTS 405 (764)
T ss_pred CCCCChHHH
Confidence 345555553
No 13
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.72 E-value=6.3e-17 Score=187.97 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=132.4
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHhCCCCCC-ccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcC
Q 001972 582 RDKLIQNLLRNRLCEWLVWKIHEGGKGPN-VIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 660 (988)
Q Consensus 582 ~~~lL~~al~~~l~e~Lv~~Lle~Gad~n-~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G 660 (988)
..+.||.|+..+..+ +++.|++.|..++ ..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus 68 ~~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 68 IESELHDAVEEGDVK-AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred cccHHHHHHHCCCHH-HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 356789899887655 4677888888764 56778999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHH
Q 001972 661 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANE 740 (988)
Q Consensus 661 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~ 740 (988)
+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++.+..+.+..... ...|+..+..++++
T Consensus 147 ~~~~v~~Ll~~g~~~~~~d------~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~-l~~A~~~~~~~iv~ 219 (413)
T PHA02875 147 DIKGIELLIDHKACLDIED------CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAA-LCYAIENNKIDIVR 219 (413)
T ss_pred CHHHHHHHHhcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchH-HHHHHHcCCHHHHH
Confidence 9999999999999998887 6999999999999999999999999955443322111111 22366677889999
Q ss_pred HHHHcCC
Q 001972 741 TAAQIGV 747 (988)
Q Consensus 741 ~Lle~~a 747 (988)
.|++.|+
T Consensus 220 ~Ll~~ga 226 (413)
T PHA02875 220 LFIKRGA 226 (413)
T ss_pred HHHHCCc
Confidence 9999998
No 14
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=169.52 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=128.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC--ChhhhHHHHhCCCCCCccC-CCCCcHhhHHHhc-
Q 001972 584 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG--YEWAMRPIIATGVSPNFRD-ARGRTALHWASYF- 659 (988)
Q Consensus 584 ~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G--~~~iV~~LL~~Gadvn~~D-~~G~TpLH~Aa~~- 659 (988)
+.|+.++..+..+ +++.|++. +|..|..|.||||+|+..+ +.+++++|+++|+++|.++ ..|+||||+|+..
T Consensus 23 ~pL~~A~~~~~~~-~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~ 98 (209)
T PHA02859 23 NPLFYYVEKDDIE-GVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFN 98 (209)
T ss_pred cHHHHHHHhCcHH-HHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhC
Confidence 4577777766554 44555553 5678899999999999865 8899999999999999997 4899999998864
Q ss_pred --CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHH--cCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHH--
Q 001972 660 --GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS--RGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL-- 733 (988)
Q Consensus 660 --G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~--~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~-- 733 (988)
++.+++++|+++|++++.++ ..|.||||+|+. .++.+++++|++.| ++++.++.. |.+|.+.
T Consensus 99 ~~~~~eiv~~Ll~~gadin~~d------~~G~TpLh~a~~~~~~~~~iv~~Li~~g-----adin~~d~~-g~t~Lh~~a 166 (209)
T PHA02859 99 KNVEPEILKILIDSGSSITEED------EDGKNLLHMYMCNFNVRINVIKLLIDSG-----VSFLNKDFD-NNNILYSYI 166 (209)
T ss_pred ccccHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHhccCCHHHHHHHHHcC-----CCcccccCC-CCcHHHHHH
Confidence 47999999999999999987 699999999876 47899999999999 566666666 7666653
Q ss_pred ---hhHHHHHHHHHcCC-CCCCCchhhhhhhhhhHHHhhh
Q 001972 734 ---AAEKANETAAQIGV-QSDGPAAEQLSLRGSLAAVRKS 769 (988)
Q Consensus 734 ---~~~~~v~~Lle~~a-~~~~~~~~~lslkdsL~AvR~a 769 (988)
+..+++++|++.++ ++.. ...+.+++..|
T Consensus 167 ~~~~~~~iv~~Ll~~Gadi~~~-------d~~g~tpl~la 199 (209)
T PHA02859 167 LFHSDKKIFDFLTSLGIDINET-------NKSGYNCYDLI 199 (209)
T ss_pred HhcCCHHHHHHHHHcCCCCCCC-------CCCCCCHHHHH
Confidence 35789999999997 3332 23455555544
No 15
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.71 E-value=6.2e-17 Score=165.43 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=110.2
Q ss_pred HHHHHHHHhhhHH---HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhh---hHHHHhCCCCCCccC-CCCCcHhhHH
Q 001972 584 KLIQNLLRNRLCE---WLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWA---MRPIIATGVSPNFRD-ARGRTALHWA 656 (988)
Q Consensus 584 ~lL~~al~~~l~e---~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~i---V~~LL~~Gadvn~~D-~~G~TpLH~A 656 (988)
..++.+++.+..+ .+++.|.+.|+.++..|..|+||||+||..|+.+. +++|+..|+++|.+| ..|.||||+|
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A 101 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA 101 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Confidence 3466677665543 34556778999999999999999999999998765 789999999999998 5899999999
Q ss_pred HhcCCHHHHHHHHH-cCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCC
Q 001972 657 SYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 716 (988)
Q Consensus 657 a~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~ 716 (988)
+..|+.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|+++|++.+.
T Consensus 102 ~~~g~~~iv~~Ll~~~gad~~~~d------~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~ 156 (166)
T PHA02743 102 ASTKNYELAEWLCRQLGVNLGAIN------YQHETAYHIAYKMRDRRMMEILRANGAVCDD 156 (166)
T ss_pred HHhCCHHHHHHHHhccCCCccCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999999999995 899998887 6999999999999999999999999955443
No 16
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=187.30 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=75.3
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCH
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 662 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 662 (988)
.+.||.|+..+..+ +++.|++.|+++|..|..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.
T Consensus 125 ~T~Lh~A~~~~~~~-~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~ 203 (434)
T PHA02874 125 KTFLHYAIKKGDLE-SIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDY 203 (434)
T ss_pred ccHHHHHHHCCCHH-HHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 34455555444332 23444455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhh-----HH
Q 001972 663 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA-----EK 737 (988)
Q Consensus 663 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~-----~~ 737 (988)
+++++|++.|++++..+ ..|.||||+|+..++ .++.+|+ .| .+++..+.. |.+|++.+. .+
T Consensus 204 ~iv~~Ll~~g~~i~~~~------~~g~TpL~~A~~~~~-~~i~~Ll-~~-----~~in~~d~~-G~TpLh~A~~~~~~~~ 269 (434)
T PHA02874 204 ACIKLLIDHGNHIMNKC------KNGFTPLHNAIIHNR-SAIELLI-NN-----ASINDQDID-GSTPLHHAINPPCDID 269 (434)
T ss_pred HHHHHHHhCCCCCcCCC------CCCCCHHHHHHHCCh-HHHHHHH-cC-----CCCCCcCCC-CCCHHHHHHhcCCcHH
Confidence 55555555555544443 345555555554433 2333333 23 234444444 555555442 35
Q ss_pred HHHHHHHcCC
Q 001972 738 ANETAAQIGV 747 (988)
Q Consensus 738 ~v~~Lle~~a 747 (988)
+++.|++.++
T Consensus 270 iv~~Ll~~ga 279 (434)
T PHA02874 270 IIDILLYHKA 279 (434)
T ss_pred HHHHHHHCcC
Confidence 6666666665
No 17
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=186.90 Aligned_cols=152 Identities=21% Similarity=0.208 Sum_probs=106.4
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCC-----------------------
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATG----------------------- 639 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~G----------------------- 639 (988)
.+.|+.|+..+..+ +++.|++.|+++|..+..|.||||+|+..|+.+++++|+++|
T Consensus 36 ~tpL~~A~~~g~~~-iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g 114 (434)
T PHA02874 36 TTPLIDAIRSGDAK-IVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG 114 (434)
T ss_pred CCHHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc
Confidence 45677777766443 446677777777777777778888888777777777776654
Q ss_pred CCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCC
Q 001972 640 VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSL 719 (988)
Q Consensus 640 advn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l 719 (988)
++++.+|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|+ ++
T Consensus 115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d------~~g~tpLh~A~~~~~~~iv~~Ll~~g~-----~~ 183 (434)
T PHA02874 115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED------DNGCYPIHIAIKHNFFDIIKLLLEKGA-----YA 183 (434)
T ss_pred CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC------CCCCCHHHHHHHCCcHHHHHHHHHCCC-----CC
Confidence 3456667777788888888888888888887777777766 577788888888788888888887773 33
Q ss_pred ccccCcchHH----HHHHhhHHHHHHHHHcCC
Q 001972 720 TVNENGMDNV----AAALAAEKANETAAQIGV 747 (988)
Q Consensus 720 ~~~d~~~g~t----aa~~~~~~~v~~Lle~~a 747 (988)
+..+.. |.+ |+..+..++++.|++.++
T Consensus 184 n~~~~~-g~tpL~~A~~~g~~~iv~~Ll~~g~ 214 (434)
T PHA02874 184 NVKDNN-GESPLHNAAEYGDYACIKLLIDHGN 214 (434)
T ss_pred CCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 444443 443 344445677777777776
No 18
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.71 E-value=1.9e-16 Score=184.02 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCC-ccCCCCCcHhhHHHhc
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPN-FRDARGRTALHWASYF 659 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn-~~D~~G~TpLH~Aa~~ 659 (988)
...++||.|+..+..+ +++.|++.|++++..+..|.||||+|+..|+.++|+.|++.|++++ ..+..|+||||+|+..
T Consensus 34 ~g~tpL~~A~~~~~~~-~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 112 (413)
T PHA02875 34 DGISPIKLAMKFRDSE-AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL 112 (413)
T ss_pred CCCCHHHHHHHcCCHH-HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh
Confidence 3456677777665443 5566777777777777777778888888888777877777777653 3456688888888888
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHH----Hhh
Q 001972 660 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA----LAA 735 (988)
Q Consensus 660 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~----~~~ 735 (988)
|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| .+++..+.. |.+|+. .+.
T Consensus 113 ~~~~iv~~Ll~~gad~~~~~------~~g~tpLh~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~-g~TpL~~A~~~g~ 180 (413)
T PHA02875 113 KKLDIMKLLIARGADPDIPN------TDKFSPLHLAVMMGDIKGIELLIDHK-----ACLDIEDCC-GCTPLIIAMAKGD 180 (413)
T ss_pred CCHHHHHHHHhCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHhcC-----CCCCCCCCC-CCCHHHHHHHcCC
Confidence 88888888888888887766 57888888888888888888888887 444555555 555444 445
Q ss_pred HHHHHHHHHcCC
Q 001972 736 EKANETAAQIGV 747 (988)
Q Consensus 736 ~~~v~~Lle~~a 747 (988)
.++++.|++.|+
T Consensus 181 ~eiv~~Ll~~ga 192 (413)
T PHA02875 181 IAICKMLLDSGA 192 (413)
T ss_pred HHHHHHHHhCCC
Confidence 677888888876
No 19
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.70 E-value=3.4e-17 Score=189.59 Aligned_cols=155 Identities=23% Similarity=0.223 Sum_probs=128.1
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhc
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVID-DGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 659 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D-~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~ 659 (988)
..-++||=|..+.- -.+++.|+++|+++|..+ ..|.|||||||+.|+..+|.+|+++||||+.+|..|.||||+||.+
T Consensus 77 ~g~tlLHWAAiNNr-l~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~ 155 (600)
T KOG0509|consen 77 EGVTLLHWAAINNR-LDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF 155 (600)
T ss_pred CCccceeHHHHcCc-HHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh
Confidence 44467775555442 235678889999999988 6799999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh----h
Q 001972 660 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----A 735 (988)
Q Consensus 660 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~----~ 735 (988)
|+.-+|.+||.+|++++.+| .+|+||||+|+.+|+...+..|+..| +++...|...|.||++.+ .
T Consensus 156 ~~~~~vayll~~~~d~d~~D------~~grTpLmwAaykg~~~~v~~LL~f~-----a~~~~~d~~~g~TpLHwa~~~gN 224 (600)
T KOG0509|consen 156 GHTALVAYLLSKGADIDLRD------NNGRTPLMWAAYKGFALFVRRLLKFG-----ASLLLTDDNHGNTPLHWAVVGGN 224 (600)
T ss_pred CchHHHHHHHHhcccCCCcC------CCCCCHHHHHHHhcccHHHHHHHHhc-----ccccccccccCCchHHHHHhcCC
Confidence 99999999999999999988 69999999999999998899999999 555555522266666555 5
Q ss_pred HHHHHHHHHcCC
Q 001972 736 EKANETAAQIGV 747 (988)
Q Consensus 736 ~~~v~~Lle~~a 747 (988)
..++..|++.++
T Consensus 225 ~~~v~Ll~~g~~ 236 (600)
T KOG0509|consen 225 LTAVKLLLEGGA 236 (600)
T ss_pred cceEehhhhcCC
Confidence 567775544444
No 20
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.70 E-value=6.8e-16 Score=194.31 Aligned_cols=150 Identities=16% Similarity=0.155 Sum_probs=128.9
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCH
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 662 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 662 (988)
...|+.++..+.. .+++.|++.|+++|..|..|+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..||.
T Consensus 526 ~~~L~~Aa~~g~~-~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~ 604 (823)
T PLN03192 526 ASNLLTVASTGNA-ALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH 604 (823)
T ss_pred hhHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 4556666666644 456778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHH----hhHHH
Q 001972 663 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL----AAEKA 738 (988)
Q Consensus 663 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~----~~~~~ 738 (988)
+++++|+..++..+. ..|.+|||+|+..|+.+++++|+++| ++++..+.. |.+|++. ++.++
T Consensus 605 ~iv~~L~~~~~~~~~--------~~~~~~L~~Aa~~g~~~~v~~Ll~~G-----adin~~d~~-G~TpLh~A~~~g~~~i 670 (823)
T PLN03192 605 KIFRILYHFASISDP--------HAAGDLLCTAAKRNDLTAMKELLKQG-----LNVDSEDHQ-GATALQVAMAEDHVDM 670 (823)
T ss_pred HHHHHHHhcCcccCc--------ccCchHHHHHHHhCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCcHHH
Confidence 999999988776543 35779999999999999999999999 455556665 6655544 57899
Q ss_pred HHHHHHcCC
Q 001972 739 NETAAQIGV 747 (988)
Q Consensus 739 v~~Lle~~a 747 (988)
++.|++.++
T Consensus 671 v~~Ll~~GA 679 (823)
T PLN03192 671 VRLLIMNGA 679 (823)
T ss_pred HHHHHHcCC
Confidence 999999998
No 21
>PHA02798 ankyrin-like protein; Provisional
Probab=99.70 E-value=2e-16 Score=188.07 Aligned_cols=177 Identities=12% Similarity=0.011 Sum_probs=141.9
Q ss_pred hhhHHHHHHHHh----hhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC---ChhhhHHHHhCCCCCCccCCCCCcHh
Q 001972 581 SRDKLIQNLLRN----RLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG---YEWAMRPIIATGVSPNFRDARGRTAL 653 (988)
Q Consensus 581 ~~~~lL~~al~~----~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G---~~~iV~~LL~~Gadvn~~D~~G~TpL 653 (988)
...+.|+.++.. .....+++.|+++|+++|..|..|.||||+|+..| +.+++++|+++|++++.+|..|.|||
T Consensus 70 ~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL 149 (489)
T PHA02798 70 EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML 149 (489)
T ss_pred CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHH
Confidence 345667666543 12356788899999999999999999999999986 67999999999999999999999999
Q ss_pred hHHHhcCC---HHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHc----CcHHHHHHHHHccCCCCC----------
Q 001972 654 HWASYFGR---EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR----GHKGIAGYLAEADLSSHL---------- 716 (988)
Q Consensus 654 H~Aa~~G~---~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~----G~~eiv~~Lle~Ga~~~~---------- 716 (988)
|+|+..|+ .+++++|+++|++++..++ ..|.||||.++.. ++.+++++|+++|++.+.
T Consensus 150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~-----~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~ 224 (489)
T PHA02798 150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNN-----KEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM 224 (489)
T ss_pred HHHHHcCCcchHHHHHHHHHhCCCcccccC-----cCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHH
Confidence 99999998 9999999999999998864 5799999998764 478999999999976543
Q ss_pred ------------------------CCCccccCcchHHHHHHh----hHHHHHHHHHcCC-CCCCCchhhhhhhhhhHHHh
Q 001972 717 ------------------------SSLTVNENGMDNVAAALA----AEKANETAAQIGV-QSDGPAAEQLSLRGSLAAVR 767 (988)
Q Consensus 717 ------------------------~~l~~~d~~~g~taa~~~----~~~~v~~Lle~~a-~~~~~~~~~lslkdsL~AvR 767 (988)
.+++.++.. |.||+..+ ..++++.|++.|+ ++.. ...+.+++.
T Consensus 225 ~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~-G~TPL~~A~~~~~~~~v~~LL~~GAdin~~-------d~~G~TpL~ 296 (489)
T PHA02798 225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDEL-GFNPLYYSVSHNNRKIFEYLLQLGGDINII-------TELGNTCLF 296 (489)
T ss_pred HHHHHHHhhcccchHHHHHHHHhcCCCCCcCcC-CccHHHHHHHcCcHHHHHHHHHcCCccccc-------CCCCCcHHH
Confidence 245556666 77777665 6789999999998 4433 234455555
Q ss_pred hhh
Q 001972 768 KSA 770 (988)
Q Consensus 768 ~a~ 770 (988)
.|.
T Consensus 297 ~A~ 299 (489)
T PHA02798 297 TAF 299 (489)
T ss_pred HHH
Confidence 443
No 22
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=187.87 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=113.4
Q ss_pred hhHHHHHHHHhhh-HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCC------CcHhh
Q 001972 582 RDKLIQNLLRNRL-CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG------RTALH 654 (988)
Q Consensus 582 ~~~lL~~al~~~l-~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G------~TpLH 654 (988)
..++||.|+..+. ...+++.|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++..+..| .||||
T Consensus 141 g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~ 220 (480)
T PHA03100 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLH 220 (480)
T ss_pred CCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHH
Confidence 4566777776652 3445666777788887777778888888888888888888888888888777777 77888
Q ss_pred HHHhcCC--HHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHH
Q 001972 655 WASYFGR--EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 732 (988)
Q Consensus 655 ~Aa~~G~--~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~ 732 (988)
+|+..|+ .+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.+|..
T Consensus 221 ~a~~~~~~~~~iv~~Ll~~g~din~~d------~~g~TpL~~A~~~~~~~iv~~Ll~~g-----ad~n~~d~~-g~tpl~ 288 (480)
T PHA03100 221 IAACYNEITLEVVNYLLSYGVPINIKD------VYGFTPLHYAVYNNNPEFVKYLLDLG-----ANPNLVNKY-GDTPLH 288 (480)
T ss_pred HHHHhCcCcHHHHHHHHHcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCC-CCcHHH
Confidence 8888877 788888888888777766 57888888888888888888888888 455555555 555544
Q ss_pred H----hhHHHHHHHHHcCC
Q 001972 733 L----AAEKANETAAQIGV 747 (988)
Q Consensus 733 ~----~~~~~v~~Lle~~a 747 (988)
. +..++++.|++.++
T Consensus 289 ~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 289 IAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred HHHHhCCHHHHHHHHhcCC
Confidence 4 35677778877775
No 23
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.70 E-value=2.5e-16 Score=186.24 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=113.4
Q ss_pred hHHHHH-----HHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHH--HcCChhhhHHHHhCCCCCCccCCCCCcHhhH
Q 001972 583 DKLIQN-----LLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAA--ALGYEWAMRPIIATGVSPNFRDARGRTALHW 655 (988)
Q Consensus 583 ~~lL~~-----al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA--~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~ 655 (988)
.++++. ++..+. ..+++.|++.|++++..|..|.||||+|+ ..|+.+++++|++.|++++..|..|.||||+
T Consensus 69 ~t~L~~~~~~~a~~~~~-~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~ 147 (480)
T PHA03100 69 STPLHYLSNIKYNLTDV-KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147 (480)
T ss_pred cCHHHHHHHHHHHhhch-HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 355666 666553 34567777888888888888888888888 8888888888888888888888888888888
Q ss_pred HHhcC--CHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcch------
Q 001972 656 ASYFG--REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMD------ 727 (988)
Q Consensus 656 Aa~~G--~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g------ 727 (988)
|+..| +.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++.. ..+.. |
T Consensus 148 A~~~~~~~~~iv~~Ll~~g~din~~d------~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~-----~~~~~-~~~~~~~ 215 (480)
T PHA03100 148 YLESNKIDLKILKLLIDKGVDINAKN------RYGYTPLHIAVEKGNIDVIKFLLDNGADIN-----AGDIE-TLLFTIF 215 (480)
T ss_pred HHHcCCChHHHHHHHHHCCCCccccc------CCCCCHHHHHHHhCCHHHHHHHHHcCCCcc-----CCCCC-CCcHHHH
Confidence 88888 8888888888888887776 578888888888888888888888884433 33322 2
Q ss_pred H----HHHHHhh--HHHHHHHHHcCC
Q 001972 728 N----VAAALAA--EKANETAAQIGV 747 (988)
Q Consensus 728 ~----taa~~~~--~~~v~~Lle~~a 747 (988)
. .|+..+. .++++.|++.|+
T Consensus 216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~ 241 (480)
T PHA03100 216 ETPLHIAACYNEITLEVVNYLLSYGV 241 (480)
T ss_pred HhHHHHHHHhCcCcHHHHHHHHHcCC
Confidence 2 3344445 778888888876
No 24
>PHA03095 ankyrin-like protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=185.88 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=127.7
Q ss_pred hhhHHHHHHHHhh--hHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC-ChhhhHHHHhCCCCCCccCCCCCcHhhHHH
Q 001972 581 SRDKLIQNLLRNR--LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG-YEWAMRPIIATGVSPNFRDARGRTALHWAS 657 (988)
Q Consensus 581 ~~~~lL~~al~~~--l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G-~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa 657 (988)
...+.||.++..+ ....+++.|++.|+++|.+|..|.||||+|+..| ..+++++|+++|+++|.+|..|.||||+|+
T Consensus 46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~ 125 (471)
T PHA03095 46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL 125 (471)
T ss_pred CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 3457788888765 3556778899999999999999999999999999 599999999999999999999999999999
Q ss_pred --hcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHHHccCCCCCCCCccccCcchHHHHHH
Q 001972 658 --YFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG--HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL 733 (988)
Q Consensus 658 --~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G--~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~ 733 (988)
..++.+++++|+++|++++..+ ..|.||||+|+..+ +.+++++|++.|++ ++..+.. |.++.+.
T Consensus 126 ~~~~~~~~iv~~Ll~~gad~~~~d------~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~-----~~~~d~~-g~t~Lh~ 193 (471)
T PHA03095 126 SGFNINPKVIRLLLRKGADVNALD------LYGMTPLAVLLKSRNANVELLRLLIDAGAD-----VYAVDDR-FRSLLHH 193 (471)
T ss_pred hCCcCCHHHHHHHHHcCCCCCccC------CCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-----CcccCCC-CCCHHHH
Confidence 5678999999999999998887 68999999988765 67899999999944 3334444 6666554
Q ss_pred h------hHHHHHHHHHcCC
Q 001972 734 A------AEKANETAAQIGV 747 (988)
Q Consensus 734 ~------~~~~v~~Lle~~a 747 (988)
+ ....++.|++.++
T Consensus 194 ~~~~~~~~~~i~~~Ll~~g~ 213 (471)
T PHA03095 194 HLQSFKPRARIVRELIRAGC 213 (471)
T ss_pred HHHHCCCcHHHHHHHHHcCC
Confidence 3 4567888888887
No 25
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.69 E-value=3.1e-16 Score=186.79 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=134.9
Q ss_pred hHHHHHHHHhh-----hHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHc---CChhhhHHHHhCCCCC-CccCCCCCcHh
Q 001972 583 DKLIQNLLRNR-----LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAAL---GYEWAMRPIIATGVSP-NFRDARGRTAL 653 (988)
Q Consensus 583 ~~lL~~al~~~-----l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~---G~~~iV~~LL~~Gadv-n~~D~~G~TpL 653 (988)
.+.|+.++... -...+++.|+++|+++|.+|..|.||||.|+.. |+.++|++|+++|||+ +.+|..|+|||
T Consensus 70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpL 149 (494)
T PHA02989 70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL 149 (494)
T ss_pred CCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHH
Confidence 45666665432 134578889999999999999999999988765 6789999999999999 89999999999
Q ss_pred hHHHhc--CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcC----cHHHHHHHHHccCCCCCCC---------
Q 001972 654 HWASYF--GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG----HKGIAGYLAEADLSSHLSS--------- 718 (988)
Q Consensus 654 H~Aa~~--G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G----~~eiv~~Lle~Ga~~~~~~--------- 718 (988)
|+|+.. ++.++|++|+++|++++...+ ..|.||||+|+..+ +.+++++|+++|++.+..+
T Consensus 150 h~a~~~~~~~~~iv~~Ll~~Gadi~~~~~-----~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~ 224 (494)
T PHA02989 150 HMYLESFSVKKDVIKILLSFGVNLFEKTS-----LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLES 224 (494)
T ss_pred HHHHHhccCCHHHHHHHHHcCCCcccccc-----ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHH
Confidence 998754 689999999999999987432 68999999998764 8899999999998765433
Q ss_pred ------------------------CccccCcchHHHHHHh----hHHHHHHHHHcCC-CCCCCchhhhhhhhhhHHHhhh
Q 001972 719 ------------------------LTVNENGMDNVAAALA----AEKANETAAQIGV-QSDGPAAEQLSLRGSLAAVRKS 769 (988)
Q Consensus 719 ------------------------l~~~d~~~g~taa~~~----~~~~v~~Lle~~a-~~~~~~~~~lslkdsL~AvR~a 769 (988)
++.++.. |.||+..+ ..++++.|++.|+ ++.. .+++.++++.|
T Consensus 225 ~~~~~~~~~~~~~~il~~l~~~advn~~d~~-G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~-------d~~G~TpL~~A 296 (494)
T PHA02989 225 FLDNNKILSKKEFKVLNFILKYIKINKKDKK-GFNPLLISAKVDNYEAFNYLLKLGDDIYNV-------SKDGDTVLTYA 296 (494)
T ss_pred HHHhchhhcccchHHHHHHHhCCCCCCCCCC-CCCHHHHHHHhcCHHHHHHHHHcCCCcccc-------CCCCCCHHHHH
Confidence 3455555 66665544 5678888888887 4333 23445555544
Q ss_pred h
Q 001972 770 A 770 (988)
Q Consensus 770 ~ 770 (988)
.
T Consensus 297 ~ 297 (494)
T PHA02989 297 I 297 (494)
T ss_pred H
Confidence 3
No 26
>PHA03095 ankyrin-like protein; Provisional
Probab=99.68 E-value=2.8e-16 Score=185.22 Aligned_cols=140 Identities=17% Similarity=0.146 Sum_probs=125.3
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC---ChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcC-CHHHHHHHHHc
Q 001972 596 EWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG---YEWAMRPIIATGVSPNFRDARGRTALHWASYFG-REETVIMLVKL 671 (988)
Q Consensus 596 e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G---~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G-~~eiV~~LL~~ 671 (988)
..+++.|++.|+++|..|..|.||||+|+..| +.+++++|++.|+++|.+|..|+||||+|+..| +.+++++|+++
T Consensus 27 ~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ 106 (471)
T PHA03095 27 VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106 (471)
T ss_pred HHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc
Confidence 34567888999999999999999999999999 999999999999999999999999999999999 59999999999
Q ss_pred CCCCCccCCCCCCCCCCCcHHHHHH--HcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh------hHHHHHHHH
Q 001972 672 GAAPGAVEDPTPAFPGGQTAADLAS--SRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA------AEKANETAA 743 (988)
Q Consensus 672 GAd~n~~dd~~~~d~~G~TPLhlAa--~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~------~~~~v~~Ll 743 (988)
|++++..+ ..|.||||+|+ ..++.+++++|++.| ++++..+.. |.+|...+ ..++++.|+
T Consensus 107 ga~in~~~------~~g~tpLh~a~~~~~~~~~iv~~Ll~~g-----ad~~~~d~~-g~tpL~~a~~~~~~~~~iv~~Ll 174 (471)
T PHA03095 107 GADVNAKD------KVGRTPLHVYLSGFNINPKVIRLLLRKG-----ADVNALDLY-GMTPLAVLLKSRNANVELLRLLI 174 (471)
T ss_pred CCCCCCCC------CCCCCHHHHHhhCCcCCHHHHHHHHHcC-----CCCCccCCC-CCCHHHHHHHcCCCCHHHHHHHH
Confidence 99999988 68999999999 567899999999999 556666666 77777644 367899999
Q ss_pred HcCC
Q 001972 744 QIGV 747 (988)
Q Consensus 744 e~~a 747 (988)
+.++
T Consensus 175 ~~g~ 178 (471)
T PHA03095 175 DAGA 178 (471)
T ss_pred HcCC
Confidence 9987
No 27
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.67 E-value=3.4e-16 Score=191.03 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=129.7
Q ss_pred hHHHHHHHHHhCC-CCCCcc-CCCCCcHHHHHHHc--CChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCC--HHHHHH
Q 001972 594 LCEWLVWKIHEGG-KGPNVI-DDGGQGVVHLAAAL--GYEWAMRPIIATGVSPNFRDARGRTALHWASYFGR--EETVIM 667 (988)
Q Consensus 594 l~e~Lv~~Lle~G-ad~n~~-D~~G~TpLH~AA~~--G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~--~eiV~~ 667 (988)
....+++.|++.| +++|.. |..|.||||+|+.. ++.++|++|+++|+++|.+|..|+||||+|+..|+ .++|++
T Consensus 153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl 232 (764)
T PHA02716 153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK 232 (764)
T ss_pred CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence 3456778888999 999998 89999999998754 57899999999999999999999999999999995 589999
Q ss_pred HHHcCCCCCccCCCCCCCCCCCcHHHHH-------------------------------------HHcCcHHHHHHHHHc
Q 001972 668 LVKLGAAPGAVEDPTPAFPGGQTAADLA-------------------------------------SSRGHKGIAGYLAEA 710 (988)
Q Consensus 668 LL~~GAd~n~~dd~~~~d~~G~TPLhlA-------------------------------------a~~G~~eiv~~Lle~ 710 (988)
|+++||+++.++ ..|.||||+| +..|+.+++++|++.
T Consensus 233 LLe~GADVN~kD------~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~ 306 (764)
T PHA02716 233 IIELGGDMDMKC------VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP 306 (764)
T ss_pred HHHcCCCCCCCC------CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence 999999999987 6999999975 345778899999999
Q ss_pred cCCCCCCCCccccCcchHHHHHHh------hHHHHHHHHHcCC-CCCCCchhhhhhhhhhHHHhhh
Q 001972 711 DLSSHLSSLTVNENGMDNVAAALA------AEKANETAAQIGV-QSDGPAAEQLSLRGSLAAVRKS 769 (988)
Q Consensus 711 Ga~~~~~~l~~~d~~~g~taa~~~------~~~~v~~Lle~~a-~~~~~~~~~lslkdsL~AvR~a 769 (988)
| ++++.++.. |.+|++.+ ..++++.|++.++ ++.. ...+.++++.|
T Consensus 307 G-----AdIN~kD~~-G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~k-------D~~G~TPLH~A 359 (764)
T PHA02716 307 G-----VKLHYKDSA-GRTCLHQYILRHNISTDIIKLLHEYGNDLNEP-------DNIGNTVLHTY 359 (764)
T ss_pred C-----CceeccCCC-CCCHHHHHHHHhCCCchHHHHHHHcCCCCccC-------CCCCCCHHHHH
Confidence 9 567777777 88887753 3579999999998 4333 23445555544
No 28
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.67 E-value=6.8e-16 Score=190.80 Aligned_cols=172 Identities=21% Similarity=0.171 Sum_probs=132.7
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC-ChhhhHHHHhCCCCCCccCCCCCcHhhHHHhc
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG-YEWAMRPIIATGVSPNFRDARGRTALHWASYF 659 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G-~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~ 659 (988)
...+.||.|+..+....++..|++.|+++|..|..|.||||+|+..| ..++++.|+..|++++..|..|+||||+|+..
T Consensus 272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~ 351 (682)
T PHA02876 272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351 (682)
T ss_pred CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence 34577888887766666778888888888888888899999988888 47888888888888888888888999888875
Q ss_pred -CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhh---
Q 001972 660 -GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA--- 735 (988)
Q Consensus 660 -G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~--- 735 (988)
++.+++.+|++.|++++.++ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.+|+..+.
T Consensus 352 ~~~~~iv~lLl~~gadin~~d------~~G~TpLh~Aa~~~~~~iv~~Ll~~g-----ad~~~~~~~-g~T~Lh~A~~~~ 419 (682)
T PHA02876 352 DRNKDIVITLLELGANVNARD------YCDKTPIHYAAVRNNVVIINTLLDYG-----ADIEALSQK-IGTALHFALCGT 419 (682)
T ss_pred CCcHHHHHHHHHcCCCCccCC------CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCccccCCC-CCchHHHHHHcC
Confidence 46788888888888888877 58888999888888888888888888 445555555 666666553
Q ss_pred --HHHHHHHHHcCC-CCCCCchhhhhhhhhhHHHhhhhh
Q 001972 736 --EKANETAAQIGV-QSDGPAAEQLSLRGSLAAVRKSAH 771 (988)
Q Consensus 736 --~~~v~~Lle~~a-~~~~~~~~~lslkdsL~AvR~a~~ 771 (988)
...++.|++.++ ++.. ..++.++++.|+.
T Consensus 420 ~~~~~vk~Ll~~gadin~~-------d~~G~TpLh~Aa~ 451 (682)
T PHA02876 420 NPYMSVKTLIDRGANVNSK-------NKDLSTPLHYACK 451 (682)
T ss_pred CHHHHHHHHHhCCCCCCcC-------CCCCChHHHHHHH
Confidence 355778888876 3332 3456677776654
No 29
>PHA02798 ankyrin-like protein; Provisional
Probab=99.67 E-value=5.3e-16 Score=184.57 Aligned_cols=144 Identities=15% Similarity=0.107 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHc-----CChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcC---CHHH
Q 001972 593 RLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAAL-----GYEWAMRPIIATGVSPNFRDARGRTALHWASYFG---REET 664 (988)
Q Consensus 593 ~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~-----G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G---~~ei 664 (988)
.....+++.|+++|+++|..|..|.||||+|+.. +..+++++|+++|+|+|.+|..|+||||+|+..| +.++
T Consensus 48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i 127 (489)
T PHA02798 48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI 127 (489)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence 3355678889999999999999999999998764 6789999999999999999999999999999875 7899
Q ss_pred HHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCc---HHHHHHHHHccCCCCCCCCccccCcchHHHHHH--------
Q 001972 665 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH---KGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL-------- 733 (988)
Q Consensus 665 V~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~---~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~-------- 733 (988)
+++|+++||+++..+ ..|.||||+|+..|+ .+++++|++.|+ +++..+...|.+|...
