Query 001973
Match_columns 988
No_of_seqs 636 out of 5271
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 13:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02858 fructose-bisphosphate 100.0 3E-167 6E-172 1589.0 109.0 983 1-984 178-1162(1378)
2 COG3395 Uncharacterized protei 100.0 3.9E-73 8.5E-78 620.0 36.7 400 478-915 1-412 (413)
3 COG2084 MmsB 3-hydroxyisobutyr 100.0 7.7E-52 1.7E-56 442.0 34.0 285 147-434 1-286 (286)
4 KOG0409 Predicted dehydrogenas 100.0 3.2E-50 6.9E-55 417.2 32.9 291 146-439 35-326 (327)
5 PRK15059 tartronate semialdehy 100.0 8.9E-45 1.9E-49 399.5 35.4 291 147-441 1-291 (292)
6 PRK15461 NADH-dependent gamma- 100.0 1.6E-43 3.5E-48 391.6 36.0 290 147-439 2-292 (296)
7 PLN02858 fructose-bisphosphate 100.0 3.8E-42 8.3E-47 440.5 36.8 296 146-441 4-299 (1378)
8 TIGR01692 HIBADH 3-hydroxyisob 100.0 2.3E-41 5.1E-46 373.6 33.1 280 151-433 1-287 (288)
9 PRK11559 garR tartronate semia 100.0 2.2E-40 4.8E-45 368.1 35.5 291 147-440 3-293 (296)
10 TIGR01505 tartro_sem_red 2-hyd 100.0 2.9E-40 6.3E-45 366.0 35.2 290 148-440 1-290 (291)
11 PLN02350 phosphogluconate dehy 100.0 3.9E-37 8.4E-42 355.6 29.9 268 144-418 4-299 (493)
12 PRK12490 6-phosphogluconate de 100.0 7.6E-37 1.7E-41 339.1 27.5 279 147-434 1-292 (299)
13 PRK09599 6-phosphogluconate de 100.0 2.3E-34 5E-39 319.7 27.8 277 147-433 1-292 (301)
14 TIGR03026 NDP-sugDHase nucleot 100.0 4.1E-32 8.8E-37 314.6 26.9 288 147-467 1-329 (411)
15 TIGR00872 gnd_rel 6-phosphoglu 100.0 8.1E-31 1.7E-35 290.6 28.6 282 147-439 1-292 (298)
16 PTZ00142 6-phosphogluconate de 100.0 8.1E-31 1.8E-35 303.4 27.8 256 147-409 2-283 (470)
17 TIGR00873 gnd 6-phosphoglucona 100.0 4.4E-30 9.5E-35 297.5 25.7 254 148-408 1-278 (467)
18 PRK15182 Vi polysaccharide bio 100.0 9E-30 1.9E-34 293.1 26.6 291 145-467 5-330 (425)
19 PRK09287 6-phosphogluconate de 100.0 2.7E-29 6E-34 289.4 25.5 245 157-408 1-271 (459)
20 COG1004 Ugd Predicted UDP-gluc 100.0 3.4E-29 7.3E-34 271.8 23.3 336 147-525 1-387 (414)
21 PRK15057 UDP-glucose 6-dehydro 100.0 7.3E-29 1.6E-33 282.3 25.3 274 147-467 1-312 (388)
22 PRK11064 wecC UDP-N-acetyl-D-m 100.0 4.2E-28 9.1E-33 279.7 28.1 287 146-467 3-336 (415)
23 PF07005 DUF1537: Protein of u 100.0 1.3E-29 2.8E-34 269.7 11.7 215 640-873 1-223 (223)
24 PF03446 NAD_binding_2: NAD bi 100.0 7E-29 1.5E-33 250.5 15.1 162 146-310 1-162 (163)
25 COG1023 Gnd Predicted 6-phosph 99.9 7.2E-27 1.6E-31 234.1 19.5 279 147-439 1-293 (300)
26 PRK14618 NAD(P)H-dependent gly 99.9 5.7E-26 1.2E-30 256.1 18.9 275 145-434 3-321 (328)
27 PLN02353 probable UDP-glucose 99.9 1.4E-24 3E-29 251.9 28.9 292 146-467 1-340 (473)
28 PRK00094 gpsA NAD(P)H-dependen 99.9 1.4E-24 3E-29 245.0 21.4 274 147-433 2-322 (325)
29 COG0677 WecC UDP-N-acetyl-D-ma 99.9 1.7E-23 3.6E-28 226.1 20.6 256 147-416 10-301 (436)
30 PRK14619 NAD(P)H-dependent gly 99.9 8.8E-24 1.9E-28 235.8 18.2 254 146-434 4-299 (308)
31 PRK06129 3-hydroxyacyl-CoA deh 99.9 8E-22 1.7E-26 220.1 26.1 266 147-432 3-295 (308)
32 COG0362 Gnd 6-phosphogluconate 99.9 1.7E-21 3.7E-26 208.9 19.9 254 147-407 4-282 (473)
33 COG0240 GpsA Glycerol-3-phosph 99.9 2.5E-20 5.5E-25 201.2 20.0 264 147-415 2-310 (329)
34 PF14833 NAD_binding_11: NAD-b 99.8 2.8E-21 6.1E-26 185.3 10.8 113 1-113 8-122 (122)
35 PRK08229 2-dehydropantoate 2-r 99.8 5.5E-20 1.2E-24 208.9 19.7 259 147-423 3-323 (341)
36 COG2084 MmsB 3-hydroxyisobutyr 99.8 2.3E-20 5.1E-25 200.2 12.3 114 1-114 172-286 (286)
37 KOG0409 Predicted dehydrogenas 99.8 4.4E-20 9.5E-25 193.0 12.9 118 1-118 207-325 (327)
38 PRK12557 H(2)-dependent methyl 99.8 2.2E-18 4.9E-23 192.6 24.5 200 147-355 1-237 (342)
39 KOG2653 6-phosphogluconate deh 99.8 5.9E-19 1.3E-23 186.0 16.7 263 146-415 6-294 (487)
40 PRK07531 bifunctional 3-hydrox 99.8 2.9E-18 6.3E-23 202.8 24.0 263 147-431 5-293 (495)
41 PRK07679 pyrroline-5-carboxyla 99.8 7.3E-18 1.6E-22 185.6 19.3 243 145-420 2-269 (279)
42 PRK08268 3-hydroxy-acyl-CoA de 99.8 2E-17 4.3E-22 195.2 23.4 191 145-359 6-227 (507)
43 PRK15059 tartronate semialdehy 99.8 3E-18 6.5E-23 189.1 13.3 120 1-120 170-290 (292)
44 PLN02688 pyrroline-5-carboxyla 99.8 2.8E-17 6E-22 180.1 20.9 242 147-420 1-264 (266)
45 PRK09260 3-hydroxybutyryl-CoA 99.8 3.4E-17 7.5E-22 181.2 20.5 192 147-359 2-222 (288)
46 PF14833 NAD_binding_11: NAD-b 99.7 8.1E-18 1.8E-22 161.3 12.2 121 313-433 1-122 (122)
47 PTZ00345 glycerol-3-phosphate 99.7 1.1E-16 2.3E-21 180.1 22.0 274 145-433 10-353 (365)
48 PRK12439 NAD(P)H-dependent gly 99.7 1.2E-16 2.6E-21 180.5 21.9 268 145-433 6-327 (341)
49 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 1.4E-16 2.9E-21 187.5 19.8 189 147-359 6-225 (503)
50 TIGR03376 glycerol3P_DH glycer 99.7 1.1E-16 2.4E-21 178.8 18.0 258 148-414 1-330 (342)
51 PRK15461 NADH-dependent gamma- 99.7 7.1E-17 1.5E-21 179.1 13.4 119 1-119 172-292 (296)
52 PRK06130 3-hydroxybutyryl-CoA 99.7 1E-15 2.2E-20 171.6 22.8 194 146-361 4-223 (311)
53 PRK07819 3-hydroxybutyryl-CoA 99.7 8.8E-16 1.9E-20 169.0 19.8 196 146-359 5-227 (286)
54 PLN02545 3-hydroxybutyryl-CoA 99.7 1.1E-15 2.3E-20 170.0 19.8 193 146-359 4-224 (295)
55 PRK08507 prephenate dehydrogen 99.7 1.9E-14 4.2E-19 158.2 29.0 192 147-355 1-207 (275)
56 PRK11199 tyrA bifunctional cho 99.7 1.1E-14 2.4E-19 166.2 27.6 253 62-352 20-279 (374)
57 PRK14620 NAD(P)H-dependent gly 99.7 2.9E-15 6.4E-20 169.0 22.5 261 147-414 1-312 (326)
58 PRK07530 3-hydroxybutyryl-CoA 99.7 3.1E-15 6.7E-20 166.0 21.4 192 146-358 4-223 (292)
59 TIGR01692 HIBADH 3-hydroxyisob 99.6 6.7E-16 1.5E-20 170.9 12.5 113 1-113 167-287 (288)
60 TIGR01505 tartro_sem_red 2-hyd 99.6 1.5E-15 3.3E-20 168.5 13.4 119 1-119 170-289 (291)
61 PRK08655 prephenate dehydrogen 99.6 9.2E-14 2E-18 161.6 27.3 195 147-353 1-201 (437)
62 PRK07417 arogenate dehydrogena 99.6 8.6E-15 1.9E-19 161.2 16.1 175 147-332 1-188 (279)
63 TIGR01724 hmd_rel H2-forming N 99.6 1.2E-13 2.5E-18 148.1 23.9 158 147-308 1-192 (341)
64 PRK11559 garR tartronate semia 99.6 5.7E-15 1.2E-19 164.4 13.2 119 1-119 173-292 (296)
65 PRK08293 3-hydroxybutyryl-CoA 99.6 5.2E-14 1.1E-18 155.7 20.5 192 146-359 3-226 (287)
66 PRK07066 3-hydroxybutyryl-CoA 99.6 2.3E-13 4.9E-18 150.8 25.1 261 146-431 7-295 (321)
67 PRK06035 3-hydroxyacyl-CoA deh 99.6 7.4E-14 1.6E-18 154.9 18.4 193 147-359 4-226 (291)
68 PRK12921 2-dehydropantoate 2-r 99.6 1.9E-13 4.2E-18 152.8 22.0 254 147-417 1-301 (305)
69 KOG2666 UDP-glucose/GDP-mannos 99.6 2.1E-13 4.5E-18 142.3 19.7 247 147-402 2-290 (481)
70 PRK06522 2-dehydropantoate 2-r 99.5 3.1E-13 6.7E-18 151.1 21.3 252 147-418 1-299 (304)
71 PRK11880 pyrroline-5-carboxyla 99.5 5.9E-13 1.3E-17 146.0 22.4 252 146-419 2-264 (267)
72 PRK06476 pyrroline-5-carboxyla 99.5 3E-13 6.4E-18 147.4 19.7 239 147-417 1-254 (258)
73 PRK12491 pyrroline-5-carboxyla 99.5 6.1E-13 1.3E-17 145.3 21.6 251 147-418 3-265 (272)
74 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 3.6E-14 7.9E-19 145.6 10.2 147 147-296 1-184 (185)
75 PRK06249 2-dehydropantoate 2-r 99.5 5.2E-13 1.1E-17 149.6 20.3 258 143-418 2-310 (313)
76 COG0191 Fba Fructose/tagatose 99.5 1.9E-14 4.1E-19 151.9 7.5 64 919-982 1-65 (286)
77 PRK05808 3-hydroxybutyryl-CoA 99.5 1E-12 2.2E-17 145.2 21.5 194 146-359 3-223 (282)
78 PRK07680 late competence prote 99.5 1.1E-12 2.4E-17 144.1 20.3 196 147-357 1-205 (273)
79 PRK08269 3-hydroxybutyryl-CoA 99.5 5.7E-13 1.2E-17 148.3 16.3 247 157-427 1-283 (314)
80 PRK12737 gatY tagatose-bisphos 99.5 6.3E-14 1.4E-18 151.6 8.0 64 919-982 1-64 (284)
81 PRK12738 kbaY tagatose-bisphos 99.5 7E-14 1.5E-18 151.0 8.0 64 919-982 1-64 (286)
82 PRK09195 gatY tagatose-bisphos 99.5 7.2E-14 1.6E-18 150.9 7.9 63 919-981 1-63 (284)
83 PRK07502 cyclohexadienyl dehyd 99.5 2E-12 4.3E-17 144.6 19.4 171 145-323 5-191 (307)
84 PRK12857 fructose-1,6-bisphosp 99.5 9.3E-14 2E-18 150.3 8.0 63 919-981 1-63 (284)
85 PRK07709 fructose-bisphosphate 99.4 1.3E-13 2.8E-18 149.1 8.1 63 919-981 1-64 (285)
86 TIGR00167 cbbA ketose-bisphosp 99.4 1.5E-13 3.2E-18 149.2 8.1 63 919-981 1-64 (288)
87 PRK06545 prephenate dehydrogen 99.4 6.8E-12 1.5E-16 143.0 21.9 194 147-355 1-211 (359)
88 PRK06806 fructose-bisphosphate 99.4 1.6E-13 3.4E-18 149.1 8.1 63 919-981 1-63 (281)
89 PRK06801 hypothetical protein; 99.4 1.8E-13 4E-18 148.4 8.2 63 919-981 1-63 (286)
90 PRK13399 fructose-1,6-bisphosp 99.4 1.9E-13 4.1E-18 150.4 8.0 64 919-982 1-64 (347)
91 PRK09196 fructose-1,6-bisphosp 99.4 1.9E-13 4.1E-18 150.1 8.0 64 919-982 1-64 (347)
92 PRK08610 fructose-bisphosphate 99.4 2.4E-13 5.1E-18 146.9 8.0 62 919-980 1-63 (286)
93 PRK05835 fructose-bisphosphate 99.4 2.6E-13 5.7E-18 147.0 7.9 63 920-982 1-63 (307)
94 PRK07315 fructose-bisphosphate 99.4 3E-13 6.5E-18 147.8 8.0 62 919-980 1-63 (293)
95 PRK07998 gatY putative fructos 99.4 3.2E-13 7E-18 145.4 7.8 63 919-981 1-63 (283)
96 PRK07084 fructose-bisphosphate 99.4 3.7E-13 7.9E-18 146.3 7.4 60 918-977 6-65 (321)
97 COG0345 ProC Pyrroline-5-carbo 99.4 2.1E-11 4.5E-16 130.3 20.1 250 147-419 2-263 (266)
98 TIGR01858 tag_bisphos_ald clas 99.4 5.7E-13 1.2E-17 143.9 7.9 61 921-981 1-61 (282)
99 PLN02256 arogenate dehydrogena 99.4 4.1E-11 8.9E-16 132.6 22.2 157 144-308 34-202 (304)
100 TIGR01521 FruBisAldo_II_B fruc 99.4 7.1E-13 1.5E-17 145.4 7.9 62 921-982 1-62 (347)
101 PF01116 F_bP_aldolase: Fructo 99.4 3.3E-13 7.1E-18 146.9 5.1 62 920-981 1-62 (287)
102 PLN02712 arogenate dehydrogena 99.4 4.7E-11 1E-15 145.2 23.5 179 118-308 344-535 (667)
103 PRK05708 2-dehydropantoate 2-r 99.4 2.5E-11 5.5E-16 135.3 19.7 252 146-418 2-298 (305)
104 COG1893 ApbA Ketopantoate redu 99.4 3.7E-11 8.1E-16 133.2 20.6 251 147-419 1-302 (307)
105 COG1250 FadB 3-hydroxyacyl-CoA 99.3 4.3E-11 9.4E-16 130.3 19.2 253 147-428 4-285 (307)
106 PTZ00431 pyrroline carboxylate 99.3 8.9E-11 1.9E-15 127.9 20.9 246 145-418 2-258 (260)
107 PRK07634 pyrroline-5-carboxyla 99.3 6E-11 1.3E-15 128.4 19.3 198 145-357 3-209 (245)
108 COG0287 TyrA Prephenate dehydr 99.3 1E-10 2.2E-15 127.1 20.0 165 146-318 3-178 (279)
109 TIGR01859 fruc_bis_ald_ fructo 99.3 5.1E-12 1.1E-16 137.8 7.9 60 921-980 1-61 (282)
110 TIGR01915 npdG NADPH-dependent 99.3 8.2E-11 1.8E-15 124.9 16.5 162 147-318 1-196 (219)
111 PRK08185 hypothetical protein; 99.3 5E-12 1.1E-16 136.7 7.1 62 924-985 1-62 (283)
112 PF01210 NAD_Gly3P_dh_N: NAD-d 99.3 6.1E-12 1.3E-16 126.2 7.0 138 148-289 1-155 (157)
113 PRK05479 ketol-acid reductoiso 99.3 2.9E-10 6.3E-15 125.7 19.8 193 146-351 17-225 (330)
114 PRK06928 pyrroline-5-carboxyla 99.2 2.5E-10 5.3E-15 125.6 17.7 197 147-358 2-209 (277)
115 PLN02712 arogenate dehydrogena 99.2 4.6E-10 9.9E-15 136.6 21.3 155 146-308 52-218 (667)
116 PRK12490 6-phosphogluconate de 99.2 1.6E-11 3.4E-16 136.7 7.0 113 1-114 173-292 (299)
117 COG2085 Predicted dinucleotide 99.2 2.1E-10 4.5E-15 116.7 14.2 167 146-319 1-188 (211)
118 cd00947 TBP_aldolase_IIB Tagat 99.2 2.2E-11 4.9E-16 131.2 7.2 59 924-982 1-59 (276)
119 TIGR02440 FadJ fatty oxidation 99.2 5.5E-10 1.2E-14 137.5 19.9 186 147-355 305-520 (699)
120 PRK14806 bifunctional cyclohex 99.2 7.3E-10 1.6E-14 138.8 21.3 182 147-336 4-201 (735)
121 PRK11154 fadJ multifunctional 99.2 5.7E-10 1.2E-14 137.7 19.5 186 147-355 310-525 (708)
122 PRK11730 fadB multifunctional 99.2 3.7E-10 7.9E-15 139.3 17.7 190 147-359 314-532 (715)
123 TIGR01520 FruBisAldo_II_A fruc 99.2 2.9E-11 6.3E-16 132.5 7.0 54 923-976 14-67 (357)
124 PF03807 F420_oxidored: NADP o 99.2 7.9E-11 1.7E-15 107.8 8.7 89 148-241 1-95 (96)
125 TIGR02437 FadB fatty oxidation 99.2 5.5E-10 1.2E-14 137.4 18.3 190 147-359 314-532 (714)
126 PF02737 3HCDH_N: 3-hydroxyacy 99.2 1.3E-10 2.8E-15 119.0 10.8 148 148-308 1-177 (180)
127 PRK09197 fructose-bisphosphate 99.1 4.6E-11 9.9E-16 130.9 6.6 54 923-976 8-61 (350)
128 TIGR02441 fa_ox_alpha_mit fatt 99.1 1.2E-09 2.6E-14 134.7 18.5 186 147-355 336-550 (737)
129 PRK08818 prephenate dehydrogen 99.1 3.8E-09 8.2E-14 119.2 20.2 155 146-322 4-166 (370)
130 cd00453 FTBP_aldolase_II Fruct 99.1 1.2E-10 2.7E-15 126.4 7.3 52 925-976 2-54 (340)
131 TIGR03026 NDP-sugDHase nucleot 99.1 2.3E-09 5.1E-14 124.8 18.5 188 1-239 209-409 (411)
132 cd00946 FBP_aldolase_IIA Class 99.1 1.2E-10 2.6E-15 128.3 7.1 54 923-976 3-56 (345)
133 PF10727 Rossmann-like: Rossma 99.1 2.5E-10 5.4E-15 108.9 6.7 100 146-249 10-113 (127)
134 PRK07574 formate dehydrogenase 99.0 2.8E-09 6.2E-14 121.0 12.8 110 146-257 192-301 (385)
135 TIGR00745 apbA_panE 2-dehydrop 99.0 1.9E-08 4.1E-13 111.9 18.8 240 156-416 1-290 (293)
136 TIGR00465 ilvC ketol-acid redu 99.0 2E-08 4.3E-13 111.6 18.6 193 146-357 3-217 (314)
137 KOG2304 3-hydroxyacyl-CoA dehy 98.9 1E-08 2.2E-13 103.3 13.5 253 146-426 11-297 (298)
138 PRK12480 D-lactate dehydrogena 98.9 4.9E-09 1.1E-13 117.6 12.4 105 146-256 146-250 (330)
139 PLN03139 formate dehydrogenase 98.9 5.9E-09 1.3E-13 118.3 13.1 110 146-257 199-308 (386)
140 PRK06436 glycerate dehydrogena 98.9 3.5E-09 7.7E-14 117.0 9.4 103 146-256 122-225 (303)
141 PRK08605 D-lactate dehydrogena 98.9 7.9E-09 1.7E-13 116.4 10.8 106 146-256 146-252 (332)
142 COG4007 Predicted dehydrogenas 98.9 3E-07 6.6E-12 94.5 20.8 200 147-352 2-236 (340)
143 PRK13243 glyoxylate reductase; 98.9 1E-08 2.3E-13 115.4 11.3 107 146-256 150-256 (333)
144 PLN02350 phosphogluconate dehy 98.9 5.4E-09 1.2E-13 122.2 9.2 97 1-97 189-298 (493)
145 PF02826 2-Hacid_dh_C: D-isome 98.8 4.5E-09 9.8E-14 107.8 7.0 108 146-256 36-143 (178)
146 PF02153 PDH: Prephenate dehyd 98.8 1.3E-07 2.7E-12 103.0 18.5 155 161-323 1-170 (258)
147 PRK13403 ketol-acid reductoiso 98.8 1.4E-08 3E-13 110.7 10.8 193 146-350 16-222 (335)
148 cd01065 NAD_bind_Shikimate_DH 98.8 1E-08 2.3E-13 102.6 8.8 112 147-266 20-138 (155)
149 PRK15469 ghrA bifunctional gly 98.8 1E-08 2.2E-13 114.0 8.9 107 146-256 136-242 (312)
150 KOG2380 Prephenate dehydrogena 98.8 1.9E-07 4.2E-12 99.4 17.8 156 145-308 51-218 (480)
151 PRK09599 6-phosphogluconate de 98.8 9.4E-09 2E-13 114.7 7.5 111 1-113 174-292 (301)
152 COG0111 SerA Phosphoglycerate 98.7 3.6E-08 7.7E-13 109.8 10.0 118 146-266 142-259 (324)
153 KOG2711 Glycerol-3-phosphate d 98.7 1.5E-07 3.2E-12 101.3 13.5 273 145-435 20-366 (372)
154 COG1052 LdhA Lactate dehydroge 98.7 8.3E-08 1.8E-12 106.8 11.8 108 146-257 146-253 (324)
155 TIGR01327 PGDH D-3-phosphoglyc 98.7 6E-08 1.3E-12 115.8 10.9 109 146-257 138-246 (525)
156 PRK13581 D-3-phosphoglycerate 98.7 7E-08 1.5E-12 115.3 10.4 107 146-256 140-246 (526)
157 TIGR00112 proC pyrroline-5-car 98.6 1.1E-06 2.3E-11 95.0 17.9 228 169-416 9-243 (245)
158 PRK13302 putative L-aspartate 98.6 2.9E-07 6.2E-12 100.7 12.6 106 144-256 4-114 (271)
159 PLN02928 oxidoreductase family 98.5 2E-07 4.4E-12 105.4 9.6 108 146-256 159-278 (347)
160 PRK00257 erythronate-4-phospha 98.5 2.5E-07 5.3E-12 105.2 10.0 104 146-256 116-223 (381)
161 PF07991 IlvN: Acetohydroxy ac 98.5 3.9E-07 8.4E-12 89.2 9.7 92 146-241 4-96 (165)
162 PRK11790 D-3-phosphoglycerate 98.5 2.8E-07 6.1E-12 106.5 10.2 105 146-256 151-255 (409)
163 PRK08410 2-hydroxyacid dehydro 98.5 5.2E-07 1.1E-11 100.7 11.8 104 146-256 145-248 (311)
164 PRK15409 bifunctional glyoxyla 98.5 5.2E-07 1.1E-11 101.0 10.6 107 146-256 145-252 (323)
165 PRK06487 glycerate dehydrogena 98.4 1.2E-06 2.7E-11 98.0 12.4 102 146-256 148-249 (317)
166 PF00984 UDPG_MGDP_dh: UDP-glu 98.4 1.6E-06 3.6E-11 78.7 10.6 94 313-415 2-95 (96)
167 KOG0069 Glyoxylate/hydroxypyru 98.4 2.9E-06 6.2E-11 93.5 14.1 141 109-256 129-269 (336)
168 PRK06932 glycerate dehydrogena 98.4 8.7E-07 1.9E-11 99.0 10.4 104 146-257 147-250 (314)
169 PRK06444 prephenate dehydrogen 98.4 1.8E-05 4E-10 81.8 18.8 127 147-323 1-133 (197)
170 PRK14194 bifunctional 5,10-met 98.4 6.1E-07 1.3E-11 97.8 8.3 75 145-242 158-233 (301)
171 TIGR02853 spore_dpaA dipicolin 98.4 1.4E-06 3E-11 96.1 10.8 110 146-267 151-262 (287)
172 PRK15438 erythronate-4-phospha 98.4 1.1E-06 2.4E-11 99.6 10.0 104 146-256 116-223 (378)
173 PRK14618 NAD(P)H-dependent gly 98.4 2.7E-07 5.8E-12 104.4 5.0 106 1-113 204-320 (328)
174 PRK06141 ornithine cyclodeamin 98.4 9.7E-07 2.1E-11 98.9 8.6 112 144-266 123-242 (314)
175 PRK13304 L-aspartate dehydroge 98.3 2.7E-06 6E-11 92.9 11.8 104 147-257 2-112 (265)
176 PRK15182 Vi polysaccharide bio 98.3 1.5E-05 3.3E-10 92.7 18.1 199 1-244 209-417 (425)
177 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 4.9E-06 1.1E-10 86.8 12.5 108 146-265 28-137 (200)
178 PLN02306 hydroxypyruvate reduc 98.3 4.8E-06 1E-10 95.2 11.4 109 146-256 165-288 (386)
179 cd05213 NAD_bind_Glutamyl_tRNA 98.2 7.7E-06 1.7E-10 91.6 12.4 154 84-241 112-274 (311)
180 PRK14188 bifunctional 5,10-met 98.2 4.2E-06 9.2E-11 91.5 8.7 75 145-243 157-233 (296)
181 PF02558 ApbA: Ketopantoate re 98.2 3.4E-06 7.4E-11 84.0 7.1 100 149-254 1-114 (151)
182 TIGR00872 gnd_rel 6-phosphoglu 98.2 5.6E-06 1.2E-10 92.2 9.5 116 1-119 172-292 (298)
183 KOG2305 3-hydroxyacyl-CoA dehy 98.2 1.2E-05 2.7E-10 81.4 10.5 203 146-364 3-231 (313)
184 PRK08306 dipicolinate synthase 98.1 1.4E-05 3E-10 88.7 11.3 93 146-245 152-246 (296)
185 KOG3124 Pyrroline-5-carboxylat 98.1 9.9E-05 2.2E-09 77.2 16.2 245 147-419 1-264 (267)
186 PRK06129 3-hydroxyacyl-CoA deh 98.1 7.6E-06 1.6E-10 91.7 8.8 105 2-112 190-295 (308)
187 PRK00094 gpsA NAD(P)H-dependen 98.1 7.3E-06 1.6E-10 92.6 7.5 106 1-113 205-322 (325)
188 PRK14619 NAD(P)H-dependent gly 98.0 6.8E-06 1.5E-10 92.1 6.9 101 1-113 181-298 (308)
189 TIGR00507 aroE shikimate 5-deh 98.0 1.4E-05 3.1E-10 87.6 9.1 112 147-266 118-236 (270)
190 PF01408 GFO_IDH_MocA: Oxidore 97.9 7.3E-05 1.6E-09 71.1 11.1 104 147-257 1-112 (120)
191 PRK14179 bifunctional 5,10-met 97.9 2.2E-05 4.7E-10 85.2 7.8 76 145-243 157-233 (284)
192 PLN00203 glutamyl-tRNA reducta 97.9 7.5E-05 1.6E-09 88.4 12.2 131 84-214 198-341 (519)
193 TIGR02371 ala_DH_arch alanine 97.8 7.9E-05 1.7E-09 83.9 9.9 95 144-246 126-228 (325)
194 PF00670 AdoHcyase_NAD: S-aden 97.8 6.9E-05 1.5E-09 74.2 8.2 93 146-245 23-115 (162)
195 PF01488 Shikimate_DH: Shikima 97.8 2.9E-05 6.2E-10 75.8 5.6 90 146-240 12-109 (135)
196 PTZ00075 Adenosylhomocysteinas 97.8 7.3E-05 1.6E-09 86.4 9.3 92 145-243 253-344 (476)
197 PRK11064 wecC UDP-N-acetyl-D-m 97.8 0.00034 7.3E-09 81.5 14.9 175 1-214 213-398 (415)
198 PRK05225 ketol-acid reductoiso 97.7 7.2E-05 1.6E-09 85.0 8.4 88 147-239 37-130 (487)
199 PRK15057 UDP-glucose 6-dehydro 97.7 0.00062 1.4E-08 78.4 16.3 167 1-219 198-375 (388)
200 PLN02494 adenosylhomocysteinas 97.7 0.0002 4.3E-09 82.6 12.0 91 146-243 254-344 (477)
201 TIGR01763 MalateDH_bact malate 97.7 0.00019 4.2E-09 80.0 11.4 66 147-213 2-80 (305)
202 COG1712 Predicted dinucleotide 97.7 0.00027 5.8E-09 72.4 11.2 102 147-255 1-109 (255)
203 smart00859 Semialdhyde_dh Semi 97.7 0.0001 2.3E-09 70.5 8.0 90 148-243 1-102 (122)
204 TIGR00936 ahcY adenosylhomocys 97.7 0.00029 6.3E-09 80.7 12.5 93 145-244 194-286 (406)
205 PRK05476 S-adenosyl-L-homocyst 97.7 0.00024 5.3E-09 81.8 11.3 93 145-244 211-303 (425)
206 PF01113 DapB_N: Dihydrodipico 97.6 0.0003 6.5E-09 67.5 9.9 102 147-255 1-113 (124)
207 TIGR01921 DAP-DH diaminopimela 97.6 0.00057 1.2E-08 75.7 13.4 99 146-253 3-107 (324)
208 COG0059 IlvC Ketol-acid reduct 97.6 0.0002 4.3E-09 76.6 9.3 89 146-238 18-107 (338)
209 PRK06223 malate dehydrogenase; 97.6 0.00016 3.4E-09 81.1 8.7 66 146-212 2-80 (307)
210 COG1748 LYS9 Saccharopine dehy 97.6 0.00035 7.5E-09 79.1 11.2 103 146-256 1-114 (389)
211 PRK00045 hemA glutamyl-tRNA re 97.6 0.00029 6.3E-09 82.4 11.0 70 145-214 181-254 (423)
212 PLN02353 probable UDP-glucose 97.6 0.0029 6.4E-08 74.5 19.2 201 1-244 217-451 (473)
213 PRK13301 putative L-aspartate 97.6 0.00051 1.1E-08 73.5 11.5 116 147-270 3-126 (267)
214 PRK13940 glutamyl-tRNA reducta 97.6 0.00033 7.2E-09 81.1 10.8 130 84-214 115-254 (414)
215 COG0373 HemA Glutamyl-tRNA red 97.5 0.00044 9.5E-09 78.7 11.1 128 84-214 112-250 (414)
216 PRK07340 ornithine cyclodeamin 97.5 0.00034 7.4E-09 78.0 10.1 94 145-247 124-224 (304)
217 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00049 1.1E-08 79.2 11.4 90 146-242 202-291 (413)
218 COG5495 Uncharacterized conser 97.5 0.0017 3.6E-08 66.6 13.6 189 146-347 10-205 (289)
219 PRK09287 6-phosphogluconate de 97.5 0.00018 4E-09 84.1 7.4 122 315-440 304-440 (459)
220 PRK04148 hypothetical protein; 97.5 0.00086 1.9E-08 64.5 10.2 93 147-244 18-115 (134)
221 PRK13303 L-aspartate dehydroge 97.5 0.0007 1.5E-08 74.0 10.9 104 147-257 2-112 (265)
222 PRK08229 2-dehydropantoate 2-r 97.4 0.00016 3.5E-09 82.3 6.1 93 11-105 216-325 (341)
223 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00068 1.5E-08 79.1 11.0 70 145-214 179-252 (417)
224 PRK09310 aroDE bifunctional 3- 97.4 0.00066 1.4E-08 80.5 10.3 102 147-265 333-437 (477)
225 cd05292 LDH_2 A subgroup of L- 97.4 0.001 2.3E-08 74.3 11.4 66 147-213 1-78 (308)
226 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.00055 1.2E-08 69.2 8.1 74 146-242 44-118 (168)
227 PRK00066 ldh L-lactate dehydro 97.4 0.00069 1.5E-08 75.9 9.6 73 141-213 1-84 (315)
228 cd05297 GH4_alpha_glucosidase_ 97.4 0.00086 1.9E-08 78.4 10.7 67 147-213 1-85 (423)
229 PRK00048 dihydrodipicolinate r 97.4 0.00088 1.9E-08 72.9 10.1 99 147-252 2-104 (257)
230 PRK06823 ornithine cyclodeamin 97.3 0.00099 2.1E-08 74.5 10.0 96 144-247 126-229 (315)
231 PF01118 Semialdhyde_dh: Semia 97.3 0.00036 7.9E-09 66.7 5.6 89 148-243 1-100 (121)
232 PRK06407 ornithine cyclodeamin 97.3 0.00086 1.9E-08 74.6 9.3 95 145-247 116-219 (301)
233 TIGR00518 alaDH alanine dehydr 97.3 0.00044 9.5E-09 79.3 7.2 95 146-242 167-269 (370)
234 KOG0068 D-3-phosphoglycerate d 97.3 0.0011 2.4E-08 71.8 9.3 106 147-256 147-252 (406)
235 TIGR02992 ectoine_eutC ectoine 97.3 0.0011 2.3E-08 74.9 10.0 90 145-242 128-226 (326)
236 PF00056 Ldh_1_N: lactate/mala 97.3 0.00082 1.8E-08 66.1 7.9 67 147-213 1-80 (141)
237 cd05291 HicDH_like L-2-hydroxy 97.3 0.001 2.2E-08 74.5 9.5 67 147-213 1-79 (306)
238 PRK06046 alanine dehydrogenase 97.3 0.00089 1.9E-08 75.6 9.0 94 144-246 127-229 (326)
239 PTZ00082 L-lactate dehydrogena 97.2 0.0017 3.6E-08 73.0 10.9 65 145-210 5-82 (321)
240 PRK08618 ornithine cyclodeamin 97.2 0.0014 3E-08 74.0 10.2 94 145-247 126-228 (325)
241 COG0569 TrkA K+ transport syst 97.2 0.0019 4E-08 68.8 9.9 68 147-214 1-78 (225)
242 COG1004 Ugd Predicted UDP-gluc 97.2 0.019 4.2E-07 64.3 18.0 190 2-239 208-407 (414)
243 PRK00258 aroE shikimate 5-dehy 97.2 0.0017 3.7E-08 71.6 9.9 97 147-245 124-226 (278)
244 PRK08300 acetaldehyde dehydrog 97.2 0.0024 5.3E-08 70.1 10.9 92 145-243 3-104 (302)
245 COG0673 MviM Predicted dehydro 97.1 0.0039 8.5E-08 70.8 12.9 105 145-256 2-116 (342)
246 PTZ00117 malate dehydrogenase; 97.1 0.0026 5.7E-08 71.4 10.9 64 146-210 5-81 (319)
247 COG2423 Predicted ornithine cy 97.1 0.0022 4.8E-08 71.4 9.9 113 145-267 129-250 (330)
248 TIGR00036 dapB dihydrodipicoli 97.1 0.0043 9.4E-08 67.8 11.9 103 147-256 2-116 (266)
249 cd01339 LDH-like_MDH L-lactate 97.1 0.0016 3.6E-08 72.6 8.7 63 149-212 1-76 (300)
250 PF02423 OCD_Mu_crystall: Orni 97.0 0.00081 1.8E-08 75.3 6.0 96 145-246 127-230 (313)
251 cd05191 NAD_bind_amino_acid_DH 97.0 0.0025 5.5E-08 56.9 8.0 62 147-240 24-86 (86)
252 PRK00961 H(2)-dependent methyl 97.0 0.024 5.1E-07 59.9 15.6 111 188-308 127-241 (342)
253 TIGR01723 hmd_TIGR 5,10-methen 97.0 0.031 6.6E-07 59.2 16.5 114 188-308 125-239 (340)
254 PRK07589 ornithine cyclodeamin 97.0 0.002 4.4E-08 72.7 8.4 97 145-247 128-232 (346)
255 PRK08291 ectoine utilization p 97.0 0.0023 4.9E-08 72.4 8.8 70 145-214 131-209 (330)
256 cd01078 NAD_bind_H4MPT_DH NADP 97.0 0.0021 4.6E-08 66.9 8.0 92 147-244 29-133 (194)
257 PRK11579 putative oxidoreducta 97.0 0.0084 1.8E-07 68.4 13.5 103 146-256 4-113 (346)
258 PRK06199 ornithine cyclodeamin 96.9 0.0024 5.1E-08 73.3 8.2 89 144-237 153-256 (379)
259 PRK12549 shikimate 5-dehydroge 96.9 0.0028 6.1E-08 70.0 8.5 165 54-246 34-233 (284)
260 PRK00436 argC N-acetyl-gamma-g 96.9 0.003 6.5E-08 71.7 8.7 89 147-243 3-102 (343)
261 PLN02819 lysine-ketoglutarate 96.8 0.012 2.6E-07 74.8 14.5 103 146-256 569-694 (1042)
262 TIGR01761 thiaz-red thiazoliny 96.8 0.016 3.4E-07 65.5 13.8 103 146-256 3-113 (343)
263 cd05294 LDH-like_MDH_nadp A la 96.8 0.0031 6.8E-08 70.5 8.1 66 147-213 1-83 (309)
264 cd05293 LDH_1 A subgroup of L- 96.8 0.0083 1.8E-07 67.1 11.4 66 146-212 3-81 (312)
265 TIGR01850 argC N-acetyl-gamma- 96.8 0.0037 8E-08 71.1 8.6 90 147-243 1-102 (346)
266 TIGR03215 ac_ald_DH_ac acetald 96.8 0.0062 1.3E-07 66.7 9.9 89 147-242 2-97 (285)
267 TIGR00873 gnd 6-phosphoglucona 96.8 0.0028 6.1E-08 74.6 7.6 122 315-440 312-448 (467)
268 PRK09496 trkA potassium transp 96.7 0.0054 1.2E-07 72.7 9.9 69 147-215 1-78 (453)
269 PF02254 TrkA_N: TrkA-N domain 96.7 0.017 3.7E-07 54.4 11.2 72 149-220 1-80 (116)
270 PRK14175 bifunctional 5,10-met 96.7 0.0059 1.3E-07 66.7 8.6 74 146-242 158-232 (286)
271 PRK04207 glyceraldehyde-3-phos 96.6 0.0081 1.8E-07 68.1 10.0 39 147-185 2-42 (341)
272 cd00300 LDH_like L-lactate deh 96.6 0.0066 1.4E-07 67.7 9.0 65 149-214 1-78 (300)
273 cd00650 LDH_MDH_like NAD-depen 96.6 0.0067 1.5E-07 66.4 8.9 62 149-210 1-78 (263)
274 TIGR00561 pntA NAD(P) transhyd 96.6 0.0071 1.5E-07 71.3 9.4 90 147-242 165-286 (511)
275 PF01262 AlaDh_PNT_C: Alanine 96.6 0.004 8.7E-08 63.2 6.3 93 146-241 20-140 (168)
276 COG2344 AT-rich DNA-binding pr 96.6 0.0098 2.1E-07 59.5 8.6 112 74-214 37-158 (211)
277 PRK03659 glutathione-regulated 96.5 0.018 3.8E-07 70.6 12.7 99 147-250 401-507 (601)
278 PRK10669 putative cation:proto 96.5 0.022 4.8E-07 69.4 13.4 74 147-220 418-499 (558)
279 TIGR02354 thiF_fam2 thiamine b 96.5 0.013 2.8E-07 61.2 9.4 33 146-178 21-54 (200)
280 PRK05472 redox-sensing transcr 96.5 0.014 3.1E-07 61.6 9.8 116 72-215 35-159 (213)
281 PF03435 Saccharop_dh: Sacchar 96.4 0.012 2.6E-07 68.2 9.8 100 149-256 1-113 (386)
282 PTZ00142 6-phosphogluconate de 96.4 0.0072 1.6E-07 71.2 7.5 123 314-440 317-454 (470)
283 PRK05442 malate dehydrogenase; 96.4 0.01 2.2E-07 66.7 8.4 69 144-212 2-90 (326)
284 PRK14189 bifunctional 5,10-met 96.4 0.01 2.2E-07 64.8 8.1 75 145-242 157-232 (285)
285 PRK06718 precorrin-2 dehydroge 96.4 0.029 6.2E-07 58.7 11.2 71 145-215 9-83 (202)
286 PRK00676 hemA glutamyl-tRNA re 96.3 0.014 3E-07 65.3 9.0 120 84-210 109-234 (338)
287 PRK06349 homoserine dehydrogen 96.3 0.012 2.5E-07 69.0 8.8 105 146-256 3-121 (426)
288 PF13460 NAD_binding_10: NADH( 96.3 0.011 2.3E-07 60.6 7.5 62 149-212 1-70 (183)
289 PF10100 DUF2338: Uncharacteri 96.3 0.86 1.9E-05 51.5 22.4 266 147-419 2-395 (429)
290 KOG2741 Dimeric dihydrodiol de 96.3 0.051 1.1E-06 59.9 12.8 114 145-266 5-129 (351)
291 PRK09424 pntA NAD(P) transhydr 96.3 0.011 2.4E-07 70.0 8.2 46 146-191 165-210 (509)
292 PRK10206 putative oxidoreducta 96.2 0.033 7E-07 63.5 11.8 103 147-256 2-113 (344)
293 PRK15076 alpha-galactosidase; 96.2 0.0072 1.6E-07 70.6 6.2 67 147-213 2-86 (431)
294 COG2910 Putative NADH-flavin r 96.1 0.0085 1.8E-07 59.9 5.4 67 147-213 1-73 (211)
295 PLN02968 Probable N-acetyl-gam 96.1 0.01 2.3E-07 68.0 7.1 90 146-243 38-137 (381)
296 TIGR01759 MalateDH-SF1 malate 96.1 0.031 6.7E-07 62.8 10.6 69 145-213 2-90 (323)
297 PLN02602 lactate dehydrogenase 96.1 0.022 4.8E-07 64.6 9.4 65 147-212 38-115 (350)
298 cd01483 E1_enzyme_family Super 96.1 0.036 7.9E-07 54.5 9.9 113 148-270 1-124 (143)
299 PRK05671 aspartate-semialdehyd 96.1 0.0099 2.1E-07 67.0 6.5 89 145-242 3-99 (336)
300 PF02882 THF_DHG_CYH_C: Tetrah 96.0 0.02 4.4E-07 57.2 7.4 75 146-243 36-111 (160)
301 PF00393 6PGD: 6-phosphoglucon 96.0 0.015 3.3E-07 63.2 6.9 96 315-410 1-106 (291)
302 TIGR01809 Shik-DH-AROM shikima 95.9 0.017 3.7E-07 63.8 7.4 67 147-213 126-201 (282)
303 cd05311 NAD_bind_2_malic_enz N 95.9 0.036 7.7E-07 59.1 9.2 89 146-241 25-129 (226)
304 PRK00683 murD UDP-N-acetylmura 95.9 0.06 1.3E-06 63.1 12.0 67 147-213 4-70 (418)
305 PRK02318 mannitol-1-phosphate 95.8 0.026 5.6E-07 65.2 8.7 105 147-255 1-136 (381)
306 PRK03562 glutathione-regulated 95.8 0.061 1.3E-06 66.1 12.3 75 146-220 400-482 (621)
307 PRK10792 bifunctional 5,10-met 95.8 0.031 6.7E-07 61.0 8.5 74 146-242 159-233 (285)
308 cd01338 MDH_choloroplast_like 95.8 0.031 6.8E-07 62.8 8.9 67 147-213 3-89 (322)
309 PRK05086 malate dehydrogenase; 95.8 0.037 8E-07 62.0 9.3 67 147-213 1-80 (312)
310 PF13380 CoA_binding_2: CoA bi 95.8 0.02 4.4E-07 54.2 6.1 102 147-264 1-106 (116)
311 COG0002 ArgC Acetylglutamate s 95.7 0.031 6.7E-07 61.8 8.3 91 146-243 2-104 (349)
312 CHL00194 ycf39 Ycf39; Provisio 95.7 0.023 5.1E-07 63.9 7.4 65 147-211 1-73 (317)
313 PRK14982 acyl-ACP reductase; P 95.7 0.026 5.6E-07 63.4 7.5 89 145-240 154-246 (340)
314 PRK14192 bifunctional 5,10-met 95.6 0.032 7E-07 61.3 7.8 75 145-242 158-233 (283)
315 PRK14106 murD UDP-N-acetylmura 95.6 0.073 1.6E-06 63.1 11.5 67 146-212 5-78 (450)
316 PLN00112 malate dehydrogenase 95.6 0.048 1E-06 63.4 9.4 68 146-213 100-187 (444)
317 TIGR01470 cysG_Nterm siroheme 95.6 0.11 2.4E-06 54.5 11.4 111 146-256 9-142 (205)
318 PRK06719 precorrin-2 dehydroge 95.5 0.069 1.5E-06 53.5 9.3 110 145-256 12-142 (157)
319 TIGR02356 adenyl_thiF thiazole 95.5 0.063 1.4E-06 56.2 9.1 35 146-180 21-56 (202)
320 cd05211 NAD_bind_Glu_Leu_Phe_V 95.5 0.3 6.5E-06 51.6 14.3 171 146-354 23-211 (217)
321 PRK11863 N-acetyl-gamma-glutam 95.4 0.027 5.9E-07 62.6 6.6 80 146-242 2-83 (313)
322 PRK14191 bifunctional 5,10-met 95.4 0.038 8.3E-07 60.3 7.6 75 145-242 156-231 (285)
323 PRK14176 bifunctional 5,10-met 95.4 0.045 9.7E-07 59.8 8.1 74 146-242 164-238 (287)
324 PRK01710 murD UDP-N-acetylmura 95.4 0.11 2.5E-06 61.5 12.3 64 147-210 15-85 (458)
325 PRK09496 trkA potassium transp 95.4 0.11 2.4E-06 61.6 12.1 92 146-241 231-332 (453)
326 cd01487 E1_ThiF_like E1_ThiF_l 95.3 0.069 1.5E-06 54.5 8.6 32 148-179 1-33 (174)
327 PF03720 UDPG_MGDP_dh_C: UDP-g 95.3 0.032 6.9E-07 52.0 5.6 83 157-242 18-103 (106)
328 PRK00421 murC UDP-N-acetylmura 95.3 0.08 1.7E-06 62.9 10.3 112 145-256 6-131 (461)
329 cd01337 MDH_glyoxysomal_mitoch 95.2 0.048 1E-06 60.8 7.7 67 147-213 1-79 (310)
330 cd05290 LDH_3 A subgroup of L- 95.2 0.038 8.3E-07 61.7 6.8 65 148-212 1-78 (307)
331 TIGR01757 Malate-DH_plant mala 95.2 0.097 2.1E-06 59.9 10.1 68 146-213 44-131 (387)
332 PRK06270 homoserine dehydrogen 95.2 0.095 2.1E-06 59.6 10.0 106 147-256 3-142 (341)
333 PRK08664 aspartate-semialdehyd 95.2 0.054 1.2E-06 61.8 8.1 89 146-242 3-109 (349)
334 COG0686 Ald Alanine dehydrogen 95.2 0.032 6.8E-07 60.3 5.6 91 147-240 169-268 (371)
335 PRK02472 murD UDP-N-acetylmura 95.1 0.15 3.4E-06 60.2 12.2 65 146-210 5-76 (447)
336 cd01336 MDH_cytoplasmic_cytoso 95.1 0.11 2.4E-06 58.6 10.3 66 147-212 3-88 (325)
337 PLN00106 malate dehydrogenase 95.1 0.093 2E-06 58.9 9.5 67 147-213 19-97 (323)
338 cd00704 MDH Malate dehydrogena 95.1 0.049 1.1E-06 61.2 7.4 66 148-213 2-87 (323)
339 cd01076 NAD_bind_1_Glu_DH NAD( 95.1 0.11 2.5E-06 55.2 9.6 106 146-264 31-156 (227)
340 PRK14183 bifunctional 5,10-met 95.1 0.066 1.4E-06 58.3 7.9 75 145-242 156-231 (281)
341 COG0039 Mdh Malate/lactate deh 95.0 0.1 2.2E-06 57.8 9.2 67 147-213 1-80 (313)
342 PRK14874 aspartate-semialdehyd 95.0 0.045 9.8E-07 62.0 6.8 89 147-242 2-96 (334)
343 PTZ00325 malate dehydrogenase; 95.0 0.065 1.4E-06 60.0 7.9 69 145-213 7-87 (321)
344 COG0169 AroE Shikimate 5-dehyd 94.9 0.1 2.2E-06 57.2 9.1 168 53-246 34-232 (283)
345 PRK03369 murD UDP-N-acetylmura 94.9 0.15 3.4E-06 60.9 11.4 67 147-213 13-81 (488)
346 PRK12475 thiamine/molybdopteri 94.9 0.11 2.3E-06 59.0 9.3 34 146-179 24-58 (338)
347 PRK01390 murD UDP-N-acetylmura 94.9 0.15 3.2E-06 60.6 11.1 63 147-209 10-72 (460)
348 PF05368 NmrA: NmrA-like famil 94.9 0.057 1.2E-06 57.7 6.9 64 149-212 1-74 (233)
349 PRK07688 thiamine/molybdopteri 94.8 0.13 2.8E-06 58.4 9.6 113 146-268 24-149 (339)
350 PRK08040 putative semialdehyde 94.8 0.043 9.4E-07 61.8 5.7 90 145-242 3-99 (336)
351 COG0771 MurD UDP-N-acetylmuram 94.7 0.11 2.4E-06 60.4 9.1 111 146-256 7-134 (448)
352 PRK06728 aspartate-semialdehyd 94.7 0.056 1.2E-06 60.9 6.5 89 146-242 5-101 (347)
353 COG4408 Uncharacterized protei 94.7 6.7 0.00014 43.1 21.4 266 145-419 3-397 (431)
354 PLN02383 aspartate semialdehyd 94.7 0.062 1.3E-06 60.9 6.9 90 146-242 7-102 (344)
355 PF03447 NAD_binding_3: Homose 94.7 0.11 2.5E-06 49.1 7.6 97 153-256 1-109 (117)
356 PRK14178 bifunctional 5,10-met 94.6 0.078 1.7E-06 57.7 7.1 74 146-242 152-226 (279)
357 COG1064 AdhP Zn-dependent alco 94.6 0.14 3E-06 57.3 9.2 74 146-220 167-246 (339)
358 cd05212 NAD_bind_m-THF_DH_Cycl 94.6 0.17 3.8E-06 49.4 8.9 75 146-243 28-103 (140)
359 PF07479 NAD_Gly3P_dh_C: NAD-d 94.6 0.0074 1.6E-07 59.7 -0.9 106 311-416 19-139 (149)
360 PRK00141 murD UDP-N-acetylmura 94.5 0.19 4.2E-06 59.8 10.9 64 147-210 16-82 (473)
361 TIGR01772 MDH_euk_gproteo mala 94.5 0.092 2E-06 58.7 7.6 66 148-213 1-78 (312)
362 TIGR01296 asd_B aspartate-semi 94.4 0.045 9.7E-07 62.1 4.9 88 148-242 1-94 (339)
363 cd01079 NAD_bind_m-THF_DH NAD 94.4 0.11 2.4E-06 53.2 7.2 88 146-242 62-158 (197)
364 PRK08644 thiamine biosynthesis 94.3 0.14 3.1E-06 53.9 8.1 34 146-179 28-62 (212)
365 TIGR00978 asd_EA aspartate-sem 94.1 0.11 2.4E-06 59.1 7.3 89 147-242 1-106 (341)
366 COG0499 SAM1 S-adenosylhomocys 94.1 0.35 7.6E-06 53.5 10.6 89 146-241 209-297 (420)
367 PRK07326 short chain dehydroge 94.1 0.27 5.8E-06 52.4 10.0 43 144-186 4-47 (237)
368 PRK14170 bifunctional 5,10-met 94.1 0.16 3.6E-06 55.4 8.1 76 145-243 156-232 (284)
369 PRK14573 bifunctional D-alanyl 94.0 0.33 7.2E-06 61.9 12.0 114 145-258 3-130 (809)
370 PRK12548 shikimate 5-dehydroge 94.0 0.17 3.7E-06 56.1 8.3 40 147-186 127-170 (289)
371 PRK08306 dipicolinate synthase 94.0 0.18 4E-06 56.0 8.5 110 147-266 3-120 (296)
372 TIGR01851 argC_other N-acetyl- 93.9 0.22 4.9E-06 55.1 8.9 79 147-242 2-82 (310)
373 PF00899 ThiF: ThiF family; I 93.9 0.071 1.5E-06 51.9 4.6 113 147-269 3-126 (135)
374 PRK02006 murD UDP-N-acetylmura 93.9 0.52 1.1E-05 56.7 12.9 64 146-209 7-76 (498)
375 COG0289 DapB Dihydrodipicolina 93.9 0.45 9.8E-06 50.9 10.7 103 146-254 2-115 (266)
376 PRK01438 murD UDP-N-acetylmura 93.9 0.47 1E-05 56.7 12.5 66 146-211 16-87 (480)
377 TIGR01758 MDH_euk_cyt malate d 93.9 0.12 2.6E-06 58.1 6.9 66 148-213 1-86 (324)
378 TIGR01771 L-LDH-NAD L-lactate 93.7 0.17 3.7E-06 56.4 7.7 63 151-213 1-75 (299)
379 TIGR01082 murC UDP-N-acetylmur 93.7 0.33 7.1E-06 57.5 10.6 110 148-257 1-124 (448)
380 PRK14173 bifunctional 5,10-met 93.7 0.21 4.7E-06 54.6 8.1 75 145-242 154-229 (287)
381 PRK07774 short chain dehydroge 93.7 0.36 7.8E-06 51.9 10.0 90 143-242 3-93 (250)
382 PRK05653 fabG 3-ketoacyl-(acyl 93.6 0.36 7.8E-06 51.5 9.9 41 145-185 4-45 (246)
383 PRK07454 short chain dehydroge 93.6 0.38 8.3E-06 51.4 10.1 42 145-186 5-47 (241)
384 PF13241 NAD_binding_7: Putati 93.6 0.17 3.6E-06 46.8 6.2 71 145-219 6-77 (103)
385 PRK14169 bifunctional 5,10-met 93.6 0.22 4.7E-06 54.4 7.9 75 145-242 155-230 (282)
386 PRK14186 bifunctional 5,10-met 93.5 0.23 5E-06 54.6 8.0 75 146-243 158-233 (297)
387 PRK14166 bifunctional 5,10-met 93.5 0.23 5E-06 54.2 7.9 75 145-242 156-231 (282)
388 PRK08223 hypothetical protein; 93.4 0.39 8.5E-06 52.7 9.6 116 146-270 27-154 (287)
389 PRK08328 hypothetical protein; 93.4 0.38 8.3E-06 51.5 9.5 114 147-270 28-153 (231)
390 PRK03803 murD UDP-N-acetylmura 93.4 0.46 9.9E-06 56.3 11.1 111 146-256 6-132 (448)
391 PRK14180 bifunctional 5,10-met 93.4 0.24 5.2E-06 54.1 7.8 74 146-242 158-232 (282)
392 PF02629 CoA_binding: CoA bind 93.3 0.061 1.3E-06 49.1 2.7 68 147-215 4-75 (96)
393 PRK14177 bifunctional 5,10-met 93.3 0.28 6E-06 53.6 8.2 75 146-243 159-234 (284)
394 KOG4153 Fructose 1,6-bisphosph 93.3 0.05 1.1E-06 56.7 2.4 78 891-969 14-91 (358)
395 COG1063 Tdh Threonine dehydrog 93.3 0.36 7.8E-06 55.1 9.6 88 148-242 171-271 (350)
396 TIGR02355 moeB molybdopterin s 93.2 0.38 8.3E-06 51.7 9.1 114 147-270 25-149 (240)
397 PRK07067 sorbitol dehydrogenas 93.2 0.54 1.2E-05 50.9 10.4 88 141-241 1-89 (257)
398 PLN02516 methylenetetrahydrofo 93.2 0.28 6E-06 54.0 8.0 76 145-243 166-242 (299)
399 PRK14172 bifunctional 5,10-met 93.2 0.28 6.1E-06 53.4 8.0 75 145-242 157-232 (278)
400 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.2 5.3 0.00012 47.9 19.5 65 286-359 388-452 (503)
401 PRK06392 homoserine dehydrogen 93.1 0.21 4.6E-06 56.1 7.2 92 147-241 1-117 (326)
402 COG0460 ThrA Homoserine dehydr 93.1 0.64 1.4E-05 51.8 10.7 137 146-308 3-163 (333)
403 PRK07523 gluconate 5-dehydroge 93.1 0.43 9.3E-06 51.6 9.5 42 145-186 9-51 (255)
404 PRK07109 short chain dehydroge 93.1 0.53 1.1E-05 53.4 10.5 88 145-242 7-95 (334)
405 PRK06200 2,3-dihydroxy-2,3-dih 93.0 0.6 1.3E-05 50.7 10.6 86 144-242 4-90 (263)
406 PF02056 Glyco_hydro_4: Family 93.0 0.13 2.8E-06 52.6 4.8 66 148-213 1-84 (183)
407 PRK08374 homoserine dehydrogen 93.0 0.27 5.9E-06 55.7 8.0 89 147-242 3-124 (336)
408 TIGR01546 GAPDH-II_archae glyc 93.0 0.32 6.8E-06 54.6 8.3 38 149-186 1-40 (333)
409 PRK14027 quinate/shikimate deh 93.0 0.24 5.2E-06 54.7 7.3 41 147-187 128-169 (283)
410 PRK14187 bifunctional 5,10-met 93.0 0.3 6.6E-06 53.6 7.9 75 145-242 159-234 (294)
411 cd00757 ThiF_MoeB_HesA_family 92.9 0.48 1E-05 50.6 9.3 40 146-185 21-61 (228)
412 TIGR02717 AcCoA-syn-alpha acet 92.9 0.59 1.3E-05 55.2 10.9 69 146-220 7-81 (447)
413 PRK14171 bifunctional 5,10-met 92.9 0.31 6.7E-06 53.3 7.8 75 145-242 158-233 (288)
414 PRK06180 short chain dehydroge 92.9 0.65 1.4E-05 51.0 10.7 84 146-242 4-88 (277)
415 PRK14190 bifunctional 5,10-met 92.9 0.31 6.8E-06 53.3 7.8 75 145-242 157-232 (284)
416 KOG1502 Flavonol reductase/cin 92.9 0.26 5.6E-06 54.7 7.2 65 145-209 5-85 (327)
417 PRK11861 bifunctional prephena 92.7 0.99 2.1E-05 56.3 13.1 115 206-327 1-127 (673)
418 PRK05678 succinyl-CoA syntheta 92.7 0.66 1.4E-05 51.3 10.2 111 144-264 6-120 (291)
419 PRK06182 short chain dehydroge 92.7 0.8 1.7E-05 50.1 11.1 81 146-242 3-84 (273)
420 KOG3007 Mu-crystallin [Amino a 92.7 0.29 6.4E-06 51.8 6.9 110 146-266 138-260 (333)
421 PRK12769 putative oxidoreducta 92.7 0.34 7.5E-06 60.2 9.0 35 145-179 326-360 (654)
422 PRK14182 bifunctional 5,10-met 92.7 0.36 7.9E-06 52.7 8.0 75 145-242 156-231 (282)
423 PRK13394 3-hydroxybutyrate deh 92.6 0.59 1.3E-05 50.5 9.8 85 146-242 7-94 (262)
424 COG0026 PurK Phosphoribosylami 92.6 0.17 3.8E-06 56.4 5.5 60 147-206 2-66 (375)
425 COG0190 FolD 5,10-methylene-te 92.6 0.31 6.8E-06 52.7 7.2 75 145-242 155-230 (283)
426 PLN00141 Tic62-NAD(P)-related 92.6 0.33 7.1E-06 52.5 7.6 40 146-185 17-57 (251)
427 PRK04308 murD UDP-N-acetylmura 92.5 1.3 2.8E-05 52.5 13.2 67 146-212 5-77 (445)
428 PRK14193 bifunctional 5,10-met 92.5 0.39 8.5E-06 52.5 8.0 74 146-242 158-234 (284)
429 PRK08773 2-octaprenyl-3-methyl 92.4 0.15 3.2E-06 59.2 5.0 39 141-179 1-39 (392)
430 PLN02897 tetrahydrofolate dehy 92.4 0.37 8E-06 53.8 7.8 74 146-242 214-288 (345)
431 PRK05993 short chain dehydroge 92.4 0.86 1.9E-05 50.0 10.9 42 147-188 5-47 (277)
432 PRK14181 bifunctional 5,10-met 92.4 0.41 9E-06 52.4 8.0 75 145-242 152-231 (287)
433 COG1648 CysG Siroheme synthase 92.4 2 4.4E-05 45.1 12.9 111 145-256 11-145 (210)
434 PRK05690 molybdopterin biosynt 92.4 0.64 1.4E-05 50.2 9.5 112 147-268 33-155 (245)
435 PRK12429 3-hydroxybutyrate deh 92.3 0.72 1.6E-05 49.7 10.0 86 146-241 4-90 (258)
436 PRK05866 short chain dehydroge 92.3 0.81 1.8E-05 50.8 10.5 87 146-242 40-127 (293)
437 PRK06139 short chain dehydroge 92.3 0.81 1.8E-05 51.8 10.7 86 146-241 7-93 (330)
438 PRK07236 hypothetical protein; 92.3 0.17 3.6E-06 58.7 5.3 37 144-180 4-40 (386)
439 PRK08265 short chain dehydroge 92.3 0.86 1.9E-05 49.5 10.6 84 145-241 5-89 (261)
440 PRK12939 short chain dehydroge 92.3 0.77 1.7E-05 49.2 10.1 41 146-186 7-48 (250)
441 PRK12809 putative oxidoreducta 92.3 0.43 9.4E-06 59.1 9.1 34 146-179 310-343 (639)
442 cd01485 E1-1_like Ubiquitin ac 92.2 0.71 1.5E-05 48.2 9.3 113 147-267 20-145 (198)
443 PRK12828 short chain dehydroge 92.2 0.99 2.1E-05 47.8 10.7 85 146-242 7-92 (239)
444 cd08230 glucose_DH Glucose deh 92.2 0.7 1.5E-05 52.8 10.1 47 146-192 173-222 (355)
445 COG4091 Predicted homoserine d 92.2 1.4 3E-05 48.7 11.4 147 147-307 18-182 (438)
446 TIGR01087 murD UDP-N-acetylmur 92.1 0.55 1.2E-05 55.3 9.4 109 148-256 1-126 (433)
447 PRK07478 short chain dehydroge 92.0 0.86 1.9E-05 49.2 10.1 42 145-186 5-47 (254)
448 TIGR01318 gltD_gamma_fam gluta 92.0 0.56 1.2E-05 55.8 9.3 34 146-179 141-174 (467)
449 cd01492 Aos1_SUMO Ubiquitin ac 92.0 1.1 2.4E-05 46.6 10.4 112 147-269 22-144 (197)
450 PRK02705 murD UDP-N-acetylmura 92.0 0.58 1.2E-05 55.6 9.4 65 148-212 2-78 (459)
451 cd05197 GH4_glycoside_hydrolas 91.9 0.36 7.8E-06 56.4 7.3 67 147-213 1-85 (425)
452 PRK03806 murD UDP-N-acetylmura 91.9 0.84 1.8E-05 53.9 10.6 65 145-210 5-73 (438)
453 PRK12826 3-ketoacyl-(acyl-carr 91.9 0.76 1.6E-05 49.2 9.5 41 145-185 5-46 (251)
454 TIGR03649 ergot_EASG ergot alk 91.9 0.44 9.5E-06 52.6 7.7 65 148-212 1-77 (285)
455 PRK10538 malonic semialdehyde 91.9 1 2.3E-05 48.4 10.5 82 147-241 1-83 (248)
456 PF00070 Pyr_redox: Pyridine n 91.9 0.3 6.5E-06 42.7 5.1 33 148-180 1-33 (80)
457 PLN03209 translocon at the inn 91.8 0.42 9.2E-06 57.3 7.8 41 146-186 80-121 (576)
458 PRK06598 aspartate-semialdehyd 91.8 0.25 5.5E-06 56.1 5.7 88 147-242 2-100 (369)
459 PRK05867 short chain dehydroge 91.8 0.84 1.8E-05 49.2 9.7 42 145-186 8-50 (253)
460 PRK12749 quinate/shikimate deh 91.8 0.48 1E-05 52.4 7.8 41 147-187 125-169 (288)
461 PRK08163 salicylate hydroxylas 91.7 0.2 4.4E-06 58.1 5.1 35 146-180 4-38 (396)
462 KOG0022 Alcohol dehydrogenase, 91.7 0.74 1.6E-05 50.2 8.7 74 147-220 194-280 (375)
463 TIGR03366 HpnZ_proposed putati 91.7 1 2.2E-05 49.7 10.3 45 147-191 122-167 (280)
464 PRK12936 3-ketoacyl-(acyl-carr 91.6 1.2 2.6E-05 47.5 10.6 88 142-242 2-90 (245)
465 PLN02616 tetrahydrofolate dehy 91.6 0.51 1.1E-05 53.0 7.7 74 146-242 231-305 (364)
466 PRK09880 L-idonate 5-dehydroge 91.6 1.1 2.4E-05 50.8 10.9 45 147-191 171-216 (343)
467 PRK12550 shikimate 5-dehydroge 91.5 0.46 9.9E-06 52.1 7.2 93 148-244 124-220 (272)
468 TIGR03466 HpnA hopanoid-associ 91.5 0.21 4.5E-06 56.1 4.8 64 147-210 1-72 (328)
469 PRK07825 short chain dehydroge 91.4 1.2 2.6E-05 48.6 10.6 82 146-241 5-87 (273)
470 PRK12814 putative NADPH-depend 91.4 0.55 1.2E-05 58.4 8.5 35 146-180 193-227 (652)
471 PRK11908 NAD-dependent epimera 91.3 0.41 8.9E-06 54.5 6.9 39 147-185 2-42 (347)
472 PRK07890 short chain dehydroge 91.3 1.1 2.5E-05 48.2 10.1 86 146-241 5-91 (258)
473 PRK12409 D-amino acid dehydrog 91.2 0.25 5.4E-06 57.7 5.1 33 147-179 2-34 (410)
474 PRK12829 short chain dehydroge 91.1 1.2 2.6E-05 48.2 10.0 43 145-187 10-53 (264)
475 PRK09414 glutamate dehydrogena 91.1 0.96 2.1E-05 52.8 9.6 110 145-264 231-364 (445)
476 PRK06153 hypothetical protein; 91.1 0.75 1.6E-05 52.3 8.4 33 147-179 177-210 (393)
477 PRK14185 bifunctional 5,10-met 91.0 0.7 1.5E-05 50.8 7.9 75 145-242 156-235 (293)
478 PRK07494 2-octaprenyl-6-methox 91.0 0.26 5.5E-06 57.1 4.9 38 143-180 4-41 (388)
479 TIGR01019 sucCoAalpha succinyl 90.9 1.8 3.9E-05 47.8 11.0 109 146-264 6-118 (286)
480 PRK03815 murD UDP-N-acetylmura 90.9 1 2.2E-05 52.4 9.8 59 147-209 1-61 (401)
481 COG0493 GltD NADPH-dependent g 90.9 0.66 1.4E-05 54.6 8.1 68 147-214 124-220 (457)
482 PRK04663 murD UDP-N-acetylmura 90.8 1 2.2E-05 53.3 9.7 109 147-256 8-132 (438)
483 PLN02477 glutamate dehydrogena 90.7 1 2.2E-05 52.2 9.2 106 146-264 206-331 (410)
484 PF13450 NAD_binding_8: NAD(P) 90.7 0.37 8E-06 40.9 4.3 30 151-180 1-30 (68)
485 PLN02695 GDP-D-mannose-3',5'-e 90.7 0.26 5.6E-06 56.8 4.6 36 144-179 19-55 (370)
486 PRK05693 short chain dehydroge 90.7 1.7 3.8E-05 47.4 11.0 80 147-242 2-82 (274)
487 PRK06124 gluconate 5-dehydroge 90.7 1.6 3.4E-05 47.2 10.4 87 145-241 10-97 (256)
488 PRK06194 hypothetical protein; 90.6 1.3 2.8E-05 48.8 9.9 42 145-186 5-47 (287)
489 PRK06185 hypothetical protein; 90.6 0.28 6.1E-06 57.2 4.8 39 141-179 1-39 (407)
490 PRK14168 bifunctional 5,10-met 90.6 0.8 1.7E-05 50.5 7.9 75 145-242 160-239 (297)
491 TIGR03736 PRTRC_ThiF PRTRC sys 90.5 1.1 2.3E-05 48.2 8.6 41 146-186 11-62 (244)
492 PRK06847 hypothetical protein; 90.5 0.32 6.9E-06 56.0 5.0 36 145-180 3-38 (375)
493 PRK14851 hypothetical protein; 90.4 0.97 2.1E-05 55.8 9.3 114 147-269 44-169 (679)
494 KOG0399 Glutamate synthase [Am 90.4 0.65 1.4E-05 57.9 7.5 68 146-213 1785-1881(2142)
495 PLN02427 UDP-apiose/xylose syn 90.4 0.57 1.2E-05 54.3 7.0 42 145-186 13-56 (386)
496 PRK14167 bifunctional 5,10-met 90.4 0.86 1.9E-05 50.2 7.9 76 145-243 156-236 (297)
497 PRK07576 short chain dehydroge 90.4 1.7 3.6E-05 47.4 10.3 41 145-185 8-49 (264)
498 PRK14174 bifunctional 5,10-met 90.3 0.79 1.7E-05 50.5 7.6 75 145-242 158-237 (295)
499 PLN02214 cinnamoyl-CoA reducta 90.3 0.86 1.9E-05 51.9 8.3 36 146-181 10-46 (342)
500 PRK01368 murD UDP-N-acetylmura 90.3 1.5 3.2E-05 52.0 10.5 65 145-210 5-71 (454)
No 1
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.8e-167 Score=1589.00 Aligned_cols=983 Identities=79% Similarity=1.200 Sum_probs=916.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||+++++++++++||+.||+++|||++.++++|+.|+++||+++++.++|++++|.| |++++++||+++++++|++.
