BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001973
(988 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 154/273 (56%), Gaps = 3/273 (1%)
Query: 162 ATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPA-EAAKDVGVLVIMVTNEAQAESVL 220
A LR+ + G D+ G A + A E A V LVI+V N AQ VL
Sbjct: 23 ARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVL 82
Query: 221 YGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGEL 280
+G+ ++ L +L +DAPVSGG +A+ GE
Sbjct: 83 FGEDGVAHLXKPGSAVXVSSTISSADAQEIAAALT--ALNLNXLDAPVSGGAVKAAQGEX 140
Query: 281 TIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFG 340
T+ A+G+E + VL A++ +Y I GAGS VK+ +QLLAGVHIA+AAEA A
Sbjct: 141 TVXASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALA 200
Query: 341 ARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQR 400
AR G+ V ++++T + G+SW FENR H++D DYTP SA+DIFVKD+G++A + R
Sbjct: 201 ARAGIPLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTPRSAVDIFVKDLGLVADTAKALR 260
Query: 401 VPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433
PL +++ A F + S AG+G++DD+AV+K++
Sbjct: 261 FPLPLASTALNXFTSASNAGYGKEDDSAVIKIF 293
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGD-AKL 59
+++ LL GVH+ A+ EA +L + GI V YD++++AAGNSW F+N +++ GD
Sbjct: 180 IIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTPR 239
Query: 60 HFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113
++ F+++LG+ D AK L FPLPL + A + + +D+ ++K++
Sbjct: 240 SAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSASNAGYGKEDDSAVIKIF 293
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 146/297 (49%), Gaps = 4/297 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++GFIGLGAMG MA +LL+ TV +D+ + G + + A ++
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
+ N E+V+ G P ++ + +G D VDAP
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDY--VDAP 123
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG K A G LTIM +E + VLS + + +Y + G GAG VK+ N LL G
Sbjct: 124 VSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV-GDTGAGDAVKIVNNLLLG 182
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFV 386
++AS AEA+ G + GL + II S G S+ E ++ ++ D+ A+D+
Sbjct: 183 CNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQH 242
Query: 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEG 443
KD+G+ VPL ++ +A Q+F G A G GR+D +AV+KV+E ++GV V G
Sbjct: 243 KDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG 299
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPN-LLRGDAKL 59
+VN+LL G ++ + EA+ LGV+ G+ P + +II ++G S+ + + ++ GD
Sbjct: 175 IVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAG 234
Query: 60 HF-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118
F ++ ++LG+AL+ K PLP+ A+A Q G + +D ++KVWE + G
Sbjct: 235 GFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTG 294
Query: 119 VNIT 122
V+++
Sbjct: 295 VSVS 298
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 137/290 (47%), Gaps = 10/290 (3%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
VGFIGLG MG MA +L++ + +I YDV+ +FQ+ G + +SPA+ A+ ++
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 209 MVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAPV 268
M+ A G P +L + ++ G +DAPV
Sbjct: 63 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA--VFMDAPV 120
Query: 269 SGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGV 328
SGGV A G LT M G E+ + +L + + V G G G K+ N +L +
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNMLLAI 179
Query: 329 HIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDYTPYSA 381
+ AEAM G RLGL+ ++L I+ S G W + N VP ++D N+Y
Sbjct: 180 SMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFG 239
Query: 382 LDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
+ KD+G+ S + P+ + ++AHQ++ A G+ ++D ++V +
Sbjct: 240 TTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 289
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNY--IPNLLRG-DA 57
+ N++L + +I + EA++LG++ G+ P +L I++ ++G W Y +P ++ G +
Sbjct: 171 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 230
Query: 58 KLHFLNAF-----IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDD 105
++ F ++LG+A D A + P+ L ++AHQ + + ++ D
Sbjct: 231 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKD 283
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 137/290 (47%), Gaps = 10/290 (3%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
VGFIGLG MG MA +L++ + +I YDV+ +FQ+ G + +SPA+ A+ ++
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 209 MVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAPV 268
M+ A G P +L + ++ G +DAPV
Sbjct: 85 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA--VFMDAPV 142
Query: 269 SGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGV 328
SGGV A G LT M G E+ + +L + + V G G G K+ N +L +
Sbjct: 143 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNMLLAI 201
Query: 329 HIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDYTPYSA 381
+ AEAM G RLGL+ ++L I+ S G W + N VP ++D N+Y
Sbjct: 202 SMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFG 261
Query: 382 LDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
+ KD+G+ S + P+ + ++AHQ++ A G+ ++D ++V +
Sbjct: 262 TTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 311
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNY--IPNLLRG-DA 57
+ N++L + +I + EA++LG++ G+ P +L I++ ++G W Y +P ++ G +
Sbjct: 193 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 252
Query: 58 KLHFLNAF-----IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDD 105
++ F ++LG+A D A + P+ L ++AHQ + + ++ D
Sbjct: 253 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKD 305
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 90.5 bits (223), Expect = 4e-18, Method: Composition-based stats.
Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 7/291 (2%)
Query: 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGV 205
+T GF+GLG MG MA +L+R+ F V ++ +G A+SPAE +
Sbjct: 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDI 60
Query: 206 LVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVD 265
+ M+ + A A V +G + + + G + ++
Sbjct: 61 TIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGG--RFLE 118
Query: 266 APVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLL 325
APVSG K A G L I+AAG + G +AL +K + G G G+ +K+ ++
Sbjct: 119 APVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL-GEVGQGARMKLVVNMI 177
Query: 326 AGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIF 385
G + + E MA G GL+ L ++ ++ MF+ + +L ++ L
Sbjct: 178 MGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHM 237
Query: 386 VKDMGIIARECLSQRV--PLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
KD+ + L R+ PLH + A++ F AAG +D AAV +V E
Sbjct: 238 QKDLRLAVE--LGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+V +++ G + A E ++LG G+ L +++ A + +FK LL G+
Sbjct: 172 LVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTS 231
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114
F L ++L +A+++ L PL A A++ + HA++D + +V E
Sbjct: 232 FPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 7/289 (2%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+ GFIGLG MG MA +L+++ +V ++ + +G A +P E + V
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
M+ + A AE V +G P ++ + +G + ++AP
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGG--RFLEAP 120
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSG K A G L I+AAG + +K+ + G G G+ +K+ ++ G
Sbjct: 121 VSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL-GDVGKGAEMKLVVNMVMG 179
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387
+A E +A G + GL T + ++I ++ MF + + D ++ P L K
Sbjct: 180 GMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQK 239
Query: 388 DMGIIARECLSQRV--PLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
D+ + L RV PL S A++LF AAG+G +D +A+ K YE
Sbjct: 240 DLRLAV--ALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 137/300 (45%), Gaps = 4/300 (1%)
Query: 143 SNSVT-RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK 201
SN++T +VGFIGLG G + +LL++ ++++ D + G A++ A+
Sbjct: 1 SNAMTXKVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAE 60
Query: 202 DVGVLVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDL 261
V++ + N + V G+ P ++ L+ +G +
Sbjct: 61 QCDVIITXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKG--V 118
Query: 262 KLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMA 321
+ +DAPVSGG +A G L++ G + + A + + V G GAG+ K+A
Sbjct: 119 EXLDAPVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSV-VHTGDIGAGNVTKLA 177
Query: 322 NQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSA 381
NQ++ ++IA+ +EA+ + G+N +++ I S + + + P + D ++ P
Sbjct: 178 NQVIVALNIAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFR 237
Query: 382 LDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
+D+ +KD+ L ++ + A A G G D +A+ YE L+ V+V
Sbjct: 238 IDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSALACYYEKLAKVEV 297
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+ N ++ +++ A EA++L + G++P ++Y I S + P + + K
Sbjct: 176 LANQVIVALNIAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPG 235
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
F ++ I++L ALD + + LPL A + + H NDD+ L +E + V
Sbjct: 236 FRIDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSALACYYEKLAKV 295
Query: 120 NIT 122
+T
Sbjct: 296 EVT 298
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 9/296 (3%)
Query: 139 ITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV---GGLIANS 195
+ + + + VGF+GLG MG M+ +LL++ F V V+ TL+K + G + S
Sbjct: 14 LVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVT---VWNRTLSKCDELVEHGASVCES 70
Query: 196 PAEAAKDVGVLVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQ 255
PAE K + M+++ A SV++ + L+
Sbjct: 71 PAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDA--ETSLKINEA 128
Query: 256 FEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAG 315
GK + V+ PVSG K A G+L I+AAG + + + L ++ + + G G G
Sbjct: 129 ITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYL-GQVGNG 187
Query: 316 SGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDND 375
+ +K+ ++ G + + +E + + GL++ L +I+ ++ MF+ + P M +
Sbjct: 188 AKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSS 247
Query: 376 YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
Y P L KDM + V + ++ A++ F + G G D +AV++
Sbjct: 248 YPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIE 303
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 125/297 (42%), Gaps = 10/297 (3%)
Query: 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGV 205