T Consensus 128 v~~Ll~~Gadvn~~d------~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga-----din~~~~~~~~t~Lh~~~~~~~~~ 196 (489)
T PHA02798 128 LLFMIENGADTTLLD------KDGFTMLQVYLQSNHHIDIEIIKLLLEKGV-----DINTHNNKEKYDTLHCYFKYNIDR 196 (489)
T ss_pred HHHHHHcCCCccccC------CCCCcHHHHHHHcCCcchHHHHHHHHHhCC-----CcccccCcCCCcHHHHHHHhcccc
Confidence 999999999999988 699999999999998 999999999994 4444433214455432
Q ss_pred hhHHHHHHHHHcCC
Q 001972 734 AAEKANETAAQIGV 747 (988)
Q Consensus 734 ~~~~~v~~Lle~~a 747 (988)
+..++++.|++.|+
T Consensus 197 ~~~~ivk~Li~~Ga 210 (489)
T PHA02798 197 IDADILKLFVDNGF 210 (489)
T ss_pred CCHHHHHHHHHCCC
Confidence 25789999999998
No 30
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-16 Score=177.18 Aligned_cols=141 Identities=19% Similarity=0.135 Sum_probs=122.0
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCC
Q 001972 595 CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA 674 (988)
Q Consensus 595 ~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd 674 (988)
+-.+++.|+++|+++|.......|||--||.-|+.++|++|+++|+|++..|..|.|.||+||..||.+|+++|++.|||
T Consensus 96 Hl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD 175 (615)
T KOG0508|consen 96 HLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD 175 (615)
T ss_pred cHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC
Confidence 34567889999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHHHHHH
Q 001972 675 PGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQ 744 (988)
Q Consensus 675 ~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~~Lle 744 (988)
+|.++ ..|.|+||.++..|+.+++++|+.+|+....... .-.+...|+..|+.++|+.|+.
T Consensus 176 vn~ks------~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~---GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 176 VNAKS------YKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGH---GMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred cchhc------ccCchHHHhhhhcccHHHHHHHHhCCceeeecCC---CCchHHHHhhhcchHHHHHHhc
Confidence 99988 6999999999999999999999999954333222 1111335667778899999885
No 31
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.66 E-value=6.8e-16 Score=183.85 Aligned_cols=160 Identities=11% Similarity=0.024 Sum_probs=131.8
Q ss_pred hhHHHHHHHHhh--hHHHHHHHHHhCCCCC-CccCCCCCcHHHHHHHc--CChhhhHHHHhCCCCCCc-cCCCCCcHhhH
Q 001972 582 RDKLIQNLLRNR--LCEWLVWKIHEGGKGP-NVIDDGGQGVVHLAAAL--GYEWAMRPIIATGVSPNF-RDARGRTALHW 655 (988)
Q Consensus 582 ~~~lL~~al~~~--l~e~Lv~~Lle~Gad~-n~~D~~G~TpLH~AA~~--G~~~iV~~LL~~Gadvn~-~D~~G~TpLH~ 655 (988)
..+.|+.++... -...+++.|+++|+++ +..|..|.||||+|+.. ++.++|++|+++|++++. .+..|.||||+
T Consensus 108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~ 187 (494)
T PHA02989 108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI 187 (494)
T ss_pred CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence 356677665432 1346788899999999 89999999999998764 688999999999999998 68889999999
Q ss_pred HHhc----CCHHHHHHHHHcCCCCCccCC--------------------------------CCCCCCCCCcHHHHHHHcC
Q 001972 656 ASYF----GREETVIMLVKLGAAPGAVED--------------------------------PTPAFPGGQTAADLASSRG 699 (988)
Q Consensus 656 Aa~~----G~~eiV~~LL~~GAd~n~~dd--------------------------------~~~~d~~G~TPLhlAa~~G 699 (988)
|+.. ++.++|++|++.|++++..+. ++.+|..|.||||+|+..|
T Consensus 188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~ 267 (494)
T PHA02989 188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD 267 (494)
T ss_pred HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence 9875 489999999999999887652 3456788999999999999
Q ss_pred cHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh----hHHHHHHHHHcCC
Q 001972 700 HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV 747 (988)
Q Consensus 700 ~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~----~~~~v~~Lle~~a 747 (988)
+.+++++|++.| ++++..+.. |.||+..+ ..++|+.|++..+
T Consensus 268 ~~~~v~~LL~~G-----adin~~d~~-G~TpL~~A~~~~~~~iv~~LL~~~p 313 (494)
T PHA02989 268 NYEAFNYLLKLG-----DDIYNVSKD-GDTVLTYAIKHGNIDMLNRILQLKP 313 (494)
T ss_pred CHHHHHHHHHcC-----CCccccCCC-CCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 999999999999 566666666 77666554 6788899988764
No 32
>PHA02946 ankyin-like protein; Provisional
Probab=99.66 E-value=6.5e-16 Score=181.59 Aligned_cols=171 Identities=10% Similarity=0.037 Sum_probs=136.9
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC--hhhhHHHHhCCCCCCc-cCCCCCcHhhH
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGY--EWAMRPIIATGVSPNF-RDARGRTALHW 655 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~--~~iV~~LL~~Gadvn~-~D~~G~TpLH~ 655 (988)
+....+.||.|+..+. ..+++.|+++|+++|.+|..|+||||+|+..+. .+++++|+.+|+++|. .|..|.||||
T Consensus 69 d~~G~TpLh~Aa~~g~-~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~- 146 (446)
T PHA02946 69 DDDGNYPLHIASKINN-NRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL- 146 (446)
T ss_pred CCCCCCHHHHHHHcCC-HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence 3445688999998874 456788999999999999999999999988764 6889999999999995 6889999997
Q ss_pred HHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHHHccCCCCCCCCccccCcchHHHHHH
Q 001972 656 ASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG--HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL 733 (988)
Q Consensus 656 Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G--~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~ 733 (988)
||..|+.+++++|++.|++++..+ ..|+||||+|+..+ +.+++++|++.| ++++.++.. |.||++.
T Consensus 147 aa~~~~~~vv~~Ll~~gad~~~~d------~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-----adin~~d~~-G~TpLH~ 214 (446)
T PHA02946 147 ACTDPSERVFKKIMSIGFEARIVD------KFGKNHIHRHLMSDNPKASTISWMMKLG-----ISPSKPDHD-GNTPLHI 214 (446)
T ss_pred HHHCCChHHHHHHHhccccccccC------CCCCCHHHHHHHhcCCCHHHHHHHHHcC-----CCCcccCCC-CCCHHHH
Confidence 677799999999999999999887 69999999988754 468999999999 667777777 8888887
Q ss_pred hh------HHHHHHHHHcCC-CCCCCchhhhhhhhhhHHHhhhhh
Q 001972 734 AA------EKANETAAQIGV-QSDGPAAEQLSLRGSLAAVRKSAH 771 (988)
Q Consensus 734 ~~------~~~v~~Lle~~a-~~~~~~~~~lslkdsL~AvR~a~~ 771 (988)
+. .++++.|+. ++ .+.. ..++.++++.|+.
T Consensus 215 Aa~~~~~~~~iv~lLl~-gadin~~-------d~~G~TpLh~A~~ 251 (446)
T PHA02946 215 VCSKTVKNVDIINLLLP-STDVNKQ-------NKFGDSPLTLLIK 251 (446)
T ss_pred HHHcCCCcHHHHHHHHc-CCCCCCC-------CCCCCCHHHHHHH
Confidence 64 356777764 55 3333 3455566665544
No 33
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.64 E-value=2.1e-15 Score=167.32 Aligned_cols=151 Identities=12% Similarity=0.026 Sum_probs=119.6
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccC----CCCCcHHHHHHHcCChhhhHHHHhCCCCCCcc-CCCCCcHh
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVID----DGGQGVVHLAAALGYEWAMRPIIATGVSPNFR-DARGRTAL 653 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D----~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~-D~~G~TpL 653 (988)
......+|+.+++.+. ..+++.|+++|+++|.++ ..|.||||+|+..|+.+++++|+++||++|.+ +..|.|||
T Consensus 30 ~~~~~~lL~~A~~~~~-~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL 108 (300)
T PHA02884 30 KICIANILYSSIKFHY-TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL 108 (300)
T ss_pred cCCCCHHHHHHHHcCC-HHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence 3445567888887653 446788899999999874 58999999999999999999999999999986 45799999
Q ss_pred hHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHH
Q 001972 654 HWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL 733 (988)
Q Consensus 654 H~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~ 733 (988)
|+|+..|+.+++++|+.+|++++.++ ..|.||||+|+..++..++.++...+. +.. +.+|...
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd------~~G~TpL~~A~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~ 171 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQT------NDMVTPIELALMICNNFLAFMICDNEI-------SNF----YKHPKKI 171 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHhCChhHHHHhcCCcc-------ccc----ccChhhh
Confidence 99999999999999999999999987 689999999999999888866654331 111 1122221
Q ss_pred -hhHHHHHHHHHcCC
Q 001972 734 -AAEKANETAAQIGV 747 (988)
Q Consensus 734 -~~~~~v~~Lle~~a 747 (988)
+..++++.|+.++.
T Consensus 172 ~~n~ei~~~Lish~v 186 (300)
T PHA02884 172 LINFDILKILVSHFI 186 (300)
T ss_pred hccHHHHHHHHHHHH
Confidence 24677788877763
No 34
>PHA02795 ankyrin-like protein; Provisional
Probab=99.63 E-value=2.4e-15 Score=173.18 Aligned_cols=154 Identities=14% Similarity=0.011 Sum_probs=130.6
Q ss_pred hhhhHHHHHHHHhh-hHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccC------CCCCcH
Q 001972 580 NSRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD------ARGRTA 652 (988)
Q Consensus 580 ~~~~~lL~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D------~~G~Tp 652 (988)
+..+++||.++..+ ....+++.|+++|++++.. ++.||||+|+..|+.+++++|+.+|++.+... ..|.||
T Consensus 114 ~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~ 191 (437)
T PHA02795 114 NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR 191 (437)
T ss_pred ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence 44678899888822 2556788999999999985 45899999999999999999999998543222 348899
Q ss_pred hhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHH
Q 001972 653 LHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 732 (988)
Q Consensus 653 LH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~ 732 (988)
+|.|+..++.+++++|+++||++|.++ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.+|+.
T Consensus 192 l~~a~~~~~~eIve~LIs~GADIN~kD------~~G~TpLh~Aa~~g~~eiVelLL~~G-----AdIN~~d~~-G~TpLh 259 (437)
T PHA02795 192 GFLVDEPTVLEIYKLCIPYIEDINQLD------AGGRTLLYRAIYAGYIDLVSWLLENG-----ANVNAVMSN-GYTCLD 259 (437)
T ss_pred hHHHHhcCHHHHHHHHHhCcCCcCcCC------CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCC-CCCHHH
Confidence 999999999999999999999999988 69999999999999999999999999 666777776 777776
Q ss_pred Hhh------------HHHHHHHHHcCC
Q 001972 733 LAA------------EKANETAAQIGV 747 (988)
Q Consensus 733 ~~~------------~~~v~~Lle~~a 747 (988)
.+. .++++.|++.++
T Consensus 260 ~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 260 VAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred HHHHcCCcccccccHHHHHHHHHhCCC
Confidence 653 478999999886
No 35
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.63 E-value=2.8e-15 Score=185.31 Aligned_cols=155 Identities=16% Similarity=0.090 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC-ChhhhHHHHhCCCCCCccCCCCCcHhhHHHhc
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG-YEWAMRPIIATGVSPNFRDARGRTALHWASYF 659 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G-~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~ 659 (988)
...+.|+.|+..+....+++.|+..|+++|..|..|.||||+|+..+ +.+++.+|+..|+++|.+|..|.||||+|+..
T Consensus 306 ~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~ 385 (682)
T PHA02876 306 KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVR 385 (682)
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHc
Confidence 34567888877765455667788888888888888889998888754 67788888888888888888888999998888
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCc-HHHHHHHHHccCCCCCCCCccccCcchHHHHHHhh---
Q 001972 660 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH-KGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA--- 735 (988)
Q Consensus 660 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~-~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~--- 735 (988)
|+.+++++|+++|++++..+ ..|.||||+|+..++ ..++++|++.| ++++.++.. |.||+..+.
T Consensus 386 ~~~~iv~~Ll~~gad~~~~~------~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-----adin~~d~~-G~TpLh~Aa~~~ 453 (682)
T PHA02876 386 NNVVIINTLLDYGADIEALS------QKIGTALHFALCGTNPYMSVKTLIDRG-----ANVNSKNKD-LSTPLHYACKKN 453 (682)
T ss_pred CCHHHHHHHHHCCCCccccC------CCCCchHHHHHHcCCHHHHHHHHHhCC-----CCCCcCCCC-CChHHHHHHHhC
Confidence 88888888888888888877 578888888887655 46788888888 667777776 888777653
Q ss_pred --HHHHHHHHHcCC
Q 001972 736 --EKANETAAQIGV 747 (988)
Q Consensus 736 --~~~v~~Lle~~a 747 (988)
.++++.|++.|+
T Consensus 454 ~~~~iv~lLl~~Ga 467 (682)
T PHA02876 454 CKLDVIEMLLDNGA 467 (682)
T ss_pred CcHHHHHHHHHCCC
Confidence 467888888887
No 36
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=155.25 Aligned_cols=132 Identities=22% Similarity=0.231 Sum_probs=113.7
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCCh----hhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHH---HHHHHHcCCCCCc
Q 001972 605 GGKGPNVIDDGGQGVVHLAAALGYE----WAMRPIIATGVSPNFRDARGRTALHWASYFGREET---VIMLVKLGAAPGA 677 (988)
Q Consensus 605 ~Gad~n~~D~~G~TpLH~AA~~G~~----~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ei---V~~LL~~GAd~n~ 677 (988)
+|++++..+.++.++||.||..|+. +++++|++.|++++.+|..|+||||+||..|+.++ +++|+..|++++.
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~ 88 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA 88 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence 5778888999999999999999998 66678889999999999999999999999998654 8999999999998
Q ss_pred cCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-ccCCCCCCCCccccCcchHHHHHHh----hHHHHHHHHHcCC
Q 001972 678 VEDPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV 747 (988)
Q Consensus 678 ~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle-~Ga~~~~~~l~~~d~~~g~taa~~~----~~~~v~~Lle~~a 747 (988)
++. ..|.||||+|+..|+.+++++|++ .| .+++..+.. |.+|+..+ ..++++.|++.++
T Consensus 89 ~d~-----~~g~TpLh~A~~~g~~~iv~~Ll~~~g-----ad~~~~d~~-g~tpL~~A~~~~~~~iv~~Ll~~ga 152 (166)
T PHA02743 89 REL-----GTGNTLLHIAASTKNYELAEWLCRQLG-----VNLGAINYQ-HETAYHIAYKMRDRRMMEILRANGA 152 (166)
T ss_pred CCC-----CCCCcHHHHHHHhCCHHHHHHHHhccC-----CCccCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 762 379999999999999999999995 78 555666665 66665554 5689999999997
No 37
>PHA02741 hypothetical protein; Provisional
Probab=99.63 E-value=1.9e-15 Score=154.84 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHH------hCCCCCCccCCCCCcHHHHHHHcCC----hhhhHHHHhCCCCCCccCC-CC
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIH------EGGKGPNVIDDGGQGVVHLAAALGY----EWAMRPIIATGVSPNFRDA-RG 649 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Ll------e~Gad~n~~D~~G~TpLH~AA~~G~----~~iV~~LL~~Gadvn~~D~-~G 649 (988)
...+.||.++..+..+. ++.|+ ..|++++.+|..|+||||+|+..|+ .+++++|+..|+++|.+|. .|
T Consensus 20 ~g~t~Lh~Aa~~g~~~~-v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g 98 (169)
T PHA02741 20 EGENFFHEAARCGCFDI-IARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG 98 (169)
T ss_pred CCCCHHHHHHHcCCHHH-HHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence 34567888887665443 23332 3468889999999999999999998 4788999999999999985 89
Q ss_pred CcHhhHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCC
Q 001972 650 RTALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 713 (988)
Q Consensus 650 ~TpLH~Aa~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~ 713 (988)
+||||+|+..++.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|++.++.
T Consensus 99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n------~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCN------ADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC------CCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 589988877 6899999999999999999999988744
No 38
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.63 E-value=2.9e-15 Score=148.37 Aligned_cols=139 Identities=22% Similarity=0.170 Sum_probs=109.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHhCCC-CCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCH
Q 001972 584 KLIQNLLRNRLCEWLVWKIHEGGK-GPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 662 (988)
Q Consensus 584 ~lL~~al~~~l~e~Lv~~Lle~Ga-d~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 662 (988)
.+|-.+-+..+. . |+.|++..+ .+|.+|.+|.||||.|+..|+.++|..|+..||+++.+...||||||-||..++.
T Consensus 66 l~lwaae~nrl~-e-V~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~ 143 (228)
T KOG0512|consen 66 LLLWAAEKNRLT-E-VQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF 143 (228)
T ss_pred HHHHHHhhccHH-H-HHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence 334444444433 2 444554444 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCc-HHHHHHHHH-ccCCCCCCCCccccCcchHHHHHHhhH
Q 001972 663 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH-KGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALAAE 736 (988)
Q Consensus 663 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~-~eiv~~Lle-~Ga~~~~~~l~~~d~~~g~taa~~~~~ 736 (988)
+|+..||.+|||+|+.. ....||||+|+...+ ...+.+|+. .+ .....+++. +.+|..++..
T Consensus 144 ~va~~LLqhgaDVnA~t------~g~ltpLhlaa~~rn~r~t~~~Ll~dry-----i~pg~~nn~-eeta~~iARR 207 (228)
T KOG0512|consen 144 EVAGRLLQHGADVNAQT------KGLLTPLHLAAGNRNSRDTLELLLHDRY-----IHPGLKNNL-EETAFDIARR 207 (228)
T ss_pred hHHHHHHhccCcccccc------cccchhhHHhhcccchHHHHHHHhhccc-----cChhhhcCc-cchHHHHHHH
Confidence 99999999999999998 478999999998765 456666654 33 333344554 6677777644
No 39
>PHA02741 hypothetical protein; Provisional
Probab=99.62 E-value=2e-15 Score=154.52 Aligned_cols=128 Identities=23% Similarity=0.210 Sum_probs=108.1
Q ss_pred CCccCCCCCcHHHHHHHcCChhhhHHHHh------CCCCCCccCCCCCcHhhHHHhcCC----HHHHHHHHHcCCCCCcc
Q 001972 609 PNVIDDGGQGVVHLAAALGYEWAMRPIIA------TGVSPNFRDARGRTALHWASYFGR----EETVIMLVKLGAAPGAV 678 (988)
Q Consensus 609 ~n~~D~~G~TpLH~AA~~G~~~iV~~LL~------~Gadvn~~D~~G~TpLH~Aa~~G~----~eiV~~LL~~GAd~n~~ 678 (988)
++.+|..|.||||+||..|+.++++.|+. .|++++.+|..|+||||+|+..|+ .+++++|+.+|++++.+
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~ 93 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ 93 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence 45578899999999999999999998853 378999999999999999999999 58899999999999987
Q ss_pred CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-ccCCCCCCCCccccCcchHHHHHHh----hHHHHHHHHHcCC
Q 001972 679 EDPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV 747 (988)
Q Consensus 679 dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle-~Ga~~~~~~l~~~d~~~g~taa~~~----~~~~v~~Lle~~a 747 (988)
+. ..|.||||+|+..++.+++++|+. .| .+++..+.. |.+|...+ ..++++.|.+.++
T Consensus 94 ~~-----~~g~TpLh~A~~~~~~~iv~~Ll~~~g-----~~~~~~n~~-g~tpL~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 94 EM-----LEGDTALHLAAHRRDHDLAEWLCCQPG-----IDLHFCNAD-NKSPFELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred Cc-----CCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCcCCCC-CCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 62 389999999999999999999997 58 455666666 77666554 5577888777654
No 40
>PHA02730 ankyrin-like protein; Provisional
Probab=99.61 E-value=4.9e-15 Score=177.93 Aligned_cols=157 Identities=13% Similarity=0.043 Sum_probs=130.2
Q ss_pred chhhhHHHHHHHHhh--hHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC----hhhhHHHHhCCC--CCCccCCCCC
Q 001972 579 PNSRDKLIQNLLRNR--LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGY----EWAMRPIIATGV--SPNFRDARGR 650 (988)
Q Consensus 579 ~~~~~~lL~~al~~~--l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~----~~iV~~LL~~Ga--dvn~~D~~G~ 650 (988)
.+..+.+|+.-+... ....+++.|+++|+++|.. ..|.||||+|+..++ .+++++|+.+|+ ++|.+|..|.
T Consensus 340 ~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~ 418 (672)
T PHA02730 340 ESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGR 418 (672)
T ss_pred hhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCC
Confidence 445667788777755 5677899999999999985 799999999998885 799999999998 6999999999
Q ss_pred cHhhH---HHhcC---------CHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCC
Q 001972 651 TALHW---ASYFG---------REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSS 718 (988)
Q Consensus 651 TpLH~---Aa~~G---------~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~ 718 (988)
||||. |+..+ ..+++++|+.+||++|.+| ..|.||||+|+..++.+++++|+++| ++
T Consensus 419 T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD------~~G~TPLh~Aa~~~~~eive~LI~~G-----Ad 487 (672)
T PHA02730 419 LCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMID------NENKTLLYYAVDVNNIQFARRLLEYG-----AS 487 (672)
T ss_pred chHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccC------CCCCCHHHHHHHhCCHHHHHHHHHCC-----CC
Confidence 99994 33332 2356999999999999988 69999999999999999999999999 55
Q ss_pred CccccCcchHHHHHHhh------HHHHHHHHHcCC
Q 001972 719 LTVNENGMDNVAAALAA------EKANETAAQIGV 747 (988)
Q Consensus 719 l~~~d~~~g~taa~~~~------~~~v~~Lle~~a 747 (988)
++..+...|.+|...+. .++++.|++.++
T Consensus 488 IN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga 522 (672)
T PHA02730 488 VNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP 522 (672)
T ss_pred CCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence 66665422678877763 569999999996
No 41
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.61 E-value=7.1e-16 Score=162.55 Aligned_cols=129 Identities=24% Similarity=0.222 Sum_probs=116.8
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCC
Q 001972 605 GGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPA 684 (988)
Q Consensus 605 ~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~ 684 (988)
..-|.|.-|..|.+||||||..|+..+|+.||..|+.+|..+....||||+||..||.++|..|++..+|+|+++
T Consensus 23 tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavn----- 97 (448)
T KOG0195|consen 23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN----- 97 (448)
T ss_pred cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhh-----
Confidence 345788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHHHHHHc
Q 001972 685 FPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQI 745 (988)
Q Consensus 685 d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~~Lle~ 745 (988)
..|.|||||||..|+..|++-|+..| +.+++-++. |.+|.+.+....-+.|.+.
T Consensus 98 -ehgntplhyacfwgydqiaedli~~g-----a~v~icnk~-g~tpldkakp~l~~~l~e~ 151 (448)
T KOG0195|consen 98 -EHGNTPLHYACFWGYDQIAEDLISCG-----AAVNICNKK-GMTPLDKAKPMLKNTLLEI 151 (448)
T ss_pred -ccCCCchhhhhhhcHHHHHHHHHhcc-----ceeeecccC-CCCchhhhchHHHHHHHHH
Confidence 59999999999999999999999999 666777777 8889888876666665543
No 42
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.60 E-value=1.5e-15 Score=152.73 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHhCCCC-----CCccCCCCCcHHHHHHHcCChh---hhHHHHhCCCCCCccC-CCCCc
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKG-----PNVIDDGGQGVVHLAAALGYEW---AMRPIIATGVSPNFRD-ARGRT 651 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Lle~Gad-----~n~~D~~G~TpLH~AA~~G~~~---iV~~LL~~Gadvn~~D-~~G~T 651 (988)
...+.||.++..+-.+.++.. .....+ ++..|..|+||||+||..|+.+ ++++|+..|+++|.+| ..|+|
T Consensus 16 ~g~tpLh~A~~~g~~~~l~~~-~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T 94 (154)
T PHA02736 16 EGENILHYLCRNGGVTDLLAF-KNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT 94 (154)
T ss_pred CCCCHHHHHHHhCCHHHHHHH-HHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCc
Confidence 345778888887643222211 111111 3356889999999999999874 6889999999999998 48999
Q ss_pred HhhHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCC
Q 001972 652 ALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 714 (988)
Q Consensus 652 pLH~Aa~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~ 714 (988)
|||+|+..|+.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|+..|++.
T Consensus 95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~------~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 95 PLHIAVYTQNYELATWLCNQPGVNMEILN------YAFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCcccc------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999998 599998887 69999999999999999999999999554
No 43
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.60 E-value=2e-15 Score=154.47 Aligned_cols=129 Identities=19% Similarity=0.129 Sum_probs=112.2
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCC
Q 001972 605 GGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPA 684 (988)
Q Consensus 605 ~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~ 684 (988)
....+|..|+.|.|||.||+..|+..+|++||..||+++...+...|+|.+|+..|..+||++|+.++.|+|..|
T Consensus 149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD----- 223 (296)
T KOG0502|consen 149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD----- 223 (296)
T ss_pred hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec-----
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHH----HHHHhhHHHHHHHHHcC
Q 001972 685 FPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNV----AAALAAEKANETAAQIG 746 (988)
Q Consensus 685 d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~t----aa~~~~~~~v~~Lle~~ 746 (988)
.+|.|||-+|+..||.+|++.|++.| ++++..+.. |.+ |...|.. .|+.+++..
T Consensus 224 -wNGgTpLlyAvrgnhvkcve~Ll~sG-----Ad~t~e~ds-Gy~~mdlAValGyr-~Vqqvie~h 281 (296)
T KOG0502|consen 224 -WNGGTPLLYAVRGNHVKCVESLLNSG-----ADVTQEDDS-GYWIMDLAVALGYR-IVQQVIEKH 281 (296)
T ss_pred -cCCCceeeeeecCChHHHHHHHHhcC-----CCccccccc-CCcHHHHHHHhhhH-HHHHHHHHH
Confidence 79999999999999999999999999 566665554 553 3334433 677666654
No 44
>PHA02917 ankyrin-like protein; Provisional
Probab=99.60 E-value=9.3e-15 Score=178.77 Aligned_cols=129 Identities=11% Similarity=-0.040 Sum_probs=90.1
Q ss_pred chhhhHHHHHHHHhhh--HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChh----hhHHHHhCCCCCCccCCCCCcH
Q 001972 579 PNSRDKLIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEW----AMRPIIATGVSPNFRDARGRTA 652 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l--~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~----iV~~LL~~Gadvn~~D~~G~Tp 652 (988)
+....+.||.++.... ...+++.|++.|++++..|..|+||||+|+..|+.+ +++.|+..+..+|..|. .++
T Consensus 29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~ 106 (661)
T PHA02917 29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIF 106 (661)
T ss_pred CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chH
Confidence 3344678888766532 345678888899999999999999999999888743 44566665433444332 256
Q ss_pred hhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHH--HcCcHHHHHHHHHccCCCC
Q 001972 653 LHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS--SRGHKGIAGYLAEADLSSH 715 (988)
Q Consensus 653 LH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa--~~G~~eiv~~Lle~Ga~~~ 715 (988)
+|+|+..|+.++|++|+++|++++..+ ..|.||||.|+ ..|+.+++++|+++|++.+
T Consensus 107 ~~~a~~~~~~e~vk~Ll~~Gadin~~d------~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn 165 (661)
T PHA02917 107 SYMKSKNVDVDLIKVLVEHGFDLSVKC------ENHRSVIENYVMTDDPVPEIIDLFIENGCSVL 165 (661)
T ss_pred HHHHhhcCCHHHHHHHHHcCCCCCccC------CCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence 666777777777777777777777766 57778887443 4677788888888775543
No 45
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.59 E-value=5.2e-15 Score=174.16 Aligned_cols=131 Identities=24% Similarity=0.247 Sum_probs=98.8
Q ss_pred CCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCCC
Q 001972 609 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPG 687 (988)
Q Consensus 609 ~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~ 687 (988)
+|..|.+|.||||+||..|+.+++..|+..|++++.++.++.||||.||.+|+..+|+-||+ .|... .+..|..
T Consensus 266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rl-----lne~D~~ 340 (929)
T KOG0510|consen 266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRL-----LNESDLH 340 (929)
T ss_pred hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccc-----ccccccc
Confidence 34568888888888888888888888888888888888888888888888888888888887 33221 1223478
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchH----HHHHHhhHHHHHHHHHcCC
Q 001972 688 GQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDN----VAAALAAEKANETAAQIGV 747 (988)
Q Consensus 688 G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~----taa~~~~~~~v~~Lle~~a 747 (988)
|.||||+|+..||..++++|+..|+..+... -.|.. |. .|+-.+...+|+.|+.+|+
T Consensus 341 g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~--e~D~d-g~TaLH~Aa~~g~~~av~~Li~~Ga 401 (929)
T KOG0510|consen 341 GMTPLHLAAKSGHDRVVQLLLNKGALFLNMS--EADSD-GNTALHLAAKYGNTSAVQKLISHGA 401 (929)
T ss_pred CCCchhhhhhcCHHHHHHHHHhcChhhhccc--ccccC-CchhhhHHHHhccHHHHHHHHHcCC
Confidence 8888888888888888888888886554200 11333 44 4555556788888888887
No 46
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.59 E-value=3e-15 Score=188.44 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=114.9
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHh
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 658 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~ 658 (988)
+....+.||.|+..+ ...+++.|+++|+++|.+|.+|.||||+|+..|+.+++++|+..++..+. ..|.++||+||.
T Consensus 555 d~~G~TpLh~Aa~~g-~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~ 631 (823)
T PLN03192 555 DSKGRTPLHIAASKG-YEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAK 631 (823)
T ss_pred CCCCCCHHHHHHHcC-hHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHH
Confidence 445678999999887 45677889999999999999999999999999999999999998876653 457799999999
Q ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCC
Q 001972 659 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSH 715 (988)
Q Consensus 659 ~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~ 715 (988)
.|+.++++.|+++|+++|..| ..|.||||+|+..|+.+++++|+++|++.+
T Consensus 632 ~g~~~~v~~Ll~~Gadin~~d------~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~ 682 (823)
T PLN03192 632 RNDLTAMKELLKQGLNVDSED------HQGATALQVAMAEDHVDMVRLLIMNGADVD 682 (823)
T ss_pred hCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 999999999999999999887 699999999999999999999999995443
No 47
>PHA02917 ankyrin-like protein; Provisional
Probab=99.58 E-value=1.7e-14 Score=176.50 Aligned_cols=159 Identities=8% Similarity=-0.038 Sum_probs=122.4
Q ss_pred hhhhHHHHHHHHhh---hHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHH
Q 001972 580 NSRDKLIQNLLRNR---LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 656 (988)
Q Consensus 580 ~~~~~lL~~al~~~---l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~A 656 (988)
....+.|+.++..+ ....+++.|++.+..+|..|. .+++|+|+..|+.++|++|+++|+|+|.+|.+|+||||+|
T Consensus 66 ~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~ 143 (661)
T PHA02917 66 WRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENY 143 (661)
T ss_pred CCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHH
Confidence 34457888777654 345567778876554555443 3778889999999999999999999999999999999965
Q ss_pred H--hcCCHHHHHHHHHcCCCCCccCCCC--------CCCCCCCcHHHHHHH-----------cCcHHHHHHHHHccCCCC
Q 001972 657 S--YFGREETVIMLVKLGAAPGAVEDPT--------PAFPGGQTAADLASS-----------RGHKGIAGYLAEADLSSH 715 (988)
Q Consensus 657 a--~~G~~eiV~~LL~~GAd~n~~dd~~--------~~d~~G~TPLhlAa~-----------~G~~eiv~~Lle~Ga~~~ 715 (988)
+ ..|+.++|++|+++||+++..+... .....+.||||+|+. .|+.+++++|+++|
T Consensus 144 ~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G---- 219 (661)
T PHA02917 144 VMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG---- 219 (661)
T ss_pred HHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC----
Confidence 4 5789999999999999998754200 011234699999986 56899999999999
Q ss_pred CCCCccccCcchHHHHHHhh------HHHHHHHHHcCC
Q 001972 716 LSSLTVNENGMDNVAAALAA------EKANETAAQIGV 747 (988)
Q Consensus 716 ~~~l~~~d~~~g~taa~~~~------~~~v~~Lle~~a 747 (988)
++++.++.. |.+|++.+. .++|+.|++ ++
T Consensus 220 -advn~~d~~-G~TpLh~A~~~g~~~~eivk~Li~-g~ 254 (661)
T PHA02917 220 -IKPSSIDKN-YCTALQYYIKSSHIDIDIVKLLMK-GI 254 (661)
T ss_pred -CCcccCCCC-CCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence 677777777 888777654 379999975 54
No 48
>PHA02795 ankyrin-like protein; Provisional
Probab=99.57 E-value=2.2e-14 Score=165.37 Aligned_cols=164 Identities=6% Similarity=-0.136 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHhCCCCCC------ccCCCCCcHHHHHHH--cCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHH
Q 001972 593 RLCEWLVWKIHEGGKGPN------VIDDGGQGVVHLAAA--LGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREET 664 (988)
Q Consensus 593 ~l~e~Lv~~Lle~Gad~n------~~D~~G~TpLH~AA~--~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ei 664 (988)
..+..+++.|+.+|+++| .++..++|+||+++. .|+.++|++|+.+|||++.. ++.||||+|+..|+.++
T Consensus 87 ~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eI 164 (437)
T PHA02795 87 ITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSV 164 (437)
T ss_pred cchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHH
Confidence 345677888999999999 788899999999999 89999999999999999985 45899999999999999
Q ss_pred HHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHH----HhhHHHHH
Q 001972 665 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA----LAAEKANE 740 (988)
Q Consensus 665 V~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~----~~~~~~v~ 740 (988)
|++|+++|++.....+....+..|.||+|.|+..++.+++++|+++| ++++.++.. |.+|.. .++.++++
T Consensus 165 Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-----ADIN~kD~~-G~TpLh~Aa~~g~~eiVe 238 (437)
T PHA02795 165 VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-----EDINQLDAG-GRTLLYRAIYAGYIDLVS 238 (437)
T ss_pred HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-----CCcCcCCCC-CCCHHHHHHHcCCHHHHH
Confidence 99999999854322211111245889999999999999999999999 666677766 776554 45689999
Q ss_pred HHHHcCC-CCCCCchhhhhhhhhhHHHhhhhh
Q 001972 741 TAAQIGV-QSDGPAAEQLSLRGSLAAVRKSAH 771 (988)
Q Consensus 741 ~Lle~~a-~~~~~~~~~lslkdsL~AvR~a~~ 771 (988)
.|++.|+ .+.. ...+.++++.|+.
T Consensus 239 lLL~~GAdIN~~-------d~~G~TpLh~Aa~ 263 (437)
T PHA02795 239 WLLENGANVNAV-------MSNGYTCLDVAVD 263 (437)
T ss_pred HHHHCCCCCCCc-------CCCCCCHHHHHHH
Confidence 9999998 4443 3456677766654
No 49
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.57 E-value=7.8e-15 Score=182.29 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=124.2
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcC
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 660 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G 660 (988)
...+.+|.+...+ ....++.++++|++++.++..|.||||.||..|+..+|++||++|+|++.+|..|+||||.||..|
T Consensus 506 ~~l~~lhla~~~~-~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G 584 (1143)
T KOG4177|consen 506 KGLTPLHLAADED-TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQG 584 (1143)
T ss_pred hccchhhhhhhhh-hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcC
Confidence 3445566555544 445567789999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh
Q 001972 661 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 734 (988)
Q Consensus 661 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~ 734 (988)
+.+|+.+|+++||++|+.+ .+|.|||++|+..|+.+++++|+..|.++...+...++.. |.+|....