T Consensus 178 L~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~ 257 (1378)
T PLN02858 178 MVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSL 257 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHH
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGF 159 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~ 159 (988)
|+++|+++++++.|+.+.+.|+|++|++++++++++..|....++.+.+-|.+++..+++.|..+..++|||||+|+||.
T Consensus 258 g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~MG~ 337 (1378)
T PLN02858 258 PFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGAMGF 337 (1378)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988788999999999999
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEec
Q 001973 160 GMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS 239 (988)
Q Consensus 160 ~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~ 239 (988)
+||.+|+++||+|++|||++++.+.+.+.|+..++++.+++++||+||+|||++.++++++++..++.+.+.+|++|||+
T Consensus 338 ~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ 417 (1378)
T PLN02858 338 GMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLS 417 (1378)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEEC
Confidence 99999999999999999999999999999988899999999999999999999999999998877888889999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH
Q 001973 240 STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319 (988)
Q Consensus 240 st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K 319 (988)
||++|.+++++++.+.+.++|++|+|+||+|++..+..|++++|+||+++.+++++++|+.++.++++++|++|+|+.+|
T Consensus 418 STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~K 497 (1378)
T PLN02858 418 STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVK 497 (1378)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHH
Confidence 99999999999999987567899999999999999999999999999999999999999999999887678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhC
Q 001973 320 MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQ 399 (988)
Q Consensus 320 l~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~ 399 (988)
+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||++.++.++++.++|.++|+++.+.||++++.+++++.
T Consensus 498 L~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~ 577 (1378)
T PLN02858 498 MVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSR 577 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchhhhhHhhhcc-Cc
Q 001973 400 RVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKN-AK 478 (988)
Q Consensus 400 gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 478 (988)
|+++|+..++.++|+.+.+.|+|++|++++++++++..|++++++.|++..++.|+.++++|+.++.+++......+ .+
T Consensus 578 g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1378)
T PLN02858 578 KIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLTGVKVEGRLPVLKKEDVLTSLPAEWPEDPIDDICHRLNMGNSK 657 (1378)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCCCCCCCCCcCcchhhccCCCcCccchhhhHHHhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776663333 35
Q ss_pred EEEEecCCCCcccccccceeEeecChhhHHHhhccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 001973 479 TLIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTASNSVENTEYTVV 558 (988)
Q Consensus 479 ~~~iiaDD~TGa~~~~g~~~~~~~~~~~~~~~~~~~~dvvvi~T~SR~l~~~~A~~~v~~~~~~l~~~~~~~~~~~~~i~ 558 (988)
+|+|+|||+||+|.++|+.+++.||++++...+.+..++++|+||||+++|++||++|++++++++.+..+....+|+||
T Consensus 658 ~~vvldddptg~qtv~~~~~l~~wd~~~l~~~~~~~~~v~~i~TnSRal~~~eA~~~v~ei~~~l~~a~~~~~~~~~~i~ 737 (1378)
T PLN02858 658 TLVVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASELIKDICRNLCAAAKSVGNVDYTIV 737 (1378)
T ss_pred eEEEECCCCCCCeeecccHhhhcCCHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999887544223456799
Q ss_pred eccCCCCCCCchhHHHHHHhhhCCCCEEEEeccccCCCeEEECcEEEEecCCceeecCCCccccCCCCCCCCCcHHHHHH
Q 001973 559 LRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVE 638 (988)
Q Consensus 559 kkiDSTLRGnig~Ei~a~~~~~~~~~~~~v~PAfP~~GR~t~~G~~~v~g~~~~~pl~et~~a~Dp~~Pv~~s~l~~~l~ 638 (988)
||+|||||||||+|++++++++|+++.++||||||++||||+||+|||||++.++|++||+||+||+||+++|+|++||+
T Consensus 738 kR~DSTLRGn~~~E~da~~~~~g~~d~~i~~PAFp~~GR~Tv~Gvhyv~~~~~~vPv~eTefA~Dp~~p~~~S~l~~~l~ 817 (1378)
T PLN02858 738 LRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTINDIHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVE 817 (1378)
T ss_pred eccccccCCCCchhHHHHHHhhCcCcEEEEeccccCCCcEEECCEEEEccCCCcccccCCccccCCCCCCccccHHHHHH
Confidence 99999999999999999999999878999999999999999999999999889999999999999999999999999999
Q ss_pred hHcCCCCCCCceeEEehHHHhccChhHHHHHHhcccCCCeEEEecCChhHHHHHHHHHHHHHHcCCcEEEEcchHHHHHH
Q 001973 639 EKTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSAR 718 (988)
Q Consensus 639 ~q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~~~~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~vg~agl~~~L 718 (988)
+||++++++++|.+|++++||.++.+.+.++|..+.+++++||||+|++||+.||.++.+++..+++++|+|+|+|+.++
T Consensus 818 eqt~g~~~~~~V~~i~l~~lr~g~~~~~~~~L~~~~~~~~vVvDA~t~~DL~~ia~a~~~~~~~gk~~l~~~aA~~~~~~ 897 (1378)
T PLN02858 818 EKTKGRISANSVQSISIQLLRKGGPDAVCEHLCSLKKGSTCIVNAASERDMAVFAAGMIQAELKGKRFLCRTAASFVSAR 897 (1378)
T ss_pred HHcCCCCcccceeEEeHHHHhccCHHHHHHHHHhccCCCEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEECcHHHHHHH
Confidence 99999999999999999999997678899999877778899999999999999999997755568999999999999998
Q ss_pred hcccccCCCCccccccccCCCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHHHHHHHHHHH
Q 001973 719 IGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEIIRAAEMVDV 798 (988)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 798 (988)
......+|..|.........+|+|+||||++++|++|+++|+++.+..+..|++|++++++..++.++++++++++++.+
T Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~LvvvGS~~~~T~~Ql~~L~~~~~~~~~~i~v~v~~l~~~~~~~~~~~~~~~~~~~~~ 977 (1378)
T PLN02858 898 IGIIPKPPVLPKDLESNKESSGGLIVVGSYVPKTTKQVEELKSQCGQSLRSIEVSVEKVAMKSSEVRDEEISRAVEMADA 977 (1378)
T ss_pred hcCCCCCCCChHHhcccCCCCCEEEEEeCCcHhHHHHHHHHHhCcCCCeeEEEEeHHHHhhccchhHHHHHHHHHHHHHH
Confidence 65433344444444444456789999999999999999999987651146899999999853223456788999999999
Q ss_pred HHhcCCcEEEEecCcccccCCccchHHHHHHHHHHHHHHHHHhhcCcceeeeccccchHHHHHhhccccceEEecccccC
Q 001973 799 FLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRRITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAG 878 (988)
Q Consensus 799 ~l~~~~~~vi~t~~~~~~~~~~~~~~~~~~~i~~~l~~i~~~~~~~~~~li~tGGdTs~~v~~~~Lg~~~~~~~~ei~pG 878 (988)
.+++|++++|+|++......+...+.+++.+|++.|+++++++..++++||+||||||.+++++.||++++++++||+||
T Consensus 978 ~l~~g~~~vv~Tsr~~~~~~~~~~~~~~~~~Is~~L~~iv~~l~~~~~~li~kGGdTs~~vl~~~L~~~~~~l~gei~pG 1057 (1378)
T PLN02858 978 FLRAGKDTLIMTSRELITGKTPSESLDINSKVSSALVEIVRRISTRPRYILAKGGITSSDLATKALEARRAKVVGQALAG 1057 (1378)
T ss_pred HHHcCCCEEEEeChhhccCCCHHHHHHHHHHHHHHHHHHHHhccccCCEEEeCCchhHHHHHHhhcCcceeeeecccccC
Confidence 99999999999998766566667789999999999999999998889999999999999997799999999999999999
Q ss_pred CcEEEcCCCCCCCCCcEEecCCCCCChhHHHHHHHHhccCcccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHH
Q 001973 879 VPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEE 958 (988)
Q Consensus 879 vp~~~~~~~g~~~gl~ivtK~G~fG~~~~l~~~~~~l~~~~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~ 958 (988)
||++++.+++.++|+|||||+|+||++++|.+++++|.++-+ |||++||++|++++||||||||+|+|+++|+++|||+
T Consensus 1058 vp~~~~~~~~~~~glpvVtk~G~~G~~~tL~~~~~~l~~~~~-v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~ 1136 (1378)
T PLN02858 1058 VPLWKLGPESRHPGVPYIVFPGNVGDSTALAEVVKSWARPAR-SSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEA 1136 (1378)
T ss_pred CceEEecCCCCCCCCcEEEeCCcCCChHHHHHHHHHhcCcCC-ccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence 999999645678999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccchhcccCHHHHHhhh
Q 001973 959 ERSPAILQVRSTCFKVQYITLVTSSI 984 (988)
Q Consensus 959 ~~~Pvil~~~~~~~~~~~~~~~~~~~ 984 (988)
+++|||||+++++++|.|.+++.+++
T Consensus 1137 ~~sPvIl~~~~~~~~~~~~~~~~~~~ 1162 (1378)
T PLN02858 1137 EKSPAILQVHPGALKQGGIPLVSCCI 1162 (1378)
T ss_pred hCCCEEEECCccHHhhcCHHHHHHHH
Confidence 99999999999999999988555544
No 2
>COG3395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.9e-73 Score=619.99 Aligned_cols=400 Identities=25% Similarity=0.341 Sum_probs=351.2
Q ss_pred cEEEEecCCCCccccc------ccceeEeecChhhHHHhhccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccccC
Q 001973 478 KTLIVLDDDPTGTQTV------HGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTASNSVE 551 (988)
Q Consensus 478 ~~~~iiaDD~TGa~~~------~g~~~~~~~~~~~~~~~~~~~~dvvvi~T~SR~l~~~~A~~~v~~~~~~l~~~~~~~~ 551 (988)
++++||||||||++++ .|+++.+.++.+... ...++|+++|+|+||++|++||++++.++++||+..+..
T Consensus 1 ~~l~viADD~TGatdvas~l~~~G~~t~~~~~v~~~~--~~~~~davvi~~~sRs~~~~eA~~~~~~A~~~Lk~~~~~-- 76 (413)
T COG3395 1 MKLGVIADDLTGATDVASFLVKNGLRTVLVLDVPTVR--LFDEVDAVVIALKSRSLPADEAISQVLAALSWLKEAGAQ-- 76 (413)
T ss_pred CceEEeecccccchHHHHHHHhcCCceeeeecCCccc--ccccCCEEEEecccccCCHHHHHHHHHHHHHHHHhcCcc--
Confidence 3699999999999998 788888888876433 557889999999999999999999999999999999854
Q ss_pred CCeEEEEeccCCCCCCCchhHHHHHHhhhCCCCEEEEeccccCCCeEEECcEEEEecCCceeecCCCccccCCCCCCCCC
Q 001973 552 NTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSS 631 (988)
Q Consensus 552 ~~~~~i~kkiDSTLRGnig~Ei~a~~~~~~~~~~~~v~PAfP~~GR~t~~G~~~v~g~~~~~pl~et~~a~Dp~~Pv~~s 631 (988)
++|+||||||||+|||||.|++|+++++| .++++||||||.+||||.+||+|||| +||+||+|.+||+|||++|
T Consensus 77 -~~~kvcstfDST~~GNIG~~~dal~~alg-~~~avv~PA~P~~gRtv~~gyl~v~G----vlv~es~~~~~PvtPm~~s 150 (413)
T COG3395 77 -VHYKVCSTFDSTLRGNIGPETDALLDALG-FSIAVVVPALPLNGRTVFGGYLFVNG----VLVDESGMARDPVTPMKDS 150 (413)
T ss_pred -ceEEEEecccCCCCCCccHHHHHHHHhcC-CCceEEecCccCCCeeEEeeEEEEcC----EEcccCccccCCCCccchh
Confidence 58999999999999999999999999999 58999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHhHcCCCCCCCceeEEehHHHhccChhHHHHHHhcccC--CCeEEEecCChhHHHHHHHHHHHHHHcCCcEEEE
Q 001973 632 NLREWVEEKTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQK--GSTCIVNAASERDIAVFAAGMIQAELKGKSFLCR 709 (988)
Q Consensus 632 ~l~~~l~~q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~~--~~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~v 709 (988)
||++++++|++++ ++++++.++++ +.+.+.++|.++.. .+++|+||.++.|++.++++.. ..+ |.+
T Consensus 151 ~l~r~v~~qt~~~-----~g~v~l~~~~~-g~~~~~~~L~~l~~~g~~~~v~da~~~~d~~~~~~~~a-----~~~-lv~ 218 (413)
T COG3395 151 YLPRHVAKQTKGK-----IGLVDLADVRQ-GADAVRAALADLQAEGCRVAVVDAVDNRDLEILAKAAA-----EQP-LVT 218 (413)
T ss_pred hHHHHHHHHhcCC-----cccccHHHHhh-hHHHHHHHHHHHHhcCCcEEeeecccchhHHHHHHHHh-----cCC-eee
Confidence 9999999999985 99999999999 67889999988754 3799999999999999999883 344 669
Q ss_pred cchHHHHHHhcccccCCCCccccccccCCCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHH
Q 001973 710 TAASFVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEI 789 (988)
Q Consensus 710 g~agl~~~L~~~~~~~~~~~~~~~~~~~~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~ 789 (988)
|++|++.+|++.+..... ......++.+|++||+|||+++|.+|+++++++.. + .++|++++++ ..+.++
T Consensus 219 g~sGl~~aLa~~~~~~~~--~~~~~~P~~~~~~Vv~GS~s~~T~~Qv~~~~~~~~--~--~~ldv~~~~~----~~~~~i 288 (413)
T COG3395 219 GASGLATALARRWPQSAG--AAAAGAPPKGRAAVVSGSVSPMTNKQVDALLQHAP--V--FELDVERLLS----DAEAYI 288 (413)
T ss_pred cCchHHHHHHHHhccccc--cccccCCCCCceEEEEecccHHHHHHHHHHHHhCC--c--ccccHHHHhh----hhHHHH
Confidence 999999999876543311 11122344789999999999999999999998844 3 4999999984 257899
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCcccc--c-CCccchHHHHHHHHHHHHHHHHHhhc-CcceeeeccccchHHHHHhhcc
Q 001973 790 IRAAEMVDVFLQARKDTLLITSRVLIT--G-KTPSESLEINLKVSSAMVEIVRRITT-RPRYILAKGGITSSDIATKALE 865 (988)
Q Consensus 790 ~~~~~~~~~~l~~~~~~vi~t~~~~~~--~-~~~~~~~~~~~~i~~~l~~i~~~~~~-~~~~li~tGGdTs~~v~~~~Lg 865 (988)
+++.+|+.+.+.+++.++|||+..... . ....+..+ +.+|++.|+++++++++ .++++|++|||||++|+ .+||
T Consensus 289 e~~~~~v~a~~~~~~~~lvyts~~~~~~k~iq~~~g~~~-~~~v~~~l~~la~~l~~~~v~~livaGGeTS~~Vl-~~Lg 366 (413)
T COG3395 289 ERAVAWVLASLSHGRAPLVYTSRGPDAIKAIQARLGVGQ-SHAVEALLGDLARRLVARGVRRLIVAGGETSGAVL-GQLG 366 (413)
T ss_pred HHHHHHHHhhcccCCceeEEecCChHHHHHHHhhcCcch-HHHHHHHHHHHHHHHHHhhhceEEecCCcchHHHH-HhhC
Confidence 999999999999999999999986432 1 12233455 89999999999999998 69999999999999997 7899
Q ss_pred ccceEEecccccCCcEEEcCCCCCCCCCcEEecCCCCCChhHHHHHHHHh
Q 001973 866 AKRAKVVGQALAGVPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSW 915 (988)
Q Consensus 866 ~~~~~~~~ei~pGvp~~~~~~~g~~~gl~ivtK~G~fG~~~~l~~~~~~l 915 (988)
+.++++.+||.||+||++.. ++ +|++++|+||||+|++|..+.+++
T Consensus 367 ~~~~ri~~~i~Pg~p~~~a~-g~---~l~l~lKsGnfG~e~~~~~a~~~~ 412 (413)
T COG3395 367 ATGFRIGGEIAPGVPLVRAI-GR---DLPLALKSGNFGTEDTLADALDML 412 (413)
T ss_pred cceEeecCCcCCCCceEeec-CC---CceEEEeCCCCCChhHHHHHHHhh
Confidence 99999999999999999987 32 399999999999999999999876
No 3
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=7.7e-52 Score=441.99 Aligned_cols=285 Identities=36% Similarity=0.610 Sum_probs=277.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+||+|||+|.||.+||.+|.++||+|++|||++++ .+.+.+.|+..+.++.|+++++|+||+|||++.++++|++++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 48999999999999999999999999999999999 67777779999999999999999999999999999999999999
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.+++|++|||+||++|..++++++.+.+ +|.+|+|+||+|++..+..|++++|+||+++.|++++|+|+.+|+++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~--~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i 158 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAA--KGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNI 158 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCce
Confidence 9999999999999999999999999999988 68999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHH
Q 001973 306 YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIF 385 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~ 385 (988)
++ +|+.|+++.+|++||++.+.++.+++|++.++++.|+|++.+.++++.+++.||.++++.+++++++|.|+|+++.+
T Consensus 159 ~~-~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~ 237 (286)
T COG2084 159 VH-VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLM 237 (286)
T ss_pred EE-ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHH
Confidence 99 58889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~ 434 (988)
.||++++.+++++.|+++|+...+.++|+.+.+.|+|++|++++++.++
T Consensus 238 ~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 238 LKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998874
No 4
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=3.2e-50 Score=417.23 Aligned_cols=291 Identities=38% Similarity=0.635 Sum_probs=283.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|+||.+|+.+|.++||.|++|||+.++.++|.+.|+.++++|.|+++.||+||+|||++.++++++++..+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~G 114 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSG 114 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCEE-EecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 226 AVSALSSGASI-ILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 226 i~~~l~~g~iv-Id~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
+++.++++... ||+||++|++++++++.+.. ++..|+|+||+|+...+++|+|++|+|||++.+++..++|+.+|++
T Consensus 115 vl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~--~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 115 VLSGIRPGKKATVDMSTIDPDTSLEIAKAISN--KGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKN 192 (327)
T ss_pred ceeeccCCCceEEeccccCHHHHHHHHHHHHh--CCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcce
Confidence 99999998777 99999999999999999987 6899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhH
Q 001973 305 LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDI 384 (988)
Q Consensus 305 v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~ 384 (988)
+++ +|..|.++.+|+++|++.+..+.+++|++.|+++.|+|+.+++++++.+.+.|+++.++.|++..++|.|+|.++.
T Consensus 193 ~~~-~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~ 271 (327)
T KOG0409|consen 193 VVF-LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKL 271 (327)
T ss_pred EEE-ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHH
Confidence 988 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCc
Q 001973 385 FVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439 (988)
Q Consensus 385 ~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~ 439 (988)
+.||++++.+.+.+.+.|+|+...++++|+...+.|+|+.|++++++.++...+.
T Consensus 272 m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 272 MVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999987664
No 5
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=8.9e-45 Score=399.52 Aligned_cols=291 Identities=25% Similarity=0.419 Sum_probs=276.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||||||+|+||.+||++|.++||+|++|||++. .+.+.+.|+..++++.++++++|+||+|||++.+++++++++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 4899999999999999999999999999999985 577778898888999999999999999999999999999877778
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+.+|++|||+||++|.+++++++.+.+ +|+.|+|+||+|++..+..|++.+++||+++.+++++|+|+.++++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~--~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~ 157 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNE--LGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNIT 157 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcE
Confidence 888889999999999999999999999987 688999999999999999999999999999999999999999999998
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 386 (988)
++ |+.|+++.+|+++|++...++.+++|++.++++.|+|++++++++..+.+.||+++++.+++.+++|.++|+++.+.
T Consensus 158 ~~-G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~ 236 (292)
T PRK15059 158 LV-GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQ 236 (292)
T ss_pred Ee-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHH
Confidence 84 88999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccc
Q 001973 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441 (988)
Q Consensus 387 kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~ 441 (988)
||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|.++
T Consensus 237 KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~~~~ 291 (292)
T PRK15059 237 KDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKL 291 (292)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcCCcC
Confidence 9999999999999999999999999999999999999999999999998777553
No 6
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-43 Score=391.63 Aligned_cols=290 Identities=30% Similarity=0.454 Sum_probs=274.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
+||+|||+|.||.+||.+|+++||+|++|||++++.+++.+.|+..++++.++++++|+||+|+|++.+++.++++.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 48999999999999999999999999999999999999999999889999999999999999999998899999877778
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+++++++||+||+.|.+++++++.+.+ +|+.|+|+||+|++..+..|++++++||+++.+++++++|+.++.+++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~--~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQA--KGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELI 159 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeE
Confidence 888899999999999999999999999987 679999999999999999999999999999999999999999999998
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-cccCCCCCCCchhhHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-HMLDNDYTPYSALDIF 385 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~~~~l~~~ 385 (988)
+ +|+.|+++.+|+++|++...++.+++|++.++++.|+|++.+++++..+...++.+..+.+ ++..++|.++|+++.+
T Consensus 160 ~-~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 238 (296)
T PRK15461 160 N-AGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLA 238 (296)
T ss_pred e-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHH
Confidence 8 6899999999999999999999999999999999999999999999988777777766655 7889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCc
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~ 439 (988)
.||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|+
T Consensus 239 ~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 239 HKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred HhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999887765
No 7
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3.8e-42 Score=440.48 Aligned_cols=296 Identities=39% Similarity=0.691 Sum_probs=285.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.|+..++|+.|++++||+||+|||++.++++|++++++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.+.+|++|||+||+.|.+++++++.+.+++.++.|+|+||+|++..+..|++++|+||+++.+++++++|+.+|+++
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 99999999999999999999999999999884333899999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHH
Q 001973 306 YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIF 385 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~ 385 (988)
++++|+.|+|+.+|+++|++.+.++.+++|++.++++.|+|++.++++++.+++.||++.++.++++.++|.++|+++.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~ 243 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVL 243 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHH
Confidence 87679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccc
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~ 441 (988)
.||++++.+++++.|+++|+...+.++|+.+.+.|+|++|++++++++++.+|++.
T Consensus 244 ~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~ 299 (1378)
T PLN02858 244 VQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNI 299 (1378)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999888753
No 8
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=2.3e-41 Score=373.60 Aligned_cols=280 Identities=32% Similarity=0.513 Sum_probs=265.1
Q ss_pred EEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhC
Q 001973 151 FIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSAL 230 (988)
Q Consensus 151 iIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l 230 (988)
|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.+++.++++++++.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999999999999998899999999999999999999999999998877888889
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeC
Q 001973 231 SSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKG 310 (988)
Q Consensus 231 ~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g 310 (988)
.+++++||+||+.|.+++++++.+.+ +|++|+|+||+|++..+..|++.+|+||+++.+++++++|+.+++++++ +|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~--~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~-~g 157 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAA--HGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVH-CG 157 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEe-eC
Confidence 99999999999999999999999987 6899999999999999999999999999999999999999999999988 58
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-------cccCCCCCCCchhh
Q 001973 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-------HMLDNDYTPYSALD 383 (988)
Q Consensus 311 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~~~l~ 383 (988)
+.|.++.+|+++|++.+.++.+++|++.++++.|+|++++.+++..+++.||.+..+.+ .+..++|.++|+++
T Consensus 158 ~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 237 (288)
T TIGR01692 158 DHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTA 237 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchH
Confidence 89999999999999999999999999999999999999999999999999998776554 23668999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 001973 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 384 ~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
.+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++
T Consensus 238 ~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 238 LMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
No 9
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2.2e-40 Score=368.14 Aligned_cols=291 Identities=26% Similarity=0.482 Sum_probs=276.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||||||+|.||..+|.+|+++|++|++|||++++.+++.+.|...++++.+++++||+||+|+|++..++.++++.+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 58999999999999999999999999999999999999998898888999999999999999999999999998766678
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.++++++|||+||+.|.+++++.+.+.+ ++++|+++|+++++..+..+++.+++||+++.+++++++|+.++.+++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~--~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKA--KGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHH--cCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence 888899999999999999999999999987 578999999999999999999999999999999999999999999998
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 386 (988)
+ +|+.|+|+.+|+++|++.+.++.+++|++.+|++.|+|++++.+++..+.+.|+.++.+.+++..++|.++|+++.+.
T Consensus 161 ~-~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~ 239 (296)
T PRK11559 161 H-TGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 239 (296)
T ss_pred E-eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHH
Confidence 8 588999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 387 kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|++
T Consensus 240 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 293 (296)
T PRK11559 240 KDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKVE 293 (296)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999877753
No 10
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=2.9e-40 Score=366.02 Aligned_cols=290 Identities=25% Similarity=0.433 Sum_probs=274.9
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAV 227 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~ 227 (988)
||||||+|.||.+||.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++..++.++++..++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 59999999999999999999999999999999999999999988888999999999999999999988999987666677
Q ss_pred hhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 001973 228 SALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 228 ~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~ 307 (988)
+.++++++|||+||..|.+++++.+.+.+ ++++|+++|++|++..+..+++.+++||+++.+++++++|+.+++++++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~--~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~ 158 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKE--KGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVL 158 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEE
Confidence 78889999999999999999999999987 5899999999999999999999999999999999999999999999988
Q ss_pred EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHH
Q 001973 308 IKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387 (988)
Q Consensus 308 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~k 387 (988)
.|+.|.++.+|+++|++...++.+++|++.++++.|+|++++.+++..+.+.|+++..+.+++.+++|.++|+++++.|
T Consensus 159 -~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~K 237 (291)
T TIGR01505 159 -VGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQK 237 (291)
T ss_pred -eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHH
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 388 Dl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
|++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|.+
T Consensus 238 Dl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~~ 290 (291)
T TIGR01505 238 DLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANHK 290 (291)
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999877654
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=3.9e-37 Score=355.62 Aligned_cols=268 Identities=19% Similarity=0.233 Sum_probs=245.5
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----CCc---ccCCHHHHhcc---CcEEEEEcCCh
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----GGL---IANSPAEAAKD---VGVLVIMVTNE 213 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G~~---~~~s~~e~~~~---aDvV~l~vp~~ 213 (988)
.++++|||||+|.||.+||.+|+++||+|++|||++++++.+.+. |+. .+++++|+++. +|+||+|||++
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 345789999999999999999999999999999999999998874 543 67899999986 99999999999
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKS 293 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~ 293 (988)
.++++|+ +++.+.+.+|++|||+||+.|.+++++++.+.+ +|++|+++||+|++..+..|+ ++|+||+++++++
T Consensus 84 ~aV~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~--~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~ 157 (493)
T PLN02350 84 APVDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAE--KGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKN 157 (493)
T ss_pred HHHHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHH
Confidence 9999999 678999999999999999999999999999987 689999999999999999999 9999999999999
Q ss_pred HHHHHHhcCCe------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHhcCCCccc
Q 001973 294 TGSVLSALSEK------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNI---ITDSGGSSWM 363 (988)
Q Consensus 294 ~~~ll~~~g~~------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~---l~~~~~~s~~ 363 (988)
++|+|+.++.+ ++| +|+.|+|+.+|+++|.+.+.++++++|++.++++ .|+|++++.++ ++.+...|+.
T Consensus 158 v~pvL~~ia~k~~~~~~v~~-vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~l 236 (493)
T PLN02350 158 IEDILEKVAAQVDDGPCVTY-IGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFL 236 (493)
T ss_pred HHHHHHHHhhhcCCCCcEEE-eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchH
Confidence 99999999954 777 5899999999999999999999999999999999 59999999998 5677889999
Q ss_pred cccccccccCCC-CCCCchhhHHHHHHH------HHHHHHHhCCCCchH-HHHHHHHHHHHHH
Q 001973 364 FENRVPHMLDND-YTPYSALDIFVKDMG------IIARECLSQRVPLHI-STIAHQLFLAGSA 418 (988)
Q Consensus 364 ~~~~~~~~~~~~-~~~~~~l~~~~kDl~------~~~~~a~~~gi~~pi-~~a~~~~~~~a~~ 418 (988)
++...+.+..++ |.++|.++.+.||++ +..+.+.+.|+|+|+ ..++...+....+
T Consensus 237 lei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 237 IEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 998888877664 888899999999999 999999999999999 7777777776654
No 12
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=7.6e-37 Score=339.06 Aligned_cols=279 Identities=20% Similarity=0.263 Sum_probs=256.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhcc---CcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD---VGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|+|||||+|.||.+||.+|.++|++|++|||++++.+.+.+.|+..++++++++++ +|+||+|+|++..+++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 48999999999999999999999999999999999999998899889999998876 699999999998899998
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.+++|++|||+||+.|.+++++++.+.+ +|++|+|+||+|++..+..|+ ++++||+++.+++++++|+.++.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE--RGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAP 154 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHH--cCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcC
Confidence 577888889999999999999999999999887 579999999999999999998 89999999999999999999997
Q ss_pred ---eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCccccccccccccCCCCC
Q 001973 304 ---KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLG--LNTRVLFNIITDSG-GSSWMFENRVPHMLDNDYT 377 (988)
Q Consensus 304 ---~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~G--id~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~ 377 (988)
+++| +|++|.++.+|+++|++...++.+++|++.++++.| +|+++++++++.+. +.|++++.+.+.+..+++
T Consensus 155 ~~~~~~~-~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~- 232 (299)
T PRK12490 155 EGPGYVH-AGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK- 232 (299)
T ss_pred cCCcEEE-ECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC-
Confidence 6777 589999999999999999999999999999999999 99999999999654 889999888887766543
Q ss_pred CCchhhHHHHHH---HHHHHHHHhCCCCchHHHHHH-HHHHHHHHcCCCCCChHHHHHHHH
Q 001973 378 PYSALDIFVKDM---GIIARECLSQRVPLHISTIAH-QLFLAGSAAGWGRQDDAAVVKVYE 434 (988)
Q Consensus 378 ~~~~l~~~~kDl---~~~~~~a~~~gi~~pi~~a~~-~~~~~a~~~g~g~~d~~a~~~~~~ 434 (988)
.+.++.+.||+ +++++.+++.|+|+|++..+. .++....+.|.|..|.+++.+.+-
T Consensus 233 -~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 233 -LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred -hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 36789999998 799999999999999999995 899999999999999999887653
No 13
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.3e-34 Score=319.74 Aligned_cols=277 Identities=23% Similarity=0.291 Sum_probs=248.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhcc---CcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD---VGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||||||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..++++.++++. +|+||+|+|++..+++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 48999999999999999999999999999999999999999999999999998876 699999999987888888
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.+.+++++||+||+.|.+++++++.+.+ +|++|+|+||+|++..+..|. ++|+||+++.+++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE--KGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAP 154 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH--cCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcc
Confidence 577888899999999999999999999999887 689999999999999999996 89999999999999999999998
Q ss_pred ----eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHhcC-CCccccccccccccCCCC
Q 001973 304 ----KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR--LGLNTRVLFNIITDSG-GSSWMFENRVPHMLDNDY 376 (988)
Q Consensus 304 ----~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~--~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~ 376 (988)
++++ +|+.|+++.+|+++|++...++.+++|++.++++ .|+|+++++++++.+. ..|++++.+.+.+..+
T Consensus 155 ~~~~~~~~-~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~-- 231 (301)
T PRK09599 155 RAEDGYLH-AGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED-- 231 (301)
T ss_pred cccCCeEe-ECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC--
Confidence 7887 5899999999999999999999999999999999 9999999999999875 6889888887766443
Q ss_pred CCCch-hhHHHHH---HHHHHHHHHhCCCCchHHHHHHH-HHHHHHHcCCCCCChHHHHHHH
Q 001973 377 TPYSA-LDIFVKD---MGIIARECLSQRVPLHISTIAHQ-LFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 377 ~~~~~-l~~~~kD---l~~~~~~a~~~gi~~pi~~a~~~-~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+.|. +..+.|| ++++.+.+.+.|+++|.+.++.. .+....+.|++..|.+++.+++
T Consensus 232 -~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 232 -PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred -CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 2232 3344555 58999999999999999999544 5888889999999999988764
No 14
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=4.1e-32 Score=314.64 Aligned_cols=288 Identities=20% Similarity=0.227 Sum_probs=245.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------cC-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-------------------VG-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-------------------~G-~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|+||.++|.+|+++||+|++||+++++++.+++ .| ++.++++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 48999999999999999999999999999999999988774 23 45677888999999999
Q ss_pred EEEcCChHH---------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCce-EecCcccCCccccc
Q 001973 207 VIMVTNEAQ---------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK-LVDAPVSGGVKRAS 276 (988)
Q Consensus 207 ~l~vp~~~~---------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~-~ldapv~g~~~~a~ 276 (988)
|+|||++.. +..++ +++.+.++++++||++||+.|++++++.+.+.+...|.. +.++|+.++|.++.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999999853 55555 678888899999999999999999999766654312333 56788999999999
Q ss_pred CCCe--------EEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 001973 277 MGEL--------TIMAAGTEESLKSTGSVLSALS-EKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNT 347 (988)
Q Consensus 277 ~g~l--------~~~~gg~~~~~~~~~~ll~~~g-~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~ 347 (988)
.|.+ .+++|++++.+++++++|+.++ ..+++ .++++.++.+|+++|++.+.++++++|+..+|++.|+|+
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~ 236 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVL-VTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDV 236 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEE-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 8887 7899999999999999999998 56666 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccccccccCCCCCCC--chhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCC
Q 001973 348 RVLFNIITDSGGSSWMFENRVPHMLDNDYTPY--SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425 (988)
Q Consensus 348 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d 425 (988)
+++.++++.+ +++..++|.|+ |...++.||+.++.+.+++.|+++|+++++.++++...+.
T Consensus 237 ~~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~~------ 299 (411)
T TIGR03026 237 YEVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPDY------ 299 (411)
T ss_pred HHHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHHH------
Confidence 9999988753 23444556665 4678899999999999999999999999999999998887
Q ss_pred hHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 426 DAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 426 ~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+..+ ++.| ++...||..||++++|
T Consensus 300 ---~~~~~~~~l~-~~~~--------~~v~vlGlafK~~t~d 329 (411)
T TIGR03026 300 ---VVEKILDLLG-PLKG--------KTVLILGLAFKPNTDD 329 (411)
T ss_pred ---HHHHHHHHhh-cccC--------CEEEEEeeEecCCCCc
Confidence 7777776653 4555 6677888888888888
No 15
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.98 E-value=8.1e-31 Score=290.57 Aligned_cols=282 Identities=17% Similarity=0.182 Sum_probs=242.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh---ccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA---KDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~---~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.|.....++.++. ..+|+||+|+|+. .+++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 489999999999999999999999999999999999999998887778887755 4689999999998 799998
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.+++|++|||+||+.|..+.++.+.+.+ +|++|+++|++|++..+..| +.+++||+++.+++++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~--~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE--KGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAP 153 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHh--cCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcC
Confidence 688889999999999999999999999998877 68999999999999999999 589999999999999999999986
Q ss_pred ---eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCccccccccccccCCCCC
Q 001973 304 ---KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARL--GLNTRVLFNIITDSG-GSSWMFENRVPHMLDNDYT 377 (988)
Q Consensus 304 ---~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~--Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~ 377 (988)
++++ +|+.|+++.+|+++|.+...++..++|++.++++. |+|++++.++++.+. ..|++++...+.+..+++.
T Consensus 154 ~~~~~~~-~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~ 232 (298)
T TIGR00872 154 EEQGYLY-CGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDL 232 (298)
T ss_pred cCCCEEE-ECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcH
Confidence 4677 58999999999999999999999999999999998 579999999999886 6899988887777776665
Q ss_pred CCchhh-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCc
Q 001973 378 PYSALD-IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439 (988)
Q Consensus 378 ~~~~l~-~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~ 439 (988)
+.|... ...+|.++++..+.+.|+|+|.+.+.. +.+..... .+.--..+++.++...|.
T Consensus 233 ~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al--~~~~~~~~-~~~~~~~~~~~~r~~fg~ 292 (298)
T TIGR00872 233 AEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL--QSRFASRD-LDDFANKVLAALRKEFGG 292 (298)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH--HHHHHhCC-CCCcHHHHHHHHHHhhCC
Confidence 556544 466888999999999999999998843 33332221 112245577777776653
No 16
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.98 E-value=8.1e-31 Score=303.42 Aligned_cols=256 Identities=18% Similarity=0.224 Sum_probs=221.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----C--CcccCCHHHHhc---cCcEEEEEcCChHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----G--GLIANSPAEAAK---DVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G--~~~~~s~~e~~~---~aDvV~l~vp~~~~~~ 217 (988)
.+|||||+|.||++||.+|+++||+|++|||++++++++.+. | +..+++++|+++ .+|+||+|||++..++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 489999999999999999999999999999999999998864 5 346889999986 4899999999999999
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSV 297 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 297 (988)
+++ +++.+.+.+|++|||+||+.|..+.+..+.+.+ +|++|+++||+|++..+..|. ++|+||+++++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~pi 155 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDI 155 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 999 688999999999999999999999999999987 689999999999999999999 89999999999999999
Q ss_pred HHhcCCe------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccc
Q 001973 298 LSALSEK------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGA-RLGLNTRVLFNII---TDSGGSSWMFENR 367 (988)
Q Consensus 298 l~~~g~~------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~-~~Gid~~~~~~~l---~~~~~~s~~~~~~ 367 (988)
|+.++.+ +++ +|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...||+++..
T Consensus 156 L~~ia~~~~~~~~~~~-~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~ 234 (470)
T PTZ00142 156 LEKCSAKVGDSPCVTY-VGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEIT 234 (470)
T ss_pred HHHHhhhcCCCCeEEE-ECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHH
Confidence 9999987 666 589999999999999999999999999999998 7999999999888 4667888888766
Q ss_pred cccccCCCCCC-CchhhHHHH------HHHHHHHHHHhCCCCchHHHHH
Q 001973 368 VPHMLDNDYTP-YSALDIFVK------DMGIIARECLSQRVPLHISTIA 409 (988)
Q Consensus 368 ~~~~~~~~~~~-~~~l~~~~k------Dl~~~~~~a~~~gi~~pi~~a~ 409 (988)
...+...|-.. .+-++.... .-++....|-++|+|.|++.++
T Consensus 235 ~~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a 283 (470)
T PTZ00142 235 AKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAAS 283 (470)
T ss_pred HHHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHH
Confidence 55444443221 233332211 1248889999999999987644
No 17
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.97 E-value=4.4e-30 Score=297.53 Aligned_cols=254 Identities=23% Similarity=0.259 Sum_probs=220.1
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCcccCCHHHHhc---cCcEEEEEcCChHHHHHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGLIANSPAEAAK---DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~~~~s~~e~~~---~aDvV~l~vp~~~~~~~v 219 (988)
+|||||+|.||.+||.+|+++||+|++|||++++++++.+. ++..+++++++++ .+|+||+|||++..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 49999999999999999999999999999999999999876 2556778888774 689999999999999999
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHH
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLS 299 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 299 (988)
+ +++.+.+.+|++|||+||+.|..+++..+.+.+ +|++|+++||+|++..+..|. ++|+||+++++++++|+|+
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~ 154 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQ 154 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHH
Confidence 9 678899999999999999999999999888877 689999999999999999998 9999999999999999999
Q ss_pred hcCCeE------EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccccc
Q 001973 300 ALSEKL------YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGA-RLGLNTRVLFNII---TDSGGSSWMFENRVP 369 (988)
Q Consensus 300 ~~g~~v------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~-~~Gid~~~~~~~l---~~~~~~s~~~~~~~~ 369 (988)
.++.++ ++ +|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...||+++...+
T Consensus 155 ~ia~~~~~~~~~~~-~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~ 233 (467)
T TIGR00873 155 KIAAKVDGEPCCTW-IGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITAD 233 (467)
T ss_pred HHhhhcCCCCceEE-ECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHH
Confidence 999874 55 689999999999999999999999999999985 7999999999999 567788999887777
Q ss_pred cccCCCCCCCchhhHHHH------HHHHHHHHHHhCCCCchHHHH
Q 001973 370 HMLDNDYTPYSALDIFVK------DMGIIARECLSQRVPLHISTI 408 (988)
Q Consensus 370 ~~~~~~~~~~~~l~~~~k------Dl~~~~~~a~~~gi~~pi~~a 408 (988)
.+..+|-...+-++.... .-++....|-++|+|.|++.+
T Consensus 234 ~~~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~ 278 (467)
T TIGR00873 234 ILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITE 278 (467)
T ss_pred HHhccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHH
Confidence 666654322222222221 124888999999999998754
No 18
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.97 E-value=9e-30 Score=293.14 Aligned_cols=291 Identities=17% Similarity=0.217 Sum_probs=226.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc----------------ccCCHHHHhccCcEEEE
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL----------------IANSPAEAAKDVGVLVI 208 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~----------------~~~s~~e~~~~aDvV~l 208 (988)
..|||||||+|+||.+||.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34799999999999999999988 699999999999999998 3432 23444567899999999
Q ss_pred EcCCh------HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec------Cc--ccCCccc
Q 001973 209 MVTNE------AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD------AP--VSGGVKR 274 (988)
Q Consensus 209 ~vp~~------~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld------ap--v~g~~~~ 274 (988)
|||++ .+++.++.+.+++.+++++|++||++||+.|++++++.+...++..|..+.+ +| +..|...
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~ 162 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK 162 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence 99998 4557777666789999999999999999999999987555544323444444 33 3333333
Q ss_pred ccCCCeE-EEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 275 ASMGELT-IMAAGTEESLKSTGSVLSALS-EKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 275 a~~g~l~-~~~gg~~~~~~~~~~ll~~~g-~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
....++. ++.|++++..+.++++++.+. ..+++ .++++.|+.+|+++|++.++++++++|+..+|++.|+|.+++.+
T Consensus 163 ~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~-~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 163 HRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYK-AESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred ccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEE-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3333333 555667778888999999986 34555 47999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 001973 353 IITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKV 432 (988)
Q Consensus 353 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~ 432 (988)
+.+. ++.+..+.|++ +.-.|+.||..++...+++.|.+++++++++++++...+. +++.
T Consensus 242 a~~~----~~~~~~~~pG~--------vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~~~~---------v~~~ 300 (425)
T PRK15182 242 AAGS----KWNFLPFRPGL--------VGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMGNY---------VSEQ 300 (425)
T ss_pred HhcC----CCCcccCCCCc--------cccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH---------HHHH
Confidence 8543 33333333333 4445566999999999999999999999999999988776 6666
Q ss_pred HHHhh---CccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 433 YETLS---GVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 433 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+.+.. |.++.| .+...||..||++++|
T Consensus 301 ~~~~l~~~~~~~~~--------~~V~vlGlafK~~t~D 330 (425)
T PRK15182 301 LIKAMIKKGINVEG--------SSVLILGFTFKENCPD 330 (425)
T ss_pred HHHHHHhcCCCCCC--------CEEEEEEeEeCCCCCc
Confidence 66544 334556 5677888888888888
No 19
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.97 E-value=2.7e-29 Score=289.44 Aligned_cols=245 Identities=22% Similarity=0.263 Sum_probs=219.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCcccCCHHHHhcc---CcEEEEEcCChHHHHHHHccccchhh
Q 001973 157 MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGLIANSPAEAAKD---VGVLVIMVTNEAQAESVLYGDLGAVS 228 (988)
Q Consensus 157 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~vl~~~~~i~~ 228 (988)
||..||.+|+++||+|++|||++++++++.+. |+..++|++++++. +|+||+|||++..+++|+ +++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999999884 58889999999875 899999999999999999 68899
Q ss_pred hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE---
Q 001973 229 ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL--- 305 (988)
Q Consensus 229 ~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v--- 305 (988)
.+.+|++|||+||+.|..+++.++.+.+ +|++|+++||+|++..+..|. ++|+||+++++++++|+|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~--~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g 154 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAE--KGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDG 154 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999999999999999987 689999999999999999998 9999999999999999999999886
Q ss_pred ----EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccccccccCCCCC
Q 001973 306 ----YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGA-RLGLNTRVLFNII---TDSGGSSWMFENRVPHMLDNDYT 377 (988)
Q Consensus 306 ----~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~-~~Gid~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~ 377 (988)
++ +|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...|+.++...+.+..+|+.
T Consensus 155 ~~c~~~-vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~ 233 (459)
T PRK09287 155 EPCVTY-IGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEE 233 (459)
T ss_pred CCceee-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCC
Confidence 66 589999999999999999999999999999999 5899999999998 57778999999888888888874
Q ss_pred CC-chhhHHHHH------HHHHHHHHHhCCCCchHHHH
Q 001973 378 PY-SALDIFVKD------MGIIARECLSQRVPLHISTI 408 (988)
Q Consensus 378 ~~-~~l~~~~kD------l~~~~~~a~~~gi~~pi~~a 408 (988)
.+ .-++....- -++....|-++|+|.|++..
T Consensus 234 ~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~ 271 (459)
T PRK09287 234 TGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITE 271 (459)
T ss_pred CCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence 43 333332211 14888999999999998754
No 20
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.4e-29 Score=271.82 Aligned_cols=336 Identities=16% Similarity=0.147 Sum_probs=262.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------------------C-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------------------G-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------G-~~~~~s~~e~~~~aDvV 206 (988)
|||+|||.|++|...+.+|++.||+|+++|+++++++.+++. | ..++++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 699999999999999999999999999999999999998763 1 45788999999999999
Q ss_pred EEEcCChH---------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCcccc
Q 001973 207 VIMVTNEA---------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRA 275 (988)
Q Consensus 207 ~l~vp~~~---------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a 275 (988)
|+|||+|. .++.+. +.+.++++..++||..||+.|+++.++.+.+.+.. +++..+..|.+-....|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99999985 345555 78888888889999999999999999998887632 23445555555444444
Q ss_pred cCCCe---EEEEeCCHH-HHHHHHHHHHhc---CCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 001973 276 SMGEL---TIMAAGTEE-SLKSTGSVLSAL---SEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTR 348 (988)
Q Consensus 276 ~~g~l---~~~~gg~~~-~~~~~~~ll~~~---g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~ 348 (988)
....+ .+++|...+ +.+.+++++..+ ..+++++ +...++..|+++|.+.+..+.+++|+..+|++.|+|.+
T Consensus 158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t--~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~ 235 (414)
T COG1004 158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFT--DLREAELIKYAANAFLATKISFINEIANICEKVGADVK 235 (414)
T ss_pred hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEe--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 33332 277777554 577888888775 5566665 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 001973 349 VLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAA 428 (988)
Q Consensus 349 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a 428 (988)
++.+.++....-++. +++. ..||.-+|+.||++.++..++++|.+.++++++.++++.....
T Consensus 236 ~V~~gIGlD~RIG~~-------fl~a--G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~--------- 297 (414)
T COG1004 236 QVAEGIGLDPRIGNH-------FLNA--GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKDK--------- 297 (414)
T ss_pred HHHHHcCCCchhhHh-------hCCC--CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---------
Confidence 999987755433322 2222 2345667788999999999999999999999999999999887
Q ss_pred HHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchhhhhHhhhccCcEEEEe-----------cCCCCccccc-ccc
Q 001973 429 VVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTLIVL-----------DDDPTGTQTV-HGI 496 (988)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-----------aDD~TGa~~~-~g~ 496 (988)
+++.+.+..+ +.| +++..||..||++++| +|+.|.+-|+ +=|+.+.+.. +.+
T Consensus 298 ~~~~i~~~~~--l~G--------k~iavlgLafKpnTDD------~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~ 361 (414)
T COG1004 298 LAEKILNHLG--LKG--------KTIAVLGLAFKPNTDD------MRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNF 361 (414)
T ss_pred HHHHHHHhcC--CCC--------cEEEEEEEeecCCCcc------chhchHHHHHHHHHHCCCEEEEECchhhHHHHhcC
Confidence 8888888877 888 7889999999999999 6666644333 2266666555 332
Q ss_pred e-eEeecChhhHHHhhccCCcEEEEecCCC
Q 001973 497 E-VLTEWSVASLVEQFRKKPLCFFILTNSR 525 (988)
Q Consensus 497 ~-~~~~~~~~~~~~~~~~~~dvvvi~T~SR 525 (988)
. +.+.-+ .......+|+++++|+-.
T Consensus 362 ~~~~~~~~----~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 362 PDVELESD----AEEALKGADAIVINTEWD 387 (414)
T ss_pred CCceEeCC----HHHHHhhCCEEEEeccHH
Confidence 2 222222 124456789999999854
No 21
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.96 E-value=7.3e-29 Score=282.32 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=221.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh----------------cCCcc--cCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN----------------VGGLI--ANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~----------------~G~~~--~~s~~e~~~~aDvV~l 208 (988)
|||+|||+|+||.++|..|+. ||+|++||+++++++.+++ .+... +.++.+++++||+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 489999999999999988875 9999999999999999876 23333 3447788899999999
Q ss_pred EcCCh----------HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCC
Q 001973 209 MVTNE----------AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMG 278 (988)
Q Consensus 209 ~vp~~----------~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g 278 (988)
|||++ ..+++++ +++.+ +++|++||+.||++|++++++.+.+.+ .++.| +|+++..|
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~-------~PE~l~~G 146 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIF-------SPEFLREG 146 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEE-------CcccccCC
Confidence 99988 5677776 56766 688999999999999999999988764 23332 67788888
Q ss_pred Ce--------EEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 001973 279 EL--------TIMAAGTEESLKSTGSVLSA--LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTR 348 (988)
Q Consensus 279 ~l--------~~~~gg~~~~~~~~~~ll~~--~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~ 348 (988)
++ .+++|++++..+++.++|.. ++..+..+.+++++|+..|+++|++.++++++++|+..+|++.|+|.+
T Consensus 147 ~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~ 226 (388)
T PRK15057 147 KALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTR 226 (388)
T ss_pred cccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 88 89999999989999999864 555554235899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 001973 349 VLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAA 428 (988)
Q Consensus 349 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a 428 (988)
++.++++.....+..+.+ | .+||.-.|+.||...+...+ .++++++++++.++++...+.
T Consensus 227 eV~~a~~~d~ri~~~~l~--p-------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~~~~--------- 286 (388)
T PRK15057 227 QIIEGVCLDPRIGNHYNN--P-------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTRKDF--------- 286 (388)
T ss_pred HHHHHhcCCCCCCCccCC--C-------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHhHHH---------
Confidence 999998765533222111 1 23455677889999887655 567899999999999998877
Q ss_pred HHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 429 VVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+. .| ++...||..||++++|
T Consensus 287 ~~~~~~~~-----~~--------~~i~vlGlafK~~t~D 312 (388)
T PRK15057 287 IADAILSR-----KP--------QVVGIYRLIMKSGSDN 312 (388)
T ss_pred HHHHHHHh-----cC--------CEEEEEcceeCCCCCc
Confidence 77776653 33 4567888888888888
No 22
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.96 E-value=4.2e-28 Score=279.75 Aligned_cols=287 Identities=17% Similarity=0.156 Sum_probs=225.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc-CCHHHH---------------hccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA-NSPAEA---------------AKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~-~s~~e~---------------~~~aDvV~l~ 209 (988)
+|||+|||+|+||.+||.+|+++||+|++||+++++++.++....... ..+.+. .++||+||+|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 479999999999999999999999999999999999998764332211 112221 3479999999
Q ss_pred cCCh---------HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCC------------CceEecCc-
Q 001973 210 VTNE---------AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGK------------DLKLVDAP- 267 (988)
Q Consensus 210 vp~~---------~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~------------g~~~ldap- 267 (988)
||++ ..+..++ +++.+++++|++||++||+.|++++++...+.+.+. .++++++|
T Consensus 83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE 159 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE 159 (415)
T ss_pred cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence 9997 4566666 688899999999999999999999999988876321 24567777
Q ss_pred -ccCCcccccCCCeEEEEeC-CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001973 268 -VSGGVKRASMGELTIMAAG-TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGL 345 (988)
Q Consensus 268 -v~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gi 345 (988)
+..|......++...++|| +++.+++++++|+.++..+++ .+++++|+.+|+++|++.+.++++++|+..+|++.|+
T Consensus 160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~-~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~Gi 238 (415)
T PRK11064 160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECV-VTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGI 238 (415)
T ss_pred ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCee-eCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555555555666688899 999999999999999988776 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCC
Q 001973 346 NTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425 (988)
Q Consensus 346 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d 425 (988)
|++++.+.++...... ...| .+||.-.|+.||..++.. +.+.+++++++++++++.....
T Consensus 239 D~~~v~~~~~~~~ri~----~l~p-------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~~~~------ 298 (415)
T PRK11064 239 NVWELIRLANRHPRVN----ILQP-------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGKPHW------ 298 (415)
T ss_pred CHHHHHHHhccCCCcc----cCCC-------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHhHHH------
Confidence 9999999886544221 1112 134555677799987743 5677899999999999988776
Q ss_pred hHHHHHHHHHhh-------CccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 426 DAAVVKVYETLS-------GVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 426 ~~a~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+.. +.++.| ++...||..||++++|
T Consensus 299 ---v~~~~~~~l~~~l~~~~~~~~~--------~~v~vlGlafK~~t~d 336 (415)
T PRK11064 299 ---VIDQVKAAVADCLAATDKRASE--------VKIACFGLAFKPNIDD 336 (415)
T ss_pred ---HHHHHHHHHhhhhhhhccCcCC--------CEEEEEeeEECCCCcc
Confidence 666665543 334555 5677788888888877
No 23
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=99.96 E-value=1.3e-29 Score=269.74 Aligned_cols=215 Identities=26% Similarity=0.376 Sum_probs=157.9
Q ss_pred HcCCCCCCCceeEEehHHHhccChhHHHHHHhcccCC--CeEEEecCChhHHHHHHHHHHHHHHcCCcEEEEcchHHHHH
Q 001973 640 KTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQKG--STCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSA 717 (988)
Q Consensus 640 q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~~~--~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~vg~agl~~~ 717 (988)
||++ +|++|++++|++ |.+.+.+++.++.++ +++||||+|++||+.|++++++ .+.++||+||+||+.+
T Consensus 1 Qt~~-----~v~~i~l~~v~~-g~~~l~~~l~~~~~~g~~ivV~Da~t~~DL~~ia~a~~~---~~~~~l~vGsagla~a 71 (223)
T PF07005_consen 1 QTKR-----PVGLIDLEDVRR-GPEALSAALAALQAEGARIVVFDAETDEDLDAIAEALLE---LGRRVLWVGSAGLAAA 71 (223)
T ss_dssp CSSS-----EEEEE-HHHHCC--HHHHHHHHHHHHHTTECEEEE-BSSCHHHHHHHHHCTT----S---EEEESCHHHHH
T ss_pred CCCC-----ceEEEEHHHHhC-cHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHh---CCCceEEecchHHHHH
Confidence 5665 599999999998 689999999988544 8999999999999999999954 6778899999999999
Q ss_pred HhcccccCCCCccccccccC-CCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHHHHHHHHH
Q 001973 718 RIGIVAKAPILPKDLGNKIE-STGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEIIRAAEMV 796 (988)
Q Consensus 718 L~~~~~~~~~~~~~~~~~~~-~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~ 796 (988)
|++.+..++..+.......+ .+|+|+||||+|++|++|++++ ++.+ +..+++|++++++ +.+++++.+++
T Consensus 72 L~~~~~~~~~~~~~~~~~~~~~~~~Lvv~GS~s~~T~~Qi~~l-~~~~--~~~i~l~~~~l~~------~~~~~~~~~~~ 142 (223)
T PF07005_consen 72 LARALASPPEQPSQPPLPSPSRGPVLVVVGSVSPVTRRQIAYL-EQAG--VPVIELDPEQLLD------EAEIERVAAEI 142 (223)
T ss_dssp HHHHHHTT--C---CCCCS--SSEEEEEE---SHHHHHHHHHH--CCT--S-EEE--HHHCCH------CCHHHHHHHHH
T ss_pred HHhhhccCcccccccccccCCCCCeEEEEcCCCHHHHHHHHHH-HHCC--CcEEEechhhhcC------HHHHHHHHHHH
Confidence 98765543322111111111 7899999999999999999999 6667 7899999999982 56788899999
Q ss_pred HHHHhcCCcEEEEecCcccc---cCCccchHHHHHHHHHHHHHHHHHhhc--CcceeeeccccchHHHHHhhccccceEE
Q 001973 797 DVFLQARKDTLLITSRVLIT---GKTPSESLEINLKVSSAMVEIVRRITT--RPRYILAKGGITSSDIATKALEAKRAKV 871 (988)
Q Consensus 797 ~~~l~~~~~~vi~t~~~~~~---~~~~~~~~~~~~~i~~~l~~i~~~~~~--~~~~li~tGGdTs~~v~~~~Lg~~~~~~ 871 (988)
.+.+.+|++++|+|++.... .........+++.|++.|+++++++++ ++++||+||||||.+++ ++||++++++
T Consensus 143 ~~~l~~g~~~vi~t~~~~~~~~~~~~~~~~~~~s~~i~~~la~l~~~l~~~~~~~~li~tGGDTa~av~-~~Lg~~~l~i 221 (223)
T PF07005_consen 143 RAALQQGKTVVIYTSRGPEDVRDADAAGEKEGLSREIADALAELAARLLERVGISGLILTGGDTASAVL-KALGASGLEI 221 (223)
T ss_dssp HCTTTSSS--EEE-TTGHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHC-TEEEEEEESHHHHHHHH-HHCT--EEEE
T ss_pred HHHHhcCCceEEEecCCchhhhhHHHHHHhhccHHHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHH-HHhCCCeEEe
Confidence 99999999999999886421 122223456788899999999999986 69999999999999995 8899999998
Q ss_pred ec
Q 001973 872 VG 873 (988)
Q Consensus 872 ~~ 873 (988)
++
T Consensus 222 ~~ 223 (223)
T PF07005_consen 222 LG 223 (223)
T ss_dssp EE
T ss_pred cC
Confidence 74
No 24
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.96 E-value=7e-29 Score=250.47 Aligned_cols=162 Identities=38% Similarity=0.618 Sum_probs=145.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
||||||||+|.||.+||++|+++||+|++|||++++.+++.+.|++.++|+.|+++++|+||+|||++.++++++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~- 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN- 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999997666
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+++.+|++|||+||.+|.+++++++.+.+ +|++|+|+||+|++..+..|++++++||+++.+++++++|+.++.++
T Consensus 80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v 157 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTISPETSRELAERLAA--KGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNV 157 (163)
T ss_dssp HGGGS-TTEEEEE-SS--HHHHHHHHHHHHH--TTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEE
T ss_pred HhhccccceEEEecCCcchhhhhhhhhhhhh--ccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred EEEeC
Q 001973 306 YVIKG 310 (988)
Q Consensus 306 ~~~~g 310 (988)
+|+.|
T Consensus 158 ~~~~G 162 (163)
T PF03446_consen 158 YHYVG 162 (163)
T ss_dssp EEE-E
T ss_pred eeeeC
Confidence 85324
No 25
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=7.2e-27 Score=234.15 Aligned_cols=279 Identities=22% Similarity=0.294 Sum_probs=226.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc---cCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK---DVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~---~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|+||.||+|.||..|.++|.+.||+|++||+|++.++++...|++.++|+.+.+. ...+|+++||....+..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 5899999999999999999999999999999999999999999999999888764 5689999999998899999
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.|.+|.+|||-.++....+.+.++.+.+ +|++|+|+-.+|++..+..|- .+|+||+++++++++|+|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAP 154 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCc
Confidence 789999999999999999999999999999988 789999999999999999998 89999999999999999998764
Q ss_pred --eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCccccccccccccC-CCCC
Q 001973 304 --KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLG--LNTRVLFNIITDSG-GSSWMFENRVPHMLD-NDYT 377 (988)
Q Consensus 304 --~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~G--id~~~~~~~l~~~~-~~s~~~~~~~~~~~~-~~~~ 377 (988)
.-|..+|+.|+++.+||++|-+...++++++|.+.+.++.. +|.+++.++.+.++ -.||.++-....+.+ .++.
T Consensus 155 ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~ 234 (300)
T COG1023 155 GEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLD 234 (300)
T ss_pred CcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHH
Confidence 34555899999999999999999999999999999998864 67899999999987 568876533221111 0100
Q ss_pred CCchhhHHHH---HHHHHHHHHHhCCCCchHHHHH-HHHHHHHHHcCCCCCChHH-HHHHHHHhhCc
Q 001973 378 PYSALDIFVK---DMGIIARECLSQRVPLHISTIA-HQLFLAGSAAGWGRQDDAA-VVKVYETLSGV 439 (988)
Q Consensus 378 ~~~~l~~~~k---Dl~~~~~~a~~~gi~~pi~~a~-~~~~~~a~~~g~g~~d~~a-~~~~~~~~~g~ 439 (988)
.+.-... +-++.++.+-+.|+|.|++... ...|+... +..|+. ++..++...|.
T Consensus 235 ---q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~-----~d~f~~kvlaalR~~FGg 293 (300)
T COG1023 235 ---QISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQ-----DDTFAGKVLAALRNEFGG 293 (300)
T ss_pred ---HhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccc-----hhhHHHHHHHHHHHHhCC
Confidence 0000111 1247788999999999987644 33333322 233433 55556655553
No 26
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=5.7e-26 Score=256.06 Aligned_cols=275 Identities=17% Similarity=0.195 Sum_probs=222.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------C------CcccCCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------G------GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------G------~~~~~s~~e~~~~aDvV~l~v 210 (988)
.+|||+|||+|.||++||.+|+++||+|++|+|++++.+.++.. | +..++++.++++.+|+||+|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 45799999999999999999999999999999999998888764 3 345678889899999999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCC-CHHH--HHHHHHHHHh-cCCCceEecCcccCCcccccCCCeEEEEeC
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTV-SPGF--VSQLERRLQF-EGKDLKLVDAPVSGGVKRASMGELTIMAAG 286 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~-~p~~--~~~l~~~l~~-~~~g~~~ldapv~g~~~~a~~g~l~~~~gg 286 (988)
|+.. +++++ +.++++.++|+++++ .|.. .+.+++.+.+ ...++.++.+|..........+++.+++|+
T Consensus 83 ~~~~-~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~ 154 (328)
T PRK14618 83 PSKA-LRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASP 154 (328)
T ss_pred chHH-HHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeC
Confidence 9975 56665 445678899999984 6554 5677776654 112455666665544444455788899999
Q ss_pred CHHHHHHHHHHHHhcCCeEEE-------EeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 001973 287 TEESLKSTGSVLSALSEKLYV-------IKGG---------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVL 350 (988)
Q Consensus 287 ~~~~~~~~~~ll~~~g~~v~~-------~~g~---------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~ 350 (988)
+.+.+++++++|+..+.++++ ..+. .|.+..+|+.+|+..+++..++.|+..++++.|++++++
T Consensus 155 ~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~ 234 (328)
T PRK14618 155 EPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATF 234 (328)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccch
Confidence 999999999999999988863 1122 588999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCCccccccccc--cccCC---C-CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 351 FNIITD----SGGSSWMFENRVP--HMLDN---D-YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 351 ~~~l~~----~~~~s~~~~~~~~--~~~~~---~-~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
++++.. +++.|+.++++.. .+..+ + +.+.|.+..+.||++.+.+++++.|+++|+++.+++++
T Consensus 235 ~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~------- 307 (328)
T PRK14618 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA------- 307 (328)
T ss_pred hcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 999876 3688988888854 66666 3 66778999999999999999999999999999999997
Q ss_pred CCCCChHHHHHHHH
Q 001973 421 WGRQDDAAVVKVYE 434 (988)
Q Consensus 421 ~g~~d~~a~~~~~~ 434 (988)
+++.|...+++.+-
T Consensus 308 ~~~~~~~~~~~~~~ 321 (328)
T PRK14618 308 RGGWDPLAGLRSLM 321 (328)
T ss_pred hCCCCHHHHHHHHh
Confidence 34556555555443
No 27
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.93 E-value=1.4e-24 Score=251.86 Aligned_cols=292 Identities=14% Similarity=0.112 Sum_probs=228.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhcC-------------------CcccCCHHHHhccCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNVG-------------------GLIANSPAEAAKDVG 204 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G-------------------~~~~~s~~e~~~~aD 204 (988)
+|||+|||+|++|..+|..|+++| |+|++||+++++++.+++.+ ..++++..+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 379999999999999999999985 88999999999999976532 335677788899999
Q ss_pred EEEEEcCChH--------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc--CCCceEecCcc
Q 001973 205 VLVIMVTNEA--------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE--GKDLKLVDAPV 268 (988)
Q Consensus 205 vV~l~vp~~~--------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~--~~g~~~ldapv 268 (988)
++|+|||+|. .++.+. +.+.++++++++||..||+.|++++++.+.+.+. +.++++..+|.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 9999998775 345555 6788899999999999999999999999888764 33566777887
Q ss_pred cCCcccccCCC---eEEEEeCC-----HHHHHHHHHHHHhcCC-eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001973 269 SGGVKRASMGE---LTIMAAGT-----EESLKSTGSVLSALSE-KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAF 339 (988)
Q Consensus 269 ~g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l 339 (988)
+-.+..+.... -.+++||. +++.+.++.+++.+.+ ..+. ..++.+|+..|++.|.+.++++++++|+..+
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~-~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~l 236 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERII-TTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEE-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665544432 22566764 3357888999998863 2333 3699999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHH
Q 001973 340 GARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVP--LHISTIAHQLFLAGS 417 (988)
Q Consensus 340 a~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~--~pi~~a~~~~~~~a~ 417 (988)
|++.|+|..++.+.++.....++.+.+ | .+|+.-.|+.||..++...+++.|.+ +++.+++.++++...
T Consensus 237 ce~~giD~~eV~~~~~~d~rig~~~l~--P-------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~ 307 (473)
T PLN02353 237 CEATGADVSQVSHAVGKDSRIGPKFLN--A-------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQK 307 (473)
T ss_pred HHHhCCCHHHHHHHhCCCCcCCCCCCC--C-------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhH
Confidence 999999999999988765432222111 1 23455567889999999999999998 889999998888776
Q ss_pred HcCCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 418 AAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 418 ~~g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+. +++.+.+..+-++.| .+...||..||++++|
T Consensus 308 ~~---------vv~~~~~~l~~~~~~--------~~VavlGlafK~~tdD 340 (473)
T PLN02353 308 SR---------FVNRVVSSMFNTVSG--------KKIAVLGFAFKKDTGD 340 (473)
T ss_pred HH---------HHHHHHHHhhcccCC--------CEEEEEeeeecCCCCc
Confidence 65 666666554334555 5677888888888888
No 28
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.93 E-value=1.4e-24 Score=245.03 Aligned_cols=274 Identities=16% Similarity=0.183 Sum_probs=215.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.||..+|.+|+++||+|++|||++++++.+++. ++..++++.++++++|+||+|+|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 699999999999999999999999999999999999988876 345567888888999999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecC-CCCHHHHHHHHHHHHhcCC---CceEecCcccCCcccccCCCeEEEEeCCH
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSS-TVSPGFVSQLERRLQFEGK---DLKLVDAPVSGGVKRASMGELTIMAAGTE 288 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~~~~---g~~~ldapv~g~~~~a~~g~l~~~~gg~~ 288 (988)
. .+++++ +++.+.+.+++++|+++ +..|.+.+.+++.+.+... ...++.+|.......+...++.++.+++.
T Consensus 82 ~-~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 82 Q-ALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred H-HHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 5 588887 57778888899999998 7777766666666655321 23456666655444455567777888899
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 001973 289 ESLKSTGSVLSALSEKLYVIKGG-----------------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLF 351 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~~g~-----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~ 351 (988)
+.++++.++|+..+.++++. ++ .|.+..+|+.+|.+..++..+++|++.++++.|+|++++.
