Query 001974
Match_columns 988
No_of_seqs 962 out of 6291
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.5E-79 3.3E-83 750.9 41.1 581 4-596 25-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.9E-66 2E-70 636.8 32.7 513 34-559 153-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-61 1.3E-65 589.2 39.4 564 18-585 2-627 (680)
4 3t6q_A CD180 antigen; protein- 100.0 9.6E-59 3.3E-63 560.1 35.9 535 13-562 3-565 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-57 5.8E-62 556.8 39.0 523 32-562 49-627 (680)
6 3j0a_A TOLL-like receptor 5; m 100.0 7.6E-57 2.6E-61 561.2 44.0 510 31-561 23-564 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-57 5.5E-62 549.4 35.7 504 37-562 16-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.2E-57 7.5E-62 548.3 34.4 495 32-539 57-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-56 5.5E-61 558.3 38.1 525 35-585 7-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-56 1.2E-60 537.6 31.0 503 18-539 5-563 (606)
11 4eco_A Uncharacterized protein 100.0 1.3E-56 4.4E-61 540.5 20.5 485 6-558 53-601 (636)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-53 8.4E-58 506.6 28.6 498 18-562 2-515 (549)
13 4ecn_A Leucine-rich repeat pro 100.0 3.5E-53 1.2E-57 517.1 27.3 484 12-534 285-864 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 3.3E-52 1.1E-56 499.6 32.8 506 37-563 12-537 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 2.1E-51 7.2E-56 492.6 30.9 493 31-540 27-537 (570)
16 4asz_A BDNF/NT-3 growth factor 100.0 7.3E-52 2.5E-56 445.3 17.3 271 663-975 13-291 (299)
17 4aoj_A High affinity nerve gro 100.0 2.3E-51 7.7E-56 447.9 20.4 270 663-974 41-320 (329)
18 3omv_A RAF proto-oncogene seri 100.0 4.2E-51 1.5E-55 438.8 19.9 266 660-976 33-303 (307)
19 4gt4_A Tyrosine-protein kinase 100.0 1.3E-50 4.6E-55 437.5 18.2 266 664-971 27-304 (308)
20 4b9d_A Serine/threonine-protei 100.0 7.6E-51 2.6E-55 442.7 16.3 252 662-966 23-276 (350)
21 4fih_A Serine/threonine-protei 100.0 2.1E-50 7.3E-55 438.5 18.3 250 663-966 74-323 (346)
22 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-49 5.6E-54 473.6 27.2 485 18-539 10-515 (549)
23 4g3f_A NF-kappa-beta-inducing 100.0 1.9E-50 6.5E-55 437.7 17.1 270 662-985 57-331 (336)
24 4g8a_A TOLL-like receptor 4; l 100.0 8.7E-49 3E-53 476.6 33.8 557 4-582 7-582 (635)
25 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-49 4.3E-54 470.9 25.4 465 35-562 3-486 (520)
26 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.4E-50 8E-55 431.4 15.0 250 663-966 32-284 (311)
27 3hyh_A Carbon catabolite-derep 100.0 1.5E-49 5.3E-54 419.6 19.5 246 663-966 13-262 (275)