T Consensus 585 ~~~i~~LLlk~GA~vna~d------~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~-g~~p~~v~ 651 (1143)
T KOG4177|consen 585 HNDIAELLLKHGASVNAAD------LDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRK-GAVPEDVA 651 (1143)
T ss_pred hHHHHHHHHHcCCCCCccc------ccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhc-ccChhhHH
Confidence 9999999999999999988 7999999999999999999999999977633334444444 66555444
No 50
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=99.57 E-value=9.3e-15 Score=127.99 Aligned_cols=80 Identities=29% Similarity=0.508 Sum_probs=69.7
Q ss_pred EEEeecCCCccCCCceEEEEEcc-cCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCC-CCCceeEEEEEeCCCcc
Q 001972 411 SIRDFSPDWAYSGAETKVLIIGM-FLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-HAAGRVPFYITGSNRLA 488 (988)
Q Consensus 411 ~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pp-h~pG~V~l~Vt~~n~~~ 488 (988)
.|+.++|+||+++|||+|+|+|. |+++ +.|+||+..|-.|.|++.+|+|.+|| |.||.|+|.+......-
T Consensus 2 ~I~ai~P~eG~~tGGt~VtI~GenF~~g--------l~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~~~ 73 (85)
T cd01175 2 CIKAISPSEGWTTGGATVIIIGDNFFDG--------LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQF 73 (85)
T ss_pred cccEecCCCCcccCCeEEEEECCCCCCC--------cEEEECCEeEEEEEeccceEEEecCCCCCCceEEEEEEECceee
Confidence 59999999999999999999998 5543 99999999999999999999999999 89999999999877666
Q ss_pred cc-cceeeeee
Q 001972 489 CS-EVREFEYR 498 (988)
Q Consensus 489 ~S-ev~~FeYr 498 (988)
|. ..-.|-|.
T Consensus 74 ~~~~p~~f~y~ 84 (85)
T cd01175 74 CKGTPGRFVYT 84 (85)
T ss_pred ccCCCceEEec
Confidence 64 33456653
No 51
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.57 E-value=1.6e-14 Score=131.36 Aligned_cols=85 Identities=31% Similarity=0.401 Sum_probs=78.6
Q ss_pred HHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcC
Q 001972 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG 699 (988)
Q Consensus 620 LH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G 699 (988)
||+||..|+.+++++|++.+++++. |.||||+||..|+.+++++|++.|++++..+ ..|.||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD------KNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS------TTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC------CCCCCHHHHHHHcC
Confidence 7999999999999999999999887 8999999999999999999999999999887 69999999999999
Q ss_pred cHHHHHHHHHccCCC
Q 001972 700 HKGIAGYLAEADLSS 714 (988)
Q Consensus 700 ~~eiv~~Lle~Ga~~ 714 (988)
+.+++++|+++|++.
T Consensus 71 ~~~~~~~Ll~~g~~~ 85 (89)
T PF12796_consen 71 NLEIVKLLLEHGADV 85 (89)
T ss_dssp HHHHHHHHHHTTT-T
T ss_pred CHHHHHHHHHcCCCC
Confidence 999999999999433
No 52
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.56 E-value=9.2e-15 Score=163.08 Aligned_cols=137 Identities=25% Similarity=0.245 Sum_probs=119.0
Q ss_pred HHHHHh-CCCCCCc--------cCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHH
Q 001972 599 VWKIHE-GGKGPNV--------IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLV 669 (988)
Q Consensus 599 v~~Lle-~Gad~n~--------~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL 669 (988)
++.|++ .++++.. ...+|-+||..|+..||.++|+.|+.+|++||.......|||--||.-||.++|++|+
T Consensus 58 VeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLv 137 (615)
T KOG0508|consen 58 VEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLV 137 (615)
T ss_pred HHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHH
Confidence 344444 4555543 2346899999999999999999999999999999888899999999999999999999
Q ss_pred HcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHH----HhhHHHHHHHHHc
Q 001972 670 KLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA----LAAEKANETAAQI 745 (988)
Q Consensus 670 ~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~----~~~~~~v~~Lle~ 745 (988)
++|||+++.+ ..|.|.||+||.+||.+|+++|++.| ++++.++.. |.||++ .|+.++++.|+..
T Consensus 138 E~gad~~Ian------rhGhTcLmIa~ykGh~~I~qyLle~g-----ADvn~ks~k-GNTALH~caEsG~vdivq~Ll~~ 205 (615)
T KOG0508|consen 138 EHGADPEIAN------RHGHTCLMIACYKGHVDIAQYLLEQG-----ADVNAKSYK-GNTALHDCAESGSVDIVQLLLKH 205 (615)
T ss_pred HcCCCCcccc------cCCCeeEEeeeccCchHHHHHHHHhC-----CCcchhccc-CchHHHhhhhcccHHHHHHHHhC
Confidence 9999999988 79999999999999999999999999 667777666 777664 4468999999999
Q ss_pred CC
Q 001972 746 GV 747 (988)
Q Consensus 746 ~a 747 (988)
++
T Consensus 206 ga 207 (615)
T KOG0508|consen 206 GA 207 (615)
T ss_pred Cc
Confidence 98
No 53
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.56 E-value=2.6e-15 Score=163.12 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=116.5
Q ss_pred CCccCCCCCcHHHHHHHcCChhhhHHHHhCC-CCCCccCCCCCcHhhHHHhc-----CCHHHHHHHHHcCCCCCccCCCC
Q 001972 609 PNVIDDGGQGVVHLAAALGYEWAMRPIIATG-VSPNFRDARGRTALHWASYF-----GREETVIMLVKLGAAPGAVEDPT 682 (988)
Q Consensus 609 ~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~G-advn~~D~~G~TpLH~Aa~~-----G~~eiV~~LL~~GAd~n~~dd~~ 682 (988)
+|..|.+|.|+||||+.++++++|+.||+.| +++|.+++.|+||+|+|+.. .+..+|.-|...| ++|++..
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs-- 337 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS-- 337 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh--
Confidence 4668999999999999999999999999986 78899999899998888763 4566777777654 6777653
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHH----HHHhhHHHHHHHHHcCCCCCCCchhhhh
Q 001972 683 PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVA----AALAAEKANETAAQIGVQSDGPAAEQLS 758 (988)
Q Consensus 683 ~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~ta----a~~~~~~~v~~Lle~~a~~~~~~~~~ls 758 (988)
..|+|+|++|+.+|..++|+.||..| +|+|+.|.. |.|| ++.||.++|+.|+.... -+..+.
T Consensus 338 ---Q~gQTALMLAVSHGr~d~vk~LLacg-----AdVNiQDdD-GSTALMCA~EHGhkEivklLLA~p~-----cd~sLt 403 (452)
T KOG0514|consen 338 ---QHGQTALMLAVSHGRVDMVKALLACG-----ADVNIQDDD-GSTALMCAAEHGHKEIVKLLLAVPS-----CDISLT 403 (452)
T ss_pred ---hhcchhhhhhhhcCcHHHHHHHHHcc-----CCCccccCC-ccHHHhhhhhhChHHHHHHHhccCc-----ccceee
Confidence 67888888888888888888888888 677777777 7754 46667788888776542 122233
Q ss_pred hhhhhHHHhhhhhHHHHHHHHHH
Q 001972 759 LRGSLAAVRKSAHAAALIQQAFR 781 (988)
Q Consensus 759 lkdsL~AvR~a~~AA~rIQ~aFR 781 (988)
..|+-+|+.-|-.|..+-.....
T Consensus 404 D~DgSTAl~IAleagh~eIa~ml 426 (452)
T KOG0514|consen 404 DVDGSTALSIALEAGHREIAVML 426 (452)
T ss_pred cCCCchhhhhHHhcCchHHHHHH
Confidence 56677777776666655444444
No 54
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=170.36 Aligned_cols=132 Identities=23% Similarity=0.177 Sum_probs=116.1
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHh-CC-CCCCccCCCCCcHhhHH
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIA-TG-VSPNFRDARGRTALHWA 656 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~-~G-advn~~D~~G~TpLH~A 656 (988)
++..-++||.+++++..+. +..|+..|++++.+++++.||||.||..|...+|+.||+ .| ...|..|-.|.||||+|
T Consensus 270 d~dg~tpLH~a~r~G~~~s-vd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla 348 (929)
T KOG0510|consen 270 DNDGCTPLHYAARQGGPES-VDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA 348 (929)
T ss_pred cccCCchHHHHHHcCChhH-HHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence 5556688999999996654 577999999999999999999999999999999999998 44 45688999999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCC
Q 001972 657 SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 714 (988)
Q Consensus 657 a~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~ 714 (988)
+..||..++++||++||...... ..|.+|.||||+|+..|+..+|++|+.+|++.
T Consensus 349 a~~gH~~v~qlLl~~GA~~~~~~---e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 349 AKSGHDRVVQLLLNKGALFLNMS---EADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred hhcCHHHHHHHHHhcChhhhccc---ccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 99999999999999999876311 12489999999999999999999999999544
No 55
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.53 E-value=3.6e-14 Score=157.48 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=98.0
Q ss_pred ccCCCCCcH-HHHHHHcCChhhhHHHHhCCCCCCccC----CCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCC
Q 001972 611 VIDDGGQGV-VHLAAALGYEWAMRPIIATGVSPNFRD----ARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAF 685 (988)
Q Consensus 611 ~~D~~G~Tp-LH~AA~~G~~~iV~~LL~~Gadvn~~D----~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d 685 (988)
.+|..|.|+ ||.|+..|+.+++++|+++|+++|.++ ..|.||||+|+..|+.+++++|+++||+++..++
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~----- 101 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE----- 101 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC-----
Confidence 467888775 556667789999999999999999974 5899999999999999999999999999998653
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh
Q 001972 686 PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 734 (988)
Q Consensus 686 ~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~ 734 (988)
..|.||||+|+..|+.+++++|++.| ++++.++.. |.+|...+
T Consensus 102 ~~g~TpLh~Aa~~~~~eivklLL~~G-----Adin~kd~~-G~TpL~~A 144 (300)
T PHA02884 102 EAKITPLYISVLHGCLKCLEILLSYG-----ADINIQTND-MVTPIELA 144 (300)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHH
Confidence 57999999999999999999999999 666666666 77777665
No 56
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.53 E-value=2.1e-14 Score=144.40 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=100.0
Q ss_pred CCccCCCCCcHHHHHHHcCChhhhHHHHhCCC--C-----CCccCCCCCcHhhHHHhcCCH---HHHHHHHHcCCCCCcc
Q 001972 609 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGV--S-----PNFRDARGRTALHWASYFGRE---ETVIMLVKLGAAPGAV 678 (988)
Q Consensus 609 ~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Ga--d-----vn~~D~~G~TpLH~Aa~~G~~---eiV~~LL~~GAd~n~~ 678 (988)
++..|..|.||||+||..|+ ++.+++..++ + ++.+|..|+||||+|+..|+. +++++|+++|++++.+
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 45678899999999999998 3444433322 2 335688999999999999987 4688999999999988
Q ss_pred CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-ccCCCCCCCCccccCcchHHHHHHh----hHHHHHHHHHcCC
Q 001972 679 EDPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV 747 (988)
Q Consensus 679 dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle-~Ga~~~~~~l~~~d~~~g~taa~~~----~~~~v~~Lle~~a 747 (988)
++ ..|.||||+|+..|+.+++++|+. .| .+++..+.. |.+|...+ ..++++.|+..++
T Consensus 88 ~~-----~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-----~d~n~~~~~-g~tpL~~A~~~~~~~i~~~Ll~~ga 150 (154)
T PHA02736 88 ER-----VFGNTPLHIAVYTQNYELATWLCNQPG-----VNMEILNYA-FKTPYYVACERHDAKMMNILRAKGA 150 (154)
T ss_pred CC-----CCCCcHHHHHHHhCCHHHHHHHHhCCC-----CCCccccCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 62 489999999999999999999998 47 556666666 77665544 5688999988886
No 57
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.51 E-value=6.3e-14 Score=174.36 Aligned_cols=193 Identities=21% Similarity=0.189 Sum_probs=148.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHH
Q 001972 584 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663 (988)
Q Consensus 584 ~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~e 663 (988)
+.|+.+...+ +..++..+++.++..+.....|.|+||+|+..++..+++.++++|++++.++..|.||||.||.+|+..
T Consensus 476 T~Lhlaaq~G-h~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~ 554 (1143)
T KOG4177|consen 476 TPLHLAAQEG-HTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVD 554 (1143)
T ss_pred cchhhhhccC-CchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCch
Confidence 4455555555 334456778888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHHHHH
Q 001972 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAA 743 (988)
Q Consensus 664 iV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~~Ll 743 (988)
+|++||++||++++++ ..|+||||.||..|+.+|+.+|+++|++++..+++.... ...+...++...++.+.
T Consensus 555 ~VkfLLe~gAdv~ak~------~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~Tp--L~iA~~lg~~~~~k~l~ 626 (1143)
T KOG4177|consen 555 LVKFLLEHGADVNAKD------KLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTP--LHIAVRLGYLSVVKLLK 626 (1143)
T ss_pred HHHHhhhCCccccccC------CCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcch--hHHHHHhcccchhhHHH
Confidence 9999999999999988 699999999999999999999999997777666654433 45667778889999999
Q ss_pred HcCCCCCCCchhhhhhhhhhHHHhhhhhHHHHHHHHHHhhhhh
Q 001972 744 QIGVQSDGPAAEQLSLRGSLAAVRKSAHAAALIQQAFRVRSFR 786 (988)
Q Consensus 744 e~~a~~~~~~~~~lslkdsL~AvR~a~~AA~rIQ~aFR~~s~R 786 (988)
..++.. ...+...+....-.+..-+......++..++....|
T Consensus 627 ~~~~~~-~~~~~~~e~~~g~~p~~v~e~~~~~~~~~i~~~~~r 668 (1143)
T KOG4177|consen 627 VVTATP-AATDPVKENRKGAVPEDVAEELDTDRQDLIRGKLQR 668 (1143)
T ss_pred hccCcc-ccccchhhhhcccChhhHHHHhhhhhhhhhccchHH
Confidence 888721 122233333334444443333444444455544444
No 58
>PHA02730 ankyrin-like protein; Provisional
Probab=99.49 E-value=2.9e-13 Score=162.85 Aligned_cols=169 Identities=8% Similarity=-0.041 Sum_probs=132.4
Q ss_pred hhhHHHHHHHHhhh--HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC--ChhhhHHHHhCCC--CCCccCCCCCcHhh
Q 001972 581 SRDKLIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG--YEWAMRPIIATGV--SPNFRDARGRTALH 654 (988)
Q Consensus 581 ~~~~lL~~al~~~l--~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G--~~~iV~~LL~~Ga--dvn~~D~~G~TpLH 654 (988)
...+.||.|+..+. ...+++.|+++|++++.+|..|.||||+||..| +.++|++|+.+|+ +++..|.-+++|||
T Consensus 40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~ 119 (672)
T PHA02730 40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY 119 (672)
T ss_pred CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence 45688998888763 356889999999999999999999999999977 7999999999965 45888888999999
Q ss_pred HHHh--cCCHHHHHHHHH-cCCCCCccCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCC--ccccCcchH
Q 001972 655 WASY--FGREETVIMLVK-LGAAPGAVEDPTPAF-PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSL--TVNENGMDN 728 (988)
Q Consensus 655 ~Aa~--~G~~eiV~~LL~-~GAd~n~~dd~~~~d-~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l--~~~d~~~g~ 728 (988)
.++. .++.++|++|+. .|++++... +..+ ..|.+|+++|+..++.++|++|++.|++..--.. ...+.. +.
T Consensus 120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~~--~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~-~c 196 (672)
T PHA02730 120 SYMSSDNIDLRLLKYLIVDKRIRPSKNT--NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD-RC 196 (672)
T ss_pred HHHHhcCCcHHHHHHHHHhcCCChhhhh--hhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC-cc
Confidence 9999 899999999996 678887653 1111 2789999999999999999999999977742110 112222 22
Q ss_pred HH-----------HHHhhHHHHHHHHHcCC-CCCCC
Q 001972 729 VA-----------AALAAEKANETAAQIGV-QSDGP 752 (988)
Q Consensus 729 ta-----------a~~~~~~~v~~Lle~~a-~~~~~ 752 (988)
++ ......++++.|+++|| .+.+.
T Consensus 197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd 232 (672)
T PHA02730 197 KNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD 232 (672)
T ss_pred chhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC
Confidence 11 23447899999999999 55553
No 59
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=9.4e-14 Score=158.27 Aligned_cols=154 Identities=25% Similarity=0.260 Sum_probs=128.5
Q ss_pred HHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHH
Q 001972 587 QNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVI 666 (988)
Q Consensus 587 ~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~ 666 (988)
-.++..++.+- +..|+..|+++|..+.+|.|+||-+|.-.+.+||++|+++|++||..|..||||||-|+.+||..++.
T Consensus 45 l~A~~~~d~~e-v~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~ 123 (527)
T KOG0505|consen 45 LEACSRGDLEE-VRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVE 123 (527)
T ss_pred HhccccccHHH-HHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHH
Confidence 34444444444 35678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCccCCC-----------------------------------------------------CCCCCCCCcHHH
Q 001972 667 MLVKLGAAPGAVEDP-----------------------------------------------------TPAFPGGQTAAD 693 (988)
Q Consensus 667 ~LL~~GAd~n~~dd~-----------------------------------------------------~~~d~~G~TPLh 693 (988)
+|+.+||++.+++.. ..++..|.|+||
T Consensus 124 ~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lH 203 (527)
T KOG0505|consen 124 YLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALH 203 (527)
T ss_pred HHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHH
Confidence 999999887665311 144456999999
Q ss_pred HHHHcCcHHHHHHHHHccCCCCCCCCccccCcchH----HHHHHhhHHHHHHHHHcCC
Q 001972 694 LASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDN----VAAALAAEKANETAAQIGV 747 (988)
Q Consensus 694 lAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~----taa~~~~~~~v~~Lle~~a 747 (988)
+|+.+|+.++.++|+++| .+++++|.. |. .++..+..++.+.|+++++
T Consensus 204 vAaa~Gy~e~~~lLl~ag-----~~~~~~D~d-gWtPlHAAA~Wg~~~~~elL~~~ga 255 (527)
T KOG0505|consen 204 VAAANGYTEVAALLLQAG-----YSVNIKDYD-GWTPLHAAAHWGQEDACELLVEHGA 255 (527)
T ss_pred HHHhhhHHHHHHHHHHhc-----cCccccccc-CCCcccHHHHhhhHhHHHHHHHhhc
Confidence 999999999999999999 555555555 54 4566777888999988887
No 60
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.48 E-value=5.6e-14 Score=160.07 Aligned_cols=145 Identities=23% Similarity=0.241 Sum_probs=125.6
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCc-----------------
Q 001972 582 RDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF----------------- 644 (988)
Q Consensus 582 ~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~----------------- 644 (988)
.-+.+|.+|... ...+|..|++.|++||..|..|+||||.|+..||..++.+|+.+|+++..
T Consensus 73 glTalhq~~id~-~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~ 151 (527)
T KOG0505|consen 73 GLTALHQACIDD-NLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEAT 151 (527)
T ss_pred cchhHHHHHhcc-cHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcch
Confidence 346788888876 56678899999999999999999999999999999999999998865332
Q ss_pred ------------------------------------------cCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCC
Q 001972 645 ------------------------------------------RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682 (988)
Q Consensus 645 ------------------------------------------~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~ 682 (988)
++..|-|+||.|+.+|..++.++|+.+|.+++++|
T Consensus 152 ~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D--- 228 (527)
T KOG0505|consen 152 LDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKD--- 228 (527)
T ss_pred hHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccc---
Confidence 22347899999999999999999999999999988
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHH
Q 001972 683 PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKAN 739 (988)
Q Consensus 683 ~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v 739 (988)
.+|+||||.|+..|+.+++++|+++| ++++..... |.+++..+..+.+
T Consensus 229 ---~dgWtPlHAAA~Wg~~~~~elL~~~g-----a~~d~~t~~-g~~p~dv~dee~~ 276 (527)
T KOG0505|consen 229 ---YDGWTPLHAAAHWGQEDACELLVEHG-----ADMDAKTKM-GETPLDVADEEEL 276 (527)
T ss_pred ---ccCCCcccHHHHhhhHhHHHHHHHhh-----cccchhhhc-CCCCccchhhhhH
Confidence 69999999999999999999999999 677777666 7777777766665
No 61
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.45 E-value=4.1e-13 Score=122.06 Aligned_cols=89 Identities=28% Similarity=0.342 Sum_probs=76.8
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHH
Q 001972 586 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665 (988)
Q Consensus 586 L~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV 665 (988)
|+.++..+..+ +++.|++.+.+++. |.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++
T Consensus 1 L~~A~~~~~~~-~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 1 LHIAAQNGNLE-ILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp HHHHHHTTTHH-HHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred CHHHHHcCCHH-HHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 45666666444 45677888888876 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccC
Q 001972 666 IMLVKLGAAPGAVE 679 (988)
Q Consensus 666 ~~LL~~GAd~n~~d 679 (988)
++|+++|++++.+|
T Consensus 76 ~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 76 KLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHTTT-TTSS-
T ss_pred HHHHHcCCCCCCcC
Confidence 99999999998764
No 62
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.41 E-value=3.4e-13 Score=158.12 Aligned_cols=159 Identities=20% Similarity=0.130 Sum_probs=105.4
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCH
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 662 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 662 (988)
-++||.|+.++ ...++++|++..+-++.+|..|.+|||+||..|+.++|+.|+.++..+|..+..|.||||.|+..||.
T Consensus 50 fTalhha~Lng-~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~ 128 (854)
T KOG0507|consen 50 FTLLHHAVLNG-QNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHL 128 (854)
T ss_pred hhHHHHHHhcC-chHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcch
Confidence 35677777666 34456777777777777777788888888888888888888887777788878888888888888888
Q ss_pred HHHHHHHHcCCCCCccCCC-----------------------------------CCCCCCCCcHHHHHHHcCcHHHHHHH
Q 001972 663 ETVIMLVKLGAAPGAVEDP-----------------------------------TPAFPGGQTAADLASSRGHKGIAGYL 707 (988)
Q Consensus 663 eiV~~LL~~GAd~n~~dd~-----------------------------------~~~d~~G~TPLhlAa~~G~~eiv~~L 707 (988)
++|.+||.+|+++-.+++. ..++..+.+|||+|+.+||.+|++.|
T Consensus 129 dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~l 208 (854)
T KOG0507|consen 129 EVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQAL 208 (854)
T ss_pred HHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHH
Confidence 8888888888877766521 02234455666666666666666666
Q ss_pred HHccCCCCCCCCccccCc--chHHHHHHhhHHHHHHHHHcCC
Q 001972 708 AEADLSSHLSSLTVNENG--MDNVAAALAAEKANETAAQIGV 747 (988)
Q Consensus 708 le~Ga~~~~~~l~~~d~~--~g~taa~~~~~~~v~~Lle~~a 747 (988)
+++|. ++|...+. ....|+..+..++|.+|++.+-
T Consensus 209 l~ag~-----din~~t~~gtalheaalcgk~evvr~ll~~gi 245 (854)
T KOG0507|consen 209 LEAGF-----DINYTTEDGTALHEAALCGKAEVVRFLLEIGI 245 (854)
T ss_pred HhcCC-----CcccccccchhhhhHhhcCcchhhhHHHhhcc
Confidence 66663 33332222 0124455555666666666653
No 63
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.40 E-value=4.3e-13 Score=141.82 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=110.3
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHh
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 658 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~ 658 (988)
++..-.+||-+++++ +..+++.|+..|+.+|..+....||||+||..||.++|..||...+|+|+.+..|.|||||||.
T Consensus 31 ddhgfsplhwaakeg-h~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacf 109 (448)
T KOG0195|consen 31 DDHGFSPLHWAAKEG-HVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACF 109 (448)
T ss_pred cccCcchhhhhhhcc-cHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhh
Confidence 334446789899988 5678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCC
Q 001972 659 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 714 (988)
Q Consensus 659 ~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~ 714 (988)
.|...+++-|+.+||.+++.+ +.|.|||+.|.-.-..-+.++--+.|-..
T Consensus 110 wgydqiaedli~~ga~v~icn------k~g~tpldkakp~l~~~l~e~aek~gq~~ 159 (448)
T KOG0195|consen 110 WGYDQIAEDLISCGAAVNICN------KKGMTPLDKAKPMLKNTLLEIAEKHGQSP 159 (448)
T ss_pred hcHHHHHHHHHhccceeeecc------cCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence 999999999999999999988 79999999886543333444444556443
No 64
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.39 E-value=2.5e-12 Score=160.82 Aligned_cols=148 Identities=19% Similarity=0.108 Sum_probs=106.2
Q ss_pred chhhhHHHH-HHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC---ChhhhHHHHhCCCC------CC----c
Q 001972 579 PNSRDKLIQ-NLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG---YEWAMRPIIATGVS------PN----F 644 (988)
Q Consensus 579 ~~~~~~lL~-~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G---~~~iV~~LL~~Gad------vn----~ 644 (988)
+....+.|| .|+..+ ...++++|++.|+ .+..|.||||.|+..+ ...++..++..+.+ ++ .
T Consensus 49 d~~G~t~Lh~~A~~~~-~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~ 123 (743)
T TIGR00870 49 DRLGRSALFVAAIENE-NLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTS 123 (743)
T ss_pred CccchhHHHHHHHhcC-hHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccc
Confidence 344567777 555544 5566777777776 5677888888887622 22333444443322 11 1
Q ss_pred cCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCC--------CCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCC
Q 001972 645 RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT--------PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 716 (988)
Q Consensus 645 ~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~--------~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~ 716 (988)
.+..|.||||+||..|+.++|++|+++||+++..+... .....|.||||+|+..|+.+++++|++.|
T Consensus 124 ~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g----- 198 (743)
T TIGR00870 124 EFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP----- 198 (743)
T ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-----
Confidence 23469999999999999999999999999998754100 11246999999999999999999999999
Q ss_pred CCCccccCcchHHHHHHhhHH
Q 001972 717 SSLTVNENGMDNVAAALAAEK 737 (988)
Q Consensus 717 ~~l~~~d~~~g~taa~~~~~~ 737 (988)
++++..+.. |.++++.+...
T Consensus 199 adin~~d~~-g~T~Lh~A~~~ 218 (743)
T TIGR00870 199 ADILTADSL-GNTLLHLLVME 218 (743)
T ss_pred cchhhHhhh-hhHHHHHHHhh
Confidence 577777877 88888776544
No 65
>PHA02792 ankyrin-like protein; Provisional
Probab=99.39 E-value=3.4e-12 Score=152.34 Aligned_cols=153 Identities=7% Similarity=-0.034 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHhh-hHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCC--CcHhhHHH
Q 001972 581 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG--RTALHWAS 657 (988)
Q Consensus 581 ~~~~lL~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G--~TpLH~Aa 657 (988)
..+.+|+.-+... +.-.+++.|+++|++++ ...+..++|.||..|+.++|++|+++||++|.+|..| .||||+|+
T Consensus 305 ~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~ 382 (631)
T PHA02792 305 SIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTL 382 (631)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHH
Confidence 4455666655554 34567889999999875 2235678999999999999999999999999999875 69999988
Q ss_pred hcCCHH---HHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh
Q 001972 658 YFGREE---TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 734 (988)
Q Consensus 658 ~~G~~e---iV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~ 734 (988)
..+..+ ++++|+++||++|.++ ..|.||||+|+..++.+++++|+++| ++++.++.. |.+|...+
T Consensus 383 ~n~~~~v~~IlklLIs~GADIN~kD------~~G~TPLh~Aa~~~n~eivelLLs~G-----ADIN~kD~~-G~TpL~~A 450 (631)
T PHA02792 383 SIHESDVLSILKLCKPYIDDINKID------KHGRSILYYCIESHSVSLVEWLIDNG-----ADINITTKY-GSTCIGIC 450 (631)
T ss_pred HhccHhHHHHHHHHHhcCCcccccc------ccCcchHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCC-CCCHHHHH
Confidence 766544 5888999999999987 69999999999999999999999999 677777777 88877766
Q ss_pred h--------------HHHHHHHHHcCC
Q 001972 735 A--------------EKANETAAQIGV 747 (988)
Q Consensus 735 ~--------------~~~v~~Lle~~a 747 (988)
. .++++.|+.+++
T Consensus 451 ~~~~~~~~~~i~~~~~~il~lLLs~~p 477 (631)
T PHA02792 451 VILAHACIPEIAELYIKILEIILSKLP 477 (631)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence 4 356788887774
No 66
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.39 E-value=4.7e-13 Score=137.19 Aligned_cols=108 Identities=24% Similarity=0.254 Sum_probs=101.7
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCC
Q 001972 597 WLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG 676 (988)
Q Consensus 597 ~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n 676 (988)
-+++.|++.|++++...+...++|.+|+..|+.++|++||.+++|+|..|.+|-|||-+|++.||.+||+.||..||+++
T Consensus 174 ~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t 253 (296)
T KOG0502|consen 174 PVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT 253 (296)
T ss_pred HHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcc
Q 001972 677 AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 711 (988)
Q Consensus 677 ~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~G 711 (988)
..++ .|.+++++|+..|+. +|+..+++-
T Consensus 254 ~e~d------sGy~~mdlAValGyr-~Vqqvie~h 281 (296)
T KOG0502|consen 254 QEDD------SGYWIMDLAVALGYR-IVQQVIEKH 281 (296)
T ss_pred cccc------cCCcHHHHHHHhhhH-HHHHHHHHH
Confidence 9884 999999999999998 788777765
No 67
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.38 E-value=9.4e-13 Score=143.53 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=124.6
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCC-CCCCccCCCCCcHHHHHHHcC-----ChhhhHHHHhCCCCCCccCC-CCCc
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGG-KGPNVIDDGGQGVVHLAAALG-----YEWAMRPIIATGVSPNFRDA-RGRT 651 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~G-ad~n~~D~~G~TpLH~AA~~G-----~~~iV~~LL~~Gadvn~~D~-~G~T 651 (988)
+...++.||.++....+..+ +.|++.| +++|..+.-|.||+++||... +..+|..|...| |||++-. .|.|
T Consensus 265 DsNGNTALHYsVSHaNF~VV-~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT 342 (452)
T KOG0514|consen 265 DSNGNTALHYAVSHANFDVV-SILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT 342 (452)
T ss_pred cCCCCeeeeeeecccchHHH-HHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence 44456778988888877654 5566665 689999999999999988653 456788887765 7887654 5999
Q ss_pred HhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-ccCCCCCCCCccccCcchHHH
Q 001972 652 ALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVA 730 (988)
Q Consensus 652 pLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle-~Ga~~~~~~l~~~d~~~g~ta 730 (988)
+||+|+..|+.++|+.||.+|||+|++|+ +|-|+|++|+.+||.+|+++||. .+++..+.|.+-... ...|
T Consensus 343 ALMLAVSHGr~d~vk~LLacgAdVNiQDd------DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTA--l~IA 414 (452)
T KOG0514|consen 343 ALMLAVSHGRVDMVKALLACGADVNIQDD------DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTA--LSIA 414 (452)
T ss_pred hhhhhhhcCcHHHHHHHHHccCCCccccC------CccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchh--hhhH
Confidence 99999999999999999999999999995 99999999999999999998886 478888988764443 4566
Q ss_pred HHHhhHHHHHHHHHc
Q 001972 731 AALAAEKANETAAQI 745 (988)
Q Consensus 731 a~~~~~~~v~~Lle~ 745 (988)
++.++.++.-+|-.+
T Consensus 415 leagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 415 LEAGHREIAVMLYAH 429 (452)
T ss_pred HhcCchHHHHHHHHH
Confidence 677777776665443
No 68
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.37 E-value=2.2e-12 Score=116.07 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=85.4
Q ss_pred HHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHc
Q 001972 619 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR 698 (988)
Q Consensus 619 pLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~ 698 (988)
-+.|+..+|..+-|+..+..|.+||..- .|+||||+||-+|..+++++|+..||+++..| +.|-|||--|+..
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kD------KygITPLLsAvwE 77 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKD------KYGITPLLSAVWE 77 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCcc------ccCCcHHHHHHHH
Confidence 3567788888888888888887777554 68888888888888888888888888887776 6888888888888
Q ss_pred CcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHHHHH
Q 001972 699 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAA 743 (988)
Q Consensus 699 G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~~Ll 743 (988)
||.+||++|+..| ++.+++... |.+.++....+.++.|+
T Consensus 78 GH~~cVklLL~~G-----Adrt~~~Pd-G~~~~eate~edIr~LL 116 (117)
T KOG4214|consen 78 GHRDCVKLLLQNG-----ADRTIHAPD-GTALIEATEEEDIRELL 116 (117)
T ss_pred hhHHHHHHHHHcC-----cccceeCCC-chhHHhhccHHHHHHHh
Confidence 8888888888888 555555555 66666666666665554
No 69
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.36 E-value=1.8e-12 Score=128.83 Aligned_cols=105 Identities=24% Similarity=0.221 Sum_probs=92.2
Q ss_pred cHHHHHHHcCChhhhHHHHhCCCC-CCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHH
Q 001972 618 GVVHLAAALGYEWAMRPIIATGVS-PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 696 (988)
Q Consensus 618 TpLH~AA~~G~~~iV~~LL~~Gad-vn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa 696 (988)
..+.+|+..+....|+.||+..++ +|.+|.+|+||||-|+++||.+||..|+..||++++++ ..|+||||-||
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T------~~GWTPLhSAc 138 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT------NEGWTPLHSAC 138 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc------ccCccchhhhh
Confidence 356789999999999999987665 79999999999999999999999999999999999999 59999999999
Q ss_pred HcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh
Q 001972 697 SRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 734 (988)
Q Consensus 697 ~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~ 734 (988)
..++.+|+.+|+.+| ++++...+. ..+|+.++
T Consensus 139 kWnN~~va~~LLqhg-----aDVnA~t~g-~ltpLhla 170 (228)
T KOG0512|consen 139 KWNNFEVAGRLLQHG-----ADVNAQTKG-LLTPLHLA 170 (228)
T ss_pred cccchhHHHHHHhcc-----Ccccccccc-cchhhHHh
Confidence 999999999999999 566655553 44666665
No 70
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.34 E-value=1.6e-12 Score=152.47 Aligned_cols=132 Identities=20% Similarity=0.228 Sum_probs=116.0
Q ss_pred CCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCC
Q 001972 607 KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFP 686 (988)
Q Consensus 607 ad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~ 686 (988)
..+|..|..|.|+||.||..|+..++++|+++.+-++..|..|.+|||+||+.|+.++|++|+.++..+|+.+ .
T Consensus 40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~------~ 113 (854)
T KOG0507|consen 40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN------I 113 (854)
T ss_pred ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc------c
Confidence 3567789999999999999999999999999999999999999999999999999999999999998888887 5
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHHHHHHcC
Q 001972 687 GGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIG 746 (988)
Q Consensus 687 ~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~~Lle~~ 746 (988)
.|.||||+|+.+||.+++.+|+.+|++....+-+.+.. ...|+..+...+|+.|+...