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~-~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~ 236 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTN-TDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFL 236 (325)
T ss_pred HHHHHHHHHhCCCCEEEEec-CCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 99999999999988776552 33 2777888999999999999999999999999999999999
Q ss_pred HHHHhc----CCCcccccccccc--ccCCC-C-----CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 352 NIITDS----GGSSWMFENRVPH--MLDND-Y-----TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 352 ~~l~~~----~~~s~~~~~~~~~--~~~~~-~-----~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
+++..+ ++.|+..+++.++ +..+. + ..+ .+..+.||++.+.++++++|+++|+.+++++++
T Consensus 237 ~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~------ 309 (325)
T PRK00094 237 GLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL------ 309 (325)
T ss_pred cccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH------
Confidence 876655 4556656555422 22221 1 112 456788999999999999999999999999998
Q ss_pred CCCCCChHHHHHHH
Q 001973 420 GWGRQDDAAVVKVY 433 (988)
Q Consensus 420 g~g~~d~~a~~~~~ 433 (988)
+++.+...+++.+
T Consensus 310 -~~~~~~~~~~~~~ 322 (325)
T PRK00094 310 -YEGKDPREAVEDL 322 (325)
T ss_pred -cCCCCHHHHHHHH
Confidence 3455665555544
No 29
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.7e-23 Score=226.10 Aligned_cols=256 Identities=20% Similarity=0.258 Sum_probs=197.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------------------C-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------------------G-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------G-~~~~~s~~e~~~~aDvV 206 (988)
++|||||+|++|.++|..++++|++|+++|+++.+++.+++. | .+.++++.++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 799999999999999999999999999999999999988763 1 3456666665 499999
Q ss_pred EEEcCChH------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceE-ecCcccCCcccccCCC
Q 001973 207 VIMVTNEA------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL-VDAPVSGGVKRASMGE 279 (988)
Q Consensus 207 ~l~vp~~~------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~-ldapv~g~~~~a~~g~ 279 (988)
++|||+|- ++..+....+.+.+.|++|.+||.-||+.|++++++...+.+...|..+ .|.-+...|++...|.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~ 168 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGN 168 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCc
Confidence 99999984 2333333337889999999999999999999999999999875344333 2333333344444443
Q ss_pred --------eEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 001973 280 --------LTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLF 351 (988)
Q Consensus 280 --------l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~ 351 (988)
.-++.|-+++..+.++.+++.+-..++. ..+...|++.|+..|.+..+++++++|...+|+++|+|..+++
T Consensus 169 ~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~-vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevI 247 (436)
T COG0677 169 VLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIP-VTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVI 247 (436)
T ss_pred hhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEE-cCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 2244455677888889999998887665 5899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccccccccc-ccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001973 352 NIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 352 ~~l~~~~~~s~~~~~~~~~-~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
++.+.-.. +.-+.|+ -++|.+ ...|--++...++++|.++.+++.+.+++..-
T Consensus 248 eaAnt~P~----~~~~~PGpGvGGHC--------IpvDP~fl~~ka~~yg~~~rlI~tAreIN~~m 301 (436)
T COG0677 248 EAANTKPR----VNIFYPGPGVGGHC--------IPVDPYFLTWKAPEYGLPARLIRTAREINDSM 301 (436)
T ss_pred HHhccCCc----eeecCCCCCCCCcc--------cccCchheeecccccCCchHHHHHHHHHhccC
Confidence 97765433 2222333 133333 33666788888888888888888888877643
No 30
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=8.8e-24 Score=235.79 Aligned_cols=254 Identities=16% Similarity=0.218 Sum_probs=200.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.|||+|||+|.||++||.+|.++||+|++|||++. +++.++++++|+||+|+|+. .++.++ +.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~~~~v~---~~ 66 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-GVRPVA---EQ 66 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-HHHHHH---HH
Confidence 46999999999999999999999999999999853 57888899999999999995 688887 45
Q ss_pred hhhh-CCCCCEEEecCC-CCHHHHHHHHHHHHhcCCCceEecCccc--CCcccc-----cCCCeEEEEeCCHHHHHHHHH
Q 001973 226 AVSA-LSSGASIILSST-VSPGFVSQLERRLQFEGKDLKLVDAPVS--GGVKRA-----SMGELTIMAAGTEESLKSTGS 296 (988)
Q Consensus 226 i~~~-l~~g~ivId~st-~~p~~~~~l~~~l~~~~~g~~~ldapv~--g~~~~a-----~~g~l~~~~gg~~~~~~~~~~ 296 (988)
+.++ +.++++||++|+ ..|.+.+.+.+.+.. ++.+.|+. ++|..+ ..+++++++|++.+.++.+++
T Consensus 67 l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~-----~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ 141 (308)
T PRK14619 67 VQALNLPPETIIVTATKGLDPETTRTPSQIWQA-----AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQ 141 (308)
T ss_pred HHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH-----HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHH
Confidence 6553 678899999986 777776666666654 24456663 455443 235788999999999999999
Q ss_pred HHHhcCCeEEEEeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 297 VLSALSEKLYVIKGG-----------------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 297 ll~~~g~~v~~~~g~-----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+|+..+.++++ .++ .|.+..+|+.+|...+.+..++.|++.++++.|+++++++++ .+.+
T Consensus 142 ll~~~~~~~~~-~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~g 218 (308)
T PRK14619 142 IFSSERFRVYT-NSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLG 218 (308)
T ss_pred HhCCCcEEEEe-cCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchh
Confidence 99999988875 344 333555568999999999999999999999999999999985 2444
Q ss_pred CccccccccccccCCCCCCCchhhHH----------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC
Q 001973 360 SSWMFENRVPHMLDNDYTPYSALDIF----------------VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~l~~~----------------~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~ 423 (988)
.++. ..+.+..++|..+|.+... .||++.+.++++++|+++|++.++++++. ++
T Consensus 219 d~~~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~ 288 (308)
T PRK14619 219 DLLA---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GE 288 (308)
T ss_pred hhhe---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CC
Confidence 4443 2245666777667766666 89999999999999999999999999984 45
Q ss_pred CChHHHHHHHH
Q 001973 424 QDDAAVVKVYE 434 (988)
Q Consensus 424 ~d~~a~~~~~~ 434 (988)
.+...+++.+.
T Consensus 289 ~~~~~~~~~l~ 299 (308)
T PRK14619 289 ITPQQALEELM 299 (308)
T ss_pred CCHHHHHHHHH
Confidence 55555555443
No 31
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.89 E-value=8e-22 Score=220.06 Aligned_cols=266 Identities=17% Similarity=0.100 Sum_probs=211.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhcCC-------------cccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-----------QNVGG-------------LIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G~-------------~~~~s~~e~~~~ 202 (988)
|+|+|||+|.||.+||.+|+++||+|++||++++..+.. .+.|. ..++++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 589999999999999999999999999999999877653 34442 567889999999
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEE
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTI 282 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~ 282 (988)
||+|+.|+|+..+++..++ ..+.+.. ++.+++..||. +....++++.+.. .+..+++.|+.+.... .++.
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~--~~~~~~~hp~~p~~~~----~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALA-PPHAILASSTS-ALLASAFTEHLAG--RERCLVAHPINPPYLI----PVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCC--cccEEEEecCCCcccC----ceEE
Confidence 9999999999876666554 3343434 45555554444 5556677777644 5667888898653211 3566
Q ss_pred EEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 283 MAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 283 ~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+++ ++++.++.++++++.+|++++++ +..+.+. ++||+ ...+++|++.++++.|+|++++.+++..+.+
T Consensus 153 iv~~~~t~~~~~~~~~~~~~~lG~~~v~v-~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g 224 (308)
T PRK06129 153 VVPAPWTAPATLARAEALYRAAGQSPVRL-RREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLG 224 (308)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence 775 88999999999999999999885 5555554 45664 3467999999999999999999999999999
Q ss_pred CccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 001973 360 SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKV 432 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~ 432 (988)
.+|.+ ..|..+.+.|.++|....+.||..+..+++++.+.++|++....+.+-...+.-++..++..+.+.
T Consensus 225 ~~~~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 225 LRWSF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred CCccC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 98877 566666777778899999999999999999999999999988888777777777888888776654
No 32
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.7e-21 Score=208.93 Aligned_cols=254 Identities=22% Similarity=0.255 Sum_probs=206.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-----CcccCCHHHHh---ccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-----GLIANSPAEAA---KDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-----~~~~~s~~e~~---~~aDvV~l~vp~~~~~~~ 218 (988)
+.||+||+|-||+.+|.|++++||+|.+|||++++.+++.+.. +..+.|++|.+ +...-|+++|.....++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 5899999999999999999999999999999999999988753 44577888765 567899999998877888
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 298 (988)
++ ++++++|.+|+++||-.+.....+.+..+.+.+ +|++|+-.-|+||..++..|. ++|.||++++++.++|+|
T Consensus 84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~--~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil 157 (473)
T COG0362 84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE--KGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPIL 157 (473)
T ss_pred HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHh--cCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHH
Confidence 88 789999999999999988777777777777777 689999999999999999999 899999999999999999
Q ss_pred HhcCC------eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHhc---CCCcccccccc
Q 001973 299 SALSE------KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIITDS---GGSSWMFENRV 368 (988)
Q Consensus 299 ~~~g~------~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~~~---~~~s~~~~~~~ 368 (988)
..+.. .+.+ .|+-|+++.+|+++|-....-+++++|+..+.+. +|++.+++.+++... -..|+..+...
T Consensus 158 ~~IaAk~~g~pCc~~-iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~ 236 (473)
T COG0362 158 TKIAAKVDGEPCCTW-IGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITA 236 (473)
T ss_pred HHHHhhcCCCCceee-ECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHH
Confidence 98753 2445 4899999999999999999999999999999888 899988887776653 34565554433
Q ss_pred ccccCCCCCCC-chhhHHHHHH------HHHHHHHHhCCCCchHHH
Q 001973 369 PHMLDNDYTPY-SALDIFVKDM------GIIARECLSQRVPLHIST 407 (988)
Q Consensus 369 ~~~~~~~~~~~-~~l~~~~kDl------~~~~~~a~~~gi~~pi~~ 407 (988)
.-+...|-..+ .-++..+.-. ++....|.+.|+|++++.
T Consensus 237 ~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~ 282 (473)
T COG0362 237 DILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLIT 282 (473)
T ss_pred HHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHH
Confidence 33333333323 2333333222 377788899999988764
No 33
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.85 E-value=2.5e-20 Score=201.22 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=208.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
+||+|||.|+||+++|..|+++||+|++|.|+++.++++++. ++.+++|+.++++++|+|++++|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 699999999999999999999999999999999999998874 234688999999999999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHhcCC--CceEecCcccCCcccccCCCeEEEEeCCHH
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQFEGK--DLKLVDAPVSGGVKRASMGELTIMAAGTEE 289 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~~~~--g~~~ldapv~g~~~~a~~g~l~~~~gg~~~ 289 (988)
.. +++++ +.+.++++++.++|.+|. ..|++.+.+.+.+.+.-. .+.++++|-+.........+.+++.+.|.+
T Consensus 82 ~~-~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 82 QA-LREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred HH-HHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 54 88888 567678889999999884 455666667776665321 245667776666666666777888888999
Q ss_pred HHHHHHHHHHhcCCeEEEEeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 290 SLKSTGSVLSALSEKLYVIKGG-----------------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 290 ~~~~~~~ll~~~g~~v~~~~g~-----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
..++++.+|+.--.++|. ..+ .|....+++.+|...+++..+++|+.+++.++|.+++++..
T Consensus 158 ~a~~v~~~f~~~~Frvy~-~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g 236 (329)
T COG0240 158 AAEKVQALFSSPYFRVYT-STDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG 236 (329)
T ss_pred HHHHHHHHhCCCcEEEEe-cCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence 999999999875555554 233 36667777899999999999999999999999999999988
Q ss_pred HHHhc----CCCccccccccccc-cCCCCC------CCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 353 IITDS----GGSSWMFENRVPHM-LDNDYT------PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 353 ~l~~~----~~~s~~~~~~~~~~-~~~~~~------~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
+.+-| +++|..++|+.-+. +.+... ....+-+..+..+.+.++++++|+++|+++++++++..
T Consensus 237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~ 310 (329)
T COG0240 237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYE 310 (329)
T ss_pred cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 77665 57777777764432 222111 11234455677789999999999999999999999864
No 34
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.85 E-value=2.8e-21 Score=185.26 Aligned_cols=113 Identities=32% Similarity=0.516 Sum_probs=106.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccc-cccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPN-LLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~-~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
||||+++++++.+++|++.+|+++|||+++++|+|+.++++||+++++.|. +.+++|+| |+++++.||++++.++|++
T Consensus 8 l~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~ 87 (122)
T PF14833_consen 8 LANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRLALDLAKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999984 99999999 9999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.|+|+|+.+.+++.|+.+.++|+|++|+++++++|
T Consensus 88 ~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 88 AGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp TT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 99999999999999999999999999999999976
No 35
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.84 E-value=5.5e-20 Score=208.94 Aligned_cols=259 Identities=17% Similarity=0.150 Sum_probs=188.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----------------cCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----------------ANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----------------~~s~~e~~~~aDvV~l~ 209 (988)
|||+|||+|.||+.+|..|+++||+|++|||++. .+.+++.|... +++. +.+..+|+||+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 6899999999999999999999999999999754 46676665432 3344 567899999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC--c---ccCCccccc---CCCeE
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA--P---VSGGVKRAS---MGELT 281 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda--p---v~g~~~~a~---~g~l~ 281 (988)
+|++. ..+++ +.+.+.+.++++|+++++ .....+.+.+.++. .+++.+ | +..+|..+. .|++.
T Consensus 81 vk~~~-~~~~~---~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~----~~~~~g~~~~~~~~~~pg~~~~~~~g~l~ 151 (341)
T PRK08229 81 VKSAA-TADAA---AALAGHARPGAVVVSFQN-GVRNADVLRAALPG----ATVLAGMVPFNVISRGPGAFHQGTSGALA 151 (341)
T ss_pred ecCcc-hHHHH---HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCC----CcEEEEEEEEEEEecCCceEEecCCCceE
Confidence 99876 56666 577788888899888865 34555566665543 234444 2 343443333 45543
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVH--------------------IASAAEAMAFGA 341 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~--------------------~~~~~Ea~~la~ 341 (988)
+. +.+.++++.++|+..+.++++ .++++...|.|++.|++..+. ...+.|++.+++
T Consensus 152 ~~---~~~~~~~~~~~l~~~g~~~~~-~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~ 227 (341)
T PRK08229 152 IE---ASPALRPFAAAFARAGLPLVT-HEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLK 227 (341)
T ss_pred ec---CCchHHHHHHHHHhcCCCcee-cchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 32 345678999999999988887 689999999999999744333 377999999999
Q ss_pred HcCCCHHHHHHHHHhc-----CCCccccccccccccCCCCCCCchhhHHHHHHH------------HHHHHHHhCCCCch
Q 001973 342 RLGLNTRVLFNIITDS-----GGSSWMFENRVPHMLDNDYTPYSALDIFVKDMG------------IIARECLSQRVPLH 404 (988)
Q Consensus 342 ~~Gid~~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~------------~~~~~a~~~gi~~p 404 (988)
+.|++++.+.++...+ ...++.+....+.+...++.. ...|.+|+. ++++.|+++|+++|
T Consensus 228 a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P 304 (341)
T PRK08229 228 AAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAP 304 (341)
T ss_pred HcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCc
Confidence 9999987655443333 123344444434444444432 345999998 79999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 001973 405 ISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 405 i~~a~~~~~~~a~~~g~g~ 423 (988)
..+.++++++.+.+.|...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~ 323 (341)
T PRK08229 305 VNARLCALVHEAERAGARP 323 (341)
T ss_pred HHHHHHHHHHHHHhCCCcC
Confidence 9999999999998876443
No 36
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.83 E-value=2.3e-20 Score=200.23 Aligned_cols=114 Identities=34% Similarity=0.575 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
||||+++++++++++||+.|++|+|||++.+.+++++++++||+++++.++|++++|+| |.++++.||+++++++|++.
T Consensus 172 l~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~ 251 (286)
T COG2084 172 LANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKEL 251 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHH
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
|+++|+++++.++|+.+.+.|+|++|++++++.++
T Consensus 252 g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 252 GAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999998864
No 37
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.82 E-value=4.4e-20 Score=193.04 Aligned_cols=118 Identities=25% Similarity=0.455 Sum_probs=115.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|||||++++++.+++|+|.||+++|+|+..++|+|+.|.++|+++.++.|.|+.+||.| |.+++|.|||+++++++.+.
T Consensus 207 l~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~ 286 (327)
T KOG0409|consen 207 LCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESV 286 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g 118 (988)
++|+|++++++|+|+.+++.|+|+.|++++++.+++..+
T Consensus 287 ~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~ 325 (327)
T KOG0409|consen 287 KVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNG 325 (327)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999887654
No 38
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.81 E-value=2.2e-18 Score=192.60 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=165.9
Q ss_pred CeEEEEccchH--------------------HHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhcCCcccCCHHHHhc
Q 001973 147 TRVGFIGLGAM--------------------GFGMATHLLRSNFTVIGYDVYRP-----TLTKFQNVGGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~m--------------------G~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~G~~~~~s~~e~~~ 201 (988)
|||.|.|.|+- |.+||.+|+++||+|++|||+++ +.+.+.+.|+..++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 47777777753 88999999999999999999987 556677789988899999999
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHH-HHHHHHHHhc--CCCceEec-CcccCCcccccC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFV-SQLERRLQFE--GKDLKLVD-APVSGGVKRASM 277 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~-~~l~~~l~~~--~~g~~~ld-apv~g~~~~a~~ 277 (988)
+||+||+|+|++..++.++ +++.++++++++|||+||++|... +.+.+.+... ..++++.+ +++.++ ..
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~ 153 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQ 153 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----cc
Confidence 9999999999988789998 578889999999999999999987 6777777532 23555543 333333 44
Q ss_pred CCeEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 001973 278 GELTIMAAG--------TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRV 349 (988)
Q Consensus 278 g~l~~~~gg--------~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~ 349 (988)
+.+.++.++ +++.+++++++|+.+|++++++ +.|.++.+|+++|++.++..++.+|++.++++.|.++..
T Consensus 154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~--~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~ 231 (342)
T PRK12557 154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVV--PADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKE 231 (342)
T ss_pred chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEe--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 445666655 8999999999999999999774 479999999999999999999999999999999999988
Q ss_pred HHHHHH
Q 001973 350 LFNIIT 355 (988)
Q Consensus 350 ~~~~l~ 355 (988)
+.+-+.
T Consensus 232 ~~~~~~ 237 (342)
T PRK12557 232 MIEKQI 237 (342)
T ss_pred HHHHHH
Confidence 877444
No 39
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.9e-19 Score=186.02 Aligned_cols=263 Identities=22% Similarity=0.265 Sum_probs=205.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc---C--CcccCCHHHHh---ccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV---G--GLIANSPAEAA---KDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---G--~~~~~s~~e~~---~~aDvV~l~vp~~~~~~ 217 (988)
.+.||+||++-||+.++.|.+.+||.|.+|||+.++++++.+. | +.-..|++|.+ +...+|++.|+....++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 4689999999999999999999999999999999999998764 2 23467888875 46789999999999899
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSV 297 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 297 (988)
..+ +++.++|.+|++|||-.+.....+.+-.+.+.. +|+-|+.+-|+||.++++.|. ++|.||+++++..++++
T Consensus 86 ~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k--~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~i 159 (487)
T KOG2653|consen 86 QFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAK--KGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDI 159 (487)
T ss_pred HHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHh--cCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHH
Confidence 999 789999999999999988777766666777766 689999999999999999999 89999999999999999
Q ss_pred HHhcCCe-------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHhcC---CCcccccc
Q 001973 298 LSALSEK-------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIITDSG---GSSWMFEN 366 (988)
Q Consensus 298 l~~~g~~-------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~~~~---~~s~~~~~ 366 (988)
|..+..+ +.+ .|+-|+++.+||++|-+...-++.++|+..+.++ .|++.+++.+++.... .-|+..+.
T Consensus 160 fq~iaakv~~~epCc~w-vG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 160 FQKIAAKVSDGEPCCDW-VGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHhcCCCCCeee-ecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 9876432 445 4899999999999999999999999999999999 8899888888876542 34444433
Q ss_pred ccccccCCCCCCCchhhHHHHHH------HHHHHHHHhCCCCchHHH-HHHHHHHH
Q 001973 367 RVPHMLDNDYTPYSALDIFVKDM------GIIARECLSQRVPLHIST-IAHQLFLA 415 (988)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~~~kDl------~~~~~~a~~~gi~~pi~~-a~~~~~~~ 415 (988)
....+--.|-.+..-++....-. .+....|.++|+|.|++. ++...+-.
T Consensus 239 T~dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS 294 (487)
T KOG2653|consen 239 TADILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLS 294 (487)
T ss_pred hHHHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 32221111111111122221111 266777889999988764 44433333
No 40
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.80 E-value=2.9e-18 Score=202.80 Aligned_cols=263 Identities=16% Similarity=0.104 Sum_probs=190.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------cC-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-------------------VG-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-------------------~G-~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| +..++++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999999998766532 13 56788999999999999
Q ss_pred EEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC
Q 001973 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG 286 (988)
Q Consensus 207 ~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg 286 (988)
+.|+|+..+++..++ .++.+.++++ .+|++||+++..+ .+.+.+.. ++..+++.|+. |. ..+.++.+++|
T Consensus 85 ieavpe~~~vk~~l~--~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~--~~r~~~~hP~n--P~--~~~~Lvevv~g 154 (495)
T PRK07531 85 QESVPERLDLKRRVL--AEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTH--PERLFVAHPYN--PV--YLLPLVELVGG 154 (495)
T ss_pred EEcCcCCHHHHHHHH--HHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCC--cceEEEEecCC--Cc--ccCceEEEcCC
Confidence 999999988887665 3465556655 5677777776644 55665544 45677888865 22 34468888888
Q ss_pred C---HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 001973 287 T---EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIAS-AAEAMAFGARLGLNTRVLFNIITDSGGSSW 362 (988)
Q Consensus 287 ~---~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~-~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~ 362 (988)
+ ++.+++++++++.+|++++++ + |.++|++.+-+..+ +.|++.++++.|++++++.+++..+.+.+|
T Consensus 155 ~~t~~e~~~~~~~~~~~lG~~~v~~-~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 155 GKTSPETIRRAKEILREIGMKPVHI-A--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEee-c--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 6 799999999999999998875 3 67888888877777 599999999999999999999999988877
Q ss_pred ccccccccccCCCCCC-CchhhHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHH
Q 001973 363 MFENRVPHMLDNDYTP-YSALDIFVKDMGIIA-RECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431 (988)
Q Consensus 363 ~~~~~~~~~~~~~~~~-~~~l~~~~kDl~~~~-~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~ 431 (988)
....... ..|..+ ...+..+.+-++-.+ +...+.+-..++.....+.+....+.-++..++..+.+
T Consensus 226 ~~~Gpf~---~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (495)
T PRK07531 226 AQMGLFE---TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSGGLSIRELER 293 (495)
T ss_pred cccchHH---HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 6432211 111111 112333444444333 33466665566666666666666665566666555443
No 41
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=7.3e-18 Score=185.62 Aligned_cols=243 Identities=18% Similarity=0.235 Sum_probs=175.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC----CeEEEEeCCh-hHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYR-PTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
+.|||+|||+|+||.+|+++|.++| ++|++|||++ ++.+.+... |+..++++.++++++|+||+|||+.. +.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHH
Confidence 3469999999999999999999998 8999999986 466777654 88888899999999999999999755 666
Q ss_pred HHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCCceEecCcccCCcc---cccCCCeEEEEeCC---HHHH
Q 001973 219 VLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVK---RASMGELTIMAAGT---EESL 291 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~---~a~~g~l~~~~gg~---~~~~ 291 (988)
++ +++.+.+.++++||++ +++++++.+++. . . ++|+.+..+ .+..+.++++++++ ++.+
T Consensus 81 vl---~~l~~~~~~~~liIs~~aGi~~~~l~~~~---~---~-----~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~ 146 (279)
T PRK07679 81 AL---IPFKEYIHNNQLIISLLAGVSTHSIRNLL---Q---K-----DVPIIRAMPNTSAAILKSATAISPSKHATAEHI 146 (279)
T ss_pred HH---HHHHhhcCCCCEEEEECCCCCHHHHHHHc---C---C-----CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHH
Confidence 66 5777777888999996 888877665532 1 1 245555533 45556677887776 5688
Q ss_pred HHHHHHHHhcCCeEEE-----E--eCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcCCCc-c
Q 001973 292 KSTGSVLSALSEKLYV-----I--KGGCGAGSGVKMANQLLAGVHIASAAEAMA-FGARLGLNTRVLFNIITDSGGSS-W 362 (988)
Q Consensus 292 ~~~~~ll~~~g~~v~~-----~--~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~-la~~~Gid~~~~~~~l~~~~~~s-~ 362 (988)
+.++++|+.+|..++. . .+..|++.. + +..+.|++. .+++.|+|+++..+++..+...+ .
T Consensus 147 ~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa-------~----~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~ 215 (279)
T PRK07679 147 QTAKALFETIGLVSVVEEEDMHAVTALSGSGPA-------Y----IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAE 215 (279)
T ss_pred HHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHH-------H----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999986541 0 133343333 2 333444444 58999999999999998864332 3
Q ss_pred ccc--cccccccCCCC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 363 MFE--NRVPHMLDNDY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 363 ~~~--~~~~~~~~~~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
++. ...|..+.+++ +|+++.... ++..++.|+.--+.+++...++++.+-|
T Consensus 216 ~~~~~~~~~~~l~~~v~spgg~t~~g-------l~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 216 MLKASEKHPSILRKEITSPGGTTEAG-------IEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHhcCCCHHHHHHhcCCCchHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 333 45666777777 677774443 4445667877777788877777776643
No 42
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.77 E-value=2e-17 Score=195.20 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=152.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhcC-------------CcccCCHHHHh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-----------FQNVG-------------GLIANSPAEAA 200 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~G-------------~~~~~s~~e~~ 200 (988)
...+|||||+|.||..||.+|+.+||+|++||++++.+++ +.+.| ++.++++.+ +
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 3468999999999999999999999999999999998877 34555 466788866 5
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEE-EecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCccccc
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASI-ILSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRAS 276 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~iv-Id~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~ 276 (988)
.+||+||.|+|++.+++..++ .++...++++.++ .|+||.++. +++..+.. +..|.||++ +|++
T Consensus 85 ~~aDlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~------- 152 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM------- 152 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC-------
Confidence 699999999999999999887 3466667788888 489999886 35444432 223889999 7776
Q ss_pred CCCeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 277 MGELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 277 ~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
.++.+++| +++.++.+.++++.+|+.++++.+.+| ++.|-+. ..+++|++.++++.|++++++.++
T Consensus 153 --~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~a 221 (507)
T PRK08268 153 --KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAI 221 (507)
T ss_pred --eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 47788875 899999999999999999988632357 3444333 247999999999999999999999
Q ss_pred HHhcCC
Q 001973 354 ITDSGG 359 (988)
Q Consensus 354 l~~~~~ 359 (988)
+..+.+
T Consensus 222 l~~~~G 227 (507)
T PRK08268 222 LREAAG 227 (507)
T ss_pred HHhcCC
Confidence 876544
No 43
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.76 E-value=3e-18 Score=189.11 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=115.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
||||+++++++++++|++.+++++|||++.++++|+.++++||+++.+.+++.+++|+| |++++++||+++++++|++.
T Consensus 170 l~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~ 249 (292)
T PRK15059 170 VANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKAL 249 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~ 120 (988)
|+++|+.+.+++.|+.+.+.|+|++|++++++++++..+..
T Consensus 250 g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~~~ 290 (292)
T PRK15059 250 ALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHK 290 (292)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999876654
No 44
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.76 E-value=2.8e-17 Score=180.08 Aligned_cols=242 Identities=19% Similarity=0.211 Sum_probs=172.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEE-eCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGY-DVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||+|||+|+||.+|+++|.++|| +|++| ||++++.+.+.+.|+..++++.++++++|+||+|+| +.++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 589999999999999999999998 89999 999999999988899889999999999999999997 56699998
Q ss_pred cccchhhhCCCCCEEEecC-CCCHHHHHHHHHHHHhcCCCceEec-CcccCCcccccCCCeEEEE---eCCHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSS-TVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVKRASMGELTIMA---AGTEESLKSTGS 296 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~~a~~g~l~~~~---gg~~~~~~~~~~ 296 (988)
.++.+.+.++++||..+ +...... .+.+.. .+++. .|..+... ......++ +++++.++.+++
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~~~~~l---~~~~~~----~~vvr~mP~~~~~~---~~~~~~l~~~~~~~~~~~~~v~~ 146 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGITLADL---QEWAGG----RRVVRVMPNTPCLV---GEAASVMSLGPAATADDRDLVAT 146 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCCcHHHH---HHHcCC----CCEEEECCCcHHHH---hCceEEEEeCCCCCHHHHHHHHH
Confidence 46777788889888764 4433332 233221 14553 45433322 22223333 347889999999
Q ss_pred HHHhcCCeEEEEe--------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccc-c-
Q 001973 297 VLSALSEKLYVIK--------GGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE-N- 366 (988)
Q Consensus 297 ll~~~g~~v~~~~--------g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~-~- 366 (988)
+|+.+|. ++++. +..|++.+ +.+.++.++.|+ +.+.|+|++++.+++..+...++.+. .
T Consensus 147 l~~~~G~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~ 215 (266)
T PLN02688 147 LFGAVGK-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLET 215 (266)
T ss_pred HHHhCCC-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 77741 22444444 345566677777 89999999999999988766555421 1
Q ss_pred -cccccc-CCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 367 -RVPHML-DNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 367 -~~~~~~-~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
..|.-+ ..=.+|+.+ ....++..++.|++-.+.+++.+.++++.+.+
T Consensus 216 ~~~~~~l~~~v~spgG~-------t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 216 GKHPGQLKDMVTSPGGT-------TIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCHHHHHHhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 111111 111123322 24556777888999999999999999887753
No 45
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.75 E-value=3.4e-17 Score=181.21 Aligned_cols=192 Identities=17% Similarity=0.175 Sum_probs=148.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc------------------------CCcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV------------------------GGLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~------------------------G~~~~~s~~e~~~~ 202 (988)
.||+|||+|.||..||.+|+++||+|++||++++.++++.+. +++.++++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 489999999999999999999999999999999998776431 13457788899999
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEE-EecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeE
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASI-ILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~iv-Id~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
||+||+|+|++.+++..++ .++.+.+++++++ +++||.+|....+..+.. .+..|.||+ +|+.++ .++
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~-~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTEIASFTKRP-ERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCc-ccEEEEecC-CCcccC-------ceE
Confidence 9999999999988776665 4577778888866 789999987654433221 122477888 787654 588
Q ss_pred EEEeC---CHHHHHHHHHHHHhcCCeEEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 282 IMAAG---TEESLKSTGSVLSALSEKLYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 282 ~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
.+++| +++.+++++++++.+|++++++ ++ +| ++.|-+ ....++|++.+.+..-.+++++...+..+
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~~v~v-~d~~G------f~~nRl---~~~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKETVVV-NEFPG------FVTSRI---SALVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCccc------HHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 89988 8999999999999999999885 44 44 333433 23468899999887557899998887654
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 221 ~g 222 (288)
T PRK09260 221 LN 222 (288)
T ss_pred CC
Confidence 43
No 46
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.75 E-value=8.1e-18 Score=161.32 Aligned_cols=121 Identities=36% Similarity=0.629 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccccccc-ccCCCCCCCchhhHHHHHHHH
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFVKDMGI 391 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~-~~~~~~~~~~~l~~~~kDl~~ 391 (988)
|+|+.+|+++|++...++.+++|++.++++.|+|+++++++++.+++.|+.++++.|. +..++|.++|+++.+.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 7899999999999999999999999999999999999999999999999999999985 889999999999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 001973 392 IARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 392 ~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+.+++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999986
No 47
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.74 E-value=1.1e-16 Score=180.08 Aligned_cols=274 Identities=11% Similarity=0.025 Sum_probs=192.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhcC--------------CcccCCHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN-------FTVIGYDVYRP-----TLTKFQNVG--------------GLIANSPAE 198 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~G--------------~~~~~s~~e 198 (988)
..+||+|||.|+||+++|..|+++| |+|.+|.|+++ .++.+++.+ +.+++++.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3479999999999999999999998 89999999986 367776532 345788899
Q ss_pred HhccCcEEEEEcCChHHHHHHHccccchhh--hCCCCCEEEecCCCC-HHHH--HHHHHHHHhcC-CCceEecCcccCCc
Q 001973 199 AAKDVGVLVIMVTNEAQAESVLYGDLGAVS--ALSSGASIILSSTVS-PGFV--SQLERRLQFEG-KDLKLVDAPVSGGV 272 (988)
Q Consensus 199 ~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~--~l~~g~ivId~st~~-p~~~--~~l~~~l~~~~-~g~~~ldapv~g~~ 272 (988)
+++++|+|+++||+.. +++++ +.+.+ .+.++.++|.++.+. +.+- ..+.+.+.+.. ..+.++.+|-+...
T Consensus 90 av~~aDiIvlAVPsq~-l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~E 165 (365)
T PTZ00345 90 AVEDADLLIFVIPHQF-LESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVAND 165 (365)
T ss_pred HHhcCCEEEEEcChHH-HHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHH
Confidence 9999999999999754 88888 56666 677777888776432 2221 23444444321 23344555554444
Q ss_pred ccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCC----------------cchHHHHHHHHHHHHHHHHHHHHHH
Q 001973 273 KRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGG----------------CGAGSGVKMANQLLAGVHIASAAEA 336 (988)
Q Consensus 273 ~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea 336 (988)
......+.+++++.+.+..+.++.+|+.--.+++...+- .|....+++..|+..+++..++.|+
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em 245 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEM 245 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 445556777888889999999999998755555552221 2555566678999999999999999
Q ss_pred HHHHHHcC--CCHHHHHHHHHhc----CCCcccccccccc--ccCCCCCCCchhh------------HHHHHHHHHHHHH
Q 001973 337 MAFGARLG--LNTRVLFNIITDS----GGSSWMFENRVPH--MLDNDYTPYSALD------------IFVKDMGIIAREC 396 (988)
Q Consensus 337 ~~la~~~G--id~~~~~~~l~~~----~~~s~~~~~~~~~--~~~~~~~~~~~l~------------~~~kDl~~~~~~a 396 (988)
.++++++| .++++++++..-| +++| ++|+.-+ +..+. .+.+++ +.......+.+++
T Consensus 246 ~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~--~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~ 321 (365)
T PTZ00345 246 KLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRN--GKKSWEEIEAELLNGQKLQGTVTLKEVYEVL 321 (365)
T ss_pred HHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccC--CCCCHHHHHHHhhCCcEechHHHHHHHHHHH
Confidence 99999997 4899999877665 3444 5555322 22211 012222 2344566788999
Q ss_pred HhCCC--CchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 001973 397 LSQRV--PLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 397 ~~~gi--~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+++++ ++|+++++++++. ++.+....++.+
T Consensus 322 ~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l 353 (365)
T PTZ00345 322 ESHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVL 353 (365)
T ss_pred HHcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 99999 8999999999984 444444454444
No 48
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.74 E-value=1.2e-16 Score=180.54 Aligned_cols=268 Identities=13% Similarity=0.052 Sum_probs=188.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC---------------CcccCCHHHHhccCcEEEEE
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG---------------GLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G---------------~~~~~s~~e~~~~aDvV~l~ 209 (988)
.+|||+|||+|+||+++|..|+++| .|++|.|+++..+.+++.+ +..++++.++++++|+||++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 3579999999999999999999999 6889999999999888643 12456788889999999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCCCH-HHHHHHHHHHHhcC--CCceEecCcccCCcccccC---CC--eE
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP-GFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASM---GE--LT 281 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p-~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~---g~--l~ 281 (988)
+|.. .+++++ +.+.+.+.+++++|.++.+-. ++.+.+.+.+.+.. .....+. +|..+.+ |. ..
T Consensus 85 vps~-~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~-----GP~~a~ev~~g~~t~~ 155 (341)
T PRK12439 85 VPSH-GFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILA-----GPNIAREVAEGYAAAA 155 (341)
T ss_pred eCHH-HHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEE-----CCCHHHHHHcCCCeEE
Confidence 9964 488888 678888888887777765433 32333334443311 1122333 3444332 33 34
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcC
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKM-----------------ANQLLAGVHIASAAEAMAFGARLG 344 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl-----------------~~N~~~~~~~~~~~Ea~~la~~~G 344 (988)
++.+.+++..+.++.+|+.-+.+++. ..++-..++.|. ..|...+++..++.|+.+++++.|
T Consensus 156 via~~~~~~~~~v~~lf~~~~~~v~~-s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G 234 (341)
T PRK12439 156 VLAMPDQHLATRLSPLFRTRRFRVYT-TDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMG 234 (341)
T ss_pred EEEeCCHHHHHHHHHHhCCCCEEEEE-cCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 55566778889999999988878776 466655555554 444555577788999999999999
Q ss_pred CCHHHHHHHHHhc----CCCccccccccccccCCCCCCCchh----------hHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 001973 345 LNTRVLFNIITDS----GGSSWMFENRVPHMLDNDYTPYSAL----------DIFVKDMGIIARECLSQRVPLHISTIAH 410 (988)
Q Consensus 345 id~~~~~~~l~~~----~~~s~~~~~~~~~~~~~~~~~~~~l----------~~~~kDl~~~~~~a~~~gi~~pi~~a~~ 410 (988)
.++++++++..-+ +++|..++|+.-+.. +..+.++ -+...-...+.++++++++++|++++++
T Consensus 235 ~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~---l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~ 311 (341)
T PRK12439 235 GNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQ---LGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVD 311 (341)
T ss_pred CCcccccccchhhhhhhhccCCCCccHHHHHH---HHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9999999877665 466666666532211 1111222 2345556788999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHH
Q 001973 411 QLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 411 ~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+++. ++.+...+++.+
T Consensus 312 ~il~-------~~~~~~~~~~~l 327 (341)
T PRK12439 312 AVIN-------HGSTVEQAYRGL 327 (341)
T ss_pred HHHh-------CCCCHHHHHHHH
Confidence 9984 455555555444
No 49
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.72 E-value=1.4e-16 Score=187.51 Aligned_cols=189 Identities=20% Similarity=0.224 Sum_probs=147.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhcC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-----------QNVG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~~~ 202 (988)
.||+|||+|.||..||.+|+++||+|++||++++.+++. .+.| ++.++++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 589999999999999999999999999999999988653 3344 345778865 569
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHH--hcCCCceEec-CcccCCcccccCC
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQ--FEGKDLKLVD-APVSGGVKRASMG 278 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~--~~~~g~~~ld-apv~g~~~~a~~g 278 (988)
||+||.|+|+..+++..++ ..+...++++.++. ++||.++. ++++.+. .+..|.||++ +|++
T Consensus 85 aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred CCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence 9999999999999998887 34556666666655 56666654 3444442 2235889998 7776
Q ss_pred CeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 279 ELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 279 ~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
.++.+++| +++.++.+.++++.+|+.++++.+.+|. ++|+++. .+++|++.+.++.+++++++.+++.
T Consensus 151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~----~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR----PYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 37888888 8999999999999999999885323663 4444443 5799999999999999999999987
Q ss_pred hcCC
Q 001973 356 DSGG 359 (988)
Q Consensus 356 ~~~~ 359 (988)
.+.+
T Consensus 222 ~~~G 225 (503)
T TIGR02279 222 DGAG 225 (503)
T ss_pred hcCC
Confidence 6544
No 50
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.72 E-value=1.1e-16 Score=178.83 Aligned_cols=258 Identities=13% Similarity=0.053 Sum_probs=185.0
Q ss_pred eEEEEccchHHHHHHHHHHhCC--------CeEEEEeC-----ChhHHHHHHhc--------C------CcccCCHHHHh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSN--------FTVIGYDV-----YRPTLTKFQNV--------G------GLIANSPAEAA 200 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~--------G------~~~~~s~~e~~ 200 (988)
||+|||.|+||+++|..|+.+| |+|++|.| +++..+.+++. | +++++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 55666666542 2 23567899999
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCC-CHH--HHHHHHHHHHhcC-CCceEecCcccCCccccc
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV-SPG--FVSQLERRLQFEG-KDLKLVDAPVSGGVKRAS 276 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~-~p~--~~~~l~~~l~~~~-~g~~~ldapv~g~~~~a~ 276 (988)
+++|+||+++|+.. ++.++ +.+.+++.+++++|.++.+ .+. +...+.+.+.+.. ..+.++.+|.+.......
T Consensus 81 ~~ADiIIlAVPs~~-i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~ 156 (342)
T TIGR03376 81 KGADILVFVIPHQF-LEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKE 156 (342)
T ss_pred hcCCEEEEECChHH-HHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcC
Confidence 99999999999855 88887 6788888888888888743 333 4345555554421 234445555555444455
Q ss_pred CCCeEEEEeCC----HHHHHHHHHHHHhcCCeEEEEeCC----------------cchHHHHHHHHHHHHHHHHHHHHHH
Q 001973 277 MGELTIMAAGT----EESLKSTGSVLSALSEKLYVIKGG----------------CGAGSGVKMANQLLAGVHIASAAEA 336 (988)
Q Consensus 277 ~g~l~~~~gg~----~~~~~~~~~ll~~~g~~v~~~~g~----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea 336 (988)
..+.+++++.+ .+..+.++.+|+.--.+++...+- .|....+++..|+..+++..++.|+
T Consensus 157 ~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em 236 (342)
T TIGR03376 157 KFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEM 236 (342)
T ss_pred CCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56667777778 788999999998655555542221 2555555678899999999999999
Q ss_pred HHHHHHcCCCHH--HHHHHHHhc----CCCccccccccccccCCCCCC-CchhhHHH------------HHHHHHHHHHH
Q 001973 337 MAFGARLGLNTR--VLFNIITDS----GGSSWMFENRVPHMLDNDYTP-YSALDIFV------------KDMGIIARECL 397 (988)
Q Consensus 337 ~~la~~~Gid~~--~~~~~l~~~----~~~s~~~~~~~~~~~~~~~~~-~~~l~~~~------------kDl~~~~~~a~ 397 (988)
.++++++|.+++ +++++..-+ +++| ++|+.-+ ..+.. +.+++... .-...+.++++
T Consensus 237 ~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G---~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~ 311 (342)
T TIGR03376 237 IKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVG---RAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLK 311 (342)
T ss_pred HHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHH---HHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHH
Confidence 999999999877 888766655 3444 4554221 11112 33344333 34467789999
Q ss_pred hCCCC--chHHHHHHHHHH
Q 001973 398 SQRVP--LHISTIAHQLFL 414 (988)
Q Consensus 398 ~~gi~--~pi~~a~~~~~~ 414 (988)
++++. +|+++++++++.
T Consensus 312 ~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 312 NKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred HcCCCcCCCHHHHHHHHHh
Confidence 99999 999999999985
No 51
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.70 E-value=7.1e-17 Score=179.05 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-ccccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-NLLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
|+||++.+.++++++|++.+++++|||++.++++|+.++++|+++..+.+ ++.++||++ |++++++||+++++++|++
T Consensus 172 l~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~ 251 (296)
T PRK15461 172 LINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQ 251 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999888888877765 899999999 9999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
.|+|+|+++++++.|+.+.++|+|++|++++++++++..|.
T Consensus 252 ~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 252 LHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999887665
No 52
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=1e-15 Score=171.62 Aligned_cols=194 Identities=17% Similarity=0.212 Sum_probs=139.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----C--------------CcccCCHHHHhccCcEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----G--------------GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G--------------~~~~~s~~e~~~~aDvV 206 (988)
.+||+|||+|.||.+||..|+++||+|++||+++++.+.+.+. | +..++++.+++++||+|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4689999999999999999999999999999999888776541 2 24567888889999999
Q ss_pred EEEcCChHHH-HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc--CCCceEecCcccCCcccccCCCeEEE
Q 001973 207 VIMVTNEAQA-ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE--GKDLKLVDAPVSGGVKRASMGELTIM 283 (988)
Q Consensus 207 ~l~vp~~~~~-~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~--~~g~~~ldapv~g~~~~a~~g~l~~~ 283 (988)
|+|+|...+. ..++ ..+.+.++++++|+ ++|.++. ...+++.+... ..+.|+.+.|.. +.++.+
T Consensus 84 i~av~~~~~~~~~v~---~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~~~ig~h~~~p~~~--------~~l~~i 150 (311)
T PRK06130 84 IEAVPEKLELKRDVF---ARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPERFVGTHFFTPADV--------IPLVEV 150 (311)
T ss_pred EEeccCcHHHHHHHH---HHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcccEEEEccCCCCcc--------CceEEE
Confidence 9999987654 4454 45555565665554 3333333 33555555321 113444443321 224455
Q ss_pred EeC---CHHHHHHHHHHHHhcCCeEEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 284 AAG---TEESLKSTGSVLSALSEKLYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 284 ~gg---~~~~~~~~~~ll~~~g~~v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+.+ +++.++.+.++++.+|++++++..+ +|. +++|++. ..++|++.++++.|++++++.+++..+.+
T Consensus 151 ~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 151 VRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 554 6899999999999999988875323 454 6777754 56999999999999999999999987665
Q ss_pred Cc
Q 001973 360 SS 361 (988)
Q Consensus 360 ~s 361 (988)
..
T Consensus 222 ~~ 223 (311)
T PRK06130 222 IR 223 (311)
T ss_pred CC
Confidence 43
No 53
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=8.8e-16 Score=169.04 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=148.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhcCC-------------cccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-----------FQNVGG-------------LIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~G~-------------~~~~s~~e~~~ 201 (988)
+.||||||+|.||..||..|+.+||+|++||++++..+. +.+.|. +.++++ +.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 358999999999999999999999999999999998776 444443 257777 5589
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhC-CCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCcccccCCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSAL-SSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVKRASMGE 279 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l-~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~~a~~g~ 279 (988)
+||+||.|+|...+++..++ ..+...+ +++++++..||..|.+........+++..|.||++ +|+++.. +
T Consensus 84 ~~d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------E 155 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------E 155 (286)
T ss_pred CCCEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------E
Confidence 99999999999999988887 3555556 78999999998888877655444444223788888 4555444 3
Q ss_pred eEEEEeCCHHHHHHHHHHHH-hcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 001973 280 LTIMAAGTEESLKSTGSVLS-ALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG 358 (988)
Q Consensus 280 l~~~~gg~~~~~~~~~~ll~-~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~ 358 (988)
++...+++++.++++.+++. .+|+.++++.+.+|. +.|-+ ....++|++.+.+..-.+++++..++..+.
T Consensus 156 lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf------i~nRi---~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 156 LVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF------VVNAL---LVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh------HHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 44445689999999999988 599998875333552 33322 345689999998876678999998886554
Q ss_pred C
Q 001973 359 G 359 (988)
Q Consensus 359 ~ 359 (988)
+
T Consensus 227 G 227 (286)
T PRK07819 227 A 227 (286)
T ss_pred C
Confidence 4
No 54
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.68 E-value=1.1e-15 Score=170.02 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=142.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhcC-------------CcccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-----------FQNVG-------------GLIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~G-------------~~~~~s~~e~~~ 201 (988)
.+||+|||+|.||.+||.+|+.+|++|++||+++++.+. +.+.| ....++ .++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN-LEELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC-HHHhC
Confidence 468999999999999999999999999999999988753 33333 223344 46789
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCe
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
+||+||.|+|.+.+++..++ .++.+.++++++|+ ++|+.++....+.... +.+..++||.++|+.+ .+
T Consensus 83 ~aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~-~~r~~g~h~~~pp~~~--------~l 151 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISITRLASATQR-PQQVIGMHFMNPPPIM--------KL 151 (295)
T ss_pred CCCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCC-CcceEEEeccCCcccC--------ce
Confidence 99999999998888877765 45677788888886 7888877664443221 1122467888888653 33
Q ss_pred EEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 281 TIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 281 ~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+.++. ++++.++.++++++.+|+.++++.+..| .++++++.. .++|++.+.+....+++++..++..+
T Consensus 152 veiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~~----~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 152 VEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILMP----MINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 44553 5889999999999999999887533344 244555543 48999999888778899998877654
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 223 ~g 224 (295)
T PLN02545 223 TN 224 (295)
T ss_pred cC
Confidence 43
No 55
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.68 E-value=1.9e-14 Score=158.24 Aligned_cols=192 Identities=18% Similarity=0.281 Sum_probs=147.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcCCc-ccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVGGL-IANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G~~-~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||+|||+|.||..||.+|.++|+ +|++|||++++.+.+.+.|.. .+.++.++. ++|+||+|+|... +.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH---
Confidence 489999999999999999999996 799999999999988888864 455777765 5999999999876 44455
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCC----ccccc----CCCeEEEEe---CCHHHH
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGG----VKRAS----MGELTIMAA---GTEESL 291 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~----~~~a~----~g~l~~~~g---g~~~~~ 291 (988)
.++.+ ++++++|+|++++.+...+.+.+. .+..|+.+ |+.|+ |..+. .|..+++++ ++++.+
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-----~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~ 149 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH-----IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQ 149 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh-----cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHH
Confidence 46777 888999999999877766555443 12467877 98764 44433 577677775 467789
Q ss_pred HHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 292 KSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 292 ~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
+.++++|+.+|.+++++ ++.+....+++++++.. +...++.+++. .+.+.+.+.++..
T Consensus 150 ~~v~~l~~~~G~~~~~~-~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~ 207 (275)
T PRK08507 150 ERAKEIFSGLGMRIVYM-DAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHHHhCCEEEEe-CHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhcc
Confidence 99999999999999884 88899999999999875 44555555542 3666666655544
No 56
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.68 E-value=1.1e-14 Score=166.21 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=177.9
Q ss_pred HHHHHHhHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhhCcC-CCCCchhHHHHHHhhhcccccccccccccCchhhHH
Q 001973 62 LNAFIQNLGIALDMAKTL---AFPLPLLAVAHQQLILGLSHAH-ANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAK 137 (988)
Q Consensus 62 l~l~~KDl~la~~~a~~~---g~~~p~~~~~~~~~~~a~~~G~-g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 137 (988)
++++.|=++++.+.++-. |.|.--...-.+.++...+..- .+.|-..+-++|+..-......+...+.
T Consensus 20 v~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~-------- 91 (374)
T PRK11199 20 LELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGF-------- 91 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhcc--------
Confidence 567777778888776653 4554444555555655544321 2233333334444333221111111111
Q ss_pred HhhhcCCCCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 138 QITAKSNSVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 138 ~~~m~~~~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+..+...++|+||| +|.||..+|..|.++||+|++||++.. +++.+++++||+||+|+|....
T Consensus 92 --~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~- 155 (374)
T PRK11199 92 --KTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLT- 155 (374)
T ss_pred --cccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHH-
Confidence 11122346999999 999999999999999999999998631 3567788899999999999774
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCcccccCCCeEEEEeC-CHHHHHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKRASMGELTIMAAG-TEESLKST 294 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~a~~g~l~~~~gg-~~~~~~~~ 294 (988)
..++ +++.+ ++++++|+|++|+++.....+.+... ..|+ ..|++|+......+..++++++ +++.++.+
T Consensus 156 ~~~~---~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~-----~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~ 226 (374)
T PRK11199 156 EEVI---ARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS-----GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWL 226 (374)
T ss_pred HHHH---HHHhC-CCCCcEEEECCCccHHHHHHHHHhCC-----CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHH
Confidence 5555 46666 88999999999999888777766432 2477 6688887666666777777776 56788999
Q ss_pred HHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 295 GSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 295 ~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
.++++.+|.++++ .++.++...+++++.+ .++.+++++..+++ .|.+.+.+.+
T Consensus 227 ~~l~~~lG~~v~~-~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 227 LEQIQVWGARLHR-ISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHCCCEEEE-CCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 9999999999988 4888999999998844 56777888888877 7888777654
No 57
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.68 E-value=2.9e-15 Score=168.97 Aligned_cols=261 Identities=11% Similarity=0.043 Sum_probs=166.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--C------------cccCCHHHHh-ccCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--G------------LIANSPAEAA-KDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--~------------~~~~s~~e~~-~~aDvV~l~vp 211 (988)
|||+|||+|+||+.+|..|+++||+|++|+|+++.++.+++.+ . +.++++.+++ ..+|+||++||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 4899999999999999999999999999999999888887632 1 2345666766 58999999999
Q ss_pred ChHHHHHHHccccchhh-hCCCCCEEEecCCCC-HHH----HHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe
Q 001973 212 NEAQAESVLYGDLGAVS-ALSSGASIILSSTVS-PGF----VSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA 285 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~-~l~~g~ivId~st~~-p~~----~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g 285 (988)
+.. +++++ +.+.+ .+.+++.++.++++. ..+ .+.+.+.++. ..+..+.+|-..........+...+.+
T Consensus 81 s~~-~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~ 154 (326)
T PRK14620 81 TQQ-LRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAG 154 (326)
T ss_pred HHH-HHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEec
Confidence 855 77777 56776 777776565555443 211 2223333322 122233344211111111223345555
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCC--C
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG-----------------VHIASAAEAMAFGARLGL--N 346 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~-----------------~~~~~~~Ea~~la~~~Gi--d 346 (988)
.+.+..+++..+|+.-+.+++. ..++-..++.|++-|.+.. ++..++.|+..++++.|. +
T Consensus 155 ~~~~~~~~l~~~l~~~~~~~~~-~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~ 233 (326)
T PRK14620 155 QNETLGSSLISKLSNENLKIIY-SQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSID 233 (326)
T ss_pred CCHHHHHHHHHHHCCCCeEEEe-cCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6666677888888887777776 5788778888887776433 456778999999999997 7
Q ss_pred HHHHHHHHHhc----CCCcccccccccc--ccCC----CC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001973 347 TRVLFNIITDS----GGSSWMFENRVPH--MLDN----DY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFL 414 (988)
Q Consensus 347 ~~~~~~~l~~~----~~~s~~~~~~~~~--~~~~----~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~ 414 (988)
+++++++..-+ ++.+...+|+.-+ +..+ |. ...-+.-....-++.+.++++++|+++|+++.+++++.
T Consensus 234 ~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~ 312 (326)
T PRK14620 234 LNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLY 312 (326)
T ss_pred cchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 88885322211 1222222332210 0000 00 00001112334556889999999999999999999873
No 58
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=3.1e-15 Score=166.03 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=140.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~~ 201 (988)
.+||+|||+|.||..||.+|+++|++|++||++++.++.+.+ .| +..+++++ .++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence 468999999999999999999999999999999988776432 23 34566764 578
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCcccccC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRASM 277 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~~ 277 (988)
+||+||+|+|+..+++..++ +++.+.++++++++ ++||..+. .+++.+.. +..+.||++ +|++....
T Consensus 83 ~aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~ve---- 153 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLVE---- 153 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceEE----
Confidence 99999999999876655544 56778888898887 66666553 45555432 123677887 34442221
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 278 GELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 278 g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+....+++++.++.+.++++.+|+.++++ ++.+ .+++++++.. .++|++.+.+..-.+++++..++..+
T Consensus 154 --i~~g~~t~~~~~~~~~~~~~~~gk~~v~~-~d~p----g~i~nRl~~~----~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 154 --LIRGIATDEATFEAAKEFVTKLGKTITVA-EDFP----AFIVNRILLP----MINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred --EeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcC----ChHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 11113588999999999999999998874 5544 5666777654 48899988887445889998887644
Q ss_pred C
Q 001973 358 G 358 (988)
Q Consensus 358 ~ 358 (988)
.
T Consensus 223 ~ 223 (292)
T PRK07530 223 A 223 (292)
T ss_pred C
Confidence 3
No 59
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.65 E-value=6.7e-16 Score=170.85 Aligned_cols=113 Identities=28% Similarity=0.491 Sum_probs=106.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-------ccccCCCCc-chHHHHHHhHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-------NLLRGDAKL-HFLNAFIQNLGIA 72 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~-f~l~l~~KDl~la 72 (988)
|+||++.++++++++|++.+++++|+|++.++++++.++++||++..+.+ .+.++||++ |++.+++||++++
T Consensus 167 l~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~ 246 (288)
T TIGR01692 167 ICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLA 246 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHH
Confidence 68999999999999999999999999999999999999999998887655 347899999 9999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 73 LDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 73 ~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.++|++.|+|+|+++.+.+.|+++.++|+|++|++++++++
T Consensus 247 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 247 QDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999875
No 60
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.63 E-value=1.5e-15 Score=168.52 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=114.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||++.++++.+++|++.+++++|+|++.+.++++.+.++||+++.+.+++.+++|+| |+++++.||++++++++++.
T Consensus 170 l~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~ 249 (291)
T TIGR01505 170 VANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAV 249 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
|+++|+.+.+++.|+.+.+.|+|++|++++++++++.++.
T Consensus 250 g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~ 289 (291)
T TIGR01505 250 GANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANH 289 (291)
T ss_pred CCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999886654
No 61
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.62 E-value=9.2e-14 Score=161.61 Aligned_cols=195 Identities=18% Similarity=0.257 Sum_probs=152.1
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-HhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||+||| +|.||..+|..|.++|++|++|||++++..++ .+.|+..++++.+++.++|+||+|+|... +..++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~-~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINV-TEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHH-HHHHH---H
Confidence 5899997 89999999999999999999999999886544 34577777888899999999999999865 56776 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCCCeEEEEeC---CHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMGELTIMAAG---TEESLKSTGSVLSA 300 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~ 300 (988)
.+.+.++++++|+|++++.+.....+.+.++ .+..|+.+ |++|.......+...+++.+ +++.++.++++|+.
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~---~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~ 153 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP---EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEK 153 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC---CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7788889999999999999888888887654 36788888 88876555566776777654 57788999999999
Q ss_pred cCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 301 ~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
+|.+++++ ++- +--+++.+.....++.+++.+..+ .+.|.+.+....+
T Consensus 154 ~G~~v~~~-~~e---~HD~~~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 154 EGARVIVT-SPE---EHDRIMSVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred cCCEEEEC-CHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 99998874 333 334455555555555556655544 6679987776543
No 62
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.61 E-value=8.6e-15 Score=161.20 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=135.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-ccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|||+|||+|.||..+|..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|... +..++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH---HH
Confidence 489999999999999999999999999999999999988887753 23333457889999999999766 44555 57
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCc-cccc-------CCCeEEEE---eCCHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGV-KRAS-------MGELTIMA---AGTEESLKS 293 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~-~~a~-------~g~l~~~~---gg~~~~~~~ 293 (988)
+.+.++++.+|+|++++++...+.+.+.. ..|+. .|+.|++ .... .+...+++ .++++.++.
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~~------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~ 150 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKLH------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAI 150 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHhh------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHH
Confidence 77888899999999999887766554322 24666 5888775 2332 23333333 357888999
Q ss_pred HHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHH
Q 001973 294 TGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIAS 332 (988)
Q Consensus 294 ~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~ 332 (988)
++++++.+|.++++ .++.+....+++++|+...+...+
T Consensus 151 v~~l~~~lG~~~v~-~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 151 VEELAVSLGSKIYT-ADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHcCCEEEE-cCHHHHHHHHHHHcchHHHHHHHH
Confidence 99999999999887 488999999999998876654333
No 63
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.61 E-value=1.2e-13 Score=148.12 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=120.6
Q ss_pred CeEEEEccch--------------------HHHHHHHHHHhCCCeEEEEeCChhHH-----HHHHhcCCcccCCHHHHhc
Q 001973 147 TRVGFIGLGA--------------------MGFGMATHLLRSNFTVIGYDVYRPTL-----TKFQNVGGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~--------------------mG~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~G~~~~~s~~e~~~ 201 (988)
|||.|.|+|+ =|.+||.+|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 4778888776 38899999999999999999987655 4588889999999999999
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHH-HHhcCCCceEecCcccCCcccccCCCe
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERR-LQFEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~-l~~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
++|+||+|+|++.++++++ +++.+++++|++|||+||++|.....+-+. ++-...++...+.. -++.+.......
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~H-P~~vP~~~~~~~ 156 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMH-PAAVPGTPQHGH 156 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccC-CCCCCCCCCCce
Confidence 9999999999999999998 578899999999999999999988776554 33222333332221 122222222223
Q ss_pred EEEEe--------CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 281 TIMAA--------GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 281 ~~~~g--------g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
.++.| .+++..+++.++.+..++..|.+
T Consensus 157 ~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 157 YVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred eeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 33333 26789999999999999998876
No 64
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.59 E-value=5.7e-15 Score=164.42 Aligned_cols=119 Identities=22% Similarity=0.349 Sum_probs=115.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||++.++++++++|++.++++.|+|++.+.++++.+.++|++++.+.+++.++||.+ |+++++.||+++++++|++.
T Consensus 173 l~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~ 252 (296)
T PRK11559 173 LANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGV 252 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
|+++|+.+.+.+.|+.+.+.|+|++|++++++++++.++.
T Consensus 253 g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~ 292 (296)
T PRK11559 253 GAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKV 292 (296)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999887765
No 65
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.59 E-value=5.2e-14 Score=155.70 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=134.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------------------------CCcccCCHHHHh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------------------------GGLIANSPAEAA 200 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------------G~~~~~s~~e~~ 200 (988)
.+||+|||+|.||..||..|+.+|++|++||++++.++++.+. ++..++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 3689999999999999999999999999999999877665421 234578888999
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccC
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASM 277 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~ 277 (988)
++||+||.|+|+..+++..++ +++.+.++++++|+ ++||..+.. +++.+.. +..|.||.+.| ..
T Consensus 83 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~~r~vg~Hf~~p~--------~~ 149 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPSQ---FAEATGRPEKFLALHFANEI--------WK 149 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHHH---HHhhcCCcccEEEEcCCCCC--------Cc
Confidence 999999999998765544433 56777788888885 455555543 3333221 11233432221 12
Q ss_pred CCeEEEE---eCCHHHHHHHHHHHHhcCCeEEEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 278 GELTIMA---AGTEESLKSTGSVLSALSEKLYVIK-GGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 278 g~l~~~~---gg~~~~~~~~~~ll~~~g~~v~~~~-g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
..++.++ .++++.++.+.++++.+|+.++++. +.+|. +.|-+ ....++|++.+.+....+++++..+
T Consensus 150 ~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf------i~nRi---~~~~~~ea~~l~~~g~a~~~~iD~a 220 (287)
T PRK08293 150 NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY------ILNSL---LVPFLSAALALWAKGVADPETIDKT 220 (287)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH------hHHHH---HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2334444 4678999999999999999877653 33442 22322 3346899999988877899999988
Q ss_pred HHhcCC
Q 001973 354 ITDSGG 359 (988)
Q Consensus 354 l~~~~~ 359 (988)
+..+.+
T Consensus 221 ~~~~~g 226 (287)
T PRK08293 221 WMIATG 226 (287)
T ss_pred HHhccC
Confidence 766554
No 66
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.59 E-value=2.3e-13 Score=150.84 Aligned_cols=261 Identities=15% Similarity=0.114 Sum_probs=168.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC---------CcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG---------GLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G---------~~~~~s~~e~~~~aDv 205 (988)
..||+|||+|.||..||.+|+.+||+|++||++++..+.+.+ .| +..++++++++++||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 358999999999999999999999999999999887655322 22 3567789999999999
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccCCCeEEE
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASMGELTIM 283 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~g~l~~~ 283 (988)
|+.|+|...+++..++ .++.+.++++. |+.+||+ +-...++++.+.. +..+.||...|-.- .++-+
T Consensus 87 ViEavpE~l~vK~~lf--~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~p~R~~g~HffnP~~~~--------pLVEV 154 (321)
T PRK07066 87 IQESAPEREALKLELH--ERISRAAKPDA-IIASSTS-GLLPTDFYARATHPERCVVGHPFNPVYLL--------PLVEV 154 (321)
T ss_pred EEECCcCCHHHHHHHH--HHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCCcccEEEEecCCccccC--------ceEEE
Confidence 9999999999888877 67777888877 5566655 3344455555432 11244555433211 23333
Q ss_pred Ee---CCHHHHHHHHHHHHhcCCeEEEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 284 AA---GTEESLKSTGSVLSALSEKLYVIK-GGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 284 ~g---g~~~~~~~~~~ll~~~g~~v~~~~-g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+. .+++.++.+..+++.+|+..+++. +.+| ++.|-+ ...+++|++.+.+....+++++..++..+.+
T Consensus 155 v~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl---~~a~~~EA~~lv~eGvas~edID~a~~~g~g 225 (321)
T PRK07066 155 LGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRL---LEALWREALHLVNEGVATTGEIDDAIRFGAG 225 (321)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 33 478999999999999999887752 3344 334433 3456999999999988999999999887776
Q ss_pred CccccccccccccCCCCCCC-chhhHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHH
Q 001973 360 SSWMFENRVPHMLDNDYTPY-SALDIFVKDMGIIA-RECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~-~~l~~~~kDl~~~~-~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~ 431 (988)
..|...... ..-|..+. ..+..+.+.++-.. +...+.+. ..+.....+.+....+.-+|.+.+..+.+
T Consensus 226 ~r~~~~Gpf---~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (321)
T PRK07066 226 IRWSFMGTF---LTYTLAGGDAGMRHFMQQFGPALELPWTKLVA-PELTDALIDRVVEGTAEQQGPRSIKALER 295 (321)
T ss_pred CCccCcCHH---HHhhhcChHHHHHHHHHHhhhhhhHHHHhcCC-CcccHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 655322211 11111110 11233333333222 22344444 22444445544455554556565555543
No 67
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.56 E-value=7.4e-14 Score=154.91 Aligned_cols=193 Identities=16% Similarity=0.154 Sum_probs=139.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh--------------cCC-------------cccCCHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN--------------VGG-------------LIANSPAEA 199 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--------------~G~-------------~~~~s~~e~ 199 (988)
.||+|||+|.||..||..|+++|++|++||++++.++...+ .|. ..+++. ++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999999988764321 121 234455 57
Q ss_pred hccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCccccc
Q 001973 200 AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRAS 276 (988)
Q Consensus 200 ~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~ 276 (988)
+++||+||.|+|.+..++..++ +.+.+.++++++++..++.. ...++++.+.. +..+.||.+ +|+++..+ +.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~ 157 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE-VV 157 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-Ee
Confidence 7899999999999876555443 45677788888877544433 33455555532 123678887 56666543 33
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001973 277 MGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITD 356 (988)
Q Consensus 277 ~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~ 356 (988)
.|.. .+++.++.+.++++.+|+.++++ ++.+.....|+++| .++|++.+.+..-.+++++..++..
T Consensus 158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v-~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~~ 223 (291)
T PRK06035 158 RAAL-----TSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCKL 223 (291)
T ss_pred CCCC-----CCHHHHHHHHHHHHHcCCeEEEe-CCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHhh
Confidence 4442 38999999999999999999885 77776666666555 4678888887644689999988765
Q ss_pred cCC
Q 001973 357 SGG 359 (988)
Q Consensus 357 ~~~ 359 (988)
+.+
T Consensus 224 ~~g 226 (291)
T PRK06035 224 AFG 226 (291)
T ss_pred cCC
Confidence 443
No 68
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.56 E-value=1.9e-13 Score=152.84 Aligned_cols=254 Identities=15% Similarity=0.144 Sum_probs=165.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-------------ccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-------------IANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-------------~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+++.|.. ..++..++...+|+||+|+|+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 5899999999999999999999999999999 8888888876542 2345666668999999999986
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCcccccCCCeEEEEeC----C
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASMGELTIMAAG----T 287 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~g~l~~~~gg----~ 287 (988)
. +++++ +.+.+.+.++++|+.+.+. .+....+.+.++... .++.+..++..++-.-...+.-.+.+|. .
T Consensus 80 ~-~~~~~---~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 80 Q-LDAAI---PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred C-HHHHH---HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 5 67776 5677777788888776654 233445555554310 1233344443322111111222244443 2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC
Q 001973 288 EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLGLN 346 (988)
Q Consensus 288 ~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~Gid 346 (988)
.+..+.+..+|...+.++.. ..++-...|.|++.|...+ .+...+.|..+++++.|++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~-~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~ 233 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVL-SENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAP 233 (305)
T ss_pred CHHHHHHHHHHHhCCCCcee-cHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCC
Confidence 35666788888888876655 5788899999998886542 4456688999999999975
Q ss_pred --HHHHHHHHHhc---C--CCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 001973 347 --TRVLFNIITDS---G--GSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGS 417 (988)
Q Consensus 347 --~~~~~~~l~~~---~--~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~ 417 (988)
.+.+.+.+... . ..|.++... ..+... -++. =.+.++++++++|+++|..+.++++++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~sSm~~D~----~~gr~t---Eid~---i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 234 LRDDVVEEIVKIFAGAPGDMKTSMLRDM----EKGRPL---EIDH---LQGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred CChhHHHHHHHHHhccCCCCCcHHHHHH----HcCCcc---cHHH---HHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 33444433221 1 111111111 011001 0111 124789999999999999999999987654
No 69
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-13 Score=142.27 Aligned_cols=247 Identities=15% Similarity=0.145 Sum_probs=181.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc-------------------CCcccCCHHHHhccCcE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV-------------------GGLIANSPAEAAKDVGV 205 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~-------------------G~~~~~s~~e~~~~aDv 205 (988)
+||.-||+|++|.+....++-+- .+|++.|.+..++...+.. +.-+.++.+.+++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 69999999999999988887654 4799999999888775542 23367899999999999
Q ss_pred EEEEcCChH-----------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceE--ecCcccCCc
Q 001973 206 LVIMVTNEA-----------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL--VDAPVSGGV 272 (988)
Q Consensus 206 V~l~vp~~~-----------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~--ldapv~g~~ 272 (988)
||++|.+|. +++.+-....-+.+.....++++..||++...++.+...+....+|++| ++.|.+-..