28 3hmm_A TGF-beta receptor type- 100.0 2E-49 7E-54 430.0 19.0 280 663-974 3-298 (303)
29 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-48 1.2E-52 471.4 31.5 541 5-562 16-585 (635)
30 4fie_A Serine/threonine-protei 100.0 3.4E-49 1.2E-53 439.7 19.8 251 662-966 150-400 (423)
31 4ase_A Vascular endothelial gr 100.0 1.8E-49 6.1E-54 436.2 17.0 279 656-974 57-348 (353)
32 3fpq_A Serine/threonine-protei 100.0 5.8E-49 2E-53 419.2 19.7 249 666-966 29-282 (290)
33 4ecn_A Leucine-rich repeat pro 100.0 4.3E-48 1.5E-52 472.2 25.8 463 56-556 323-863 (876)
34 4eco_A Uncharacterized protein 100.0 5.2E-48 1.8E-52 465.5 24.5 469 56-582 81-602 (636)
35 3ubd_A Ribosomal protein S6 ki 100.0 5.7E-49 1.9E-53 421.1 11.8 244 662-961 23-271 (304)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-46 3.7E-51 449.4 27.3 462 35-562 34-515 (562)
37 2z7x_B TOLL-like receptor 1, v 100.0 3.2E-47 1.1E-51 450.3 19.8 465 59-584 3-485 (520)
38 4g31_A Eukaryotic translation 100.0 2.6E-47 8.9E-52 410.9 16.5 259 663-966 5-279 (299)
39 4b99_A Mitogen-activated prote 100.0 9.8E-47 3.3E-51 422.1 18.8 277 662-966 53-344 (398)
40 4f9c_A Cell division cycle 7-r 100.0 1.4E-44 4.9E-49 400.5 17.9 202 660-885 18-249 (361)
41 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-43 4.8E-48 422.5 24.3 465 57-584 32-514 (562)
42 3v5w_A G-protein coupled recep 100.0 7.9E-44 2.7E-48 413.4 18.1 250 662-966 188-449 (689)
43 3uto_A Twitchin; kinase, muscl 100.0 1.5E-43 5E-48 416.7 19.2 253 662-966 156-410 (573)
44 1jl5_A Outer protein YOPM; leu 100.0 1.4E-42 4.6E-47 399.6 24.7 402 79-562 10-416 (454)
45 3v47_A TOLL-like receptor 5B a 100.0 2.4E-42 8.3E-47 401.5 25.9 378 40-441 18-412 (455)
46 3s95_A LIMK-1, LIM domain kina 100.0 2.9E-42 9.9E-47 378.8 19.7 268 662-977 9-286 (310)
47 2qkw_B Protein kinase; three-h 100.0 6.9E-42 2.4E-46 377.7 22.6 286 652-973 28-315 (321)
48 1jl5_A Outer protein YOPM; leu 100.0 7.6E-42 2.6E-46 393.3 21.9 420 33-540 12-435 (454)
49 3v47_A TOLL-like receptor 5B a 100.0 2.7E-41 9.2E-46 392.7 25.9 391 59-515 13-413 (455)
50 3fxz_A Serine/threonine-protei 100.0 1.8E-41 6.2E-46 369.3 20.6 251 662-966 19-269 (297)
51 3uim_A Brassinosteroid insensi 100.0 5.1E-42 1.8E-46 379.8 16.2 289 648-970 15-308 (326)
52 3q4u_A Activin receptor type-1 100.0 2.5E-41 8.6E-46 369.9 20.4 268 662-971 7-300 (301)
53 3p86_A Serine/threonine-protei 100.0 3.6E-41 1.2E-45 368.8 20.1 267 659-978 33-303 (309)
54 3fe3_A MAP/microtubule affinit 100.0 2.2E-41 7.4E-46 372.9 17.7 250 661-967 13-265 (328)
55 3zgw_A Maternal embryonic leuc 100.0 3.3E-41 1.1E-45 373.4 17.9 252 661-967 8-261 (347)
56 3ugc_A Tyrosine-protein kinase 100.0 1.9E-41 6.5E-46 369.5 15.7 282 662-976 9-294 (295)