T Consensus 114 e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~--ldlA~qfgr~~Vvq~ll~~~ 171 (854)
T KOG0507|consen 114 ENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETV--LDLASRFGRAEVVQMLLQKK 171 (854)
T ss_pred cCcCccchhhhhcchHHHHHHHhcCCCccccCcccccH--HHHHHHhhhhHHHHHHhhhc
Confidence 99999999999999999999999995554444333222 44788889999999998874
No 71
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.32 E-value=1.5e-11 Score=115.87 Aligned_cols=94 Identities=31% Similarity=0.428 Sum_probs=64.5
Q ss_pred cCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcH
Q 001972 612 IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTA 691 (988)
Q Consensus 612 ~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TP 691 (988)
.|..|.||||+|+..|+.++++.|+..|++++..+..|.||||+|+..+..+++++|+..|++++..+ ..|.||
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~~~ 76 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD------KDGNTP 76 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC------CCCCCH
Confidence 44566777777777777777777777776666666677777777777777777777777766555544 466677
Q ss_pred HHHHHHcCcHHHHHHHHHcc
Q 001972 692 ADLASSRGHKGIAGYLAEAD 711 (988)
Q Consensus 692 LhlAa~~G~~eiv~~Lle~G 711 (988)
+|+|+..++.+++++|+..|
T Consensus 77 l~~a~~~~~~~~~~~L~~~~ 96 (126)
T cd00204 77 LHLAARNGNLDVVKLLLKHG 96 (126)
T ss_pred HHHHHHcCcHHHHHHHHHcC
Confidence 77777777777777777766
No 72
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=128.66 Aligned_cols=106 Identities=30% Similarity=0.438 Sum_probs=98.5
Q ss_pred HHHHhCCCCCCccCCCCCcHHHHHHHcCC-----hhhhHHHHhCCC---CCCccCCCCCcHhhHHHhcCCHHHHHHHHHc
Q 001972 600 WKIHEGGKGPNVIDDGGQGVVHLAAALGY-----EWAMRPIIATGV---SPNFRDARGRTALHWASYFGREETVIMLVKL 671 (988)
Q Consensus 600 ~~Lle~Gad~n~~D~~G~TpLH~AA~~G~-----~~iV~~LL~~Ga---dvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~ 671 (988)
..++..|++++..|..|.||||+|+..|+ .++++.|++.|+ +.+.+|..|+||||+|+..|+.+++.+|++.
T Consensus 90 ~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 169 (235)
T COG0666 90 KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169 (235)
T ss_pred HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc
Confidence 66788999999999999999999999999 999999999999 5666699999999999999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcc
Q 001972 672 GAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 711 (988)
Q Consensus 672 GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~G 711 (988)
|++++..+ ..|.||+++|+..|+..++..|+..+
T Consensus 170 ~~~~~~~~------~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 170 GADPNSRN------SYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCCcccc------cCCCcchhhhcccchHHHHHHHHhcC
Confidence 99998886 69999999999999999999999976
No 73
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.31 E-value=9.1e-12 Score=155.76 Aligned_cols=160 Identities=16% Similarity=0.045 Sum_probs=122.3
Q ss_pred chhhhHHHHHHHH--hhhHHHHHHHHHhCCCC------CCc----cCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccC
Q 001972 579 PNSRDKLIQNLLR--NRLCEWLVWKIHEGGKG------PNV----IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD 646 (988)
Q Consensus 579 ~~~~~~lL~~al~--~~l~e~Lv~~Lle~Gad------~n~----~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D 646 (988)
+...+++||.+++ ....+.++..+...+.+ ++. .+..|.||||+||..|+.++|++|+++|++++.++
T Consensus 79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~ 158 (743)
T TIGR00870 79 GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA 158 (743)
T ss_pred CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence 4566789999988 45566677766665532 111 23469999999999999999999999999999763
Q ss_pred --------------CCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcC---------cHHH
Q 001972 647 --------------ARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG---------HKGI 703 (988)
Q Consensus 647 --------------~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G---------~~ei 703 (988)
..|.||||+|+..|+.+++++|+++|++++..| ..|+||||+|+..+ ...+
T Consensus 159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d------~~g~T~Lh~A~~~~~~~~~~~~l~~~~ 232 (743)
T TIGR00870 159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD------SLGNTLLHLLVMENEFKAEYEELSCQM 232 (743)
T ss_pred CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh------hhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence 258999999999999999999999999999887 69999999999987 3456
Q ss_pred HHHHHHccCCCCCC--CCccccCcchHHH----HHHhhHHHHHHHHHc
Q 001972 704 AGYLAEADLSSHLS--SLTVNENGMDNVA----AALAAEKANETAAQI 745 (988)
Q Consensus 704 v~~Lle~Ga~~~~~--~l~~~d~~~g~ta----a~~~~~~~v~~Lle~ 745 (988)
.+++++.++..... ..++.|.. |.+| +..++.++++.|++.
T Consensus 233 ~~~l~~ll~~~~~~~el~~i~N~~-g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 233 YNFALSLLDKLRDSKELEVILNHQ-GLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred HHHHHHHHhccCChHhhhhhcCCC-CCCchhhhhhcCCccHHHHHHHH
Confidence 77787776443211 01344555 6554 455677889999884
No 74
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.30 E-value=2.8e-11 Score=114.03 Aligned_cols=119 Identities=29% Similarity=0.352 Sum_probs=108.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCH
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 662 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 662 (988)
.+.|+.+++.+.. .+++.|++.|.+.+..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+..++.
T Consensus 8 ~t~l~~a~~~~~~-~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 86 (126)
T cd00204 8 RTPLHLAASNGHL-EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86 (126)
T ss_pred CCHHHHHHHcCcH-HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcH
Confidence 4678888887755 556778889999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 001972 663 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLA 708 (988)
Q Consensus 663 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Ll 708 (988)
+++++|+..|.+++..+ ..|.||+++|...++.+++++|+
T Consensus 87 ~~~~~L~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 87 DVVKLLLKHGADVNARD------KDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHHHHcCCCCcccC------CCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999998877766 68999999999999999999874
No 75
>PHA02792 ankyrin-like protein; Provisional
Probab=99.30 E-value=7.1e-12 Score=149.60 Aligned_cols=119 Identities=16% Similarity=-0.029 Sum_probs=99.4
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCC--CcHHHHHHHcCChh---hhHHHHhCCCCCCccCCCCCcHhhHHHhcC
Q 001972 586 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGG--QGVVHLAAALGYEW---AMRPIIATGVSPNFRDARGRTALHWASYFG 660 (988)
Q Consensus 586 L~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G--~TpLH~AA~~G~~~---iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G 660 (988)
++.++..+ ...+++.|+++|+++|..|..| .||||+|+..+... ++++|+.+||++|.+|..|+||||+|+..+
T Consensus 343 ~~~Aa~~g-n~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~ 421 (631)
T PHA02792 343 YFQKFDNR-DPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESH 421 (631)
T ss_pred HHHHHHcC-CHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence 33444433 2346788999999999999875 69999987766543 578899999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHH----------cCcHHHHHHHHHcc
Q 001972 661 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS----------RGHKGIAGYLAEAD 711 (988)
Q Consensus 661 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~----------~G~~eiv~~Lle~G 711 (988)
+.+++++|+++|++++..+ ..|.||||+|+. ..+.+++++|+++|
T Consensus 422 n~eivelLLs~GADIN~kD------~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~ 476 (631)
T PHA02792 422 SVSLVEWLIDNGADINITT------KYGSTCIGICVILAHACIPEIAELYIKILEIILSKL 476 (631)
T ss_pred CHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988 699999999976 22356788899888
No 76
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=5.2e-12 Score=142.43 Aligned_cols=120 Identities=28% Similarity=0.237 Sum_probs=101.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHH
Q 001972 584 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 663 (988)
Q Consensus 584 ~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~e 663 (988)
-||..+++.++ .||+.++..--|+...+..|.|+||-|+-.||.+||++||+.|+|||..|.+||||||+||.+++..
T Consensus 553 LLLDaaLeGEl--dlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~ 630 (752)
T KOG0515|consen 553 LLLDAALEGEL--DLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP 630 (752)
T ss_pred HHHhhhhcchH--HHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence 44555555442 2445555556788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHH--HcCcHHHHHHHHHc
Q 001972 664 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS--SRGHKGIAGYLAEA 710 (988)
Q Consensus 664 iV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa--~~G~~eiv~~Lle~ 710 (988)
+++.|++.||.+-+.+- .++.||.+-+- ..|+.+|.+||...
T Consensus 631 ~ckqLVe~GaavfAsTl-----SDmeTa~eKCee~eeGY~~CsqyL~~v 674 (752)
T KOG0515|consen 631 MCKQLVESGAAVFASTL-----SDMETAAEKCEEMEEGYDQCSQYLYGV 674 (752)
T ss_pred HHHHHHhccceEEeeec-----ccccchhhhcchhhhhHHHHHHHHHHH
Confidence 99999999999988774 68899988654 46899999999764
No 77
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.29 E-value=8.7e-12 Score=132.23 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=100.0
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCc-cCCCCCcHhhHHHhc
Q 001972 581 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF-RDARGRTALHWASYF 659 (988)
Q Consensus 581 ~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~-~D~~G~TpLH~Aa~~ 659 (988)
.+..+|+..-++..... .. |+..--++|.+|..|+++|..|+..|+.++|++||+.|+|||. .+..++||||+||..
T Consensus 12 ~~~~Lle~i~Kndt~~a-~~-LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS 89 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAA-LA-LLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS 89 (396)
T ss_pred hhhHHHHHHccCcHHHH-HH-HHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence 33445554444433222 22 3333346899999999999999999999999999999999986 466799999999999
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 001972 660 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 709 (988)
Q Consensus 660 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle 709 (988)
|+.++.++|++.|+.+..++ .-|+|+..+|+.-||.+||.++-.
T Consensus 90 Gn~dvcrllldaGa~~~~vN------svgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 90 GNQDVCRLLLDAGARMYLVN------SVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred CCchHHHHHHhccCcccccc------chhhhHHHHHHHhcchHHHHHHhc
Confidence 99999999999999999988 699999999999999999988754
No 78
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.23 E-value=1.5e-11 Score=110.70 Aligned_cols=88 Identities=26% Similarity=0.318 Sum_probs=77.7
Q ss_pred HHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCC
Q 001972 601 KIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVED 680 (988)
Q Consensus 601 ~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd 680 (988)
.....|.++|.. ..|++|||+||-.|...++++|+.-||+++.+|+.|-|||.-|++.||.+||++|+..||+-....
T Consensus 20 ~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~- 97 (117)
T KOG4214|consen 20 QSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHA- 97 (117)
T ss_pred HHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeC-
Confidence 344456777743 389999999999999999999999999999999999999999999999999999999999987776
Q ss_pred CCCCCCCCCcHHHHH
Q 001972 681 PTPAFPGGQTAADLA 695 (988)
Q Consensus 681 ~~~~d~~G~TPLhlA 695 (988)
++|.+.+..+
T Consensus 98 -----PdG~~~~eat 107 (117)
T KOG4214|consen 98 -----PDGTALIEAT 107 (117)
T ss_pred -----CCchhHHhhc
Confidence 7888777654
No 79
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.21 E-value=1e-11 Score=103.99 Aligned_cols=50 Identities=34% Similarity=0.518 Sum_probs=16.8
Q ss_pred CCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHH
Q 001972 607 KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 656 (988)
Q Consensus 607 ad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~A 656 (988)
+++|..|..|.||||+||..|+.++|++|+..|++++.+|..|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 44444444444455544444444444444444444444444444444443
No 80
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.20 E-value=1.3e-11 Score=103.38 Aligned_cols=55 Identities=38% Similarity=0.663 Sum_probs=33.2
Q ss_pred HHhCC-CCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHH
Q 001972 635 IIATG-VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 695 (988)
Q Consensus 635 LL~~G-advn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlA 695 (988)
||++| +++|.+|..|.||||+||.+|+.++|++|++.|++++.+| ..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d------~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD------KDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---------TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc------CCCCCHHHhC
Confidence 67788 9999999999999999999999999999999999999998 6999999997
No 81
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.18 E-value=3.1e-11 Score=100.03 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=30.9
Q ss_pred CCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHH
Q 001972 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLV 669 (988)
Q Consensus 616 G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL 669 (988)
|+||||+||..|+.+++++|++.|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 456666666666666666666666666666666666666666666666666654
No 82
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.18 E-value=7.9e-11 Score=145.07 Aligned_cols=85 Identities=32% Similarity=0.488 Sum_probs=43.9
Q ss_pred HHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcC
Q 001972 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG 699 (988)
Q Consensus 620 LH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G 699 (988)
||.||..|+.+++++|+..|+++|.+|..|+||||+||..|+.++|++|+++|++++..+ ..|.||||+|+..|
T Consensus 86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d------~~G~TpLh~A~~~g 159 (664)
T PTZ00322 86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD------KDGKTPLELAEENG 159 (664)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCC
Confidence 444555555555555555555555555555555555555555555555555555554444 34555555555555
Q ss_pred cHHHHHHHHHc
Q 001972 700 HKGIAGYLAEA 710 (988)
Q Consensus 700 ~~eiv~~Lle~ 710 (988)
+.+++++|+++
T Consensus 160 ~~~iv~~Ll~~ 170 (664)
T PTZ00322 160 FREVVQLLSRH 170 (664)
T ss_pred cHHHHHHHHhC
Confidence 55555555544
No 83
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.18 E-value=3.7e-10 Score=117.14 Aligned_cols=126 Identities=25% Similarity=0.261 Sum_probs=104.7
Q ss_pred CCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCC-----HHHHHHHHHcCC---CCCccCC
Q 001972 609 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGR-----EETVIMLVKLGA---APGAVED 680 (988)
Q Consensus 609 ~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~-----~eiV~~LL~~GA---d~n~~dd 680 (988)
.+..+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..|+ .+++++|++.|+ ..+..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~- 144 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD- 144 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC-
Confidence 34567779999999999999999999999999999999999999999999999 999999999999 334334
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHH----HHhhHHHHHHHHHcC
Q 001972 681 PTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAA----ALAAEKANETAAQIG 746 (988)
Q Consensus 681 ~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa----~~~~~~~v~~Lle~~ 746 (988)
..|.||||+|+..|+.+++.+|++.| ++++..+.. |.++. ..+....+..++..+
T Consensus 145 -----~~g~tpl~~A~~~~~~~~~~~ll~~~-----~~~~~~~~~-g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 145 -----EDGNTPLHWAALNGDADIVELLLEAG-----ADPNSRNSY-GVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred -----CCCCchhHHHHHcCchHHHHHHHhcC-----CCCcccccC-CCcchhhhcccchHHHHHHHHhcC
Confidence 79999999999999999999999999 444444444 55444 444566666666643
No 84
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=99.14 E-value=1.9e-10 Score=140.19 Aligned_cols=262 Identities=18% Similarity=0.208 Sum_probs=156.7
Q ss_pred ceEEEEEcccCCCCCCCCCCceEEeeCCcccceEE----EecCeEEEecCC-----C--CCceeEEEEE-e-CC----Cc
Q 001972 425 ETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEV----LTDNVIRCQAPS-----H--AAGRVPFYIT-G-SN----RL 487 (988)
Q Consensus 425 gtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~----~~~gvLrC~~Pp-----h--~pG~V~l~Vt-~-~n----~~ 487 (988)
.-+++|+-.. ..|...=|++.|-..= ...+.+-|.+-. - .+|+.-=|.- + .| .+
T Consensus 402 ~qlf~I~DfS---------P~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~h~~G~V~l~V 472 (975)
T KOG0520|consen 402 EQLFTITDFS---------PEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQEGVLRCYAPPHEPGVVNLQV 472 (975)
T ss_pred cceeeeeccC---------cccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhhcceeeeecCccCCCeEEEEE
Confidence 5566666542 2466666666554332 345688887652 2 4465432221 1 12 34
Q ss_pred ccc--cceeeeeecCCCCCCCCccccCCCchHhHHHHHHHHhhccCCccccccccccchhhhhhHHHHhhhhCCCCCcch
Q 001972 488 ACS--EVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLYLDPERKWFDCTIEDCNKCKLKNTIYSMRGDSEKDWG 565 (988)
Q Consensus 488 ~~S--ev~~FeYr~~~~~~~~~~~~~~~~~~e~~Lq~Rl~~LL~~~~~~~~~~~s~~~~~k~~l~~ki~~l~~~d~~~~~ 565 (988)
.|+ ....||||+-..........+..++++..++|++..+|+.-... ......+.... ++-.
T Consensus 473 ~c~~~~~~~se~ref~~~~~~~~~~d~~s~~d~~~~~sl~~rl~~~~~r--------------~~~~~~s~~~~--~n~~ 536 (975)
T KOG0520|consen 473 TCRISGLACSEVREFAYLVQPSQQIDKLSWEDFLFQMSLLHRLETMLNR--------------KQSILSSKPST--ENTS 536 (975)
T ss_pred EecccceeeeeehheeecccCcccccccccccchhhhHHHHHHHHHHHH--------------hHhHhhccCCc--cccc
Confidence 565 78899999976665555555556789999999999987521110 01111111110 0000
Q ss_pred hhcccccccccCCchhhhHHHHHHHHhhhHHHHHHHHHhCC--CCCCccCCCCCcHHHHHHHcCChhhhHHHHhC-CCCC
Q 001972 566 RVDESPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEGG--KGPNVIDDGGQGVVHLAAALGYEWAMRPIIAT-GVSP 642 (988)
Q Consensus 566 ~l~e~l~~~~~~~~~~~~~lL~~al~~~l~e~Lv~~Lle~G--ad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~-Gadv 642 (988)
.. ... .+..+ +..-+.+|. ..++... .........|+|.||+++..++.++++.+++- |-..
T Consensus 537 ~~-----------~~~--~l~sk-v~~l~~~~~-~r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~ 601 (975)
T KOG0520|consen 537 DA-----------ESG--NLASK-VVHLLNEWA-YRLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD 601 (975)
T ss_pred cc-----------cch--hHHHH-HHHHHHHHH-HHHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc
Confidence 00 000 01111 111111222 1112111 12334556799999999999999999999986 7777
Q ss_pred CccCCCCCcHhhHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCC-CCCc
Q 001972 643 NFRDARGRTALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL-SSLT 720 (988)
Q Consensus 643 n~~D~~G~TpLH~Aa~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~-~~l~ 720 (988)
...|.+|.--+|+ |..++.+++-+|+. .|..++.+| ..|+||||+|+..|+..++..|++.|++... .+++
T Consensus 602 ~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D------~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps 674 (975)
T KOG0520|consen 602 LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD------RNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPS 674 (975)
T ss_pred hhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc------CCCCcccchHhhcCHHHHHHHHHHhccccccccCCC
Confidence 7778888888888 66667777666654 577888887 6999999999999999999999998877653 2333
Q ss_pred cccCcchHHHHHHh
Q 001972 721 VNENGMDNVAAALA 734 (988)
Q Consensus 721 ~~d~~~g~taa~~~ 734 (988)
-..-. |.+++.++
T Consensus 675 ~~~p~-g~ta~~la 687 (975)
T KOG0520|consen 675 PETPG-GKTAADLA 687 (975)
T ss_pred CCCCC-CCchhhhh
Confidence 22222 55555544
No 85
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=99.14 E-value=2e-10 Score=103.15 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=74.8
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceE-EEecCeEEEecCCCCCceeEEEEEeCCCcc
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAE-VLTDNVIRCQAPSHAAGRVPFYITGSNRLA 488 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae-~~~~gvLrC~~Pph~pG~V~l~Vt~~n~~~ 488 (988)
+.|++|+|.|++..||++|+|.|.+|.. ....+.|+||+...++. +++++.|+|.+|++.+|.+++.|..++...
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~----~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~~~~~~v~v~~~~~~~ 76 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGS----NSSNISVKIGGSQCTVITVVSSTQITCTSPALPSGNVNVSVTVNGQQI 76 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSES----SSTTEEEEETTEEEEEEGEEETTEEEEE--SCSSEEEEEEEEETTSEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecc----cCCceEEEECCEeeeEEEEECCcEEEEEECCCCCccEEEEEEECCcCe
Confidence 3699999999999999999999997722 25679999999999988 999999999999999999999999999788
Q ss_pred cccceeeee
Q 001972 489 CSEVREFEY 497 (988)
Q Consensus 489 ~Sev~~FeY 497 (988)
+++...|+|
T Consensus 77 ~~~~~~F~Y 85 (85)
T PF01833_consen 77 YSNNTSFTY 85 (85)
T ss_dssp EEEEEEEEE
T ss_pred EECCeeeEC
Confidence 899999998
No 86
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.12 E-value=4.2e-10 Score=134.25 Aligned_cols=156 Identities=20% Similarity=0.156 Sum_probs=118.8
Q ss_pred hhhhHHHHHHHH--hhhHHHHHHHHHhCCCC-CCc----cCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccC------
Q 001972 580 NSRDKLIQNLLR--NRLCEWLVWKIHEGGKG-PNV----IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD------ 646 (988)
Q Consensus 580 ~~~~~lL~~al~--~~l~e~Lv~~Lle~Gad-~n~----~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D------ 646 (988)
...+++||.++. ...+..++..|++.--. +|. -...|+||||+|..+.+.++|++|++.||||+++-
T Consensus 141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~ 220 (782)
T KOG3676|consen 141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFC 220 (782)
T ss_pred chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccC
Confidence 345678887776 44454555555543211 121 12369999999999999999999999999998741
Q ss_pred ---C--------------CCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 001972 647 ---A--------------RGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 709 (988)
Q Consensus 647 ---~--------------~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle 709 (988)
. .|..||.+||..++.+|+++|+++|||++++| ..|+|.||..+.+-..++-.++++
T Consensus 221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqD------S~GNTVLH~lVi~~~~~My~~~L~ 294 (782)
T KOG3676|consen 221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQD------SNGNTVLHMLVIHFVTEMYDLALE 294 (782)
T ss_pred cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccc------cCCChHHHHHHHHHHHHHHHHHHh
Confidence 1 37789999999999999999999999999988 799999999999888899999999
Q ss_pred ccCCCCCCCCccccCcchH----HHHHHhhHHHHHHHHHc
Q 001972 710 ADLSSHLSSLTVNENGMDN----VAAALAAEKANETAAQI 745 (988)
Q Consensus 710 ~Ga~~~~~~l~~~d~~~g~----taa~~~~~~~v~~Lle~ 745 (988)
+|++ ....+.|+. |- .|+-.|..++.+.++++
T Consensus 295 ~ga~---~l~~v~N~q-gLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 295 LGAN---ALEHVRNNQ-GLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred cCCC---ccccccccC-CCChHHHHHHhhhHHHHHHHHHh
Confidence 9966 234455555 55 45555667888888887
No 87
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.10 E-value=1.6e-10 Score=95.75 Aligned_cols=54 Identities=37% Similarity=0.580 Sum_probs=46.2
Q ss_pred CCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 001972 649 GRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLA 708 (988)
Q Consensus 649 G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Ll 708 (988)
|+||||+||..|+.+++++|++.|++++.+| ..|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d------~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD------EDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-------TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999999999999999999999987 69999999999999999999986
No 88
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.07 E-value=3.5e-10 Score=139.42 Aligned_cols=104 Identities=26% Similarity=0.299 Sum_probs=88.5
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHH
Q 001972 586 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 665 (988)
Q Consensus 586 L~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV 665 (988)
|+.++..+..+ .++.|++.|+++|..|..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus 86 L~~aa~~G~~~-~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv 164 (664)
T PTZ00322 86 LCQLAASGDAV-GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164 (664)
T ss_pred HHHHHHcCCHH-HHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence 44445555444 46889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-------CCCCCccCCCCCCCCCCCcHHHHHH
Q 001972 666 IMLVKL-------GAAPGAVEDPTPAFPGGQTAADLAS 696 (988)
Q Consensus 666 ~~LL~~-------GAd~n~~dd~~~~d~~G~TPLhlAa 696 (988)
++|+.+ |++++..+ ..|.+|+..+.
T Consensus 165 ~~Ll~~~~~~~~~ga~~~~~~------~~g~~~~~~~~ 196 (664)
T PTZ00322 165 QLLSRHSQCHFELGANAKPDS------FTGKPPSLEDS 196 (664)
T ss_pred HHHHhCCCcccccCCCCCccc------cCCCCccchhh
Confidence 999998 66666554 56766665443
No 89
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.07 E-value=9.7e-10 Score=100.07 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=70.8
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCC-CCceeEEEEEeCCCcc
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH-AAGRVPFYITGSNRLA 488 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph-~pG~V~l~Vt~~n~~~ 488 (988)
+.|+.|+|..||..|||.|+|.|.+|.. .....|+||+.+.....+++..|.|.+||+ .+|.|+|.|..++...
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~-----~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~~ 75 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNA-----GSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVKVLIDGARR 75 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCC-----CCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEEEEECCccc
Confidence 3699999999999999999999998854 345899999997777777899999999998 6799999999887643
Q ss_pred cccceeeeeec
Q 001972 489 CSEVREFEYRE 499 (988)
Q Consensus 489 ~Sev~~FeYr~ 499 (988)
+....|+|.+
T Consensus 76 -~~~~~F~Y~~ 85 (85)
T cd01179 76 -LAPLVFTYTE 85 (85)
T ss_pred -CCCccEEEeC
Confidence 3457899964
No 90
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=2.8e-10 Score=128.72 Aligned_cols=104 Identities=28% Similarity=0.246 Sum_probs=90.2
Q ss_pred HHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcC
Q 001972 620 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG 699 (988)
Q Consensus 620 LH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G 699 (988)
|.-|+..|..++|+-++..--|+...+..|.||||-|+..||.+||++||+.|+++|+.| .+||||||+|+.++
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D------SdGWTPLHCAASCN 627 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD------SDGWTPLHCAASCN 627 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc------CCCCchhhhhhhcC
Confidence 445888899999999999888999999999999999999999999999999999999988 79999999999999
Q ss_pred cHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh
Q 001972 700 HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 734 (988)
Q Consensus 700 ~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~ 734 (988)
+.-+++.|++.|+......+ .| +.||++.|
T Consensus 628 nv~~ckqLVe~GaavfAsTl--SD---meTa~eKC 657 (752)
T KOG0515|consen 628 NVPMCKQLVESGAAVFASTL--SD---METAAEKC 657 (752)
T ss_pred chHHHHHHHhccceEEeeec--cc---ccchhhhc
Confidence 99999999999966554333 22 33566555
No 91
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.02 E-value=9.5e-10 Score=131.29 Aligned_cols=124 Identities=26% Similarity=0.266 Sum_probs=110.2
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCcc--------CC---------------CCCcHHHHHHHcCChhhhHHHH
Q 001972 580 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVI--------DD---------------GGQGVVHLAAALGYEWAMRPII 636 (988)
Q Consensus 580 ~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~--------D~---------------~G~TpLH~AA~~G~~~iV~~LL 636 (988)
....+.||.|+.+...+ ++..|++.|||++.+ +. .|..||-+||-.+..+++++|+
T Consensus 182 Y~GqSaLHiAIv~~~~~-~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAE-LVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hcCcchHHHHHHhccHH-HHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 34567899999988665 568899999999862 11 2678999999999999999999
Q ss_pred hCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCC--CCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 001972 637 ATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA--PGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710 (988)
Q Consensus 637 ~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd--~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~ 710 (988)
++|||++++|.+|+|.||..+..-..++..+++++|++ ..+++ ..|.|||-+|+..|..++.+.+++.
T Consensus 261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N------~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN------NQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc------cCCCChHHHHHHhhhHHHHHHHHHh
Confidence 99999999999999999999999889999999999999 55555 7999999999999999999999997
No 92
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.97 E-value=5e-10 Score=134.51 Aligned_cols=159 Identities=18% Similarity=0.046 Sum_probs=131.8
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCc-cCCCCCcHhhHHHhcC
Q 001972 582 RDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF-RDARGRTALHWASYFG 660 (988)
Q Consensus 582 ~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~-~D~~G~TpLH~Aa~~G 660 (988)
.++.|-.+|..+ ++.++++|+.+|+++..+|+.|.+||.+|+..||..+|+.|+.+.++++. .|+.+.|+|.+||..|
T Consensus 757 ~~t~LT~acagg-h~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsgg 835 (2131)
T KOG4369|consen 757 IKTNLTSACAGG-HREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGG 835 (2131)
T ss_pred ccccccccccCc-cHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCC
Confidence 345566677666 66778899999999999999999999999999999999999999999986 5778999999999999
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHH
Q 001972 661 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANE 740 (988)
Q Consensus 661 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~ 740 (988)
+.++|++||.+|++-..++ -...|||.+|...|+.+||.+|+.+|...+-..-.-.+......|...++...+.
T Consensus 836 r~~vvelLl~~gankehrn------vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~ 909 (2131)
T KOG4369|consen 836 RTRVVELLLNAGANKEHRN------VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATL 909 (2131)
T ss_pred cchHHHHHHHhhccccccc------hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHH
Confidence 9999999999999877766 5779999999999999999999999944332211111111133777888999999
Q ss_pred HHHHcCC
Q 001972 741 TAAQIGV 747 (988)
Q Consensus 741 ~Lle~~a 747 (988)
.|++.+.
T Consensus 910 ~ll~~gs 916 (2131)
T KOG4369|consen 910 SLLQPGS 916 (2131)
T ss_pred HHhcccc
Confidence 9998876
No 93
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.95 E-value=2.2e-09 Score=114.29 Aligned_cols=116 Identities=21% Similarity=0.183 Sum_probs=99.1
Q ss_pred CCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHH
Q 001972 616 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 695 (988)
Q Consensus 616 G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlA 695 (988)
-..||.-+...|..+....||..--++|.+|..|.|+|..|+..|+.++|++||+.|||+|...+ ..+.||||.|
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh-----g~~YTpLmFA 86 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH-----GTLYTPLMFA 86 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc-----cccccHHHHH
Confidence 35789899999999999999987667999999999999999999999999999999999998764 7899999999
Q ss_pred HHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh----hHHHHHHH
Q 001972 696 SSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETA 742 (988)
Q Consensus 696 a~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~----~~~~v~~L 742 (988)
+..|+.++.++|++.| +.+..-+.. |++|+..+ +.+.|..+
T Consensus 87 ALSGn~dvcrllldaG-----a~~~~vNsv-grTAaqmAAFVG~H~CV~iI 131 (396)
T KOG1710|consen 87 ALSGNQDVCRLLLDAG-----ARMYLVNSV-GRTAAQMAAFVGHHECVAII 131 (396)
T ss_pred HHcCCchHHHHHHhcc-----Cccccccch-hhhHHHHHHHhcchHHHHHH
Confidence 9999999999999999 445555565 77766655 45555555
No 94
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=98.94 E-value=5.2e-09 Score=95.14 Aligned_cols=84 Identities=24% Similarity=0.320 Sum_probs=69.2
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEee-CCcccceEEEecCeEEEecCCCCC---ceeEEEEEeCC
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMF-GEIEVPAEVLTDNVIRCQAPSHAA---GRVPFYITGSN 485 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~F-Gd~~Vpae~~~~gvLrC~~Pph~p---G~V~l~Vt~~n 485 (988)
+.|+.|+|.+|+..|||+|+|.|.++... ..+.|+| |+.......+++..|.|.+|++.. |.|.|.|...+
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~-----~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~ 75 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSG-----SNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVEVTVDRGN 75 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCC-----CcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEEEEEeCCC
Confidence 36999999999999999999999977442 2699999 898777777799999999999843 88888887655
Q ss_pred Ccccccceeeeee
Q 001972 486 RLACSEVREFEYR 498 (988)
Q Consensus 486 ~~~~Sev~~FeYr 498 (988)
....+....|+|.
T Consensus 76 ~~~~~~~~~F~Y~ 88 (89)
T cd00102 76 GGITSSPLTFTYV 88 (89)
T ss_pred CcccCCCccEEee
Confidence 3456777889996
No 95
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.75 E-value=5.5e-09 Score=125.86 Aligned_cols=126 Identities=21% Similarity=0.152 Sum_probs=111.8
Q ss_pred CCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHH
Q 001972 615 GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADL 694 (988)
Q Consensus 615 ~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhl 694 (988)
+-.|+|..||..||.++|++|+..|+++..+|..|.+||.+|+-.||..+|+.|+.+.+++.+..| +.+.|+|.+
T Consensus 756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsd-----rtkdt~lSl 830 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSD-----RTKDTMLSL 830 (2131)
T ss_pred cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcc-----cccCceEEE
Confidence 346899999999999999999999999999999999999999999999999999999999999875 899999999
Q ss_pred HHHcCcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHhhHHHHHHHHHcCC
Q 001972 695 ASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIGV 747 (988)
Q Consensus 695 Aa~~G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~~~~~v~~Lle~~a 747 (988)
||..|..++|++||.+|++....+ +.|-.....+..-+..++|..|+..|+
T Consensus 831 acsggr~~vvelLl~~gankehrn--vsDytPlsla~Sggy~~iI~~llS~Gs 881 (2131)
T KOG4369|consen 831 ACSGGRTRVVELLLNAGANKEHRN--VSDYTPLSLARSGGYTKIIHALLSSGS 881 (2131)
T ss_pred ecCCCcchHHHHHHHhhccccccc--hhhcCchhhhcCcchHHHHHHHhhccc
Confidence 999999999999999996654333 334333556777788999999999997
No 96
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.68 E-value=1.3e-07 Score=86.74 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=64.8
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCC-CCceeEEEEEeCCCc-
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH-AAGRVPFYITGSNRL- 487 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph-~pG~V~l~Vt~~n~~- 487 (988)
+.|+.|+|..|+..|||.|+|.|.+|... .....|.||+.+.....+.+..|.|.+|+. .+|..++.|..++..
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~----~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~ 76 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSG----SPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVEVTVDGANV 76 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCC----CceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEEEEECCccc
Confidence 37999999999999999999999977442 247999999997777677899999999997 443344445444442
Q ss_pred --ccccceeeeee
Q 001972 488 --ACSEVREFEYR 498 (988)
Q Consensus 488 --~~Sev~~FeYr 498 (988)
..+....|+|.