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae 161 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE 161 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence 999998874 2222211113455556678999999999999999999988643345544 555543322
Q ss_pred ccccC---CCeEEEEeCCH-----HHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001973 273 KRASM---GELTIMAAGTE-----ESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLG 344 (988)
Q Consensus 273 ~~a~~---g~l~~~~gg~~-----~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~G 344 (988)
..+.. ..-.+++||.+ .+.+.+..+++.+-.+-..++.+.-+++.-|++.|.+.+--+..++-+.++|++.|
T Consensus 162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg 241 (481)
T KOG2666|consen 162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG 241 (481)
T ss_pred cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 22111 11237777753 35666677777776443333468899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCC
Q 001973 345 LNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVP 402 (988)
Q Consensus 345 id~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~ 402 (988)
.|..++...++..+. .++.+++. ..||.-+++.||+-.++-+++.+|+|
T Consensus 242 adv~eva~avg~d~r-------ig~kfl~a--svgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 242 ADVSEVAYAVGTDSR-------IGSKFLNA--SVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred CCHHHHHHHhccccc-------ccHHHhhc--ccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 999999887765432 22334433 34677889999999999999999876
No 70
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.54 E-value=3.1e-13 Score=151.12 Aligned_cols=252 Identities=15% Similarity=0.155 Sum_probs=162.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----------cCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----------ANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----------~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|||+|||+|.||+.+|..|+++||+|++|+|++++.+.+.+.|... ++++.++ +.+|+||+|+|...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~- 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ- 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc-
Confidence 5899999999999999999999999999999999988888777532 4556555 89999999999765
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccC--CcccccCCCeEEEEeC---CH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSG--GVKRASMGELTIMAAG---TE 288 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g--~~~~a~~g~l~~~~gg---~~ 288 (988)
++.++ +.+.+.+.++++||.+.++ .+..+.+.+.+.... .+..+..+-..+ .......+. +.+|. ..
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~ 152 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGES 152 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCc
Confidence 67777 5677777777788877664 333344444443210 011111111111 111222233 33332 22
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC-
Q 001973 289 ESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLGLN- 346 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~Gid- 346 (988)
+..+.+.++|+..+.++.. ..++-...|.|++.|...+ .+...+.|+..++++.|++
T Consensus 153 ~~~~~l~~~l~~~~~~~~~-~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEW-SPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred HHHHHHHHHHHhcCCCCCC-ChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3467788888888877655 5788889999998775432 3445688999999999975
Q ss_pred -HHHHHHHHHhcC-----CCcccccc-ccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 347 -TRVLFNIITDSG-----GSSWMFEN-RVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 347 -~~~~~~~l~~~~-----~~s~~~~~-~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.+.+.+.+.... ..|.++.. ...+...-++ =.++++++++++|+++|..+.++++++...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~-----------i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 232 SVEEVREYVRQVIQKTAANTSSMLQDLEAGRPTEIDA-----------IVGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred ChHHHHHHHHHHhhccCCCCchHHHHHHcCCCcccch-----------hccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 344444333211 11111111 1111111111 1257899999999999999999998876654
No 71
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=5.9e-13 Score=145.95 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=162.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC---CeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN---FTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
||||+|||+|.||..++..|.++| ++|.+|||++++.+.+.+. |+...++..+++.++|+||+|+|... +++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~~~v~- 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-MEEVL- 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-HHHHH-
Confidence 368999999999999999999999 7899999999999888875 77788888888999999999999754 77777
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe--CCHHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA--GTEESLKSTGSVLS 299 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll~ 299 (988)
+.+.+.+ +++||.+++..+. ..+.+.++ .+.+++.+ +...|.....+...+..+ ++++.++.++.+|+
T Consensus 80 --~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~---~~~~iv~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~ 149 (267)
T PRK11880 80 --SELKGQL--DKLVVSIAAGVTL--ARLERLLG---ADLPVVRA-MPNTPALVGAGMTALTANALVSAEDRELVENLLS 149 (267)
T ss_pred --HHHHhhc--CCEEEEecCCCCH--HHHHHhcC---CCCcEEEe-cCCchHHHcCceEEEecCCCCCHHHHHHHHHHHH
Confidence 4566655 5677777765543 23444443 23444443 112233334444334444 37889999999999
Q ss_pred hcCCeEEEEeCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccc--ccccc-CC
Q 001973 300 ALSEKLYVIKGGCGAGSGVK-MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFENR--VPHML-DN 374 (988)
Q Consensus 300 ~~g~~v~~~~g~~g~a~~~K-l~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~~--~~~~~-~~ 374 (988)
.+|..+ ++ .+...-...= +..+ .-+....++..+...+.+.|+++++..+++.... +...++... .+.-+ ..
T Consensus 150 ~lG~~~-~~-~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 226 (267)
T PRK11880 150 AFGKVV-WV-DDEKQMDAVTAVSGS-GPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDN 226 (267)
T ss_pred hCCeEE-EE-CChHhcchHHHHhcC-hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 999754 43 2222111111 1111 1112223344444557889999999888777653 221121110 11111 11
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 375 DYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 375 ~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
=.+|+.+ ....++..++.|++-.+.+++.+.++++.+-
T Consensus 227 v~tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~ 264 (267)
T PRK11880 227 VTSPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKEL 264 (267)
T ss_pred CCCCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 1123222 2455677788899999999999999988875
No 72
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=3e-13 Score=147.43 Aligned_cols=239 Identities=15% Similarity=0.083 Sum_probs=154.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCe---EEEEeCChhHHHHHHhc--CCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFT---VIGYDVYRPTLTKFQNV--GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~--G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||||||+|+||.+|++.|.+.|++ +.+|||++++.+++.+. +...++++.++++++|+||+|+| +..+.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4899999999999999999999864 58999999999888775 46778899999999999999999 56678887
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhc
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSAL 301 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~ 301 (988)
+.+ .+.++++||+++. +.+...+.+.+.. ....+...|. +..+.....+.++.++ +.++++|+.+
T Consensus 79 --~~l--~~~~~~~vis~~a--g~~~~~l~~~~~~--~~~~~r~~P~---~~~a~~~g~t~~~~~~----~~~~~l~~~l 143 (258)
T PRK06476 79 --RAL--RFRPGQTVISVIA--ATDRAALLEWIGH--DVKLVRAIPL---PFVAERKGVTAIYPPD----PFVAALFDAL 143 (258)
T ss_pred --HHh--ccCCCCEEEEECC--CCCHHHHHHHhCC--CCCEEEECCC---ChhhhCCCCeEecCCH----HHHHHHHHhc
Confidence 333 2467888887654 3445556665543 1234555665 2233333445555543 5789999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-Cccc-ccc--cccccc
Q 001973 302 SEKLYVIKGGCGAGSGVKMANQL-----LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG-SSWM-FEN--RVPHML 372 (988)
Q Consensus 302 g~~v~~~~g~~g~a~~~Kl~~N~-----~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~-~s~~-~~~--~~~~~~ 372 (988)
|..++. ++. |..+++ ..+....++.++..++++.|+++++..+++..... ...+ ... ..|.-+
T Consensus 144 G~~~~~--~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l 215 (258)
T PRK06476 144 GTAVEC--DSE------EEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSAL 215 (258)
T ss_pred CCcEEE--CCh------HhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 987664 222 222222 33444457888889999999999999998876532 2222 111 111111
Q ss_pred CCC-CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 001973 373 DND-YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGS 417 (988)
Q Consensus 373 ~~~-~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~ 417 (988)
... .+|+.+. ...++..++.|+.-.+.+++...++++.
T Consensus 216 ~~~v~spgGtT-------~~gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 216 SREFSTKGGLN-------EQVLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred HHhCCCCCchH-------HHHHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 111 2344332 2334455566766556655555555443
No 73
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=6.1e-13 Score=145.28 Aligned_cols=251 Identities=15% Similarity=0.179 Sum_probs=159.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEEeCChhHHHHHHh-cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGYDVYRPTLTKFQN-VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~-~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+||+|||+|+||.+|+..|.++|+ +|++|||++++.+.+.+ .|+..+++..+++++||+||+|||+ +++++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 589999999999999999999885 69999999999988875 6877788898999999999999995 7799988
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSVLS 299 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~ 299 (988)
+++.+.++++++||+.-.+.+- ..+.+.+.. ..+++-. +-..+.....|...+..+. +++..+.++.+|+
T Consensus 81 --~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~---~~~vvR~-MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 81 --NQIKDQIKNDVIVVTIAAGKSI--KSTENEFDR---KLKVIRV-MPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred --HHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCC---CCcEEEE-CCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 5777778888899987654332 233444421 1122211 1122333444543333332 4566788999999
Q ss_pred hcCCeEEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCcccccc--ccccccCCC
Q 001973 300 ALSEKLYVIKG-GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFEN--RVPHMLDND 375 (988)
Q Consensus 300 ~~g~~v~~~~g-~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~--~~~~~~~~~ 375 (988)
.+|..+ .+.. ......++=-+.-.+.+.++..+. ..+.+.|++.++..+++.+.. |...++.. ..|.-+...
T Consensus 153 ~~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~---~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~ 228 (272)
T PRK12491 153 IFGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMA---DAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDM 228 (272)
T ss_pred cCCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 999864 4311 111122211112223333333333 448889999999999887754 22222211 111111111
Q ss_pred -CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 376 -YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 376 -~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.+|+.+. ...++..++.|+.--+.+++...++++.+
T Consensus 229 V~sPGGtT-------~~gl~~le~~~~~~~~~~av~aa~~r~~e 265 (272)
T PRK12491 229 VCSPGGTT-------IEAVATLEEKGLRTAIISAMKRCTQKSME 265 (272)
T ss_pred CCCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 2344432 23455566788888888888888777765
No 74
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.52 E-value=3.6e-14 Score=145.58 Aligned_cols=147 Identities=24% Similarity=0.333 Sum_probs=97.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------------CCcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------G~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|++|.++|..|+++||+|++||.++++++.+++. +..++++..+++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 699999999999999999999999999999999999998763 134678889999999999
Q ss_pred EEEcCChH---------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc-C---CCceEecCcccCCcc
Q 001973 207 VIMVTNEA---------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE-G---KDLKLVDAPVSGGVK 273 (988)
Q Consensus 207 ~l~vp~~~---------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~-~---~g~~~ldapv~g~~~ 273 (988)
|+|||+|. .++.++ +.+.++++++++||..||+.|++++++...+-++ . .++++..+|.+-.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 99999874 355555 6888999999999999999999999665444332 2 245667777554443
Q ss_pred cccC---CCeEEEEeCCHHHHH-HHHH
Q 001973 274 RASM---GELTIMAAGTEESLK-STGS 296 (988)
Q Consensus 274 ~a~~---g~l~~~~gg~~~~~~-~~~~ 296 (988)
.+.. ..-.++.|.+++..+ .+++
T Consensus 158 ~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 158 RAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp SHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 3221 112355565554333 4444
No 75
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.52 E-value=5.2e-13 Score=149.63 Aligned_cols=258 Identities=14% Similarity=0.082 Sum_probs=159.3
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------------cCCHHHHhccCcEEEEE
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------------ANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------------~~s~~e~~~~aDvV~l~ 209 (988)
+++.|||+|||+|.||+.+|..|+++||+|++|.|++. +.+...|... ..+..+....+|+||+|
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEE
Confidence 45568999999999999999999999999999999863 4455555321 11122345689999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCc--ccccCCCeEEE-E
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGV--KRASMGELTIM-A 284 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~--~~a~~g~l~~~-~ 284 (988)
||..+ +.+++ +.+.+.+.++.+|+...++ .+..+.+.+.++... .++.++.+...+.. .....|.+.+- .
T Consensus 80 vK~~~-~~~~~---~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 80 LKTTA-NALLA---PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred ecCCC-hHhHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 99876 45565 4566667777777766554 344455666554310 12222222222211 11222332211 1
Q ss_pred eC-C-----HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 001973 285 AG-T-----EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAM 337 (988)
Q Consensus 285 gg-~-----~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~ 337 (988)
.+ + .+..+.+..+|+..+.++.. ..++....|.|++.|...+ .....+.|+.
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~-~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~ 233 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDSQA-MPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI 233 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCcee-CchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence 22 2 35667788889888877665 5899999999998775433 4445588999
Q ss_pred HHHHHcCCC--H---HHHHHHHHhcCC-CccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 001973 338 AFGARLGLN--T---RVLFNIITDSGG-SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQ 411 (988)
Q Consensus 338 ~la~~~Gid--~---~~~~~~l~~~~~-~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~ 411 (988)
.++++.|++ . +.+.++...... .|.++. |+..+.. .++-.=.+.++++++++|+++|..+.++.
T Consensus 234 ~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~q---------D~~~gr~-tEid~i~G~vv~~a~~~Gi~~P~~~~l~~ 303 (313)
T PRK06249 234 QGAAACGHTLPEGYADHMLAVTERMPDYRPSMYH---------DFEEGRP-LELEAIYANPLAAARAAGCAMPRVEMLYQ 303 (313)
T ss_pred HHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHH---------HHHCCCc-ccHHHHhhHHHHHHHHhCCCCcHHHHHHH
Confidence 999999986 2 222332222110 111111 1111100 00111135889999999999999999999
Q ss_pred HHHHHHH
Q 001973 412 LFLAGSA 418 (988)
Q Consensus 412 ~~~~a~~ 418 (988)
+++....
T Consensus 304 ~l~~~e~ 310 (313)
T PRK06249 304 ALEFLDR 310 (313)
T ss_pred HHHHHHh
Confidence 8876543
No 76
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.9e-14 Score=151.86 Aligned_cols=64 Identities=39% Similarity=0.518 Sum_probs=60.5
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~~~ 982 (988)
||||++++||++|++++||||||||+|+|+++||++||++.+||||||+|+++.+|+| .+++..
T Consensus 1 m~lv~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~ 65 (286)
T COG0191 1 MALVSMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAH 65 (286)
T ss_pred CccccHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999998 565543
No 77
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.51 E-value=1e-12 Score=145.25 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=133.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHH-----------HHHhcC-------------CcccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLT-----------KFQNVG-------------GLIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~-----------~l~~~G-------------~~~~~s~~e~~~ 201 (988)
++||+|||+|.||..+|..|+++|++|++||+++++++ .+.+.| +..+++.+ .++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 35899999999999999999999999999999999875 334444 23356665 478
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCcccccCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRASMG 278 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~~g 278 (988)
+||+||+|+|....++..++ +.+.+.++++++++. +|++.... .+++.+.. +..+.||.. +++..... ...+
T Consensus 82 ~aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s-~ts~~~~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g 156 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIF--AQLDEIAKPEAILAT-NTSSLSIT-ELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG 156 (282)
T ss_pred cCCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEE-CCCCCCHH-HHHHhhCCCcceEEeeccCCcccCccEE-EeCC
Confidence 99999999988766664333 567788888887743 33333332 55555532 223556655 33333332 1111
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 001973 279 ELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG 358 (988)
Q Consensus 279 ~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~ 358 (988)
.+++++.++.+.++++.+|+.++++....| .+.|- +....++|++.+.+..-.+++++..++..+.
T Consensus 157 -----~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~R---i~~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 157 -----LATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNR---ILIPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 246899999999999999999887522333 23332 2345689999998876678999988876544
Q ss_pred C
Q 001973 359 G 359 (988)
Q Consensus 359 ~ 359 (988)
+
T Consensus 223 g 223 (282)
T PRK05808 223 N 223 (282)
T ss_pred C
Confidence 3
No 78
>PRK07680 late competence protein ComER; Validated
Probab=99.49 E-value=1.1e-12 Score=144.07 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=133.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEEeCChhHHHHHHhc--CCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGYDVYRPTLTKFQNV--GGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~--G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
|+|+|||+|+||.+++..|.++|+ +|++|||++++.+.+.+. |+..+.++.+++..+|+||+|+|+ ..+++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 489999999999999999999994 799999999998887764 677788899989999999999985 5588887
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe--CCHHHHHHHHHHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA--GTEESLKSTGSVL 298 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll 298 (988)
+++.+++.++++||++++.. ....+.+.+.. ..++++.+ .+..+..|...++.+ .+++.++.++++|
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~--~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll 148 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPC--QVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERLF 148 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC--CEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHHH
Confidence 57778888889999998754 34455555432 22334432 233455677555555 3567788999999
Q ss_pred HhcCCeEEEEeCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 299 SALSEKLYVIKGGCGAGSG-VKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 299 ~~~g~~v~~~~g~~g~a~~-~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+.+|..+ ++..+...+.. +=-+.-.+...++.++.++. .++.|+++++..+++...
T Consensus 149 ~~~G~~~-~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 149 SNISTPL-VIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HcCCCEE-EEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 9999654 44322111110 00011123333333333332 234899999988877665
No 79
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.47 E-value=5.7e-13 Score=148.28 Aligned_cols=247 Identities=17% Similarity=0.090 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhH-------HHH-----------HHhcC-------------CcccCC--HHHHhccC
Q 001973 157 MGFGMATHLLRSNFTVIGYDVYRPT-------LTK-----------FQNVG-------------GLIANS--PAEAAKDV 203 (988)
Q Consensus 157 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~-----------l~~~G-------------~~~~~s--~~e~~~~a 203 (988)
||..||..++.+|++|++||++++. ++. +.+.| ++.+++ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 111 22222 223433 67889999
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCeE
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
|+||.|+|...+++..++ .++.+.+++++++ +||+++-...++++.+. ++..|.||++.|..-.......+.
T Consensus 81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~-- 154 (314)
T PRK08269 81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD-- 154 (314)
T ss_pred CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC--
Confidence 999999999999999887 4577888888888 46666666667777663 233578999888322221111111
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSS 361 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s 361 (988)
+++++.++++.+++..+|++++++ ++.+ + +++..+...+++|++.++++.|++++++.+++..+.+..
T Consensus 155 ---~t~~e~~~~~~~ll~~lGk~~v~v-~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~ 222 (314)
T PRK08269 155 ---ATDPAVVDRLAALLERIGKVPVVC-GPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLR 222 (314)
T ss_pred ---CCCHHHHHHHHHHHHHcCCcEEEe-cCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC
Confidence 578999999999999999999885 6544 2 234455677899999999999999999999988766533
Q ss_pred cccccccccccCCCCCCCchhhHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHcCCCCCChH
Q 001973 362 WMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLS-QRVPLHISTIAHQLFLAGSAAGWGRQDDA 427 (988)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~-~gi~~pi~~a~~~~~~~a~~~g~g~~d~~ 427 (988)
+... +|- .--|+ ..++....-++.+.+...+ .--+.|++....+--+...+.|.|.+||.
T Consensus 223 ~~~~--Gpf-~~~D~---~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~ 283 (314)
T PRK08269 223 FAVL--GLL-EFIDW---GGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYA 283 (314)
T ss_pred ccCc--CHH-HHHHh---hhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCC
Confidence 2110 110 00011 1122222222222221111 11234555555555555677888888884
No 80
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=99.47 E-value=6.3e-14 Score=151.61 Aligned_cols=64 Identities=38% Similarity=0.474 Sum_probs=60.9
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.+++..
T Consensus 1 mmlv~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~ 64 (284)
T PRK12737 1 MYIISTKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVA 64 (284)
T ss_pred CCCCcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999875543
No 81
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=99.47 E-value=7e-14 Score=150.97 Aligned_cols=64 Identities=38% Similarity=0.474 Sum_probs=60.9
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|+||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+.+.+..
T Consensus 1 M~lv~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~ 64 (286)
T PRK12738 1 MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYA 64 (286)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876543
No 82
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=99.46 E-value=7.2e-14 Score=150.94 Aligned_cols=63 Identities=37% Similarity=0.501 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.+++.
T Consensus 1 Mmlv~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~ 63 (284)
T PRK09195 1 MYLVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLL 63 (284)
T ss_pred CCCCcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999987553
No 83
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.46 E-value=2e-12 Score=144.62 Aligned_cols=171 Identities=18% Similarity=0.288 Sum_probs=129.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcCC--cccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVGG--LIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G~--~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
..++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.|. ..++++.++++++|+||+|+|... ...++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH
Confidence 34699999999999999999999995 89999999999888888775 345678888899999999999865 56666
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcc-ccc-------CCCeEEEE---eCCH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVK-RAS-------MGELTIMA---AGTE 288 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~-~a~-------~g~l~~~~---gg~~ 288 (988)
+.+.+.++++.+|+|++++.+...+.+.+.+. .+++|+.+ |+.|++. +.. .|..++++ ++++
T Consensus 84 ---~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~---~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~ 157 (307)
T PRK07502 84 ---AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP---EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDP 157 (307)
T ss_pred ---HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC---CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCH
Confidence 46667788999999999988777766655543 35678887 8887542 121 23333333 5678
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHH
Q 001973 289 ESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQ 323 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N 323 (988)
+.++.++++++.+|.+++++ ++-.....+-++..
T Consensus 158 ~~~~~~~~l~~~lG~~~~~~-~~~~hD~~~A~~s~ 191 (307)
T PRK07502 158 AAVARLTAFWRALGARVEEM-DPEHHDLVLAITSH 191 (307)
T ss_pred HHHHHHHHHHHHcCCEEEEc-CHHHHhHHHHHHhh
Confidence 89999999999999998874 44444444444333
No 84
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=99.46 E-value=9.3e-14 Score=150.30 Aligned_cols=63 Identities=49% Similarity=0.660 Sum_probs=60.6
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
||||||++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.+++.
T Consensus 1 Mmlv~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~ 63 (284)
T PRK12857 1 MMLVTVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYIS 63 (284)
T ss_pred CCCCcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999987664
No 85
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=99.44 E-value=1.3e-13 Score=149.06 Aligned_cols=63 Identities=43% Similarity=0.574 Sum_probs=59.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcc-cCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKV-QYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~-~~~~~~~ 981 (988)
||||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++| .|++.+.
T Consensus 1 M~lv~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~ 64 (285)
T PRK07709 1 MPLVSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVV 64 (285)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999 7876553
No 86
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=99.44 E-value=1.5e-13 Score=149.21 Aligned_cols=63 Identities=37% Similarity=0.546 Sum_probs=59.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcc-cCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKV-QYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~-~~~~~~~ 981 (988)
||||++++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+| .|++.+.
T Consensus 1 mmlv~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~ 64 (288)
T TIGR00167 1 MMLVDVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAIS 64 (288)
T ss_pred CCCccHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999 7877543
No 87
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.44 E-value=6.8e-12 Score=143.02 Aligned_cols=194 Identities=18% Similarity=0.220 Sum_probs=137.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc----ccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL----IANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~----~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++|+|||+|.||.+||..|.++|++|.+|+++++..+.....+.. ..+++.+++++||+||+|+|... +..++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~-~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDA-TAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHH-HHHHH--
Confidence 379999999999999999999999999999988776555444432 24567888999999999999864 77777
Q ss_pred ccchhh-hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCcc--------cccCCCeEEEEe---CCHH
Q 001973 223 DLGAVS-ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVK--------RASMGELTIMAA---GTEE 289 (988)
Q Consensus 223 ~~~i~~-~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~--------~a~~g~l~~~~g---g~~~ 289 (988)
+++.+ .++++.+|.|.++++......+.+.+. .+.+|+. .|+.|++. ..-.+..++++. ++++
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~---~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~ 153 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALLG---DLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPD 153 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcC---CCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHH
Confidence 56666 478899999999999887777765532 3567887 48877631 122344455554 4788
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 290 SLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 290 ~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
.++.++++++.+|..++++ ++-.....+.++..+-. ++++++ +...+.+.+....+..
T Consensus 154 ~~~~v~~l~~~lGa~~v~~-~~~~HD~~~A~vshlPh-----~ia~al--~~~~~~~~~~~~~la~ 211 (359)
T PRK06545 154 AVAELKDLLSGTGAKFVVL-DAEEHDRAVALVSHLPH-----ILASSL--AARLAGEHPLALRLAA 211 (359)
T ss_pred HHHHHHHHHHHcCCEEEEC-CHHHHhHHHhHhccHHH-----HHHHHH--HHhhccCchHHHhhhc
Confidence 9999999999999988775 44444455544443332 223333 5556666555555444
No 88
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=99.44 E-value=1.6e-13 Score=149.12 Aligned_cols=63 Identities=40% Similarity=0.526 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|+||||++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+.+++.
T Consensus 1 m~lv~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~ 63 (281)
T PRK06806 1 MPLVQMKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIG 63 (281)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHH
Confidence 679999999999999999999999999999999999999999999999999999999987654
No 89
>PRK06801 hypothetical protein; Provisional
Probab=99.43 E-value=1.8e-13 Score=148.38 Aligned_cols=63 Identities=35% Similarity=0.461 Sum_probs=60.1
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|+||||++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.+++.+.
T Consensus 1 M~lv~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~ 63 (286)
T PRK06801 1 MALISLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLV 63 (286)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999977543
No 90
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=99.43 E-value=1.9e-13 Score=150.37 Aligned_cols=64 Identities=34% Similarity=0.427 Sum_probs=60.9
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.+++..
T Consensus 1 M~lv~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~ 64 (347)
T PRK13399 1 MALITLRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRH 64 (347)
T ss_pred CCCccHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876543
No 91
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=99.43 E-value=1.9e-13 Score=150.08 Aligned_cols=64 Identities=36% Similarity=0.458 Sum_probs=60.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|+||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.+++..
T Consensus 1 M~lv~~k~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~ 64 (347)
T PRK09196 1 MALISLRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRH 64 (347)
T ss_pred CCCCcHHHHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999876643
No 92
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=99.42 E-value=2.4e-13 Score=146.90 Aligned_cols=62 Identities=34% Similarity=0.535 Sum_probs=58.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLV 980 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~ 980 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.+ ++.+
T Consensus 1 M~lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~ 63 (286)
T PRK08610 1 MPLVSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTV 63 (286)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHH
Confidence 6899999999999999999999999999999999999999999999999999999976 6644
No 93
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=99.41 E-value=2.6e-13 Score=147.04 Aligned_cols=63 Identities=35% Similarity=0.504 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 920 ~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|||+|++||++|++++|||||||++|+|+++|+++|||+++||||||+++++++|.|.+++..
T Consensus 1 Mlv~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~ 63 (307)
T PRK05835 1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVG 63 (307)
T ss_pred CCCCHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999876543
No 94
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=99.41 E-value=3e-13 Score=147.80 Aligned_cols=62 Identities=29% Similarity=0.441 Sum_probs=59.0
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLV 980 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~ 980 (988)
|+||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|++ .+.+
T Consensus 1 m~lv~~~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~ 63 (293)
T PRK07315 1 MAIVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVC 63 (293)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHH
Confidence 6899999999999999999999999999999999999999999999999999999977 6644
No 95
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=99.41 E-value=3.2e-13 Score=145.40 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=60.4
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.+.+.
T Consensus 1 M~lv~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~ 63 (283)
T PRK07998 1 MPLVNGRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIY 63 (283)
T ss_pred CCCCcHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987654
No 96
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=99.40 E-value=3.7e-13 Score=146.34 Aligned_cols=60 Identities=37% Similarity=0.540 Sum_probs=58.2
Q ss_pred CcccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCH
Q 001973 918 PVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYI 977 (988)
Q Consensus 918 ~~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~ 977 (988)
.|+|||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.
T Consensus 6 ~m~lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~ 65 (321)
T PRK07084 6 ELGLVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANA 65 (321)
T ss_pred hccccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc
Confidence 488999999999999999999999999999999999999999999999999999999994
No 97
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.39 E-value=2.1e-11 Score=130.33 Aligned_cols=250 Identities=19% Similarity=0.219 Sum_probs=158.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCC----CeEEEEeCChhHHHHHH-hcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYRPTLTKFQ-NVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~-~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||||||+|+||.+|+..|.++| .+|++.||++++.+.+. +.|...+++..+++.++|+||+||+. +.+++++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP-q~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP-QDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh-HhHHHHH-
Confidence 69999999999999999999999 68999999999997554 45666678888999999999999985 6688888
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe--CCHHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA--GTEESLKSTGSVLS 299 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll~ 299 (988)
..+.+ ..++++||......+ ...+.+++. +.+++-+ +-..+.....|...+..+ .+++..+.+..+|+
T Consensus 80 --~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~----~~~vvR~-MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~ 149 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAAGVS--IETLERLLG----GLRVVRV-MPNTPALVGAGVTAISANANVSEEDKAFVEALLS 149 (266)
T ss_pred --HHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC----CCceEEe-CCChHHHHcCcceeeecCccCCHHHHHHHHHHHH
Confidence 46655 678888887654433 233444443 1233322 112233445555444443 25677889999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcC-CCcccccccc--ccccCCC
Q 001973 300 ALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMA-FGARLGLNTRVLFNIITDSG-GSSWMFENRV--PHMLDND 375 (988)
Q Consensus 300 ~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~-la~~~Gid~~~~~~~l~~~~-~~s~~~~~~~--~~~~~~~ 375 (988)
.+|..+.+ . +--.-.+.-+... .-.++..+.|++. -+.+.|++.++..+++.+.. +...++.... |..+...
T Consensus 150 ~~G~v~~v-~-E~~~da~TaisGS--gPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~ 225 (266)
T COG0345 150 AVGKVVEV-E-ESLMDAVTALSGS--GPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQ 225 (266)
T ss_pred hcCCeEEe-c-hHHhhHHHHHhcC--CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 99985543 2 2111111111111 0122333455553 38999999999999888764 3333332222 2223333
Q ss_pred -CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 376 -YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 376 -~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
.+|+.+....++++ ++.|+.--+.+++.+.++++.+-
T Consensus 226 VtSPGGtTiagl~~l-------e~~g~~~~v~~av~aa~~r~~el 263 (266)
T COG0345 226 VTSPGGTTIAGLRVL-------EEDGFRGAVIEAVEAAYKRSEEL 263 (266)
T ss_pred CcCCCchHHHHHHHH-------HHhChHHHHHHHHHHHHHHHHHh
Confidence 34555544433333 37777777788888777777654
No 98
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=99.38 E-value=5.7e-13 Score=143.87 Aligned_cols=61 Identities=44% Similarity=0.563 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+.+.+.
T Consensus 1 lv~~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~ 61 (282)
T TIGR01858 1 IVSTKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIV 61 (282)
T ss_pred CCcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999987543
No 99
>PLN02256 arogenate dehydrogenase
Probab=99.38 E-value=4.1e-11 Score=132.64 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=117.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHcc
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
+..|+|+|||+|.||..+|..|.+.|++|++||+++.. +.....|+...++..+++ .++|+||+|+|.. .+.+++
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl-- 109 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVL-- 109 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHH--
Confidence 34579999999999999999999999999999999743 444556777777888876 4799999999975 467777
Q ss_pred ccch-hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCccc--ccCCCeEEEE-------eCCHHHH
Q 001973 223 DLGA-VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKR--ASMGELTIMA-------AGTEESL 291 (988)
Q Consensus 223 ~~~i-~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~--a~~g~l~~~~-------gg~~~~~ 291 (988)
+.+ .+.++++++|+|.++++-.....+.+.++. +..|+.+ |+.|.... ...+.-.+.. ..+++.+
T Consensus 110 -~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 110 -RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred -HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 455 566788999999999877666666665542 4566665 77766533 1222222222 1266788
Q ss_pred HHHHHHHHhcCCeEEEE
Q 001973 292 KSTGSVLSALSEKLYVI 308 (988)
Q Consensus 292 ~~~~~ll~~~g~~v~~~ 308 (988)
+.++.+++.+|.+++.+
T Consensus 186 ~~l~~l~~~lGa~v~~~ 202 (304)
T PLN02256 186 ERFLDIFEEEGCRMVEM 202 (304)
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 99999999999999886
No 100
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=99.37 E-value=7.1e-13 Score=145.35 Aligned_cols=62 Identities=34% Similarity=0.416 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
||||++||++|++++||||||||+|+|+++|+++|||+++||||||+++++.+|+|.+++..
T Consensus 1 lv~~k~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~ 62 (347)
T TIGR01521 1 LISMRQLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRH 62 (347)
T ss_pred CCCHHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999876543
No 101
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=99.37 E-value=3.3e-13 Score=146.85 Aligned_cols=62 Identities=45% Similarity=0.611 Sum_probs=55.9
Q ss_pred ccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 920 ~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|+|.+++.
T Consensus 1 Mlv~~~~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~ 62 (287)
T PF01116_consen 1 MLVNMKELLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLA 62 (287)
T ss_dssp -BHHHHHHHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999987654
No 102
>PLN02712 arogenate dehydrogenase
Probab=99.36 E-value=4.7e-11 Score=145.16 Aligned_cols=179 Identities=14% Similarity=0.214 Sum_probs=123.4
Q ss_pred cccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHH
Q 001973 118 GVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPA 197 (988)
Q Consensus 118 g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~ 197 (988)
..+..++.+++.+-.. ... .......|||||||+|.||..+|++|.+.|++|++|||+... +...+.|+...+++.
T Consensus 344 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~ 419 (667)
T PLN02712 344 MMRFQGVAQKYEYNAQ-VSG--CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDAD 419 (667)
T ss_pred hhhhhcccCCCCccch-hhh--ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHH
Confidence 3445555566554331 111 112234579999999999999999999999999999999654 555567877778888
Q ss_pred HHhc-cCcEEEEEcCChHHHHHHHccccchhh-hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCccc
Q 001973 198 EAAK-DVGVLVIMVTNEAQAESVLYGDLGAVS-ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKR 274 (988)
Q Consensus 198 e~~~-~aDvV~l~vp~~~~~~~vl~~~~~i~~-~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~ 274 (988)
+++. .+|+||+|+|. ..+..++ +.+.. .++++++|+|+++++-.....+.+.++ .+..|+ ..|++|....
T Consensus 420 el~~~~aDvVILavP~-~~~~~vi---~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~---~~~~~v~~HPm~G~e~~ 492 (667)
T PLN02712 420 DLCEEHPEVILLCTSI-LSTEKVL---KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP---QDFDILCTHPMFGPESG 492 (667)
T ss_pred HHHhcCCCEEEECCCh-HHHHHHH---HHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc---CCCceEeeCCCCCcccc
Confidence 8775 58999999996 4567766 34443 577899999999998545544444443 356787 6698887754
Q ss_pred ccCC--CeE-----EEEeCCHHHH---HHHHHHHHhcCCeEEEE
Q 001973 275 ASMG--ELT-----IMAAGTEESL---KSTGSVLSALSEKLYVI 308 (988)
Q Consensus 275 a~~g--~l~-----~~~gg~~~~~---~~~~~ll~~~g~~v~~~ 308 (988)
..| .+. .+++++.+.. +.+..+++.+|.+++.+
T Consensus 493 -~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m 535 (667)
T PLN02712 493 -KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM 535 (667)
T ss_pred -ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence 112 112 3345555444 45568899999998886
No 103
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.36 E-value=2.5e-11 Score=135.27 Aligned_cols=252 Identities=18% Similarity=0.139 Sum_probs=159.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCccc-----------CCHHHHhccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIA-----------NSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~-----------~s~~e~~~~aDvV~l~vp~~ 213 (988)
.|||+|||+|.||+.+|..|++.|++|++++|++++++.+++. |.... ....+.....|+||+|++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 3699999999999999999999999999999998888888764 43221 11112235789999999987
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCccccc------CCCeEEEEeC-
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS------MGELTIMAAG- 286 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~------~g~l~~~~gg- 286 (988)
. +.+++ +.+.+.+.+++.|+-+.++. +..+.+.+.++.. +.+.+-+..+..... .+.-.+.+|.
T Consensus 82 ~-~~~al---~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~----~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~ 152 (305)
T PRK05708 82 D-AEPAV---ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHA----RCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP 152 (305)
T ss_pred h-HHHHH---HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCC----cEEEEEeeeceecCCCCEEEEeceEEEEEcCC
Confidence 5 66666 57788888888887776553 3333455554321 222222221111111 1221233442
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--
Q 001973 287 TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG------------------VHIASAAEAMAFGARLGLN-- 346 (988)
Q Consensus 287 ~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~------------------~~~~~~~Ea~~la~~~Gid-- 346 (988)
+.+..+++.++|...+.++.+ ..++-...|.|++.|...+ .+...+.|...++++.|++
T Consensus 153 ~~~~~~~l~~~l~~ag~~~~~-~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~ 231 (305)
T PRK05708 153 RNPTAPAWLDDLREAGIPHEW-TVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAA 231 (305)
T ss_pred CCcchHHHHHHHHhcCCCCcc-CHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 334556777888877766554 5788899999998876433 3455688999999999975
Q ss_pred HHHHHHHHH----hcC-CCcccccc-ccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 347 TRVLFNIIT----DSG-GSSWMFEN-RVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 347 ~~~~~~~l~----~~~-~~s~~~~~-~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.+.+.+.+. ... ..|.++.. ...+-..-++. .+.++++++++|+++|..+.+++.++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~sSM~qD~~~gR~tEid~i-----------~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~ 298 (305)
T PRK05708 232 AANLHEEVQRVIQATAANYSSMYQDVRAGRRTEISYL-----------LGYACRAADRHGLPLPRLQHLQQRLVAHLR 298 (305)
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHcCCceeehhh-----------hhHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 232333222 111 11111111 11111111111 258899999999999999999988877654
No 104
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.36 E-value=3.7e-11 Score=133.16 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=171.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc------------cCCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI------------ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~------------~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|||.|+|+|.||+.++..|+++|++|+++.|++. ++++++.|... .....+....+|+||+++++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 5999999999999999999999999999998877 88888876532 2233455668999999999866
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccC--------CCeE--EEE
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASM--------GELT--IMA 284 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~--------g~l~--~~~ 284 (988)
+++++ ..+.+.+.+.+.|+-..++. +..+.+.+.++.. +++.+-+..+...... |... .+.
T Consensus 80 -~~~al---~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~----~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~ 150 (307)
T COG1893 80 -LEEAL---PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKE----TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELR 150 (307)
T ss_pred -HHHHH---HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcc----eEEEEEeeeeeEecCCceEEEecCCcEEEccCC
Confidence 77777 67888888887777666553 4444666665542 3333322222222221 2211 222
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHc
Q 001973 285 AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARL 343 (988)
Q Consensus 285 gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~ 343 (988)
++.++.++.+.++|+..+.++.+ ..++-...|.|++.|+..+ ++...+.|....+.+.
T Consensus 151 ~~~~~~~~~i~~~~~~a~~~~~~-~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~ 229 (307)
T COG1893 151 GGRDELVKALAELFKEAGLEVEL-HPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE 229 (307)
T ss_pred CCchHHHHHHHHHHHhCCCCeEE-cHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence 34557888888999888888776 4789999999998887665 4455678999999999
Q ss_pred C--CCH---HHHHHHHHhc--CCCcccccccc-ccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 344 G--LNT---RVLFNIITDS--GGSSWMFENRV-PHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 344 G--id~---~~~~~~l~~~--~~~s~~~~~~~-~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
| ++. +.+....... ...|.+..... .+...-|+. .+.+++.|+++|+++|..+.++++++.
T Consensus 230 g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i-----------~G~vv~~a~~~gi~~P~~~~L~~lvk~ 298 (307)
T COG1893 230 GVELPEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAI-----------NGAVVRLAKKHGLATPVNDTLYALLKA 298 (307)
T ss_pred cCCCCHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHH-----------hhHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9 455 3444444433 12222222221 122222222 258899999999999999999999987
Q ss_pred HHHc
Q 001973 416 GSAA 419 (988)
Q Consensus 416 a~~~ 419 (988)
....
T Consensus 299 ~e~~ 302 (307)
T COG1893 299 KEAE 302 (307)
T ss_pred HHHh
Confidence 7653
No 105
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.34 E-value=4.3e-11 Score=130.35 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=164.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hcC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ-----------NVG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~~ 202 (988)
+||+|||.|.||..||..++..|++|+++|++++.+++.. +.| ++.++++. ++++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 6999999999999999999998899999999977655432 222 22344444 6889
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEE
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTI 282 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~ 282 (988)
||+|+-+++...+++.-++ ..+-..++++.++-..|++-|-+...-.-.-+++..|.||.+.|..-. ++-
T Consensus 83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~--------LVE 152 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMP--------LVE 152 (307)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcce--------eEE
Confidence 9999999999988877665 566677777777766555444443222222233344677776542222 333
Q ss_pred EEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 283 MAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 283 ~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
++. .+++.++.+..+.+.+++.++...+.+| ++.|-+ ....+.|+..+......+++++..++..+.+
T Consensus 153 vI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRi---l~~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 153 VIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRL---LAALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 333 3689999999999999987544223344 334433 3456899999999888999999999987655
Q ss_pred CccccccccccccCCCCCCCchhhHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 001973 360 SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECL--SQRVPLHISTIAHQLFLAGSAAGWGRQDDAA 428 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~--~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a 428 (988)
.. .+| +...|+.+ ++.+.+=+..+.+... ..-.+.|+.+...+.-+...+.|.|.+||..
T Consensus 224 ~p-----mGp-f~l~D~~G---lD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 224 LP-----MGP-FELADLIG---LDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred CC-----ccH-HHHHHHHh---HHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 43 111 11111221 3344333444433222 1123456777777777777888888888876
No 106
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.33 E-value=8.9e-11 Score=127.93 Aligned_cols=246 Identities=19% Similarity=0.171 Sum_probs=151.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC----CeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+.|||+|||+|+||.+|+..|.++| .+++++||++++. +...+.++.++++++|+||+|+|. .++++++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl 74 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVL 74 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHH
Confidence 3469999999999999999999987 2599999987652 344567888888999999999985 5588888
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC---CHHHHHHHHHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG---TEESLKSTGSV 297 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~l 297 (988)
+++.+++.++.+|.++++++.+..+.+ +.....-+++.. +.|.....+. +.+..+ +++..+.++.+
T Consensus 75 ---~~i~~~l~~~~iIS~~aGi~~~~l~~~---~~~~~~vvr~mP----n~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l 143 (260)
T PTZ00431 75 ---LEIKPYLGSKLLISICGGLNLKTLEEM---VGVEAKIVRVMP----NTPSLVGQGS-LVFCANNNVDSTDKKKVIDI 143 (260)
T ss_pred ---HHHHhhccCCEEEEEeCCccHHHHHHH---cCCCCeEEEECC----CchhHhccee-EEEEeCCCCCHHHHHHHHHH
Confidence 577777776677788888876665443 221101112221 2223333443 334332 45678899999
Q ss_pred HHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccc--ccc-ccC
Q 001973 298 LSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFENR--VPH-MLD 373 (988)
Q Consensus 298 l~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~~--~~~-~~~ 373 (988)
|+.+|..+..-.........+--+...+.+.++.++. ..+.+.|++.++..+++.+.. +...++... .|. +.+
T Consensus 144 ~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~---~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~ 220 (260)
T PTZ00431 144 FSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLI---DAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKD 220 (260)
T ss_pred HHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999986543111122222211122333333333333 448899999999999887764 333232221 121 122
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 374 NDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 374 ~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.=.+|+.+. ...++..++.|+.--+.+++...++++.+
T Consensus 221 ~v~spgG~T-------~~gl~~le~~g~~~~~~~a~~aa~~r~~~ 258 (260)
T PTZ00431 221 DVCSPGGIT-------IVGLYTLEKHAFKYTVMDAVESACQKSKS 258 (260)
T ss_pred hCCCCChHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHh
Confidence 223454442 23345556678777777777777777654
No 107
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.32 E-value=6e-11 Score=128.39 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC---e-EEEEeC-ChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF---T-VIGYDV-YRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
+.+||+|||+|.||.+++..|.++|+ + +++++| ++++.+.+.+. ++..++++.++++++|+||+|+|+.. .++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence 45799999999999999999998873 3 778887 47788877753 77777889999999999999999764 677
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCcccccCCCeEEEE--eCCHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKRASMGELTIMA--AGTEESLKSTG 295 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~a~~g~l~~~~--gg~~~~~~~~~ 295 (988)
++ +.+.+.++ +++||.++.+.... .+.+.+.. +..++ ..|- .+.....+...+.. ..+++..+.++
T Consensus 82 v~---~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~~---~~~v~r~~Pn--~a~~v~~g~~~~~~~~~~~~~~~~~v~ 150 (245)
T PRK07634 82 LL---AELSPLLS-NQLVVTVAAGIGPS--YLEERLPK---GTPVAWIMPN--TAAEIGKSISLYTMGQSVNETHKETLQ 150 (245)
T ss_pred HH---HHHHhhcc-CCEEEEECCCCCHH--HHHHHcCC---CCeEEEECCc--HHHHHhcCCeEEeeCCCCCHHHHHHHH
Confidence 77 45666555 67888776554333 24444432 22222 2231 12223334322322 35778889999
Q ss_pred HHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 296 SVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 296 ~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
.+|+.+|..++.-........++--+.-.+... ++..+...+.+.|+++++..+++...
T Consensus 151 ~lf~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~---~~~a~~~~~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 151 LILKGIGTSQLCTEEEVHQLTAVTGSAPAFLYY---FAESLIEATKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHHHhCCCEEEECHHHcchHHhhhcchHHHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999987753111111111111111122222 23334455899999999988877654
No 108
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.31 E-value=1e-10 Score=127.12 Aligned_cols=165 Identities=23% Similarity=0.282 Sum_probs=122.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh--hHHHHHHhcCCccc--CCH-HHHhccCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR--PTLTKFQNVGGLIA--NSP-AEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~G~~~~--~s~-~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+++|+|+|+|.||..+|+.|.++|+.|.+|+++. +..+...+.|+... .+. .+...++|+||+|||-.. +..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~-~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA-TEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH-HHHHH
Confidence 4699999999999999999999999887766554 44454444565432 333 677788999999999866 56666
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCc--ccccCCCeEEEEeC---CHHHHHHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGV--KRASMGELTIMAAG---TEESLKST 294 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~--~~a~~g~l~~~~gg---~~~~~~~~ 294 (988)
+++.+++++|.+|+|.++++-...+.+.+..++ .. +|+.+ |++|+. ..--.+..++++-+ +.+.+.++
T Consensus 82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~--~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG--DV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred ---HHhcccCCCCCEEEecccccHHHHHHHHHhccC--CC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 678889999999999999998888877776654 23 78877 888873 34445665555543 35688899
Q ss_pred HHHHHhcCCeEEEEeCCcchHHHH
Q 001973 295 GSVLSALSEKLYVIKGGCGAGSGV 318 (988)
Q Consensus 295 ~~ll~~~g~~v~~~~g~~g~a~~~ 318 (988)
..+++.+|.+++++ ..-..-..+
T Consensus 156 ~~~~~~~ga~~v~~-~~eeHD~~~ 178 (279)
T COG0287 156 KRLWEALGARLVEM-DAEEHDRVM 178 (279)
T ss_pred HHHHHHcCCEEEEc-ChHHHhHHH
Confidence 99999999998885 333333333
No 109
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=99.28 E-value=5.1e-12 Score=137.77 Aligned_cols=60 Identities=43% Similarity=0.586 Sum_probs=56.9
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHH
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLV 980 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~ 980 (988)
||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+ ++.+
T Consensus 1 lv~~~~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~ 61 (282)
T TIGR01859 1 LVNGKEILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMA 61 (282)
T ss_pred CCCHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHH
Confidence 68999999999999999999999999999999999999999999999999999977 6644
No 110
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.27 E-value=8.2e-11 Score=124.90 Aligned_cols=162 Identities=18% Similarity=0.155 Sum_probs=109.2
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------CCc---ccCCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------GGL---IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------G~~---~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|||+||| +|+||++++..|+++||+|++|+|++++.+.+.+. |.. ...+..++++++|+||+|+|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 5899997 89999999999999999999999999998776652 221 23466788999999999999765
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHH---------------HHHHHHHHHHhcCCCceEecC------cccCCcc
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPG---------------FVSQLERRLQFEGKDLKLVDA------PVSGGVK 273 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~---------------~~~~l~~~l~~~~~g~~~lda------pv~g~~~ 273 (988)
+++++ +++.+.+. +++||+++...+. .++.+++.++. +.+++-+ .+..++
T Consensus 81 -~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~---~~~VVka~~~~~a~~~~~~- 151 (219)
T TIGR01915 81 -VLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE---TSRVVAAFHNLSAVLLQDV- 151 (219)
T ss_pred -HHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC---CCeEeeccccCCHHHhcCC-
Confidence 66666 35555554 5899998765432 12444554432 1333333 233332
Q ss_pred cccCCCeEEEEeCCHHHHHHHHHHHHhc-CCeEEEEeCCcchHHHH
Q 001973 274 RASMGELTIMAAGTEESLKSTGSVLSAL-SEKLYVIKGGCGAGSGV 318 (988)
Q Consensus 274 ~a~~g~l~~~~gg~~~~~~~~~~ll~~~-g~~v~~~~g~~g~a~~~ 318 (988)
....+.-.+++|-++++.+.+..+.+.+ |...+. .|++..+-.+
T Consensus 152 ~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd-~G~l~~a~~~ 196 (219)
T TIGR01915 152 DDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALD-AGPLENAAIV 196 (219)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCccc-CCchhhHHHH
Confidence 1112233445555577788899999999 988876 3665544443
No 111
>PRK08185 hypothetical protein; Provisional
Probab=99.27 E-value=5e-12 Score=136.66 Aligned_cols=62 Identities=32% Similarity=0.359 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHhhhh
Q 001973 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTSSIM 985 (988)
Q Consensus 924 ~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~~~~ 985 (988)
|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.++..+++.
T Consensus 1 ~~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~ 62 (283)
T PRK08185 1 MKELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRE 62 (283)
T ss_pred CHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999776666543
No 112
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.27 E-value=6.1e-12 Score=126.17 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=97.6
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--------------CcccCCHHHHhccCcEEEEEcCCh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--------------GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
||+|||.|+||+++|..|+++||+|++|.|+++.++.+++.+ +.++++++++++++|+|++++|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 799999999999999999999999999999999999998743 235789999999999999999986
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcC--CCceEecCcccCCcccccCCCeEEEEeCCHH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASMGELTIMAAGTEE 289 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~ 289 (988)
. .++++ +.+.+++++++++|.++.+- +++...+.+.+.+.. ..+.++.+|.+.........+..++++.+.+
T Consensus 81 ~-~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 81 A-HREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp G-HHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred H-HHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 5 78888 68899999999999988654 433333334333311 1255666665555544555555566666554
No 113
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.25 E-value=2.9e-10 Score=125.71 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=129.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|+||.++|.+|...|++|++++++.++. +...+.|.... ++.+++++||+|++++|+... ..++. +
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~--~ 92 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYE--E 92 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHH--H
Confidence 3689999999999999999999999999998875544 34445577654 899999999999999998765 67763 4
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCccc-------ccCCCeEEE-EeCC--HHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVKR-------ASMGELTIM-AAGT--EESLKS 293 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~~-------a~~g~l~~~-~gg~--~~~~~~ 293 (988)
++.+++++|++|+.++.......+ .... .+..++- +|- +|.. ...|...++ +..+ .+..+.
T Consensus 93 ~I~~~Lk~g~iL~~a~G~~i~~~~----~~p~--~~~~Vi~vaPn--~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~ 164 (330)
T PRK05479 93 EIEPNLKEGAALAFAHGFNIHFGQ----IVPP--ADVDVIMVAPK--GPGHLVRREYEEGGGVPCLIAVHQDASGNAKDL 164 (330)
T ss_pred HHHhcCCCCCEEEECCCCChhhce----eccC--CCCcEEEeCCC--CCchhhhhhhhcCCCceEEEEecCCCCHHHHHH
Confidence 678889999999877775544432 1111 2333332 242 2222 344554455 4555 788899
Q ss_pred HHHHHHhcCCeEE-EEeCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 001973 294 TGSVLSALSEKLY-VIKGGCGA---GSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLF 351 (988)
Q Consensus 294 ~~~ll~~~g~~v~-~~~g~~g~---a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~ 351 (988)
+..+++.+|.... ++...+.. .....- ..++++....++..++......|.+|+..+
T Consensus 165 a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 165 ALAYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999997632 11111111 111111 345556666778888888999999987543
No 114
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.23 E-value=2.5e-10 Score=125.58 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=124.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCC----CeEEEEeCCh-hHHHHHHhc--CCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYR-PTLTKFQNV--GGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~--G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
+||+|||+|+||.+++..|.++| ++|++|+|++ ++.+.+... +...+.+..++++++|+||+|+|. ..++++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 58999999999999999999998 7899999865 445555443 344567888889999999999995 558888
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHH
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSV 297 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~l 297 (988)
+ +++.+.+.++++||..+.+..-. .+.+.++. ..++-+ +...+.....|...+..+. +++..+.++.+
T Consensus 81 l---~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~----~~vvR~-MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l 150 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG----LQVSRL-IPSLTSAVGVGTSLVAHAETVNEANKSRLEET 150 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC----CCEEEE-eCccHHHHhhhcEEEecCCCCCHHHHHHHHHH
Confidence 7 57777787888888776543322 44444431 122211 1122334445553333332 45677889999
Q ss_pred HHhcCCeEEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcC
Q 001973 298 LSALSEKLYVIKG-GCGAGSGVKMANQLLAGVHIASAAEAMAFGARL-GLNTRVLFNIITDSG 358 (988)
Q Consensus 298 l~~~g~~v~~~~g-~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~-Gid~~~~~~~l~~~~ 358 (988)
|+.+|..+.. .. ......++--+.-.+.+.++.++.++ +.+. |++.++..+++.+..
T Consensus 151 ~~~~G~~~~v-~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 151 LSHFSHVMTI-REENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred HHhCCCEEEE-chhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHH
Confidence 9999975433 11 11111111011122333333333333 6777 799999988887654
No 115
>PLN02712 arogenate dehydrogenase
Probab=99.22 E-value=4.6e-10 Score=136.61 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=114.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
+|+|||||+|.||..+|..|.+.|++|++|||+... +...+.|+...+++.+++ .++|+||+|+|. ..+..++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~ 126 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---K 126 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---H
Confidence 479999999999999999999999999999998554 455667887788888865 569999999996 4577777 4
Q ss_pred chh-hhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCccc--ccCCCeEEEEe---CC-H---HHHHH
Q 001973 225 GAV-SALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKR--ASMGELTIMAA---GT-E---ESLKS 293 (988)
Q Consensus 225 ~i~-~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~--a~~g~l~~~~g---g~-~---~~~~~ 293 (988)
++. +.++++++|+|++++.....+.+.+.++. +..|+.. |++|.... ...+...++.+ ++ . +.++.
T Consensus 127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 554 56788999999999987666666665543 4567665 77766532 12233233332 32 2 34566
Q ss_pred HHHHHHhcCCeEEEE
Q 001973 294 TGSVLSALSEKLYVI 308 (988)
Q Consensus 294 ~~~ll~~~g~~v~~~ 308 (988)
+..+++.+|.+++.+
T Consensus 204 l~~l~~~lGa~v~~m 218 (667)
T PLN02712 204 FLEVFEREGCKMVEM 218 (667)
T ss_pred HHHHHHHcCCEEEEe
Confidence 779999999999886
No 116
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.21 E-value=1.6e-11 Score=136.70 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=102.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhh-ccCCchhhhccccccccCCCCcchHHHHHHhH---HHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFG--IHPWVLYDIISN-AAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNL---GIALD 74 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~G--ld~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl---~la~~ 74 (988)
|+||+++++++++++||+.|++++| +|++.++++++. +.++|++++.+.+.+.+++| +|.++++.||+ +++++
T Consensus 173 l~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~-~~~l~~~~KD~~~~~l~~~ 251 (299)
T PRK12490 173 MVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK-LAGIKGYVNDSGEGRWTVE 251 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC-hhhhhHHHHhcCcHHHHHH
Confidence 5899999999999999999999999 999999999996 45999999999998876543 57899999998 89999
Q ss_pred HHHhcCCCCcHHHHHH-HHHHHHhhCcCCCCCchhHHHHHH
Q 001973 75 MAKTLAFPLPLLAVAH-QQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 75 ~a~~~g~~~p~~~~~~-~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
+|++.|+|+|+.+.+. .+|....++|.|+.|++++.+++-
T Consensus 252 ~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 252 EAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 9999999999999995 999999999999999999887753
No 117
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.20 E-value=2.1e-10 Score=116.72 Aligned_cols=167 Identities=19% Similarity=0.218 Sum_probs=109.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhc-CC-cccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNV-GG-LIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~-G~-~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
||+|+|+|.|+||.++|++|+++||+|++-+|+.++. +...+. +. ....++.++++.+|+||++||-+. +..++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v~-- 77 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDVL-- 77 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhHH--
Confidence 4799999999999999999999999999997665543 333322 32 235678899999999999999866 55555
Q ss_pred ccchhhhCCCCCEEEecCCC---------------CHHHHHHHHHHHHhcC--CCceEecCcccCCcccccCCCeEEEEe
Q 001973 223 DLGAVSALSSGASIILSSTV---------------SPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASMGELTIMAA 285 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---------------~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~g~l~~~~g 285 (988)
.++...+. |++|||++.- .-..++.+++.++... +.++-+.+.....-.... +...+++.
T Consensus 78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~-~~~~v~va 154 (211)
T COG2085 78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPG-GRRDVLVA 154 (211)
T ss_pred -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcC-CceeEEEe
Confidence 45555554 8999999874 1123444455444310 112223222222222222 44455555
Q ss_pred -CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH
Q 001973 286 -GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319 (988)
Q Consensus 286 -g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K 319 (988)
-|.++.+.+..+.+.+|...+. +|++..+..+-
T Consensus 155 gDD~~Ak~~v~~L~~~iG~~~ld-~G~L~~a~~le 188 (211)
T COG2085 155 GDDAEAKAVVAELAEDIGFRPLD-AGPLENARILE 188 (211)
T ss_pred cCcHHHHHHHHHHHHhcCcceee-ccccccccccc
Confidence 4567888999999999988876 57766555443
No 118
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=99.19 E-value=2.2e-11 Score=131.17 Aligned_cols=59 Identities=49% Similarity=0.726 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 924 ~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|++.+..
T Consensus 1 ~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~ 59 (276)
T cd00947 1 TKELLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVA 59 (276)
T ss_pred CHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999875543
No 119
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.19 E-value=5.5e-10 Score=137.46 Aligned_cols=186 Identities=13% Similarity=0.074 Sum_probs=130.3
Q ss_pred CeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhHHHHHH-----------hc-------------CCcccCCHHHHhc
Q 001973 147 TRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPTLTKFQ-----------NV-------------GGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~-------------G~~~~~s~~e~~~ 201 (988)
+||+|||+|.||..||..++ .+|++|++||++++..+... +. .++.++++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999998 58999999999987655422 11 23345666 4678
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccCCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~g~ 279 (988)
+||+||-++|...+++.-++ .++-+.+++++++...|+..|-+. +++.+.. +..|.||...|..- .
T Consensus 384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~~g~HffnP~~~~--------~ 451 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPIGQ--IAAAASRPENVIGLHYFSPVEKM--------P 451 (699)
T ss_pred cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHHH--HHHhcCCcccEEEEecCCccccC--------c
Confidence 99999999999988776665 567777888888776555544432 3443332 22355665443221 1
Q ss_pred eEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 280 LTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 280 l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
++-++. .+++.++.+..+++.+|+.++++.+.+| ++.|-+ ....++|++.+.+ .|++++++..++.
T Consensus 452 lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl---~~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 452 LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRI---LAPYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHH---HHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 233332 4789999999999999999887533333 333433 3356899988887 5789999988874
No 120
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.19 E-value=7.3e-10 Score=138.85 Aligned_cols=182 Identities=20% Similarity=0.175 Sum_probs=132.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhcCCc--ccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNVGGL--IANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G~~--~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
.||+|||+|.||.++++.|.++| ++|++||+++++.+.+.+.|.. ..++..++++++|+||+|+|.. .+++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH--
Confidence 58999999999999999999999 4899999999998888887764 4567888899999999999975 577777
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCccc--------ccCCCeEEEEe---CCHHH
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKR--------ASMGELTIMAA---GTEES 290 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~--------a~~g~l~~~~g---g~~~~ 290 (988)
+.+.+.++++.+|+|+++++......+.+.+.. ...+|+ ..|++|+... .-.+..++++. ++++.
T Consensus 81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~--~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE--LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccc--cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 577778888999999999998888877776643 245554 5587766531 11233333342 56778
Q ss_pred HHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 001973 291 LKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEA 336 (988)
Q Consensus 291 ~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea 336 (988)
++.++++|+.+|.+++++ ++-..-..+- +.+..-++....+.|+
T Consensus 158 ~~~~~~l~~~~G~~~~~~-~~~~hD~~~a-~~~~~ph~~~~~l~~~ 201 (735)
T PRK14806 158 LARVDRLWRAVGADVLHM-DVAHHDEVLA-ATSHLPHLLAFSLVDQ 201 (735)
T ss_pred HHHHHHHHHHcCCEEEEc-CHHHHhHHHH-HhcchHHHHHHHHHHH
Confidence 899999999999988775 3322222222 3333333344445555
No 121
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.18 E-value=5.7e-10 Score=137.69 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=131.5
Q ss_pred CeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhHHHHHH-----------hcC-------------CcccCCHHHHhc
Q 001973 147 TRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPTLTKFQ-----------NVG-------------GLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~ 201 (988)
.||+|||+|.||..||..++ .+|++|++||++++..+... +.| ++.++++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 58999999999999999999 88999999999988655432 112 3345666 5678
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~ 279 (988)
+||+||-++|....++.-++ .++-+.+++++++...|+..|-+. +++.+. ++..|.||...|..- .
T Consensus 389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~ig~Hff~P~~~~--------~ 456 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPIGQ--IAAAAARPEQVIGLHYFSPVEKM--------P 456 (708)
T ss_pred cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH--HHHhcCcccceEEEecCCccccC--------c
Confidence 99999999999888776665 577778889888887666555443 333332 222355555433211 1
Q ss_pred eEEEE---eCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 280 LTIMA---AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 280 l~~~~---gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
++-++ ..+++.++.+..++..+|+.++++.+.+| ++.|-+ ....++|++.+.+. |++++++..++.
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl---~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRI---LAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHH---HHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 23333 24789999999999999998877533344 233433 34568999988876 889999988875
No 122
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.18 E-value=3.7e-10 Score=139.35 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=133.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hcC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ-----------NVG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~~ 202 (988)
.||+|||+|.||..||..++.+||+|++||++++..+... +.| ++.++++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999999998765421 122 3345666 45789
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccCCCe
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
||+||-++|..-+++.-++ .++.+.++++.++...|+..|-+. +++.+.. +..|.||...|..- .+
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~~--la~~~~~p~r~~g~Hff~P~~~~--------~l 460 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISISL--LAKALKRPENFCGMHFFNPVHRM--------PL 460 (715)
T ss_pred CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH--HHhhcCCCccEEEEecCCccccc--------ce
Confidence 9999999999888776665 577778888888876665555443 4443332 22345555433111 12
Q ss_pred EEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 281 TIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 281 ~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+-++. .+++.++.+..++..+|+.++.+.+.+| ++.|-+. ..+++|++.+.+. |.+++++..++..+
T Consensus 461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~---~~~~~ea~~lv~~-Ga~~e~ID~a~~~~ 530 (715)
T PRK11730 461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVL---FPYFAGFSQLLRD-GADFRQIDKVMEKQ 530 (715)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHHhh
Confidence 32332 4789999999999999999887533444 3445432 3357899988875 59999999987754
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 531 ~G 532 (715)
T PRK11730 531 FG 532 (715)
T ss_pred CC
Confidence 44
No 123
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=99.17 E-value=2.9e-11 Score=132.52 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
.+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++++|++
T Consensus 14 ~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~ 67 (357)
T TIGR01520 14 DVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIA 67 (357)
T ss_pred HHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcC
Confidence 479999999999999999999999999999999999999999999999999854
No 124
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.17 E-value=7.9e-11 Score=107.85 Aligned_cols=89 Identities=26% Similarity=0.340 Sum_probs=74.6
Q ss_pred eEEEEccchHHHHHHHHHHhCC---CeEEEE-eCChhHHHHHHhc-CCcccC-CHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 148 RVGFIGLGAMGFGMATHLLRSN---FTVIGY-DVYRPTLTKFQNV-GGLIAN-SPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~-G~~~~~-s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
||||||+|+||++|++.|.++| ++|+++ +|++++.+++.+. +..... +..++++++|+||+|||... +.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~-~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ-LPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG-HHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH-HHHHH-
Confidence 7999999999999999999999 999955 9999999998665 555555 89999999999999999755 77777
Q ss_pred cccchhhhCCCCCEEEecCC
Q 001973 222 GDLGAVSALSSGASIILSST 241 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st 241 (988)
..+ ....+++++|+.+.
T Consensus 79 --~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp --HHH-HHHHTTSEEEEEST
T ss_pred --HHH-hhccCCCEEEEeCC
Confidence 466 67778999998764
No 125
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.16 E-value=5.5e-10 Score=137.44 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=134.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~~~ 202 (988)
.+|+|||+|.||..||..++.+|++|++||++++.+++..+ .| ++.++++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 58999999999999999999999999999999987664321 12 3345666 45789
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCe
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
||+||-+++..-+++.-++ .++-+.+++++++...|+..|-+. ++..+. ++..|.||...|..- .+
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i~~--ia~~~~~p~r~ig~Hff~P~~~~--------~l 460 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISISL--LAKALKRPENFCGMHFFNPVHRM--------PL 460 (714)
T ss_pred CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCcccEEEEecCCCcccC--------ce
Confidence 9999999999988876665 677788888888877665555443 344333 222356665433111 22
Q ss_pred EEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 281 TIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 281 ~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+-++. .+++.++.+..++..+|+..+.+.+.+| ++.|-+. ..++.|++.+.+ .|.+++++..++..+
T Consensus 461 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~---~~~~~ea~~l~~-eG~~~~~ID~a~~~~ 530 (714)
T TIGR02437 461 VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVL---FPYFGGFSKLLR-DGADFVRIDKVMEKQ 530 (714)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHH---HHHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence 33332 4689999999999999999887533333 3445442 345789999886 469999999988655
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 531 ~G 532 (714)
T TIGR02437 531 FG 532 (714)
T ss_pred CC
Confidence 44
No 126
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.16 E-value=1.3e-10 Score=119.04 Aligned_cols=148 Identities=17% Similarity=0.234 Sum_probs=98.4
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------c-------------CCcccCCHHHHhccC
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------V-------------GGLIANSPAEAAKDV 203 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------G~~~~~s~~e~~~~a 203 (988)
||+|||+|.||..+|..++.+|++|++||++++..+...+ . .+..+++++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999987654322 1 234678888888 99
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCeE
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
|+||-|+|....++.-++ ..+.+.++++.++...|+..+-+ +++..+. ++..|.||...|..- .++
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~~~--------~lV 147 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPHLM--------PLV 147 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTTT----------EE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccccC--------ceE
Confidence 999999999887766655 57777788888888766655443 2333332 222356666433211 123
Q ss_pred EEE-e--CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 282 IMA-A--GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 282 ~~~-g--g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
=++ + .+++.++.+..+++.+|+.++.+
T Consensus 148 Evv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 148 EVVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp EEEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 222 2 47899999999999999988764
No 127
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=99.14 E-value=4.6e-11 Score=130.92 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
.+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|++
T Consensus 8 ~~k~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~ 61 (350)
T PRK09197 8 DYQEMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIA 61 (350)
T ss_pred HHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcC
Confidence 479999999999999999999999999999999999999999999999999865
No 128
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.12 E-value=1.2e-09 Score=134.75 Aligned_cols=186 Identities=14% Similarity=0.110 Sum_probs=131.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~~~ 202 (988)
.+|+|||+|.||..||..++.+|++|++||++++.+++..+ .| ++.++++. .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 58999999999999999999999999999999988665321 12 33456664 5789
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCe
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
||+||-+++...+++.-++ .++-+.++++.++...|+.-|-+ ++++.+. ++..|.||...|..- .+
T Consensus 415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m--------~L 482 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKM--------QL 482 (737)
T ss_pred CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccC--------ce
Confidence 9999999999988877665 57777888888877655444433 2344332 222355666433111 22
Q ss_pred EEEE---eCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 281 TIMA---AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 281 ~~~~---gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
+-++ ..+++.++.+..++..+|+.++++.+.+| ++.|-+. ..+++|++.+.+. |++++++..++.