57 3kul_A Ephrin type-A receptor 100.0 5.4E-41 1.9E-45 370.4 17.7 263 662-975 48-315 (325)
58 2c30_A Serine/threonine-protei 100.0 2.5E-40 8.6E-45 364.4 22.6 263 651-967 23-295 (321)
59 2psq_A Fibroblast growth facto 100.0 1.6E-40 5.5E-45 373.1 20.2 272 662-975 80-366 (370)
60 3cbl_A C-FES, proto-oncogene t 100.0 3.8E-41 1.3E-45 379.7 14.9 263 660-974 111-375 (377)
61 1o6l_A RAC-beta serine/threoni 100.0 1.9E-40 6.5E-45 366.3 20.1 250 662-967 4-261 (337)
62 3soc_A Activin receptor type-2 100.0 1E-40 3.5E-45 368.1 16.9 284 660-974 21-319 (322)
63 2yab_A Death-associated protei 100.0 2.4E-40 8.3E-45 368.8 19.9 252 662-966 11-272 (361)
64 3op5_A Serine/threonine-protei 100.0 2E-40 6.8E-45 372.5 19.3 281 661-978 33-334 (364)
65 1tki_A Titin; serine kinase, m 100.0 2.2E-40 7.5E-45 364.5 18.7 253 662-967 4-258 (321)
66 4hcu_A Tyrosine-protein kinase 100.0 2.2E-40 7.4E-45 355.9 18.0 259 661-974 8-267 (269)
67 2qol_A Ephrin receptor; recept 100.0 1.8E-40 6.3E-45 372.8 18.0 263 662-975 44-311 (373)
68 2nru_A Interleukin-1 receptor- 100.0 1.7E-39 5.8E-44 356.4 25.0 284 649-973 11-306 (307)
69 3tki_A Serine/threonine-protei 100.0 2.1E-40 7E-45 365.3 17.7 255 662-967 6-262 (323)
70 4aw2_A Serine/threonine-protei 100.0 7.7E-41 2.6E-45 381.0 14.3 264 655-967 66-339 (437)
71 3vhe_A Vascular endothelial gr 100.0 2.4E-40 8.1E-45 371.9 17.4 283 653-975 12-357 (359)
72 4eqm_A Protein kinase; transfe 100.0 2.1E-40 7.1E-45 360.6 16.4 262 662-973 10-275 (294)
73 4fr4_A YANK1, serine/threonine 100.0 7.8E-40 2.7E-44 366.6 20.8 251 662-966 14-271 (384)
74 3lb7_A RAF proto-oncogene seri 100.0 3.2E-40 1.1E-44 361.1 17.3 265 661-976 34-303 (307)
75 2y0a_A Death-associated protei 100.0 5.9E-40 2E-44 362.3 19.3 251 663-966 11-271 (326)
76 1csn_A Casein kinase-1; phosph 100.0 8.2E-40 2.8E-44 357.3 20.2 271 662-978 9-288 (298)
77 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.7E-40 5.8E-45 366.2 14.6 248 662-967 8-259 (336)
78 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-39 1.2E-43 371.6 26.1 368 42-494 28-395 (457)
79 3sxs_A Cytoplasmic tyrosine-pr 100.0 3.5E-40 1.2E-44 354.2 16.3 259 661-974 6-265 (268)
80 4dc2_A Protein kinase C IOTA t 100.0 5.7E-40 1.9E-44 368.8 18.7 251 661-961 50-307 (396)
81 3txo_A PKC-L, NPKC-ETA, protei 100.0 2E-40 6.8E-45 368.7 14.7 250 661-966 21-280 (353)
82 3poz_A Epidermal growth factor 100.0 2.9E-40 9.9E-45 365.3 15.9 261 662-975 14-280 (327)
83 1kob_A Twitchin; kinase, intra 100.0 8.3E-40 2.8E-44 367.8 19.9 253 662-966 50-304 (387)
84 3gen_A Tyrosine-protein kinase 100.0 3.7E-40 1.3E-44 357.0 16.4 262 658-974 19-281 (283)