+ +V FIGLGAMG+ MA HL R T++ + L + G S A + V
Sbjct: 1 MEKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG-----SEAVPLERVAE 55
Query: 206 LVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVD 265
++ T V P +L RL+ +G + +D
Sbjct: 56 ARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG--VTYLD 113
Query: 266 APVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLL 325
APVSGG A G LT+M G EE+++ L+ + ++V G GAG VK N L
Sbjct: 114 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHV--GPVGAGHAVKAINNAL 171
Query: 326 AGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDI 384
V++ +A E + + G++ +I S G S EN +P +L + AL +
Sbjct: 172 LAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGL 231
Query: 385 FVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
VKD+GI ++ P + +A +++ D +++ E GV++
Sbjct: 232 LVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVEI 288
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPN--LLRGDAKL 59
+N+ L V+L A+ E + V+ G+ ++I+ ++G S +N IP L R K
Sbjct: 167 INNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKT 226
Query: 60 HFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
L +++LGIA+ + P PLL +A + + + D+ +++ E GV
Sbjct: 227 FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGV 286
Query: 120 NI 121
I
Sbjct: 287 EI 288
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 132/302 (43%), Gaps = 12/302 (3%)
Query: 144 NSVTRVGFIGLGAMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEA 199
++ ++GFIGLG G A +L R+ + T IG P + ++G + + +
Sbjct: 1 SNAXKLGFIGLGIXGSPXAINLARAGHQLHVTTIG-----PVADELLSLGAVNVETARQV 55
Query: 200 AKDVGVLVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGK 259
+ ++ I V + Q E VL+G+ P + +R+ G
Sbjct: 56 TEFADIIFIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGA 115
Query: 260 DLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319
D +DAPVSGG A G L+I G ++ + L + + ++ GG G G K
Sbjct: 116 DY--LDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLV-GGNGDGQTCK 172
Query: 320 MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPY 379
+ANQ++ ++I + +EA+ F ++ G + + + SS + E ++ + P
Sbjct: 173 VANQIIVALNIEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPG 232
Query: 380 SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439
+ + KD+ + + + + L + +LF +A G + D +A V+ E +
Sbjct: 233 FKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQALELXANH 292
Query: 440 KV 441
K+
Sbjct: 293 KL 294
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 10/295 (3%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+V FIGLGA G+ A HL R T++ + L + G S A + V
Sbjct: 3 KVAFIGLGAXGYPXAGHLARRFPTLVWNRTFEKALRHQEEFG-----SEAVPLERVAEAR 57
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
++ T V P +L RL+ +G + +DAP
Sbjct: 58 VIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG--VTYLDAP 115
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG A G LT+ G EE+++ L+ + ++V G GAG VK N L
Sbjct: 116 VSGGTSGAEAGTLTVXLGGPEEAVERVRPFLAYAKKVVHV--GPVGAGHAVKAINNALLA 173
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFV 386
V++ +A E + + G++ +I S G S EN +P +L + AL + V
Sbjct: 174 VNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLV 233
Query: 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
KD+GI ++ P + +A +++ D +++ E GV++
Sbjct: 234 KDLGIAXGVLDGEKAPSPLLRLAREVYEXAKRELGPDADHVEALRLLERWGGVEI 288
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPN--LLRGDAKL 59
+N+ L V+L A+ E + V+ G+ ++I+ ++G S +N IP L R K
Sbjct: 167 INNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKT 226
Query: 60 HFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
L +++LGIA + P PLL +A + + D+ +++ E GV
Sbjct: 227 FALGLLVKDLGIAXGVLDGEKAPSPLLRLAREVYEXAKRELGPDADHVEALRLLERWGGV 286
Query: 120 NI 121
I
Sbjct: 287 EI 288
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 121/286 (42%), Gaps = 3/286 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++GF+GLG MG G+ ++LL+ TV ++ F G + +PAE +
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
V++ A+ ++ G V++L + + G + ++AP
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG--RFLEAP 149
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSG + ++ G L I+AAG + S A+ + + + G G + + + ++ G
Sbjct: 150 VSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL-GEVGNAAKMMLIVNMVQG 208
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387
+A+ AE + G + + L +I+ +S + + ++L ++ P L K
Sbjct: 209 SFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQK 268
Query: 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433
D+ + + P ++ A++++ A D +AV + Y
Sbjct: 269 DLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
++ ++++G + E ++L G L DI++ S N+L+G+ K
Sbjct: 201 LIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPD 260
Query: 61 FLNAFIQ-NLGIALDMAKTLAFPLPLLAVAHQ 91