T Consensus 77 ~~~~~~~~~F~Y~ 89 (90)
T cd00603 77 SARVLSNTTFTYV 89 (90)
T ss_pred cccccCCcceEEe
Confidence 24555678885
No 97
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.66 E-value=6.2e-08 Score=109.46 Aligned_cols=95 Identities=29% Similarity=0.383 Sum_probs=86.0
Q ss_pred CCccCCCCCcH------HHHHHHcCChhhhHHHHhCCCCCCccCCC-CCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCC
Q 001972 609 PNVIDDGGQGV------VHLAAALGYEWAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGAVEDP 681 (988)
Q Consensus 609 ~n~~D~~G~Tp------LH~AA~~G~~~iV~~LL~~Gadvn~~D~~-G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~ 681 (988)
+..+|.+|.|. ||-.++.|+.+.+--||..||++|..+.. |.||||.||..|+..-+++|+-+|||+++.|
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d-- 197 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD-- 197 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC--
Confidence 34567777664 89999999999998999999999998765 9999999999999999999999999999988
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 001972 682 TPAFPGGQTAADLASSRGHKGIAGYLAE 709 (988)
Q Consensus 682 ~~~d~~G~TPLhlAa~~G~~eiv~~Lle 709 (988)
.+|.||+.+|...||.++++.|++
T Consensus 198 ----~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 198 ----SSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred ----CCCCcHHHHHHhcCchHHHHHHHH
Confidence 799999999999999999988887
No 98
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.62 E-value=1.7e-07 Score=87.07 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=68.0
Q ss_pred EEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCc-ccce--EEEecCeEEEecCCCC-C-ceeEEEEEeCC
Q 001972 411 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPA--EVLTDNVIRCQAPSHA-A-GRVPFYITGSN 485 (988)
Q Consensus 411 ~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~-~Vpa--e~~~~gvLrC~~Pph~-p-G~V~l~Vt~~n 485 (988)
.|+.|+|..||..|||+|+|.|.+|.... ......|++|+. +.+. ...+...|.|.+||+. + +.++|.|..++
T Consensus 2 ~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~--~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~ 79 (94)
T cd01180 2 VITEFFPLSGPLEGGTRLTICGSNLGLRK--NDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGH 79 (94)
T ss_pred eeEEEeCCCCCCCCCEEEEEEEEcCCCCc--ccceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECC
Confidence 69999999999999999999999775531 135688999999 4333 3567789999999984 3 78888888777
Q ss_pred Cc-ccccceeeeeec
Q 001972 486 RL-ACSEVREFEYRE 499 (988)
Q Consensus 486 ~~-~~Sev~~FeYr~ 499 (988)
.. .++.-..|+|.+
T Consensus 80 ~~~~~~~~~~F~Y~~ 94 (94)
T cd01180 80 GSFRTESSEGFSFVD 94 (94)
T ss_pred ceecccccCceEEeC
Confidence 64 455567899864
No 99
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.57 E-value=2.5e-07 Score=106.38 Aligned_cols=96 Identities=27% Similarity=0.337 Sum_probs=76.5
Q ss_pred chhhhHHHHHHHHhhhHHHHHHHHHhCCCCC--C--ccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhh
Q 001972 579 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGP--N--VIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALH 654 (988)
Q Consensus 579 ~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~--n--~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH 654 (988)
.....+++.....+.+...+ +|+.+|... | .-+.+|+|+||+||..|+..+.++|+.+|+|+..+|.+|+|||.
T Consensus 622 ~~lgqqLl~A~~~~Dl~t~~--lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~ 699 (749)
T KOG0705|consen 622 EPLGQQLLRAVAAEDLQTAI--LLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALF 699 (749)
T ss_pred CchHHHHHHHHHHHHHHHHH--HHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhh
Confidence 34455666666665554433 466777543 3 24567899999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCC
Q 001972 655 WASYFGREETVIMLVKLGAAPG 676 (988)
Q Consensus 655 ~Aa~~G~~eiV~~LL~~GAd~n 676 (988)
||-..|..+|+.+|+.+|+...
T Consensus 700 yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 700 YARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hHhhcccHHHHHHHHHcCCCcc
Confidence 9999999999999999997643
No 100
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.53 E-value=3.4e-08 Score=116.87 Aligned_cols=83 Identities=24% Similarity=0.371 Sum_probs=78.5
Q ss_pred CCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCC-CCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCC
Q 001972 609 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPG 687 (988)
Q Consensus 609 ~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~-G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~ 687 (988)
.|++|..|+|+||+|+..|...++++||.+|++++.+|.. |+||||-|..+|+.+|+-+||.+|+...+.| ..
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D------ke 118 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD------KE 118 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec------cc
Confidence 5779999999999999999999999999999999999986 9999999999999999999999999998888 79
Q ss_pred CCcHHHHHHH
Q 001972 688 GQTAADLASS 697 (988)
Q Consensus 688 G~TPLhlAa~ 697 (988)
|..||+.-++
T Consensus 119 glsplq~~~r 128 (1267)
T KOG0783|consen 119 GLSPLQFLSR 128 (1267)
T ss_pred CCCHHHHHhh
Confidence 9999998766
No 101
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=98.52 E-value=3.7e-07 Score=83.56 Aligned_cols=84 Identities=24% Similarity=0.261 Sum_probs=66.0
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEE--ecCeEEEecCCC--CCceeEE-EEEeC
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVL--TDNVIRCQAPSH--AAGRVPF-YITGS 484 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~--~~gvLrC~~Pph--~pG~V~l-~Vt~~ 484 (988)
+.|+.|+|.+|+..|||+|+|+|..|.. .....|.|+...+++.+. .+..|.|.+|+. .++.++| .|...
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-----~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~ 76 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDS-----ISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVREVGLR 76 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCc-----ceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEEEEEe
Confidence 4799999999999999999999997644 456788888766777776 578999999985 5788888 77776
Q ss_pred CCcccccceeeeee
Q 001972 485 NRLACSEVREFEYR 498 (988)
Q Consensus 485 n~~~~Sev~~FeYr 498 (988)
+...-++...|+|.
T Consensus 77 ~~~~~~~~~~f~y~ 90 (90)
T smart00429 77 NGGVPSSPQPFTYV 90 (90)
T ss_pred CCCccCcccCeEEC
Confidence 65543444567773
No 102
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.51 E-value=9.7e-08 Score=107.59 Aligned_cols=93 Identities=30% Similarity=0.285 Sum_probs=85.0
Q ss_pred CCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHc-CCCCCccCCCCCCCCCCCcH
Q 001972 613 DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAAPGAVEDPTPAFPGGQTA 691 (988)
Q Consensus 613 D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~-GAd~n~~dd~~~~d~~G~TP 691 (988)
+.++...+++||..|....++-+.-.|.|++.+|.+.+|+||.||..|+.+++++|++. +.+++.+| .+|+||
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD------Rw~rtP 576 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD------RWGRTP 576 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh------ccCCCc
Confidence 44567889999999999999999999999999999999999999999999999999975 66777666 899999
Q ss_pred HHHHHHcCcHHHHHHHHHcc
Q 001972 692 ADLASSRGHKGIAGYLAEAD 711 (988)
Q Consensus 692 LhlAa~~G~~eiv~~Lle~G 711 (988)
|+-|..-+|.+++++|-+.-
T Consensus 577 lDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 577 LDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred chHhHhcCcHHHHHHHHHHh
Confidence 99999999999999998865
No 103
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.48 E-value=1.4e-06 Score=107.20 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=92.5
Q ss_pred hHHH--hhhhhHHHHHHHHHHhhhhhhhhhcc--CCCchhhHHHHHHHhhhhhhcccchh---h-------------HHH
Q 001972 763 LAAV--RKSAHAAALIQQAFRVRSFRHRQSIQ--SSDDVSEVSVDLVALGSLNKVSKMIH---F-------------EDY 822 (988)
Q Consensus 763 L~Av--R~a~~AA~rIQ~aFR~~s~R~r~L~~--~~~d~~e~~~sIla~q~~~r~~~~~~---~-------------~~~ 822 (988)
|.++ ..|+++.+..+..|. .|++.|.. ...+....|..|+.. ....+++.+. | ...
T Consensus 596 LetiRiS~~g~P~r~~~~Ef~---~r~~~L~~~~~~~~~~~~~~~il~~-~~~~~yq~g~tkif~r~gq~~~le~~R~~v 671 (862)
T KOG0160|consen 596 LETIRISCAGFPTRWTFIEFV---NRYGILMPNDSASDDLSLCKVILEK-LGLELYQIGKTKIFLRAGQIAVLEARRSDV 671 (862)
T ss_pred ehhheeccccCCccccHHHHH---HHHhhcCcchhcccchHHHHHHHHH-hchhceeeeeeeeeeccchhHHHHHHHHHH
Confidence 4444 458889999999998 89998876 223336778888763 2211111111 1 224
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001972 823 LHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGL 890 (988)
Q Consensus 823 ~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l~~sv~~lqk~~~rwr~~r~~l 890 (988)
+..+++.||+.+|||..||.|+.+|+.++.||+.+||+++|+... ..++++.+|+..+.|..+|+..
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~ 738 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYR 738 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999999999554 6788888999998888776544
No 104
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.37 E-value=9.3e-07 Score=101.03 Aligned_cols=122 Identities=24% Similarity=0.343 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCC--CCccCCCCCcHhhHHHhc
Q 001972 582 RDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVS--PNFRDARGRTALHWASYF 659 (988)
Q Consensus 582 ~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gad--vn~~D~~G~TpLH~Aa~~ 659 (988)
.+++|+.++...++... .+..+|.++-.++.+..+.||+|+..|+-++|++||++|-. +++.|..|.|+||-||..
T Consensus 867 seeil~av~~~D~~klq--E~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~ 944 (1004)
T KOG0782|consen 867 SEEILRAVLSSDLMKLQ--ETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ 944 (1004)
T ss_pred cHHHHHHHHhccHHHHH--HHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh
Confidence 45667777766655422 24456778888899999999999999999999999999865 467888999999999999
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcc
Q 001972 660 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 711 (988)
Q Consensus 660 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~G 711 (988)
++..+..+|++.||.....| ..|.||-.-|-..|..+++.||-...
T Consensus 945 ~~r~vc~~lvdagasl~ktd------~kg~tp~eraqqa~d~dlaayle~rq 990 (1004)
T KOG0782|consen 945 RNRAVCQLLVDAGASLRKTD------SKGKTPQERAQQAGDPDLAAYLESRQ 990 (1004)
T ss_pred cchHHHHHHHhcchhheecc------cCCCChHHHHHhcCCchHHHHHhhhh
Confidence 99999999999999987766 79999999999999999999997643
No 105
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.34 E-value=1.7e-06 Score=81.24 Aligned_cols=73 Identities=22% Similarity=0.465 Sum_probs=58.0
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCc-ccceEEEecCeEEEecCCCC-------CceeEEEE
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPAEVLTDNVIRCQAPSHA-------AGRVPFYI 481 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~-~Vpae~~~~gvLrC~~Pph~-------pG~V~l~V 481 (988)
++|++|+|.|+|.+|||.|+|+|.+|... ....+.++||+. .++..+.++..+.|.+|+.. ++..++.+
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~---q~p~~~V~~~~~~~~~C~v~s~~~i~C~tP~~~~~~~~~~~~~~~~~~ 77 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTV---QEPRIRVKYGGVEKTSCKVRNSTLMTCPAPSLALLNRSPEPGERPVEF 77 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcc---cccEEEEEECCceeccceeCCCCEEEeCCCCCcccccccCCCCcCeEE
Confidence 37999999999999999999999988653 345799999996 45666778899999999863 25566666
Q ss_pred EeCC
Q 001972 482 TGSN 485 (988)
Q Consensus 482 t~~n 485 (988)
..++
T Consensus 78 ~fd~ 81 (99)
T cd01181 78 GLDG 81 (99)
T ss_pred EEec
Confidence 5544
No 106
>PF13606 Ank_3: Ankyrin repeat
Probab=98.33 E-value=5e-07 Score=65.94 Aligned_cols=29 Identities=38% Similarity=0.444 Sum_probs=20.6
Q ss_pred CCCcHhhHHHhcCCHHHHHHHHHcCCCCC
Q 001972 648 RGRTALHWASYFGREETVIMLVKLGAAPG 676 (988)
Q Consensus 648 ~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n 676 (988)
+|+||||+||..|+.++|++||++|+++|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36777777777777777777777777665
No 107
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=98.29 E-value=4.4e-06 Score=75.46 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=66.8
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCCCCceeEEEEEeCCCccc
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLAC 489 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph~pG~V~l~Vt~~n~~~~ 489 (988)
+.|..++|.-|.. |++|+|.|..|.+ ..-.|+||+.+.+...|++..|.|.+|.+.+|.+++.|.-.++..
T Consensus 3 P~I~~i~P~~g~~--G~~VtI~G~gFg~------~~~~V~~g~~~a~v~s~sdt~I~~~vP~~~aG~~~V~V~~~~G~~- 73 (81)
T cd02849 3 PLIGHVGPMMGKA--GNTVTISGEGFGS------APGTVYFGTTAATVISWSDTRIVVTVPNVPAGNYDVTVKTADGAT- 73 (81)
T ss_pred CEEeeEcCCCCCC--CCEEEEEEECCCC------CCcEEEECCEEeEEEEECCCEEEEEeCCCCCceEEEEEEeCCCcc-
Confidence 4799999999987 8899999996643 235799999999999999999999999999999999999776655
Q ss_pred ccceeeee
Q 001972 490 SEVREFEY 497 (988)
Q Consensus 490 Sev~~FeY 497 (988)
|+...|+|
T Consensus 74 Sn~~~f~~ 81 (81)
T cd02849 74 SNGYNFEV 81 (81)
T ss_pred cCcEeeEC
Confidence 55556764
No 108
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.26 E-value=1.1e-06 Score=65.31 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=23.4
Q ss_pred CCCcHhhHHHhcCCHHHHHHHHHcCCCCCccC
Q 001972 648 RGRTALHWASYFGREETVIMLVKLGAAPGAVE 679 (988)
Q Consensus 648 ~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~d 679 (988)
+|+||||+||..|+.+++++|+++|++++.+|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 46777777777777777777777777777665
No 109
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.23 E-value=5.1e-07 Score=107.24 Aligned_cols=81 Identities=25% Similarity=0.255 Sum_probs=75.4
Q ss_pred CCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCCCCCcc
Q 001972 642 PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTV 721 (988)
Q Consensus 642 vn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~~~l~~ 721 (988)
.|.+|..|+|+||+|+..|...++++||.+|++++.+|. ..|+||||-|...|+.+|+-+|+.+| ..+.+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~-----ESG~taLHRaiyyG~idca~lLL~~g-----~SL~i 114 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDE-----ESGYTALHRAIYYGNIDCASLLLSKG-----RSLRI 114 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccc-----cccchHhhHhhhhchHHHHHHHHhcC-----CceEE
Confidence 678999999999999999999999999999999999996 79999999999999999999999999 88889
Q ss_pred ccCcchHHHHHH
Q 001972 722 NENGMDNVAAAL 733 (988)
Q Consensus 722 ~d~~~g~taa~~ 733 (988)
+|++ |..|+..
T Consensus 115 ~Dke-glsplq~ 125 (1267)
T KOG0783|consen 115 KDKE-GLSPLQF 125 (1267)
T ss_pred eccc-CCCHHHH
Confidence 9998 8777654
No 110
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.21 E-value=4.8e-05 Score=94.01 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhccCCCchhhHHHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001972 771 HAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIHFEDYLHFAAIKIQQKYRGWKGRKDFLKIRNHI 850 (988)
Q Consensus 771 ~AA~rIQ~aFR~~s~R~r~L~~~~~d~~e~~~sIla~q~~~r~~~~~~~~~~~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~ 850 (988)
.++..||..+|.+..|+++ ......++.+|...+|..+++ ...+..||+.||+.+|+|..||+|+..+.++
T Consensus 674 ~~~~~iq~~~r~~~~r~~f--------~~~r~~~~~~Q~~~rG~~~r~-~~~~~~aai~~q~~~r~~~~r~~y~~~~~~~ 744 (862)
T KOG0160|consen 674 AAKVLIQRQIRGYLARKKF--------LQLRSAVIIIQAYSRGVLARR-ETEREAAAIGIQKECRSYLNRRRYRALIPAS 744 (862)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3567799999999999998 455566666677778888876 3348889999999999999999999999999
Q ss_pred HHHHHHHHhHHHHH
Q 001972 851 VKLQAHVRGHQVRK 864 (988)
Q Consensus 851 v~IQa~~Rg~~aRk 864 (988)
+.||+.+||+.+|.
T Consensus 745 ~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 745 ITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999998
No 111
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.19 E-value=3.2e-05 Score=98.17 Aligned_cols=175 Identities=19% Similarity=0.175 Sum_probs=99.4
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhccCC---------CchhhHHHHHHHh-hhhhhcccchh---h-------------H
Q 001972 767 RKSAHAAALIQQAFRVRSFRHRQSIQSS---------DDVSEVSVDLVAL-GSLNKVSKMIH---F-------------E 820 (988)
Q Consensus 767 R~a~~AA~rIQ~aFR~~s~R~r~L~~~~---------~d~~e~~~sIla~-q~~~r~~~~~~---~-------------~ 820 (988)
+.|+.|.+..+..|+ .||+.|.+.. .+...+|..|+.- ..-...++.+. | +
T Consensus 665 sraGFP~R~~f~EFv---~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd 741 (1463)
T COG5022 665 SRAGFPSRWTFDEFV---QRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRD 741 (1463)
T ss_pred ccccCchhhhHHHHH---HHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHH
Confidence 679999999999999 9999998732 1225667777742 11101111111 1 2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------HHHHHHHhHHHHHHHHHHHHHHHH
Q 001972 821 DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIV-------------------------KLQAHVRGHQVRKQYKKVVWSVSI 875 (988)
Q Consensus 821 ~~~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v-------------------------~IQa~~Rg~~aRk~y~~l~~sv~~ 875 (988)
...+..|+.||++|||+..||+|+...+.+. +||.+||....|+.|+.....+..
T Consensus 742 ~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~ 821 (1463)
T COG5022 742 AKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIK 821 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHH
Confidence 3578899999999999999999998765554 455555555555555555555555
Q ss_pred HHHHHHHHHHHHhhh-hhhhccccccccccccccccHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q 001972 876 VEKAILRWRRRGSGL-RGFRVGNSTANVASENEKTDEYEFLRIG-RKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKF 953 (988)
Q Consensus 876 lqk~~~rwr~~r~~l-r~~~~~~~~~~~~~~~~~~~~~~~L~~~-rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el 953 (988)
+++-+.+-+..+... ..+...+.. --..+-+.. .+.....+.+.++.+|+.+|...|++++..++.+.
T Consensus 822 lq~~i~~~~~~~~~~e~~~~~~~~~----------L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~ 891 (1463)
T COG5022 822 LQKTIKREKKLRETEEVEFSLKAEV----------LIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDV 891 (1463)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 554443322222210 000000000 000010000 11111233455666888888888888888887554
Q ss_pred H
Q 001972 954 E 954 (988)
Q Consensus 954 ~ 954 (988)
+
T Consensus 892 ~ 892 (1463)
T COG5022 892 K 892 (1463)
T ss_pred H
Confidence 3
No 112
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.17 E-value=5.6e-06 Score=94.05 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=76.2
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcC
Q 001972 582 RDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 660 (988)
Q Consensus 582 ~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~-~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G 660 (988)
...-||..++.+..+..+. |+..|+++|..+. .|.||||.||..|..--+++|+-+|||++..|.+|.||+.+|-..|
T Consensus 133 LsrQLhasvRt~nlet~LR-ll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~g 211 (669)
T KOG0818|consen 133 LSKQLHSSVRTGNLETCLR-LLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGG 211 (669)
T ss_pred HHHHHHHHhhcccHHHHHH-HHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcC
Confidence 3445677777777777665 6778999999875 5999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 001972 661 REETVIMLVK 670 (988)
Q Consensus 661 ~~eiV~~LL~ 670 (988)
|.++..-|++
T Consensus 212 H~~laeRl~e 221 (669)
T KOG0818|consen 212 HHELAERLVE 221 (669)
T ss_pred chHHHHHHHH
Confidence 9988777665
No 113
>PF13606 Ank_3: Ankyrin repeat
Probab=98.13 E-value=2.5e-06 Score=62.33 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHcCChhhhHHHHhCCCCCCc
Q 001972 615 GGQGVVHLAAALGYEWAMRPIIATGVSPNF 644 (988)
Q Consensus 615 ~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~ 644 (988)
+|+||||+||..|+.++|++||++|+|||.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999984
No 114
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.12 E-value=2.9e-06 Score=63.11 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHcCChhhhHHHHhCCCCCCccCC
Q 001972 615 GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDA 647 (988)
Q Consensus 615 ~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~ 647 (988)
+|.||||+||..|+.++|++||.+|++++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 115
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.12 E-value=5.3e-06 Score=95.76 Aligned_cols=89 Identities=24% Similarity=0.190 Sum_probs=76.1
Q ss_pred HHHHHHcCChhhhHHHHhCCCCC----CccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHH
Q 001972 620 VHLAAALGYEWAMRPIIATGVSP----NFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 695 (988)
Q Consensus 620 LH~AA~~G~~~iV~~LL~~Gadv----n~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlA 695 (988)
|.-|........+-+||.+|... ...+.+|+||||+||..|++.+.++|+=+|+|+.++| ..|+|||.||
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rd------a~g~t~l~ya 701 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARD------AHGRTALFYA 701 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecc------cCCchhhhhH
Confidence 44566666777788899887543 2356678999999999999999999999999999988 6999999999
Q ss_pred HHcCcHHHHHHHHHccCCC
Q 001972 696 SSRGHKGIAGYLAEADLSS 714 (988)
Q Consensus 696 a~~G~~eiv~~Lle~Ga~~ 714 (988)
...|..+|+.+|+.+|+..
T Consensus 702 r~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 702 RQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred hhcccHHHHHHHHHcCCCc
Confidence 9999999999999999543
No 116
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=98.09 E-value=3.7e-05 Score=90.82 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=83.5
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhccCC------CchhhHHHHHHHhhhhhhcccc-h---------h--h------HH
Q 001972 766 VRKSAHAAALIQQAFRVRSFRHRQSIQSS------DDVSEVSVDLVALGSLNKVSKM-I---------H--F------ED 821 (988)
Q Consensus 766 vR~a~~AA~rIQ~aFR~~s~R~r~L~~~~------~d~~e~~~sIla~q~~~r~~~~-~---------~--~------~~ 821 (988)
+|.|+.|.++.+..|. .|||.+.++- .+.++.+..++.. +...+.-+ + + | ..
T Consensus 618 VrrAgfahRq~Y~~FL---~RYKmi~~~TWPn~~~g~dkd~v~vL~e~-~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~ 693 (1001)
T KOG0164|consen 618 VRRAGFAHRQPYERFL---LRYKMICESTWPNWRGGSDKDGVKVLLEH-LGLAGDVAFGRTKIFIRSPRTLFALEEQRAE 693 (1001)
T ss_pred hhhcccccccchHHHH---HHHHhhCcccCCCCCCCCchhHHHHHHHH-hccchhhhcCceeEEEecchhHhhHHHHHHH
Confidence 4889999999999999 9999997743 2224555555543 11111000 0 0 1 33
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001972 822 YLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFR 894 (988)
Q Consensus 822 ~~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l~~sv~~lqk~~~rwr~~r~~lr~~~ 894 (988)
++-.-++.||+.||||.+|.+|+.+|+.++.|+ +||.+ ++.+.+..|+..++.|++.|..-+.++
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~-------K~ks~v~el~~~~rg~k~~r~ygk~~~ 758 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRY-------KLKSYVQELQRRFRGAKQMRDYGKSIR 758 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHHhhhhccccCCCCC
Confidence 567789999999999999999999999888888 88854 345667777888888888776655444
No 117
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.06 E-value=7e-06 Score=94.66 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=54.7
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHc
Q 001972 605 GGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL 671 (988)
Q Consensus 605 ~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~ 671 (988)
.+..++..|..|.||||+|+..|+...++.|+.+|+++..+|..||+|||-|+..|+..++..++.+
T Consensus 44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 4556777888888888888888888888888888888888888888888888888888877777654
No 118
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.04 E-value=7.7e-06 Score=94.31 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=75.4
Q ss_pred cHHHHHHHcCChhhhHHH--HhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHH
Q 001972 618 GVVHLAAALGYEWAMRPI--IATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 695 (988)
Q Consensus 618 TpLH~AA~~G~~~iV~~L--L~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlA 695 (988)
-|||+++.....+-+..+ .+.+..++.+|..|.||||+|+..||...++.|+.+||++..++ ..|++|||-|
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN------~~gWs~L~EA 95 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKN------NEGWSPLHEA 95 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccc------cccccHHHHH
Confidence 469999988776655443 34467889999999999999999999999999999999998888 6999999999
Q ss_pred HHcCcHHHHHHHHHcc
Q 001972 696 SSRGHKGIAGYLAEAD 711 (988)
Q Consensus 696 a~~G~~eiv~~Lle~G 711 (988)
+..|+..++..++.+-
T Consensus 96 v~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 96 VSTGNEQIITEVLRHL 111 (560)
T ss_pred HHcCCHHHHHHHHHHh
Confidence 9999998887777654
No 119
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=97.94 E-value=6.1e-05 Score=68.09 Aligned_cols=79 Identities=23% Similarity=0.239 Sum_probs=66.1
Q ss_pred EEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCCCCceeEEEEEeCCCcccc
Q 001972 411 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLACS 490 (988)
Q Consensus 411 ~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph~pG~V~l~Vt~~n~~~~S 490 (988)
.|..++|.-|. -|+.|+|.|..|.+ ..-.|+||+.+.+...|++..|.|.+|.+.+|..++.|...++.. |
T Consensus 2 ~I~~i~P~~g~--pG~~VtI~G~gFg~------~~~~V~~g~~~a~v~s~sdt~I~~~VP~~~~g~~~i~V~~~~G~~-S 72 (81)
T cd00604 2 LIGSVGPVMGK--PGNTVTISGEGFGS------TGGTVYFGGTAAEVLSWSDTSIVVEVPRVAPGNYNISVTTVDGVT-S 72 (81)
T ss_pred eEeeEcCCCCC--CCCEEEEEEECCCC------CccEEEECCEEEEEEEECCCEEEEEeCCCCCCceEEEEEECCCcc-c
Confidence 68899999887 68899999995533 125699999998888999999999999999999999999766665 5
Q ss_pred cceeeeee
Q 001972 491 EVREFEYR 498 (988)
Q Consensus 491 ev~~FeYr 498 (988)
+...|+|.
T Consensus 73 n~~~f~~l 80 (81)
T cd00604 73 NGYNFEVL 80 (81)
T ss_pred CcEeEEEc
Confidence 66668884
No 120
>PTZ00014 myosin-A; Provisional
Probab=97.89 E-value=3.2e-05 Score=96.86 Aligned_cols=95 Identities=18% Similarity=0.094 Sum_probs=70.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhccC-----CCchhhHHHHHHHhhhhhh--cccchh---h-------------HHH-
Q 001972 767 RKSAHAAALIQQAFRVRSFRHRQSIQS-----SDDVSEVSVDLVALGSLNK--VSKMIH---F-------------EDY- 822 (988)
Q Consensus 767 R~a~~AA~rIQ~aFR~~s~R~r~L~~~-----~~d~~e~~~sIla~q~~~r--~~~~~~---~-------------~~~- 822 (988)
+.++++.++.+..|+ .||+.|... ..+.++.|..|+.. +.+. ..+-+. | +.+
T Consensus 698 ~r~Gyp~R~~f~~F~---~rY~~L~~~~~~~~~~d~k~~~~~il~~-~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~ 773 (821)
T PTZ00014 698 RQLGFSYRRTFAEFL---SQFKYLDLAVSNDSSLDPKEKAEKLLER-SGLPKDSYAIGKTMVFLKKDAAKELTQIQREKL 773 (821)
T ss_pred HhcCCcccccHHHHH---HHHHhcCcccccCCCCCHHHHHHHHHHH-cCCCcccEEecCCeEEEcCcHHHHHHHHHHHHH
Confidence 789999999999999 899988542 12446778887753 1100 001110 1 112
Q ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001972 823 --LHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQ 865 (988)
Q Consensus 823 --~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~ 865 (988)
...+++.||+.||||++||.|+++++++++||++||||++++.
T Consensus 774 ~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 774 AAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2357899999999999999999999999999999999999875
No 121
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.86 E-value=1.1e-05 Score=91.48 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=72.6
Q ss_pred HHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhC-CCCCCccCCCCCcHhhHHHhcCCHHHHHH
Q 001972 589 LLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIAT-GVSPNFRDARGRTALHWASYFGREETVIM 667 (988)
Q Consensus 589 al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~-Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~ 667 (988)
+.+.+....+ +.+.-.|.|++.+|.+.+|+||.||..|+..+|++||.. +++++.+|..|+|||.-|..++|.+++++
T Consensus 513 aa~~GD~~al-rRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~ 591 (622)
T KOG0506|consen 513 AAKNGDLSAL-RRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKL 591 (622)
T ss_pred hhhcCCHHHH-HHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHH
Confidence 3444444444 345556899999999999999999999999999999975 99999999999999999999999999999
Q ss_pred HHHcCCC
Q 001972 668 LVKLGAA 674 (988)
Q Consensus 668 LL~~GAd 674 (988)
|-+.-..
T Consensus 592 L~~~~~~ 598 (622)
T KOG0506|consen 592 LEEAQYP 598 (622)
T ss_pred HHHHhcc
Confidence 9876543
No 122
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.85 E-value=4e-05 Score=78.30 Aligned_cols=65 Identities=35% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcC-CCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 001972 640 VSPNFRDARGRTALHWASYFGREETVIMLVKLG-AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710 (988)
Q Consensus 640 advn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~G-Ad~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~ 710 (988)
.++|.+|..|||||+.||..|..+.|.+|+.+| +.+.+.+ ..|.+++.+|-..|+.+++..|-+.
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d------~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD------ESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc------cccchHHHHHHhcChHHHHHHHHHH
Confidence 344555555555555555555555555555555 3444433 3455555555555555555555443
No 123
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.83 E-value=1.3e-05 Score=99.47 Aligned_cols=99 Identities=29% Similarity=0.367 Sum_probs=86.4
Q ss_pred CCCCCCcc--CCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCC
Q 001972 605 GGKGPNVI--DDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 682 (988)
Q Consensus 605 ~Gad~n~~--D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~ 682 (988)
+|+.+|.. -..|.|+||.|+..|..-++++|+..|+++|.+|..|.||||.+...|+...+..|+++||++++.+
T Consensus 643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~--- 719 (785)
T KOG0521|consen 643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD--- 719 (785)
T ss_pred chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC---
Confidence 34444432 2468999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 001972 683 PAFPGGQTAADLASSRGHKGIAGYLAE 709 (988)
Q Consensus 683 ~~d~~G~TPLhlAa~~G~~eiv~~Lle 709 (988)
..|.+||++|....+.+++-+|.-
T Consensus 720 ---~~~~~~l~~a~~~~~~d~~~l~~l 743 (785)
T KOG0521|consen 720 ---PDGKLPLDIAMEAANADIVLLLRL 743 (785)
T ss_pred ---ccCcchhhHHhhhccccHHHHHhh
Confidence 799999999987777777665543
No 124
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.65 E-value=0.00015 Score=88.27 Aligned_cols=103 Identities=18% Similarity=0.067 Sum_probs=87.4
Q ss_pred CCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCC----ccCCCC
Q 001972 607 KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG----AVEDPT 682 (988)
Q Consensus 607 ad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n----~~dd~~ 682 (988)
.++|+.|.-|+++||+|..+.+.+++++|++++..+ .-+|.+|...|..++|++|+.+-.... ..+.+.
T Consensus 53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~ 125 (822)
T KOG3609|consen 53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS 125 (822)
T ss_pred cchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence 478999999999999999999999999999988776 248999999999999999998743321 233445
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCC
Q 001972 683 PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 716 (988)
Q Consensus 683 ~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~ 716 (988)
+....+.|||.+||..++.+|+++|+.+|++.+.
T Consensus 126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred ccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 5667889999999999999999999999977654
No 125
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.56 E-value=0.00012 Score=74.81 Aligned_cols=70 Identities=20% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCC-CCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCC
Q 001972 606 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATG-VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 675 (988)
Q Consensus 606 Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~G-advn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 675 (988)
+.++|.+|..|+|+|+.||..|..+.|.+|+.+| +.|...|..|.+++.+|-..|+.++|..|.+.-.+-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999 999999999999999999999999999999875443
No 126
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.54 E-value=0.00014 Score=80.83 Aligned_cols=61 Identities=30% Similarity=0.281 Sum_probs=55.4
Q ss_pred CcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCc
Q 001972 617 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGA 677 (988)
Q Consensus 617 ~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~ 677 (988)
..-|..||+.|..+.|+.|++.|++||.+|.....||.+|+.+||..+|++|+++||-...
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r 97 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR 97 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence 3468899999999999999999999999999999999999999999999999999986544
No 127
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.53 E-value=0.00011 Score=49.22 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 001972 848 NHIVKLQAHVRGHQVRKQY 866 (988)
Q Consensus 848 ~~~v~IQa~~Rg~~aRk~y 866 (988)
+++|+||++|||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555
No 128
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.45 E-value=0.00017 Score=83.16 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=80.5
Q ss_pred HHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCC--CCccCCCCCCCCCCCcHHHHHHHc
Q 001972 621 HLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA--PGAVEDPTPAFPGGQTAADLASSR 698 (988)
Q Consensus 621 H~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd--~n~~dd~~~~d~~G~TPLhlAa~~ 698 (988)
..|+..+..--+.-+-.+|.++-.++.+..|-||+|+..|+-++|++||++|.. .+..+ ..|.|+||-|+..
T Consensus 871 l~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~d------e~get~lhkaa~~ 944 (1004)
T KOG0782|consen 871 LRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD------ETGETALHKAACQ 944 (1004)
T ss_pred HHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh------hhhhHHHHHHHHh
Confidence 344555544334444557888989999999999999999999999999999864 23344 6999999999999
Q ss_pred CcHHHHHHHHHccCCCCCCCCccccCcchHHHHHHh
Q 001972 699 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 734 (988)
Q Consensus 699 G~~eiv~~Lle~Ga~~~~~~l~~~d~~~g~taa~~~ 734 (988)
++..+..+|++.| +.+.-.|.. |.+|.+.+
T Consensus 945 ~~r~vc~~lvdag-----asl~ktd~k-g~tp~era 974 (1004)
T KOG0782|consen 945 RNRAVCQLLVDAG-----ASLRKTDSK-GKTPQERA 974 (1004)
T ss_pred cchHHHHHHHhcc-----hhheecccC-CCChHHHH
Confidence 9999999999999 666666666 77776654
No 129
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.35 E-value=0.00078 Score=75.08 Aligned_cols=60 Identities=27% Similarity=0.210 Sum_probs=54.9
Q ss_pred cHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCC
Q 001972 651 TALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 716 (988)
Q Consensus 651 TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~ 716 (988)
--|..||+.|..+.|+.|++.|.++|.+| .....||.+|+..||.++|++|+++|+-...
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD------~fD~spL~lAsLcGHe~vvklLLenGAiC~r 97 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVD------RFDSSPLYLASLCGHEDVVKLLLENGAICSR 97 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhh------cccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence 45889999999999999999999999998 6889999999999999999999999965443
No 130
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.32 E-value=0.00026 Score=47.38 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 001972 824 HFAAIKIQQKYRGWKGRKDFL 844 (988)
Q Consensus 824 ~~AAi~IQ~~~Rg~~~Rk~f~ 844 (988)
+.||+.||+.||||++|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999985
No 131
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.79 E-value=0.093 Score=68.00 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001972 823 LHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 869 (988)
Q Consensus 823 ~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l 869 (988)
.+.|++.||+.+|.++.+++|..+.+.+|.+|..+|-..|++++..+
T Consensus 841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~ 887 (1463)
T COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQEL 887 (1463)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666555
No 132
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.67 E-value=0.053 Score=73.13 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=64.4
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhccCC-----CchhhHHHHHHH-hhhhhhcccchh---h-------------HHHHH
Q 001972 767 RKSAHAAALIQQAFRVRSFRHRQSIQSS-----DDVSEVSVDLVA-LGSLNKVSKMIH---F-------------EDYLH 824 (988)
Q Consensus 767 R~a~~AA~rIQ~aFR~~s~R~r~L~~~~-----~d~~e~~~sIla-~q~~~r~~~~~~---~-------------~~~~~ 824 (988)
...++|.+..+..|| .||..+.... .+....|..|+. +......+..+. | +..+.