85 4f0f_A Serine/threonine-protei 100.0 9.2E-40 3.1E-44 354.7 19.4 254 662-971 18-287 (287)
86 1fot_A TPK1 delta, CAMP-depend 100.0 9.5E-40 3.2E-44 358.2 19.3 246 662-966 5-258 (318)
87 1k9a_A Carboxyl-terminal SRC k 100.0 8.3E-40 2.8E-44 377.2 19.6 255 661-974 191-446 (450)
88 2izr_A Casein kinase I isoform 100.0 1.1E-39 3.6E-44 361.6 19.3 268 662-976 8-284 (330)
89 2zv2_A Calcium/calmodulin-depe 100.0 1.9E-39 6.4E-44 354.2 20.8 252 662-966 12-292 (298)
90 2bdw_A Hypothetical protein K1 100.0 8.8E-40 3E-44 365.7 18.4 253 662-967 28-285 (362)
91 3l9p_A Anaplastic lymphoma kin 100.0 4.1E-40 1.4E-44 369.6 15.7 268 662-975 70-347 (367)
92 1xjd_A Protein kinase C, theta 100.0 4.3E-40 1.5E-44 364.4 15.7 250 660-965 14-268 (345)
93 1mp8_A Focal adhesion kinase 1 100.0 8.8E-40 3E-44 353.6 16.9 261 661-975 13-278 (281)
94 3lxl_A Tyrosine-protein kinase 100.0 5.2E-40 1.8E-44 363.7 15.3 282 662-977 22-307 (327)
95 3bz5_A Internalin-J, INLJ; leu 100.0 8.1E-39 2.8E-43 368.4 25.8 365 67-563 29-393 (457)
96 4hgt_A Casein kinase I isoform 100.0 2.5E-39 8.4E-44 353.2 20.2 273 661-980 7-287 (296)
97 4euu_A Serine/threonine-protei 100.0 3.1E-39 1E-43 356.1 21.2 285 662-971 8-307 (319)
98 3c1x_A Hepatocyte growth facto 100.0 5.2E-40 1.8E-44 368.5 15.2 265 664-977 90-359 (373)
99 3mdy_A Bone morphogenetic prot 100.0 4.4E-39 1.5E-43 358.2 22.5 277 660-975 34-333 (337)
100 3soa_A Calcium/calmodulin-depe 100.0 1.6E-39 5.3E-44 371.9 19.2 254 662-967 10-268 (444)
101 3a8x_A Protein kinase C IOTA t 100.0 1.8E-39 6.2E-44 360.3 19.0 253 662-961 8-264 (345)
102 3g33_A Cell division protein k 100.0 1.5E-39 5.2E-44 356.8 18.2 282 661-966 7-296 (308)
103 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.5E-39 5.2E-44 361.4 18.3 246 662-966 40-293 (350)
104 3kfa_A Tyrosine-protein kinase 100.0 6.1E-40 2.1E-44 356.4 14.7 265 658-975 8-273 (288)
105 3f66_A Hepatocyte growth facto 100.0 1.4E-39 4.7E-44 355.4 17.2 267 662-977 24-295 (298)
106 3v8s_A RHO-associated protein 100.0 7.9E-40 2.7E-44 369.9 15.7 260 656-967 62-330 (410)
107 3dtc_A Mitogen-activated prote 100.0 1.7E-39 5.7E-44 349.5 17.5 254 662-971 6-271 (271)
108 2eva_A TAK1 kinase - TAB1 chim 100.0 2.5E-39 8.6E-44 354.4 19.1 260 662-977 7-267 (307)
109 2y94_A 5'-AMP-activated protei 100.0 2.9E-39 9.9E-44 371.8 20.4 248 662-966 15-266 (476)
110 3niz_A Rhodanese family protei 100.0 4.2E-39 1.4E-43 353.1 20.8 277 662-966 20-300 (311)
111 3uzp_A CKI-delta, CKID, casein 100.0 4.8E-39 1.7E-43 350.8 21.0 270 661-977 7-284 (296)
112 3o0g_A Cell division protein k 100.0 1.7E-39 5.8E-44 353.4 17.3 269 663-966 2-282 (292)
113 1qcf_A Haematopoetic cell kina 100.0 5.3E-40 1.8E-44 379.6 14.1 262 659-975 184-446 (454)