F +IQ +L +A+ + + P P+ A A++
Sbjct: 261 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANE 292
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 264 VDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQ 323
+D PVSGG A G L I A G + + +L +V G G+G K+ANQ
Sbjct: 146 LDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRATHV--GPHGSGQLTKLANQ 203
Query: 324 LLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALD 383
+ G+ I + AEA+ F + G + + IT S + + ++ D+ P + L
Sbjct: 204 XIVGITIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLS 263
Query: 384 IFVKD 388
I +KD
Sbjct: 264 IQLKD 268
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 102/251 (40%), Gaps = 10/251 (3%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++ FIGLG G AT+LL++ + + +D+ + + G A S +A + V++
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
+ E + D P ++ + G L +DAP
Sbjct: 64 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG--LAXLDAP 121
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG A+ G LT G E+L+ + A ++ G GAG K+ N L
Sbjct: 122 VSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIF-HAGPDGAGQVAKVCNNQLLA 180
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLDN-----DYTPYS 380
V AEA A G GL +VL I S G +W E N P + +N DY+
Sbjct: 181 VLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGF 240
Query: 381 ALDIFVKDMGI 391
+ KD+G+
Sbjct: 241 XAQLXAKDLGL 251
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP 50
+ N+ L V I + EA +LGV G+ VL +I ++G +W + Y P
Sbjct: 173 VCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNP 222
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 102/251 (40%), Gaps = 10/251 (3%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++ FIGLG G AT+LL++ + + +D+ + + G A S +A + V++
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
+ E + D P ++ + G L +DAP
Sbjct: 65 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG--LAXLDAP 122
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG A+ G LT G E+L+ + A ++ G GAG K+ N L
Sbjct: 123 VSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIF-HAGPDGAGQVAKVCNNQLLA 181
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLDN-----DYTPYS 380
V AEA A G GL +VL I S G +W E N P + +N DY+
Sbjct: 182 VLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGF 241
Query: 381 ALDIFVKDMGI 391
+ KD+G+
Sbjct: 242 XAQLXAKDLGL 252
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP 50
+ N+ L V I + EA +LGV G+ VL +I ++G +W + Y P
Sbjct: 174 VCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNP 223
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 7/214 (3%)
Query: 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA 200
A + ++G+IGLG MG MAT + V YD+ +T G +A+S
Sbjct: 10 AHTTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADS-VADV 68
Query: 201 KDVGVLVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKD 260
++ I V ++AQ V+ G+ + +E + +D
Sbjct: 69 AAADLIHITVLDDAQVREVV-GELAGHAKPGTVIAIHSTISD----TTAVELARDLKARD 123
Query: 261 LKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKM 320
+ +VDAPVSGG A+ GEL M E + + + + G GAG+ +K+
Sbjct: 124 IHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWA-AVVIHAGEPGAGTRMKL 182
Query: 321 ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNII 354
A +L A+A EAM GL+ + L ++
Sbjct: 183 ARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVV 216
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/298 (18%), Positives = 120/298 (40%), Gaps = 21/298 (7%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++ F+GLG +G +A LL + + ++ ++ +G + + +A G++
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
++ ++A E + + P QL + ++ G V AP
Sbjct: 67 SVLADDAAVEELFSXELVEKLGKDGVHVSXSTIS--PETSRQLAQVHEWYGA--HYVGAP 122
Query: 268 VSGGVK--RASMGELTIMA-AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL 324
+ + RA +G + + AG +E +K ++ + ++ GA + +K+A
Sbjct: 123 IFARPEAVRAKVGNICLSGNAGAKERIKP---IVENFVKGVFDFGDDPGAANVIKLAGNF 179
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYS-ALD 383
+ EA + G++ + ++ +T + ++ +F+N + N Y P +
Sbjct: 180 XIACSLEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFP 239
Query: 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG-----W-----GRQDDAAVVK 431
+ +KD+ + + P + I F++G A G W G DDA + K
Sbjct: 240 LGLKDINLTLQTASDVNAPXPFADIIRNRFISGLAKGRENLDWGALALGASDDAGLTK 297
>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
Length = 323
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGXXXXXXXXXXXRSPAILQVRSTCFK 973
+ + +++L A K +Y VGAFNV NME +SP ILQ K
Sbjct: 3 LCTLRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALK 55
>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
Length = 323
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGXXXXXXXXXXXRSPAILQVRSTCFK 973
+ + +++L A K +Y VGAFNV NME +SP ILQ K
Sbjct: 3 LCTLRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALK 55