T Consensus 483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~---~~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCL---GPMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3333 24788999999999999999887533344 3344332 3568999988755 789999998753
No 129
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.11 E-value=3.8e-09 Score=119.22 Aligned_cols=155 Identities=18% Similarity=0.193 Sum_probs=113.0
Q ss_pred CCeEEEEcc-chHHHHHHHHHHh-CCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLR-SNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.++|+|||+ |.||..+|+.|.+ .|++|++||++.+ ...++.+.+.+||+||+|+|-.. +..++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~-~~~~l--- 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH-TAALI--- 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH-HHHHH---
Confidence 479999999 9999999999996 4899999998521 24567888999999999999866 55555
Q ss_pred cchhhh---CCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcc-cccCCCeEEEEeCC-HHHHHHHHHH
Q 001973 224 LGAVSA---LSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVK-RASMGELTIMAAGT-EESLKSTGSV 297 (988)
Q Consensus 224 ~~i~~~---l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~-~a~~g~l~~~~gg~-~~~~~~~~~l 297 (988)
+++.+. ++++++|+|.++++......+. . .+..|+.+ |++|+.. ..-.+..++++.+. .+..+.++.+
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~--~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l 142 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAML----A--SQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSL 142 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcHHHHHHHH----h--cCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHH
Confidence 455554 7899999999999866655442 2 23567776 7877753 33356656666543 3446788999
Q ss_pred HHhcCCeEEEEeCCcchHHHHHHHH
Q 001973 298 LSALSEKLYVIKGGCGAGSGVKMAN 322 (988)
Q Consensus 298 l~~~g~~v~~~~g~~g~a~~~Kl~~ 322 (988)
++.+|.+++.+ ..-.+-..+-+++
T Consensus 143 ~~~~Ga~v~~~-~aeeHD~~~A~vS 166 (370)
T PRK08818 143 CSALQAECVYA-TPEHHDRVMALVQ 166 (370)
T ss_pred HHHcCCEEEEc-CHHHHHHHHHHHH
Confidence 99999998885 4444445555554
No 130
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.10 E-value=1.2e-10 Score=126.37 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEecc-chhcccC
Q 001973 925 KELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRS-TCFKVQY 976 (988)
Q Consensus 925 ~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~-~~~~~~~ 976 (988)
++||++|++++||||||||+|+|+++|+++|||+.++|||||+++ +..+|.|
T Consensus 2 ~~ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g 54 (340)
T cd00453 2 QKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAG 54 (340)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCC
Confidence 789999999999999999999999999999999999999999999 6778888
No 131
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.09 E-value=2.3e-09 Score=124.76 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=139.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-c--hHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-H--FLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f--~l~l~~KDl~la~~~a~ 77 (988)
+++|++.+++++.+.|++.++++.|+|++.++++++.+ ++|..++|.| | ....+.||++++++.|+
T Consensus 209 l~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~ 277 (411)
T TIGR03026 209 LAENTFRAVKIAFANELARICEALGIDVYEVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAK 277 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHH
Confidence 57999999999999999999999999999999999764 4566778888 5 46779999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEcc---
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGL--- 154 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~--- 154 (988)
+.|+++|+.+.+.+.-+..... +++.+.+..+ . ....+|+|+|+
T Consensus 278 ~~g~~~~l~~~~~~~N~~~~~~---------~~~~~~~~l~-------------------~-----~~~~~v~vlGlafK 324 (411)
T TIGR03026 278 ELGYNPELIEAAREINDSQPDY---------VVEKILDLLG-------------------P-----LKGKTVLILGLAFK 324 (411)
T ss_pred hcCCCcHHHHHHHHHHHHhHHH---------HHHHHHHHhh-------------------c-----ccCCEEEEEeeEec
Confidence 9999999999998887754432 3443333221 0 01248999998
Q ss_pred -------chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchh
Q 001973 155 -------GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAV 227 (988)
Q Consensus 155 -------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~ 227 (988)
..-...++..|.+.|.+|.+||........ . ....++++.++++++|.|++++..+. .++.-+ +.+.
T Consensus 325 ~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~-~--~~~~~~~~~~~~~~ad~~v~~t~~~~-~~~~~~--~~~~ 398 (411)
T TIGR03026 325 PNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEV-K--GLPLIDDLEEALKGADALVILTDHDE-FKDLDL--EKIK 398 (411)
T ss_pred CCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhh-h--hcccCCCHHHHHhCCCEEEEecCCHH-HhccCH--HHHH
Confidence 346778999999999999999976433211 1 12236788899999999999999866 332210 2233
Q ss_pred hhCCCCCEEEec
Q 001973 228 SALSSGASIILS 239 (988)
Q Consensus 228 ~~l~~g~ivId~ 239 (988)
+.+ +..+|+|.
T Consensus 399 ~~~-~~~~v~D~ 409 (411)
T TIGR03026 399 DLM-KGKVVVDT 409 (411)
T ss_pred Hhc-CCCEEEeC
Confidence 323 34578875
No 132
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=99.09 E-value=1.2e-10 Score=128.27 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
.|++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|++
T Consensus 3 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~ 56 (345)
T cd00946 3 DVLKLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYA 56 (345)
T ss_pred HHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC
Confidence 379999999999999999999999999999999999999999999999988744
No 133
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.05 E-value=2.5e-10 Score=108.92 Aligned_cols=100 Identities=21% Similarity=0.283 Sum_probs=69.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEE-EeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIG-YDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.+||+|||.|++|..+++.|.++||+|.. |+|+++..+++... +.....++.|.++++|++|++|||+. +..+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~va--- 85 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEVA--- 85 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHHH---
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHHH---
Confidence 46999999999999999999999999866 48988887777654 44455678889999999999999975 77776
Q ss_pred cchhhh--CCCCCEEEecCCCCHHHHHH
Q 001973 224 LGAVSA--LSSGASIILSSTVSPGFVSQ 249 (988)
Q Consensus 224 ~~i~~~--l~~g~ivId~st~~p~~~~~ 249 (988)
+++... ..+|++|++||...+....+
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~vL~ 113 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSDVLA 113 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GGGGH
T ss_pred HHHHHhccCCCCcEEEECCCCChHHhhh
Confidence 566665 77999999999887655443
No 134
>PRK07574 formate dehydrogenase; Provisional
Probab=98.98 E-value=2.8e-09 Score=121.02 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=96.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|.+|.+|||+....+.....|+....+++++++.||+|++++|...+++.++. ++
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~ 269 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--AD 269 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HH
Confidence 3689999999999999999999999999999987444434445766677999999999999999999999999984 57
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++||++.+..-....+.+.+.+.
T Consensus 270 ~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 270 VLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred HHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 78889999999999999999999999999873
No 135
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.97 E-value=1.9e-08 Score=111.85 Aligned_cols=240 Identities=15% Similarity=0.100 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc--------------cCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 156 AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI--------------ANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 156 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~--------------~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
.||+.+|..|+++||+|++|+|+ ++.+.+++.|..+ .+++++ ....|+||+|++..+ +++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~-~~~~l- 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ-TEEAA- 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh-HHHHH-
Confidence 47999999999999999999997 6778887766421 223444 568999999999875 67776
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCcc---cccCCCeEEEEeCC---HHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVK---RASMGELTIMAAGT---EESLKS 293 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~---~a~~g~l~~~~gg~---~~~~~~ 293 (988)
+.+.+.+.++++|+.+.++- +..+.+.+.++... .++.+..+-.. +|. ....+. +.+|.. .+..+.
T Consensus 77 --~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~~~~v~~g~~~~~~~~~-~pg~v~~~~~~~--~~iG~~~~~~~~~~~ 150 (293)
T TIGR00745 77 --ALLLPLIGKNTKVLFLQNGL-GHEERLRELLPARRILGGVVTHGAVRE-EPGVVHHAGLGA--TKIGDYVGENEAVEA 150 (293)
T ss_pred --HHhHhhcCCCCEEEEccCCC-CCHHHHHHHhCccCEEEEEEEEeeEEc-CCcEEEEecccc--EEEecCCCchHHHHH
Confidence 57778888888888766542 33345555553210 01111111111 111 111222 334432 245667
Q ss_pred HHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC--HHHH
Q 001973 294 TGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLGLN--TRVL 350 (988)
Q Consensus 294 ~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~Gid--~~~~ 350 (988)
+..+|+..+.++.. ..++-...|.|++.|...+ .+...+.|+..++++.|++ .+.+
T Consensus 151 l~~~l~~~~~~~~~-~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~ 229 (293)
T TIGR00745 151 LAELLNEAGIPAEL-HGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEV 229 (293)
T ss_pred HHHHHHhCCCCCEe-cchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 77888877777655 5788899999998775322 4455688999999999975 3333
Q ss_pred HHHHHhc---C--CCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001973 351 FNIITDS---G--GSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 351 ~~~l~~~---~--~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
.+.+... . ..|.++... ..+ -. .++--=.+++++.++++|+++|..+.++++++..
T Consensus 230 ~~~~~~~~~~~~~~~sSm~~D~----~~g-----r~-tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 230 EELVRAVIRMTAENTSSMLQDL----LRG-----RR-TEIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred HHHHHHHHhcCCCCCChHHHHH----HcC-----Cc-chHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 3333321 1 111111111 001 00 0111113588999999999999999999887654
No 136
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.97 E-value=2e-08 Score=111.56 Aligned_cols=193 Identities=20% Similarity=0.192 Sum_probs=120.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCC-hhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVY-RPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|||+|+||.++|.+|.+.|++|+++++. +++.+.+.+.|+... +..+++++||+|++++|+..+...++ +
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~ 78 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---A 78 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---H
Confidence 368999999999999999999999998876554 456677777788654 58889999999999999875566655 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCcccc-------cCCCeEEE-EeC--CHHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKRA-------SMGELTIM-AAG--TEESLKS 293 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~a-------~~g~l~~~-~gg--~~~~~~~ 293 (988)
++.+.++++.+|.-......... ...++ .+..++ -+| .+|... ..|...++ +.. +.+..+.
T Consensus 79 ei~~~l~~g~iVs~aaG~~i~~~---~~~~~---~~~~VvrvmP--n~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~ 150 (314)
T TIGR00465 79 EIQPLLKEGKTLGFSHGFNIHFV---QIVPP---KDVDVVMVAP--KGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAI 150 (314)
T ss_pred HHHhhCCCCcEEEEeCCccHhhc---cccCC---CCCcEEEECC--CCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHH
Confidence 67788888876655555543332 22222 123333 223 223332 44543443 332 4667889
Q ss_pred HHHHHHhcCCe-------EE--EE-eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 294 TGSVLSALSEK-------LY--VI-KGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 294 ~~~ll~~~g~~-------v~--~~-~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+..+++.+|.. .+ .+ .+-.+... .+.....+++...+.-..+.|++++..+..+.+.
T Consensus 151 ~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t-------~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 151 ALAYAKAIGGGRAGVLETTFKEETESDLFGEQA-------VLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHHHHcCCCccceeechhHhhhhHHhcCcch-------hHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999976 21 10 01111111 1222222222222233379999999988876543
No 137
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.95 E-value=1e-08 Score=103.29 Aligned_cols=253 Identities=17% Similarity=0.127 Sum_probs=158.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----------C------------------CcccCCH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----------G------------------GLIANSP 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------G------------------~~~~~s~ 196 (988)
.+.|+|||.|.||+.||+.-+..|++|+++|++.+...+..+. + +..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 4689999999999999999999999999999998876654331 1 2346788
Q ss_pred HHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecC-cccCCcc
Q 001973 197 AEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDA-PVSGGVK 273 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~lda-pv~g~~~ 273 (988)
.+++.++|+|+-++-...+++.-+| +.+-...++.+++. ..|++-..+ .++..+. .++.|.||... ||+.-.+
T Consensus 91 ~~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~-tNTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLvE 166 (298)
T KOG2304|consen 91 SDAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILA-TNTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLVE 166 (298)
T ss_pred HHhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEe-ecccceeHH-HHHhhccChhhhceeeccCCchhHHHhh
Confidence 8888889998887766655555555 44444455555554 333333222 2222222 23457888765 5554433
Q ss_pred cccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 274 RASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 274 ~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
-..... .+++.+..+..+-+.+|+..+..-+.+| ++.|-+ .+-++.|++++.++-..+.+.+...
T Consensus 167 Vir~~~------TS~eTf~~l~~f~k~~gKttVackDtpG------FIVNRl---LiPyl~ea~r~yerGdAskeDIDta 231 (298)
T KOG2304|consen 167 VIRTDD------TSDETFNALVDFGKAVGKTTVACKDTPG------FIVNRL---LIPYLMEAIRMYERGDASKEDIDTA 231 (298)
T ss_pred hhcCCC------CCHHHHHHHHHHHHHhCCCceeecCCCc------hhhhHH---HHHHHHHHHHHHHhcCCcHhhHHHH
Confidence 222222 4678888899999999998776334555 334433 4567999999999999999999888
Q ss_pred HHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHH--HHhCCCCchHHHHHHHHHHHHHHcCCCCCCh
Q 001973 354 ITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARE--CLSQRVPLHISTIAHQLFLAGSAAGWGRQDD 426 (988)
Q Consensus 354 l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~--a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~ 426 (988)
...|++... +| +.--||.+ ++...--+.-..+. ....-.|.|++.....--+...+.|.|.++|
T Consensus 232 MklGagyPM-----GP-fEL~DyvG---LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Y 297 (298)
T KOG2304|consen 232 MKLGAGYPM-----GP-FELADYVG---LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKY 297 (298)
T ss_pred HhccCCCCC-----Ch-HHHHHHhh---HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceec
Confidence 777664322 11 11122221 11111111211111 1223457888887777777777777776654
No 138
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.94 E-value=4.9e-09 Score=117.64 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=90.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||+.+|+.|...|++|++||++++..... ...++++.+++++||+|++++|...+++.++. ++
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~ 219 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KA 219 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HH
Confidence 3589999999999999999999999999999998654322 23466899999999999999999988888774 57
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+.+++|.++|+++-+..-....+.+.+.+
T Consensus 220 ~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 220 MFDHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HHhcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 7888999999999998888888888888876
No 139
>PLN03139 formate dehydrogenase; Provisional
Probab=98.94 E-value=5.9e-09 Score=118.33 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=97.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|.+|.+||++....+...+.|+...+++++++.+||+|++++|.+.+++.++. ++
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~ 276 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KE 276 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HH
Confidence 4699999999999999999999999999999986544444555777778999999999999999999999999884 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++|+++.+..-....+.+.+.+.
T Consensus 277 ~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 277 RIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred HHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 88899999999999999999999999999863
No 140
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.90 E-value=3.5e-09 Score=117.02 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=89.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-ccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|.||..+|+.|...|++|++|||+... .|.. ...++++++++||+|++++|...+++.++. .
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~ 193 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--S 193 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--H
Confidence 469999999999999999998889999999997532 2332 256899999999999999999999998874 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+..+++|.++|++|.+.+.....+.+.+.+
T Consensus 194 ~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 194 KMLSLFRKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 67888999999999999999999999999976
No 141
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.87 E-value=7.9e-09 Score=116.37 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=88.8
Q ss_pred CCeEEEEccchHHHHHHHHH-HhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHL-LRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L-~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|.||..+|++| ...|.+|++||+++.... ..++...+++.+++++||+|++++|.....+.++. .
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~--~ 220 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFN--A 220 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcC--H
Confidence 36999999999999999999 456889999999875431 22345567899999999999999999887776552 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+..+.+++|.++|++|++.......+.+.+.+
T Consensus 221 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 221 DLFKHFKKGAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred HHHhcCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 56788999999999999999999999998876
No 142
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.86 E-value=3e-07 Score=94.46 Aligned_cols=200 Identities=20% Similarity=0.268 Sum_probs=139.8
Q ss_pred CeEEEEccchH--------------------HHHHHHHHHhCCCeEEEEeCCh-----hHHHHHHhcCCcccCCHHHHhc
Q 001973 147 TRVGFIGLGAM--------------------GFGMATHLLRSNFTVIGYDVYR-----PTLTKFQNVGGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~m--------------------G~~lA~~L~~~G~~V~v~dr~~-----~~~~~l~~~G~~~~~s~~e~~~ 201 (988)
|||+|.|.|+- |..||-.++++||+|.+.|.|. +..++....|+.++++..++++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 57888888863 7889999999999999998764 4466777889999999999999
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHH-HHHHHHHHhcCCCceEecCcccCCcccccCCCe
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFV-SQLERRLQFEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~-~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
.+++.++.+|-....-.+. ++++++++.|.+|++++|++|-.- ..+...+.....++..-+.. -.+.++......
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmH-PAgvPGtp~h~~ 157 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMH-PAGVPGTPQHGH 157 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccC-CCCCCCCCCCce
Confidence 9999999999886666666 688999999999999999988643 33444443322222222211 112222222233
Q ss_pred EEEEe--------CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Q 001973 281 TIMAA--------GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLF 351 (988)
Q Consensus 281 ~~~~g--------g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~ 351 (988)
.++.| ..++..+++.++.+..|+.+|++ +...-+.+.=...++.+..+.++.+-..++.+ .|.+.+.+-
T Consensus 158 yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~--padv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIe 235 (340)
T COG4007 158 YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL--PADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIE 235 (340)
T ss_pred EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec--CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 44443 14678899999999999999986 44444444444556666677777777777663 566655444
Q ss_pred H
Q 001973 352 N 352 (988)
Q Consensus 352 ~ 352 (988)
+
T Consensus 236 k 236 (340)
T COG4007 236 K 236 (340)
T ss_pred H
Confidence 3
No 143
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.86 E-value=1e-08 Score=115.35 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=92.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+.|...|++|.+|||++.... ....|.. ..++.+++++||+|++++|.+.+++.++. ++
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~ 225 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EE 225 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HH
Confidence 46999999999999999999999999999999875432 2333544 35899999999999999999998998884 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
..+.+++|.++|+++++..-....+.+.+.+
T Consensus 226 ~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 226 RLKLMKPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred HHhcCCCCeEEEECcCchhcCHHHHHHHHHc
Confidence 7888999999999999999999999999976
No 144
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.86 E-value=5.4e-09 Score=122.17 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=88.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhccCCchhhhccccccccCC-CCc-chHHHHHHhHH----
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ-FGIHPWVLYDI---ISNAAGNSWIFKNYIPNLLRGD-AKL-HFLNAFIQNLG---- 70 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~-~Gld~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~-~~~-f~l~l~~KDl~---- 70 (988)
|+||++.++++++++||+.++++ +|+|++.+.++ ++.+.++||+++.+.+.+..++ |.| |.++++.||++
T Consensus 189 lv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGT 268 (493)
T PLN02350 189 MVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGT 268 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccch
Confidence 68999999999999999999999 59999999999 5689999999999999888775 988 99999999999
Q ss_pred --HHHHHHHhcCCCCcH-HHHHHHHHHHHh
Q 001973 71 --IALDMAKTLAFPLPL-LAVAHQQLILGL 97 (988)
Q Consensus 71 --la~~~a~~~g~~~p~-~~~~~~~~~~a~ 97 (988)
++.+.|.+.|+|+|+ .+++.+.|....
T Consensus 269 g~w~~~~A~~lgv~~p~i~~av~~r~~s~~ 298 (493)
T PLN02350 269 GKWTVQQAAELSVAAPTIAASLDARYLSGL 298 (493)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhcc
Confidence 999999999999998 888888777443
No 145
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.84 E-value=4.5e-09 Score=107.77 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=89.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.|...|.+|++|||+..........+.. ..+++|+++.||+|++++|...+.+.++. ++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~--~~ 112 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLIN--AE 112 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceeee--ee
Confidence 4699999999999999999999999999999998877655565663 45999999999999999998777777664 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-...-.-..+.+.+.+
T Consensus 113 ~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 113 FLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp HHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred eeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 7788999999999998888788888888876
No 146
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.84 E-value=1.3e-07 Score=103.05 Aligned_cols=155 Identities=24% Similarity=0.306 Sum_probs=106.2
Q ss_pred HHHHHHhCC--CeEEEEeCChhHHHHHHhcCCcccC-CHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE
Q 001973 161 MATHLLRSN--FTVIGYDVYRPTLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII 237 (988)
Q Consensus 161 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI 237 (988)
+|+.|.++| ++|++||++++..+...+.|+.... +..+.+.++|+||+|+|-.. +..++ +++.+.++++.+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~-~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA-IEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH-HHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH-HHHHH---HHhhhhcCCCcEEE
Confidence 588899999 7899999999999988888875322 22678899999999999766 66666 68888899999999
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCC----cccc----cCCCeEEEEeC---CHHHHHHHHHHHHhcCCeE
Q 001973 238 LSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGG----VKRA----SMGELTIMAAG---TEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 238 d~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~----~~~a----~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v 305 (988)
|.++++-.....+.+.++ .+..|+.+ |++|+ +..+ -.|...+++.+ +.+.++.++.+++.+|.++
T Consensus 77 Dv~SvK~~~~~~~~~~~~---~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~ 153 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP---EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARV 153 (258)
T ss_dssp E--S-CHHHHHHHHHHHT---SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EE
T ss_pred EeCCCCHHHHHHHHHhcC---cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEE
Confidence 999999988888877765 24566665 55555 3222 24666677643 4578899999999999998
Q ss_pred EEEeCCcchHHHHHHHHH
Q 001973 306 YVIKGGCGAGSGVKMANQ 323 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N 323 (988)
+.+ ..-..-..+-+++.
T Consensus 154 ~~~-~~eeHD~~~A~vsh 170 (258)
T PF02153_consen 154 VEM-DAEEHDRIMAYVSH 170 (258)
T ss_dssp EE---HHHHHHHHHHHTH
T ss_pred EEc-CHHHHHHHHHHHHH
Confidence 875 33333334434333
No 147
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.84 E-value=1.4e-08 Score=110.66 Aligned_cols=193 Identities=18% Similarity=0.149 Sum_probs=117.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||.++|++|...|++|++||+.....+.....|... .++.++++.||+|++++|++.+ +.++. ++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~e 91 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AE 91 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HH
Confidence 35899999999999999999999999999998755555555667765 4899999999999999999665 77774 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceE-ecCcccCCcc-c----ccCCCeEEEE---eCCHHHHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL-VDAPVSGGVK-R----ASMGELTIMA---AGTEESLKSTGS 296 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~-ldapv~g~~~-~----a~~g~l~~~~---gg~~~~~~~~~~ 296 (988)
+.+.+++|.+++-.-.-..... ...+. .++.. +-+|=..|+. + ...|.-.+++ -.+..+.+....
T Consensus 92 il~~MK~GaiL~f~hgfni~~~----~i~pp--~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala 165 (335)
T PRK13403 92 VEENLREGQMLLFSHGFNIHFG----QINPP--SYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA 165 (335)
T ss_pred HHhcCCCCCEEEECCCcceecC----ceeCC--CCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence 8899999998875443221111 11111 22322 2233211111 0 1112211111 122345666777
Q ss_pred HHHhcCCe---EEEEeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 001973 297 VLSALSEK---LYVIKGGCGAGSGVKMA--NQLLAGVHIASAAEAMAFGARLGLNTRVL 350 (988)
Q Consensus 297 ll~~~g~~---v~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~la~~~Gid~~~~ 350 (988)
....+|.. ++. .....-.-.-|. +..++.....++.-.+.-....|.+|+..
T Consensus 166 ~a~~iG~~ragv~~--ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~A 222 (335)
T PRK13403 166 YAKGVGCTRAGVIE--TTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIA 222 (335)
T ss_pred HHHHcCCCceeEEe--cchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 77777754 222 122221222222 22445555566666667778888887654
No 148
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.82 E-value=1e-08 Score=102.57 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=86.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CC----cccCCHHHHhccCcEEEEEcCChHH-HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GG----LIANSPAEAAKDVGVLVIMVTNEAQ-AESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~----~~~~s~~e~~~~aDvV~l~vp~~~~-~~~v 219 (988)
++|+|||+|.||..++..|.+.| ++|++|||++++.+++.+. +. ....+..++++++|+|++|+|.+.. ++.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 58999999999999999999996 8999999999988876654 32 2355777778999999999998764 3333
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.+. ...++++++++|+++.++.+ .+.+.+.+ .|.+++++
T Consensus 100 ~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~--~g~~~v~g 138 (155)
T cd01065 100 PLP----PSLLKPGGVVYDVVYNPLET--PLLKEARA--LGAKTIDG 138 (155)
T ss_pred CCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHH--CCCceeCC
Confidence 321 23467899999999986654 67777766 46667654
No 149
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.81 E-value=1e-08 Score=114.03 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=89.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||++++....... .....++.+++++||+|++++|.+.+++.++. ++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~ 211 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQ 211 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HH
Confidence 369999999999999999999999999999997654321111 11245789999999999999999999999885 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 212 ~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 212 LLEQLPDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HHhcCCCCcEEEECCCccccCHHHHHHHHhc
Confidence 7888999999999998888888888888876
No 150
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.80 E-value=1.9e-07 Score=99.37 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=115.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc-cCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK-DVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~-~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
...+|||||.|+||.-+|..|.++||.|.+.||+. --+..+.-|....+.+.+.++ ..|+|++|+.-.. ++.++
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsils-iekil--- 125 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILS-IEKIL--- 125 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhh-HHHHH---
Confidence 34689999999999999999999999999999976 333334457777777877664 6899999997644 66665
Q ss_pred cchhhh-CCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCCC-eEEEE----eCC----HHHHH
Q 001973 224 LGAVSA-LSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMGE-LTIMA----AGT----EESLK 292 (988)
Q Consensus 224 ~~i~~~-l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g~-l~~~~----gg~----~~~~~ 292 (988)
...-.. ++.|++++|..++.--....+.+++++ ++..+.+ |++|+.......+ +.++. .|. .+.++
T Consensus 126 atypfqrlrrgtlfvdvlSvKefek~lfekYLPk---dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE 202 (480)
T KOG2380|consen 126 ATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK---DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCE 202 (480)
T ss_pred HhcCchhhccceeEeeeeecchhHHHHHHHhCcc---ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHH
Confidence 233333 788999999999988888888899986 5777776 5555542333333 22222 243 78899
Q ss_pred HHHHHHHhcCCeEEEE
Q 001973 293 STGSVLSALSEKLYVI 308 (988)
Q Consensus 293 ~~~~ll~~~g~~v~~~ 308 (988)
.+.++|...+.+.+++
T Consensus 203 ~fleIf~cegckmVem 218 (480)
T KOG2380|consen 203 FFLEIFACEGCKMVEM 218 (480)
T ss_pred HHHHHHHhcCCeEEEE
Confidence 9999999999888776
No 151
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.78 E-value=9.4e-09 Score=114.66 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-CCchhhhccccccccCCCCcch-HHHHHHh---HHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ--FGIHPWVLYDIISNAA-GNSWIFKNYIPNLLRGDAKLHF-LNAFIQN---LGIAL 73 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~--~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~f~-l~l~~KD---l~la~ 73 (988)
++||++.++++.+++|++.|+++ +|+|++.++++++.|+ ++|++++.+.+.+.+++ . |+ +.++.|| ++++.
T Consensus 174 l~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~-~-~~~~~~~~kd~~~~~~~~ 251 (301)
T PRK09599 174 MVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDP-K-LDEISGYVEDSGEGRWTV 251 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCC-C-HHHHHHHHHhhCcHHHHH
Confidence 58999999999999999999999 9999999999999876 79999999888885442 1 33 4445555 59999
Q ss_pred HHHHhcCCCCcHHHHHHH-HHHHHhhCcCCCCCchhHHHHH
Q 001973 74 DMAKTLAFPLPLLAVAHQ-QLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 74 ~~a~~~g~~~p~~~~~~~-~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
+.|.+.|+|+|+.+.+.. .|....+.|++..|.+++.+++
T Consensus 252 ~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 252 EEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 999999999999999555 5889999999999998887764
No 152
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.73 E-value=3.6e-08 Score=109.81 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=95.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.+++||||+|.+|+.+|..+...|.+|.+||+...+- .....+....+++.+++++||+|.+.+|-+.+++.++. .+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~ 218 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AE 218 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HH
Confidence 3699999999999999999999999999999943332 12223556678999999999999999999999998885 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.+..+++|.++|+++-+..-....+.+.+.+.......+|.
T Consensus 219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV 259 (324)
T COG0111 219 ELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV 259 (324)
T ss_pred HHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC
Confidence 67789999999999998888888898888763222234543
No 153
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.71 E-value=1.5e-07 Score=101.27 Aligned_cols=273 Identities=14% Similarity=0.121 Sum_probs=164.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC--C-----eEEEEeCChh------HHHHH-Hhc--------------CCcccCCH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN--F-----TVIGYDVYRP------TLTKF-QNV--------------GGLIANSP 196 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G--~-----~V~v~dr~~~------~~~~l-~~~--------------G~~~~~s~ 196 (988)
...||+|||.|+||+++|+.+.++- + +|..|-+..+ ++.+. +.. ++.+.+|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3469999999999999999998742 2 5777754322 22222 221 23468899
Q ss_pred HHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCC----HH-HHHHHHHHHHhc-CCCceEecCcccC
Q 001973 197 AEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVS----PG-FVSQLERRLQFE-GKDLKLVDAPVSG 270 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~----p~-~~~~l~~~l~~~-~~g~~~ldapv~g 270 (988)
.+++.++|+++..+|... +..++ +++..+++++...|.++.+- ++ ..+-+.+.+.+. +-...++.+|-..
T Consensus 100 ~ea~~dADilvf~vPhQf-~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA 175 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQF-IPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA 175 (372)
T ss_pred HHHhccCCEEEEeCChhh-HHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence 999999999999999854 77777 68888899998888877432 22 133344444332 1223344444333
Q ss_pred CcccccCCCeEEEEeCCHHHHH-HHHHHHHhcCCeEEEEeC----------------CcchHHHHHHHHHHHHHHHHHHH
Q 001973 271 GVKRASMGELTIMAAGTEESLK-STGSVLSALSEKLYVIKG----------------GCGAGSGVKMANQLLAGVHIASA 333 (988)
Q Consensus 271 ~~~~a~~g~l~~~~gg~~~~~~-~~~~ll~~~g~~v~~~~g----------------~~g~a~~~Kl~~N~~~~~~~~~~ 333 (988)
.......-.-..+.+.++.... .+..+|+.--..+..+.+ ..|....+.+.+|...+++..++
T Consensus 176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl 255 (372)
T KOG2711|consen 176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGL 255 (372)
T ss_pred HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhH
Confidence 3322222222333333333333 477777765444333211 34667777788999999999999
Q ss_pred HHHHHHHHHcC-C-CHHHHHHHHHhc-------CCCccccccccccccCCCCCCCchhhHH------------HHHHHHH
Q 001973 334 AEAMAFGARLG-L-NTRVLFNIITDS-------GGSSWMFENRVPHMLDNDYTPYSALDIF------------VKDMGII 392 (988)
Q Consensus 334 ~Ea~~la~~~G-i-d~~~~~~~l~~~-------~~~s~~~~~~~~~~~~~~~~~~~~l~~~------------~kDl~~~ 392 (988)
.|+..+++.+= - .+.++.+...-+ .+.+. .....+.... -+++.. ....+.+
T Consensus 256 ~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr---~~aeafaktg----k~~~~~E~ell~Gq~~QG~~Ta~~V 328 (372)
T KOG2711|consen 256 LEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNR---KVAEAFAKTG----KSLEELEKELLNGQKLQGPATAKEV 328 (372)
T ss_pred HHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccH---HHHHHHHHcC----CCHHHHHHHhhCCCcccCcHHHHHH
Confidence 99999998853 2 455554431111 11111 1111111110 011111 2234577
Q ss_pred HHHHHhCCC--CchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 001973 393 ARECLSQRV--PLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYET 435 (988)
Q Consensus 393 ~~~a~~~gi--~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~ 435 (988)
.++.++.|+ ..|++.++++++. +++...++++.++.
T Consensus 329 y~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 329 YELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred HHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 889999998 7999999999874 45566777777764
No 154
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.70 E-value=8.3e-08 Score=106.77 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=93.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.+++||||+|.+|+++|+++...|.+|..|||++. -+.-...+....+ +.|++++||+|.+.+|...+.+.++. .+
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~ 221 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AE 221 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HH
Confidence 47999999999999999999988899999999976 2333333566666 99999999999999999999999885 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.++.+++|.++|+++-+..-....+.+.+.+.
T Consensus 222 ~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 222 ELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 78889999999999999888888999988873
No 155
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.68 E-value=6e-08 Score=115.82 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=93.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||++... +.....|....+++.+++++||+|++++|...+++.++. ++
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~ 214 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AE 214 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HH
Confidence 368999999999999999999999999999985322 223445776677899999999999999999988888874 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++|+++.+..-....+.+.+.+.
T Consensus 215 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred HHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 67789999999999999998889999998763
No 156
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.66 E-value=7e-08 Score=115.30 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=92.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||++... +.....|.... ++.+++++||+|++++|.+.+++.++. .+
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~ 215 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AE 215 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HH
Confidence 469999999999999999999999999999986432 23344566665 899999999999999999998988874 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.+++|.++|+++.+..-....+.+.+.+
T Consensus 216 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 216 ELAKMKPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred HHhcCCCCeEEEECCCCceeCHHHHHHHHhc
Confidence 7888999999999999999988999998876
No 157
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.64 E-value=1.1e-06 Score=95.01 Aligned_cols=228 Identities=16% Similarity=0.135 Sum_probs=135.3
Q ss_pred CCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 169 NFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 169 G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++|++|+|++++.+.+.+. |+..+++..++++++|+||+||+ |.++++++ ..+.+.+.++++||.++...+-.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~~- 83 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTLE- 83 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCHH-
Confidence 37899999999999888664 88888899999999999999999 77799988 56666666778888887665433
Q ss_pred HHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHH
Q 001973 248 SQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLL 325 (988)
Q Consensus 248 ~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~ 325 (988)
.+.+.+.. +..++-+ +-..+.....|...+..+. +++..+.++.+|+.+|..+..-.........+--+...+
T Consensus 84 -~l~~~~~~---~~~ivR~-mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~ 158 (245)
T TIGR00112 84 -KLSQLLGG---TRRVVRV-MPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAY 158 (245)
T ss_pred -HHHHHcCC---CCeEEEE-CCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHH
Confidence 34444432 1223321 1122333344543333332 456678899999999976543111122222222233344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccc--ccccc-CCCCCCCchhhHHHHHHHHHHHHHHhCCC
Q 001973 326 AGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFENR--VPHML-DNDYTPYSALDIFVKDMGIIARECLSQRV 401 (988)
Q Consensus 326 ~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~~--~~~~~-~~~~~~~~~l~~~~kDl~~~~~~a~~~gi 401 (988)
.+.++..+. ..+.+.|+++++..+++.+.. |...++... .+.-+ +.=.+|+.+. ...++..++.|+
T Consensus 159 ~~~~~~al~---~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT-------~~gl~~Le~~~~ 228 (245)
T TIGR00112 159 VFLFIEALA---DAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTT-------IAGLAVLEEKGV 228 (245)
T ss_pred HHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHH-------HHHHHHHHHCCh
Confidence 444333333 348889999999999888764 333222211 11111 1112344332 233455566676
Q ss_pred CchHHHHHHHHHHHH
Q 001973 402 PLHISTIAHQLFLAG 416 (988)
Q Consensus 402 ~~pi~~a~~~~~~~a 416 (988)
.--+.+++...++++
T Consensus 229 ~~~~~~a~~aa~~r~ 243 (245)
T TIGR00112 229 RGAVIEAVEAAVRRS 243 (245)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666655544
No 158
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.61 E-value=2.9e-07 Score=100.72 Aligned_cols=106 Identities=18% Similarity=0.100 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC--CCeEE-EEeCChhHHHHHHhc-CC-cccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS--NFTVI-GYDVYRPTLTKFQNV-GG-LIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
|+++||||||+|.||..++.+|.+. ++++. +|||++++.+++.+. |. ...+++++++.++|+|++|+|+... .+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e 82 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA 82 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH
Confidence 4457999999999999999999873 78865 789999998877654 53 5678999999999999999998764 44
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+. ...+..|+-++..|.......+++.+...+
T Consensus 83 ~~------~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~ 114 (271)
T PRK13302 83 IV------EPVLAAGKKAIVLSVGALLRNEDLIDLARQ 114 (271)
T ss_pred HH------HHHHHcCCcEEEecchhHHhHHHHHHHHHH
Confidence 33 223456666666676666667788777766
No 159
>PLN02928 oxidoreductase family protein
Probab=98.55 E-value=2e-07 Score=105.39 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=88.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH------------HhcCCcccCCHHHHhccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF------------QNVGGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l------------~~~G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.++|||||+|.||..+|+.|...|.+|++|||+....... ...+. ...++.+++++||+|++++|..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCC
Confidence 3699999999999999999999999999999974321111 11112 3468999999999999999998
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
...+.++. ++.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 238 ~~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 238 KETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred hHhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 88888874 567888999999999998887777888888876
No 160
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.54 E-value=2.5e-07 Score=105.21 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=85.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChH----HHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEA----QAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~----~~~~vl~ 221 (988)
.++|||||+|+||..+|+.|...|++|.+||+..... .+.....++++++++||+|++++|... ..+.++.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC
Confidence 3689999999999999999999999999999854321 122234689999999999999999765 3555553
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
++.+..+++|.++|++|.+..-....+.+.+.+
T Consensus 191 --~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 191 --EAFLASLRPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred --HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh
Confidence 456788999999999999999999999988876
No 161
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.53 E-value=3.9e-07 Score=89.23 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-HHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|||.|..|.+.|.||...|.+|++-.|..+ ..++..+.|..+ .+..|+++++|+|++.+|+..+ .+++. +
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~q-~~vy~--~ 79 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEVQ-PEVYE--E 79 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHHH-HHHHH--H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHHH-HHHHH--H
Confidence 35999999999999999999999999999988876 777888888875 5899999999999999998764 44543 6
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+++++|++++-...
T Consensus 80 ~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 80 EIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHS-TT-EEEESSS
T ss_pred HHHhhCCCCCEEEeCCc
Confidence 78999999998875443
No 162
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.53 E-value=2.8e-07 Score=106.50 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.+...|.+|.+||+++... ..+.....+++++++.||+|.+++|...+.+.++. ++
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~ 224 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AE 224 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HH
Confidence 4699999999999999999999999999999874321 12345567899999999999999999888888874 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++.+..-....+.+.+.+
T Consensus 225 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 225 ELALMKPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred HHhcCCCCeEEEECCCCcccCHHHHHHHHHc
Confidence 7788999999999999998888899998876
No 163
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.52 E-value=5.2e-07 Score=100.73 Aligned_cols=104 Identities=19% Similarity=0.151 Sum_probs=88.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.+...|.+|.+||++.... ..+.. ..++++++++||+|++++|-..+.+.++. ++
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~ 217 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YK 217 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HH
Confidence 4699999999999999999999999999999964321 12333 45899999999999999999988888875 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 218 ~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 218 ELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7788999999999999888888889888876
No 164
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.49 E-value=5.2e-07 Score=101.04 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=89.2
Q ss_pred CCeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++||||+|.+|..+|+.+. ..|.+|.+||+..... .....|... .++.+++++||+|++++|-..+.+.++. .
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~ 220 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--A 220 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--H
Confidence 469999999999999999997 7889999999874321 122335544 4899999999999999999998988874 4
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 221 ~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 221 EQFAKMKSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 67888999999999999888888889888876
No 165
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.45 E-value=1.2e-06 Score=97.96 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=86.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.|...|.+|.+||+.... .... ..++.+++++||+|++++|-..+.+.++. ++
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~ 218 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--AR 218 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HH
Confidence 469999999999999999999999999999986421 1112 34899999999999999999988888875 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 219 ~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 219 ELALMKPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7888999999999998888888888888876
No 166
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.44 E-value=1.6e-06 Score=78.66 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHH
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGII 392 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~ 392 (988)
..++.+|++.|.+.++.+++++|+..+|++.|+|..++.+.++.....+. .++.. .+++.-.++.||...+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~-------~~~~p--g~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP-------HYLRP--GPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS-------SS-S---SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc-------ccCCC--CCCCCCcchhhhHHHH
Confidence 46899999999999999999999999999999999999999887543331 11111 1346667899999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHH
Q 001973 393 ARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 393 ~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
...+++.|.+.++++++.+....
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~~ 95 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININER 95 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcCC
Confidence 99999999999999999888764
No 167
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.42 E-value=2.9e-06 Score=93.46 Aligned_cols=141 Identities=12% Similarity=0.032 Sum_probs=108.5
Q ss_pred HHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc
Q 001973 109 LVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 188 (988)
++..+++..+......+.+|.+... ...+.....++|||+|+|.+|+.+|++|...|..+..+.|++...+...+.
T Consensus 129 il~~~R~~~~g~~~~~~g~w~~~~~----~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~ 204 (336)
T KOG0069|consen 129 LLALLRRFSEGNEMVRNGGWGWAGG----WPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY 204 (336)
T ss_pred HHHHHhhhhhhhhhhhcCCccccCC----ccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh
Confidence 4444566555544445556622221 111222234699999999999999999999996677778888777777666
Q ss_pred CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 189 GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 189 G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.. ..+..+.+.++|+|++|+|....++.++. +.+..++++|.++|+++-+..-.-+.+.+.+.+
T Consensus 205 ~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 205 YAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred ccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 655 56888999999999999999999999986 678999999999999999988888889988876
No 168
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.42 E-value=8.7e-07 Score=98.99 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=87.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.+...|.+|.+||++... .. .. ...++++++++||+|++++|-....+..+. ++
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~ 218 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AE 218 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HH
Confidence 469999999999999999999999999999986431 11 11 135899999999999999999888888875 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++|+++-+..-....+.+.+.+.
T Consensus 219 ~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 219 TLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 78889999999999988888888888888763
No 169
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.41 E-value=1.8e-05 Score=81.82 Aligned_cols=127 Identities=16% Similarity=0.107 Sum_probs=83.9
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|||+|||. |.||..++..|.++||.|+ +.+||+||+|+|-.. +.+++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~-~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA-ALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH-HHHHH---HH
Confidence 58999999 9999999999999999986 258999999999765 34444 22
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCC--CeEEEEe--CCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMG--ELTIMAA--GTEESLKSTGSVLSA 300 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g--~l~~~~g--g~~~~~~~~~~ll~~ 300 (988)
+. .+++|.++++-... +. ...|+.. |++| |..+..+ ...+++. .+++..+.++.+++
T Consensus 51 ~~------~~v~Dv~SvK~~i~----~~------~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~- 112 (197)
T PRK06444 51 YD------NNFVEISSVKWPFK----KY------SGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEINEMFR- 112 (197)
T ss_pred hC------CeEEeccccCHHHH----Hh------cCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHHHHHc-
Confidence 21 37999999886422 11 2356665 7776 4333332 2233332 34566788899988
Q ss_pred cCCeEEEEeCCcchHHHHHHHHH
Q 001973 301 LSEKLYVIKGGCGAGSGVKMANQ 323 (988)
Q Consensus 301 ~g~~v~~~~g~~g~a~~~Kl~~N 323 (988)
|.+++.+ .+-..-..+-+++.
T Consensus 113 -G~~~~~~-t~eeHD~~~A~ish 133 (197)
T PRK06444 113 -GYHFVEM-TADEHDLLMSEIMV 133 (197)
T ss_pred -CCEEEEe-CHHHHHHHHHHHHH
Confidence 7777774 34444444444433
No 170
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.40 E-value=6.1e-07 Score=97.76 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=65.4
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|+|||.| .||.+||.+|.++|++|++|+++. .++++++++||+||+|++.+..++.+.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~~~v~~~~--- 220 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRPRLIDADW--- 220 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCChhcccHhh---
Confidence 35799999996 999999999999999999998763 378899999999999999988666543
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+++|.+|||+|..
T Consensus 221 ------ik~GaiVIDvgin 233 (301)
T PRK14194 221 ------LKPGAVVIDVGIN 233 (301)
T ss_pred ------ccCCcEEEEeccc
Confidence 6799999999875
No 171
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.39 E-value=1.4e-06 Score=96.06 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=83.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+|+|||+|.||..+|+.|...|.+|+++||++++.+.+.+.|.... +++.+.++++|+||.++|..-..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~------- 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLT------- 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhC-------
Confidence 469999999999999999999999999999999988877776665432 35677889999999999875311
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
+...+.++++.++||+++..-++-.+.+ .+ .|.+.+-+|
T Consensus 224 ~~~l~~~k~~aliIDlas~Pg~tdf~~A---k~--~G~~a~~~~ 262 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKPGGTDFEYA---KK--RGIKALLAP 262 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCCCCCCHHHH---HH--CCCEEEEeC
Confidence 2345667889999999987555433333 23 455555444
No 172
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.38 E-value=1.1e-06 Score=99.58 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=83.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHH----HHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQ----AESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~----~~~vl~ 221 (988)
.++|||||+|+||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++++|-... ...++.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 4699999999999999999999999999999753211 111 1246899999999999999996553 444442
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
++.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 191 --~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 191 --EKLIRSLKPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred --HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh
Confidence 456778999999999999988888888888876
No 173
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.38 E-value=2.7e-07 Score=104.40 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=91.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh----ccCCchhhhccc--cccccC---C-CCc-chHHHHHHhH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISN----AAGNSWIFKNYI--PNLLRG---D-AKL-HFLNAFIQNL 69 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~----~~~~s~~~~~~~--~~~~~~---~-~~~-f~l~l~~KDl 69 (988)
+.||+..+.+..+++|++.+++++|+|++++++++.. +++.|+.++++. +++.+| + |++ |.+.++.||+
T Consensus 204 ~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~ 283 (328)
T PRK14618 204 LGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTV 283 (328)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHH
Confidence 4689999999999999999999999999999999876 588899999884 488888 5 677 9999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 70 GIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 70 ~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
+++.+++++.++++|+.+.+.+.+. ++.|...+++.+
T Consensus 284 ~~~~~la~~~~~~~Pl~~~~~~~~~-------~~~~~~~~~~~~ 320 (328)
T PRK14618 284 KALDAWAKAHGHDLPIVEAVARVAR-------GGWDPLAGLRSL 320 (328)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 9999999999999999998888873 555666665544
No 174
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.35 E-value=9.7e-07 Score=98.85 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=84.7
Q ss_pred CCCCeEEEEccchHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHhc----C--CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQNV----G--GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~----G--~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
....+|+|||+|.||..++..+.. ...+|++|||++++.+++.+. | +..+++++++++++|+|+.|++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 345799999999999999986654 447899999999999887764 4 556789999999999998888865
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
+.++. .+.+++|+ +|++.+..+...+++...+.+ ++..|+|-
T Consensus 201 -~pvl~-----~~~l~~g~-~i~~ig~~~~~~~El~~~~~~--~a~~~vD~ 242 (314)
T PRK06141 201 -EPLVR-----GEWLKPGT-HLDLVGNFTPDMRECDDEAIR--RASVYVDT 242 (314)
T ss_pred -CCEec-----HHHcCCCC-EEEeeCCCCcccccCCHHHHh--cCcEEEcC
Confidence 23331 24577887 778887777777787766655 33456664
No 175
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.35 E-value=2.7e-06 Score=92.87 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=77.4
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCe-EEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFT-VIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|||||||+|.||..++..|.+. +++ +.+||+++++.+.+.+. |....+++++++.++|+|++|+|... ..++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~-~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNA-VEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHH-HHHHH--
Confidence 6999999999999999999886 355 66799999998887653 56677899998899999999998654 44443
Q ss_pred ccchhhhCCCCCEEEecCC---CCHHHHHHHHHHHHhc
Q 001973 223 DLGAVSALSSGASIILSST---VSPGFVSQLERRLQFE 257 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st---~~p~~~~~l~~~l~~~ 257 (988)
..+ +..|+-++.+|+ ..+...+++.+...+.
T Consensus 79 -~~a---l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 79 -PKS---LENGKDVIIMSVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred -HHH---HHcCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence 222 334555555665 3566677777776663
No 176
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.33 E-value=1.5e-05 Score=92.69 Aligned_cols=199 Identities=8% Similarity=0.043 Sum_probs=128.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
+++|++.+++++.+.|+..++++.|+|.+.+++++... |.+..+.|-...| .-+-||.......+++.|
T Consensus 209 l~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~----~~~~~~~pG~vGG-------~ClpkD~~~L~~~a~~~g 277 (425)
T PRK15182 209 VIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFLPFRPGLVGG-------HCIGVDPYYLTHKSQGIG 277 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC----CCcccCCCCcccc-------ccccccHHHHHHHHHhcC
Confidence 57999999999999999999999999999999995433 4344333333222 246699999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEcc------
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGL------ 154 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~------ 154 (988)
+.+++..++++.=+...+ -+++.+.+..+.. .+ .-+..||+|+|+
T Consensus 278 ~~~~l~~~a~~iN~~~~~---------~v~~~~~~~l~~~-----~~---------------~~~~~~V~vlGlafK~~t 328 (425)
T PRK15182 278 YYPEIILAGRRLNDNMGN---------YVSEQLIKAMIKK-----GI---------------NVEGSSVLILGFTFKENC 328 (425)
T ss_pred CCcHHHHHHHHHHHHHHH---------HHHHHHHHHHHhc-----CC---------------CCCCCEEEEEEeEeCCCC
Confidence 999888887765442222 1333332211100 00 001248999998
Q ss_pred ----chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhC
Q 001973 155 ----GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSAL 230 (988)
Q Consensus 155 ----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l 230 (988)
..-+..++..|.+.|.+|.+||..-..-+.....+....+ ..+.+++|.|++++..+. .+..-. +.+....
T Consensus 329 ~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~--~~~~~~ad~vvi~t~h~~-f~~~~~--~~~~~~~ 403 (425)
T PRK15182 329 PDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS--EVKSSHYDAIIVAVGHQQ-FKQMGS--EDIRGFG 403 (425)
T ss_pred CccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch--hhhhcCCCEEEEccCCHH-hhcCCH--HHHHHhc
Confidence 4578899999999999999999752211111122321111 224678999999998876 332200 2233333
Q ss_pred CCCCEEEecCCCCH
Q 001973 231 SSGASIILSSTVSP 244 (988)
Q Consensus 231 ~~g~ivId~st~~p 244 (988)
+...+|+|+-+..+
T Consensus 404 ~~~~~iiD~r~~~~ 417 (425)
T PRK15182 404 KDKHVLYDLKYVLP 417 (425)
T ss_pred CCCCEEEECCCCCC
Confidence 33458999876654
No 177
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.32 E-value=4.9e-06 Score=86.84 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=76.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.++|+|+|+|+||..+|+.|.+.|++|+++|+++++.+++.+. |....++ .+.. .+||+++.|.......++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~---- 102 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDT---- 102 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHH----
Confidence 3689999999999999999999999999999999998888766 6665544 4444 4899999775543222222
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
++.+ +.++|+...+.. -+..+-.+.+.+ +|+.|++
T Consensus 103 ---~~~l-~~~~v~~~AN~~-~~~~~~~~~L~~--~Gi~~~P 137 (200)
T cd01075 103 ---IPQL-KAKAIAGAANNQ-LADPRHGQMLHE--RGILYAP 137 (200)
T ss_pred ---HHHc-CCCEEEECCcCc-cCCHhHHHHHHH--CCCEEeC
Confidence 2334 356777776653 222445566666 6788875
No 178
>PLN02306 hydroxypyruvate reductase
Probab=98.25 E-value=4.8e-06 Score=95.16 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=87.8
Q ss_pred CCeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhH-HHHH-HhcC------------CcccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPT-LTKF-QNVG------------GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l-~~~G------------~~~~~s~~e~~~~aDvV~l~v 210 (988)
.++|||||+|.+|+.+|+.|. ..|.+|.+||++... .... ...| .....++++++++||+|++++
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC
Confidence 469999999999999999986 789999999988642 1111 1111 123468999999999999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
|-....+..+. ++.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 245 Plt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 245 VLDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CCChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99888888875 567888999999999998887777888888876
No 179
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.23 E-value=7.7e-06 Score=91.57 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHHHh-hhcccccccccccccCchhhH-HHhhhc--CCCCCeEEEEccchHHH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVWEN-VLGVNITDAANLEAYKPEELA-KQITAK--SNSVTRVGFIGLGAMGF 159 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~-~~~~m~--~~~~~kIgiIG~G~mG~ 159 (988)
-+...+++.|+.|.+.|.-+.....+++..-+ --.++..........+..-.. +..... .-..++|+|||+|.||.
T Consensus 112 qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~ 191 (311)
T cd05213 112 QILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGE 191 (311)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHH
Confidence 58888999999999988776666555543211 111111111111111111111 111111 12357999999999999
Q ss_pred HHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCccc--CCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhC-CCCC
Q 001973 160 GMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSAL-SSGA 234 (988)
Q Consensus 160 ~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l-~~g~ 234 (988)
.++..|...| ++|+++||++++...+.+. |.... ++..+.+.++|+||.|++.+.. ...+ ....... .++.
T Consensus 192 ~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~---~~~~~~~~~~~~ 267 (311)
T cd05213 192 LAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV---ERAMKKRSGKPR 267 (311)
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH---HHHHhhCCCCCe
Confidence 9999999866 7899999999988777654 54322 3456778899999999998764 2222 1222222 2578
Q ss_pred EEEecCC
Q 001973 235 SIILSST 241 (988)
Q Consensus 235 ivId~st 241 (988)
++||++.
T Consensus 268 ~viDlav 274 (311)
T cd05213 268 LIVDLAV 274 (311)
T ss_pred EEEEeCC
Confidence 9999983
No 180
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=4.2e-06 Score=91.54 Aligned_cols=75 Identities=24% Similarity=0.196 Sum_probs=64.4
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYD-VYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
..++|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++.||+|++|++.+..++.++
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~-- 219 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW-- 219 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe--
Confidence 357999999 99999999999999999999995 654 46788899999999999988665543
Q ss_pred ccchhhhCCCCCEEEecCCCC
Q 001973 223 DLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~ 243 (988)
+++|++|||++...
T Consensus 220 -------lk~GavVIDvGin~ 233 (296)
T PRK14188 220 -------IKPGATVIDVGINR 233 (296)
T ss_pred -------ecCCCEEEEcCCcc
Confidence 67899999998753
No 181
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.17 E-value=3.4e-06 Score=83.98 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=74.9
Q ss_pred EEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC--------------CHHHHhccCcEEEEEcCChH
Q 001973 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN--------------SPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~--------------s~~e~~~~aDvV~l~vp~~~ 214 (988)
|.|+|+|.||..+|..|++.|++|+++.|++ +.+.+++.|..+.. ...+....+|+||+|++..+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 7899999999999999999999999999999 88888887754321 22345678999999999866
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRL 254 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l 254 (988)
+++++ +.+.+.+.+++.|+-+.++ .+..+.+.+.+
T Consensus 80 -~~~~l---~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~ 114 (151)
T PF02558_consen 80 -LEQAL---QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYF 114 (151)
T ss_dssp -HHHHH---HHHCTGEETTEEEEEESSS-SSHHHHHHCHS
T ss_pred -hHHHH---HHHhhccCCCcEEEEEeCC-CCcHHHHHHHc
Confidence 56666 5677788887666666554 33334555544
No 182
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.17 E-value=5.6e-06 Score=92.22 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=93.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-CCchhhhccccccccCCCCc-chHH-HHHHhHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQF--GIHPWVLYDIISNAA-GNSWIFKNYIPNLLRGDAKL-HFLN-AFIQNLGIALDM 75 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~--Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~-f~l~-l~~KDl~la~~~ 75 (988)
++||.+.++.+++++|++.|++++ |+|++.+.++++.|+ ++||+++.+.+.+.++++.+ |... ...||.+.+.+.
T Consensus 172 ~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~ 251 (298)
T TIGR00872 172 MVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIA 251 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHH
Confidence 589999999999999999999998 579999999999987 69999999988888888777 7644 689999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 76 AKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 76 a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
|.+.|+|+|..+.+...+..-.. .+.-...++..+|..+|.
T Consensus 252 a~~~g~p~P~~~~al~~~~~~~~---~~~~~~~~~~~~r~~fg~ 292 (298)
T TIGR00872 252 AIDLGVPAPVIATSLQSRFASRD---LDDFANKVLAALRKEFGG 292 (298)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC---CCCcHHHHHHHHHHhhCC
Confidence 99999999988885433332222 112245677878877764
No 183
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.16 E-value=1.2e-05 Score=81.44 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=127.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhcC--------------CcccCCHHHHh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-----------QNVG--------------GLIANSPAEAA 200 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G--------------~~~~~s~~e~~ 200 (988)
.-||+|+|.|.+|+.+|..|+..||+|..||+.++.+... .+.| +..++++.|++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 3589999999999999999999999999999998765432 2222 23588999999
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC-CCceEecCcccCCcccccCCC
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG-KDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~-~g~~~ldapv~g~~~~a~~g~ 279 (988)
+++=.|--|+|..-.++.-+. +.+ ..+...++|+..||+.--.+.--+....... .-.|.+..|.+-.-..
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly--~ql-D~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvE----- 154 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLY--KQL-DEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVE----- 154 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHH--HHH-HHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchhe-----
Confidence 999999999998876655443 233 3333445555555443222222222211100 0123333332221111
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 280 LTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 280 l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
++-.--..++..++.+.++..+|.+.+.+..+++ ..+.|-. ..+.++|..++....+++..++..+++.|.+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~-----Gf~lnri---q~Ailne~wrLvasGil~v~dvD~VmS~GLG 226 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREIL-----GFALNRI---QYAILNETWRLVASGILNVNDVDAVMSAGLG 226 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccc-----cceeccc---cHHHHHHHHHHHHccCcchhhHHHHHhcCCC
Confidence 1111124678899999999999976554322221 1222322 3356899999999999999999988888766
Q ss_pred Ccccc
Q 001973 360 SSWMF 364 (988)
Q Consensus 360 ~s~~~ 364 (988)
....+
T Consensus 227 ~RYAf 231 (313)
T KOG2305|consen 227 PRYAF 231 (313)
T ss_pred cchhc
Confidence 54443
No 184
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.13 E-value=1.4e-05 Score=88.74 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=76.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..|++|||.|.+|..++..|...|.+|+++||++++.+.....|.+.. +++.+.+.++|+||.++|.....
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~------- 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT------- 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh-------
Confidence 469999999999999999999999999999999988877777776643 35678889999999999864322
Q ss_pred cchhhhCCCCCEEEecCCCCHH
Q 001973 224 LGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~ 245 (988)
++..+.++++.+|||+++...+
T Consensus 225 ~~~l~~~~~g~vIIDla~~pgg 246 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKPGG 246 (296)
T ss_pred HHHHHcCCCCcEEEEEccCCCC
Confidence 2345667899999999886533
No 185
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.10 E-value=9.9e-05 Score=77.16 Aligned_cols=245 Identities=20% Similarity=0.241 Sum_probs=153.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEEeCChhHH-HHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGYDVYRPTL-TKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|+|||||.|+|..++++.+.+.|. +++.+-.+.... ..+...|...+.+..+.++.+|++|+++.. ..+..++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp-~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKP-QVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecc-hhHHHHh-
Confidence 589999999999999999999883 577776633333 337777888777779999999999999986 4577787
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC---CHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG---TEESLKSTGSVL 298 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 298 (988)
.++......+++++.+--+..-. .+...+.. ..+++-. +...|.....|.. ++.-| ..+..+.++.++
T Consensus 79 --s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~~---~~rviRv-mpNtp~~v~eg~s-v~~~g~~~~~~D~~l~~~ll 149 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGKTLS--SLESKLSP---PTRVIRV-MPNTPSVVGEGAS-VYAIGCHATNEDLELVEELL 149 (267)
T ss_pred --hcCccccccceEEEEEeecccHH--HHHHhcCC---CCceEEe-cCCChhhhhcCcE-EEeeCCCcchhhHHHHHHHH
Confidence 45555567888998765443322 23333331 1222221 2233444555553 44433 356668899999
Q ss_pred HhcCCeEEE-------EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccc--ccc
Q 001973 299 SALSEKLYV-------IKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFE--NRV 368 (988)
Q Consensus 299 ~~~g~~v~~-------~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~--~~~ 368 (988)
+.+|...-+ +.|=.|++-+ +...++.++++. +.+.|++.+..+++-.+.. +...+.. ..-
T Consensus 150 ~~vG~~~evpE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qH 219 (267)
T KOG3124|consen 150 SAVGLCEEVPEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQH 219 (267)
T ss_pred HhcCcceeCcHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCC
Confidence 999864322 0122333333 333333333333 7899999998888776653 3222322 223
Q ss_pred ccccCCCC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 369 PHMLDNDY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 369 ~~~~~~~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
|..++.+. +|+.+ .-+.....++-|++.-++.++.+.-.++.+-
T Consensus 220 P~~Lkd~V~SPgG~-------TI~glh~LE~ggfRs~linaVeaa~~r~~el 264 (267)
T KOG3124|consen 220 PAQLKDDVCSPGGT-------TIYGLHALEKGGFRSGLINAVEAATKRAREL 264 (267)
T ss_pred cHHHhCCCCCCCcc-------hHHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Confidence 55665553 45433 1244566678888888888888777766654
No 186
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.10 E-value=7.6e-06 Score=91.69 Aligned_cols=105 Identities=15% Similarity=-0.027 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhcC
Q 001973 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~g 80 (988)
+||+ +.+.++||+.|+++.|+|++.+.++++.+.+.+|++ ++|.++.++|.| |...++.||.+++.+++++.+
T Consensus 190 ~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~ 263 (308)
T PRK06129 190 LNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERG 263 (308)
T ss_pred HHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccC
Confidence 4564 448999999999999999999999999999999977 799999888988 999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHH
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKV 112 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~ 112 (988)
.|.|++.....-....++.-++..++..+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 264 QPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred CCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99998876666666667767787888776554
No 187
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.05 E-value=7.3e-06 Score=92.61 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cCCchhhhccc--cccccCCCC-----c-chHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNA----AGNSWIFKNYI--PNLLRGDAK-----L-HFLNAFIQN 68 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~----~~~s~~~~~~~--~~~~~~~~~-----~-f~l~l~~KD 68 (988)
+++|++.+....+++|++.++++.|+|++.+.+++..+ +..|+..+++. ..+..+... + +.+.++.||
T Consensus 205 ~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd 284 (325)
T PRK00094 205 LGDNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRT 284 (325)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHH
Confidence 46899999999999999999999999999999987655 44455555554 344433311 1 346788999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 69 LGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 69 l~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
++++.++++++|+++|+.+.+.+.|. .+.+...+++.+
T Consensus 285 ~~~~~~~a~~~~~~~P~~~~~~~~~~-------~~~~~~~~~~~~ 322 (325)
T PRK00094 285 AKAVYELAKKLGVEMPITEAVYAVLY-------EGKDPREAVEDL 322 (325)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHc-------CCCCHHHHHHHH
Confidence 99999999999999999999999984 556666665544
No 188
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.04 E-value=6.8e-06 Score=92.07 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHH--------------
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAF-------------- 65 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~-------------- 65 (988)
+.+|++.+.++.+++|++.++++.|++++.++++ .|.+++++ ..+.+.+++|++ |.+.++
T Consensus 181 l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~ 255 (308)
T PRK14619 181 LGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLLA---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTA 255 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhhe---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEe
Confidence 4689999999999999999999999999999994 47788775 335788899988 888888
Q ss_pred --HHhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 66 --IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 66 --~KDl~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.||++++.+++++.|+++|+...+.++|. ++.+...+++.+
T Consensus 256 eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~~~~~~l 298 (308)
T PRK14619 256 EGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQQALEEL 298 (308)
T ss_pred ecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHHHHHHHH
Confidence 99999999999999999999999999994 556666665544
No 189
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.03 E-value=1.4e-05 Score=87.64 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=79.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----CCcccCCHHH-HhccCcEEEEEcCChH--HHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----GGLIANSPAE-AAKDVGVLVIMVTNEA--QAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G~~~~~s~~e-~~~~aDvV~l~vp~~~--~~~~v 219 (988)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+.+.+. +.....+..+ ...++|+||.|+|... ..+.+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~ 197 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEP 197 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCC
Confidence 589999999999999999999999999999999988776653 3222223333 2357999999999752 11111
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.. ....++++.+++|+++.++.+ .+.+...+ +|.+++++
T Consensus 198 ~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~--~G~~~vdG 236 (270)
T TIGR00507 198 PV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKS--LGTKTIDG 236 (270)
T ss_pred CC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHH--CCCeeeCC
Confidence 10 124577899999999988776 46666655 46666654
No 190
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.94 E-value=7.3e-05 Score=71.15 Aligned_cols=104 Identities=25% Similarity=0.294 Sum_probs=80.2
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCeE-EEEeCChhHHHHHH-hcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFTV-IGYDVYRPTLTKFQ-NVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~-~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
+||||||+|.+|......+.+. ++++ .++|+++++.+.+. ..|....+|.+++++ +.|+|++++|+....+.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 3899999999999999999887 3564 57899999988865 458888999999988 7899999999987655543
Q ss_pred ccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHhc
Q 001973 221 YGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQFE 257 (988)
Q Consensus 221 ~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~~ 257 (988)
.. +..| .++++. -+..+...+++.+...+.
T Consensus 81 ----~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 81 ----KA---LEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp ----HH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred ----HH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 22 2233 455554 245788888998887764
No 191
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=2.2e-05 Score=85.23 Aligned_cols=76 Identities=24% Similarity=0.215 Sum_probs=64.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|+|||. |.||.+||..|.++|++|++|... +.++++.+++||+||++++.+..++...
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~--- 219 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF--- 219 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH---
Confidence 3479999999 999999999999999999999421 3378889999999999999988665443
Q ss_pred cchhhhCCCCCEEEecCCCC
Q 001973 224 LGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~ 243 (988)
+++|.++||++...
T Consensus 220 ------ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ------VKEGAVVIDVGMNR 233 (284)
T ss_pred ------ccCCcEEEEeccee
Confidence 67999999998653
No 192
>PLN00203 glutamyl-tRNA reductase
Probab=97.89 E-value=7.5e-05 Score=88.44 Aligned_cols=131 Identities=19% Similarity=0.169 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHH-H--hhh--cccccccccccccCchhhHHHhhhc-CCCCCeEEEEccchH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVW-E--NVL--GVNITDAANLEAYKPEELAKQITAK-SNSVTRVGFIGLGAM 157 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~-~--~~~--g~~~~~~~~~~~~~~~~~~~~~~m~-~~~~~kIgiIG~G~m 157 (988)
-+...+++.|+.|.+.|.-+.....+++.- . ++. ...+.....--.+..-+..+..-.. .-...+|+|||+|.|
T Consensus 198 QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~m 277 (519)
T PLN00203 198 QILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKM 277 (519)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH
Confidence 478888999999998876655555554431 1 111 0111111111011111122111000 023579999999999
Q ss_pred HHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--CCc----ccCCHHHHhccCcEEEEEcCChH
Q 001973 158 GFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--GGL----IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 158 G~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--G~~----~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|..++.+|...|. +|+++||++++.+.+.+. +.. ..++..+++.++|+||+|++.+.
T Consensus 278 G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 278 GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 9999999999996 799999999999888764 321 23567788899999999987654
No 193
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.80 E-value=7.9e-05 Score=83.90 Aligned_cols=95 Identities=24% Similarity=0.245 Sum_probs=73.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHh----cC--CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQN----VG--GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~----~G--~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
+...++||||+|.||...+..|.. ...+|.+|||++++.+.+.+ .| +..++++++++++||+|++|+|+..
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~- 204 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK- 204 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 345789999999999997777754 44689999999999887654 25 3568899999999999999998743
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.++. ...+++|..|...++..|..
T Consensus 205 --P~~~-----~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 205 --PVVK-----ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred --cEec-----HHHcCCCCEEEecCCCCccc
Confidence 2221 23568898888888776644
No 194
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.80 E-value=6.9e-05 Score=74.18 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=68.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
-+++.|+|.|..|..+|+.|...|-+|++++++|-+.-+....|..+. +.++++..+|++|+++.....+. .+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~------~e 95 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVIT------GE 95 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-------HH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccC------HH
Confidence 468999999999999999999999999999999999888888898765 68899999999999987644222 13
Q ss_pred hhhhCCCCCEEEecCCCCHH
Q 001973 226 AVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~ 245 (988)
..+.+++|.++.+.+...-+
T Consensus 96 ~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 96 HFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp HHHHS-TTEEEEESSSSTTS
T ss_pred HHHHhcCCeEEeccCcCcee
Confidence 34568899999988876543
No 195
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.80 E-value=2.9e-05 Score=75.82 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=65.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhcC------CcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNVG------GLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~G------~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
..++.|||+|.||.+++..|.+.|.+ |+++||+.++++++.+.- ....++..+...++|+||.|+|.+..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~--- 88 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP--- 88 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST---
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc---
Confidence 46999999999999999999999976 999999999999887642 12345666778899999999998753
Q ss_pred HHccccchhhhCCC-CCEEEecC
Q 001973 219 VLYGDLGAVSALSS-GASIILSS 240 (988)
Q Consensus 219 vl~~~~~i~~~l~~-g~ivId~s 240 (988)
.+. +.......+ -++++|++
T Consensus 89 ~i~--~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 89 IIT--EEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp SST--HHHHTTTCHHCSEEEES-
T ss_pred ccC--HHHHHHHHhhhhceeccc
Confidence 110 111222221 14999997
No 196
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.77 E-value=7.3e-05 Score=86.40 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++|+|||.|.+|..+|..|...|.+|+++++++.+.......|... .+..++++.+|+|++++.+.. ++. .
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~----iI~--~ 325 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKD----IIT--L 325 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCccc----ccC--H
Confidence 346999999999999999999999999999999988775555567654 468899999999999976533 331 2
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
.....+++|.++++.+...