T Consensus 697 cR~GfPnr~~~~eFr---qRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls 773 (1930)
T KOG0161|consen 697 CRQGFPNRMPFQEFR---QRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLS 773 (1930)
T ss_pred HHhhCccccchHHHH---HhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHH
Confidence 457899999999999 8988443311 222455555553 211101111111 1 23567
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHH
Q 001972 825 FAAIKIQQKYRGWKGRKDFLKIR---NHIVKLQAHVRGHQVRKQY 866 (988)
Q Consensus 825 ~AAi~IQ~~~Rg~~~Rk~f~~~r---~~~v~IQa~~Rg~~aRk~y 866 (988)
.--+.+|+.+|||++|+.|.+.+ .++.+||.-+|-|...|.+
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77889999999999999999775 4678899999998776644
No 133
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.51 E-value=0.0023 Score=80.04 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=75.2
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCH
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 662 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 662 (988)
-.++|.++..+. ..+.+.|++.|+++|.+|..|+||||.+...|+...+..|+++|++.++.|..|.+||++|....+.
T Consensus 657 ~s~lh~a~~~~~-~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~ 735 (785)
T KOG0521|consen 657 CSLLHVAVGTGD-SGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA 735 (785)
T ss_pred cchhhhhhccch-HHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence 356788887663 3456778899999999999999999999999999999999999999999999999999999877777
Q ss_pred HHHHHHHHc
Q 001972 663 ETVIMLVKL 671 (988)
Q Consensus 663 eiV~~LL~~ 671 (988)
+++-+|.-.
T Consensus 736 d~~~l~~l~ 744 (785)
T KOG0521|consen 736 DIVLLLRLA 744 (785)
T ss_pred cHHHHHhhh
Confidence 766655433
No 134
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.35 E-value=0.004 Score=43.90 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 001972 847 RNHIVKLQAHVRGHQVRKQYK 867 (988)
Q Consensus 847 r~~~v~IQa~~Rg~~aRk~y~ 867 (988)
.+++++||+.|||+++|++|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777777773
No 135
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=96.29 E-value=0.015 Score=54.75 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=65.1
Q ss_pred EEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCC-------cccceEEE----ecCeEEEecCC-C-----C
Q 001972 411 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE-------IEVPAEVL----TDNVIRCQAPS-H-----A 473 (988)
Q Consensus 411 ~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd-------~~Vpae~~----~~gvLrC~~Pp-h-----~ 473 (988)
.|..+|-.-++..||-+|.|+|.... +...-|.|++ .+.-+.+- ....|+|.+|| | .
T Consensus 2 ~I~r~s~~s~~~~GG~ev~Ll~~k~~------k~dikV~F~e~~~g~~~WE~~~~f~~~dv~q~aiv~~tP~y~~~~i~~ 75 (101)
T cd00602 2 PICRVSSLSGSVNGGDEVFLLCDKVN------KPDIKVWFGEKGPGETVWEAEAMFRQEDVRQVAIVFKTPPYHNKWITR 75 (101)
T ss_pred ceEEEeCCeeEcCCCcEEEEEecCCC------CCCCEEEEEecCCCCCeEEEEEEECHHHceEeEEEecCCCcCCCCccc
Confidence 58899999999999999999999431 2358899999 55555553 56679999999 2 5
Q ss_pred CceeEEEEEeCCCcccccceeeeee
Q 001972 474 AGRVPFYITGSNRLACSEVREFEYR 498 (988)
Q Consensus 474 pG~V~l~Vt~~n~~~~Sev~~FeYr 498 (988)
|=.|+|++.-.++..+|+...|+|.
T Consensus 76 pV~V~i~L~r~~~~~~S~~~~FtY~ 100 (101)
T cd00602 76 PVQVPIQLVRPDDRKRSEPLTFTYT 100 (101)
T ss_pred cEEEEEEEEeCCCCeecCCcCeEEc
Confidence 6677888877767778999999995
No 136
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.21 E-value=0.02 Score=68.63 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=69.3
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhcc-----CCCchhhHHHHHHHhhhhhhcccchhh---------------------
Q 001972 766 VRKSAHAAALIQQAFRVRSFRHRQSIQ-----SSDDVSEVSVDLVALGSLNKVSKMIHF--------------------- 819 (988)
Q Consensus 766 vR~a~~AA~rIQ~aFR~~s~R~r~L~~-----~~~d~~e~~~sIla~q~~~r~~~~~~~--------------------- 819 (988)
+|.|+.|-++.+..|. .||..|-. +..|+.++|..|+.- . .....+|
T Consensus 618 vRRAGfAYRr~F~kF~---qRyailsp~t~~twqGD~~~av~~il~~--~--~m~~~qyQmG~tkVFiKnPEsLF~LEem 690 (1106)
T KOG0162|consen 618 VRRAGFAYRRAFDKFA---QRYAILSPQTWPTWQGDEKQAVEHILRD--V--NMPSDQYQMGVTKVFIKNPESLFLLEEM 690 (1106)
T ss_pred ehhhhhHHHHHHHHHH---HHheecCcccccccccchHHHHHHHHHh--c--CCChhHhhccceeEEecChHHHHHHHHH
Confidence 4899999999999999 88877754 224557788888742 1 1111122
Q ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001972 820 -EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 869 (988)
Q Consensus 820 -~~~~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l 869 (988)
++..+.-|.+||++||.|.+||+|.++|..+.+| .-|.+.|++|--+
T Consensus 691 Rer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~Si~ 738 (1106)
T KOG0162|consen 691 RERKWDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRYSIN 738 (1106)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHH
Confidence 3356778999999999999999999999888765 3578888887433
No 137
>KOG3610 consensus Plexins (functional semaphorin receptors) [Signal transduction mechanisms]
Probab=96.21 E-value=0.012 Score=74.60 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=77.3
Q ss_pred cccCceEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCc-ccceEEEecCe-EEEecCCC-CCceeEEEE
Q 001972 405 SQEQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPAEVLTDNV-IRCQAPSH-AAGRVPFYI 481 (988)
Q Consensus 405 ~~~q~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~-~Vpae~~~~gv-LrC~~Pph-~pG~V~l~V 481 (988)
..-|.+.|.++.|.|||..|||.|+++|+.+.. .+...|++|+. +-+....+++. |+|..|+. .++.-++.|
T Consensus 138 ~s~~~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~-----gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~v 212 (1025)
T KOG3610|consen 138 SSLQGPCFLSAEPVNGPASGGTQVHCTGSPLDT-----GSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVLV 212 (1025)
T ss_pred eeecceeEEeeccCcCCCCCCcceEEecccccc-----CCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceEE
Confidence 345778999999999999999999999997755 46799999999 88888999996 99999997 568889999
Q ss_pred EeCCCcccccceeeeeecCCCC
Q 001972 482 TGSNRLACSEVREFEYREKPSK 503 (988)
Q Consensus 482 t~~n~~~~Sev~~FeYr~~~~~ 503 (988)
..+....-....-|+|...+.-
T Consensus 213 ~f~~~~~~~~~~~f~y~~dps~ 234 (1025)
T KOG3610|consen 213 SFDRTPQKLTPLAFNYTADPSY 234 (1025)
T ss_pred EecccccccCCCCcccccCCcc
Confidence 8877654333567888766543
No 138
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.13 E-value=0.0059 Score=43.04 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 001972 823 LHFAAIKIQQKYRGWKGRKDFL 844 (988)
Q Consensus 823 ~~~AAi~IQ~~~Rg~~~Rk~f~ 844 (988)
...||+.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4579999999999999999984
No 139
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.66 E-value=0.016 Score=39.18 Aligned_cols=27 Identities=44% Similarity=0.534 Sum_probs=15.7
Q ss_pred CCcHhhHHHhcCCHHHHHHHHHcCCCC
Q 001972 649 GRTALHWASYFGREETVIMLVKLGAAP 675 (988)
Q Consensus 649 G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 675 (988)
|.||||+|+..|+.++++.|+..|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 455666666666666666666555543
No 140
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=95.50 E-value=0.053 Score=50.88 Aligned_cols=81 Identities=26% Similarity=0.358 Sum_probs=59.4
Q ss_pred ceEEEeecCCCccCCCceEEEEEcc-cCCCCCCCCCCceEEeeCCc--------ccce----EEEecCeEEEecCC-C--
Q 001972 409 LFSIRDFSPDWAYSGAETKVLIIGM-FLGTKKLSSDTKWGCMFGEI--------EVPA----EVLTDNVIRCQAPS-H-- 472 (988)
Q Consensus 409 ~f~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~~~~~~c~FGd~--------~Vpa----e~~~~gvLrC~~Pp-h-- 472 (988)
++.|.+.|-.-++..||-||.++|. |..+ .-|.|-+. +.-| +.+...-|+|.+|| |
T Consensus 1 lp~I~r~s~~s~sv~GG~Ev~Ll~~k~~kD--------ikV~F~E~~~dG~~~WE~~a~f~~~~~hQ~aIvf~tPpY~~~ 72 (101)
T cd01178 1 LPEIEKKSLNSCSVNGGEELFLTGKNFLKD--------SKVVFQEKGQDGEAQWEAEATIDKEKSHQNHLVVEVPPYHNK 72 (101)
T ss_pred CCeeEEeccCceeecCCCEEEEEehhcCCC--------CEEEEEEeCCCCccceEEEEEeChHhceeeeEEEecCCCCCC
Confidence 4579999999999999999999999 5432 44555432 2222 33467899999999 2
Q ss_pred ---CCceeEEEEEeCCCcccccceeeeee
Q 001972 473 ---AAGRVPFYITGSNRLACSEVREFEYR 498 (988)
Q Consensus 473 ---~pG~V~l~Vt~~n~~~~Sev~~FeYr 498 (988)
.|=.|.|++..+. ..+|+...|+|.
T Consensus 73 ~I~~pV~V~~~l~~~~-~~~S~~~~FtY~ 100 (101)
T cd01178 73 HVAAPVQVQFYVVNGK-RKRSQPQTFTYT 100 (101)
T ss_pred CcCCceEEEEEEEcCC-CCcCCCCCcEec
Confidence 6667777776543 457999999995
No 141
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.38 E-value=0.027 Score=65.28 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred CcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHH
Q 001972 617 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 657 (988)
Q Consensus 617 ~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa 657 (988)
-|+||+|+..|...+|..||+.|+|+..+|..|.||..+++
T Consensus 431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 34455555555555554444444544444444555544443
No 142
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=95.09 E-value=0.085 Score=49.53 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=58.6
Q ss_pred EEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCc-------cc-----ceEEEecCeEEEecCC-C-----
Q 001972 411 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-------EV-----PAEVLTDNVIRCQAPS-H----- 472 (988)
Q Consensus 411 ~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~-------~V-----pae~~~~gvLrC~~Pp-h----- 472 (988)
.|.+++=.-|+..||.+|.+++.... +....|.|-+. +. |+.+....-|+|.+|| |
T Consensus 2 ~I~r~s~~sgsv~GG~Ev~LLcdKV~------K~dI~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~~~I~ 75 (102)
T cd01177 2 KICRLDKTSGSVKGGDEVYLLCDKVQ------KEDIQVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHDPDIT 75 (102)
T ss_pred EEEEecCcccccCCCcEEEEEecccC------CCCCEEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCCCcCC
Confidence 69999999999999999999998431 22355666543 11 2334455678999999 3
Q ss_pred CCceeEEEEEeCCCcccccceeeeee
Q 001972 473 AAGRVPFYITGSNRLACSEVREFEYR 498 (988)
Q Consensus 473 ~pG~V~l~Vt~~n~~~~Sev~~FeYr 498 (988)
.|=.|-+++.-.....+|+...|+|.
T Consensus 76 ~pV~V~iqL~Rpsd~~~Sep~~F~Y~ 101 (102)
T cd01177 76 EPVKVKIQLKRPSDGERSESVPFTYV 101 (102)
T ss_pred CceEEEEEEEeCCCCCccCCcceEEc
Confidence 45566666665555568999999995
No 143
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=94.92 E-value=0.036 Score=37.31 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHcCChhhhHHHHhCCCCCC
Q 001972 615 GGQGVVHLAAALGYEWAMRPIIATGVSPN 643 (988)
Q Consensus 615 ~G~TpLH~AA~~G~~~iV~~LL~~Gadvn 643 (988)
.|.||||+|+..|+.++++.|+..|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999998775
No 144
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.25 E-value=0.11 Score=64.00 Aligned_cols=117 Identities=20% Similarity=0.041 Sum_probs=89.6
Q ss_pred cHHHHHHHcCChhhhHHHHhC----CCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHH
Q 001972 618 GVVHLAAALGYEWAMRPIIAT----GVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAAD 693 (988)
Q Consensus 618 TpLH~AA~~G~~~iV~~LL~~----Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLh 693 (988)
--...||..|+...|+..++. ..++|.+|.-|+++|+.|..+.+.+++++|++++... .-+|-
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------------gdALL 93 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------------GDALL 93 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------------chHHH
Confidence 345678999999999887754 2678999999999999999999999999999875543 35899
Q ss_pred HHHHcCcHHHHHHHHHccCCCCCCCC----c----cccCcchHHHHHHhhHHHHHHHHHcCC
Q 001972 694 LASSRGHKGIAGYLAEADLSSHLSSL----T----VNENGMDNVAAALAAEKANETAAQIGV 747 (988)
Q Consensus 694 lAa~~G~~eiv~~Lle~Ga~~~~~~l----~----~~d~~~g~taa~~~~~~~v~~Lle~~a 747 (988)
+|+..|..++|++|+.+-....-... + ..|..+--.|++..+.++++.|+++++
T Consensus 94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence 99999999999999986432211111 0 111111237788888999999999997
No 145
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.11 E-value=0.06 Score=62.54 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=34.9
Q ss_pred hhhhHHHHhCCCCCCcc------CCCCCcHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHH
Q 001972 629 EWAMRPIIATGVSPNFR------DARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 696 (988)
Q Consensus 629 ~~iV~~LL~~Gadvn~~------D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa 696 (988)
...|+.|.+++++.|+. +..--|+||+|+..|..++|.+||+.|+||.+.| ..|.||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd------~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD------GAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc------cCCCCcccccc
Confidence 44556666665555442 2234466666666666666666666666655555 46666665554
No 146
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=93.73 E-value=0.32 Score=44.44 Aligned_cols=66 Identities=15% Similarity=0.305 Sum_probs=52.9
Q ss_pred eEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCC-----------CCceeEEEEEeCCCccccccee
Q 001972 426 TKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH-----------AAGRVPFYITGSNRLACSEVRE 494 (988)
Q Consensus 426 tkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph-----------~pG~V~l~Vt~~n~~~~Sev~~ 494 (988)
.-+-++|..| ..++.|-|||+++-+-+-.+-.|.|.+|+- .|..||+.+--.++..=+--..
T Consensus 20 amlEl~GenF-------~pnLkVWFG~veaeTmyR~~e~l~CvvPdis~f~~~w~~~~~p~~VPisLVR~DGvIY~T~lt 92 (97)
T cd01176 20 AMLELHGENF-------TPNLKVWFGDVEAETMYRCEESLLCVVPDISAFREEWRWVRQPVQVPISLVRNDGIIYPTGLT 92 (97)
T ss_pred EEEEEecCcC-------CCCceEEECCcceEEEEEccceeEEecCCHHHhccCceEecCceEeeEEEEecCCeEecCCce
Confidence 5677899955 346999999999999999999999999982 5678888887666666566677
Q ss_pred eeee
Q 001972 495 FEYR 498 (988)
Q Consensus 495 FeYr 498 (988)
|+|.
T Consensus 93 FtYt 96 (97)
T cd01176 93 FTYT 96 (97)
T ss_pred EEec
Confidence 8874
No 147
>PTZ00014 myosin-A; Provisional
Probab=93.41 E-value=0.18 Score=63.92 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001972 848 NHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGS 888 (988)
Q Consensus 848 ~~~v~IQa~~Rg~~aRk~y~~l~~sv~~lqk~~~rwr~~r~ 888 (988)
..+++||++|||+++|++|+++..++..+|+.+|+|..++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45779999999999999999999999999999999887653
No 148
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=93.13 E-value=2.6 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 001972 848 NHIVKLQAHVRGHQVRKQYKKVV 870 (988)
Q Consensus 848 ~~~v~IQa~~Rg~~aRk~y~~l~ 870 (988)
.+++++|+..|||++||+++...
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhchHH
Confidence 35677888888888888886663
No 149
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=92.76 E-value=1.1 Score=58.42 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=61.7
Q ss_pred HHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 001972 828 IKIQQKYRGWKGRKDFLKIR-------NHIVKLQAHVRGHQV----RKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVG 896 (988)
Q Consensus 828 i~IQ~~~Rg~~~Rk~f~~~r-------~~~v~IQa~~Rg~~a----Rk~y~~l~~sv~~lqk~~~rwr~~r~~lr~~~~~ 896 (988)
.+||...||+..|.+|...- -.++.||++|||++. ..........++..|+..|+...+.+..+
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~----- 613 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSR----- 613 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH-----
Confidence 44588888888877766443 246778888888874 11122236667777777776555444442
Q ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q 001972 897 NSTANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMV 950 (988)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~L~~~rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~ 950 (988)
+.|....-.++.+.+|+..|...+|..|+.+.
T Consensus 614 ----------------------~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 614 ----------------------KLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred ----------------------HHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 22222222466778888888888888888887
No 150
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=92.31 E-value=0.32 Score=59.07 Aligned_cols=103 Identities=22% Similarity=0.412 Sum_probs=64.7
Q ss_pred CChHHHHHHHHcccccc-----cCCCCCCCCCCCceee-ee--hHhhhhhhccCccceeccCCCchHHHhhhcccCCeee
Q 001972 27 LRPTEICEILRNYQKFH-----LTPDPPVRPPAGSLFL-FD--RKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDV 98 (988)
Q Consensus 27 ~~~~e~~~~l~~~~~~~-----~~~~~~~~p~~g~~~~-~~--~~~~~~~~~dg~~w~~~~~~~~~~e~h~~l~~~~~~~ 98 (988)
|..+++.++|.+-.+.- +.-.=-.+|+-|+||| |- -++.-.|-.|||.|.- -|.--+..|+|..+
T Consensus 30 l~~~~~~~~Ll~ap~i~r~~~P~~WtylD~P~DGtv~L~wqp~~~lg~~fasDGy~wad-------~E~~y~~~~~G~~l 102 (669)
T PF08549_consen 30 LPPETVVEYLLKAPQIARDTAPFFWTYLDKPPDGTVLLTWQPLNRLGTNFASDGYVWAD-------PEQAYTHEVNGYTL 102 (669)
T ss_pred CCHHHHHHHHHhchhhhccCCCeEeecccCCCCCcEEEEecCchhcCCcCCCCcceecC-------hhheeeecCCCeEE
Confidence 34455666665443221 1111236789999999 73 3456789999999974 14444455555432
Q ss_pred --E---EEEeeccccCccccceeeeeccCCc---------ccEEEEeeeccc
Q 001972 99 --L---HCYYAHGEDNENFQRRSYWMLDGQL---------EHIVLVHYREVK 136 (988)
Q Consensus 99 --~---~~~y~~~~~~~~f~rr~y~~~~~~~---------~~~vlvhy~~~~ 136 (988)
. ++|+-=+|..-..-||.|-|+-... ...+||||..-.
T Consensus 103 Ei~~~k~G~~p~~e~~a~h~RrRyRL~~~~~p~pn~P~~DpsLwiVHY~~a~ 154 (669)
T PF08549_consen 103 EIYEHKSGYHPPGEQYASHSRRRYRLVPGKVPNPNAPPPDPSLWIVHYGPAP 154 (669)
T ss_pred EEEEeecCcCCCCCchhheeeeeeEecCCCCCCCCCCCCCCcEEEEEecCCC
Confidence 1 2244436777789999999995432 468999998754
No 151
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.30 E-value=2.2 Score=58.34 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 001972 848 NHIVKLQAHVRGHQVRKQYKKV---VWSVSIVEKAILRWRRRG 887 (988)
Q Consensus 848 ~~~v~IQa~~Rg~~aRk~y~~l---~~sv~~lqk~~~rwr~~r 887 (988)
+-++.+||.+|||++|+.|+++ ..++.+||+.++.|...|
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567889999999999999887 778888999999885543
No 152
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=90.60 E-value=2.2 Score=55.78 Aligned_cols=50 Identities=30% Similarity=0.404 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHH
Q 001972 820 EDYLHFAAIKIQQKYRGWKGRKDFLKIR-------NHIVKLQAHVRGHQVRKQYKKV 869 (988)
Q Consensus 820 ~~~~~~AAi~IQ~~~Rg~~~Rk~f~~~r-------~~~v~IQa~~Rg~~aRk~y~~l 869 (988)
......-++.+|+..||+.+|+.|.... ..+|+||+.+|+.++|+.|+.+
T Consensus 588 ~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 588 LDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 3344556778888888888888776543 3577888888888888888777
No 153
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=89.42 E-value=0.043 Score=65.43 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=60.9
Q ss_pred EEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCC-CCceeEEEEEeCCCc--
Q 001972 411 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH-AAGRVPFYITGSNRL-- 487 (988)
Q Consensus 411 ~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph-~pG~V~l~Vt~~n~~-- 487 (988)
.|.|+.|-.+...||++|+..|..+.. .....++|..+...-+.||. .+|.|.|.|+...-.
T Consensus 244 vprd~~~~Q~~i~~~~~v~~~g~n~~~---------------~als~~~~~~s~~~~~l~~~d~~~~v~~~i~~~~~~~~ 308 (605)
T KOG3836|consen 244 VPRDMRRFQVLINGGVEVTLLGANFKD---------------IALSTQCSEESTMVNYLPPSDNPGSVSVSITDPSETSD 308 (605)
T ss_pred Cccccccccccccccceecccccchhh---------------hhhcccccccccceeeccccccCCCceeeecccccccc
Confidence 799999999999999999999995421 56678899999999999887 999999999842211
Q ss_pred ----------ccccceeeeeecCCCCC
Q 001972 488 ----------ACSEVREFEYREKPSKA 504 (988)
Q Consensus 488 ----------~~Sev~~FeYr~~~~~~ 504 (988)
..+-...|.|.+..+..
T Consensus 309 ~~~~~~~~~~~~~~~~i~~yvp~t~~q 335 (605)
T KOG3836|consen 309 SNNSNSSPPTSSSTKAIFTYVPSTDRQ 335 (605)
T ss_pred ccccccCCccCCCcccceeeecCCCce
Confidence 11333577777765543
No 154
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=87.74 E-value=1.6 Score=53.07 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=9.4
Q ss_pred CCcccHHHHHHHHHHh
Q 001972 10 NQQLDLEQILQEAQYR 25 (988)
Q Consensus 10 ~~~~d~~~~~~~~~~~ 25 (988)
+..++++++++--+.|
T Consensus 16 le~~~~~~f~~NLrlR 31 (1001)
T KOG0164|consen 16 LETVSEESFMENLRLR 31 (1001)
T ss_pred eccccHHHHHHHHHHH
Confidence 3455666666666555
No 155
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=86.18 E-value=10 Score=46.78 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001972 822 YLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKL 853 (988)
Q Consensus 822 ~~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~I 853 (988)
.+..+.+++|+..|||++||+|...-....++
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 36678899999999999999998765444443
No 156
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=82.11 E-value=0.95 Score=54.45 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=89.7
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCCCCceeEEEEEeCCCccc
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLAC 489 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph~pG~V~l~Vt~~n~~~~ 489 (988)
.-|..|+|.-+..-+|+.|.|+|-.+-+ ++.|.||++ |+.-.+.+|+..-..+...
T Consensus 323 ~~i~~yvp~t~~q~~~~al~ivg~n~~~-------~l~~a~~~~----------------~~s~~~~~~~~~~n~~~~s- 378 (605)
T KOG3836|consen 323 KAIFTYVPSTDRQLIEYALQIVGLNMNG-------KLEDARNIA----------------NSSLSPTSPMMNNNSEQLS- 378 (605)
T ss_pred ccceeeecCCCceeeeeEEEEecccccC-------chhhhcCCc----------------cccCCCCCcceeccccccC-
Confidence 5799999999999999999999995433 488999998 3333455565554444332
Q ss_pred ccceeeeeecCCCCCCCCccccCCCchHhHHHHHHHHhhccCCccccccccccchhhhhhHHHHhhhhCCCCCcchhhcc
Q 001972 490 SEVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLYLDPERKWFDCTIEDCNKCKLKNTIYSMRGDSEKDWGRVDE 569 (988)
Q Consensus 490 Sev~~FeYr~~~~~~~~~~~~~~~~~~e~~Lq~Rl~~LL~~~~~~~~~~~s~~~~~k~~l~~ki~~l~~~d~~~~~~l~e 569 (988)
+....|.+...... . . ++.+ +.+. +.+ ..|..+
T Consensus 379 ~~aI~~~~~~~~~s-~-~---------~lSl-----------------------~~~~------~~~-----~~~ss~-- 411 (605)
T KOG3836|consen 379 PYAIMSQKPTNNLS-T-V---------NLSL-----------------------CDVR------AAL-----NNSSSL-- 411 (605)
T ss_pred ccceeeecCCCCCC-c-c---------ceee-----------------------ehhh------hhh-----cCCccc--
Confidence 44455555443222 1 0 0000 0000 000 111111
Q ss_pred cccccccCCchhhhHHHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCC
Q 001972 570 SPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG 649 (988)
Q Consensus 570 ~l~~~~~~~~~~~~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G 649 (988)
+..++..|+.++..|..|.+|+|+++..|...+++.++....+++..-..|
T Consensus 412 -----------------------------v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~~~~~~ 462 (605)
T KOG3836|consen 412 -----------------------------VFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISLKSVNG 462 (605)
T ss_pred -----------------------------eeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhcccccc
Confidence 223445678888899999999999999999999999887766665554444
Q ss_pred Cc
Q 001972 650 RT 651 (988)
Q Consensus 650 ~T 651 (988)
.+
T Consensus 463 ~~ 464 (605)
T KOG3836|consen 463 MI 464 (605)
T ss_pred cc
Confidence 44
No 157
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.53 E-value=7.1 Score=35.07 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 919 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 919 rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
..++|++++.|+..|.-+. +..+.+.+-..+..+...++..-+.+..++..|+.+-..=++-|.+++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999998886 666666666666666666666666677777777777777777766654
No 158
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.06 E-value=7.5 Score=33.92 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 919 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 919 rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
..+++++++.|+..|+-+. ...++++.-..+..+...++...+.++.+++.|+++-..-++-|.++.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999988876 666776666666666666777777788888888888877777777765
No 159
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.82 E-value=23 Score=34.71 Aligned_cols=73 Identities=8% Similarity=0.033 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---Hhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 913 EFLRIGRKQKFAGVEKALERV---KSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 913 ~~L~~~rkq~e~~~~~a~~rV---qs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
..|...|..+.+.+-+..... ++.. +...++.++..+...+.-+-..+..-..++++|+.-|..+|+-.+.-|
T Consensus 40 ~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 40 ARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444443333 3333 566677777777777777777788888899999999999988777654
No 160
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.04 E-value=13 Score=40.28 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHHhhhhhhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcc
Q 001972 883 WRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDG 962 (988)
Q Consensus 883 wr~~r~~lr~~~~~~~~~~~~~~~~~~~~~~~L~~~rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~ 962 (988)
+...|.+|+.|+..-. +-+..|..++.|++.+.+.+..++|.| +-+..++++.++....+-.+
T Consensus 29 f~~~reEl~EFQegSr-----------E~EaelesqL~q~etrnrdl~t~nqrl------~~E~e~~Kek~e~q~~q~y~ 91 (333)
T KOG1853|consen 29 FLQMREELNEFQEGSR-----------EIEAELESQLDQLETRNRDLETRNQRL------TTEQERNKEKQEDQRVQFYQ 91 (333)
T ss_pred HHHHHHHHHHHhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3445677776665431 112455666777777777777777766 44455566555555555555
Q ss_pred cCcchHhHHhhhHhHHHHHHHhhh
Q 001972 963 SGLLSQGEDSLNGPTKDNLHAYVA 986 (988)
Q Consensus 963 ~~~~~~~L~~~l~~lk~~l~~~~~ 986 (988)
-.+...+--+++.+.|++++.|+.
T Consensus 92 q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777778888888764
No 161
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.65 E-value=3.2 Score=50.95 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001972 819 FEDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRG 859 (988)
Q Consensus 819 ~~~~~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~IQa~~Rg 859 (988)
|.+++.+||+.||+.+|||.+||+|. +.||.-|+.
T Consensus 25 ~qrrr~~aa~~iq~~lrsyl~Rkk~~------~~I~~e~d~ 59 (1096)
T KOG4427|consen 25 YQRRREAAALFIQRVLRSYLVRKKAQ------IEIQEEFDN 59 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 67789999999999999999999865 345554544
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.87 E-value=30 Score=43.73 Aligned_cols=32 Identities=13% Similarity=-0.069 Sum_probs=24.3
Q ss_pred hhhhhhcccCcchHhHHhhhHhHHHHHHHhhh
Q 001972 955 NFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 986 (988)
Q Consensus 955 ~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~~ 986 (988)
+||.+++-.+..+-.-..||..||.+|..++|
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677777777777777788888888877776
No 163
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.02 E-value=6.1 Score=43.47 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhh-hcHHHHHHHHHHHHH--------------HHhhhhhhcccCcchHhHHhhhHhHHHHHHHhhhc
Q 001972 923 FAGVEKALERVKSMV-RNPEARDQYMRMVAK--------------FENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVAD 987 (988)
Q Consensus 923 e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~e--------------l~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~~~ 987 (988)
+.++.++..+++... .+.++|-|+-||+++ |++|+.++..++-.++.+++.|...-.-|+.|..|
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvD 153 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVD 153 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhh
Confidence 334444444454444 555555666666532 24455555555555555555555555555555443
No 164
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=5.5 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 001972 822 YLHFAAIKIQQKYRGWKGRKDFLKI 846 (988)
Q Consensus 822 ~~~~AAi~IQ~~~Rg~~~Rk~f~~~ 846 (988)
+...+|+.||+.||||.+|++++..
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555444
No 165
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.82 E-value=15 Score=39.13 Aligned_cols=37 Identities=5% Similarity=-0.134 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhH
Q 001972 941 EARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 977 (988)
Q Consensus 941 ~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~l 977 (988)
..++.++++..+.-....++.++..++.+|+.....|
T Consensus 167 e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 167 EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 3333333333333333333333444444444444333
No 166
>KOG3610 consensus Plexins (functional semaphorin receptors) [Signal transduction mechanisms]
Probab=71.83 E-value=4.3 Score=52.45 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=53.8
Q ss_pred cCceEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCc--ccceEEEecCeEEEecCCCC--CceeEEEEE
Q 001972 407 EQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI--EVPAEVLTDNVIRCQAPSHA--AGRVPFYIT 482 (988)
Q Consensus 407 ~q~f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~--~Vpae~~~~gvLrC~~Pph~--pG~V~l~Vt 482 (988)
-+.|+|++|+|.-|+..|||.|+|.|..+..--..-.. -.++=|-- .++.++.--..+.|..-++. ||.|.+.|-
T Consensus 47 c~~P~i~~~~P~~g~~eggt~iti~g~nlg~~~~dv~~-~v~Va~v~c~~~~~~y~~~~~i~C~~~~~~~~~g~v~~~v~ 125 (1025)
T KOG3610|consen 47 CPLPSITALSPLNGPIEGGTNISIVGTNLGNSLNDVSD-GVKVAGVRCSPVAEEYDCSPCIACSPGANGSWPGPINVAVG 125 (1025)
T ss_pred cCCCcccceeeccccccCCceeeeeeeehhhhhhhccC-CceEeeeecCCCccccccccceeeccCCCCCCCCceeEEec
Confidence 45678999999999999999999999977442111111 11222222 55567777888999998885 799988887
No 167
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.19 E-value=93 Score=39.07 Aligned_cols=26 Identities=4% Similarity=-0.170 Sum_probs=13.7
Q ss_pred hcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 960 DDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 960 l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
.+...+++..|+++|.++++.|..++
T Consensus 481 ~e~~isei~qlqarikE~q~kl~~l~ 506 (1118)
T KOG1029|consen 481 RELMISEIDQLQARIKELQEKLQKLA 506 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344555555555555555555443
No 168
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.92 E-value=22 Score=31.72 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 919 RKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 919 rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
..+++.+++.|+.+|..+ +.+..+++++-...+.....+..++..|+.+-...++-|.++
T Consensus 6 l~~LE~ki~~aveti~~L------q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALL------QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888877776 444444444433333333334444444444444444444443
No 169
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.86 E-value=39 Score=40.95 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccHHHHHHHH
Q 001972 839 GRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIG 918 (988)
Q Consensus 839 ~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l~~sv~~lqk~~~rwr~~r~~lr~~~~~~~~~~~~~~~~~~~~~~~L~~~ 918 (988)
.|+.+..++..+.+.|+++-++..+++-.. +.+..+..-+. .++++.+.|+..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~--~~l~~l~~Eie-------------------------~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHME--KKLEMLKSEIE-------------------------EKEEEIEKLQKE 316 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHH-------------------------HHHHHHHHHHHH
Confidence 466777777788888988888887776421 11211111111 123333444433
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 919 RKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 919 rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
...+...+ +.|-. --.++++|..|.++.+..+++.+.+...|..++..++-+++++
T Consensus 317 ~d~Lk~~I-----e~Q~i-----S~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 317 NDELKKQI-----ELQGI-----SGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHH-----HhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33332222 22211 2235666766666666667777777777777777666666554
No 170
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=67.62 E-value=15 Score=39.62 Aligned_cols=118 Identities=10% Similarity=0.066 Sum_probs=75.4
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhhHHHHhCCCCCCccCC----CCCcHhhHHH
Q 001972 583 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDA----RGRTALHWAS 657 (988)
Q Consensus 583 ~~lL~~al~~~l~e~Lv~~Lle~Gad~n~~D~-~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~----~G~TpLH~Aa 657 (988)
+-.|+.|++....+.+-.++ .|+ +-.++|-+|...+..+++-+|+.. .+....|. .+.--+-++.
T Consensus 154 ~isledAV~AsN~~~i~~~V---------tdKkdA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~L 223 (284)
T PF06128_consen 154 DISLEDAVKASNYEEISNLV---------TDKKDAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLL 223 (284)
T ss_pred cccHHHHHhhcCHHHHHHHh---------cchHHHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHH
Confidence 44466666665555553321 222 235788888888888888888853 11111111 1222344443
Q ss_pred h--cCCHHHHHHHHHcC-CCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCC
Q 001972 658 Y--FGREETVIMLVKLG-AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 713 (988)
Q Consensus 658 ~--~G~~eiV~~LL~~G-Ad~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~ 713 (988)
. .....+++..|..| +++|..= .+-..|.|-|+-|...+..+++.+|+++|+.
T Consensus 224 S~h~a~~kvL~~Fi~~Glv~vN~~F---~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 224 SEHSASYKVLEYFINRGLVDVNKKF---QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred hhcCCcHHHHHHHHhccccccchhh---hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 3 34677889999988 4565431 1225899999999999999999999999953
No 171
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.97 E-value=1.3e+02 Score=37.99 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001972 911 EYEFLRIGRKQKFAGVEKA 929 (988)
Q Consensus 911 ~~~~L~~~rkq~e~~~~~a 929 (988)
+.+.|...++++..+++..