>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
Length = 323
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGXXXXXXXXXXXRSPAILQVRSTCFK 973
+ + +++L A K +Y VGAFNV NME +SP ILQ K
Sbjct: 3 LCTLRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALK 55
>pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase
pdb|1GVF|B Chain B, Structure Of Tagatose-1,6-Bisphosphate Aldolase
Length = 286
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%)
Query: 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGXXXXXXXXXXXRSPAILQVRSTCFK 973
I STK LL +A+ YAV AFN++N E RSP IL FK
Sbjct: 3 IISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFK 55
>pdb|1RV8|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|C Chain C, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|D Chain D, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RVG|A Chain A, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|B Chain B, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|C Chain C, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|D Chain D, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
Length = 305
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 926 ELLLNAEKGEYAVGAFNVYNMEGXXXXXXXXXXXRSPAILQVRSTCFK 973
E+L A + Y VGAFNV NME RSP IL + K
Sbjct: 7 EILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMK 54
>pdb|3Q94|A Chain A, The Crystal Structure Of Fructose 1,6-Bisphosphate
Aldolase From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3Q94|B Chain B, The Crystal Structure Of Fructose 1,6-Bisphosphate
Aldolase From Bacillus Anthracis Str. 'ames Ancestor'
Length = 288
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGXXXXXXXXXXXRSPAILQV 967
S KE L A +G+YAVG FN N+E +SP IL V
Sbjct: 8 SXKEXLNKALEGKYAVGQFNXNNLEWTQAILAAAEEEKSPVILGV 52
>pdb|3C4U|A Chain A, Structure Of Class Ii Fructose-Biphosphate Aldolase From
Helicobacter Pylori
pdb|3C4U|B Chain B, Structure Of Class Ii Fructose-Biphosphate Aldolase From
Helicobacter Pylori
pdb|3C52|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
Phosphoglycolohydroxamic Acid, A Competitive Inhibitor
pdb|3C52|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
Phosphoglycolohydroxamic Acid, A Competitive Inhibitor
pdb|3C56|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(3-Hydroxypropyl)-
Glycolohydroxamic Acid Bisphosphate, A Competitive
Inhibitor
pdb|3C56|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(3-Hydroxypropyl)-
Glycolohydroxamic Acid Bisphosphate, A Competitive
Inhibitor
pdb|3N9R|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|K Chain K, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|P Chain P, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|U Chain U, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|Z Chain Z, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|EE Chain e, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|JJ Chain j, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9S|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(4-Hydroxybutyl)-
Glycolohydroxamic Acid Bis- Phosphate, A Competitive
Inhibitor
pdb|3N9S|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(4-Hydroxybutyl)-
Glycolohydroxamic Acid Bis- Phosphate, A Competitive
Inhibitor
Length = 307
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 22/59 (37%)
Query: 926 ELLLNAEKGEYAVGAFNVYNMEGXXXXXXXXXXXRSPAILQVRSTCFKVQYITLVTSSI 984
E+LL A K Y VGAFN N E SP +Q K I + +
Sbjct: 7 EILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMV 65
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYD 176
TA + V+ VG +GLG MG G+A R +V+ +
Sbjct: 295 TASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 331
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYD 176
TA + V+ VG +GLG MG G+A R +V+ +
Sbjct: 310 TASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYD 176
TA + V+ VG +GLG MG G+A R +V+ +
Sbjct: 310 TASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVI 173
TA + V+ VG +GLG MG G+A R +V+
Sbjct: 31 TASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 64
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 146 VTRVGFIGLGAMGFGMATHLLRSNFTVI 173
+ +V IG G MG G+AT L+ SN+ VI
Sbjct: 312 IKKVAIIGGGLMGSGIATALILSNYPVI 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,711,810
Number of Sequences: 62578
Number of extensions: 998993
Number of successful extensions: 2703
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2621
Number of HSP's gapped (non-prelim): 48
length of query: 988
length of database: 14,973,337
effective HSP length: 108
effective length of query: 880
effective length of database: 8,214,913
effective search space: 7229123440
effective search space used: 7229123440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)