T Consensus 326 e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 326 EHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HHHhccCCCcEEEEcCCCc
Confidence 4456789999999998874
No 197
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.77 E-value=0.00034 Score=81.54 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
+++|++.+++++.+.|+..++++.|+|++.+.++++.-+.- ....|-.= |.=.-+-||..+.. ...+
T Consensus 213 l~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~ri----~~l~pG~G------~GG~ClpkD~~~L~---~~~~ 279 (415)
T PRK11064 213 LTENSFRDVNIAFANELSLICADQGINVWELIRLANRHPRV----NILQPGPG------VGGHCIAVDPWFIV---AQNP 279 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCc----ccCCCCCC------CCCccccccHHHHH---HhcC
Confidence 57999999999999999999999999999999998654321 10111110 22334567776543 3445
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc-----
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG----- 155 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G----- 155 (988)
...++.+++.+.=+...+ -+++.+.+.....+. +. ....+..+|+|+|+-
T Consensus 280 ~~~~l~~~a~~~N~~~~~---------~v~~~~~~~l~~~l~---------------~~-~~~~~~~~v~vlGlafK~~t 334 (415)
T PRK11064 280 QQARLIRTAREVNDGKPH---------WVIDQVKAAVADCLA---------------AT-DKRASEVKIACFGLAFKPNI 334 (415)
T ss_pred CccHHHHHHHHHHHHhHH---------HHHHHHHHHHhhhhh---------------hh-ccCcCCCEEEEEeeEECCCC
Confidence 455555554433221111 122222211100000 00 000122589999984
Q ss_pred -----hHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChH
Q 001973 156 -----AMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 156 -----~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
.-...++..|.+.| .+|.+||..-........ +.....++.++++++|.|+++++.+.
T Consensus 335 ~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~ad~vvi~t~~~~ 398 (415)
T PRK11064 335 DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLD-GLVTLVSLDEALATADVLVMLVDHSQ 398 (415)
T ss_pred cchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhcc-CceeeCCHHHHHhCCCEEEECCCCHH
Confidence 46679999999996 999999976433221111 12234788899999999999999865
No 198
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.74 E-value=7.2e-05 Score=84.96 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=72.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEE------EeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIG------YDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v------~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
++|+|||+|..|.+.|.+|...|++|++ .|.+....+.+.+.|..+ .++.|+++.||+|++.+|+.. -..+.
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~-q~~v~ 114 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ-HSDVV 114 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH-HHHHH
Confidence 6999999999999999999999999994 343345566666778865 679999999999999999984 44454
Q ss_pred ccccchhhhCCCCCEEEec
Q 001973 221 YGDLGAVSALSSGASIILS 239 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~ 239 (988)
+.+.+.+++|.++.-.
T Consensus 115 ---~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 115 ---RAVQPLMKQGAALGYS 130 (487)
T ss_pred ---HHHHhhCCCCCEEEec
Confidence 6889999999887643
No 199
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.74 E-value=0.00062 Score=78.41 Aligned_cols=167 Identities=10% Similarity=0.001 Sum_probs=115.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
+++|++.+++++.+.|...++++.|+|.+.+.++++.-+.-++ ..++. .+ |.=.-+-||.......+ .
T Consensus 198 l~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~ri~~-------~~l~p--G~G~GG~ClpkD~~~L~~~~--~ 266 (388)
T PRK15057 198 LFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGN-------HYNNP--SFGYGGYCLPKDTKQLLANY--Q 266 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCCC-------ccCCC--CCCCCCcChhhhHHHHHHhc--c
Confidence 5799999999999999999999999999999999976542221 11100 11 33344668887765444 5
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc----
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG---- 155 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G---- 155 (988)
++++++.+.+.+.=+...+ .+++.+.+. ...+|+|.|+.
T Consensus 267 ~~~~~l~~~~~~~N~~~~~---------~~~~~~~~~----------------------------~~~~i~vlGlafK~~ 309 (388)
T PRK15057 267 SVPNNLISAIVDANRTRKD---------FIADAILSR----------------------------KPQVVGIYRLIMKSG 309 (388)
T ss_pred CCCcHHHHHHHHHHHHhHH---------HHHHHHHHh----------------------------cCCEEEEEcceeCCC
Confidence 5666766666554332221 133333221 11378888884
Q ss_pred ------hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 156 ------AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 156 ------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
.-...++..|.+.|.+|.+||..-.... ..+...++++.++++++|.|++..-.+. ++.+
T Consensus 310 t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 375 (388)
T PRK15057 310 SDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAEE-LKDV 375 (388)
T ss_pred CCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcHH-HHhh
Confidence 4567899999999999999997633322 3378889999999999999999887754 4443
No 200
>PLN02494 adenosylhomocysteinase
Probab=97.73 E-value=0.0002 Score=82.61 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=73.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|+|+|+|.+|..+|..+...|.+|+++++++.+.......|.... +..++++.+|+||++..+...+. ..
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~------~e 326 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIM------VD 326 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchH------HH
Confidence 469999999999999999999999999999999987666666677644 67889999999999777654321 23
Q ss_pred hhhhCCCCCEEEecCCCC
Q 001973 226 AVSALSSGASIILSSTVS 243 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~ 243 (988)
....+++|.++++.+...
T Consensus 327 ~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 327 HMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred HHhcCCCCCEEEEcCCCC
Confidence 456788999999998743
No 201
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.72 E-value=0.00019 Score=79.97 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=51.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhc--------CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTK----FQNV--------GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~----l~~~--------G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.||..+|..|+.+|+ +|.++|++.+..+. +.+. .++.+++.++ +++||+||++++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 699999999999999999999887 89999997665431 1111 1234567776 78999999999854
No 202
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.72 E-value=0.00027 Score=72.41 Aligned_cols=102 Identities=20% Similarity=0.291 Sum_probs=72.3
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCe-EEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFT-VIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|+||+||+|.+|..+...+... .++ +.+|||+.++...+.+. +...++++.|.+++.|+++-|-.. +++++..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHHh--
Confidence 4899999999999999877653 354 89999999999877654 556678899999999999999865 4455543
Q ss_pred ccchhhhCCCCCEEEecCCC---CHHHHHHHHHHHH
Q 001973 223 DLGAVSALSSGASIILSSTV---SPGFVSQLERRLQ 255 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~ 255 (988)
.+.|..|.-++.+|.+ .|+...++.+...
T Consensus 78 ----~~~L~~g~d~iV~SVGALad~~l~erl~~lak 109 (255)
T COG1712 78 ----PKILKAGIDVIVMSVGALADEGLRERLRELAK 109 (255)
T ss_pred ----HHHHhcCCCEEEEechhccChHHHHHHHHHHh
Confidence 3445555555555543 3444444444333
No 203
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.71 E-value=0.0001 Score=70.53 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=61.9
Q ss_pred eEEEEc-cchHHHHHHHHHHhC-CCeEEEE-eCChhHHHHHHhcCCc--------cc-CCHHHHhccCcEEEEEcCChHH
Q 001973 148 RVGFIG-LGAMGFGMATHLLRS-NFTVIGY-DVYRPTLTKFQNVGGL--------IA-NSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~G~~--------~~-~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
||+||| .|.+|..++..|.+. ++++... ++++++.+.+...+.. .. .+.+ ..++|+||+|+|+...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE--ELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh--hcCCCEEEEcCCcHHH
Confidence 699999 599999999999985 7886665 6665444444333211 11 1222 2489999999999876
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
.+.+. .+...+.+|+++||+|+..
T Consensus 79 ~~~~~----~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 79 KEIAP----LLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHH----HHHhhhcCCCEEEECCccc
Confidence 55443 3345568999999999863
No 204
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.70 E-value=0.00029 Score=80.72 Aligned_cols=93 Identities=18% Similarity=0.093 Sum_probs=75.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
...+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......|..+. +.+++++.+|++|.++.+...+..
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~------ 266 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRG------ 266 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHH------
Confidence 3569999999999999999999999999999999988777677777544 567889999999999887554432
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
.....+++|.++++.+....
T Consensus 267 ~~~~~mK~GailiN~G~~~~ 286 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDV 286 (406)
T ss_pred HHHhcCCCCcEEEEECCCCc
Confidence 23456889999999887654
No 205
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.66 E-value=0.00024 Score=81.83 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=75.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
...+|+|+|.|.+|..+|..|...|.+|+++|+++.+.......|... .+..++++.+|+||.++.+...+..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~------ 283 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITA------ 283 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHH------
Confidence 356999999999999999999999999999999998877666667664 4678889999999999876553332
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
.....+++|.++++.+....
T Consensus 284 ~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 284 EHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHhcCCCCCEEEEcCCCCC
Confidence 33566889999999887654
No 206
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.64 E-value=0.0003 Score=67.55 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=65.9
Q ss_pred CeEEEEcc-chHHHHHHHHHHh-CCCe-EEEEeCChh-HH----HHH---HhcCCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLR-SNFT-VIGYDVYRP-TL----TKF---QNVGGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~-~G~~-V~v~dr~~~-~~----~~l---~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|||+|+|+ |.||+.+++.+.+ .+++ +-++|++++ .. .++ ...|..+.++++++.+.+|++|-+. .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 48999999 9999999999998 7788 555688872 11 111 1346778899999999999999888 5555
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ 255 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~ 255 (988)
+...+ +...+ .|..+|..+|.......+..+.+.
T Consensus 80 ~~~~~---~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 80 VYDNL---EYALK---HGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHHHH---HHHHH---HT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred hHHHH---HHHHh---CCCCEEEECCCCCHHHHHHHHHHh
Confidence 55554 23333 367777777776544433333343
No 207
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.64 E-value=0.00057 Score=75.71 Aligned_cols=99 Identities=13% Similarity=0.196 Sum_probs=68.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCCh-hHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYR-PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++||+|||+|+||..++..+.++ ++++. +||+++ ++.. ...+.....+..+...+.|+|++|+|+....+.+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~-- 78 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA-- 78 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH--
Confidence 47999999999999999999876 67866 479985 4433 12244445677777789999999999876554443
Q ss_pred ccchhhhCCCCCEEEecCCC---CHHHHHHHHHH
Q 001973 223 DLGAVSALSSGASIILSSTV---SPGFVSQLERR 253 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~ 253 (988)
+.+..|.-+|++... .|...+.+.+.
T Consensus 79 -----~~L~aG~NVV~s~~~h~~~p~~~~~ld~A 107 (324)
T TIGR01921 79 -----PYFAQFANTVDSFDNHRDIPRHRQVMDAA 107 (324)
T ss_pred -----HHHHcCCCEEECCCcccCCHHHHHHHHHH
Confidence 445677777776532 23444444443
No 208
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.64 E-value=0.0002 Score=76.58 Aligned_cols=89 Identities=27% Similarity=0.280 Sum_probs=73.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|||.|+-|.+-|.||..+|.+|++--|.-.. .+...+.|.. +.+.+|+++.+|+|++-+|+..+ .+|+. +
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~--~ 93 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE--K 93 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH--H
Confidence 359999999999999999999999998877665544 6777777877 46899999999999999999764 44552 5
Q ss_pred chhhhCCCCCEEEe
Q 001973 225 GAVSALSSGASIIL 238 (988)
Q Consensus 225 ~i~~~l~~g~ivId 238 (988)
.+.+.|++|..+.-
T Consensus 94 ~I~p~Lk~G~aL~F 107 (338)
T COG0059 94 EIAPNLKEGAALGF 107 (338)
T ss_pred HhhhhhcCCceEEe
Confidence 78899999886553
No 209
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.61 E-value=0.00016 Score=81.13 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hc----C--Cc--ccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----NV----G--GL--IANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~----G--~~--~~~s~~e~~~~aDvV~l~vp~ 212 (988)
||||+|||+|.||..+|..++..|+ +|.++|+++++.+... +. + .+ .+++. +.+++||+||+++..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 3699999999999999999999876 9999999887654322 11 1 12 23455 557899999999743
No 210
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00035 Score=79.14 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=80.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcC---Cc-------ccCCHHHHhccCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVG---GL-------IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G---~~-------~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
||||-|||+|.+|+.+|..|+++| ++|++-||++++.+++.... +. -.+.+.+++++.|+||.|.|...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 369999999999999999999999 99999999999999987653 21 12345678889999999999877
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
... ++ ...+..|.-++|.|-..+.. ..+.+...+
T Consensus 81 ~~~-i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~ 114 (389)
T COG1748 81 DLT-IL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKK 114 (389)
T ss_pred hHH-HH------HHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence 543 22 12345688899999887775 666666555
No 211
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.60 E-value=0.00029 Score=82.41 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCcc--cCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGLI--ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~~--~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
..++|+|||+|.||..++..|...|. +|+++||++++...+.+. |... ..+..+.+.++|+||.|++.+.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 34699999999999999999999997 799999999998776654 4322 2455677889999999998765
No 212
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.59 E-value=0.0029 Score=74.51 Aligned_cols=201 Identities=9% Similarity=0.022 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
++.|...++.++-+-|--.++++.|+|...+.++++.-+--++.+. .|-+- |.=.-+-||.......+++.|
T Consensus 217 ~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~rig~~~l--~PG~G------~GG~ClpkD~~~L~~~a~~~g 288 (473)
T PLN02353 217 LAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRIGPKFL--NASVG------FGGSCFQKDILNLVYICECNG 288 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCcCCCCCC--CCCCC------CCCcchhhhHHHHHHHHHHcC
Confidence 3679999999999999999999999999999988865532111001 01110 223346699999999999999
Q ss_pred CC--CcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEcc----
Q 001973 81 FP--LPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGL---- 154 (988)
Q Consensus 81 ~~--~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~---- 154 (988)
++ +++...+.+ .+..+ ...+++.+.+.... .....||+|+|+
T Consensus 289 ~~~~~~l~~~~~~-----iN~~~----~~~vv~~~~~~l~~-----------------------~~~~~~VavlGlafK~ 336 (473)
T PLN02353 289 LPEVAEYWKQVIK-----MNDYQ----KSRFVNRVVSSMFN-----------------------TVSGKKIAVLGFAFKK 336 (473)
T ss_pred CchHHHHHHHHHH-----HHHhh----HHHHHHHHHHHhhc-----------------------ccCCCEEEEEeeeecC
Confidence 88 555555542 22111 11234333332110 011258999998
Q ss_pred ------chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----------------------CCcccCCHHHHhccCcEE
Q 001973 155 ------GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----------------------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 155 ------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----------------------G~~~~~s~~e~~~~aDvV 206 (988)
..-...++..|.+.|.+|.+||.--...+.-... ++..++++.++++++|+|
T Consensus 337 ~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~v 416 (473)
T PLN02353 337 DTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGI 416 (473)
T ss_pred CCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEE
Confidence 4577899999999999999999763322110011 235577878899999999
Q ss_pred EEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 207 ~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
++++..+. .+..- .+.+.+.+.+..+|+|+.....
T Consensus 417 vi~t~~~e-f~~l~--~~~~~~~m~~~~~viD~rn~l~ 451 (473)
T PLN02353 417 CILTEWDE-FKTLD--YQKIYDNMQKPAFVFDGRNVLD 451 (473)
T ss_pred EECCCChH-hcccC--HHHHHHhccCCCEEEECCCCCC
Confidence 99999866 33221 0233444555568999887753
No 213
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.58 E-value=0.00051 Score=73.47 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=80.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCC---Ce-EEEEeCChhHHHHHHhcCCcccCCHHHH-hccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN---FT-VIGYDVYRPTLTKFQNVGGLIANSPAEA-AKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~-~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+||||||+|.||..++..|.+.+ ++ +.+|+|++++.+.+... ...++++.++ ....|+|+-|-+.. ++++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHH-HHHHHH-
Confidence 69999999999999999997643 44 56689999888888665 7788999996 68899999998754 355543
Q ss_pred cccchhhhCCCCCEEEecCCC---CHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 222 GDLGAVSALSSGASIILSSTV---SPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
.+.|..|.-++.+|.+ .+...+++.+...+.+..++...+.+.|
T Consensus 80 -----~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigG 126 (267)
T PRK13301 80 -----EGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAG 126 (267)
T ss_pred -----HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHh
Confidence 2345556666666643 4455666666555533344444444444
No 214
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.57 E-value=0.00033 Score=81.09 Aligned_cols=130 Identities=13% Similarity=0.079 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHH-H--h--hhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVW-E--N--VLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMG 158 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~-~--~--~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG 158 (988)
-+...+++.|+.|.+.|.-+.....+++.- . + ++...+......-.+..-...++. ...-..++|.|||+|.||
T Consensus 115 QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~-~~~l~~kkvlviGaG~~a 193 (414)
T PRK13940 115 QILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQ-LDNISSKNVLIIGAGQTG 193 (414)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHH-hcCccCCEEEEEcCcHHH
Confidence 478889999999999887765555554431 1 1 111111111111111111122211 112234689999999999
Q ss_pred HHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-C-Cc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 159 FGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-G-GL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 159 ~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G-~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
..++.+|+..|. ++++++|+.++.+.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 194 ~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 194 ELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred HHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 999999999995 799999999999888764 2 22 23556677889999999998765
No 215
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.55 E-value=0.00044 Score=78.71 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHH-------HHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKV-------WENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA 156 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~ 156 (988)
-+...+++.|..|.+.|.-+.....+++. ++..++..-...+.. +..-+.++..-. .-...++.|||+|.
T Consensus 112 QILGQVK~Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~--saAv~lA~~~~~-~L~~~~vlvIGAGe 188 (414)
T COG0373 112 QILGQVKDAYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSIS--SAAVELAKRIFG-SLKDKKVLVIGAGE 188 (414)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCCccchH--HHHHHHHHHHhc-ccccCeEEEEcccH
Confidence 47888999999999988766666555532 122222211111111 112223322211 11346899999999
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 157 MGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 157 mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
||.-.|++|.++| .+|++.||+.+++.+|.+. |+. ..+.+.+.+.++|+||+++..+.
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 9999999999999 6899999999999988764 533 34567778899999999987654
No 216
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.54 E-value=0.00034 Score=78.01 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=73.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc----CCcc-cCCHHHHhccCcEEEEEcCChHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV----GGLI-ANSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~----G~~~-~~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
...+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+.+.+. +..+ +++.+++++++|+|++|+|.+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 45699999999999999999975 45 4799999999998877653 3333 5788999999999999999865
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++ . ..+++|+.|...++..|+.-
T Consensus 201 Pl~---~---~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 201 PVY---P---EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred cee---C---ccCCCCCEEEecCCCCCCcc
Confidence 333 1 23678998888888777553
No 217
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.53 E-value=0.00049 Score=79.18 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
..+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|+... +..+++..+|+||.|+.++..+.. .
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~------~ 274 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITG------E 274 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHH------H
Confidence 469999999999999999999999999999999999988888887543 457888899999999987664443 2
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
....+++|.++++.+..
T Consensus 275 ~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 275 HFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHhcCCCCcEEEEeCCC
Confidence 34567889999988754
No 218
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0017 Score=66.62 Aligned_cols=189 Identities=13% Similarity=0.047 Sum_probs=123.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEE-eCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGY-DVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+.++|||.|..|.+...+..+.++..... .|+++++..|.+.-.-..-+.+...+-.+++|.-+|+.. +..+.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~-~s~va---- 84 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDAL-YSGVA---- 84 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHH-HHHHH----
Confidence 468999999999999666655555554433 578888777665422222233333445678888888762 33332
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-c---ccCCccccc--CCCeEEEEeCCHHHHHHHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-P---VSGGVKRAS--MGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-p---v~g~~~~a~--~g~l~~~~gg~~~~~~~~~~ll 298 (988)
......+|+++++||...-.. +-+.+.. .|...... | .+|.+.... .++...+..+|+--+.-++++.
T Consensus 85 -a~~~~rpg~iv~HcSga~~~~---il~~~gr--~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la 158 (289)
T COG5495 85 -ATSLNRPGTIVAHCSGANGSG---ILAPLGR--QGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLA 158 (289)
T ss_pred -HhcccCCCeEEEEccCCCchh---hhhhhhh--cCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHH
Confidence 123356899999999764332 3333333 22222211 2 233444433 4555555567776677788999
Q ss_pred HhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 001973 299 SALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNT 347 (988)
Q Consensus 299 ~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~ 347 (988)
..+|.+.+.+ ..+.--......|...+.....+.|+.++.+..|+|.
T Consensus 159 ~emgg~~f~V--~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 159 LEMGGEPFCV--REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred HHhCCCceee--chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 9999888876 7777777888888888888899999999999999883
No 219
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.49 E-value=0.00018 Score=84.14 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHhcC-CCccccccccccccCC-C-----CCCCc-
Q 001973 315 GSGVKMANQLLAGVHIASAAEAMAFGAR----L--GLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-D-----YTPYS- 380 (988)
Q Consensus 315 a~~~Kl~~N~~~~~~~~~~~Ea~~la~~----~--Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~-----~~~~~- 380 (988)
++.+|.++|.+.+.++..++|.+.+.++ . ++|..++.++.+.|. -.|++++.....+... + +.+.|
T Consensus 304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~ 383 (459)
T PRK09287 304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFK 383 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHH
Confidence 3577888898888999999999988776 4 478889998888765 4566555433322211 1 11111
Q ss_pred -hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 381 -ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 381 -~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.+......++.++..+-+.|+|+|.+.++...|+..... .-...+++..+...|..
T Consensus 384 ~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~----~~~anliqaqRd~FGaH 440 (459)
T PRK09287 384 DILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA----RLPANLIQAQRDYFGAH 440 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHHHhHhCCC
Confidence 233344555788999999999999999999766655433 22345888888777754
No 220
>PRK04148 hypothetical protein; Provisional
Probab=97.46 E-value=0.00086 Score=64.50 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=73.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----cCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----ANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
++|..||+| .|..+|..|++.|++|++.|.+++.++.+.+.+..+ .+-..+.-+++|+|..+=|.+.-...++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 589999999 999999999999999999999999999888876542 3334466789999999999888666665
Q ss_pred cccchhhhCCCCCEEEecCCCCH
Q 001973 222 GDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p 244 (988)
.+.......-+|..+|+-.|
T Consensus 96 ---~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 96 ---ELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred ---HHHHHcCCCEEEEcCCCCCC
Confidence 56666666666666666543
No 221
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.45 E-value=0.0007 Score=74.02 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=67.8
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeE-EEEeCC--hhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTV-IGYDVY--RPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V-~v~dr~--~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|||||||+|.||..+++.+.+. +.++ .+++++ .++.......+...+++++++..+.|+|+.|.|.... .+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~-- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV-- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH--
Confidence 6999999999999999999876 4553 344443 3333333333667788888874568999999998654 3332
Q ss_pred ccchhhhCCCCCEEEecCCC---CHHHHHHHHHHHHhc
Q 001973 223 DLGAVSALSSGASIILSSTV---SPGFVSQLERRLQFE 257 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~~~ 257 (988)
...+..|+-++..|+. .+....++.+...+.
T Consensus 79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~ 112 (265)
T PRK13303 79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAG 112 (265)
T ss_pred ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence 2334556555555553 455556666666553
No 222
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.44 E-value=0.00016 Score=82.25 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhc-----cCCchhhhccccccccCCCCcchHHHHHHhHH------------HHH
Q 001973 11 LIASVEAISLGVQFGIHPWVLYDIISNA-----AGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLG------------IAL 73 (988)
Q Consensus 11 ~~~~aEal~la~~~Gld~~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~------------la~ 73 (988)
..++.|++.++++.|++++.+.++..++ ...+++++.+.+.+.+.++.+ ...|.||+. +++
T Consensus 216 ~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Sm~~D~~~~r~tEi~~i~G~i~ 293 (341)
T PRK08229 216 ALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA--RSSMSDDLAAGRATEIDWINGEIV 293 (341)
T ss_pred HHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc--CchHHHHHHcCCcchHHHHhhHHH
Confidence 3789999999999999998887766665 456777777777777776654 235999999 799
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCC
Q 001973 74 DMAKTLAFPLPLLAVAHQQLILGLSHAHANDD 105 (988)
Q Consensus 74 ~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D 105 (988)
+.|++.|+++|..+.+.+.|+.+.+.|....-
T Consensus 294 ~~a~~~gv~~P~~~~~~~~~~~~~~~~~~~~~ 325 (341)
T PRK08229 294 RLAGRLGAPAPVNARLCALVHEAERAGARPAW 325 (341)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHhCCCcCCC
Confidence 99999999999999999999999888766544
No 223
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.43 E-value=0.00068 Score=79.07 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
...+|+|||+|.||..++..|...| .+|++|||+.++.+.+.+. |.. ..++..+.+.++|+||.|++.+.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 3469999999999999999999999 7899999999988766653 432 22456677889999999988765
No 224
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.38 E-value=0.00066 Score=80.46 Aligned_cols=102 Identities=11% Similarity=0.175 Sum_probs=72.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc--cCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI--ANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~--~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
++++|+|+|.+|.+++..|++.|++|+++||+.++.+.+.+. +... ..+..+ +.++|+||.|+|....+...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~~---- 407 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPKA---- 407 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchhH----
Confidence 589999999999999999999999999999999988877653 2111 122222 46899999999987533211
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
+. .+++|+...++.+. +.+...+ .|...++
T Consensus 408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~--~G~~~~~ 437 (477)
T PRK09310 408 ------FP--PCVVDINTLPKHSP--YTQYARS--QGSSIIY 437 (477)
T ss_pred ------Hh--hhEEeccCCCCCCH--HHHHHHH--CcCEEEC
Confidence 11 38999999877665 4455544 3444443
No 225
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.38 E-value=0.001 Score=74.35 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=51.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhcC-----Cc-ccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNVG-----GL-IANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~G-----~~-~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.+|.++|..|+.+| ++|.++|+++++.+. +.... .. .+++. +.+++||+||++++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 58999999999999999999999 689999999877653 33221 01 12344 5689999999999875
No 226
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.37 E-value=0.00055 Score=69.18 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=59.6
Q ss_pred CCeEEEEccchH-HHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAM-GFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..+|.|||.|.| |..++.+|.+.|.+|++.+|+. +++.+.+.++|+||.+++.+. ++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~--- 102 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVK--- 102 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eec---
Confidence 469999999997 9999999999999999999873 355677889999999999865 221
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...++++.++||.+.-
T Consensus 103 --~~~~~~~~viIDla~p 118 (168)
T cd01080 103 --GDMVKPGAVVIDVGIN 118 (168)
T ss_pred --HHHccCCeEEEEccCC
Confidence 1235668899998864
No 227
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.36 E-value=0.00069 Score=75.92 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=55.1
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHH----hc-----CCcccCCHHHHhccCcEEEEE
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQ----NV-----GGLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~-----G~~~~~s~~e~~~~aDvV~l~ 209 (988)
||++..+||+|||+|.+|..+|..|+..|. ++.++|++.++++... .. ......+.-+.+++||+|+++
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIit 80 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVIT 80 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEe
Confidence 566777899999999999999999999987 8999999887654322 21 122233444568999999998
Q ss_pred cCCh
Q 001973 210 VTNE 213 (988)
Q Consensus 210 vp~~ 213 (988)
...+
T Consensus 81 ag~~ 84 (315)
T PRK00066 81 AGAP 84 (315)
T ss_pred cCCC
Confidence 7643
No 228
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.36 E-value=0.00086 Score=78.36 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=53.4
Q ss_pred CeEEEEccchHHHHHHH--HH----HhCCCeEEEEeCChhHHHHHHhc--------C----CcccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMAT--HL----LRSNFTVIGYDVYRPTLTKFQNV--------G----GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~--------G----~~~~~s~~e~~~~aDvV~l 208 (988)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+..... + +..++|..+++++||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 48999999999998666 34 45678999999999887765431 1 2357788999999999999
Q ss_pred EcCCh
Q 001973 209 MVTNE 213 (988)
Q Consensus 209 ~vp~~ 213 (988)
+++..
T Consensus 81 ai~~~ 85 (423)
T cd05297 81 TIQVG 85 (423)
T ss_pred eeEec
Confidence 99853
No 229
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.35 E-value=0.00088 Score=72.92 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=68.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||+|+|+ |.||..++..+.+. ++++. ++|+++++.......++...+++.++++++|+|+.+.|.... .++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~-~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEAT-LENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHH-HHHH---
Confidence 69999998 99999999998864 57754 589988766544334566778999988889999988765443 3333
Q ss_pred cchhhhCCCCC-EEEecCCCCHHHHHHHHH
Q 001973 224 LGAVSALSSGA-SIILSSTVSPGFVSQLER 252 (988)
Q Consensus 224 ~~i~~~l~~g~-ivId~st~~p~~~~~l~~ 252 (988)
...+..|. +++-.+..++....++.+
T Consensus 78 ---~~al~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 78 ---EFALEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 22233454 444433446666666665
No 230
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.30 E-value=0.00099 Score=74.51 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=74.7
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----cCCc--ccCCHHHHhccCcEEEEEcCChHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN----VGGL--IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~----~G~~--~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
....+++|||+|..+...+..+... -.+|++|||++++.+.+.+ .+.. .+++.++++++||+|++|+++..
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~- 204 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE- 204 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC-
Confidence 3457899999999999999988763 2579999999999887654 2433 47899999999999999998754
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++. ...+++|+.|...++..|+..
T Consensus 205 --P~~~-----~~~l~~G~hi~~iGs~~p~~~ 229 (315)
T PRK06823 205 --PLLQ-----AEDIQPGTHITAVGADSPGKQ 229 (315)
T ss_pred --ceeC-----HHHcCCCcEEEecCCCCcccc
Confidence 3331 245779999888888777553
No 231
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.29 E-value=0.00036 Score=66.71 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=58.8
Q ss_pred eEEEEc-cchHHHHHHHHHHhCCC-e-EEEEeCChhHHHHHHhc--------CCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 148 RVGFIG-LGAMGFGMATHLLRSNF-T-VIGYDVYRPTLTKFQNV--------GGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
||+||| .|++|..+.+.|.++-+ + +.++.++.+.-+.+... ...+.+...+.+.++|+||+|+|+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 799999 99999999999998643 4 56667766333333322 1223333345568999999999986643
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
+ .. . ..+.+|..|||.|+..
T Consensus 81 ~-~~---~---~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 81 E-LA---P---KLLKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HH---H---HHHHTTSEEEESSSTT
T ss_pred H-HH---H---HHhhCCcEEEeCCHHH
Confidence 3 32 1 2245788999999853
No 232
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.29 E-value=0.00086 Score=74.60 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=73.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhc-----C--CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-N-FTVIGYDVYRPTLTKFQNV-----G--GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----G--~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
...+++|||+|..|...+..+... . .+|.+|||++++.+++.+. | +..++++++++.+||+|++|+++..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~- 194 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT- 194 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-
Confidence 456899999999999999988864 2 4799999999998876543 4 3457899999999999999999754
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++. ..++++|..|.-..+..|+..
T Consensus 195 --P~~~-----~~~l~pg~hV~aiGs~~p~~~ 219 (301)
T PRK06407 195 --PIFN-----RKYLGDEYHVNLAGSNYPNRR 219 (301)
T ss_pred --cEec-----HHHcCCCceEEecCCCCCCcc
Confidence 3331 235678877777777766543
No 233
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.29 E-value=0.00044 Score=79.27 Aligned_cols=95 Identities=23% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc---c---CCHHHHhccCcEEEEEcCChHH-HH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI---A---NSPAEAAKDVGVLVIMVTNEAQ-AE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~---~---~s~~e~~~~aDvV~l~vp~~~~-~~ 217 (988)
..+|.|||+|.+|...+..+...|.+|+++|+++++.+.+... +..+ . .++.+.+.++|+||.|++.+.. ..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCC
Confidence 3579999999999999999999999999999999988877654 3211 1 2356677899999999843211 11
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++. ++....++++.+|||.+..
T Consensus 247 ~lit--~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 247 KLVS--NSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred cCcC--HHHHhcCCCCCEEEEEecC
Confidence 1111 3344567889999998843
No 234
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0011 Score=71.76 Aligned_cols=106 Identities=23% Similarity=0.282 Sum_probs=87.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
+++||+|+|.+|+.+|.++...|..|+.||.-.- .+++.+.|+.. .+.+|++..||+|-+-+|-..+++.++. +.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin--~~t 222 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLN--DET 222 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccC--HHH
Confidence 5899999999999999999999999998975322 23455567765 4789999999999999999888888885 445
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
...+++|..||+++-+..-....+-+.+..
T Consensus 223 fA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 223 FAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred HHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 677899999999998888777777777765
No 235
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.27 E-value=0.0011 Score=74.90 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=68.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc-----CCc--ccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV-----GGL--IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----G~~--~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
...+++|||+|.+|...+..|.. .+ .+|++|||++++.+.+.+. |.. ..++++++++++|+|+.|+|...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 34689999999999999999974 56 4699999999998887653 443 36789999999999999998744
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++. ...+++|..+...+.-
T Consensus 207 --p~i~-----~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 --PILH-----AEWLEPGQHVTAMGSD 226 (326)
T ss_pred --cEec-----HHHcCCCcEEEeeCCC
Confidence 2221 2346677776655443
No 236
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.27 E-value=0.00082 Score=66.05 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=51.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHh----c------CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQN----V------GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~----~------G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.... . .........+.+++||+|+++...+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 59999999 9999999999998874 79999999876544321 1 1233446667788999999998553
No 237
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.26 E-value=0.001 Score=74.46 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=52.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc--------C--CcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV--------G--GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~--------G--~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+||+|||+|.+|.++|..|+..| ++|.++|+++++.+.+... + ........+.+++||+||++...+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 38999999999999999999999 6899999999887654431 1 122223334578999999999765
No 238
>PRK06046 alanine dehydrogenase; Validated
Probab=97.25 E-value=0.00089 Score=75.55 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=72.0
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhc-----C--CcccCCHHHHhccCcEEEEEcCChH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS-N-FTVIGYDVYRPTLTKFQNV-----G--GLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----G--~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
....+|+|||+|.+|...+..|... + ..|.+|||++++.+++.+. + ....++.+++++ +|+|++|+|+..
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence 3456899999999999999999853 3 4699999999998876653 4 235778899887 999999999853
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.++. ..++++|+.|...++..|..
T Consensus 206 ---P~~~-----~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 206 ---PVVK-----AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred ---cEec-----HHHcCCCCEEEecCCCCCcc
Confidence 3331 24567888888777776654
No 239
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.23 E-value=0.0017 Score=72.99 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=49.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHH--H--Hh----cC----CcccCCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTK--F--QN----VG----GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l--~~----~G----~~~~~s~~e~~~~aDvV~l~v 210 (988)
+.+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .. .+ +..+++. +++++||+||++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 34799999999999999999999995 89999999885421 1 11 11 2223565 5779999999977
No 240
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.22 E-value=0.0014 Score=73.97 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=73.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc-----CC--cccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV-----GG--LIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----G~--~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
...+++|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+. +. ...++.++++.++|+|++|+|...
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~- 204 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT- 204 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC-
Confidence 44689999999999999888764 34 4799999999999887652 43 346888999999999999999764
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++ . ..+++|+.|+...+..|+..
T Consensus 205 --p~i----~--~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 205 --PVF----S--EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred --cch----H--HhcCCCcEEEecCCCCcccc
Confidence 233 1 45788999988888777554
No 241
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0019 Score=68.83 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=53.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh--cCCcc----cC---CHHHH-hccCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN--VGGLI----AN---SPAEA-AKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--~G~~~----~~---s~~e~-~~~aDvV~l~vp~~~ 214 (988)
|+|.|||+|.+|..+|+.|.+.||+|++.|++++++++... ..... .+ .+.++ +.++|+++.++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 58999999999999999999999999999999999988544 33221 11 23333 568899999998765
No 242
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.019 Score=64.33 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcCC
Q 001973 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLAF 81 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g~ 81 (988)
.+|.++++=+.=+-|--.++++.|+|..++.+.+..- .+.+++.++..|- |.=.=+=||++-.+..|++.|.
T Consensus 208 aaNafLAtKIsFiNEia~ice~~g~D~~~V~~gIGlD-------~RIG~~fl~aG~G-yGGsCfPKD~~AL~~~a~~~~~ 279 (414)
T COG1004 208 AANAFLATKISFINEIANICEKVGADVKQVAEGIGLD-------PRIGNHFLNAGFG-YGGSCFPKDTKALIANAEELGY 279 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC-------chhhHhhCCCCCC-CCCcCCcHhHHHHHHHHHhcCC
Confidence 5799999999999999999999999999999988422 1122222322211 1122234999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc------
Q 001973 82 PLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG------ 155 (988)
Q Consensus 82 ~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G------ 155 (988)
+.++.+++.+.=+.-.. .+.+.+.+..+ + .-++|||.|+-
T Consensus 280 ~~~ll~avv~vN~~qk~---------~~~~~i~~~~~--l-----------------------~Gk~iavlgLafKpnTD 325 (414)
T COG1004 280 DPNLLEAVVEVNERRKD---------KLAEKILNHLG--L-----------------------KGKTIAVLGLAFKPNTD 325 (414)
T ss_pred chHHHHHHHHHHHHHHH---------HHHHHHHHhcC--C-----------------------CCcEEEEEEEeecCCCc
Confidence 98888777654332221 13333333222 0 01245555542
Q ss_pred ----hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCC
Q 001973 156 ----AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALS 231 (988)
Q Consensus 156 ----~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~ 231 (988)
.--..++..|.+.|.+|.+||+-...-....-.+...++++.++++.||+++++..+.+ ++++-+ +.+ +-
T Consensus 326 D~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~e-f~~~d~--~~~---~m 399 (414)
T COG1004 326 DMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWDE-FRDLDF--EKL---LM 399 (414)
T ss_pred cchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHHH-HhccCh--hhh---hc
Confidence 23456788899999999999965433222222246889999999999999999987654 554421 111 44
Q ss_pred CCCEEEec
Q 001973 232 SGASIILS 239 (988)
Q Consensus 232 ~g~ivId~ 239 (988)
++.+|+|.
T Consensus 400 ~~~~v~Dg 407 (414)
T COG1004 400 KTPVVIDG 407 (414)
T ss_pred cCCEEEec
Confidence 66777774
No 243
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.16 E-value=0.0017 Score=71.63 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=68.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcC-----CcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVG-----GLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G-----~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
.++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.+.- +....+..+.+.++|+||.|+|....-..-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~ 203 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPL 203 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCC
Confidence 48999999999999999999999 78999999999988876531 1111133456688999999998754210000
Q ss_pred ccccchhhhCCCCCEEEecCCCCHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~ 245 (988)
..-....++++.+++|..-.+..
T Consensus 204 --~~~~~~~l~~~~~v~DivY~P~~ 226 (278)
T PRK00258 204 --PPLPLSLLRPGTIVYDMIYGPLP 226 (278)
T ss_pred --CCCCHHHcCCCCEEEEeecCCCC
Confidence 00112346778999999875433
No 244
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.16 E-value=0.0024 Score=70.11 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=66.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCe-EEEEeCChhHH--HHHHhcCCcc-cCCHHHHhc-----cCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFT-VIGYDVYRPTL--TKFQNVGGLI-ANSPAEAAK-----DVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~-V~v~dr~~~~~--~~l~~~G~~~-~~s~~e~~~-----~aDvV~l~vp~~~ 214 (988)
+++||||||+|++|+.+...+.+. +.+ +.++|++++.. +...+.|+.. .++.+++++ +.|+||.++|...
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~ 82 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA 82 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH
Confidence 457999999999999988888764 456 44679988642 4445568765 477888874 5889999999866
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
..+... .....|+.+||.+...
T Consensus 83 H~e~a~-------~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 83 HVRHAA-------KLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHHHH-------HHHHcCCeEEECCccc
Confidence 444332 2345788999988653
No 245
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.14 E-value=0.0039 Score=70.85 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=76.9
Q ss_pred CCCeEEEEccchH-HHHHHHHHHhCCC---eEEEEeCChhHHHHHHhc-CC-cccCCHHHHhcc--CcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAM-GFGMATHLLRSNF---TVIGYDVYRPTLTKFQNV-GG-LIANSPAEAAKD--VGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~m-G~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~~--aDvV~l~vp~~~~~ 216 (988)
+++||||||+|.+ +...+..+.+.+. -|.++|+++++++.+.+. |+ ...+|++++++. .|+|++|+|+....
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 3479999999954 4668888888763 377789999999887764 65 378899999875 59999999998866
Q ss_pred HHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 217 ESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+.++ ..+..|+ +++.. =+..+..++++.+...+
T Consensus 82 e~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 82 ELAL-------AALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred HHHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 6554 2344454 44443 25567788888777665
No 246
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.11 E-value=0.0026 Score=71.45 Aligned_cols=64 Identities=30% Similarity=0.399 Sum_probs=49.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHH----HHhc----C----CcccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTK----FQNV----G----GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~----l~~~----G----~~~~~s~~e~~~~aDvV~l~v 210 (988)
.+||+|||+|.||..++..++..| .+|.+||+++++.+. +... + ++.+++++ ++++||+|+++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 469999999999999999999999 689999999865432 1111 1 12235555 779999999999
No 247
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0022 Score=71.45 Aligned_cols=113 Identities=21% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----cC---CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN----VG---GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~----~G---~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
....++|||+|.++......+.+- .-+|.+|+|+++..+++.. .+ +..++|.++++++||+|+.|+|+..
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~- 207 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE- 207 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence 346899999999999999999863 3579999999999988763 33 4678999999999999999999866
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.++. ...+++|.-|.-.++..|+..+--.+.+.. .+.-++|.+
T Consensus 208 --Pil~-----~~~l~~G~hI~aiGad~p~k~Eld~e~l~r--a~~vvvD~~ 250 (330)
T COG2423 208 --PVLK-----AEWLKPGTHINAIGADAPGKRELDPEVLAR--ADRVVVDSL 250 (330)
T ss_pred --Ceec-----HhhcCCCcEEEecCCCCcccccCCHHHHHh--cCeEEEcCH
Confidence 3331 345778888887777666554433344433 224455543
No 248
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.08 E-value=0.0043 Score=67.84 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=66.3
Q ss_pred CeEEEEc-cchHHHHHHHHHHh-CCCeE-EEEeCC-hhHH----HHHH---hcCCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLR-SNFTV-IGYDVY-RPTL----TKFQ---NVGGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~-~G~~V-~v~dr~-~~~~----~~l~---~~G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
+||+|+| +|.||..+++.+.+ .++++ .++||+ ++.. ..+. ..|+.++++++++...+|+|+.+.+...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~- 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG- 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence 6999999 69999999999986 46774 447854 3221 1221 1256667888887557899999997655
Q ss_pred HHHHHccccchhhhCCCC-CEEEecCCCCHHHHHHHHHHHHh
Q 001973 216 AESVLYGDLGAVSALSSG-ASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g-~ivId~st~~p~~~~~l~~~l~~ 256 (988)
..+.+ ...+..| .+|+-++...+...+++.+...+
T Consensus 81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~ 116 (266)
T TIGR00036 81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEK 116 (266)
T ss_pred HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 33333 2233445 45555555666666666665443
No 249
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.06 E-value=0.0016 Score=72.61 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhc----C----CcccCCHHHHhccCcEEEEEcCC
Q 001973 149 VGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTK----FQNV----G----GLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~----l~~~----G----~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+. +.+. + +..+++. +.+++||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC
Confidence 6899999999999999998887 99999999875432 1211 1 1223454 558999999998854
No 250
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.05 E-value=0.00081 Score=75.34 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc----CC--cccCCHHHHhccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV----GG--LIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~----G~--~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
...+++|||+|..+...+..|.. .+ .+|.+|+|++++.+++.+. +. ..++|+++++++||+|++|+|.....
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA 206 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence 44689999999999999998876 33 4799999999998877653 33 45889999999999999999875410
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.++. ...+++|..|...++..|+.
T Consensus 207 -P~~~-----~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 207 -PVFD-----AEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp -ESB------GGGS-TT-EEEE-S-SSTTB
T ss_pred -cccc-----HHHcCCCcEEEEecCCCCch
Confidence 2221 24578898888888776643
No 251
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.04 E-value=0.0025 Score=56.87 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=50.3
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
++++|+|.|.+|..++..|.+. +.+|++||| |++|.|++.+..+.+ .
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~------~ 71 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE------E 71 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH------H
Confidence 5899999999999999999998 678999998 999999987654332 1
Q ss_pred hhhhCCCCCEEEecC
Q 001973 226 AVSALSSGASIILSS 240 (988)
Q Consensus 226 i~~~l~~g~ivId~s 240 (988)
....+.++.+|+|++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 234567788998864
No 252
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.00 E-value=0.024 Score=59.92 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=80.2
Q ss_pred cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec--
Q 001973 188 VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-- 265 (988)
Q Consensus 188 ~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-- 265 (988)
.|+++++|..|+++++|++++-+|-....-.++ +.+.+++++|.+|.+.+|++|...-.+-+.+.+ +++...+
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R--~DvgIsS~H 201 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGR--DDLNVTSYH 201 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCc--ccCCeeccC
Confidence 488899999999999999999999877545555 678899999999999999998776655555543 2332222
Q ss_pred -CcccCCcccccCCCeEEEEe-CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 266 -APVSGGVKRASMGELTIMAA-GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 266 -apv~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
+.|-+.+ |+..+--+ .+++..+++.++.+..++..|.+
T Consensus 202 PaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 202 PGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 1222222 33222111 37889999999999999998876
No 253
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.00 E-value=0.031 Score=59.25 Aligned_cols=114 Identities=15% Similarity=0.254 Sum_probs=82.0
Q ss_pred cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 188 VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 188 ~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.|+++++|..|+++++|++++-+|-....-.++ +.+.+++++|.+|.+.+|++|...-.+-+.+.+ .++...+-
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R--~DvgVsS~- 198 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGR--EDLNVTSY- 198 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCc--ccCCeecc-
Confidence 488899999999999999999999877545555 678899999999999999998766555555543 33333222
Q ss_pred ccCCcccccCCCeEEEEe-CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 268 VSGGVKRASMGELTIMAA-GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 268 v~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
.-++.+... ++..+.-| .+++..+++.++.+..++..|.+
T Consensus 199 HPaaVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 199 HPGCVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 112222222 44344333 47889999999999999988876
No 254
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.98 E-value=0.002 Score=72.71 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=71.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----cC--CcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN----VG--GLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~----~G--~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
...+++|||+|..+......+..- -.+|++|+|++++.+.+.+ .+ +..+++++++++++|+|++|+++.. .
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~ 206 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-N 206 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-C
Confidence 346899999999999888777653 2579999999999887653 23 3457899999999999999997532 1
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
..++. .+.+++|+.|.-..+..|...
T Consensus 207 ~Pvl~-----~~~lkpG~hV~aIGs~~p~~~ 232 (346)
T PRK07589 207 ATILT-----DDMVEPGMHINAVGGDCPGKT 232 (346)
T ss_pred Cceec-----HHHcCCCcEEEecCCCCCCcc
Confidence 12221 235678887777777666543
No 255
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.97 E-value=0.0023 Score=72.45 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=57.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc-----CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV-----GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
..++|+|||+|.+|...+..|.. .+ .+|++|+|++++.+.+.+. |+. ..+++++++.++|+|+.|+|...
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence 34689999999999999998885 44 5799999999999888652 443 36788999999999999998743
No 256
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.97 E-value=0.0021 Score=66.86 Aligned_cols=92 Identities=18% Similarity=0.058 Sum_probs=65.2
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCc--c--cCC---HHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGL--I--ANS---PAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~--~--~~s---~~e~~~~aDvV~l~vp~~ 213 (988)
+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+. +.. . ..+ ..++++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 58999995 9999999999999999999999999988776542 211 1 122 346778999999999876
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
.... . .......++.+++|..-..+
T Consensus 109 ~~~~--~----~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 109 VELL--E----KLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred ceec--h----hhhcccCceeEEEEccCCCC
Confidence 6311 1 11112344778998866543
No 257
>PRK11579 putative oxidoreductase; Provisional
Probab=96.97 E-value=0.0084 Score=68.44 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCeEEEEccchHHHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFG-MATHLLRS-NFTVI-GYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
++||||||+|.||.. .+..+.+. +.++. ++|+++++... ...+....+|++++++ +.|+|++|+|+....+.+.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 479999999999984 56666654 57754 68999877542 1124567789999986 5799999999987666554
Q ss_pred ccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 221 YGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 221 ~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
..+..| +++++.- +.....++++.+...+
T Consensus 83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 223344 4555532 4556777787776655
No 258
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.90 E-value=0.0024 Score=73.26 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC--C-CeEEEEeCChhHHHHHHhc------C---CcccCCHHHHhccCcEEEEEcC
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS--N-FTVIGYDVYRPTLTKFQNV------G---GLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~l~~~------G---~~~~~s~~e~~~~aDvV~l~vp 211 (988)
....+++|||+|.++......++.- . -+|++|||++++.+.+.+. | +..++|+++++++||+|++|++
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence 3456899999999999999999873 2 4799999999998776532 2 4457999999999999999997
Q ss_pred ChHH---HHHHHccccchhhhCCCCCEEE
Q 001973 212 NEAQ---AESVLYGDLGAVSALSSGASII 237 (988)
Q Consensus 212 ~~~~---~~~vl~~~~~i~~~l~~g~ivI 237 (988)
+... ...++. ..++++|..|+
T Consensus 233 s~~~~~s~~Pv~~-----~~~lkpG~hv~ 256 (379)
T PRK06199 233 GETGDPSTYPYVK-----REWVKPGAFLL 256 (379)
T ss_pred CCCCCCCcCcEec-----HHHcCCCcEEe
Confidence 5331 112221 23567787665
No 259
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.90 E-value=0.0028 Score=69.96 Aligned_cols=165 Identities=19% Similarity=0.102 Sum_probs=101.7
Q ss_pred cCCCCcchHHH---HHHhHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhh--------------Cc--CC-CCCchh
Q 001973 54 RGDAKLHFLNA---FIQNLGIALDMAKTL-----AFPLPLLAVAHQQLILGLS--------------HA--HA-NDDNPP 108 (988)
Q Consensus 54 ~~~~~~f~l~l---~~KDl~la~~~a~~~-----g~~~p~~~~~~~~~~~a~~--------------~G--~g-~~D~~~ 108 (988)
+..|.+|.++. --.|+.-+++..+.. .+.+|.-+.+.++.+...+ .| .| +-|+..
T Consensus 34 ~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D~~~~~A~~iGAvNTv~~~~g~l~G~NTD~~G 113 (284)
T PRK12549 34 RYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLDELSDDARALGAVNTVVFRDGRRIGHNTDWSG 113 (284)
T ss_pred CeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCCceEEEecCCEEEEEcCCHHH
Confidence 34455554321 135666666655443 4567877777776664332 11 11 456666
Q ss_pred HHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh
Q 001973 109 LVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~ 187 (988)
+++.+++.. . ....++|.|||+|.+|.+++..|++.|. +|+++||+.++++.+.+
T Consensus 114 ~~~~l~~~~-~-----------------------~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 114 FAESFRRGL-P-----------------------DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred HHHHHHhhc-c-----------------------CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 666554210 0 0012489999999999999999999997 79999999999988765
Q ss_pred c-----C-Cc--ccCCHHHHhccCcEEEEEcCChHHHHHHHccccch-hhhCCCCCEEEecCCCCHHH
Q 001973 188 V-----G-GL--IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA-VSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 188 ~-----G-~~--~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i-~~~l~~g~ivId~st~~p~~ 246 (988)
. . .. ..++..+.+.++|+||.|+|....-..- ..+ ...+.++.+++|..-..+.|
T Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~----~~~~~~~l~~~~~v~DivY~P~~T 233 (284)
T PRK12549 170 ELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPG----LPLPAELLRPGLWVADIVYFPLET 233 (284)
T ss_pred HHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCC----CCCCHHHcCCCcEEEEeeeCCCCC
Confidence 2 1 11 1234455678899999998854210000 001 13466788999988765443
No 260
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.86 E-value=0.003 Score=71.74 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=57.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEEE-EeCChhHHHHHHhc-----CC--cccCCHH-HHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVIG-YDVYRPTLTKFQNV-----GG--LIANSPA-EAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~-----G~--~~~~s~~-e~~~~aDvV~l~vp~~~~ 215 (988)
+||+|||+ |.+|..+++.|.++ ++++.. .++ .+..+.+.+. +. ...++.. ....++|+||+|+|+...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 69999996 99999999999987 567655 553 3222222211 11 0122222 245689999999999765
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
.+.+. . .+..|..|||.|+..
T Consensus 82 ~~~v~----~---a~~aG~~VID~S~~f 102 (343)
T PRK00436 82 MDLAP----Q---LLEAGVKVIDLSADF 102 (343)
T ss_pred HHHHH----H---HHhCCCEEEECCccc
Confidence 44433 2 234689999999754
No 261
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.84 E-value=0.012 Score=74.83 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=73.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-Ce-------------EEEEeCChhHHHHHHhc--CC---cc-cCCHHHHh---cc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FT-------------VIGYDVYRPTLTKFQNV--GG---LI-ANSPAEAA---KD 202 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~--G~---~~-~~s~~e~~---~~ 202 (988)
++||+|||+|.||...+..|++.. .+ |++.|++++.++++.+. ++ .. .++.+++. ++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 569999999999999999998753 33 99999999998887663 32 22 45555544 67
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+|+|++|+|.......+ ...+..|+-+++.|. .....+++.+...+
T Consensus 649 ~DaVIsalP~~~H~~VA-------kaAieaGkHvv~eky-~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 649 VDVVISLLPASCHAVVA-------KACIELKKHLVTASY-VSEEMSALDSKAKE 694 (1042)
T ss_pred CCEEEECCCchhhHHHH-------HHHHHcCCCEEECcC-CHHHHHHHHHHHHH
Confidence 99999999986643322 223445666777774 45556667666655
No 262
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.82 E-value=0.016 Score=65.51 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=75.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC--Ce-EEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCCh----HHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN--FT-VIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNE----AQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G--~~-V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~----~~~~ 217 (988)
..||||||+ .||...+..+.+.. ++ |-++|+++++.+++.+. |+...+|.++++++.|++++++|+. ...+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e 81 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSA 81 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHH
Confidence 369999999 68999999998754 66 55689999999888764 7778899999999899999998752 2222
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+ ...+..|+-|+.---.....++++.+...+
T Consensus 82 ~a-------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 82 LA-------RALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred HH-------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 22 223445655554444457788888777665
No 263
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.81 E-value=0.0031 Score=70.53 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCCh--hHHHH----HHh----cC----CcccCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYR--PTLTK----FQN----VG----GLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~~----l~~----~G----~~~~~s~~e~~~~aDvV~l~ 209 (988)
|||+|||+ |.+|..++..|+..|+ +|+++|+++ ++++. +.+ .+ +...++. +.+++||+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 59999998 9999999999999997 499999954 33321 111 12 1223454 458999999999
Q ss_pred cCCh
Q 001973 210 VTNE 213 (988)
Q Consensus 210 vp~~ 213 (988)
+..+
T Consensus 80 ag~p 83 (309)
T cd05294 80 AGVP 83 (309)
T ss_pred cCCC
Confidence 9743
No 264
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.81 E-value=0.0083 Score=67.10 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=49.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
.+||+|||+|.+|..+|..|+..|. ++.+||++.++++. +... .+..+.++++ +++||+|+++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 4699999999999999999998884 79999998865533 2221 1222356665 7999999997654
No 265
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.79 E-value=0.0037 Score=71.10 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=60.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-----C---Cccc-CCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-----G---GLIA-NSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-----G---~~~~-~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|||+|||+ |.+|..+.+.|.++ ++++. +++.+.+.-+.+.+. + ..+. .+..+..+++|++|+|+|+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 48999998 99999999999987 56777 556554322222211 1 1111 145566568999999999976
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
..+-+. .+ ...|..|||.|+..
T Consensus 81 s~~~~~----~~---~~~G~~VIDlS~~f 102 (346)
T TIGR01850 81 SAELAP----EL---LAAGVKVIDLSADF 102 (346)
T ss_pred HHHHHH----HH---HhCCCEEEeCChhh
Confidence 443332 22 34689999999753
No 266
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.77 E-value=0.0062 Score=66.74 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHH--HHHHhcCCcc-cCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTL--TKFQNVGGLI-ANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~--~~l~~~G~~~-~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
+||||||+|.||..++..+.+. +.++. ++|+++++. +...+.|... .++.+++++ +.|+||+|+|+....+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 5899999999999998877754 56644 578888753 3444567654 457788775 578999999998755544
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
. ..+..|+.++|.+..
T Consensus 82 ~-------~al~aGk~VIdekPa 97 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPA 97 (285)
T ss_pred H-------HHHHcCCEEEECCcc
Confidence 3 335578888887754
No 267
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.76 E-value=0.0028 Score=74.64 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccccccccCC-CC-----CCCc-
Q 001973 315 GSGVKMANQLLAGVHIASAAEAMAFGAR------LGLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-DY-----TPYS- 380 (988)
Q Consensus 315 a~~~Kl~~N~~~~~~~~~~~Ea~~la~~------~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~-----~~~~- 380 (988)
++.+|.+.|.+...++..++|.+.+.++ .++|..++.++.+.|. -.|++++...+.+... +. .+.|
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 391 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 3577888888888899999999988776 6789999999988774 4566655443332221 11 1111
Q ss_pred -hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 381 -ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 381 -~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.+......++.++..+-+.|+|+|.+.++...|...... .--..+++..+...|..
T Consensus 392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~----~~~~nliqaqRd~FGaH 448 (467)
T TIGR00873 392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA----RLPANLLQAQRDYFGAH 448 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----cccHHHHHHHHHHhccc
Confidence 234445556888999999999999999999888876652 22355888888777743
No 268
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.73 E-value=0.0054 Score=72.68 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=55.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-cCCcc-------cCCHHHH-hccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-VGGLI-------ANSPAEA-AKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~G~~~-------~~s~~e~-~~~aDvV~l~vp~~~~ 215 (988)
|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+ .|... ...+.++ +.++|.++++++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 58999999999999999999999999999999999998876 44322 1123334 5689999999987653
No 269
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.69 E-value=0.017 Score=54.42 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=55.8
Q ss_pred EEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHHH----HhccCcEEEEEcCChHHHHHHH
Q 001973 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPAE----AAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~e----~~~~aDvV~l~vp~~~~~~~vl 220 (988)
|-|+|.|.+|..++..|.+.+.+|++.|++++..+.+.+.|..+ .++..- -+++++.++++.+++..-..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 56899999999999999997779999999999999999988643 122221 2468899999999876444443
No 270
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.0059 Score=66.68 Aligned_cols=74 Identities=23% Similarity=0.195 Sum_probs=61.2
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||.|. +|.++|..|...|.+|++++++. .++.+.+++||+||.+++.+.-+.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~------- 216 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVT------- 216 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccC-------
Confidence 47999999988 99999999999999999998742 356778899999999999876221
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 217 --~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 217 --KDVVKEGAVIIDVGNT 232 (286)
T ss_pred --HHHcCCCcEEEEcCCC
Confidence 1346789999998875
No 271
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.65 E-value=0.0081 Score=68.08 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=29.9
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEEE-EeCChhHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVIG-YDVYRPTLTKF 185 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l 185 (988)
+||||+|+|.||..+++.+.+. +++|.+ +|++++....+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~l 42 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARV 42 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHH
Confidence 6999999999999999998864 467554 56676555543
No 272
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.63 E-value=0.0066 Score=67.69 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=50.5
Q ss_pred EEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc--------C-Ccc--cCCHHHHhccCcEEEEEcCChH
Q 001973 149 VGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV--------G-GLI--ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~--------G-~~~--~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|+|||+|.+|+++|..|+..| ++++++|+++++++..... . .+. +++ .+.+++||+||++...+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 689999999999999999998 6899999998876654431 0 111 344 467899999999998643
No 273
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.62 E-value=0.0067 Score=66.37 Aligned_cols=62 Identities=27% Similarity=0.418 Sum_probs=49.8
Q ss_pred EEEEcc-chHHHHHHHHHHhCC----CeEEEEeCChhHHHHHHh-----------cCCcccCCHHHHhccCcEEEEEc
Q 001973 149 VGFIGL-GAMGFGMATHLLRSN----FTVIGYDVYRPTLTKFQN-----------VGGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 149 IgiIG~-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~-----------~G~~~~~s~~e~~~~aDvV~l~v 210 (988)
|+|||+ |.||..++..|+..| .+|.+||+++++.+.... ..++.++++.+++++||+|+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999998 799999999876544222 12234567788999999999965
No 274
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.61 E-value=0.0071 Score=71.30 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=70.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-cCC--------------------------HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-ANS--------------------------PAEA 199 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-~~s--------------------------~~e~ 199 (988)
.|+.|+|+|.+|...+..+...|..|+++|+++++.+.+...|... .-+ ..+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999988888777653 001 3345
Q ss_pred hccCcEEEEEc-----CChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 200 AKDVGVLVIMV-----TNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 200 ~~~aDvV~l~v-----p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
++++|+||.|+ |.|.- +. ++..+.+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP~L----it--~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAPKL----IT--EEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCCee----eh--HHHHhhCCCCCEEEEeeeC
Confidence 67899999998 44421 11 3446678899999998873
No 275
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.57 E-value=0.004 Score=63.20 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=66.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC--------------------------CHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN--------------------------SPAEA 199 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~--------------------------s~~e~ 199 (988)
..+|.|+|.|..|..-+..|...|++|+++|.++++.+.+...+..... ...+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 4699999999999999999999999999999999988887776543211 23456
Q ss_pred hccCcEEEEEcC--ChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 200 AKDVGVLVIMVT--NEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 200 ~~~aDvV~l~vp--~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
+..+|+|+.+.- .... -.++. ++..+.++++.+|+|.|-
T Consensus 100 i~~~d~vI~~~~~~~~~~-P~lvt--~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRA-PRLVT--EEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHH-SEEEEHHHBTTSS----SBE--HHHHHTSSTTEEEEETTG
T ss_pred HhhCcEEeeecccCCCCC-CEEEE--hHHhhccCCCceEEEEEe
Confidence 788999997543 3222 22221 445667889999999974
No 276
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.57 E-value=0.0098 Score=59.47 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=71.6
Q ss_pred HHHHhcCCCCcHHHHHHHHH---HHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEE
Q 001973 74 DMAKTLAFPLPLLAVAHQQL---ILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVG 150 (988)
Q Consensus 74 ~~a~~~g~~~p~~~~~~~~~---~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIg 150 (988)
++++..|+.. ++.++-| -+.-..|+| .|...+.+.+.+..|.+ ++.++.
T Consensus 37 els~~~~vds---atIRrDfSYFG~lGkrG~G-YnV~~L~~ff~~~Lg~~------------------------~~tnvi 88 (211)
T COG2344 37 ELSEALGVDS---ATIRRDFSYFGELGKRGYG-YNVKYLRDFFDDLLGQD------------------------KTTNVI 88 (211)
T ss_pred HHHHHhCCCH---HHHhhhhHHHHhcCCCCCC-ccHHHHHHHHHHHhCCC------------------------cceeEE
Confidence 4666667663 4444433 344455555 56666777766655532 224899
Q ss_pred EEccchHHHHHHHHH-H-hCCCe-EEEEeCChhHHHHHHhcCCc--ccCCHHHHhc--cCcEEEEEcCChH
Q 001973 151 FIGLGAMGFGMATHL-L-RSNFT-VIGYDVYRPTLTKFQNVGGL--IANSPAEAAK--DVGVLVIMVTNEA 214 (988)
Q Consensus 151 iIG~G~mG~~lA~~L-~-~~G~~-V~v~dr~~~~~~~l~~~G~~--~~~s~~e~~~--~aDvV~l~vp~~~ 214 (988)
+||+|++|.+++..- . ++|++ +.+||.+++.+-.-.. ++. -.++++..++ +.|+.++|||...
T Consensus 89 iVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~-~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 89 IVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG-DVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred EEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC-CeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 999999999999753 3 56776 6778999987643221 222 2445666665 6788888888654
No 277
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.54 E-value=0.018 Score=70.61 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=70.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHH---HH-hccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPA---EA-AKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~---e~-~~~aDvV~l~vp~~~~~~~ 218 (988)
++|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+ .++++ ++ ++++|.++++++++.....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 5899999999999999999999999999999999999999887643 22222 11 4689999999999876655
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQL 250 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l 250 (988)
+. .......|...++- ....+.....+
T Consensus 481 i~----~~~r~~~p~~~Iia-Ra~~~~~~~~L 507 (601)
T PRK03659 481 IV----ELCQQHFPHLHILA-RARGRVEAHEL 507 (601)
T ss_pred HH----HHHHHHCCCCeEEE-EeCCHHHHHHH
Confidence 54 22333444433333 33335554443
No 278
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.53 E-value=0.022 Score=69.38 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=59.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHH---H-HhccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPA---E-AAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~---e-~~~~aDvV~l~vp~~~~~~~ 218 (988)
-+|-|+|+|.+|+.+++.|.++|++|++.|.|+++++++++.|... .++.+ + -++++|.++++++++.....
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 4799999999999999999999999999999999999999887543 12222 1 14588999999998765444
Q ss_pred HH
Q 001973 219 VL 220 (988)
Q Consensus 219 vl 220 (988)
+.
T Consensus 498 iv 499 (558)
T PRK10669 498 IV 499 (558)
T ss_pred HH
Confidence 43
No 279
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.47 E-value=0.013 Score=61.15 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=31.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVY 178 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~ 178 (988)
..+|+|||+|.||+.+|.+|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999998 69999998
No 280
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.45 E-value=0.014 Score=61.63 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=76.3
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhhCcCC--CCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeE
Q 001973 72 ALDMAKTLAFPLPLLAVAHQQLILGLSHAHA--NDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRV 149 (988)
Q Consensus 72 a~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g--~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kI 149 (988)
..++++..|+.. .++++-+......|.. +.+...+++.+++..+.. ...+|
T Consensus 35 ~~~L~~~~~v~~---~tirrDl~~l~~~G~~~~gy~v~~l~~~~~~~l~~~------------------------~~~rV 87 (213)
T PRK05472 35 SKELAEALGVDS---AQIRKDLSYFGEFGKRGVGYNVEELLEFIEKILGLD------------------------RTWNV 87 (213)
T ss_pred HHHHHHHhCcCH---HHHHHHHHHHHhcCCCCCCeeHHHHHHHHHHHhCCC------------------------CCcEE
Confidence 456777777764 4677777766666543 456666667666655432 11389
Q ss_pred EEEccchHHHHHHHHH--HhCCCeEEE-EeCChhHHHHHHhcCC--cccCCHHHHhcc--CcEEEEEcCChHH
Q 001973 150 GFIGLGAMGFGMATHL--LRSNFTVIG-YDVYRPTLTKFQNVGG--LIANSPAEAAKD--VGVLVIMVTNEAQ 215 (988)
Q Consensus 150 giIG~G~mG~~lA~~L--~~~G~~V~v-~dr~~~~~~~l~~~G~--~~~~s~~e~~~~--aDvV~l~vp~~~~ 215 (988)
+|||+|.+|..++..+ ...|+++.+ +|+++++..... .|. ...+++.+.+++ .|.+++|+|....
T Consensus 88 ~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 88 ALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred EEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 9999999999999864 356788665 698877653221 122 223456666654 8999999998653
No 281
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.41 E-value=0.012 Score=68.23 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=62.6
Q ss_pred EEEEccchHHHHHHHHHHhCC-C-eEEEEeCChhHHHHHHhc--CCcc------cC---CHHHHhccCcEEEEEcCChHH
Q 001973 149 VGFIGLGAMGFGMATHLLRSN-F-TVIGYDVYRPTLTKFQNV--GGLI------AN---SPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~--G~~~------~~---s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|.|+|.|.+|+.++..|++.+ + +|++.||+.++++++.+. +..+ .. ++.++++++|+|+.|+|...
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~- 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF- 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch-
Confidence 789999999999999999987 4 899999999999988753 2110 12 35567788999999987652
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
-..++ + ..+..|.-.||.|- .......+.+...+
T Consensus 80 ~~~v~---~---~~i~~g~~yvD~~~-~~~~~~~l~~~a~~ 113 (386)
T PF03435_consen 80 GEPVA---R---ACIEAGVHYVDTSY-VTEEMLALDEEAKE 113 (386)
T ss_dssp HHHHH---H---HHHHHT-EEEESS--HHHHHHHCHHHHHH
T ss_pred hHHHH---H---HHHHhCCCeeccch-hHHHHHHHHHHHHh
Confidence 23333 1 12334667788332 13334444444443
No 282
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.36 E-value=0.0072 Score=71.23 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hc--CCCHHHHHHHHHhcC-CCccccccccccccCC-C-----CCCCc
Q 001973 314 AGSGVKMANQLLAGVHIASAAEAMAFGA----RL--GLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-D-----YTPYS 380 (988)
Q Consensus 314 ~a~~~Kl~~N~~~~~~~~~~~Ea~~la~----~~--Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~-----~~~~~ 380 (988)
.++.+|.++|.+...++..++|.+.+.+ .+ ++|..++.++.+.|. -.|++++.....+... + +.+.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 4567888889999999999999888866 34 789999999988775 4566655443332221 1 11111
Q ss_pred --hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 381 --ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 381 --~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.+......++.++..+-+.|+|+|.+.++...|+..... .--..+++..+...|..
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~----~~~anliqaqRd~FGaH 454 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQ----NLPANLVQAQRDYFGAH 454 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHHHHHhCCC
Confidence 233444556788999999999999999999966654432 12345888888777753
No 283
>PRK05442 malate dehydrogenase; Provisional
Probab=96.36 E-value=0.01 Score=66.68 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=50.0
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChh--HH----HHHHhc------CCcccCCHHHHhccC
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRP--TL----TKFQNV------GGLIANSPAEAAKDV 203 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~----~~l~~~------G~~~~~s~~e~~~~a 203 (988)
++++||+|||+ |.+|..+|..|...|. ++.++|++++ ++ .++... ...+..+..+.+++|
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da 81 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA 81 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence 45679999998 9999999999988663 7999999543 22 222221 223445666788999
Q ss_pred cEEEEEcCC
Q 001973 204 GVLVIMVTN 212 (988)
Q Consensus 204 DvV~l~vp~ 212 (988)
|+|+++-..