T Consensus 445 eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 3445555555555555443
No 172
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.94 E-value=6 Score=31.94 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHH
Q 001972 942 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 942 AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
..++|..++..+...+..-+.+..+++.|+.||..|+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666666666666666677788888888888888765
No 173
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.50 E-value=1.2e+02 Score=38.62 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHH
Q 001972 819 FEDYLHFAAIKIQQKYRGWKGRKD 842 (988)
Q Consensus 819 ~~~~~~~AAi~IQ~~~Rg~~~Rk~ 842 (988)
|-.+.+.|...||++.+--+.-++
T Consensus 552 Yi~~~~~ar~ei~~rv~~Lk~~~e 575 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLLKQQKE 575 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677888888888776665444
No 174
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=63.36 E-value=20 Score=40.31 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhh--hcHHHHHHHHHHHHHH------Hhhhhh-hcccCcchHhH-HhhhHhHHHHHHHhhhc
Q 001972 922 KFAGVEKALERVKSMV--RNPEARDQYMRMVAKF------ENFKMC-DDGSGLLSQGE-DSLNGPTKDNLHAYVAD 987 (988)
Q Consensus 922 ~e~~~~~a~~rVqs~~--r~~~AR~qyrrl~~el------~~ak~~-l~~~~~~~~~L-~~~l~~lk~~l~~~~~~ 987 (988)
...++..+...+++.. |.-.+..|+.+.++|. ++.|++ |..+...-..| ..||.+|+.+|+-||.+
T Consensus 183 S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~ 258 (302)
T PF07139_consen 183 SIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSE 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Confidence 3344555555666554 6777777777777442 344444 33333322333 35799999999999986
No 175
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.68 E-value=19 Score=44.68 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=22.0
Q ss_pred HHHHHH-HHHHHHHHHHHhHHHHHHHHHH
Q 001972 842 DFLKIR-NHIVKLQAHVRGHQVRKQYKKV 869 (988)
Q Consensus 842 ~f~~~r-~~~v~IQa~~Rg~~aRk~y~~l 869 (988)
.|++.| ++++.||++||||.+||+|..-
T Consensus 24 ~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~ 52 (1096)
T KOG4427|consen 24 SYQRRREAAALFIQRVLRSYLVRKKAQIE 52 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 5789999999999999999654
No 176
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.35 E-value=1.5e+02 Score=38.52 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHH
Q 001972 920 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 983 (988)
Q Consensus 920 kq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~ 983 (988)
+.++..++.+..++++-. +....+.+|.++..+.++.+.++..++.....+..++..++.++-+
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~ 854 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN 854 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666 6777888888888776665555555554444444444444444443
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.60 E-value=2.7e+02 Score=32.51 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcc------cCcchHhHHhhhHhHHHHHHH
Q 001972 911 EYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDG------SGLLSQGEDSLNGPTKDNLHA 983 (988)
Q Consensus 911 ~~~~L~~~rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~------~~~~~~~L~~~l~~lk~~l~~ 983 (988)
+|...+..+.+.+.+++.+-..|..+. +++.++.+++++.|.+++. +.+-+...|+-|..||.+|+.
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t------~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERT------RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 355555555666666666666666664 4445555555555544433 334555677777777777754
No 178
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.47 E-value=92 Score=40.68 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=24.0
Q ss_pred HHHHHHH-HHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 940 PEARDQY-MRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 940 ~~AR~qy-rrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
..++++. +.+..++.+...+++.++.+++.+..++.+|+++++-+
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 33333444455556666666666666666666666544
No 179
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=60.37 E-value=35 Score=34.36 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=57.6
Q ss_pred ecCCCccCCCceEEEEEcc-cCCCCCCCCCCceEEeeCCc-----ccceEEEecCeEEEecCCC---CCceeEEEEEeCC
Q 001972 415 FSPDWAYSGAETKVLIIGM-FLGTKKLSSDTKWGCMFGEI-----EVPAEVLTDNVIRCQAPSH---AAGRVPFYITGSN 485 (988)
Q Consensus 415 ~sP~w~~~~ggtkVlI~G~-f~~~~~~~~~~~~~c~FGd~-----~Vpae~~~~gvLrC~~Pph---~pG~V~l~Vt~~n 485 (988)
+-|.-=.++.. ||.|+-. -+.. .....|.|-.. .+++.+|-+-|+++-+|.. -+|.|.+.|.|+|
T Consensus 3 V~P~rI~cg~~-~vfIiL~~~l~~-----~~~~eVef~~~n~~~~~~~~~~~N~yt~~~~aPd~~~~pag~V~v~v~~~g 76 (142)
T PF14545_consen 3 VQPSRIRCGQP-EVFIILRDPLDE-----EDTVEVEFESNNKPIRRVPAKWENPYTLQFKAPDFCLEPAGSVNVRVYCDG 76 (142)
T ss_pred ecCceeecCCC-EEEEEEeCCCCC-----CCeEEEEEEeCCCeeEeccceEECCEEEEEECchhcCCCCceEEEEEEECC
Confidence 45666677778 8888877 3321 34577777543 4889999999999999999 9999999999998
Q ss_pred Ccccccceeeeeec
Q 001972 486 RLACSEVREFEYRE 499 (988)
Q Consensus 486 ~~~~Sev~~FeYr~ 499 (988)
-..|. +...|..
T Consensus 77 ~~~~~--~~ikyys 88 (142)
T PF14545_consen 77 VSLGT--RQIKYYS 88 (142)
T ss_pred EEEEE--EeEEEEe
Confidence 66643 4556653
No 180
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=60.31 E-value=40 Score=39.91 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001972 821 DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEK 878 (988)
Q Consensus 821 ~~~~~AAi~IQ~~~Rg~~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l~~sv~~lqk 878 (988)
+..++||..+|..|.-||..|-+.+.- ....|+.+++.+.|+..+++
T Consensus 361 ~~KnAAA~VLqeTW~i~K~trl~~k~~-----------~~rlR~hQRkfL~AI~~fR~ 407 (489)
T KOG3684|consen 361 EHKNAAANVLQETWLIYKHTKLVSKGD-----------QARLRKHQRKFLQAIHQFRS 407 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc-----------hHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999988773322 24456777788888776533
No 181
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.45 E-value=50 Score=35.69 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=19.1
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHH
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 981 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l 981 (988)
..+.+-++-++++.|-+..+...+.+-.++.+|.++|+.++++|
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444444443333333333334444455555555444443
No 182
>PRK09039 hypothetical protein; Validated
Probab=58.03 E-value=2.9e+02 Score=32.02 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhH
Q 001972 916 RIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 977 (988)
Q Consensus 916 ~~~rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~l 977 (988)
...+...+..+.++--.|+.+- +...+|+|..++..++..++......+..+.+|..+|..+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343444444444444443 4444555555555555444444444444444444444333
No 183
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.64 E-value=47 Score=38.67 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHH
Q 001972 939 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 939 ~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
+..+++++...+++++++.........+..++..+|...|.+++
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555566666666666554
No 184
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=57.01 E-value=3.5e+02 Score=36.78 Aligned_cols=43 Identities=5% Similarity=-0.138 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHH
Q 001972 939 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 981 (988)
Q Consensus 939 ~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l 981 (988)
...++.++..++.+..++...+...+.+..+++.++.++..+|
T Consensus 492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444455555555555555444
No 185
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.79 E-value=2.8e+02 Score=31.79 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001972 869 VVWSVSIVEKAILRWRRR 886 (988)
Q Consensus 869 l~~sv~~lqk~~~rwr~~ 886 (988)
+......+..++-.-+.+
T Consensus 168 L~~~~~~l~~~~~~l~~~ 185 (325)
T PF08317_consen 168 LDKQLEQLDELLPKLRER 185 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333343434333333
No 186
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.30 E-value=2.4e+02 Score=32.27 Aligned_cols=45 Identities=7% Similarity=-0.109 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 940 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 940 ~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
..+|.++..+..++..-|..+..++.+...++..+..+++++..+
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
No 187
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=55.85 E-value=13 Score=28.39 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 001972 825 FAAIKIQQKYRGWKGRKD 842 (988)
Q Consensus 825 ~AAi~IQ~~~Rg~~~Rk~ 842 (988)
-||..||-.||.|+.||.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 489999999999999886
No 188
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.66 E-value=5.7e+02 Score=34.13 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=11.8
Q ss_pred eeCCc---ccceEEEecCeEEEec
Q 001972 449 MFGEI---EVPAEVLTDNVIRCQA 469 (988)
Q Consensus 449 ~FGd~---~Vpae~~~~gvLrC~~ 469 (988)
-||.. +--.-+|.+-...|.+
T Consensus 1091 GfGGR~C~qCqel~WGdP~~~C~a 1114 (1758)
T KOG0994|consen 1091 GFGGRTCSQCQELYWGDPNEKCRA 1114 (1758)
T ss_pred CCCCcchhHHHHhhcCCCCCCcee
Confidence 37776 3334467766555543
No 189
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.96 E-value=1.3e+02 Score=34.26 Aligned_cols=42 Identities=7% Similarity=-0.092 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHH
Q 001972 941 EARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 941 ~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
.+|.+++....++...+.+++..+.+..+++..|...++++.
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 190
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=53.90 E-value=19 Score=38.87 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=39.6
Q ss_pred ChhhhHHHHhCC-CCCCc---cCCCCCcHhhHHHhcCCHHHHHHHHHcCCCC
Q 001972 628 YEWAMRPIIATG-VSPNF---RDARGRTALHWASYFGREETVIMLVKLGAAP 675 (988)
Q Consensus 628 ~~~iV~~LL~~G-advn~---~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 675 (988)
...+++..|..| ++||. +-..|.|-|--|..++..+++.+||++||-.
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 456778888887 66775 3456999999999999999999999999843
No 191
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=52.78 E-value=51 Score=29.23 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhh--hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 922 KFAGVEKALERVKSMV--RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 922 ~e~~~~~a~~rVqs~~--r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
+|.++..|..-+|.-+ +...-...|..+...+..++.....+...+..|..+|..|-++++++
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666555 55555666777777777777777778888888888888888888765
No 192
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.58 E-value=56 Score=35.87 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=10.4
Q ss_pred cCcchHhHHhhhHhHHHHHHHhhh
Q 001972 963 SGLLSQGEDSLNGPTKDNLHAYVA 986 (988)
Q Consensus 963 ~~~~~~~L~~~l~~lk~~l~~~~~ 986 (988)
.+....+|.-.+..+-+.|+.||+
T Consensus 96 ~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 96 IEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444455555544
No 193
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.24 E-value=50 Score=35.42 Aligned_cols=33 Identities=3% Similarity=-0.128 Sum_probs=16.9
Q ss_pred HHHHHHhhhhhhcccCcchHhHHhhhHhHHHHH
Q 001972 949 MVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 981 (988)
Q Consensus 949 l~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l 981 (988)
++.+.++.+.++..+++++..|+.++..+++++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555566666666665544
No 194
>PRK11637 AmiB activator; Provisional
Probab=48.93 E-value=55 Score=38.89 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=34.6
Q ss_pred HHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 929 ALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 929 a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
....+.... +...+.+++..+..++.+.+.+++.++.++.+++.+|..+++++...+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 444455556666666666666677777777777777777777766554
No 195
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=48.91 E-value=3e+02 Score=36.24 Aligned_cols=59 Identities=8% Similarity=0.003 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhhh
Q 001972 926 VEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 986 (988)
Q Consensus 926 ~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~~ 986 (988)
+.+.+.+++. ....++.++...+.++..-+.+.+..+..+.+|+..+.--.++|+++-+
T Consensus 406 L~~evek~e~--~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 406 LKKEVEKLEE--QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444 5566677777777777666666777777788888777777777776644
No 196
>PRK11637 AmiB activator; Provisional
Probab=48.03 E-value=59 Score=38.60 Aligned_cols=27 Identities=0% Similarity=-0.206 Sum_probs=10.5
Q ss_pred hhhhhhcccCcchHhHHhhhHhHHHHH
Q 001972 955 NFKMCDDGSGLLSQGEDSLNGPTKDNL 981 (988)
Q Consensus 955 ~ak~~l~~~~~~~~~L~~~l~~lk~~l 981 (988)
..+.++...+.++..++.+|..+++++
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444443333333
No 197
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.98 E-value=60 Score=34.81 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=11.2
Q ss_pred hhcccCcchHhHHhhhHhHHHHHH
Q 001972 959 CDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 959 ~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
....+++++.+|+.||..++.++.
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555544444443
No 198
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.59 E-value=1.6e+02 Score=31.88 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhh
Q 001972 910 DEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMC 959 (988)
Q Consensus 910 ~~~~~L~~~rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~ 959 (988)
++-+-|++..+..+..++.+...+.++. +.....++|.|++++..+-+.+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666 5666667777777665544433
No 199
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=46.00 E-value=9e+02 Score=32.49 Aligned_cols=31 Identities=6% Similarity=-0.040 Sum_probs=20.2
Q ss_pred HhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 954 ENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 954 ~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
......|+....++..|..+|.++-..|+.-
T Consensus 1720 ~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1720 LRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 3444556666777777777777776666543
No 200
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=45.70 E-value=3.4e+02 Score=36.08 Aligned_cols=10 Identities=0% Similarity=-0.449 Sum_probs=3.6
Q ss_pred chHhHHhhhH
Q 001972 966 LSQGEDSLNG 975 (988)
Q Consensus 966 ~~~~L~~~l~ 975 (988)
+...+..++.
T Consensus 923 ~~~~~~~~~~ 932 (1179)
T TIGR02168 923 KLAQLELRLE 932 (1179)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 201
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=45.66 E-value=33 Score=40.16 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 001972 822 YLHFAAIKIQQKYRGWKGRKDFL 844 (988)
Q Consensus 822 ~~~~AAi~IQ~~~Rg~~~Rk~f~ 844 (988)
+-.+||+.||+.||+|.+|.+-+
T Consensus 15 raikaAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEAR 37 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999998743
No 202
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.37 E-value=1e+02 Score=30.47 Aligned_cols=7 Identities=43% Similarity=0.748 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001972 941 EARDQYM 947 (988)
Q Consensus 941 ~AR~qyr 947 (988)
.|...|.
T Consensus 42 ~Aq~~YE 48 (132)
T PF07926_consen 42 EAQQKYE 48 (132)
T ss_pred HHHHHHH
Confidence 3333333
No 203
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.29 E-value=6.3e+02 Score=32.85 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 910 DEYEFLRIGRKQKFAGVEKALERVKSMV-----RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 910 ~~~~~L~~~rkq~e~~~~~a~~rVqs~~-----r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
.-|.|.+ +.+...|+.++++|+..+- .+.++.+++.+.+.|+.+.+..-+.++.++..+.+.|..||||+.|-
T Consensus 366 ss~qfkq--lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 366 SSYQFKQ--LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred chHHHHH--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466666 6666689999999997653 45667777777777777766666667777777777777888877664
No 204
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=44.94 E-value=3.6e+02 Score=35.88 Aligned_cols=40 Identities=5% Similarity=-0.026 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHH
Q 001972 941 EARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 980 (988)
Q Consensus 941 ~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~ 980 (988)
.++.++.++..++.+.+..+...+.++..+..++..++.+
T Consensus 306 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 345 (1179)
T TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444333333333333333334444444333333
No 205
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.85 E-value=1.9e+02 Score=31.66 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001972 874 SIVEKAILRWRRRGSGL 890 (988)
Q Consensus 874 ~~lqk~~~rwr~~r~~l 890 (988)
...|+.+..|...+..+
T Consensus 38 ~~sQ~~id~~~~e~~~L 54 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQEL 54 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555544443
No 206
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.75 E-value=9.9e+02 Score=33.06 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhccc
Q 001972 875 IVEKAILRWRRRGSGLRGFRVGN 897 (988)
Q Consensus 875 ~lqk~~~rwr~~r~~lr~~~~~~ 897 (988)
.++.....|...+..++..-.++
T Consensus 815 ~l~~a~~~~~~a~~~l~~aaa~l 837 (1353)
T TIGR02680 815 KAAAAAAAWKQARRELERDAADL 837 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555555555444443
No 207
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.67 E-value=39 Score=29.17 Aligned_cols=43 Identities=5% Similarity=-0.008 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 942 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 942 AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
...++++.+.....++..|...+..+.+|..+|..|+++++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666677777778888888888888888888765
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.50 E-value=3.4e+02 Score=34.74 Aligned_cols=20 Identities=0% Similarity=-0.014 Sum_probs=8.2
Q ss_pred cchHhHHhhhHhHHHHHHHh
Q 001972 965 LLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 965 ~~~~~L~~~l~~lk~~l~~~ 984 (988)
++....++-|...=++|+.+
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~ 704 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDEL 704 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 209
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.38 E-value=1.5e+02 Score=30.89 Aligned_cols=22 Identities=9% Similarity=-0.209 Sum_probs=9.3
Q ss_pred hcccCcchHhHHhhhHhHHHHH
Q 001972 960 DDGSGLLSQGEDSLNGPTKDNL 981 (988)
Q Consensus 960 l~~~~~~~~~L~~~l~~lk~~l 981 (988)
..........+..++.++++-+
T Consensus 167 ~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 167 LERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.55 E-value=2e+02 Score=34.17 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=11.3
Q ss_pred CcchHhHHhhhHhHHHHHHHhh
Q 001972 964 GLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 964 ~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
+.++..+..++..|+|||..+|
T Consensus 427 ~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 3444445555555555555554
No 211
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.23 E-value=80 Score=27.90 Aligned_cols=60 Identities=5% Similarity=-0.108 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 920 KQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 920 kq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
..+..++..++.++.... ..++.+..+-..+-..+...-.++.+|+.++..|+.+|+.+-
T Consensus 8 ~~Lr~rLd~~~rk~~~~~------~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHE------IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555655555553 333444434333444444455667778888888887777653
No 212
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.03 E-value=65 Score=33.87 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHH-HHHHHhhh-hcHHHHHHHHHHH---HHHHhhhhhhcccCcchHhHHhhh
Q 001972 908 KTDEYEFLRIGRKQKFAGVEKA-LERVKSMV-RNPEARDQYMRMV---AKFENFKMCDDGSGLLSQGEDSLN 974 (988)
Q Consensus 908 ~~~~~~~L~~~rkq~e~~~~~a-~~rVqs~~-r~~~AR~qyrrl~---~el~~ak~~l~~~~~~~~~L~~~l 974 (988)
+-.+++.++..+.+...+++++ ..++..|+ ++...++.-+++. .|++..|....+++.+|.+|+...
T Consensus 7 ~~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 7 KVSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888777776 56677777 7777777666666 455666766777777777776553
No 213
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.92 E-value=4.1e+02 Score=33.86 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001972 912 YEFLRIGRKQKFAGVEKA 929 (988)
Q Consensus 912 ~~~L~~~rkq~e~~~~~a 929 (988)
-+.++..++++|.++.+.
T Consensus 540 ~e~~r~r~~~lE~E~~~l 557 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKL 557 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344554555555444333
No 214
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.15 E-value=37 Score=40.60 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=32.0
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
+..++.+++..++.++++......+++..+++|..++..|++|++|.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556667777766666555566666777777777888887777653
No 215
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.94 E-value=1.1e+02 Score=27.78 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 926 VEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 926 ~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
+++.-.|||.++ -+..++-+...++++-.....+.....+...+|..+...||++..+|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677888887 67777777777776655555556666777788999999999988776
No 216
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.77 E-value=44 Score=28.63 Aligned_cols=48 Identities=13% Similarity=0.010 Sum_probs=26.4
Q ss_pred hcHHHHHHHHHHH-HHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 938 RNPEARDQYMRMV-AKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 938 r~~~AR~qyrrl~-~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
+...|-+.||.-+ ..+.+.......++.++..|+.++..|+.++.++-
T Consensus 12 rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 12 RNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 33344555555666666666666666666666553
No 217
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.51 E-value=26 Score=44.46 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001972 838 KGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVS 874 (988)
Q Consensus 838 ~~Rk~f~~~r~~~v~IQa~~Rg~~aRk~y~~l~~sv~ 874 (988)
+.|.+-.+.-+.+|++|++|||+.+|++.+.+.+++-
T Consensus 20 ~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~f 56 (1001)
T KOG0942|consen 20 HKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEF 56 (1001)
T ss_pred HhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556789999999999999999988855543
No 218
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.37 E-value=4.1e+02 Score=36.09 Aligned_cols=58 Identities=9% Similarity=0.168 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhh-hcccCcchHhHHhhhHhHHHHHH
Q 001972 925 GVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMC-DDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 925 ~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~-l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
+++.....+..+. .......+|.+++.+++.+... ++..+.+..+++.+....+++..
T Consensus 360 ~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 419 (1201)
T PF12128_consen 360 ELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIE 419 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444 5555566666666555433222 33344445555555555444443
No 219
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.99 E-value=2.8e+02 Score=29.99 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 001972 824 HFAAIKIQQKYRGWKGRKD 842 (988)
Q Consensus 824 ~~AAi~IQ~~~Rg~~~Rk~ 842 (988)
..-|-++|...||...+-+
T Consensus 72 ReLA~kf~eeLrg~VGhiE 90 (290)
T COG4026 72 RELAEKFFEELRGMVGHIE 90 (290)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 3457888888998887665
No 220
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.84 E-value=2.6e+02 Score=29.71 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=44.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHH----HHHHhhhhhhcccCcchHhHHhhhHh
Q 001972 908 KTDEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMV----AKFENFKMCDDGSGLLSQGEDSLNGP 976 (988)
Q Consensus 908 ~~~~~~~L~~~rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~----~el~~ak~~l~~~~~~~~~L~~~l~~ 976 (988)
+..+++.|......++.+++.+-.+|+.+- +...+-..|++.. ....+++.....+..++..|++.|..
T Consensus 116 nL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 116 NLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688888888888899999999999987 4445555555554 22234444444455555555554443
No 221
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.53 E-value=1e+03 Score=32.91 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 001972 822 YLHFAAIKIQQKYRGWKGRKDFL 844 (988)
Q Consensus 822 ~~~~AAi~IQ~~~Rg~~~Rk~f~ 844 (988)
....++-.|...|+.|.......
T Consensus 244 ~~~~~l~~i~~~y~~y~~~~~~~ 266 (1353)
T TIGR02680 244 ALERALRNFLQRYRRYARTMLRR 266 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887744433
No 222
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=39.22 E-value=38 Score=35.55 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHhhhH---HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhh----HHHHhCCCCCCccCCC--CCc
Q 001972 581 SRDKLIQNLLRNRLC---EWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAM----RPIIATGVSPNFRDAR--GRT 651 (988)
Q Consensus 581 ~~~~lL~~al~~~l~---e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iV----~~LL~~Gadvn~~D~~--G~T 651 (988)
....+++.||++.-. .|+ |-++... +-.+.+-.|.......+. .+++....+-...|.. -.-
T Consensus 75 ~~q~LFElAC~~qkydiV~WI-------~qnL~i~--~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~ 145 (192)
T PF03158_consen 75 LNQELFELACEEQKYDIVKWI-------GQNLHIY--NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQ 145 (192)
T ss_pred HHHHHHHHHHHHccccHHHHH-------hhccCCC--CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHH
Confidence 445678888876543 444 2233222 223456666666666543 2344443222111111 113
Q ss_pred HhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 001972 652 ALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 709 (988)
Q Consensus 652 pLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle 709 (988)
-|.+|+..|-...|--.+++|.+++. ++|..|+..+|..|..+++.
T Consensus 146 hl~~a~~kgll~F~letlkygg~~~~------------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 146 HLEKAAAKGLLPFVLETLKYGGNVDI------------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccH------------HHHHHHHHhhHHHHHHHhhc
Confidence 46788889999888888889888765 56888888888888888763
No 223
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.12 E-value=3.7e+02 Score=33.61 Aligned_cols=30 Identities=7% Similarity=-0.203 Sum_probs=25.6
Q ss_pred HhhhhhhcccCcchHhHHhhhHhHHHHHHH
Q 001972 954 ENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 983 (988)
Q Consensus 954 ~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~ 983 (988)
++.|.++.+.-.....|+.+|..+..+|++
T Consensus 501 ~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 501 RKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667788888888888999999999988876
No 224
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.33 E-value=1.3e+03 Score=32.43 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001972 837 WKGRKDFLKIRNHIVKLQAHV 857 (988)
Q Consensus 837 ~~~Rk~f~~~r~~~v~IQa~~ 857 (988)
..+++.+.........|...+
T Consensus 296 ~eA~kkLe~tE~nL~rI~diL 316 (1486)
T PRK04863 296 YTSRRQLAAEQYRLVEMAREL 316 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444555554444
No 225
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=37.78 E-value=51 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 001972 849 HIVKLQAHVRGHQVRKQYKKVVW 871 (988)
Q Consensus 849 ~~v~IQa~~Rg~~aRk~y~~l~~ 871 (988)
-|.+||..||.+.+||+|.++..
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~re 720 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMRE 720 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999988833
No 226
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.58 E-value=1.2e+02 Score=26.85 Aligned_cols=19 Identities=0% Similarity=-0.191 Sum_probs=9.2
Q ss_pred hcccCcchHhHHhhhHhHH
Q 001972 960 DDGSGLLSQGEDSLNGPTK 978 (988)
Q Consensus 960 l~~~~~~~~~L~~~l~~lk 978 (988)
..+++.+++.|+.+|..++
T Consensus 49 ~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 49 NNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444445555555554443
No 227
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=37.41 E-value=1.4e+02 Score=27.25 Aligned_cols=64 Identities=25% Similarity=0.225 Sum_probs=41.0
Q ss_pred eEEEeecCCCccCCCceEEEEEcccCCCCCCCCCCceEEeeCCc-ccce-EEEecCeEE--EecCCC-CCceeEEEEE
Q 001972 410 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPA-EVLTDNVIR--CQAPSH-AAGRVPFYIT 482 (988)
Q Consensus 410 f~I~d~sP~w~~~~ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~-~Vpa-e~~~~gvLr--C~~Pph-~pG~V~l~Vt 482 (988)
+.|.-++|.---..++++|+|.|..|.+. ++||.= +|.. .-.+++-++ -.++.- .||.+++.|.
T Consensus 2 p~i~aV~P~~lkaG~~t~vti~Gt~L~~~---------v~l~~Gv~v~~v~~~s~~~v~v~V~~aa~a~~G~~~v~vg 70 (81)
T PF09099_consen 2 PTILAVSPAGLKAGEETTVTIVGTGLAGT---------VDLGPGVEVLKVVSASPDEVVVRVKAAADAAPGIRTVRVG 70 (81)
T ss_dssp SEEEEEESSEEETTCEEEEEEEEES-TT----------EE--TTEEEEEEEEE-STCEEEEEEEECTSSSEEEEEEET
T ss_pred CeEEEECchhccCCCeEEEEEEecCcccc---------eecCCCeEEEEEEEeCCCEEEEEEEEcCCCCCccEEEEec
Confidence 37999999999999999999999987442 677754 4443 224555333 355544 6677776654
No 228
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=37.38 E-value=1.9e+02 Score=32.98 Aligned_cols=25 Identities=8% Similarity=-0.158 Sum_probs=12.5
Q ss_pred hcccCcchHhHHhhhHhHHHHHHHh
Q 001972 960 DDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 960 l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
+.+.+.-+..|.+.+..|--++.++
T Consensus 196 l~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 196 LDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554444
No 229
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.77 E-value=2.4e+02 Score=29.64 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 001972 872 SVSIVEKAILRWRRRGSGLRGFR 894 (988)
Q Consensus 872 sv~~lqk~~~rwr~~r~~lr~~~ 894 (988)
-|..||.-+..|+.+...+...-
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778787777665443
No 230
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.73 E-value=1.3e+02 Score=32.81 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=12.7
Q ss_pred HhhhhhhcccCcchHhHHhhhHhHHHHHH
Q 001972 954 ENFKMCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 954 ~~ak~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
.+++.+.++....+..+..++..||+++.
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 231
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.55 E-value=1.3e+02 Score=36.49 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=34.8
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhhhc
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVAD 987 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~~~ 987 (988)
+..++.-+..++..++++.|..+..-+.+...|+.++++.+.+++.+++.
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 44444444555555566677777777788888888888888888887764
No 232
>PRK09039 hypothetical protein; Validated
Probab=36.35 E-value=1.3e+02 Score=34.78 Aligned_cols=68 Identities=7% Similarity=0.007 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhhh
Q 001972 919 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 986 (988)
Q Consensus 919 rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~~ 986 (988)
..+.+.++......+...- +...+++|...++..+...++.++..+....+.+.++..|+.+|++.+|
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333 4555555555555555556666666666677777777777777777664
No 233
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.08 E-value=6.3e+02 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.028 Sum_probs=7.2
Q ss_pred ccHHHHHHHHHHHHHHH
Q 001972 909 TDEYEFLRIGRKQKFAG 925 (988)
Q Consensus 909 ~~~~~~L~~~rkq~e~~ 925 (988)
..++..|......++.+
T Consensus 88 ~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 88 ERELRALNIEIQIAKER 104 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444454444443333
No 234
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.95 E-value=9.3e+02 Score=29.78 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=5.0
Q ss_pred ceEEeeCCc
Q 001972 445 KWGCMFGEI 453 (988)
Q Consensus 445 ~~~c~FGd~ 453 (988)
.+.|+|-+|
T Consensus 4 ~~~ViF~nV 12 (546)
T PF07888_consen 4 QSQVIFNNV 12 (546)
T ss_pred CCeEEEecc
Confidence 355666554
No 235
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=35.91 E-value=54 Score=38.51 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 001972 848 NHIVKLQAHVRGHQVRKQYKKV 869 (988)
Q Consensus 848 ~~~v~IQa~~Rg~~aRk~y~~l 869 (988)
++|+.||.++|+|.||.+.+..
T Consensus 18 kaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999988765
No 236
>KOG3743 consensus Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5) [Transcription]
Probab=35.28 E-value=51 Score=39.56 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=33.9
Q ss_pred CceEEEEEcccCCCCCCCCCCceEEeeCCcccceEEEecCeEEEecCCC
Q 001972 424 AETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH 472 (988)
Q Consensus 424 ggtkVlI~G~f~~~~~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph 472 (988)
.-+-+.+.|..+ ..++.+-|||+|++|-+-..-+|.|.+|+=
T Consensus 506 d~amlel~g~nf-------~p~l~vwfg~~e~et~~r~~~sl~c~Vp~v 547 (622)
T KOG3743|consen 506 DVAMLELHGQNF-------VPNLQVWFGDVEAETYYRSGESLQCVVPDV 547 (622)
T ss_pred ceeEEEecCCCC-------CCCceeeccccCchhhhcccceEEEEeCCh
Confidence 346677888844 224899999999999998888999999983
No 237
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=35.13 E-value=1.3e+02 Score=32.42 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=48.1
Q ss_pred CceEEEEEcccCCCC--------CCCCCCceEEeeCCcccceEEEecCeEEEecCCC-CCceeEEEEEeCCC
Q 001972 424 AETKVLIIGMFLGTK--------KLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH-AAGRVPFYITGSNR 486 (988)
Q Consensus 424 ggtkVlI~G~f~~~~--------~~~~~~~~~c~FGd~~Vpae~~~~gvLrC~~Pph-~pG~V~l~Vt~~n~ 486 (988)
-|.=|+|-|+++... -...-...+|.|+++..|--+++++=+.|.+|.- .+|.+.+.|...+.
T Consensus 4 PG~~vsIfG~~L~~~t~~~~~~plpt~l~Gv~V~vnG~~APl~yvSp~QIN~qvP~~~~~g~~~v~V~~~g~ 75 (215)
T TIGR03437 4 PGSIVSIFGTNLAPATLTAAGGPLPTSLGGVSVTVNGVAAPLLYVSPGQINAQVPYEVAPGAATVTVTYNGG 75 (215)
T ss_pred CCcEEEEEeccCCCccccccCCCCccccCCeEEEECCEEEEEEEeCcceEEEEeCCCcCCCcEEEEEEeCCc
Confidence 355677777766421 1112356789999999999999999999999987 68999999986554
No 238
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.13 E-value=1.1e+02 Score=30.34 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhH
Q 001972 912 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 977 (988)
Q Consensus 912 ~~~L~~~rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~l 977 (988)
++.|...|+++..|++.--.++..+. -...-+++.-.++.++...+.+++.....+..|...|.++
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888877777777665 3344444444444444444444555555555555555444
No 239
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=34.80 E-value=1.2e+02 Score=35.24 Aligned_cols=36 Identities=14% Similarity=-0.101 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHH
Q 001972 915 LRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMV 950 (988)
Q Consensus 915 L~~~rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~ 950 (988)
++...++++.++.++...++... +...|+++|.|.+
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~ 133 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQ 133 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44344555555555555554433 5666777776654
No 240
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=34.29 E-value=1e+03 Score=31.82 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=4.5
Q ss_pred HHHHHHHHcc
Q 001972 702 GIAGYLAEAD 711 (988)
Q Consensus 702 eiv~~Lle~G 711 (988)
++..+|...|
T Consensus 121 ~~~~~l~~~~ 130 (1164)
T TIGR02169 121 EIHDFLAAAG 130 (1164)
T ss_pred HHHHHHHHcC
Confidence 3444444444
No 241
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=33.88 E-value=17 Score=31.17 Aligned_cols=8 Identities=75% Similarity=1.514 Sum_probs=5.5
Q ss_pred ccCcccee
Q 001972 70 KDGHRWRK 77 (988)
Q Consensus 70 ~dg~~w~~ 77 (988)
.|||.|||
T Consensus 2 ~Dgy~WRK 9 (60)
T PF03106_consen 2 DDGYRWRK 9 (60)
T ss_dssp -SSS-EEE
T ss_pred CCCCchhh
Confidence 49999987
No 242
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=33.86 E-value=6.7e+02 Score=33.42 Aligned_cols=6 Identities=0% Similarity=-0.252 Sum_probs=2.1
Q ss_pred hhhHhH
Q 001972 972 SLNGPT 977 (988)
Q Consensus 972 ~~l~~l 977 (988)
.++..+
T Consensus 427 ~~~~~l 432 (1164)
T TIGR02169 427 AAIAGI 432 (1164)
T ss_pred HHHHHH
Confidence 333333
No 243
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=33.75 E-value=63 Score=38.81 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=10.6
Q ss_pred eEEEecCCC-CCceeEE
Q 001972 464 VIRCQAPSH-AAGRVPF 479 (988)
Q Consensus 464 vLrC~~Pph-~pG~V~l 479 (988)
+.+-+.|+| .||.-|+
T Consensus 214 t~~~~qpl~~~ps~~p~ 230 (655)
T KOG4343|consen 214 TVVQLQPLGVLPSAQPV 230 (655)
T ss_pred ceEEEecCCCCCCccch
Confidence 666677777 6666664
No 244
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.31 E-value=5e+02 Score=26.02 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=4.3
Q ss_pred hhHhHHHHH
Q 001972 973 LNGPTKDNL 981 (988)
Q Consensus 973 ~l~~lk~~l 981 (988)
|+..||+.|
T Consensus 141 E~~kLk~rL 149 (151)
T PF11559_consen 141 EIEKLKERL 149 (151)
T ss_pred HHHHHHHHh
Confidence 445555544
No 245
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.11 E-value=1.5e+02 Score=32.72 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=9.0
Q ss_pred cchHhHHhhhHhHHHHHHH
Q 001972 965 LLSQGEDSLNGPTKDNLHA 983 (988)
Q Consensus 965 ~~~~~L~~~l~~lk~~l~~ 983 (988)
....++..++...+++++.