T Consensus 82 DiVVitaG~ 90 (326)
T PRK05442 82 DVALLVGAR 90 (326)
T ss_pred CEEEEeCCC
Confidence 999998754
No 284
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.35 E-value=0.01 Score=64.75 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCeEEEEccchH-HHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGAM-GFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.++++|+|+++++.+..+.
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~------ 216 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLT------ 216 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccC------
Confidence 3479999999999 999999999999999998642 3567788999999999999765221
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 217 ---~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 ---ADMVKPGATVIDVGMN 232 (285)
T ss_pred ---HHHcCCCCEEEEcccc
Confidence 2567899999998865
No 285
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.35 E-value=0.029 Score=58.74 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh-hHHHHHHhcC-CcccC-C-HHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR-PTLTKFQNVG-GLIAN-S-PAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~G-~~~~~-s-~~e~~~~aDvV~l~vp~~~~ 215 (988)
+.++|-|||.|.+|...++.|.+.|++|++++++. +.+..+...+ +.... . ..+.+.++|+||.|+.++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 34699999999999999999999999999998764 2344554443 22211 1 12346789999999988763
No 286
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.31 E-value=0.014 Score=65.33 Aligned_cols=120 Identities=11% Similarity=0.034 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHH-H--hhhc--ccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVW-E--NVLG--VNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMG 158 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~-~--~~~g--~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG 158 (988)
-+...+++.|..|.+.|.-+.....+++.- . ++.. ..+.....--.+......++. ..-...+|-|||+|.||
T Consensus 109 QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~--~~l~~k~vLvIGaGem~ 186 (338)
T PRK00676 109 EIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRR--QKSKKASLLFIGYSEIN 186 (338)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHh--CCccCCEEEEEcccHHH
Confidence 477888999999998876655544444321 0 1111 111111100011111112111 11235699999999999
Q ss_pred HHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEc
Q 001973 159 FGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 159 ~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~v 210 (988)
...+++|.++|. +|++.||+.+.. .+.... ....+....+|+||+|.
T Consensus 187 ~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 187 RKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFGS 234 (338)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEcC
Confidence 999999999995 699999997531 111100 01113346889999873
No 287
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.29 E-value=0.012 Score=68.98 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhC--------C--Ce-EEEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS--------N--FT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~ 212 (988)
++|||+||+|.||..++..|.++ | .+ +.++|+++++...+...+...++++.++++ +.|+|+.|++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 46999999999999999888654 3 34 556799887754332234456788999886 46999999876
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHh
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQF 256 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~ 256 (988)
........ ...+..|+-||.... .......++.+...+
T Consensus 83 ~~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~ 121 (426)
T PRK06349 83 IEPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEE 121 (426)
T ss_pred chHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHH
Confidence 43222222 344556766663321 112334455544444
No 288
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.28 E-value=0.011 Score=60.57 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=51.0
Q ss_pred EEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 149 VGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 149 IgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
|.|+|. |.+|..+++.|.+.||+|++.-|++++.+. ..++++ .++..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679995 999999999999999999999999998887 444332 12446678899999999975
No 289
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.27 E-value=0.86 Score=51.50 Aligned_cols=266 Identities=19% Similarity=0.124 Sum_probs=154.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc----CC---------------------cccCCHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV----GG---------------------LIANSPAEAA 200 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----G~---------------------~~~~s~~e~~ 200 (988)
.+|-|+|.|..+-.+|..|.+.+. .|=+.+|...+.+.+-+. +- .+..+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 489999999999999999998875 699999987776654331 10 1345777888
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhh-hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCC
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVS-ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~-~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~ 279 (988)
.+=|.+|+|||.++ -.+|+ +++-. .|..=+.+|-.|..- +...-+...+...+.++.+++-.---|.....++.
T Consensus 82 g~WdtlILavtaDA-Y~~VL---~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GEWDTLILAVTADA-YLDVL---QQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred ccccEEEEEechHH-HHHHH---HhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 88899999999876 44555 23322 222223344444321 23334455555544455555432111111111110
Q ss_pred -----------eEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH--------------------------
Q 001973 280 -----------LTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK-------------------------- 319 (988)
Q Consensus 280 -----------l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K-------------------------- 319 (988)
-.+.+| ++.....++..+++.+|-.+..+ +.+=.|+.--
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~-~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVM-DNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEe-CChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 114444 24567788889999888665553 3332222211
Q ss_pred -----H-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-C------Ccccccccc--c-----------
Q 001973 320 -----M-----ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-G------SSWMFENRV--P----------- 369 (988)
Q Consensus 320 -----l-----~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~------~s~~~~~~~--~----------- 369 (988)
+ +.-.+..-|...+.|++++.+++|+++=.+++.++... . +....+++. +
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVR 315 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVR 315 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHH
Confidence 0 11122225667789999999999999888888777631 0 000001100 0
Q ss_pred --ccc---------CCCCCCCch----------------hh----HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 370 --HML---------DNDYTPYSA----------------LD----IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 370 --~~~---------~~~~~~~~~----------------l~----~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.++ .|.|- .|+ +. +=..-+.++..+|+.+|+++|.++...+.|+....
T Consensus 316 YtsiLIDPFS~PD~~GrYF-DFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~ 394 (429)
T PF10100_consen 316 YTSILIDPFSEPDEQGRYF-DFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS 394 (429)
T ss_pred hhhheeCCCCCCCCCCCcc-cccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 000 01100 011 11 11233568899999999999999999999998766
Q ss_pred c
Q 001973 419 A 419 (988)
Q Consensus 419 ~ 419 (988)
+
T Consensus 395 ~ 395 (429)
T PF10100_consen 395 Q 395 (429)
T ss_pred H
Confidence 4
No 290
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.27 E-value=0.051 Score=59.89 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHh---CCCe-EEEEeCChhHHHHHHhc-CC---cccCCHHHHhccC--cEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR---SNFT-VIGYDVYRPTLTKFQNV-GG---LIANSPAEAAKDV--GVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~---~G~~-V~v~dr~~~~~~~l~~~-G~---~~~~s~~e~~~~a--DvV~l~vp~~~ 214 (988)
...|+||+|+|.|+.-.++.|.. .+|+ |-++|++.+++.++.+. ++ ++..|.+|++++. |+|.+..|+++
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQ 84 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCcc
Confidence 34699999999999999999974 4677 45569999999888765 33 5688999999865 99999999998
Q ss_pred HHHHHHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
..+-+.. ++ .....+++.. -......++++.+..+. +|+.+.++
T Consensus 85 H~evv~l----~l--~~~K~VL~EKPla~n~~e~~~iveaA~~--rgv~~meg 129 (351)
T KOG2741|consen 85 HYEVVML----AL--NKGKHVLCEKPLAMNVAEAEEIVEAAEA--RGVFFMEG 129 (351)
T ss_pred HHHHHHH----HH--HcCCcEEecccccCCHHHHHHHHHHHHH--cCcEEEee
Confidence 7776641 11 2233455554 24456777788777766 45655554
No 291
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.26 E-value=0.011 Score=69.99 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..||.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4599999999999999999999999999999999999999988876
No 292
>PRK10206 putative oxidoreductase; Provisional
Probab=96.23 E-value=0.033 Score=63.51 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=69.5
Q ss_pred CeEEEEccchHHH-HHHHHHHh--CCCeE-EEEeCChhHHHHHHhcC-CcccCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGF-GMATHLLR--SNFTV-IGYDVYRPTLTKFQNVG-GLIANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~-~lA~~L~~--~G~~V-~v~dr~~~~~~~l~~~G-~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
.||||||+|.++. ..+..+.. .+++| .++|+++++.+...+.+ ....+|.+++++ +.|+|++|+|+....+.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 5899999999775 33454533 35675 46899987653333333 567789999986 579999999998766655
Q ss_pred HccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 220 LYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
. ..+..| ++++..- +.....++++.+...+
T Consensus 82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKS 113 (344)
T ss_pred H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 4 223334 5666542 4456778888777665
No 293
>PRK15076 alpha-galactosidase; Provisional
Probab=96.18 E-value=0.0072 Score=70.61 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=50.5
Q ss_pred CeEEEEccchHHHHHHH--HHH----hCCCeEEEEeCChhHHHHHHh--------cC----CcccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMAT--HLL----RSNFTVIGYDVYRPTLTKFQN--------VG----GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~~--------~G----~~~~~s~~e~~~~aDvV~l 208 (988)
+||+|||.|.||...+. .++ -.+++|+++|+++++.+.... .+ +..+++..+++++||+||+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999977665 444 245799999999988763221 12 2346788899999999999
Q ss_pred EcCCh
Q 001973 209 MVTNE 213 (988)
Q Consensus 209 ~vp~~ 213 (988)
+.-..
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 98764
No 294
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.14 E-value=0.0085 Score=59.90 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=52.0
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |..|+.|+.-..+.||+|+..-||++++..+... .+--.++..+.+..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 69999995 9999999999999999999999999998664211 1111234457778899999887544
No 295
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.13 E-value=0.01 Score=68.03 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhcC-------CcccCCHH-HHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNVG-------GLIANSPA-EAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~-e~~~~aDvV~l~vp~~~~ 215 (988)
++||+|+|+ |+.|..+.+.|.++ .++|+.+.++++.-+.+.... .....+.+ +.++++|+||+|+|+..
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~- 116 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT- 116 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH-
Confidence 369999997 99999999999998 678998877654433332221 11111222 22478999999999864
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
..++. +.+..|..|||+|+..
T Consensus 117 s~~i~-------~~~~~g~~VIDlSs~f 137 (381)
T PLN02968 117 TQEII-------KALPKDLKIVDLSADF 137 (381)
T ss_pred HHHHH-------HHHhCCCEEEEcCchh
Confidence 33332 3344689999999753
No 296
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.12 E-value=0.031 Score=62.79 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=50.1
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCCh--hHHH----HHHhc------CCcccCCHHHHhccCc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYR--PTLT----KFQNV------GGLIANSPAEAAKDVG 204 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------G~~~~~s~~e~~~~aD 204 (988)
+..||+|||+ |.+|+.+|..|...|. ++.++|+++ ++++ ++.+. +..+..+..+.+++||
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 81 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD 81 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence 3469999998 9999999999998884 799999954 2222 22221 1233345667889999
Q ss_pred EEEEEcCCh
Q 001973 205 VLVIMVTNE 213 (988)
Q Consensus 205 vV~l~vp~~ 213 (988)
+|+++-..+
T Consensus 82 vVVitAG~~ 90 (323)
T TIGR01759 82 AALLVGAFP 90 (323)
T ss_pred EEEEeCCCC
Confidence 999987653
No 297
>PLN02602 lactate dehydrogenase
Probab=96.10 E-value=0.022 Score=64.58 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=48.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHH----Hhc----C-Cccc--CCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKF----QNV----G-GLIA--NSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~----G-~~~~--~s~~e~~~~aDvV~l~vp~ 212 (988)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++.. ... + ..+. .+.++ +++||+|+++...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCC
Confidence 699999999999999999998885 799999988765432 221 1 2222 34444 8899999998654
No 298
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.10 E-value=0.036 Score=54.51 Aligned_cols=113 Identities=23% Similarity=0.237 Sum_probs=67.7
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQA 216 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~~ 216 (988)
||.|||+|.+|+.++.+|++.|. +++++|.+.-....+... |...++...+.++ ..++-+.+.+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999997 699999875444444332 2222222222221 113333333321111
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
. .....+.+.++||+++.. +.....+.+.+.+ .+..|+++-..+
T Consensus 81 ~-------~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~--~~i~~i~~~~~g 124 (143)
T cd01483 81 D-------NLDDFLDGVDLVIDAIDN-IAVRRALNRACKE--LGIPVIDAGGLG 124 (143)
T ss_pred h-------hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 1 112334567888888776 5556667777766 567777766544
No 299
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.09 E-value=0.0099 Score=67.04 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=55.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeE---EEEeCChhHHH-HHHhcC--CcccC-CHHHHhccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTV---IGYDVYRPTLT-KFQNVG--GLIAN-SPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~-~l~~~G--~~~~~-s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+|+||+|+|+ |+.|..+.+.|.+++|++ ... .+.+... .+.-.| ..+.. +..+ ++++|++|+|+|....
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~s- 79 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAVS- 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHHH-
Confidence 3479999996 999999999999877753 233 3332221 111112 22221 2223 5789999999997543
Q ss_pred HHHHccccchhhhCCCCCEEEecCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
..+. ..+ ...|..+||.|+-
T Consensus 80 ~~~v---~~~---~~~G~~VIDlS~~ 99 (336)
T PRK05671 80 RSFA---EKA---RAAGCSVIDLSGA 99 (336)
T ss_pred HHHH---HHH---HHCCCeEEECchh
Confidence 3333 122 2468899999975
No 300
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.97 E-value=0.02 Score=57.17 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=54.6
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++.|||-+. +|.+++..|.++|..|++.+.+ +.++++.++++|+||++++.+..++
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~--------------T~~l~~~~~~ADIVVsa~G~~~~i~------- 94 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK--------------TKNLQEITRRADIVVSAVGKPNLIK------- 94 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT--------------SSSHHHHHTTSSEEEE-SSSTT-B--------
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC--------------CCcccceeeeccEEeeeeccccccc-------
Confidence 35899999995 9999999999999999998765 3567788899999999999876322
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
..++++|.++||++...
T Consensus 95 --~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 95 --ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp --GGGS-TTEEEEE--CEE
T ss_pred --cccccCCcEEEecCCcc
Confidence 23578999999988764
No 301
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=95.96 E-value=0.015 Score=63.21 Aligned_cols=96 Identities=22% Similarity=0.194 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCccccccccccccCCCCCCCchhhHHHH---
Q 001973 315 GSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIIT---DSGGSSWMFENRVPHMLDNDYTPYSALDIFVK--- 387 (988)
Q Consensus 315 a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~k--- 387 (988)
|+.+||++|.....++++++|+..+.++ .|++.+++.+++. .+...|++++.....+...+..+.+-++....
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 5789999999999999999999999985 6888877766665 45567777665444333333222232322211
Q ss_pred ---HHHHHHHHHHhCCCCchHHHHHH
Q 001973 388 ---DMGIIARECLSQRVPLHISTIAH 410 (988)
Q Consensus 388 ---Dl~~~~~~a~~~gi~~pi~~a~~ 410 (988)
.-++....|-+.|+|+|++.+++
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 12478899999999999876543
No 302
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.92 E-value=0.017 Score=63.75 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=51.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-C----CcccC---CHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-G----GLIAN---SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G----~~~~~---s~~e~~~~aDvV~l~vp~~ 213 (988)
.++.|||+|-+|.+++..|++.|. +|+++||+.++.+.+.+. + +.... +..+...++|+||-|+|..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 479999999999999999999996 699999999999888653 1 11111 2224456788888888764
No 303
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.87 E-value=0.036 Score=59.12 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=61.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC---eEEEEeCC----hhHH-------HHHHhc-CC-cccCCHHHHhccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF---TVIGYDVY----RPTL-------TKFQNV-GG-LIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~---~V~v~dr~----~~~~-------~~l~~~-G~-~~~~s~~e~~~~aDvV~l~ 209 (988)
.+||.|+|+|.+|.+++..|.+.|. +|+++||+ .++. ..+.+. +. ....++.++++++|++|-+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIga 104 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGV 104 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeC
Confidence 3589999999999999999999996 59999999 4442 223222 11 1113677888899999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
+|.....+ ...+.+.++.+|.+.++
T Consensus 105 T~~G~~~~-------~~l~~m~~~~ivf~lsn 129 (226)
T cd05311 105 SRPGVVKK-------EMIKKMAKDPIVFALAN 129 (226)
T ss_pred CCCCCCCH-------HHHHhhCCCCEEEEeCC
Confidence 87332112 23344557778888883
No 304
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.86 E-value=0.06 Score=63.12 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=47.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.+|.|||+|.+|.++|..|.+.|++|+++|+++..........-....+......++|++|.+.+.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 5899999999999999999999999999998876443211100011223344457799988887544
No 305
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.84 E-value=0.026 Score=65.23 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=67.1
Q ss_pred CeEEEEccchHHH-HHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc---c---------------c--CCHHH---Hhcc
Q 001973 147 TRVGFIGLGAMGF-GMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL---I---------------A--NSPAE---AAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~-~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~---~---------------~--~s~~e---~~~~ 202 (988)
|||.++|+|+||+ .++..|.+.|++|++.|++++.++.+++.|.. . . .+.++ .+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 5899999999998 55888999999999999999999999988631 0 0 12122 3347
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCC-------CCCEEEecCCCCHHHHHHHHHHHH
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALS-------SGASIILSSTVSPGFVSQLERRLQ 255 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~-------~g~ivId~st~~p~~~~~l~~~l~ 255 (988)
+|+|.+++.... .+.+. ..+.+.|. .+.+.|-++-..+.....+.+.+.
T Consensus 81 ~dlvt~~v~~~~-~~s~~---~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAVGPNI-LPFIA---PLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCCCccc-chhHH---HHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHH
Confidence 899988887543 23322 12222221 222334444445666666665543
No 306
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.84 E-value=0.061 Score=66.14 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHH---H-HhccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPA---E-AAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~---e-~~~~aDvV~l~vp~~~~~~ 217 (988)
..+|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+ .++++ + -++++|.++++++++..-.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 35899999999999999999999999999999999999999887643 22332 1 1458999999999977555
Q ss_pred HHH
Q 001973 218 SVL 220 (988)
Q Consensus 218 ~vl 220 (988)
.+.
T Consensus 480 ~i~ 482 (621)
T PRK03562 480 QLV 482 (621)
T ss_pred HHH
Confidence 554
No 307
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.81 E-value=0.031 Score=61.01 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-|. +|.++|..|.+.|..|++++.. +.++.+.++++|+||.+++.+..+.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~------- 217 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIP------- 217 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccccc-------
Confidence 47999999999 9999999999999999999764 3467888999999999997766322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 218 --~~~vk~gavVIDvGin 233 (285)
T PRK10792 218 --GEWIKPGAIVIDVGIN 233 (285)
T ss_pred --HHHcCCCcEEEEcccc
Confidence 2457899999998865
No 308
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.80 E-value=0.031 Score=62.77 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=49.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChhH--H----HHHHhc------CCcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRPT--L----TKFQNV------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~----~~l~~~------G~~~~~s~~e~~~~aDvV 206 (988)
+||+|||+ |.+|..+|..|+..|. ++.++|++.+. + .++... ...+..+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 59999999 9999999999998875 79999995432 2 122221 123345566788999999
Q ss_pred EEEcCCh
Q 001973 207 VIMVTNE 213 (988)
Q Consensus 207 ~l~vp~~ 213 (988)
|++-..+
T Consensus 83 vitaG~~ 89 (322)
T cd01338 83 LLVGAKP 89 (322)
T ss_pred EEeCCCC
Confidence 9987653
No 309
>PRK05086 malate dehydrogenase; Provisional
Probab=95.77 E-value=0.037 Score=62.01 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=48.3
Q ss_pred CeEEEEcc-chHHHHHHHHHHh---CCCeEEEEeCChhHH---HHHHhcC--Ccc----cCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLR---SNFTVIGYDVYRPTL---TKFQNVG--GLI----ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~G--~~~----~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |.+|.+++..|.. .++++.++|+++... -++.+.+ ..+ .+++.+.++++|+||+|...+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 59999999 9999999988854 347899999985431 1333312 111 346567788999999998753
No 310
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.77 E-value=0.02 Score=54.22 Aligned_cols=102 Identities=15% Similarity=0.222 Sum_probs=64.7
Q ss_pred CeEEEEc----cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIG----LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG----~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++|+||| -+.+|..+..+|.++|++|+..+.....+ .|.....++.|.-...|++++++|... +.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~-~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDK-VPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHH-HHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHH-HHHHH--
Confidence 3799999 79999999999999999999998765433 267778888884478999999999765 44444
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+++.. +..+.+|+..++ ..+++.+.+.+ .|+.++
T Consensus 73 -~~~~~-~g~~~v~~~~g~----~~~~~~~~a~~--~gi~vi 106 (116)
T PF13380_consen 73 -DEAAA-LGVKAVWLQPGA----ESEELIEAARE--AGIRVI 106 (116)
T ss_dssp -HHHHH-HT-SEEEE-TTS------HHHHHHHHH--TT-EEE
T ss_pred -HHHHH-cCCCEEEEEcch----HHHHHHHHHHH--cCCEEE
Confidence 33333 234566666663 33444444444 466665
No 311
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.75 E-value=0.031 Score=61.79 Aligned_cols=91 Identities=20% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-----CC---cc-cCCHHHH-hccCcEEEEEcCCh
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-----GG---LI-ANSPAEA-AKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-----G~---~~-~~s~~e~-~~~aDvV~l~vp~~ 213 (988)
|+||+||| .|+-|..+.+.|..+.+ ++..+..+..+-+.+.+. |. .+ ..++++. .++||+||+|+|+.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg 81 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG 81 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence 47999997 59999999999998764 666665444322333321 21 11 1233333 44699999999998
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
...+-+- ..+.+|..|||+|+-.
T Consensus 82 ~s~~~v~-------~l~~~g~~VIDLSadf 104 (349)
T COG0002 82 VSAELVP-------ELLEAGCKVIDLSADF 104 (349)
T ss_pred hHHHHHH-------HHHhCCCeEEECCccc
Confidence 8655543 2234577799999854
No 312
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.69 E-value=0.023 Score=63.89 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=50.6
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp 211 (988)
|||.|.| .|.+|+.++..|.++||+|++.+|++++...+...|+.+ .+++.++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899999 599999999999999999999999987766555545432 1234566778888887654
No 313
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.67 E-value=0.026 Score=63.44 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=64.3
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhcC-CcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRS-N-FTVIGYDVYRPTLTKFQNVG-GLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~G-~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
..++|.|+|+ |.||+.+++.|+.+ | .++++++|+.++...+..+- .....++.+++.++|+|+.+...+..+ ++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~--~I 231 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV--EI 231 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--cC
Confidence 3468999998 89999999999854 5 68999999998888776541 112235778888999999888654421 11
Q ss_pred ccccchhhhCCCCCEEEecC
Q 001973 221 YGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~s 240 (988)
. ...+.++.++||.+
T Consensus 232 -~----~~~l~~~~~viDiA 246 (340)
T PRK14982 232 -D----PETLKKPCLMIDGG 246 (340)
T ss_pred -C----HHHhCCCeEEEEec
Confidence 0 12346778888876
No 314
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.59 E-value=0.032 Score=61.32 Aligned_cols=75 Identities=21% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||.|. +|.+++..|.+.|.+|+++++. +.++.+.++++|+||.+++.+.- +
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~~~~----v--- 216 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGKPEL----I--- 216 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCCCCc----C---
Confidence 346999999998 9999999999999999999973 23455666899999999975441 2
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
. .+.+++|.+++|....
T Consensus 217 ~--~~~lk~gavViDvg~n 233 (283)
T PRK14192 217 K--KDWIKQGAVVVDAGFH 233 (283)
T ss_pred C--HHHcCCCCEEEEEEEe
Confidence 1 2457889999998754
No 315
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.58 E-value=0.073 Score=63.05 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=50.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh-hHH----HHHHhcCCcc--cCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR-PTL----TKFQNVGGLI--ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~-~~~----~~l~~~G~~~--~~s~~e~~~~aDvV~l~vp~ 212 (988)
.++|.|+|.|.+|.++|..|++.|++|+++|++. +.. +++.+.|+.+ .+...+....+|+||.+...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 4689999999999999999999999999999985 333 3444446543 23334556789999987654
No 316
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.58 E-value=0.048 Score=63.44 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=52.3
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhC-------CC--eEEEEeCChhHHHHHH----hc------CCcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRS-------NF--TVIGYDVYRPTLTKFQ----NV------GGLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~----~~------G~~~~~s~~e~~~~aDv 205 (988)
..||+|||+ |.+|..+|..|+.. |. ++.++|++.++++-.. .. .+.+..+.-+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 469999999 99999999999987 64 7999999988765422 11 23334556678899999
Q ss_pred EEEEcCCh
Q 001973 206 LVIMVTNE 213 (988)
Q Consensus 206 V~l~vp~~ 213 (988)
||++-..+
T Consensus 180 VVitAG~p 187 (444)
T PLN00112 180 ALLIGAKP 187 (444)
T ss_pred EEECCCCC
Confidence 99987654
No 317
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.58 E-value=0.11 Score=54.49 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=72.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-HHHHHHhcC-Cccc--CCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-TLTKFQNVG-GLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G-~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
..+|.|||.|.+|..-++.|.+.|.+|++++.+.. ....+.+.| +... +-..+.+.++++||.++.++..-..+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~ 88 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAH 88 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHH
Confidence 46999999999999999999999999999987653 445555544 2221 1113456789999999888743222220
Q ss_pred ------------cccc----hhh-hCCCCCEEEecCC--CCHHHHHHHHHHHHh
Q 001973 222 ------------GDLG----AVS-ALSSGASIILSST--VSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ------------~~~~----i~~-~l~~g~ivId~st--~~p~~~~~l~~~l~~ 256 (988)
+..+ +.+ ....|.+.|-.|| .+|..++.+.+.+.+
T Consensus 89 ~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 89 AARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred HHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 0000 111 1234566665554 478888888777765
No 318
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.55 E-value=0.069 Score=53.47 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=67.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-Cccc-CCH-HHHhccCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-GLIA-NSP-AEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-~~~~-~s~-~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+.++|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.+ +... ..+ ++-++++|+||.++.++..-..+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~ 89 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQ 89 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHH
Confidence 35799999999999999999999999999996 44444444432 1111 111 1235789999999887762222210
Q ss_pred cccc---------------hhh-hCCCCCEEEecCC--CCHHHHHHHHHHHHh
Q 001973 222 GDLG---------------AVS-ALSSGASIILSST--VSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~---------------i~~-~l~~g~ivId~st--~~p~~~~~l~~~l~~ 256 (988)
..+. ..+ ....+.+.|-.|| .+|..++.+.+.+.+
T Consensus 90 ~a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 90 AAHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred HHHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 0000 011 1234455555544 578888888777765
No 319
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.47 E-value=0.063 Score=56.22 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~ 180 (988)
..||.|||+|.+|+.++.+|++.|. +++++|.+.-
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 4689999999999999999999996 8999998843
No 320
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.46 E-value=0.3 Score=51.64 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=94.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh----------hHHHHHHhcCC-cccC-----CHHHH-hccCcEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR----------PTLTKFQNVGG-LIAN-----SPAEA-AKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~l~~~G~-~~~~-----s~~e~-~~~aDvV~ 207 (988)
.++|+|.|+|++|+.+|+.|.+.|. .|.+.|.+. +.++...+.+. .... +..+. ..+||+++
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVli 102 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFA 102 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEe
Confidence 3699999999999999999999988 577789887 66665554431 1111 11222 23899999
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCC
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGT 287 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~ 287 (988)
-|.+......+. ...++ -++|+...+. |-+. +-.+.+.+ +|+.|+.-.+. ..|. ++++.
T Consensus 103 paA~~~~i~~~~-------a~~l~-a~~V~e~AN~-p~t~-~a~~~L~~--~Gi~v~Pd~~~------NaGG--vi~s~- 161 (217)
T cd05211 103 PCALGNVIDLEN-------AKKLK-AKVVAEGANN-PTTD-EALRILHE--RGIVVAPDIVA------NAGG--VIVSY- 161 (217)
T ss_pred eccccCccChhh-------HhhcC-ccEEEeCCCC-CCCH-HHHHHHHH--CCcEEEChHHh------cCCC--eEeEH-
Confidence 998765422222 22232 3455555443 3333 45566666 46555532211 1111 11111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 001973 288 EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNII 354 (988)
Q Consensus 288 ~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l 354 (988)
++..+. .. ..++ .. +-+.+-+...+...+.+.+..+++.|+++.+....+
T Consensus 162 ---~E~~q~----~~-~~~w-----~~----~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 211 (217)
T cd05211 162 ---FEWVQN----LQ-RLSW-----DA----EEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANIL 211 (217)
T ss_pred ---HHhcCC----cc-ccCC-----CH----HHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 111110 00 0111 11 112333444556678889999999999988776554
No 321
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.45 E-value=0.027 Score=62.57 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=54.3
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
++||+||| .|+.|..+.+.|.++.+ ++.....+..+ .. .+.++..+++|++|+|+|+....+-+-
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s~~~~~--- 68 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAAREAVA--- 68 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHHHHHHH---
Confidence 36999999 89999999999998874 33333222211 11 233455678999999999876444332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
.+ ...|..|||.|+.
T Consensus 69 -~~---~~~g~~VIDlSad 83 (313)
T PRK11863 69 -LI---DNPATRVIDASTA 83 (313)
T ss_pred -HH---HhCCCEEEECChh
Confidence 22 2468999999974
No 322
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.44 E-value=0.038 Score=60.27 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=60.6
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-| .+|.++|..|.+.|..|++++.. +.++.+.+++||+|+.+++.+.-+.
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~--------------t~~l~~~~~~ADIvV~AvG~p~~i~------ 215 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL--------------TKDLSFYTQNADIVCVGVGKPDLIK------ 215 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC--------------cHHHHHHHHhCCEEEEecCCCCcCC------
Confidence 34799999999 99999999999999999998643 2345678899999999998876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 216 ---~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 216 ---ASMVKKGAVVVDIGIN 231 (285)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2356899999998765
No 323
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.44 E-value=0.045 Score=59.77 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=61.3
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++.|||-+. +|.++|..|.+.|..|++++.. +.++.+.++++|+||.++.-+..+.
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~------- 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIK------- 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccC-------
Confidence 47999999999 9999999999999999999843 3467788899999999998766322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 223 --~~~vk~gavVIDvGin 238 (287)
T PRK14176 223 --ADMVKEGAVIFDVGIT 238 (287)
T ss_pred --HHHcCCCcEEEEeccc
Confidence 2357789999998865
No 324
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.11 Score=61.55 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=50.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhcCCccc--CCHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-----TLTKFQNVGGLIA--NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~v 210 (988)
+||+|+|+|..|.++|+.|.+.|++|+++|+++. ..+++.+.|+.+. ....+.+.++|+||.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 5899999999999999999999999999998752 2345777787553 22345567899998874
No 325
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.40 E-value=0.11 Score=61.58 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=64.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--CCcc-c---CCHH----HHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--GGLI-A---NSPA----EAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--G~~~-~---~s~~----e~~~~aDvV~l~vp~~~~ 215 (988)
+++|-|+|+|.+|..+++.|.+.|++|++.|+++++.+.+.+. +... . ++.. ..++++|.|+++.+++..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~ 310 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEA 310 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHH
Confidence 5789999999999999999999999999999999999988775 3321 1 2222 124688999988887542
Q ss_pred HHHHHccccchhhhCCCCCEEEecCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
-. .. ..+...+....+++-+.+
T Consensus 311 n~-~~---~~~~~~~~~~~ii~~~~~ 332 (453)
T PRK09496 311 NI-LS---SLLAKRLGAKKVIALVNR 332 (453)
T ss_pred HH-HH---HHHHHHhCCCeEEEEECC
Confidence 11 11 122344455566665544
No 326
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.32 E-value=0.069 Score=54.50 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=29.8
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
||.|||+|.+|+.++.+|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999997 599999886
No 327
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.30 E-value=0.032 Score=51.95 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHH---hcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCC
Q 001973 157 MGFGMATHLLRSNFTVIGYDVYRPTLTKFQ---NVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSG 233 (988)
Q Consensus 157 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~---~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g 233 (988)
-+..|+..|.+.|.+|.+||..-....... ..+...++++.++.+++|.|+++++.+.- +.+- .+++...+.++
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f-~~l~--~~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEF-RELD--WEEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGG-GCCG--HHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHH-hccC--HHHHHHhcCCC
Confidence 345688999999999999998766554444 25788889999999999999999998763 2211 13455667788
Q ss_pred CEEEecCCC
Q 001973 234 ASIILSSTV 242 (988)
Q Consensus 234 ~ivId~st~ 242 (988)
.+|+|+-++
T Consensus 95 ~~iiD~~~~ 103 (106)
T PF03720_consen 95 PVIIDGRNI 103 (106)
T ss_dssp EEEEESSST
T ss_pred CEEEECccc
Confidence 999998654
No 328
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.26 E-value=0.08 Score=62.93 Aligned_cols=112 Identities=23% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCCeEEEEccchHHHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhcCCccc-CCHHHHhccCcEEEEEcCCh---HHHHH
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIA-NSPAEAAKDVGVLVIMVTNE---AQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~-~s~~e~~~~aDvV~l~vp~~---~~~~~ 218 (988)
..++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..++|.+.|+.+. ....+.+.++|+|+.+-.-+ ..++.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~ 85 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVA 85 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHH
Confidence 4468999999999999 89999999999999997643 3455766677653 22334566899888765322 22332
Q ss_pred HHc------cccchhhhC-CCCCEEEecCCC-CHHHHHHHHHHHHh
Q 001973 219 VLY------GDLGAVSAL-SSGASIILSSTV-SPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~------~~~~i~~~l-~~g~ivId~st~-~p~~~~~l~~~l~~ 256 (988)
... +.-+++..+ .+..+|..+.|. +..++.-+...+..
T Consensus 86 a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~ 131 (461)
T PRK00421 86 ARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE 131 (461)
T ss_pred HHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 211 111232222 233455555544 44455555666665
No 329
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.23 E-value=0.048 Score=60.79 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=47.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCChhH--HHHHHhc--CCcc----c-CCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN--FTVIGYDVYRPT--LTKFQNV--GGLI----A-NSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G--~~V~v~dr~~~~--~~~l~~~--G~~~----~-~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |.+|..+|..|+..| .++.++|++... +-+|... .... . +++.+.+++||+|+++...+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 59999999 999999999999888 479999987111 1123322 1111 1 23467889999999998654
No 330
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.19 E-value=0.038 Score=61.66 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=47.6
Q ss_pred eEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
||+|||+|.+|..+|..|+..+. ++.++|+++++++. |... ......+.-+.+++||+|+++...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 79999999999999999998885 79999998765432 3321 112222334678899999987654
No 331
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.19 E-value=0.097 Score=59.94 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEE--eCChhHHHHHHh----------cCCcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGY--DVYRPTLTKFQN----------VGGLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~----------~G~~~~~s~~e~~~~aDv 205 (988)
..||+|||+ |.+|..+|..|+..|. .+.++ |++.++++.... .++.+.++..+.+++||+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 469999999 9999999999998773 34445 888777643221 123334556678899999
Q ss_pred EEEEcCCh
Q 001973 206 LVIMVTNE 213 (988)
Q Consensus 206 V~l~vp~~ 213 (988)
||++-..+
T Consensus 124 VVitAG~p 131 (387)
T TIGR01757 124 ALLIGAKP 131 (387)
T ss_pred EEECCCCC
Confidence 99986554
No 332
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.17 E-value=0.095 Score=59.58 Aligned_cols=106 Identities=23% Similarity=0.267 Sum_probs=61.1
Q ss_pred CeEEEEccchHHHHHHHHHHhC----------CCe-EEEEeC----------ChhHHHHHHhc-CC-c------ccCCHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS----------NFT-VIGYDV----------YRPTLTKFQNV-GG-L------IANSPA 197 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~----------G~~-V~v~dr----------~~~~~~~l~~~-G~-~------~~~s~~ 197 (988)
++|+|+|+|.||..+++.|.++ +.+ |-++|+ +.++...+.+. +. . ...++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5999999999999999999865 345 445575 34444443332 21 1 134778
Q ss_pred HHhc--cCcEEEEEcCChHHH-HHHHccccchhhhCCCCCEEEecCCCCHH--HHHHHHHHHHh
Q 001973 198 EAAK--DVGVLVIMVTNEAQA-ESVLYGDLGAVSALSSGASIILSSTVSPG--FVSQLERRLQF 256 (988)
Q Consensus 198 e~~~--~aDvV~l~vp~~~~~-~~vl~~~~~i~~~l~~g~ivId~st~~p~--~~~~l~~~l~~ 256 (988)
++++ +.|+|+.|+|+.... +... +-+...+..|.-||..+. .|- ...++.+...+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~---~~~~~aL~~GkhVVtaNK-~pla~~~~eL~~~A~~ 142 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPAL---SHCRKALERGKHVVTSNK-GPLALAYKELKELAKK 142 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHH---HHHHHHHHCCCEEEcCCc-HHHHhhHHHHHHHHHH
Confidence 8774 679999999864321 0001 112344556766664332 232 33455554444
No 333
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.16 E-value=0.054 Score=61.81 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=57.6
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh---------------cCCccc-CCHHHHhccCcEEE
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN---------------VGGLIA-NSPAEAAKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---------------~G~~~~-~s~~e~~~~aDvV~ 207 (988)
++||+|+| .|.+|..+.+.|.++.+ ++.++.++++...+... ....+. .++ +...++|+||
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~DvVf 81 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDVDIVF 81 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCCCEEE
Confidence 46999998 89999999999998764 88887666544322111 011121 233 3447899999
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.|+|..... .+. +.+ ...|..+||.|..
T Consensus 82 ~a~p~~~s~-~~~---~~~---~~~G~~vIDls~~ 109 (349)
T PRK08664 82 SALPSDVAG-EVE---EEF---AKAGKPVFSNASA 109 (349)
T ss_pred EeCChhHHH-HHH---HHH---HHCCCEEEECCch
Confidence 999986532 222 111 2357889998864
No 334
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.15 E-value=0.032 Score=60.31 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=70.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCc------ccCCHHHHhccCcEEEEEcCCh--HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGL------IANSPAEAAKDVGVLVIMVTNE--AQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~------~~~s~~e~~~~aDvV~l~vp~~--~~~~ 217 (988)
-||.|||.|-+|+.-|+...-.|-+|++.|+|.+++..+-.. +.+ -...+++.+.++|++|-+|--+ ++-+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 489999999999999999999999999999999998877653 322 1234678889999999876433 3222
Q ss_pred HHHccccchhhhCCCCCEEEecC
Q 001973 218 SVLYGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~s 240 (988)
-+. ++..+.++||.+|||..
T Consensus 249 Lvt---~e~vk~MkpGsVivDVA 268 (371)
T COG0686 249 LVT---REMVKQMKPGSVIVDVA 268 (371)
T ss_pred ehh---HHHHHhcCCCcEEEEEE
Confidence 232 46677899999999975
No 335
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.13 E-value=0.15 Score=60.24 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh----HHHHHHhcCCccc--CCHHHHhcc-CcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP----TLTKFQNVGGLIA--NSPAEAAKD-VGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~----~~~~l~~~G~~~~--~s~~e~~~~-aDvV~l~v 210 (988)
.++|.|+|.|.+|.++|+.|++.|++|+++|++.. ..+.+.+.|+.+. ....+...+ .|+|+.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 35899999999999999999999999999998652 2355666676543 334454444 89887765
No 336
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.13 E-value=0.11 Score=58.59 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=47.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC-------CeEEEEeCChhH--HHH----HHh------cCCcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN-------FTVIGYDVYRPT--LTK----FQN------VGGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G-------~~V~v~dr~~~~--~~~----l~~------~G~~~~~s~~e~~~~aDvV 206 (988)
.||+|+|+ |.+|+.++..|...+ .+|.++|+++.. .+. +.. .......++.+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 58999999 999999999999854 589999996531 221 111 0122345667888999999
Q ss_pred EEEcCC
Q 001973 207 VIMVTN 212 (988)
Q Consensus 207 ~l~vp~ 212 (988)
|++-..
T Consensus 83 I~tAG~ 88 (325)
T cd01336 83 ILVGAM 88 (325)
T ss_pred EEeCCc
Confidence 998654
No 337
>PLN00106 malate dehydrogenase
Probab=95.10 E-value=0.093 Score=58.88 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=48.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCChhHH--HHHHhcC----Cc---ccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYRPTL--TKFQNVG----GL---IANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~G----~~---~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... -+|.... +. -.+++.++++++|+|+++...+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 59999999 9999999999997764 899999977211 1232211 11 2344578899999999987653
No 338
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.09 E-value=0.049 Score=61.24 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=48.4
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCCh--hHHHH----HHhc------CCcccCCHHHHhccCcEEE
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYR--PTLTK----FQNV------GGLIANSPAEAAKDVGVLV 207 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~------G~~~~~s~~e~~~~aDvV~ 207 (988)
||+|||+ |.+|+.++..|+..|. ++.++|+++ +..+- +.+. +..+..+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999998662 599999987 44321 1111 1223356678899999999
Q ss_pred EEcCCh
Q 001973 208 IMVTNE 213 (988)
Q Consensus 208 l~vp~~ 213 (988)
++-..+
T Consensus 82 itAG~~ 87 (323)
T cd00704 82 LVGAFP 87 (323)
T ss_pred EeCCCC
Confidence 987554
No 339
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.06 E-value=0.11 Score=55.25 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=68.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEE-EEeC----------ChhHHHHHHhcCC--------cccCCHHHH-hccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVI-GYDV----------YRPTLTKFQNVGG--------LIANSPAEA-AKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~G~--------~~~~s~~e~-~~~aDv 205 (988)
.++|+|.|+|++|..++..|.+.|.+|+ +.|. +.+.+.++.+..- ... ++.+. -.+||+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv 109 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI 109 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence 3699999999999999999999999988 6677 6676666554321 111 12222 237899
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++-|.+......+.. +.++ -++|+...+. |-+ .+..+.+.+ +|+.|+
T Consensus 110 lip~a~~~~i~~~~~-------~~l~-a~~I~egAN~-~~t-~~a~~~L~~--rGi~~~ 156 (227)
T cd01076 110 LIPAALENQITADNA-------DRIK-AKIIVEAANG-PTT-PEADEILHE--RGVLVV 156 (227)
T ss_pred EEecCccCccCHHHH-------hhce-eeEEEeCCCC-CCC-HHHHHHHHH--CCCEEE
Confidence 999987655333332 2232 3455555544 444 556667766 567666
No 340
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.066 Score=58.27 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.++|..|.++|..|++++.. +.++.+.+++||+|+++++.+.-+.
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~------ 215 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLIT------ 215 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccC------
Confidence 34699999999 89999999999999999988532 3456788999999999999876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 216 ---~~~vk~gavvIDvGin 231 (281)
T PRK14183 216 ---EDMVKEGAIVIDIGIN 231 (281)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2457799999998865
No 341
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.99 E-value=0.1 Score=57.80 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=47.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhc------CCcccC-CHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNV------GGLIAN-SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~------G~~~~~-s~~e~~~~aDvV~l~vp~~ 213 (988)
+||+|||.|.+|+++|..|...+ .++.+||+..++.+- |.+. ...... ..-+.++++|+|+++..-|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 48999999999999999998766 489999999554332 2221 112222 2246688999999998433
No 342
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.99 E-value=0.045 Score=61.99 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=58.0
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeE---EEEeCChhHHHHHHhcC--CcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTV---IGYDVYRPTLTKFQNVG--GLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~G--~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+||+||| .|+.|..+.+.|.++||++ ....++.+.-+.+.-.| +.+.+...+.++++|+||+|+|.....+ +.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~-~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKK-YA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHH-HH
Confidence 6999997 5999999999999988853 66654443333332112 2222222234578999999999876433 32
Q ss_pred ccccchhhhCCCCCEEEecCCC
Q 001973 221 YGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~ 242 (988)
..++..|..|||.|+.
T Consensus 81 ------~~~~~~G~~VIDlS~~ 96 (334)
T PRK14874 81 ------PKAAAAGAVVIDNSSA 96 (334)
T ss_pred ------HHHHhCCCEEEECCch
Confidence 1234568899999974
No 343
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.97 E-value=0.065 Score=60.05 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhcC--Ccc--cCC---HHHHhccCcEEEEEcCC
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSN--FTVIGYDVYRPTL--TKFQNVG--GLI--ANS---PAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~--~~l~~~G--~~~--~~s---~~e~~~~aDvV~l~vp~ 212 (988)
+|.||+|||+ |.+|+.+|..|+..+ .++.++|++.... .++.+.. ..+ .++ ..+++++||+|+++...
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 3569999999 999999999999655 6899999943222 1233221 112 222 26788999999998866
Q ss_pred h
Q 001973 213 E 213 (988)
Q Consensus 213 ~ 213 (988)
+
T Consensus 87 ~ 87 (321)
T PTZ00325 87 P 87 (321)
T ss_pred C
Confidence 4
No 344
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.94 E-value=0.1 Score=57.19 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=102.9
Q ss_pred ccCCCCcchHHHHHHhHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhhC---------------c---CCCCCchhH
Q 001973 53 LRGDAKLHFLNAFIQNLGIALDMAKTL-----AFPLPLLAVAHQQLILGLSH---------------A---HANDDNPPL 109 (988)
Q Consensus 53 ~~~~~~~f~l~l~~KDl~la~~~a~~~-----g~~~p~~~~~~~~~~~a~~~---------------G---~g~~D~~~~ 109 (988)
++..|.+|.+. ..|+..+++-.+.. .+.+|.=+.+.+++++..+. | .-+.|+..+
T Consensus 34 l~~~Y~a~~v~--~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~~iGAVNTl~~~~~g~l~G~NTD~~G~ 111 (283)
T COG0169 34 LDYVYLAFEVP--PEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELSPRARLIGAVNTLVREDDGKLRGYNTDGIGF 111 (283)
T ss_pred CCceEEEeecC--HHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCCHHHHHhCCceEEEEccCCEEEEEcCCHHHH
Confidence 44555555443 45555566555544 46689888888877654321 1 124566666
Q ss_pred HHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc
Q 001973 110 VKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~ 188 (988)
++.+++.... +. ....++.|+|.|-++.+++..|++.| .+|+++||+.++.++|.+.
T Consensus 112 ~~~L~~~~~~--------~~--------------~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 112 LRALKEFGLP--------VD--------------VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred HHHHHhcCCC--------cc--------------cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 5555542110 00 01248999999999999999999999 5799999999999888754
Q ss_pred ----CC-cccCCHHHH--hccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 189 ----GG-LIANSPAEA--AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 189 ----G~-~~~~s~~e~--~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
+. .......+. ..++|+||-++|-.-.-...- .+-. ...++++.++.|+=-.+..|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~-~~~~-~~~l~~~~~v~D~vY~P~~T 232 (283)
T COG0169 170 FGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGD-SPVP-AELLPKGAIVYDVVYNPLET 232 (283)
T ss_pred hhhcccccccccccccccccccCEEEECCCCCCCCCCCC-CCCc-HHhcCcCCEEEEeccCCCCC
Confidence 21 111222221 226899999998765332100 0001 34577889999987665433
No 345
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.91 E-value=0.15 Score=60.91 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=53.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC--CHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN--SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~--s~~e~~~~aDvV~l~vp~~ 213 (988)
.+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+..-+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 589999999999999999999999999999887777767777775532 2345567899999876433
No 346
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.88 E-value=0.11 Score=58.97 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
..+|.|||+|.+|+.+|..|++.|+ +++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3589999999999999999999997 799999885
No 347
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.88 E-value=0.15 Score=60.62 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=49.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~ 209 (988)
++|.|||+|..|.+.|..|.+.|++|+++|..+.....+.+.|+.......+.+.++|+|+.+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 589999999999999999999999999999876655556666776533223345688988864
No 348
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.88 E-value=0.057 Score=57.70 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=52.3
Q ss_pred EEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh--HHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 149 VGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRP--TLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 149 IgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
|.|+|. |.+|..++..|.+.+|+|++.-|++. ..+.+.+.|+.+ .+++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999999999999999864 467788778753 23455678899999999884
No 349
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.76 E-value=0.13 Score=58.36 Aligned_cols=113 Identities=18% Similarity=0.082 Sum_probs=65.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCC----------cccCCHHHHhc--cCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGG----------LIANSPAEAAK--DVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~----------~~~~s~~e~~~--~aDvV~l~vp~ 212 (988)
..||.|||+|.+|+.+|.+|++.|. +++++|.+.-....|..+-. ..+....+.++ ..++-+.....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 3589999999999999999999998 89999998644444433211 11111112222 23443444332
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcc
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv 268 (988)
....+. +.+.+..-++||+++.. +.+...+.+.... .+..++.+.+
T Consensus 104 ~~~~~~-------~~~~~~~~DlVid~~Dn-~~~r~~ln~~~~~--~~iP~i~~~~ 149 (339)
T PRK07688 104 DVTAEE-------LEELVTGVDLIIDATDN-FETRFIVNDAAQK--YGIPWIYGAC 149 (339)
T ss_pred cCCHHH-------HHHHHcCCCEEEEcCCC-HHHHHHHHHHHHH--hCCCEEEEee
Confidence 111111 12223456888888765 5555566666555 4566665543
No 350
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.75 E-value=0.043 Score=61.77 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCC---eEEEEeCChhHHHH--HHhcCCcccCCHHHH-hccCcEEEEEcCChHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNF---TVIGYDVYRPTLTK--FQNVGGLIANSPAEA-AKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~--l~~~G~~~~~s~~e~-~~~aDvV~l~vp~~~~~~ 217 (988)
..++|+|||+ |+.|..+.+.|.++.| ++..+..+.+.-+. +......+. ++++. ..++|++|+|+|.....+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~ 81 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASAA 81 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHHH
Confidence 4579999998 9999999999999544 45555322211111 111112222 33333 368999999999875333
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+. ..+ ...|..|||+|+.
T Consensus 82 -~~---~~~---~~~g~~VIDlS~~ 99 (336)
T PRK08040 82 -YA---EEA---TNAGCLVIDSSGL 99 (336)
T ss_pred -HH---HHH---HHCCCEEEECChH
Confidence 22 122 2468999999964
No 351
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.75 E-value=0.11 Score=60.44 Aligned_cols=111 Identities=17% Similarity=0.113 Sum_probs=67.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH----HHHHHhcCCcccC--CHHHHhccCcEEEEEcCCh---HHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT----LTKFQNVGGLIAN--SPAEAAKDVGVLVIMVTNE---AQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~G~~~~~--s~~e~~~~aDvV~l~vp~~---~~~ 216 (988)
.+||.|+|+|.-|.++++.|.+.|++|+++|.++.. ...+...++.+.. .+.+...++|+|+.+-.-+ ..+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 579999999999999999999999999999977655 2233344544322 1225567889998764322 223
Q ss_pred HHHHc-cc-----cchhhhC-CCCCEEEecCC-CCHHHHHHHHHHHHh
Q 001973 217 ESVLY-GD-----LGAVSAL-SSGASIILSST-VSPGFVSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~-~~-----~~i~~~l-~~g~ivId~st-~~p~~~~~l~~~l~~ 256 (988)
+.... |. -++.-.. .+..+|..+.| ++..++.-++..+..
T Consensus 87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~ 134 (448)
T COG0771 87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKA 134 (448)
T ss_pred HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHh
Confidence 33321 11 1112222 13335555544 444555556666665
No 352
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.72 E-value=0.056 Score=60.92 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=56.0
Q ss_pred CCeEEEEcc-chHHHHHHHHHHh-CCCe---EEEEeCC--hhHHHHHHhcCCccc-CCHHHHhccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLR-SNFT---VIGYDVY--RPTLTKFQNVGGLIA-NSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~l~~~G~~~~-~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
.+||||||. |+.|..|.+.|.+ ..++ +..+.-. ..+.-.+......+. .++ +...++|++|+|+|+... +
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~-~~~~~~Divf~a~~~~~s-~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKI-NSFEGVDIAFFSAGGEVS-R 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCH-HHhcCCCEEEECCChHHH-H
Confidence 469999997 9999999999995 5666 5555322 222111211122222 133 345789999999998753 3
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.+. .. ....|..|||.|+.
T Consensus 83 ~~~---~~---~~~~G~~VID~Ss~ 101 (347)
T PRK06728 83 QFV---NQ---AVSSGAIVIDNTSE 101 (347)
T ss_pred HHH---HH---HHHCCCEEEECchh
Confidence 332 11 23468999999975
No 353
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.71 E-value=6.7 Score=43.09 Aligned_cols=266 Identities=17% Similarity=0.153 Sum_probs=147.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHh---cCC---------------------cccCCHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQN---VGG---------------------LIANSPAEA 199 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~G~---------------------~~~~s~~e~ 199 (988)
++.++-++|+|...--+|.-|..+| .++-.++|-.-+-+.+.+ .+. .+..+++++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 4568999999999999999999988 578888875544444332 211 134578888
Q ss_pred hccCcEEEEEcCChHHHHHHHccccch-hhhCCCC-CEEEecCCCCHH-HHHHHHHHHHhcCCCceEecCcccCCccccc
Q 001973 200 AKDVGVLVIMVTNEAQAESVLYGDLGA-VSALSSG-ASIILSSTVSPG-FVSQLERRLQFEGKDLKLVDAPVSGGVKRAS 276 (988)
Q Consensus 200 ~~~aDvV~l~vp~~~~~~~vl~~~~~i-~~~l~~g-~ivId~st~~p~-~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~ 276 (988)
..+-+.+++|||.+. -.+|+ +++ .+.|+.= ++|...+|.... ..... ....+.++.+++-..--+.....
T Consensus 83 ~~dwqtlilav~aDa-Y~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~---mnk~~~daeViS~SsY~~dTk~i 155 (431)
T COG4408 83 VGDWQTLILAVPADA-YYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNL---MNKAGRDAEVISLSSYYADTKYI 155 (431)
T ss_pred hchhheEEEEeecHH-HHHHH---hcCCHhHhccccEEEEecccccccHHHHHH---HhhhCCCceEEEeehhcccceee
Confidence 888999999999876 44454 222 1223222 333333333322 22222 22223444444322111111100
Q ss_pred CCC-----------eEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH-----------------------
Q 001973 277 MGE-----------LTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK----------------------- 319 (988)
Q Consensus 277 ~g~-----------l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K----------------------- 319 (988)
..+ -.+..| ++....+.+..+++..|-++.. +..+-.++...
T Consensus 156 d~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~-~esp~~AEtrnit~YVHpPlflndfsL~aif~~~ 234 (431)
T COG4408 156 DAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEP-CESPLAAETRNITLYVHPPLFLNDFSLQAIFYPE 234 (431)
T ss_pred cccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEE-cCChhhhhhcccceeecCcchhhhhHHHHHhCCc
Confidence 000 113343 3455667788888877655544 23332222211
Q ss_pred --------H-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC---CCcccc----cccc--c--------
Q 001973 320 --------M-----ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG---GSSWMF----ENRV--P-------- 369 (988)
Q Consensus 320 --------l-----~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~---~~s~~~----~~~~--~-------- 369 (988)
+ +...+..-+...+.|.+++..+.|+.+-.+++.++... .-+... +++. +
T Consensus 235 ~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlL 314 (431)
T COG4408 235 QRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLL 314 (431)
T ss_pred CCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHH
Confidence 1 11223334566789999999999999888888777642 001000 1100 0
Q ss_pred -----cccCCCCC------CC--c---------------------hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 370 -----HMLDNDYT------PY--S---------------------ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 370 -----~~~~~~~~------~~--~---------------------~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
.++-.-|+ .. | .++. ..-+..++.+|.-.++++|..+.....|+.
T Consensus 315 fVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~ED-y~kla~iq~la~~l~v~~Pt~dq~lt~ye~ 393 (431)
T COG4408 315 FVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLED-YYKLATIQLLAGALDVVMPTADQLLTRYEQ 393 (431)
T ss_pred HHHHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 00000010 00 1 1111 123457789999999999999999999999
Q ss_pred HHHc
Q 001973 416 GSAA 419 (988)
Q Consensus 416 a~~~ 419 (988)
+.++
T Consensus 394 a~k~ 397 (431)
T COG4408 394 ALKA 397 (431)
T ss_pred HHHH
Confidence 8765
No 354
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.71 E-value=0.062 Score=60.91 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCe---EEEE--eCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFT---VIGY--DVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
.+||+||| .|+.|..+.+.|.+.+|. +... .|+..+.-........+.+...+.++++|+||+|+|+....+-+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~~ 86 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKFG 86 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHHH
Confidence 46999997 599999999999998874 3333 23332221111111222222234558899999999987643332
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
- . ....|..|||.|+.
T Consensus 87 ~----~---~~~~g~~VIDlS~~ 102 (344)
T PLN02383 87 P----I---AVDKGAVVVDNSSA 102 (344)
T ss_pred H----H---HHhCCCEEEECCch
Confidence 1 1 22468999999974
No 355
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.68 E-value=0.11 Score=49.07 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHhC----CCe-EEEEeCC--hhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHHccc
Q 001973 153 GLGAMGFGMATHLLRS----NFT-VIGYDVY--RPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 153 G~G~mG~~lA~~L~~~----G~~-V~v~dr~--~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|+|.||+.++..|.+. +++ +.++||+ ......-...+...++++.++++ ..|+|+-|.+. ..+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence 8999999999999987 455 5556888 11111112234567889999988 89999999655 4344443
Q ss_pred cchhhhCCCCCEEEecCCCCH---HHHHHHHHHHHh
Q 001973 224 LGAVSALSSGASIILSSTVSP---GFVSQLERRLQF 256 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p---~~~~~l~~~l~~ 256 (988)
.+.+..|.-||..|...- ....++.+...+
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 345567888887764322 344455444444
No 356
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.078 Score=57.73 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=60.6
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++.|||-+ ..|.++|..|...|..|++++++. .++.+.+++||+||.+++.+.-+.
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~------- 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFIT------- 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccC-------
Confidence 4799999999 999999999999999999998653 356778899999999998654221
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 211 --~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 211 --PDMVKPGATVIDVGIN 226 (279)
T ss_pred --HHHcCCCcEEEEeecc
Confidence 2346899999998865
No 357
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.63 E-value=0.14 Score=57.30 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc--c---CCHHHHh-ccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI--A---NSPAEAA-KDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~--~---~s~~e~~-~~aDvV~l~vp~~~~~~~v 219 (988)
-.+|+|+|+|-+|..-.+.....|.+|+++||++++.+.+.+.|+.. . .+..+.+ +..|+++.+++ +.++...
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 35899999998888777777779999999999999999999888642 1 1122222 23888888888 6655554
Q ss_pred H
Q 001973 220 L 220 (988)
Q Consensus 220 l 220 (988)
+
T Consensus 246 l 246 (339)
T COG1064 246 L 246 (339)
T ss_pred H
Confidence 4
No 358
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.62 E-value=0.17 Score=49.44 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=59.7
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|+|-+ ..|.+++..|.+.|..|+..+++. .++++.+++||+|+.+++.+.. + +
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~----i---~ 86 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK----V---P 86 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc----c---C
Confidence 4689999865 579999999999999999998642 3677889999999999998642 2 1
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
.+++++|.+++|.+...
T Consensus 87 --~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 --TEWIKPGATVINCSPTK 103 (140)
T ss_pred --HHHcCCCCEEEEcCCCc
Confidence 34578999999887654
No 359
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=94.56 E-value=0.0074 Score=59.71 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=70.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHhc----CCCccccccccc--cccCCCCCC-----
Q 001973 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTR-VLFNIITDS----GGSSWMFENRVP--HMLDNDYTP----- 378 (988)
Q Consensus 311 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~-~~~~~l~~~----~~~s~~~~~~~~--~~~~~~~~~----- 378 (988)
..|....+++..|...+++..++.|+.+++++.|.+++ ++++...-+ ++.|..++|+.- .+..++...
T Consensus 19 a~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~ 98 (149)
T PF07479_consen 19 AAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEK 98 (149)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHH
Confidence 56677778889999999999999999999999999988 776543332 233333344321 122221100
Q ss_pred ---CchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001973 379 ---YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 379 ---~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
....-+...-...+.++++++++++|++.++++++..-
T Consensus 99 ~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~~ 139 (149)
T PF07479_consen 99 EMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYEN 139 (149)
T ss_dssp HHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS-
T ss_pred hhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcCc
Confidence 01122344556788899999999999999999998643
No 360
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.53 E-value=0.19 Score=59.84 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=49.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-HhcCCcccC--CHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIAN--SPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~G~~~~~--s~~e~~~~aDvV~l~v 210 (988)
++|.|+|+|..|.++|..|.+.|++|+++|+++....++ .+.|+.+.. ...+-+.++|+||.+-
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 82 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP 82 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence 589999999999999999999999999999987665543 444766532 2334466889888763
No 361
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.51 E-value=0.092 Score=58.65 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=47.4
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCChhHH--HHHHhcC--Cccc----C-CHHHHhccCcEEEEEcCCh
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYRPTL--TKFQNVG--GLIA----N-SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~G--~~~~----~-s~~e~~~~aDvV~l~vp~~ 213 (988)
||+|||+ |.+|..+|..|+..++ ++.++|+++... -+|...- ..+. + ++.+.++++|+|+++...+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 6999999 9999999999998885 799999987211 1222210 1111 1 3467899999999988654
No 362
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.43 E-value=0.045 Score=62.07 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=56.9
Q ss_pred eEEEEc-cchHHHHHHHHHHhCCCeE---EEEeCChhHHHHHHhcCC--cccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 148 RVGFIG-LGAMGFGMATHLLRSNFTV---IGYDVYRPTLTKFQNVGG--LIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~G~--~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
||+||| .|+.|..+.+.|.+++|++ .++.++.+.-+.+.-.|. .+.+-..+.++++|++|+|+|.....+.+-
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~- 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAP- 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHH-
Confidence 689999 8999999999999988873 344444333223322221 222212344589999999999876433321
Q ss_pred cccchhhhCCCCCEEEecCCC
Q 001973 222 GDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~ 242 (988)
.++..|..|||.|+.
T Consensus 80 ------~~~~~G~~VID~ss~ 94 (339)
T TIGR01296 80 ------KAAKCGAIVIDNTSA 94 (339)
T ss_pred ------HHHHCCCEEEECCHH
Confidence 233467899999874
No 363
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.42 E-value=0.11 Score=53.23 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHH-HhcCCccc--CC----HHHHhccCcEEEEEcCChHH-H
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIA--NS----PAEAAKDVGVLVIMVTNEAQ-A 216 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~G~~~~--~s----~~e~~~~aDvV~l~vp~~~~-~ 216 (988)
.++|.|||-+. +|.++|..|.+.|..|+++|.+.-....= .......+ .+ +.+.+++||+||.+++.+.. +
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i 141 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKV 141 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCcc
Confidence 35899999775 79999999999999999998654322000 00001111 12 67889999999999998763 2
Q ss_pred HHHHccccchhhhCCCCCEEEecCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
. ...+++|.+|||.++.
T Consensus 142 ~---------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 142 P---------TELLKDGAICINFASI 158 (197)
T ss_pred C---------HHHcCCCcEEEEcCCC
Confidence 2 2456799999999866
No 364
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.32 E-value=0.14 Score=53.94 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
..+|.|||+|.+|+.++.+|++.|. +++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3589999999999999999999997 599999884
No 365
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.14 E-value=0.11 Score=59.13 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=55.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC-CeEEEE-eCChhHHHHHHhc-------CC-------cccCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN-FTVIGY-DVYRPTLTKFQNV-------GG-------LIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~-------G~-------~~~~s~~e~~~~aDvV~l~ 209 (988)
+||+|+|+ |.||..+++.|.++. +++... +.+++.-+.+... +. .+.+...+...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 48999995 999999999998877 576665 5544322222110 00 1111122345789999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+|.....+.+. . ....|..+||.|+.
T Consensus 81 ~p~~~s~~~~~----~---~~~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEVAEEVEP----K---LAEAGKPVFSNASN 106 (341)
T ss_pred CCHHHHHHHHH----H---HHHCCCEEEECChh
Confidence 99875433321 1 12357888998865
No 366
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.12 E-value=0.35 Score=53.50 Aligned_cols=89 Identities=22% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
-+++.|.|.|..|..+|.+|...|-+|.|++.+|-++-+..-.|..+. ..++++..+|++++++.+.. |+. .+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd----Vi~--~e 281 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD----VIR--KE 281 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC----ccC--HH
Confidence 468999999999999999999999999999999998888777788764 57788999999999998744 332 23
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
-...++.|.++.+...
T Consensus 282 h~~~MkDgaIl~N~GH 297 (420)
T COG0499 282 HFEKMKDGAILANAGH 297 (420)
T ss_pred HHHhccCCeEEecccc
Confidence 3455778888888774
No 367
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.27 Score=52.38 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+..++|.|+|. |.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 33468999985 99999999999999999999999988766553
No 368
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.09 E-value=0.16 Score=55.36 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+. +|.++|..|.+.|..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~------ 215 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVK------ 215 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC------
Confidence 347999999764 7999999999999999988642 3467888999999999999876322
Q ss_pred cchhhhCCCCCEEEecCCCC
Q 001973 224 LGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~ 243 (988)
...+++|.+|||.++..
T Consensus 216 ---~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 216 ---KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred ---HHHcCCCCEEEEccCcc
Confidence 24577999999988763
No 369
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.98 E-value=0.33 Score=61.90 Aligned_cols=114 Identities=21% Similarity=0.225 Sum_probs=69.4
Q ss_pred CCCeEEEEccchHHHHH-HHHHHhCCCeEEEEeCCh-hHHHHHHhcCCcccC-CHHHHhccCcEEEEEcCCh---HHHHH
Q 001973 145 SVTRVGFIGLGAMGFGM-ATHLLRSNFTVIGYDVYR-PTLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTNE---AQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~l-A~~L~~~G~~V~v~dr~~-~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~~---~~~~~ 218 (988)
++++|.|||+|..|.+. |+.|.+.|++|+++|.++ ...+.|.+.|+.+.. ...+.+.++|+|+.+-.-+ ..++.
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~ 82 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLS 82 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHH
Confidence 34579999999999997 999999999999999754 345567777876532 2335567889888654222 22322
Q ss_pred HHc------cccchhhhCCCC-CEEEecCCCCH-HHHHHHHHHHHhcC
Q 001973 219 VLY------GDLGAVSALSSG-ASIILSSTVSP-GFVSQLERRLQFEG 258 (988)
Q Consensus 219 vl~------~~~~i~~~l~~g-~ivId~st~~p-~~~~~l~~~l~~~~ 258 (988)
... +.-+++..+.++ .+|..+.|..- .++.-++..+...+
T Consensus 83 a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 83 AKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 211 011222222222 45555555544 45555566676643
No 370
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.97 E-value=0.17 Score=56.14 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=34.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCe-EEEEeCCh---hHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYR---PTLTKFQ 186 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~ 186 (988)
+++.|+|.|-+|.+++..|++.|.+ |+++||++ ++.+++.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHH
Confidence 4799999999999999999999986 99999997 5665544
No 371
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.97 E-value=0.18 Score=56.01 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=75.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHH---HHHHHcc-
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQ---AESVLYG- 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~---~~~vl~~- 222 (988)
.+|+|||.-.=-..+++.|.+.|++|.++..+.+. ....|+..+++.+++++++|+|+..+|...+ ++..+..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 58999999999999999999999999998754322 1234888888889999999999999885321 1111100
Q ss_pred ----ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 223 ----DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 223 ----~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
+.+.+..++++.+++ .+...|... + .+.+ +|+.+++.
T Consensus 80 ~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~---~~~~--~gi~~~~~ 120 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIF-SGIANPYLK-E---LAKE--TNRKLVEL 120 (296)
T ss_pred CCcchHHHHHhcCCCCEEE-EecCCHHHH-H---HHHH--CCCeEEEE
Confidence 134567788997555 355555533 2 2333 56666644
No 372
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.94 E-value=0.22 Score=55.07 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=53.2
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.||+|+| .|+.|..+.+.|..+.+ ++... +.++. .. ..+.++..+++|++|+|+|+....+-+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l--~s~~~-------~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~---- 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSI--APDRR-------KD-AAERAKLLNAADVAILCLPDDAAREAVS---- 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEE--ecccc-------cC-cCCHhHhhcCCCEEEECCCHHHHHHHHH----
Confidence 4899997 59999999999998753 33332 22211 11 2245566688999999999876443332
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
. ....|..|||+|+.
T Consensus 68 ~---~~~~g~~VIDlSad 82 (310)
T TIGR01851 68 L---VDNPNTCIIDASTA 82 (310)
T ss_pred H---HHhCCCEEEECChH
Confidence 1 22468899999964
No 373
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.93 E-value=0.071 Score=51.93 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=62.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.=....+... |...+....+.+. ..++=+.+.+....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 489999999999999999999997 799999875333332221 2111112222222 11222333333221
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCccc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVS 269 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~ 269 (988)
.+.. ..+ +..-++||+++.. +..-..+.+.+.+ .+..++++-+.
T Consensus 83 ~~~~----~~~---~~~~d~vi~~~d~-~~~~~~l~~~~~~--~~~p~i~~~~~ 126 (135)
T PF00899_consen 83 EENI----EEL---LKDYDIVIDCVDS-LAARLLLNEICRE--YGIPFIDAGVN 126 (135)
T ss_dssp HHHH----HHH---HHTSSEEEEESSS-HHHHHHHHHHHHH--TT-EEEEEEEE
T ss_pred cccc----ccc---ccCCCEEEEecCC-HHHHHHHHHHHHH--cCCCEEEEEee
Confidence 1111 111 2244678877655 5555667776666 46677766544
No 374
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.92 E-value=0.52 Score=56.65 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh--HHHHHHhc--CCccc--CCHHHHhccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP--TLTKFQNV--GGLIA--NSPAEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~--G~~~~--~s~~e~~~~aDvV~l~ 209 (988)
.++|.|+|+|..|.++|+.|.+.|++|+++|.+.. ..+.|.+. |+.+. ....+.+.++|+|+.+
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 35899999999999999999999999999997542 33456555 44332 1234556789999987
No 375
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=93.89 E-value=0.45 Score=50.88 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCC-Ce-EEEEeCChhHH-----HHH---HhcCCcccCCHHHHhccCcEEEEEcCChH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSN-FT-VIGYDVYRPTL-----TKF---QNVGGLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~-----~~l---~~~G~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
+|||+|+|+ |.||..+.+.+.+.. ++ +-.++|.++.. .++ ...|..+.+++.....++|++|=......
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~ 81 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPEA 81 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCchh
Confidence 479999999 999999999998876 55 55568776432 112 22356677778888889999996654433
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRL 254 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l 254 (988)
+...+ .+... .+-.+||-++.-++...+.+.+..
T Consensus 82 -~~~~l----~~~~~-~~~~lVIGTTGf~~e~~~~l~~~a 115 (266)
T COG0289 82 -TLENL----EFALE-HGKPLVIGTTGFTEEQLEKLREAA 115 (266)
T ss_pred -hHHHH----HHHHH-cCCCeEEECCCCCHHHHHHHHHHH
Confidence 33333 11111 123456655666666665655544
No 376
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.88 E-value=0.47 Score=56.73 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhcCCcccC-CHHHHhccCcEEEEEcC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-----TLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp 211 (988)
.++|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+.+.. ...+....+|+|+++..
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~G 87 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPG 87 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCC
Confidence 35899999999999999999999999999996642 23456666876532 11123456899998863
No 377
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.88 E-value=0.12 Score=58.14 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=46.4
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChhH--HH----HHHhc------CCcccCCHHHHhccCcEEE
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRPT--LT----KFQNV------GGLIANSPAEAAKDVGVLV 207 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~------G~~~~~s~~e~~~~aDvV~ 207 (988)
||+|||+ |.+|+.+|..|+..|. ++.++|+++.. .+ ++... +....++..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999998553 69999996542 21 11111 1222335567889999999
Q ss_pred EEcCCh
Q 001973 208 IMVTNE 213 (988)
Q Consensus 208 l~vp~~ 213 (988)
++-..+
T Consensus 81 itAG~~ 86 (324)
T TIGR01758 81 LVGAFP 86 (324)
T ss_pred EcCCCC
Confidence 987654
No 378
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.74 E-value=0.17 Score=56.37 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=46.9
Q ss_pred EEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc------CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 151 FIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV------GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 151 iIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~------G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|.+|..+|..|+..+. ++.++|++.++++. |... ...+..+.-+.+++||+|+++...+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~ 75 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAP 75 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCC
Confidence 69999999999999998885 79999998765543 2221 1233444557789999999987653
No 379
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.71 E-value=0.33 Score=57.52 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=67.0
Q ss_pred eEEEEccchHHHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhcCCcccC-CHHHHhccCcEEEEEcCC---hHHHHHHHc
Q 001973 148 RVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTN---EAQAESVLY 221 (988)
Q Consensus 148 kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~---~~~~~~vl~ 221 (988)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.|.+.|+.+.. ...+.++++|+|+.+-.- ...++....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4889999999998 99999999999999997653 34557677876532 223456679988876422 222333211
Q ss_pred ------cccchh-hhCCCCCEEEecCC-CCHHHHHHHHHHHHhc
Q 001973 222 ------GDLGAV-SALSSGASIILSST-VSPGFVSQLERRLQFE 257 (988)
Q Consensus 222 ------~~~~i~-~~l~~g~ivId~st-~~p~~~~~l~~~l~~~ 257 (988)
+.-+++ ..+.+..+|..+.| ++..++.-++..+...
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 124 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA 124 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc
Confidence 111222 22223345555544 4445555556666653
No 380
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.69 E-value=0.21 Score=54.60 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.++|..|.+.|..|+++... +.++++..++||+|+.+++.+..+.
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~------ 213 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLIT------ 213 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC------
Confidence 34799999975 58999999999999999988643 3467788899999999999876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.++.
T Consensus 214 ---~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 ---PEMVRPGAVVVDVGIN 229 (287)
T ss_pred ---HHHcCCCCEEEEccCc
Confidence 2457899999998865
No 381
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.36 Score=51.88 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 143 SNSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 143 ~~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+.+.+++-|.|. |.+|..+++.|++.|++|++.+|+++..+.+.+. ..+.-.....+..-+.+..+++.++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~- 74 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQ-------IVADGGTAIAVQVDVSDPDSAKAMA- 74 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHH-
Confidence 334568999987 9999999999999999999999998766554321 0000001122223334555555555
Q ss_pred cccchhhhCCCCCEEEecCCC
Q 001973 222 GDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+...+=.++|++.+.
T Consensus 75 --~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 75 --DATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred --HHHHHHhCCCCEEEECCCC
Confidence 3344444444677776654
No 382
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.63 E-value=0.36 Score=51.48 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
++++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 3468999985 9999999999999999999999998776544
No 383
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.38 Score=51.43 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+++++-|.|. |.+|..+++.|+++|++|++.+|+++..+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3457888885 99999999999999999999999987766544
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.61 E-value=0.17 Score=46.82 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=47.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-cCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-ANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
+..+|.|||.|.+|..=++.|.+.|.+|+++..+.+..+ ..++. ....++.++++++||.+.+++..-+.+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i 77 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNEAI 77 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHHHH
Confidence 346899999999999999999999999999998861111 22221 122234566778888777776533333
No 385
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.58 E-value=0.22 Score=54.42 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=60.5
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+ .+|.++|..|.+.|..|+++... +.++.+..++||+|+.+++.+..+.
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~------ 214 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIG------ 214 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccC------
Confidence 34799999976 57999999999999999988532 3467788899999999999877322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 215 ---~~~vk~GavVIDvGin 230 (282)
T PRK14169 215 ---ADAVKPGAVVIDVGIS 230 (282)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2357899999998865
No 386
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.50 E-value=0.23 Score=54.62 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.+++..|.++|..|+++... +.++.+.+++||+|+++++.+..+.
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~------- 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIG------- 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC-------
Confidence 4799999976 57999999999999999998532 3467788899999999999876322
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
..++++|.+|||.+...
T Consensus 217 --~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 217 --AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred --HHHcCCCCEEEEecccc
Confidence 34578999999988653
No 387
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.48 E-value=0.23 Score=54.22 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.++|..|.+.|..|++++.. +.++.+..++||+|+.+++.+..+.
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~------ 215 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNLLR------ 215 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC------
Confidence 34799999976 57999999999999999988753 3467788899999999999877332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 216 ---~~~vk~GavVIDvGin 231 (282)
T PRK14166 216 ---SDMVKEGVIVVDVGIN 231 (282)
T ss_pred ---HHHcCCCCEEEEeccc
Confidence 2357799999998865
No 388
>PRK08223 hypothetical protein; Validated
Probab=93.44 E-value=0.39 Score=52.66 Aligned_cols=116 Identities=17% Similarity=0.059 Sum_probs=65.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~ 214 (988)
..+|.|||+|-+|+.++.+|+..|. +++++|.+.=....++.+ |-..+....+.+. ..++=+.+.+..-
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l 106 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGI 106 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 3589999999999999999999995 799999876544444433 2111222222222 2233333333211
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
.- +.+...+..-++|||++... ..+-..+.+.... .++.++.+.+.+
T Consensus 107 ~~-------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~--~~iP~V~~~~~g 154 (287)
T PRK08223 107 GK-------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ--RGIPALTAAPLG 154 (287)
T ss_pred Cc-------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--cCCCEEEEeccC
Confidence 10 11222234557888888653 2444445555544 456666654433
No 389
>PRK08328 hypothetical protein; Provisional
Probab=93.43 E-value=0.38 Score=51.48 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=67.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccC---C--HHHHh----c--cCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIAN---S--PAEAA----K--DVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~---s--~~e~~----~--~aDvV~l~vp~~~ 214 (988)
.+|.|||+|..|+.++.+|++.|. +++++|.+.-....+..+-....+ . -.+++ + ..++.+.+.+..-
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~ 107 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL 107 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 589999999999999999999995 699999886665555543110000 0 11111 1 3566666544321
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
..+ .+...+.+-++|+|+.-. +.+-..+.+...+ .++.++.+.+.|
T Consensus 108 ~~~-------~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~--~~ip~i~g~~~g 153 (231)
T PRK08328 108 SEE-------NIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK--KGIPLVHGAVEG 153 (231)
T ss_pred CHH-------HHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH--cCCCEEEEeecc
Confidence 111 112223456889988766 5554455555544 466677655443
No 390
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.41 E-value=0.46 Score=56.31 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=66.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh--HHHHHHh--cCCcccC--CHHHHhccCcEEEEEcCCh---HHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP--TLTKFQN--VGGLIAN--SPAEAAKDVGVLVIMVTNE---AQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~--~G~~~~~--s~~e~~~~aDvV~l~vp~~---~~~ 216 (988)
.-.|.|||+|..|.++|+.|.+.|++|+++|..+. ..++|.+ .|+.+.. ...+.+.++|+|+.+-.-+ ..+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 35799999999999999999999999999997643 3344655 3665532 2344567889887764221 223
Q ss_pred HHHHc------cccchhhhCCCCCEEEecCCCCHHH-HHHHHHHHHh
Q 001973 217 ESVLY------GDLGAVSALSSGASIILSSTVSPGF-VSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~------~~~~i~~~l~~g~ivId~st~~p~~-~~~l~~~l~~ 256 (988)
..... ..-+++..+.+..+|..+.|..-.| +.-++..+..
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 22211 0012222222445555555555554 4455666655
No 391
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.37 E-value=0.24 Score=54.09 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=59.9
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.++|..|.++|..|++++.. +.++.+..++||+|+.+++.+..+.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------------T~dl~~~~k~ADIvIsAvGkp~~i~------- 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNFIT------- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHhhhcCEEEEccCCcCcCC-------
Confidence 4699999976 57999999999999999998643 3467777899999999999876322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 217 --~~~vk~gavVIDvGin 232 (282)
T PRK14180 217 --ADMVKEGAVVIDVGIN 232 (282)
T ss_pred --HHHcCCCcEEEEeccc
Confidence 2457899999998764
No 392
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.33 E-value=0.061 Score=49.08 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=50.9
Q ss_pred CeEEEEccchHHHHHHHHHH-hCCCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhcc--CcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLL-RSNFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAKD--VGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~-~~G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~--aDvV~l~vp~~~~ 215 (988)
.+|.++|+|..|.+++.++. ..|+. +.++|.++++..+-. .|+.+..+..++.+. .|+-++++|....
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~a 75 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEAA 75 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence 58999999999999986554 46765 677899998754211 266677788888776 9999999998663
No 393
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.28 Score=53.63 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=61.1
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.+++..|.+.|..|++++.. +.++.+..++||+|+.+++.+..+.
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~------- 217 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK------- 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC-------
Confidence 4699999976 57999999999999999998743 3467788899999999999876322
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
...+++|.+|||.++..
T Consensus 218 --~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 218 --ADWISEGAVLLDAGYNP 234 (284)
T ss_pred --HHHcCCCCEEEEecCcc
Confidence 34578999999988753
No 394
>KOG4153 consensus Fructose 1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=93.31 E-value=0.05 Score=56.68 Aligned_cols=78 Identities=6% Similarity=-0.093 Sum_probs=35.3
Q ss_pred CCCcEEecCCCCCChhHHHHHHHHhccCcccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEecc
Q 001973 891 PGVPYVVFPGNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRS 969 (988)
Q Consensus 891 ~gl~ivtK~G~fG~~~~l~~~~~~l~~~~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~ 969 (988)
++.+...+.|+.|..-+|-.+..... ....-.+++++..+....|++++||+++++...+..+++++..+|.|+|.++
T Consensus 14 g~~v~~lFtya~eh~fAipainvtsS-stA~aaleaar~~~spiilqtsngga~~faGk~~snegq~asi~gaIaaaHy 91 (358)
T KOG4153|consen 14 GEDVHNLFTYAKEHKFAIPAINVTSS-STAVAALEAARDSKSPIILQTSNGGAAYFAGKGISNEGQNASIKGAIAAAHY 91 (358)
T ss_pred CCcceEeeccccccccccceeeeech-HHHHHHHHHHHhccCCceEEecCCceeEeccchhhhhhhhccccchhhhhcc
Confidence 34455555555555444433222111 0011133444444444455555555555555555555555555555555444
No 395
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.29 E-value=0.36 Score=55.15 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=60.9
Q ss_pred eEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-cCCcccCCHH---------HHh--ccCcEEEEEcCChH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQN-VGGLIANSPA---------EAA--KDVGVLVIMVTNEA 214 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~-~G~~~~~s~~---------e~~--~~aDvV~l~vp~~~ 214 (988)
++.|+|+|.+|...+..+...| .+|++.|+++++.+..++ .|.....+.. +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 7999999999999988888888 578889999999998887 4544322221 111 24788888888665
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++..+ ..++++-.++..+..
T Consensus 251 ~~~~ai-------~~~r~gG~v~~vGv~ 271 (350)
T COG1063 251 ALDQAL-------EALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHhcCCCEEEEEecc
Confidence 444433 445555555555544
No 396
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.20 E-value=0.38 Score=51.75 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=67.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.-....|..+ |...+....+.+. ..++-+.+.+..-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~ 104 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLD 104 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCC
Confidence 589999999999999999999995 799999886554444432 2111112222221 23444444432211
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
-+ .+.+.+..-++|||++.. +.+-..+.+...+ .++.++.+.+.+
T Consensus 105 ~~-------~~~~~~~~~DlVvd~~D~-~~~r~~ln~~~~~--~~ip~v~~~~~g 149 (240)
T TIGR02355 105 DA-------ELAALIAEHDIVVDCTDN-VEVRNQLNRQCFA--AKVPLVSGAAIR 149 (240)
T ss_pred HH-------HHHHHhhcCCEEEEcCCC-HHHHHHHHHHHHH--cCCCEEEEEecc
Confidence 11 122234456788888765 5555566666655 467777665444
No 397
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.18 E-value=0.54 Score=50.86 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=55.7
Q ss_pred hcCCCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 141 AKSNSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 141 m~~~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
||+...++|-|.|. |.+|..+++.|+++|++|++.+|+.+..+++.+.-. .....+-.-+.++..++.+
T Consensus 1 ~~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~ 70 (257)
T PRK07067 1 MMRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG----------PAAIAVSLDVTRQDSIDRI 70 (257)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC----------CceEEEEccCCCHHHHHHH
Confidence 33334457888874 999999999999999999999999887766544210 0112222224455556555
Q ss_pred HccccchhhhCCCCCEEEecCC
Q 001973 220 LYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st 241 (988)
+ +.+.+...+=+.+|++..
T Consensus 71 ~---~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 71 V---AAAVERFGGIDILFNNAA 89 (257)
T ss_pred H---HHHHHHcCCCCEEEECCC
Confidence 5 344444444466776654
No 398
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.17 E-value=0.28 Score=54.04 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=61.0
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+. +|.++|..|.+.|..|++++.. +.++++.++++|+|+.++..+..+.
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~------ 225 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIK------ 225 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC------
Confidence 347999999764 7999999999999999999643 3467888999999999998764222
Q ss_pred cchhhhCCCCCEEEecCCCC
Q 001973 224 LGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~ 243 (988)
..++++|.+|||.+...
T Consensus 226 ---~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 226 ---GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred ---HHHcCCCCEEEEeeccc
Confidence 34578999999988653
No 399
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.17 E-value=0.28 Score=53.43 Aligned_cols=75 Identities=24% Similarity=0.221 Sum_probs=60.6
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+|+.+++.+..+.
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~------ 216 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFID------ 216 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC------
Confidence 34799999976 57999999999999999999743 3467888899999999999876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||....
T Consensus 217 ---~~~ik~gavVIDvGin 232 (278)
T PRK14172 217 ---EEYVKEGAIVIDVGTS 232 (278)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2457899999998654
No 400
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.16 E-value=5.3 Score=47.90 Aligned_cols=65 Identities=11% Similarity=-0.074 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
.+++..+.+..++..+|+.++.+.+.+| ++.|-+ ....++|+..+.+.--.+++++..++..+.+
T Consensus 388 Ts~e~~~~a~~~~~~~Gk~pi~v~D~pG------fi~nRi---l~~~~nEA~~ll~eGvas~~dID~a~~~g~G 452 (503)
T TIGR02279 388 NPDSATRKAIYYLQQAGKKVLQIADYPG------LLILRT---VAMLANEAADAVLQGVASAQDIDTAMRLGVN 452 (503)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCccc------HHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 5789999999999999999888633345 233322 3456899999998876789999888776554
No 401
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.13 E-value=0.21 Score=56.12 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=51.7
Q ss_pred CeEEEEccchHHHHHHHHHHhC------C--Ce-EEEEeCChhHH-------HHH---HhcC-C--cccC--CHHHHh-c
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS------N--FT-VIGYDVYRPTL-------TKF---QNVG-G--LIAN--SPAEAA-K 201 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~------G--~~-V~v~dr~~~~~-------~~l---~~~G-~--~~~~--s~~e~~-~ 201 (988)
|||++||+|++|+.+++.|.++ | .+ |.++|++.... +++ .+.| . ...+ +..+.. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 4899999999999999999873 3 44 44557654221 111 1212 1 0112 444443 3
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
++|+++-|.|+...-...+ .-+.+.+..|.-||..+.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNK 117 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANK 117 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCH
Confidence 6789999987532101111 122445667777775553
No 402
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.09 E-value=0.64 Score=51.82 Aligned_cols=137 Identities=21% Similarity=0.318 Sum_probs=73.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhC--------CCeEEE---EeCChhHHHHHHhcC-CcccCCH-----HHHh--ccCcEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS--------NFTVIG---YDVYRPTLTKFQNVG-GLIANSP-----AEAA--KDVGVL 206 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~--------G~~V~v---~dr~~~~~~~l~~~G-~~~~~s~-----~e~~--~~aDvV 206 (988)
.++|+++|+|.+|+.+++.|.++ |.++.+ .||+......+.-.+ ....+++ .+.+ .+.|+|
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVV 82 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEE
Confidence 46999999999999999999875 334333 356554443111111 1223333 3443 355788
Q ss_pred EEEcCC-hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHH---HHHHHHHhcCCCce-EecCcccCCcccccCCCeE
Q 001973 207 VIMVTN-EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVS---QLERRLQFEGKDLK-LVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 207 ~l~vp~-~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~---~l~~~l~~~~~g~~-~ldapv~g~~~~a~~g~l~ 281 (988)
+-+++. ....+. + +.+...+..|+-||. ..+...+. ++.+...+ .|.. +.++.|.||.
T Consensus 83 ve~~~~d~~~~~~-~---~~~~~al~~GkhVVT--aNK~~lA~~~~el~~~A~~--~g~~l~yEAtV~gGi--------- 145 (333)
T COG0460 83 VELVGGDVEPAEP-A---DLYLKALENGKHVVT--ANKALLALHYHELREAAEK--NGVKLLYEATVGGGI--------- 145 (333)
T ss_pred EecCcccCCchhh-H---HHHHHHHHcCCeEEC--CCchHhHhhHHHHHHHHHH--hCCeEEEEeeeccCc---------
Confidence 888776 222332 2 234566777877773 33333332 34444433 2333 3444444432
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEE
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
..++.++..|. +.++..+
T Consensus 146 -------PiI~~lr~~l~--g~~I~~i 163 (333)
T COG0460 146 -------PIIKLLRELLA--GDEILSI 163 (333)
T ss_pred -------chHHHHHhhcc--cCceEEE
Confidence 24566666666 5666554
No 403
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.09 E-value=0.43 Score=51.59 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
..++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 3468889885 99999999999999999999999987765543
No 404
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.08 E-value=0.53 Score=53.42 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=55.1
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|-|.|. |.+|..+++.|++.|++|++.+|++++.+++.+. ..+.-.+..++..=+.+..+++.++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~~g~~~~~v~~Dv~d~~~v~~~~--- 76 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRAAGGEALAVVADVADAEAVQAAA--- 76 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHcCCcEEEEEecCCCHHHHHHHH---
Confidence 3457888875 8999999999999999999999998877655431 1110011122223345556666665
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+.+.+=+++|++...
T Consensus 77 ~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 77 DRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHCCCCCEEEECCCc
Confidence 3444444444677776543
No 405
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.05 E-value=0.6 Score=50.71 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++.+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+.. -....++..-+.++..++.++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~-- 71 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF----------GDHVLVVEGDVTSYADNQRAV-- 71 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHH--
Confidence 34457778875 78999999999999999999999988877665431 011233333445555555555
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+=+++|++.+.
T Consensus 72 -~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 72 -DQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred -HHHHHhcCCCCEEEECCCC
Confidence 3343333334567766553
No 406
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=93.04 E-value=0.13 Score=52.60 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=45.0
Q ss_pred eEEEEccchHHHHHH--HHHHhC----CCeEEEEeCChhHHHHHHh--------cCC----cccCCHHHHhccCcEEEEE
Q 001973 148 RVGFIGLGAMGFGMA--THLLRS----NFTVIGYDVYRPTLTKFQN--------VGG----LIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 148 kIgiIG~G~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~~--------~G~----~~~~s~~e~~~~aDvV~l~ 209 (988)
||+|||.|..-.+.- .-+... +.++..+|+|+++.+.... .|. ..++|..++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 799999998877632 223322 3479999999998875322 232 3588999999999999998
Q ss_pred cCCh
Q 001973 210 VTNE 213 (988)
Q Consensus 210 vp~~ 213 (988)
+--.
T Consensus 81 irvG 84 (183)
T PF02056_consen 81 IRVG 84 (183)
T ss_dssp --TT
T ss_pred eeec
Confidence 8644
No 407
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.03 E-value=0.27 Score=55.69 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=52.9
Q ss_pred CeEEEEccchHHHHHHHHHHh--------CCC--e-EEEEeCCh----------hHHHHHHhcCC---cc-------cCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLR--------SNF--T-VIGYDVYR----------PTLTKFQNVGG---LI-------ANS 195 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~--------~G~--~-V~v~dr~~----------~~~~~l~~~G~---~~-------~~s 195 (988)
++|+|+|+|++|+.+++.|.+ .|. + +.+.|++. ++..+..+.+. .+ ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 699999999999999999887 463 3 33336442 22222222211 01 115
Q ss_pred HHHHh--ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 196 PAEAA--KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 196 ~~e~~--~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+ .++|+|+-+.+... ...++ ...+..|.-||..++.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~-a~~~~------~~al~~G~~VVtanK~ 124 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKN-AHEWH------LEALKEGKSVVTSNKP 124 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHH-HHHHH------HHHHhhCCcEEECCHH
Confidence 66766 47899998886543 44443 3445567777766653
No 408
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=93.01 E-value=0.32 Score=54.63 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=28.6
Q ss_pred EEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHH
Q 001973 149 VGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQ 186 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~ 186 (988)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....+.
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA 40 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRA 40 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHH
Confidence 69999999999999998754 45654 4577777554444
No 409
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.01 E-value=0.24 Score=54.68 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=37.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~ 187 (988)
+++.|+|+|-.|.+++..|++.|. +|+++||+.++.+.+.+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 479999999999999999999995 79999999999988865
No 410
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.96 E-value=0.3 Score=53.60 Aligned_cols=75 Identities=25% Similarity=0.181 Sum_probs=60.7
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+|+.+++.+..+.
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~------ 218 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVK------ 218 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC------
Confidence 34699999976 57999999999999999998743 3467788999999999999876332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||....
T Consensus 219 ---~~~ik~gaiVIDVGin 234 (294)
T PRK14187 219 ---YSWIKKGAIVIDVGIN 234 (294)
T ss_pred ---HHHcCCCCEEEEeccc
Confidence 2356799999998765
No 411
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.93 E-value=0.48 Score=50.62 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKF 185 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l 185 (988)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 61 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL 61 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc
Confidence 3599999999999999999999996 799998775333333
No 412
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=92.92 E-value=0.59 Score=55.22 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=54.2
Q ss_pred CCeEEEEcc----chHHHHHHHHHHhCCCe--EEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIGL----GAMGFGMATHLLRSNFT--VIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG~----G~mG~~lA~~L~~~G~~--V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+|+|||. |.+|..+.++|.+.||+ |+..|...+. -.|.+...++.|+-...|++++++|... +.++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~~-~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAKY-VPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHHH-HHHH
Confidence 358999999 88999999999999984 6555544332 2478888899998888999999999765 4444
Q ss_pred H
Q 001973 220 L 220 (988)
Q Consensus 220 l 220 (988)
+
T Consensus 81 l 81 (447)
T TIGR02717 81 V 81 (447)
T ss_pred H
Confidence 4
No 413
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.90 E-value=0.31 Score=53.34 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.+++..|.+.|..|++++.. +.++.+..++||+|+.++..+..+.
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~------ 217 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLT------ 217 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccC------
Confidence 34799999976 57999999999999999988632 3467788899999999999776332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 218 ---~~~vk~GavVIDvGin 233 (288)
T PRK14171 218 ---AEYFNPESIVIDVGIN 233 (288)
T ss_pred ---HHHcCCCCEEEEeecc
Confidence 2457799999998765
No 414
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.65 Score=50.97 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
+++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+... .....+-.-+.++..+...+ +
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~----------~~~~~~~~D~~d~~~~~~~~---~ 70 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP----------DRALARLLDVTDFDAIDAVV---A 70 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC----------CCeeEEEccCCCHHHHHHHH---H
Confidence 357888875 899999999999999999999999988776654310 11223333445555555555 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
++.+...+=+++|++...
T Consensus 71 ~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 71 DAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 443333334667776543
No 415
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.88 E-value=0.31 Score=53.31 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+ .+|.++|..|.+.|..|++++.. +.++.+.+++||+||.+++.+..+.
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~------ 216 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLIT------ 216 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCC------
Confidence 34799999865 58999999999999999998642 3467788999999999998876221
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 217 ---~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 ---ADMVKEGAVVIDVGVN 232 (284)
T ss_pred ---HHHcCCCCEEEEeecc
Confidence 2456899999998765
No 416
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=92.86 E-value=0.26 Score=54.70 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHH---HHhc-C-----------CcccCCHHHHhccCcEEEE
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTK---FQNV-G-----------GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~---l~~~-G-----------~~~~~s~~e~~~~aDvV~l 208 (988)
..++|.|-| .|.+|+.+...|.++||.|.+.-|+++.-+. |.+. | +.-.++..+++++||.||=
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 457899997 4899999999999999999999999886322 3332 1 1235678899999999884
Q ss_pred E
Q 001973 209 M 209 (988)
Q Consensus 209 ~ 209 (988)
+
T Consensus 85 ~ 85 (327)
T KOG1502|consen 85 T 85 (327)
T ss_pred e
Confidence 4
No 417
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=92.74 E-value=0.99 Score=56.30 Aligned_cols=115 Identities=10% Similarity=0.143 Sum_probs=80.3
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccc--------c
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRA--------S 276 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a--------~ 276 (988)
||+|+|-.. +.+++ +++.+.++++++|.|.++++....+.+.+.+.. ....|+.+ |+.|....- -
T Consensus 1 vila~Pv~~-~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~--~~~~fvg~HPMaG~e~~G~~~a~~~Lf 74 (673)
T PRK11861 1 VLLAAPVAQ-TGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGA--RIGQFVPGHPIAGRESSGVDAALADLY 74 (673)
T ss_pred CEEEcCHHH-HHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccc--cCCeEEecCCcCcCcchhhhhhChhHh
Confidence 689999755 55666 578888999999999999998777776665542 12456665 666664332 2
Q ss_pred CCCeEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH
Q 001973 277 MGELTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327 (988)
Q Consensus 277 ~g~l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~ 327 (988)
.|...+++- .+.+.++.++++++.+|.+++.+ .+-.+-..+-++..+-..
T Consensus 75 ~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~-~~~~HD~~~A~iShlpH~ 127 (673)
T PRK11861 75 VGRNVVLCALPENAPDALARVEAMWRAARADVRAM-SAEQHDRVFAAVSHLPHV 127 (673)
T ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC-CHHHHHHHHHHHhhHHHH
Confidence 456566663 35778999999999999998875 555555555555554443
No 418
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=92.74 E-value=0.66 Score=51.27 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=72.9
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhcc--CcEEEEEcCChHHHHHH
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKD--VGVLVIMVTNEAQAESV 219 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~v 219 (988)
.++.||.|.|. |.+|..+..+|.+.|++ .+|=.+|.. .+++ .|.+...++.|+-+. .|+.++++|.+.. .++
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v-~~~ 81 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPFA-ADA 81 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHHH-HHH
Confidence 34579999998 88999999999999997 666555541 1111 378888999998887 8999999998663 333
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+ ++... ..-+..+|..+.......+++.+...+ .|++++
T Consensus 82 l---~e~~~-~gvk~avI~s~Gf~~~~~~~l~~~a~~--~girvl 120 (291)
T PRK05678 82 I---LEAID-AGIDLIVCITEGIPVLDMLEVKAYLER--KKTRLI 120 (291)
T ss_pred H---HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 3 23332 222344555555544334466666655 455555
No 419
>PRK06182 short chain dehydrogenase; Validated
Probab=92.71 E-value=0.8 Score=50.07 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|.|. |.+|..++..|++.|++|++.+|++++.+.+...+ ..++..-+.+...++.++ +
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-------------~~~~~~Dv~~~~~~~~~~---~ 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-------------VHPLSLDVTDEASIKAAV---D 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-------------CeEEEeeCCCHHHHHHHH---H
Confidence 357888885 89999999999999999999999988776654322 334444555666666665 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.+.+...+=+++|++...
T Consensus 67 ~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 444433334677776653
No 420
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=92.70 E-value=0.29 Score=51.80 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=74.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC---CeEEEEeCChhHHHHHHhc----------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN---FTVIGYDVYRPTLTKFQNV----------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~----------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
.--..++|.|......-....+.- .+|.+|+|+++.++++.+. .+..+.+..+++..+|+|+.|+++
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls 217 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS 217 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc
Confidence 346899999999988777666543 4799999999998887762 234578899999999999999987
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
. +..++ .+.++||+-|=-..+..|.-- +.-..+-+ .+.-|+|.
T Consensus 218 t---ePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq--~a~vfVDs 260 (333)
T KOG3007|consen 218 T---EPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQ--SACVFVDS 260 (333)
T ss_pred C---Cceee-----eeeecCCceEeeeccCCchHH-HHhHHHhh--hheEEEec
Confidence 3 34443 345777754433455555543 34333333 24556654
No 421
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.68 E-value=0.34 Score=60.23 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+.++|.|||.|..|...|..|++.||+|++|++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34699999999999999999999999999999864
No 422
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.68 E-value=0.36 Score=52.66 Aligned_cols=75 Identities=20% Similarity=0.137 Sum_probs=59.9
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.+++..|.++|..|++++.. +.++.+..++||+|+.+++.+.-+.
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~------ 215 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVK------ 215 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC------
Confidence 34799999976 57999999999999999998643 3467788899999999998765322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 216 ---~~~ik~gaiVIDvGin 231 (282)
T PRK14182 216 ---GAWVKEGAVVIDVGMN 231 (282)
T ss_pred ---HHHcCCCCEEEEeece
Confidence 2457899999998765
No 423
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.61 E-value=0.59 Score=50.54 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEE--EEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL--VIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV--~l~vp~~~~~~~vl~~ 222 (988)
.+++-|.|. |.+|..++..|+++|++|.+.+|+++..+++.+. ..+. .+++. ..-+.+...++.++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~--~~~~~~~~~Dl~~~~~~~~~~-- 75 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE-------INKA--GGKAIGVAMDVTNEDAVNAGI-- 75 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH-------HHhc--CceEEEEECCCCCHHHHHHHH--
Confidence 457888887 9999999999999999999999998776655432 0000 12222 22234445555554
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+-..+|++...
T Consensus 76 -~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 76 -DKVAERFGSVDILVSNAGI 94 (262)
T ss_pred -HHHHHHcCCCCEEEECCcc
Confidence 3333333444677777654
No 424
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=92.61 E-value=0.17 Score=56.40 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=42.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-Ccc-cC---CHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-GLI-AN---SPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-~~~-~~---s~~e~~~~aDvV 206 (988)
++|||||.|..|..|+..-.+.|++|.+.|.+++.-..-.... +.. .+ .+.++++.||+|
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEE
Confidence 6899999999999999999999999999998876543322211 111 12 344566677765
No 425
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=92.58 E-value=0.31 Score=52.67 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-++ +|.+|+..|...++.|++.+.. +.++.+..+++|+++.++.-+.-+.
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~------ 214 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIK------ 214 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccccc------
Confidence 347999999886 6999999999999999999754 3567788899999999998766332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.++||....
T Consensus 215 ---~d~vk~gavVIDVGin 230 (283)
T COG0190 215 ---ADMVKPGAVVIDVGIN 230 (283)
T ss_pred ---cccccCCCEEEecCCc
Confidence 2456789999998765
No 426
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.55 E-value=0.33 Score=52.54 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=35.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
+|+|.|+|. |.+|..++..|.++||+|++..|++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 469999995 9999999999999999999999998876544
No 427
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.53 E-value=1.3 Score=52.47 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=49.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH--HHHHHh--cCCccc--CCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT--LTKFQN--VGGLIA--NSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~--~G~~~~--~s~~e~~~~aDvV~l~vp~ 212 (988)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+ .|+... ....+...++|+|+.+..-
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi 77 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGI 77 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCC
Confidence 468999999999999999999999999999976543 345554 365542 1123344689999987543
No 428
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.53 E-value=0.39 Score=52.50 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCeEEEEccc-hHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
.+++.|||-+ .+|.+++..|.+ .+..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~----- 218 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVT----- 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccC-----
Confidence 4799999975 589999999998 68889988643 4568888999999999999876322
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 219 ----~~~ik~GavVIDvGin 234 (284)
T PRK14193 219 ----ADMVKPGAAVLDVGVS 234 (284)
T ss_pred ----HHHcCCCCEEEEcccc
Confidence 3457899999998865
No 429
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=92.44 E-value=0.15 Score=59.21 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=35.0
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
|+++.+.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 455566789999999999999999999999999999875
No 430
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.43 E-value=0.37 Score=53.83 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=59.9
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.++|..|.++|..|+++... +.++.+..++||+||.+++.+.-+.
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~------- 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVR------- 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccC-------
Confidence 4789999976 47999999999999999988643 3467788999999999999876322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 273 --~d~vk~GavVIDVGin 288 (345)
T PLN02897 273 --GSWLKPGAVVIDVGTT 288 (345)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 2457899999998865
No 431
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.43 E-value=0.86 Score=50.03 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=37.0
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 188 (988)
++|-|.|. |.+|..+|+.|++.|++|++.+|+++..+.+.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 47888887 9999999999999999999999999888776643
No 432
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.40 E-value=0.41 Score=52.36 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+++.|||-+ .+|.++|..|.+. +..|++++.. +.++.+.++.||+|+.+++.+.-+.
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~-- 215 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIK-- 215 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC--
Confidence 34799999976 5799999999988 7889988642 3467888999999999999876322
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 216 -------~~~ik~GavVIDvGin 231 (287)
T PRK14181 216 -------EEMIAEKAVIVDVGTS 231 (287)
T ss_pred -------HHHcCCCCEEEEeccc
Confidence 3457899999998865
No 433
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=92.40 E-value=2 Score=45.10 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=73.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh-hHHHHHHhcCC-cc---cCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR-PTLTKFQNVGG-LI---ANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~G~-~~---~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..++|.|||.|.+|..=++.|.+.|-+|++|..+. +....+...+- .. .-++.+ ...+++||.+++++.--+.+
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ln~~i 89 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEELNERI 89 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHHHHHH
Confidence 34699999999999999999999999999997665 45555554432 21 112233 44599999999997643333
Q ss_pred Hcccc----------------chhh-hCCCCCEEEecCCCC--HHHHHHHHHHHHh
Q 001973 220 LYGDL----------------GAVS-ALSSGASIILSSTVS--PGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~----------------~i~~-~l~~g~ivId~st~~--p~~~~~l~~~l~~ 256 (988)
....+ -+.+ ....+.+.|-.||.+ |..++.+-+.+.+
T Consensus 90 ~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 90 AKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 21000 0111 234566667666654 8888888887765
No 434
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.40 E-value=0.64 Score=50.21 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=63.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|||+|..|+.++.+|+..|. +++++|.+.-....+..+ |...+....+-+. ..++-+.+.+..-.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~ 112 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD 112 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 599999999999999999999995 799998875443344322 2222222222221 22343444332111
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv 268 (988)
-+ .+...+..-++||+++.. +..-..+.+.... .+..++.+.+
T Consensus 113 ~~-------~~~~~~~~~DiVi~~~D~-~~~r~~ln~~~~~--~~ip~v~~~~ 155 (245)
T PRK05690 113 DD-------ELAALIAGHDLVLDCTDN-VATRNQLNRACFA--AKKPLVSGAA 155 (245)
T ss_pred HH-------HHHHHHhcCCEEEecCCC-HHHHHHHHHHHHH--hCCEEEEeee
Confidence 11 111223455788887754 4544455665554 4566666543
No 435
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.33 E-value=0.72 Score=49.69 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=55.2
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.| .|.+|..+++.|++.|++|.+.+|+++..+.+...- ...-....++..-+.++..++.++ +
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~---~ 73 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL-------QKAGGKAIGVAMDVTDEEAINAGI---D 73 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH-------HhcCCcEEEEEcCCCCHHHHHHHH---H
Confidence 35899998 699999999999999999999999988776543310 000011223333445556666655 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+-.++|++..
T Consensus 74 ~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 74 YAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 44444444466776654
No 436
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.32 E-value=0.81 Score=50.84 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=55.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+|..|+++|++|++.+|+.++.+++.+.- .+....+.++-.-+.+...+..++ +
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l-------~~~~~~~~~~~~Dl~d~~~v~~~~---~ 109 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI-------TRAGGDAMAVPCDLSDLDAVDALV---A 109 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HhcCCcEEEEEccCCCHHHHHHHH---H
Confidence 467888886 99999999999999999999999988776654320 000011222223344555566665 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.+.+...+=+++|++...
T Consensus 110 ~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 110 DVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 444444444677776543
No 437
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.32 E-value=0.81 Score=51.83 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=55.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |-+|..++..|++.|++|++.+|++++.+++.+. ..+.-.+..++..=+.++.+++.++ +
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~-------~~~~g~~~~~~~~Dv~d~~~v~~~~---~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEE-------CRALGAEVLVVPTDVTDADQVKALA---T 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHH---H
Confidence 457888887 8999999999999999999999999887665432 1110011222333355666666665 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=+++|++..
T Consensus 77 ~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 77 QAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 44333333467777664
No 438
>PRK07236 hypothetical protein; Provisional
Probab=92.32 E-value=0.17 Score=58.66 Aligned_cols=37 Identities=24% Similarity=0.121 Sum_probs=33.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|+.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3457999999999999999999999999999998753
No 439
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.32 E-value=0.86 Score=49.52 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=52.9
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+.+++-|.|. |.+|..++..|++.|++|++.+|+++..+++.+.- -..+.++-.-+.+..+++.++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~--- 71 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL----------GERARFIATDITDDAAIERAV--- 71 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCeeEEEEecCCCHHHHHHHH---
Confidence 3457888875 99999999999999999999999988766654320 011223333344555555555
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|++..
T Consensus 72 ~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 72 ATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 333333333355665543
No 440
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.32 E-value=0.77 Score=49.18 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
.++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 468989985 99999999999999999999999988766543
No 441
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.30 E-value=0.43 Score=59.14 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=32.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.+||.|||.|..|...|..|++.||+|++|++.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4699999999999999999999999999999876
No 442
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.23 E-value=0.71 Score=48.16 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=62.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc----------CCcccCCHHHHhc--cCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV----------GGLIANSPAEAAK--DVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----------G~~~~~s~~e~~~--~aDvV~l~vp~~ 213 (988)
.+|.|||+|.+|+.++++|+..|. +++++|.+.-....+... |...+....+.++ ..++-+.+....
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence 589999999999999999999995 699999775333333221 1111111111111 234444443321
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.. ... +.....+.+-++||++.. .+.....+.+...+ .++.++.+-
T Consensus 100 ~~--~~~---~~~~~~~~~~dvVi~~~d-~~~~~~~ln~~c~~--~~ip~i~~~ 145 (198)
T cd01485 100 SL--SND---SNIEEYLQKFTLVIATEE-NYERTAKVNDVCRK--HHIPFISCA 145 (198)
T ss_pred cc--cch---hhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH--cCCCEEEEE
Confidence 10 000 011122334578887744 36666677777666 455565543
No 443
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.20 E-value=0.99 Score=47.85 Aligned_cols=85 Identities=13% Similarity=0.018 Sum_probs=55.1
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+++.|+++|++|++.+|++++..+..+. . . ...+.++..-+.+..+++.++ +
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~------~--~~~~~~~~~D~~~~~~~~~~~---~ 74 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-V------P--ADALRIGGIDLVDPQAARRAV---D 74 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-H------h--hcCceEEEeecCCHHHHHHHH---H
Confidence 468999975 9999999999999999999999988765443221 0 0 012344445556666666665 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
++.+...+-+.|+++...
T Consensus 75 ~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 75 EVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHhCCcCEEEECCcc
Confidence 443333344566666543
No 444
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.15 E-value=0.7 Score=52.80 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=40.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeC---ChhHHHHHHhcCCcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDV---YRPTLTKFQNVGGLI 192 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr---~~~~~~~l~~~G~~~ 192 (988)
..+|.|+|+|.+|...+..+...|.+|++.++ ++++.+.+.+.|+..
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 35899999999999999988889999999998 678888777777654
No 445
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.15 E-value=1.4 Score=48.68 Aligned_cols=147 Identities=26% Similarity=0.291 Sum_probs=78.8
Q ss_pred CeEEEEccchHHHHHHHHHHh-CCCeEEE-EeCChhHHHHHHh-cCCc--------ccCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLR-SNFTVIG-YDVYRPTLTKFQN-VGGL--------IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~-~G~~V~v-~dr~~~~~~~l~~-~G~~--------~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
-|||+||.|.||+.|....++ .|.+|.. -||+.+.+.+.-. .|.. -.+..+++++.--+.++ + +
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT---~--D 92 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVT---D--D 92 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEe---c--c
Confidence 489999999999999999886 5787555 4899888766544 2321 12334445544444332 1 1
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe--cCcccCCccccc----CCCeEEEEeCC-H
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV--DAPVSGGVKRAS----MGELTIMAAGT-E 288 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l--dapv~g~~~~a~----~g~l~~~~gg~-~ 288 (988)
.+.++ +...=..|||.+.. |....++.-..-.+++.+-.+ .+-++-||--.. .|.......|| +
T Consensus 93 ~~~i~--------~~~~IdvIIdATG~-p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP 163 (438)
T COG4091 93 AELII--------ANDLIDVIIDATGV-PEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEP 163 (438)
T ss_pred hhhhh--------cCCcceEEEEcCCC-cchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCc
Confidence 22222 11112456665554 554444432222322332222 333444443321 23333333344 4
Q ss_pred HHHHHHHHHHHhcCCeEEE
Q 001973 289 ESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~ 307 (988)
...-++-++.+++|..++.
T Consensus 164 ~~~mEL~efa~a~G~evv~ 182 (438)
T COG4091 164 SSCMELYEFASALGFEVVS 182 (438)
T ss_pred HHHHHHHHHHHhcCCeEEe
Confidence 5666777888888887765
No 446
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.14 E-value=0.55 Score=55.34 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=64.0
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HH----HHH-hcCCcccC-CHHHHhccCcEEEEEcCCh---HHHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LT----KFQ-NVGGLIAN-SPAEAAKDVGVLVIMVTNE---AQAE 217 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~----~l~-~~G~~~~~-s~~e~~~~aDvV~l~vp~~---~~~~ 217 (988)
||.|||+|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+.+.. ...+.+.++|+|+.+..-+ ..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999999999999976442 11 122 24665421 1244567899888765222 2232
Q ss_pred HHHc------cccchhhhCCCCCEEEecCCCCHH-HHHHHHHHHHh
Q 001973 218 SVLY------GDLGAVSALSSGASIILSSTVSPG-FVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~------~~~~i~~~l~~g~ivId~st~~p~-~~~~l~~~l~~ 256 (988)
.... ..-+++..+.+.++|..+.|..-. ++.-++..+..
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 126 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKA 126 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 2210 011222222244455555555444 55555666665
No 447
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.86 Score=49.17 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=35.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+.+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3457888875 78999999999999999999999988776654
No 448
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.01 E-value=0.56 Score=55.83 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=31.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..+|.|||.|..|...|..|++.|++|++|++.+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999875
No 449
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.97 E-value=1.1 Score=46.61 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=62.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|||+|.+|+.++++|+..|. +++++|.+.-....+... |-..+....+.++ ..++-+.+.+..-.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~ 101 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDIS 101 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 589999999999999999999996 699999775333333321 2111111122121 23444444332110
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCccc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVS 269 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~ 269 (988)
+ .....+..-++||+++. .+..-..+.+.+.+ .++.++.+-+.
T Consensus 102 -~-------~~~~~~~~~dvVi~~~~-~~~~~~~ln~~c~~--~~ip~i~~~~~ 144 (197)
T cd01492 102 -E-------KPEEFFSQFDVVVATEL-SRAELVKINELCRK--LGVKFYATGVH 144 (197)
T ss_pred -c-------cHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH--cCCCEEEEEec
Confidence 0 00111233467776654 46666677777665 45666655443
No 450
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.95 E-value=0.58 Score=55.62 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=47.7
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-H----HHHHhcCCcccC--CHH-----HHhccCcEEEEEcCC
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-L----TKFQNVGGLIAN--SPA-----EAAKDVGVLVIMVTN 212 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~----~~l~~~G~~~~~--s~~-----e~~~~aDvV~l~vp~ 212 (988)
||.|||+|..|.+.|+.|.+.|++|+++|+++.. . +.+.+.|+++.. ... +...+.|+|+.+..-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi 78 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGI 78 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCC
Confidence 7999999999999999999999999999976532 2 346666765521 111 346678988885443
No 451
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=91.91 E-value=0.36 Score=56.40 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=49.7
Q ss_pred CeEEEEccchH-HHHHHHHHHhC-----CCeEEEEeCChhHHHHHHh--------cC----CcccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAM-GFGMATHLLRS-----NFTVIGYDVYRPTLTKFQN--------VG----GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~--------~G----~~~~~s~~e~~~~aDvV~l 208 (988)
|||+|||.|.. .-.+...|++. +.+|..+|+++++.+.... .| +..++|.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 59999999984 33455666543 3689999999988765322 23 3458899999999999998
Q ss_pred EcCCh
Q 001973 209 MVTNE 213 (988)
Q Consensus 209 ~vp~~ 213 (988)
..--.
T Consensus 81 ~irvG 85 (425)
T cd05197 81 QFRVG 85 (425)
T ss_pred eeecC
Confidence 87543
No 452
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.91 E-value=0.84 Score=53.89 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=46.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH--HHHHHhcCCccc--CCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT--LTKFQNVGGLIA--NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~G~~~~--~s~~e~~~~aDvV~l~v 210 (988)
..++|.|+|.|..|.+.++.|.+.|++|+++|..+.. .+.+. .|+... ....+.+++.|+|+.+-
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASP 73 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECC
Confidence 3468999999999999999999999999999975432 23453 366542 22334456788766554
No 453
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=91.89 E-value=0.76 Score=49.24 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
+.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 346899998 79999999999999999999999997665443
No 454
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.88 E-value=0.44 Score=52.57 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=45.9
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC----cccCCHHHHh------cc-CcEEEEEcCC
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG----LIANSPAEAA------KD-VGVLVIMVTN 212 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~----~~~~s~~e~~------~~-aDvV~l~vp~ 212 (988)
+|.|+|. |.+|..++..|.+.||+|++..|++++.....-... .-.+++.+++ +. +|.+|++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4788887 999999999999999999999999876432110011 1123444555 45 8999888764
No 455
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=91.87 E-value=1 Score=48.36 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=53.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+|-|+|. |.+|..++..|++.|++|++.+|++++.+.+...- -.+..++-.-+.+...++.++ +.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~i~~~~---~~ 67 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----------GDNLYIAQLDVRNRAAIEEML---AS 67 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------ccceEEEEecCCCHHHHHHHH---HH
Confidence 47889985 99999999999999999999999988776654320 012233333345555566655 33
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+-+.+|++..
T Consensus 68 ~~~~~~~id~vi~~ag 83 (248)
T PRK10538 68 LPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHcCCCCEEEECCC
Confidence 4333334456666554
No 456
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.85 E-value=0.3 Score=42.70 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=30.8
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999998764
No 457
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.83 E-value=0.42 Score=57.28 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=35.9
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
.++|.|.|. |.+|..+++.|++.|++|++++|+.++.+.+.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 357888886 99999999999999999999999998876654
No 458
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.83 E-value=0.25 Score=56.15 Aligned_cols=88 Identities=16% Similarity=0.296 Sum_probs=53.0
Q ss_pred CeEEEEcc-chHHHHHHH-HHHhCCCe---EEEEeCChh--HHHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHH
Q 001973 147 TRVGFIGL-GAMGFGMAT-HLLRSNFT---VIGYDVYRP--TLTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~-~L~~~G~~---V~v~dr~~~--~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
++|||||+ |++|..|.+ .|.+..++ +..+..... +.-.+........ .+. +...++|++|+|+|+.. .+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~~-s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGDY-TN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHHH-HH
Confidence 69999997 999999998 55556666 666543211 1111111111122 223 34578999999999865 33
Q ss_pred HHHccccchhhhCCCC--CEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSG--ASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g--~ivId~st~ 242 (988)
.+. ..+ ...| .+|||.|+.
T Consensus 80 ~~~---~~~---~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVY---PKL---RAAGWQGYWIDAAST 100 (369)
T ss_pred HHH---HHH---HhCCCCeEEEECChH
Confidence 333 122 2356 579999874
No 459
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.79 E-value=0.84 Score=49.25 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+.+++-|.|. |.+|..++..|++.|++|.+.+|++++.+.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 3457888886 89999999999999999999999988776654
No 460
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.78 E-value=0.48 Score=52.44 Aligned_cols=41 Identities=7% Similarity=0.137 Sum_probs=35.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh---hHHHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR---PTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~ 187 (988)
+++.|+|+|-.+.+++..|+..|. +|+++||++ ++.+.+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHH
Confidence 479999999999999999999885 799999995 47666654
No 461
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.75 E-value=0.2 Score=58.11 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
.++|.|||.|..|..+|..|++.|++|++++++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999999763
No 462
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.74 E-value=0.74 Score=50.23 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=58.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHH-------Hh-----ccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAE-------AA-----KDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e-------~~-----~~aDvV~l~vp~~ 213 (988)
.+++|+|+|.+|.+.+..-..+|- ++++.|.|+++.+...+.|++-+-++.+ .+ ...|+-|-|+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence 589999999999999999998884 7999999999999999999865444442 22 1457777777776
Q ss_pred HHHHHHH
Q 001973 214 AQAESVL 220 (988)
Q Consensus 214 ~~~~~vl 220 (988)
..+++.+
T Consensus 274 ~~m~~al 280 (375)
T KOG0022|consen 274 STMRAAL 280 (375)
T ss_pred HHHHHHH
Confidence 6666554
No 463
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.68 E-value=1 Score=49.67 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=39.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhcCCc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~G~~ 191 (988)
.+|.|+|.|.+|...+..+...|.+ |++.++++++.+.+.+.|+.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 4899999999999999988888986 88889999998888777764
No 464
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=91.63 E-value=1.2 Score=47.53 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=57.2
Q ss_pred cCCCCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 142 KSNSVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 142 ~~~~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+.++.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+.+...- -..+.++-.-+.+...++.++
T Consensus 2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~ 71 (245)
T PRK12936 2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL----------GERVKIFPANLSDRDEVKALG 71 (245)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----------CCceEEEEccCCCHHHHHHHH
Confidence 333456888888 699999999999999999999999988776654320 011222223344555566655
Q ss_pred ccccchhhhCCCCCEEEecCCC
Q 001973 221 YGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~ 242 (988)
+++.+...+=+.+|++...
T Consensus 72 ---~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 72 ---QKAEADLEGVDILVNNAGI 90 (245)
T ss_pred ---HHHHHHcCCCCEEEECCCC
Confidence 3444444444677777654
No 465
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=91.60 E-value=0.51 Score=52.97 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=59.8
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.++|..|.++|..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~------- 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVR------- 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCC-------
Confidence 4689999876 57999999999999999998633 3567888999999999999876322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||....
T Consensus 290 --~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 290 --GSWIKPGAVVIDVGIN 305 (364)
T ss_pred --HHHcCCCCEEEecccc
Confidence 2457899999998765
No 466
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.58 E-value=1.1 Score=50.84 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=39.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
.+|.|+|+|.+|......+...|. +|++.++++++.+.+.+.|+.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 589999999999999998888897 699999999999888887764
No 467
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=91.54 E-value=0.46 Score=52.13 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=59.1
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHH-HHHHcccc
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQA-ESVLYGDL 224 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~-~~vl~~~~ 224 (988)
++.|+|+|-.+.+++..|++.|. +|+++||++++.+.+.+. +.....++ ....+|+||-|+|-...- .+.- ..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~--~~ 199 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEAD--KL 199 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCccc--cC
Confidence 79999999999999999999996 599999999999888653 21111111 124578888888743210 0000 00
Q ss_pred ch-hhhCCCCCEEEecCCCCH
Q 001973 225 GA-VSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i-~~~l~~g~ivId~st~~p 244 (988)
.+ ...+.++.++.|+.-.++
T Consensus 200 pi~~~~l~~~~~v~D~vY~P~ 220 (272)
T PRK12550 200 AFPEAEIDAASVVFDVVALPA 220 (272)
T ss_pred CCCHHHcCCCCEEEEeecCCc
Confidence 01 123556677777765543
No 468
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=91.53 E-value=0.21 Score=56.08 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=45.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~v 210 (988)
|+|.|.|. |.+|..++..|++.|++|++.+|+++....+...++.. .+++.++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 47999985 99999999999999999999999877654333223221 123344556677776654
No 469
>PRK07825 short chain dehydrogenase; Provisional
Probab=91.41 E-value=1.2 Score=48.60 Aligned_cols=82 Identities=16% Similarity=-0.013 Sum_probs=53.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.- ....++..=+.++.+++.++ +
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~---~ 70 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL-----------GLVVGGPLDVTDPASFAAFL---D 70 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----------ccceEEEccCCCHHHHHHHH---H
Confidence 357888876 89999999999999999999999998876654321 01223333344555565555 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=.++|++..
T Consensus 71 ~~~~~~~~id~li~~ag 87 (273)
T PRK07825 71 AVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 34333333356666544
No 470
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.36 E-value=0.55 Score=58.35 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
.++|.|||.|..|...|..|++.||+|++|++++.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46999999999999999999999999999998753
No 471
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.28 E-value=0.41 Score=54.51 Aligned_cols=39 Identities=23% Similarity=0.538 Sum_probs=33.4
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEEEEeCChhHHHHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 185 (988)
|+|.|.|. |.+|+.++..|.+. ||+|+++||+.++...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 68999996 99999999999986 69999999987655444
No 472
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.26 E-value=1.1 Score=48.20 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=53.6
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+|..|++.|++|++.+|+++..+.+.+.- ...-.....+-.-+.++..++.++ +
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~---~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI-------DDLGRRALAVPTDITDEDQCANLV---A 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HHhCCceEEEecCCCCHHHHHHHH---H
Confidence 357888875 89999999999999999999999987766554321 000012233333345555565555 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+-+.+|++..
T Consensus 75 ~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 75 LALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHcCCccEEEECCc
Confidence 34333333356666654
No 473
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=91.21 E-value=0.25 Score=57.73 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=31.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.+|.|||.|.+|.++|..|++.|++|+++|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999874
No 474
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.10 E-value=1.2 Score=48.21 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
+.++|-|+|. |.+|..++..|+++|++|++.+|+++..+.+.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4468999975 999999999999999999999999877666543
No 475
>PRK09414 glutamate dehydrogenase; Provisional
Probab=91.08 E-value=0.96 Score=52.82 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=67.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEE-e----------CChhHHHHHHhc--C----------CcccCCHHHHh-
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGY-D----------VYRPTLTKFQNV--G----------GLIANSPAEAA- 200 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~--G----------~~~~~s~~e~~- 200 (988)
+.++|+|.|.|++|...|+.|.+.|.+|++. | .+.+.+.+..+. | +... +.++..
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~ 309 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWS 309 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccc
Confidence 3479999999999999999999999998877 8 676665554432 1 1111 223332
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
.+|||++-|-.......+.. ..+.. ++-++|+...+. |- +.+..+.|.+ +|+.|+
T Consensus 310 ~d~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~-p~-t~~A~~~L~~--rGI~~v 364 (445)
T PRK09414 310 VPCDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANM-PS-TPEAIEVFLE--AGVLFA 364 (445)
T ss_pred cCCcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCC-CC-CHHHHHHHHH--CCcEEE
Confidence 37999998876544332222 11211 123455555544 44 4445566666 566665
No 476
>PRK06153 hypothetical protein; Provisional
Probab=91.08 E-value=0.75 Score=52.28 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=30.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
.+|+|||+|-.|+.++..|++.|. +++++|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999996 799998774
No 477
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.02 E-value=0.7 Score=50.79 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+++.|||-+ .+|.+++..|.++ +..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 156 ~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~-- 219 (293)
T PRK14185 156 SGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------------SKNLKKECLEADIIIAALGQPEFVK-- 219 (293)
T ss_pred CCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------------CCCHHHHHhhCCEEEEccCCcCccC--
Confidence 34799999976 5799999999988 5688888532 3467788899999999999877322
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 220 -------~~~vk~gavVIDvGin 235 (293)
T PRK14185 220 -------ADMVKEGAVVIDVGTT 235 (293)
T ss_pred -------HHHcCCCCEEEEecCc
Confidence 2457899999998875
No 478
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.96 E-value=0.26 Score=57.11 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=33.4
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
+++..+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 34446899999999999999999999999999998753
No 479
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=90.93 E-value=1.8 Score=47.77 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhcCCcccCCHHHHhcc--CcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNVGGLIANSPAEAAKD--VGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~vl~ 221 (988)
+.||.|.| .|.+|..+-.+|...|++ .+|..+|.+- ++ -.|.+...|..|+.+. .|+.++++|... +.+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~-v~~~l- 80 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPF-AADAI- 80 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHH-HHHHH-
Confidence 46899999 599999999999999999 7777777631 11 1378889999998876 799999999866 33343
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++... ..-+..+|..+.......+++.+...+ .|++++
T Consensus 81 --~e~~~-~Gvk~avIis~Gf~e~~~~~l~~~a~~--~giril 118 (286)
T TIGR01019 81 --FEAID-AGIELIVCITEGIPVHDMLKVKRYMEE--SGTRLI 118 (286)
T ss_pred --HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 23322 122344454444443334566666655 455555
No 480
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.91 E-value=1 Score=52.38 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=42.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh--ccCcEEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA--KDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~--~~aDvV~l~ 209 (988)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.|+.+. ..+.. +++|+|+.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~--~~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL--PSNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe--cHHHcCcCCCCEEEEC
Confidence 58999999999999999999 9999999996533221 223366553 12223 468987765
No 481
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=90.87 E-value=0.66 Score=54.62 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=53.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhcCCcc--------cCCHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP---------------------TLTKFQNVGGLI--------ANSPA 197 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~G~~~--------~~s~~ 197 (988)
.+|+|||.|.-|.+.|..|+++||.|++|++.+. .++.|.+.|+.+ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 6999999999999999999999999999988752 233455555432 34677
Q ss_pred HHhccCcEEEEEcCChH
Q 001973 198 EAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 198 e~~~~aDvV~l~vp~~~ 214 (988)
++.++-|.||+++.+..
T Consensus 204 ~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 204 ELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHhhCEEEEeccccC
Confidence 88888899999987643
No 482
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.83 E-value=1 Score=53.26 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=64.7
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhH--HHHHHhcCCccc-C-CHHHHhccCcEEEEEcCCh---HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPT--LTKFQNVGGLIA-N-SPAEAAKDVGVLVIMVTNE---AQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~G~~~~-~-s~~e~~~~aDvV~l~vp~~---~~~~ 217 (988)
++|.|||+|..|.+.++.|.+. |++|+++|..+.. .+.|.+ |+.+. . ...+.+.++|+|+.+..-+ ..++
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999988 5889999976432 234543 76552 1 1234457899887765222 2233
Q ss_pred HHHc------cccchhhhCCCCCEEEecCCCCHHHHHH-HHHHHHh
Q 001973 218 SVLY------GDLGAVSALSSGASIILSSTVSPGFVSQ-LERRLQF 256 (988)
Q Consensus 218 ~vl~------~~~~i~~~l~~g~ivId~st~~p~~~~~-l~~~l~~ 256 (988)
.... +.-+++..+.+.++|..+.|..-.|+.. ++..+..
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2211 0112222222445666665655555554 4555554
No 483
>PLN02477 glutamate dehydrogenase
Probab=90.74 E-value=1 Score=52.21 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEE-EEeCC----------hhHHHHHHhcCC--------cccCCHHHH-hccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVI-GYDVY----------RPTLTKFQNVGG--------LIANSPAEA-AKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~G~--------~~~~s~~e~-~~~aDv 205 (988)
.++|+|.|.|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+.+. ... +..+. ..+||+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 4799999999999999999999999988 66776 555544333221 111 22222 348898
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++-|--. .++. .+-.+.+ +-++|+...+. |- +.+..+.|.+ +|+.|+
T Consensus 285 liP~Al~-----~~I~--~~na~~i-~ak~I~egAN~-p~-t~ea~~~L~~--rGI~~~ 331 (410)
T PLN02477 285 LIPAALG-----GVIN--KENAADV-KAKFIVEAANH-PT-DPEADEILRK--KGVVVL 331 (410)
T ss_pred Eeecccc-----ccCC--HhHHHHc-CCcEEEeCCCC-CC-CHHHHHHHHH--CCcEEE
Confidence 8877433 2332 1112223 34566665555 43 4455666766 577766
No 484
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=90.72 E-value=0.37 Score=40.85 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=27.2
Q ss_pred EEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 151 FIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 151 iIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|||.|.-|...|..|++.|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
No 485
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.72 E-value=0.26 Score=56.79 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
...|+|.|.|. |.+|+.+++.|.+.||+|++.+|..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34579999997 9999999999999999999999864
No 486
>PRK05693 short chain dehydrogenase; Provisional
Probab=90.71 E-value=1.7 Score=47.42 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=53.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+++-|.|. |.+|..++..|++.|++|++.+|+++..+.+...+ ...+-.=+.++..++.++ +.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------~~~~~~Dl~~~~~~~~~~---~~ 65 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-------------FTAVQLDVNDGAALARLA---EE 65 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------------CeEEEeeCCCHHHHHHHH---HH
Confidence 46777774 89999999999999999999999988776655432 223333345555566655 33
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.+...+=+++|++.+.
T Consensus 66 ~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 66 LEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 33333344677777653
No 487
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=90.66 E-value=1.6 Score=47.17 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+.++|-|.|. |.+|..++..|++.|++|++++|+++..+.+.+. ..+.-....++..-+.++.++..++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~--- 79 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAA-------LRAAGGAAEALAFDIADEEAVAAAF--- 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHH---
Confidence 3467888865 8899999999999999999999998776554331 1110112233333455556666655
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+++.....+=..+|++..
T Consensus 80 ~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 333333333345565544
No 488
>PRK06194 hypothetical protein; Provisional
Probab=90.65 E-value=1.3 Score=48.81 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=34.9
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
++++|-|.| .|.+|..++..|++.|++|+++||+.+..+++.
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 345788887 589999999999999999999999987665543
No 489
>PRK06185 hypothetical protein; Provisional
Probab=90.63 E-value=0.28 Score=57.15 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=34.6
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
||+....+|.|||.|..|..+|..|+++|++|+++++++
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 444555689999999999999999999999999999875
No 490
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.58 E-value=0.8 Score=50.47 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=59.0
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..++|.|||-+ .+|.++|..|.+. +..|+++... +.++++.+++||+|+.++.-+.-+.
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~-- 223 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVK-- 223 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccC--
Confidence 34799999875 5799999999988 6789887543 3467888999999999998766322
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 224 -------~~~ik~gavVIDvGin 239 (297)
T PRK14168 224 -------PEWIKPGATVIDVGVN 239 (297)
T ss_pred -------HHHcCCCCEEEecCCC
Confidence 2457899999998865
No 491
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.54 E-value=1.1 Score=48.23 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-----------CeEEEEeCChhHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-----------FTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-----------~~V~v~dr~~~~~~~l~ 186 (988)
..||.|||+|..|+.++.+|++.| .+++++|.+.=....++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLn 62 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVG 62 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhh
Confidence 469999999999999999999874 28999997753333333
No 492
>PRK06847 hypothetical protein; Provisional
Probab=90.46 E-value=0.32 Score=55.96 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
++++|.|||.|..|..+|..|.+.|++|++|+++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 356899999999999999999999999999998754
No 493
>PRK14851 hypothetical protein; Provisional
Probab=90.42 E-value=0.97 Score=55.85 Aligned_cols=114 Identities=12% Similarity=0.025 Sum_probs=64.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.+|+|||+|-+|+.++.+|+..|. +++++|.+.=....|+.+ |-..+.-.++.+. ..++-|.+.+..-.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~ 123 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGIN 123 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 599999999999999999999996 688888775444444432 1111111222221 23444444433221
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcCCCceEecCccc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEGKDLKLVDAPVS 269 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~~g~~~ldapv~ 269 (988)
-++ +...+..-++|||++... ......+.+.... .++.++.+.+.
T Consensus 124 ~~n-------~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~~ 169 (679)
T PRK14851 124 ADN-------MDAFLDGVDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGPL 169 (679)
T ss_pred hHH-------HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeecc
Confidence 111 112233457899988764 3333455555444 56667765443
No 494
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=90.42 E-value=0.65 Score=57.93 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=51.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh---------------------hHHHHHHhcCCccc--------CCH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR---------------------PTLTKFQNVGGLIA--------NSP 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~---------------------~~~~~l~~~G~~~~--------~s~ 196 (988)
-.+|+|||.|.-|.+-|..|-+.||.|++|.|+. .+++-+.++|+.+. -++
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~ 1864 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSL 1864 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccH
Confidence 3699999999999999999999999999999864 22333445566543 355
Q ss_pred HHHhccCcEEEEEcCCh
Q 001973 197 AEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~ 213 (988)
.++.+.-|.|++|+.+.
T Consensus 1865 d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1865 DELKKENDAIVLATGST 1881 (2142)
T ss_pred HHHhhccCeEEEEeCCC
Confidence 66667777777777653
No 495
>PLN02427 UDP-apiose/xylose synthase
Probab=90.39 E-value=0.57 Score=54.27 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~ 186 (988)
+.|||.|.| .|.+|+.+++.|.++ |++|+++||+.++...+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh
Confidence 346999998 599999999999998 599999999887766554
No 496
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.37 E-value=0.86 Score=50.22 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+++.|||-+ .+|.++|..|.++ +..|+++... +.++++..++||+|+.++.-+.-+.
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~-- 219 (297)
T PRK14167 156 EGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------------TDDLAAKTRRADIVVAAAGVPELID-- 219 (297)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC--
Confidence 34799999976 5799999999987 6789987532 3467788999999999998766322
Q ss_pred HccccchhhhCCCCCEEEecCCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~ 243 (988)
...+++|.+|||.+...
T Consensus 220 -------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 220 -------GSMLSEGATVIDVGINR 236 (297)
T ss_pred -------HHHcCCCCEEEEccccc
Confidence 24578999999988653
No 497
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.36 E-value=1.7 Score=47.41 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
+.++|-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3468888877 8999999999999999999999998766544
No 498
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.35 E-value=0.79 Score=50.54 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHh----CCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLR----SNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..++|.|||-+ .+|.++|..|.+ .|..|++...+ +.++.+.++.||+||.+++.+..+.
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~--------------t~~l~~~~~~ADIvI~Avg~~~li~-- 221 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA--------------TKDIPSYTRQADILIAAIGKARFIT-- 221 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCccCccC--
Confidence 34799999976 579999999987 67889988754 2356778899999999998764211
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.++||.+..
T Consensus 222 -------~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 222 -------ADMVKPGAVVIDVGIN 237 (295)
T ss_pred -------HHHcCCCCEEEEeecc
Confidence 2346899999998754
No 499
>PLN02214 cinnamoyl-CoA reductase
Probab=90.33 E-value=0.86 Score=51.88 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=32.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
+++|.|.|. |.+|+.++..|.++||+|++.+|+.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 358999997 999999999999999999999998664
No 500
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.28 E-value=1.5 Score=51.99 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=43.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCc-ccCCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGL-IANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~-~~~s~~e~~~~aDvV~l~v 210 (988)
...+|.|+|+|.-|.+.++.|.+ |.+|+++|.++.....+.+. ... ......+...++|+|+.+-
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SP 71 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSP 71 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECC
Confidence 44689999999999999999995 99999999654433222221 111 1111234456789887764
Done!