T Consensus 119 ~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 119 EQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554443
No 246
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.06 E-value=54 Score=36.38 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHH
Q 001972 947 MRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 980 (988)
Q Consensus 947 rrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~ 980 (988)
|-|+..|++....+-+.++++.+||.||..++|+
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455566666666666777777777777666553
No 247
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=32.71 E-value=4e+02 Score=30.59 Aligned_cols=47 Identities=17% Similarity=-0.055 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHh-----hhhhhcccCcchHhHHhhhHhHHHHHHHhhh
Q 001972 940 PEARDQYMRMVAKFEN-----FKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 986 (988)
Q Consensus 940 ~~AR~qyrrl~~el~~-----ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~~ 986 (988)
..+|+++.++.++.-+ ++.+++..-..+.+|+.++.+|+.+|+.+-+
T Consensus 266 m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 266 MRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555555544322 6677777778888888888888888877644
No 248
>PF15556 Zwint: ZW10 interactor
Probab=32.56 E-value=6.5e+02 Score=26.95 Aligned_cols=29 Identities=10% Similarity=-0.112 Sum_probs=17.7
Q ss_pred hhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 956 FKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 956 ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
++.+++.+.-++..|+.+.+.-+++|+++
T Consensus 153 ~qqeLe~l~qeL~~lkqQa~qeqdKLQR~ 181 (252)
T PF15556_consen 153 TQQELERLYQELGTLKQQAGQEQDKLQRH 181 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666777777777777654
No 249
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.48 E-value=9.9e+02 Score=29.06 Aligned_cols=12 Identities=0% Similarity=-0.263 Sum_probs=4.9
Q ss_pred HhHHhhhHhHHH
Q 001972 968 QGEDSLNGPTKD 979 (988)
Q Consensus 968 ~~L~~~l~~lk~ 979 (988)
..|+.||..|++
T Consensus 168 ~~L~~qi~~L~~ 179 (475)
T PRK10361 168 HTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 250
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.79 E-value=2e+02 Score=30.64 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcHHHHHHHHHHHH----HHHh--------------hhhhhcccCcc
Q 001972 910 DEYEFLRIGRKQKFAGVEKALERVKSM-----VRNPEARDQYMRMVA----KFEN--------------FKMCDDGSGLL 966 (988)
Q Consensus 910 ~~~~~L~~~rkq~e~~~~~a~~rVqs~-----~r~~~AR~qyrrl~~----el~~--------------ak~~l~~~~~~ 966 (988)
-|.-.|+.++..++.++.++-...... ......|+||..|+. ++++ .+..++..+.+
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 344557777778877776665555541 133677888887772 3322 33445556667
Q ss_pred hHhHHhhhHhHHHHHHHh
Q 001972 967 SQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 967 ~~~L~~~l~~lk~~l~~~ 984 (988)
+..|..-|..-|++|+.+
T Consensus 176 V~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777777777777654
No 251
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.53 E-value=6.9e+02 Score=33.91 Aligned_cols=67 Identities=9% Similarity=-0.040 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHH
Q 001972 914 FLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 980 (988)
Q Consensus 914 ~L~~~rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~ 980 (988)
.++........+++.+..+|+..- +..+++.++..+..++...+..+...+.++..++.++..+..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 317 (1163)
T COG1196 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443 3333333333333333333333444444444444444444433
No 252
>PF12728 HTH_17: Helix-turn-helix domain
Probab=31.43 E-value=36 Score=27.43 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHcc-ccc--ccCCCCCCCCCCCceeeeehHhhhh
Q 001972 26 WLRPTEICEILRNY-QKF--HLTPDPPVRPPAGSLFLFDRKALRY 67 (988)
Q Consensus 26 w~~~~e~~~~l~~~-~~~--~~~~~~~~~p~~g~~~~~~~~~~~~ 67 (988)
||++.|+|++|.-- ..+ .+..........|.-++|++..|.-
T Consensus 1 ~lt~~e~a~~l~is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~ 45 (51)
T PF12728_consen 1 YLTVKEAAELLGISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDR 45 (51)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHH
Confidence 78999999999433 222 1322211111367779999988743
No 253
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=31.27 E-value=4.2e+02 Score=31.05 Aligned_cols=16 Identities=13% Similarity=-0.276 Sum_probs=6.9
Q ss_pred cCcchHhHHhhhHhHH
Q 001972 963 SGLLSQGEDSLNGPTK 978 (988)
Q Consensus 963 ~~~~~~~L~~~l~~lk 978 (988)
++.....|+.+.-.||
T Consensus 177 LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 177 LQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 254
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=31.23 E-value=62 Score=28.68 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=31.8
Q ss_pred cHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHHHHHHHc
Q 001972 618 GVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL 671 (988)
Q Consensus 618 TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~ 671 (988)
..|..|...|+.++++.+++.+ .++ ...|..|...-+.+++.+|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 3567777777777777777654 222 3457777777777777777764
No 255
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.93 E-value=6.2e+02 Score=26.21 Aligned_cols=43 Identities=2% Similarity=-0.084 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHH
Q 001972 939 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 981 (988)
Q Consensus 939 ~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l 981 (988)
.....++++.+..+.++.+........+...++.....+++.+
T Consensus 139 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 139 IKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443334444444444444444444444444443
No 256
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.82 E-value=1.6e+02 Score=30.27 Aligned_cols=47 Identities=4% Similarity=0.052 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 939 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 939 ~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
...++.+.++++.++.+.+.+.+.+++++..|..++...+++-++++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788788888888888888888888888888888887775
No 257
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=30.45 E-value=1.7e+02 Score=32.90 Aligned_cols=13 Identities=31% Similarity=-0.105 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 001972 914 FLRIGRKQKFAGV 926 (988)
Q Consensus 914 ~L~~~rkq~e~~~ 926 (988)
.|..-|.+++..+
T Consensus 170 ~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 170 ALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 3444444444333
No 258
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=30.26 E-value=80 Score=35.16 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.1
Q ss_pred eEEEecCC
Q 001972 464 VIRCQAPS 471 (988)
Q Consensus 464 vLrC~~Pp 471 (988)
+|-|-.|+
T Consensus 185 ~~~~~~pg 192 (348)
T KOG3584|consen 185 TIQLANPG 192 (348)
T ss_pred ccccCCCC
Confidence 33333333
No 259
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.80 E-value=4.9e+02 Score=25.02 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=17.0
Q ss_pred hhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 957 KMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 957 k~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
..++..+..++..|+.++..+.+.++.|
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666554
No 260
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.35 E-value=5.8e+02 Score=27.19 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 001972 913 EFLRIGRKQKFAGVEKALERVKSM 936 (988)
Q Consensus 913 ~~L~~~rkq~e~~~~~a~~rVqs~ 936 (988)
.-|....++.+..-+.-+++|+.+
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 261
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=1.3e+03 Score=29.49 Aligned_cols=46 Identities=4% Similarity=-0.135 Sum_probs=22.1
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHH
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 983 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~ 983 (988)
....+.+.|+.++.++.......-.+.+.+.-+...++.+.+++++
T Consensus 490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~ 535 (698)
T KOG0978|consen 490 ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERG 535 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666555433333333444444444444444444443
No 262
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=29.25 E-value=4.1e+02 Score=32.69 Aligned_cols=56 Identities=11% Similarity=-0.064 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcc-------cCcchHhHHhhhHhH
Q 001972 922 KFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDG-------SGLLSQGEDSLNGPT 977 (988)
Q Consensus 922 ~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~-------~~~~~~~L~~~l~~l 977 (988)
+++.+.-+..++..|. .-..++++--|+..++..++..+++ .++.+++|..+|.-+
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444555554 4555566666666666555555444 444555555554333
No 263
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.88 E-value=6e+02 Score=27.98 Aligned_cols=21 Identities=5% Similarity=-0.186 Sum_probs=8.6
Q ss_pred hcccCcchHhHHhhhHhHHHH
Q 001972 960 DDGSGLLSQGEDSLNGPTKDN 980 (988)
Q Consensus 960 l~~~~~~~~~L~~~l~~lk~~ 980 (988)
+...+.....+..++...+.+
T Consensus 128 ~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 128 LEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433
No 264
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=28.58 E-value=1.6e+02 Score=32.50 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 911 EYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 911 ~~~~L~~~rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
+.+.++..|+++..+..-...|...|.|..++.+ ....-|.....+.+++..|+.+++++|.++..-+
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEd-------kv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi 268 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRKRKLDRISRLED-------KVKTLKIYNRDLASELSKLKEQVAELKQKVMEHI 268 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566655555444445555544443333 3334444555577777778888888777765443
No 265
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.41 E-value=9.7e+02 Score=27.69 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=16.5
Q ss_pred hhhhhcccCcchHhHHhhhHhHHHHHHH
Q 001972 956 FKMCDDGSGLLSQGEDSLNGPTKDNLHA 983 (988)
Q Consensus 956 ak~~l~~~~~~~~~L~~~l~~lk~~l~~ 983 (988)
.+..+...+.++..++.++..++.++..
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556666666666666666654
No 266
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=28.18 E-value=19 Score=34.31 Aligned_cols=73 Identities=22% Similarity=0.373 Sum_probs=0.0
Q ss_pred EEEeecCCCccCCCceEEEEEcc-cCCCCCCCCCCceEEee--CC--c--ccceEEEecCeEEEecCC-CCCcee-EEEE
Q 001972 411 SIRDFSPDWAYSGAETKVLIIGM-FLGTKKLSSDTKWGCMF--GE--I--EVPAEVLTDNVIRCQAPS-HAAGRV-PFYI 481 (988)
Q Consensus 411 ~I~d~sP~w~~~~ggtkVlI~G~-f~~~~~~~~~~~~~c~F--Gd--~--~Vpae~~~~gvLrC~~Pp-h~pG~V-~l~V 481 (988)
+|..+-|+---.++.-.|.|.|. |.... ......|-| .+ . +=|+ .++++.|.|-+|- ++||.+ .|+|
T Consensus 7 Eil~~ePSsvC~ge~f~Vvv~G~GF~~~~---~~d~ViC~F~~n~t~~~~~KP~-~v~dt~llCPaP~l~~~G~~~~v~V 82 (105)
T PF05587_consen 7 EILSVEPSSVCVGESFQVVVRGNGFNNAR---NVDQVICRFKFNDTKTVDEKPV-SVEDTYLLCPAPVLEEPGQTIFVEV 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEcCCceECCCceEEEEECccccccC---CCCeEEEEEEECCeeEEEeCCc-EEcCCEEECCCccccCCCCEEEEEE
Confidence 57788888888899999999999 66432 234566766 32 2 4444 7899999999997 599964 6677
Q ss_pred EeCCCc
Q 001972 482 TGSNRL 487 (988)
Q Consensus 482 t~~n~~ 487 (988)
+..|+.
T Consensus 83 SlNnG~ 88 (105)
T PF05587_consen 83 SLNNGK 88 (105)
T ss_dssp ------
T ss_pred EEcCCE
Confidence 766544
No 267
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=28.13 E-value=9.9e+02 Score=30.74 Aligned_cols=37 Identities=11% Similarity=-0.108 Sum_probs=23.9
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhh
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 974 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l 974 (988)
|..+.|+.....+.++.+|..+++.+.+....+..|+
T Consensus 404 ~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~ 440 (1265)
T KOG0976|consen 404 RLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQL 440 (1265)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555566666666677777777766666666665
No 268
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.00 E-value=1.1e+03 Score=28.26 Aligned_cols=41 Identities=7% Similarity=-0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH-HhhhhhhcccCcchHhHHhhhHhHHHHHHH
Q 001972 943 RDQYMRMVAKF-ENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 983 (988)
Q Consensus 943 R~qyrrl~~el-~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~ 983 (988)
+.++..+..+. .++..++...+.++..++.++..++.++..
T Consensus 275 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 275 NSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444332 245555666666666777777766666654
No 269
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.87 E-value=5.3e+02 Score=33.87 Aligned_cols=60 Identities=10% Similarity=-0.057 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhh-------hcccCcchHhHHhhhHhHHH
Q 001972 920 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMC-------DDGSGLLSQGEDSLNGPTKD 979 (988)
Q Consensus 920 kq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~-------l~~~~~~~~~L~~~l~~lk~ 979 (988)
+.....++++...+-... +..+.++||+.+...++..... +..++.++..|-.+|..||.
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444 5667777777777555444333 44456666666666666666
No 270
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=27.85 E-value=36 Score=28.40 Aligned_cols=25 Identities=0% Similarity=-0.371 Sum_probs=16.9
Q ss_pred HhhhhhhcccCcchHhHHhhhHhHH
Q 001972 954 ENFKMCDDGSGLLSQGEDSLNGPTK 978 (988)
Q Consensus 954 ~~ak~~l~~~~~~~~~L~~~l~~lk 978 (988)
..|+..+.+++.+|..|+.+|.-++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777777776554
No 271
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.84 E-value=1.6e+03 Score=30.51 Aligned_cols=41 Identities=5% Similarity=-0.009 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHH
Q 001972 942 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 942 AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
++.+...+..++...+...+.++.++..+...+..++++++
T Consensus 868 ~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 908 (1163)
T COG1196 868 LEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444433
No 272
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.47 E-value=3.3e+02 Score=32.66 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001972 840 RKDFLKIRNHIVKLQAHVRGHQVRKQ 865 (988)
Q Consensus 840 Rk~f~~~r~~~v~IQa~~Rg~~aRk~ 865 (988)
|++|+.+....++.|+++.|+..+++
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K~~ 326 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQKSQ 326 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 55666677777888888888776553
No 273
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=27.45 E-value=23 Score=30.33 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.9
Q ss_pred ccCcccee
Q 001972 70 KDGHRWRK 77 (988)
Q Consensus 70 ~dg~~w~~ 77 (988)
.|||.|||
T Consensus 2 ~DGy~WRK 9 (59)
T smart00774 2 DDGYQWRK 9 (59)
T ss_pred CCcccccc
Confidence 59999987
No 274
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=27.31 E-value=6e+02 Score=32.71 Aligned_cols=41 Identities=7% Similarity=-0.045 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHH
Q 001972 939 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 979 (988)
Q Consensus 939 ~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~ 979 (988)
..++++|++.+..++.+-+..|+..+....-++.||.++|+
T Consensus 439 ~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~ 479 (742)
T PRK05561 439 EIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAK 479 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444444444344444444444443
No 275
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.23 E-value=1.1e+03 Score=27.85 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=6.7
Q ss_pred hHhHHhhhHhHHHHHH
Q 001972 967 SQGEDSLNGPTKDNLH 982 (988)
Q Consensus 967 ~~~L~~~l~~lk~~l~ 982 (988)
..+|+.++..++.++.
T Consensus 320 ~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 320 EAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 276
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=27.22 E-value=7.6e+02 Score=28.62 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=12.6
Q ss_pred cCcchHhHHhhhHhHHHHHHHh
Q 001972 963 SGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 963 ~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
......+++.++..++.++...
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666543
No 277
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.20 E-value=3.6e+02 Score=28.23 Aligned_cols=36 Identities=6% Similarity=-0.002 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHH
Q 001972 945 QYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 980 (988)
Q Consensus 945 qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~ 980 (988)
+..+..+|+++.|.++++.+.+.+.|+.|.+.+.++
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555666666777776666543
No 278
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.10 E-value=97 Score=29.77 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 943 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 943 R~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
.++...|..++.+-|..+..+..+|..|+-|...|++.|...
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666666666666666666666666543
No 279
>smart00338 BRLZ basic region leucin zipper.
Probab=26.89 E-value=1.3e+02 Score=25.70 Aligned_cols=29 Identities=3% Similarity=-0.127 Sum_probs=15.3
Q ss_pred hhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 956 FKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 956 ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
.......++.++.+|+.++..|+.++..+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555665555555555543
No 280
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.86 E-value=48 Score=31.64 Aligned_cols=37 Identities=8% Similarity=-0.076 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHH
Q 001972 944 DQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 980 (988)
Q Consensus 944 ~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~ 980 (988)
..|..++.++.+.+.++.+++.++..|+.++..||..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4566666667777777777777777777777777763
No 281
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=26.78 E-value=98 Score=27.40 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=39.3
Q ss_pred cHhhHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 001972 651 TALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 710 (988)
Q Consensus 651 TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~ 710 (988)
..|..|...|+.++++.+++.+ .++ ...+..|+..-+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4679999999999999999765 221 3569999999999999999985
No 282
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.74 E-value=7.5e+02 Score=29.79 Aligned_cols=18 Identities=0% Similarity=-0.222 Sum_probs=8.0
Q ss_pred cchHhHHhhhHhHHHHHH
Q 001972 965 LLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 965 ~~~~~L~~~l~~lk~~l~ 982 (988)
-.+.+++.++..++.+++
T Consensus 275 P~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKE 292 (498)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 283
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.56 E-value=7e+02 Score=32.05 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=20.6
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHH
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 979 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~ 979 (988)
...+.++|+..+..+..+-+.-|........-++.||.+.++
T Consensus 425 e~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~ 466 (735)
T TIGR01062 425 EEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADAT 466 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444444444444444443
No 284
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.44 E-value=9.5e+02 Score=26.94 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 946 YMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 946 yrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
++.++..+.+.+..+..++.+-..|...+..++-+.+.|
T Consensus 223 ~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 223 VKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444445555555555555555555554
No 285
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.96 E-value=1e+02 Score=27.48 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=33.3
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
++..|=+.+..++.+..+.|.+...+..++..|+.+...||++-.++
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777777776667777788888888777776665
No 286
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.88 E-value=5.7e+02 Score=28.01 Aligned_cols=17 Identities=6% Similarity=0.260 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhhh
Q 001972 943 RDQYMRMVAKFENFKMC 959 (988)
Q Consensus 943 R~qyrrl~~el~~ak~~ 959 (988)
.++|.+++.+..+.+.+
T Consensus 87 ~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 87 YEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666555444433
No 287
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.71 E-value=1.6e+02 Score=36.49 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=4.5
Q ss_pred HHHHHHHhhh
Q 001972 881 LRWRRRGSGL 890 (988)
Q Consensus 881 ~rwr~~r~~l 890 (988)
.+|..+...|
T Consensus 178 ~~w~~~~~~L 187 (555)
T TIGR03545 178 QKWKKRKKDL 187 (555)
T ss_pred HHHHHHHHhc
Confidence 3444444444
No 288
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=25.51 E-value=1.6e+02 Score=28.59 Aligned_cols=64 Identities=16% Similarity=-0.072 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHhhh----hhhcccCcchHhHHhhhHhHHHHHH
Q 001972 914 FLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFK----MCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 914 ~L~~~rkq~e~~~~~a~~rVqs~~r~~~AR~qyrrl~~el~~ak----~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
.|.+..+.+|.++ +|-..=.+|+-...| ++-..+++.+. .-+..+.++...|+.|...|+++++
T Consensus 53 ~L~e~i~~LE~RL-RaGlCDRC~VtqE~a----kK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eElk 120 (120)
T PF10482_consen 53 TLHENIKVLENRL-RAGLCDRCTVTQELA----KKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEELK 120 (120)
T ss_pred HHHHHHHHHHHHH-hcccchHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 3444444444444 333333344433333 33444444333 2355577888888888888888874
No 289
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.49 E-value=1.4e+03 Score=28.40 Aligned_cols=45 Identities=2% Similarity=-0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 940 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 940 ~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
.....+...++++++.++..+..++.++.-|+.+|.++...-..-
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt 323 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRT 323 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666667777777777766655443333
No 290
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=25.09 E-value=3.3e+02 Score=28.91 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=23.0
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhh
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 974 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l 974 (988)
+...+|+|...+..+-+.++..|.+++-.+..|..+.
T Consensus 148 ~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 148 RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666766666666666666666555555555443
No 291
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.76 E-value=1.6e+02 Score=36.37 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 001972 870 VWSVSIVEKAILRWRRRGSGLRGFRVGN 897 (988)
Q Consensus 870 ~~sv~~lqk~~~rwr~~r~~lr~~~~~~ 897 (988)
++.+...++....|..++........++
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~L 187 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDL 187 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666777665555554
No 292
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.52 E-value=1.1e+03 Score=26.94 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.1
Q ss_pred chHhHHhhhHhHHHHHHHhhh
Q 001972 966 LSQGEDSLNGPTKDNLHAYVA 986 (988)
Q Consensus 966 ~~~~L~~~l~~lk~~l~~~~~ 986 (988)
.+..+..+-..|+.||..|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~ 223 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSE 223 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999998875
No 293
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.60 E-value=4e+02 Score=26.89 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccC---cchHhHHhhhHhHHHHHH
Q 001972 911 EYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSG---LLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 911 ~~~~L~~~rkq~e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~---~~~~~L~~~l~~lk~~l~ 982 (988)
..+.+....++++.+..+.-..|.++. +...+-.++.++...+.+++..++... +.+..|...|..|-++|.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 345566666666666666677777777 677777777777777766665544433 334455555555555544
No 294
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.49 E-value=2.8e+02 Score=24.56 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=27.8
Q ss_pred HHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 927 EKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 927 ~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
++.-++||..+ -+..++-+...++++-.....+....+-..+.|..+..+||++-+++
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455565555 44444444444444333333333333444555555666666655543
No 295
>PRK02224 chromosome segregation protein; Provisional
Probab=23.33 E-value=1.2e+03 Score=30.24 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=20.0
Q ss_pred hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHH
Q 001972 938 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 980 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~ 980 (988)
+...++++|.++...+...+..++..+.....+..+++.++.+
T Consensus 647 ~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~ 689 (880)
T PRK02224 647 RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444444444444444444444444333
No 296
>PRK03918 chromosome segregation protein; Provisional
Probab=22.63 E-value=6.2e+02 Score=32.87 Aligned_cols=6 Identities=17% Similarity=1.010 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001972 944 DQYMRM 949 (988)
Q Consensus 944 ~qyrrl 949 (988)
.+|..+
T Consensus 666 ~~~~~l 671 (880)
T PRK03918 666 EEYLEL 671 (880)
T ss_pred HHHHHH
Confidence 333333
No 297
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.54 E-value=1.5e+03 Score=27.97 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhh-----hhcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHH
Q 001972 918 GRKQKFAGVEKALERVKSM-----VRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 981 (988)
Q Consensus 918 ~rkq~e~~~~~a~~rVqs~-----~r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l 981 (988)
.|+.+|..++.-+.+|+.. .-...||++.++++..+...++++..+++.+..|-.+|..|+-+|
T Consensus 265 nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 265 NRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred hHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhh
Confidence 3444444444444444421 145668899999997776666677776666666666666555544
No 298
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=22.47 E-value=9.4e+02 Score=25.48 Aligned_cols=7 Identities=0% Similarity=0.045 Sum_probs=2.7
Q ss_pred HhHHHHH
Q 001972 975 GPTKDNL 981 (988)
Q Consensus 975 ~~lk~~l 981 (988)
..+.+++
T Consensus 157 ~~le~e~ 163 (201)
T PF12072_consen 157 EKLEEEA 163 (201)
T ss_pred HHHHHHH
Confidence 3333333
No 299
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.45 E-value=7.8e+02 Score=27.19 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHHHHHHh
Q 001972 939 NPEARDQYMRMVAKFEN 955 (988)
Q Consensus 939 ~~~AR~qyrrl~~el~~ 955 (988)
...++.+|.+..+.+..
T Consensus 158 R~~~Q~~le~k~e~l~k 174 (243)
T cd07666 158 RDQIQAELDSKVEALAN 174 (243)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555555544433
No 300
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=22.10 E-value=6.8e+02 Score=25.00 Aligned_cols=57 Identities=5% Similarity=-0.013 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHH
Q 001972 926 VEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 926 ~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
+..++.....+. ....++.....++..+.++|..+.....+..+|..+-...++-|+
T Consensus 67 Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~ 124 (142)
T PF04048_consen 67 FNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIE 124 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 344555555555 677888888888888888888888877777777776665555544
No 301
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.64 E-value=2e+03 Score=28.97 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHhhhHhHHHHHH
Q 001972 923 FAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 982 (988)
Q Consensus 923 e~~~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~~l~~lk~~l~ 982 (988)
...+.++..+++..+ .-..++++..+.+.+++..|..-++.++.+...+.+|..++++|+
T Consensus 296 ~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 296 QRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334455555555555 335555555555555555554444455555555555555554443
No 302
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.58 E-value=1.6e+02 Score=29.81 Aligned_cols=48 Identities=4% Similarity=-0.068 Sum_probs=26.2
Q ss_pred hcHHHHHHHHHHHHHHHhhh-------hhhcccCcchHhHHhhhHhHHHHHHHhh
Q 001972 938 RNPEARDQYMRMVAKFENFK-------MCDDGSGLLSQGEDSLNGPTKDNLHAYV 985 (988)
Q Consensus 938 r~~~AR~qyrrl~~el~~ak-------~~l~~~~~~~~~L~~~l~~lk~~l~~~~ 985 (988)
+...+|+++...+.||+..- .++.++..|+.+|+.+|..++.+...-+
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666664422 2244556666666666666665554433
No 303
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=21.38 E-value=70 Score=34.60 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=32.9
Q ss_pred HHHcCCCCCccCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHccCCCCC
Q 001972 668 LVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 716 (988)
Q Consensus 668 LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~eiv~~Lle~Ga~~~~ 716 (988)
|++.||-.|..+ ....||-++|...|+..+.+.|++.|+.+.+
T Consensus 1 lle~ga~wn~id------~~n~t~gd~a~ern~~rly~~lv~~gv~Sel 43 (271)
T KOG1709|consen 1 LLEYGAGWNFID------YENKTVGDLALERNQSRLYRRLVEAGVPSEL 43 (271)
T ss_pred CcccCCCccccC------hhhCCchHHHHHccHHHHHHHHHHcCCchhh
Confidence 456778777777 5778888888888888888888888855443
No 304
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.20 E-value=2.6e+02 Score=28.30 Aligned_cols=9 Identities=0% Similarity=-0.270 Sum_probs=3.2
Q ss_pred HHhhhHhHH
Q 001972 970 EDSLNGPTK 978 (988)
Q Consensus 970 L~~~l~~lk 978 (988)
|..||..|+
T Consensus 94 L~kEI~~Lr 102 (143)
T PRK11546 94 VAKEMENLR 102 (143)
T ss_pred HHHHHHHHH
Confidence 333333333
No 305
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.15 E-value=8e+02 Score=31.79 Aligned_cols=6 Identities=33% Similarity=0.484 Sum_probs=2.4
Q ss_pred CCcHhh
Q 001972 649 GRTALH 654 (988)
Q Consensus 649 G~TpLH 654 (988)
|-|.+.
T Consensus 339 GKTt~l 344 (782)
T PRK00409 339 GKTVTL 344 (782)
T ss_pred CcHHHH
Confidence 444433
No 306
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.95 E-value=4.8e+02 Score=30.08 Aligned_cols=79 Identities=6% Similarity=0.028 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------cHHHHHHHHHHHHHHHhhhhhhcccCcchHhHH
Q 001972 909 TDEYEFLRIGRKQKFAGVEKALERVKSMVR-----------------NPEARDQYMRMVAKFENFKMCDDGSGLLSQGED 971 (988)
Q Consensus 909 ~~~~~~L~~~rkq~e~~~~~a~~rVqs~~r-----------------~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~ 971 (988)
.+..+|+.....+++.++.+|-.+++.+-+ ...++.++..+..++.+.+......-=.+..++
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~ 248 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ 248 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Q ss_pred hhhHhHHHHHHHhhhc
Q 001972 972 SLNGPTKDNLHAYVAD 987 (988)
Q Consensus 972 ~~l~~lk~~l~~~~~~ 987 (988)
.++.+++.+|.+..+.
T Consensus 249 ~~i~~l~~~i~~e~~~ 264 (362)
T TIGR01010 249 ARIKSLRKQIDEQRNQ 264 (362)
T ss_pred HHHHHHHHHHHHHHHH
No 307
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.94 E-value=2.1e+02 Score=29.97 Aligned_cols=30 Identities=3% Similarity=-0.153 Sum_probs=14.3
Q ss_pred hhhhhhcccCcchHhHHhhhHhHHHHHHHh
Q 001972 955 NFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 955 ~ak~~l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
..+.++++++.++.+...++..||+|.+.+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555443
No 308
>PRK12704 phosphodiesterase; Provisional
Probab=20.75 E-value=1.3e+03 Score=28.34 Aligned_cols=6 Identities=0% Similarity=0.169 Sum_probs=2.2
Q ss_pred hHHHHH
Q 001972 976 PTKDNL 981 (988)
Q Consensus 976 ~lk~~l 981 (988)
.+++++
T Consensus 162 ~~~~~~ 167 (520)
T PRK12704 162 KVEEEA 167 (520)
T ss_pred HHHHHH
Confidence 333333
No 309
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.73 E-value=1.3e+03 Score=26.42 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhh-hcHHHHHHHHHHHHHHHhhhhhhcccCcchHhHHh
Q 001972 926 VEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDS 972 (988)
Q Consensus 926 ~~~a~~rVqs~~-r~~~AR~qyrrl~~el~~ak~~l~~~~~~~~~L~~ 972 (988)
+.+....|..+. ...+.+++...+...+++.+.+.....+++.++..
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443 44555555555555555555555555555555544
No 310
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.62 E-value=4e+02 Score=26.16 Aligned_cols=7 Identities=14% Similarity=0.634 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001972 943 RDQYMRM 949 (988)
Q Consensus 943 R~qyrrl 949 (988)
+..|..+
T Consensus 81 ~~ry~t~ 87 (120)
T PF12325_consen 81 QQRYQTL 87 (120)
T ss_pred HHHHHHH
Confidence 3333333
No 311
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=20.62 E-value=2e+02 Score=33.59 Aligned_cols=15 Identities=20% Similarity=0.011 Sum_probs=9.6
Q ss_pred hcHHHHHHHHHHHHH
Q 001972 938 RNPEARDQYMRMVAK 952 (988)
Q Consensus 938 r~~~AR~qyrrl~~e 952 (988)
+...|+++|+|++.-
T Consensus 116 ~l~~a~~~~~R~~~L 130 (385)
T PRK09578 116 AHLAALDKRRRYDDL 130 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445677777777643
No 312
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.45 E-value=5e+02 Score=29.28 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHhCC
Q 001972 593 RLCEWLVWKIHEGG 606 (988)
Q Consensus 593 ~l~e~Lv~~Lle~G 606 (988)
.++.||++++-+.|
T Consensus 63 sLaawLikk~G~e~ 76 (384)
T KOG0972|consen 63 SLAAWLIKKSGQEG 76 (384)
T ss_pred HHHHHHHHhcCCcc
Confidence 34666666543333
No 313
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=20.45 E-value=5.7e+02 Score=27.74 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=50.3
Q ss_pred CCceEEeeCCc-ccc--eEEEecCeEEEecCCCCCceeEEEEEeCCCcccccceeeeeecCCCCCCCCccccCCCchHhH
Q 001972 443 DTKWGCMFGEI-EVP--AEVLTDNVIRCQAPSHAAGRVPFYITGSNRLACSEVREFEYREKPSKAGYPVASKIAPEDEVR 519 (988)
Q Consensus 443 ~~~~~c~FGd~-~Vp--ae~~~~gvLrC~~Pph~pG~V~l~Vt~~n~~~~Sev~~FeYr~~~~~~~~~~~~~~~~~~e~~ 519 (988)
-.+++|-||.+ ++- .=.+.+|-|||..-|.-+|+-++.=.-.|...-.+-.. -|.... .+ ..++|..
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v-~f~g~~--dl-------~~~~e~~ 77 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV-LFDGDT--DL-------TKLPEHR 77 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceE-EEcCch--hh-------ccCCHHH
Confidence 34688999999 444 22389999999999999999988655445444222222 222211 11 3556666
Q ss_pred HHHHHHHhhccCCccc
Q 001972 520 LQTRLAKFLYLDPERK 535 (988)
Q Consensus 520 Lq~Rl~~LL~~~~~~~ 535 (988)
...+-....+..|..+
T Consensus 78 IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 78 IARAGIGRKFQKPTVF 93 (249)
T ss_pred HHHhccCccccCCeeh
Confidence 6555555555555443
No 314
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=20.39 E-value=1.5e+02 Score=31.36 Aligned_cols=93 Identities=10% Similarity=-0.102 Sum_probs=50.3
Q ss_pred CCCcHHHHHHHcCChhhhHHHHhCCCCCCccCCCCCcHhhHHHhcCCHHHH----HHHHHcCCCCCccCCCCCCCCCCCc
Q 001972 615 GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV----IMLVKLGAAPGAVEDPTPAFPGGQT 690 (988)
Q Consensus 615 ~G~TpLH~AA~~G~~~iV~~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV----~~LL~~GAd~n~~dd~~~~d~~G~T 690 (988)
..++.+-+||...+.++|+++-. +....+ -.+-+-.|......++. .+++++...-.-.| | +.--.-
T Consensus 75 ~~q~LFElAC~~qkydiV~WI~q---nL~i~~--~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d-~---~~ll~~ 145 (192)
T PF03158_consen 75 LNQELFELACEEQKYDIVKWIGQ---NLHIYN--PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNED-P---TSLLTQ 145 (192)
T ss_pred HHHHHHHHHHHHccccHHHHHhh---ccCCCC--chhhhhhhhhccchhHHHHHHHHHHhhcccccccC-H---HHHHHH
Confidence 45667778888888888888732 222211 12445556666655542 23444422210111 0 000113
Q ss_pred HHHHHHHcCcHHHHHHHHHccCCCCC
Q 001972 691 AADLASSRGHKGIAGYLAEADLSSHL 716 (988)
Q Consensus 691 PLhlAa~~G~~eiv~~Lle~Ga~~~~ 716 (988)
-|+.|+..|...-+.-.++.|.+.+.
T Consensus 146 hl~~a~~kgll~F~letlkygg~~~~ 171 (192)
T PF03158_consen 146 HLEKAAAKGLLPFVLETLKYGGNVDI 171 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccH
Confidence 46678888888877777777777775
No 315
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.37 E-value=4.7e+02 Score=30.19 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhhh-hcccCcchHhHHhhhHhHHH
Q 001972 943 RDQYMRMVAKFENFKMC-DDGSGLLSQGEDSLNGPTKD 979 (988)
Q Consensus 943 R~qyrrl~~el~~ak~~-l~~~~~~~~~L~~~l~~lk~ 979 (988)
|++++.++..+++.+.. ..+..+.+++|+.++...+.
T Consensus 45 kkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 45 KKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 44455555555554433 22334455555555555443
No 316
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.05 E-value=2.1e+02 Score=29.33 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhhh--hcccCcchHhHHhhhHhHHHHHHHh
Q 001972 943 RDQYMRMVAKFENFKMC--DDGSGLLSQGEDSLNGPTKDNLHAY 984 (988)
Q Consensus 943 R~qyrrl~~el~~ak~~--l~~~~~~~~~L~~~l~~lk~~l~~~ 984 (988)
+.+++.+..++...... .+.+...+..|+.++..+.+.|+.|
T Consensus 92 ~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 92 KKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333 2334455555555555555555544
Done!