114 2i0e_A Protein kinase C-beta I 100.0 1.6E-39 5.5E-44 361.0 17.3 250 661-966 18-276 (353)
115 3c0i_A Peripheral plasma membr 100.0 7.8E-40 2.7E-44 365.1 14.8 255 663-966 24-286 (351)
116 3kex_A Receptor tyrosine-prote 100.0 8.6E-40 2.9E-44 361.3 14.8 261 662-975 12-278 (325)
117 2eue_A Carbon catabolite derep 100.0 2.8E-39 9.7E-44 348.4 18.6 248 662-967 12-263 (275)
118 1luf_A Muscle-specific tyrosin 100.0 7.3E-40 2.5E-44 365.5 14.4 276 659-976 43-338 (343)
119 3rp9_A Mitogen-activated prote 100.0 1.7E-39 5.7E-44 376.8 17.8 203 662-879 52-280 (458)
120 2w4o_A Calcium/calmodulin-depe 100.0 3.2E-39 1.1E-43 359.6 19.1 252 661-966 51-305 (349)
121 2ivs_A Proto-oncogene tyrosine 100.0 2.3E-39 7.8E-44 356.7 17.6 272 661-974 21-312 (314)
122 4fvq_A Tyrosine-protein kinase 100.0 7.4E-40 2.5E-44 355.9 13.4 253 662-974 7-276 (289)
123 1ogq_A PGIP-2, polygalacturona 100.0 7.5E-40 2.6E-44 358.8 13.6 276 4-284 19-302 (313)
124 3qup_A Tyrosine-protein kinase 100.0 6.7E-40 2.3E-44 362.3 13.1 274 659-974 19-299 (323)
125 2x4f_A Myosin light chain kina 100.0 2.6E-39 8.7E-44 363.2 18.0 252 668-971 94-349 (373)
126 3ork_A Serine/threonine protei 100.0 5.5E-40 1.9E-44 360.6 12.2 267 662-973 11-281 (311)
127 1nxk_A MAP kinase-activated pr 100.0 4.9E-39 1.7E-43 364.5 20.2 256 662-967 60-322 (400)
128 3brb_A Proto-oncogene tyrosine 100.0 2.1E-39 7.1E-44 356.6 16.6 279 657-977 28-312 (313)
129 4e5w_A Tyrosine-protein kinase 100.0 1.8E-39 6.1E-44 355.3 15.8 277 662-972 20-301 (302)
130 3tt0_A Basic fibroblast growth 100.0 5.2E-39 1.8E-43 363.1 20.0 275 661-977 67-356 (382)
131 1qpc_A LCK kinase; alpha beta 100.0 2.4E-39 8.3E-44 349.8 16.5 266 659-979 9-275 (279)
132 1opk_A P150, C-ABL, proto-onco 100.0 1.3E-39 4.6E-44 379.6 15.4 259 661-972 218-477 (495)
133 1rjb_A FL cytokine receptor; k 100.0 4E-39 1.4E-43 359.5 18.5 277 660-977 42-338 (344)
134 3qd2_B Eukaryotic translation 100.0 4.3E-39 1.5E-43 357.5 18.6 260 662-966 5-325 (332)
135 3kmu_A ILK, integrin-linked ki 100.0 2.8E-39 9.7E-44 347.8 16.7 255 662-973 9-270 (271)
136 3t9t_A Tyrosine-protein kinase 100.0 3.1E-39 1.1E-43 346.6 16.7 259 661-974 6-265 (267)
137 3ttj_A Mitogen-activated prote 100.0 6.4E-39 2.2E-43 370.0 20.5 203 661-885 60-265 (464)
138 1xbb_A Tyrosine-protein kinase 100.0 2.3E-39 8E-44 352.1 15.9 267 658-977 11-283 (291)
139 3fdn_A Serine/threonine-protei 100.0 4.3E-39 1.5E-43 347.8 17.9 266 661-985 7-275 (279)
140 3n9x_A Phosphotransferase; mal 100.0 9.4E-39 3.2E-43 366.6 21.7 209 661-884 24-253 (432)
141 3pls_A Macrophage-stimulating 100.0 6.1E-39 2.1E-43 350.4 19.1 266 664-977 22-291 (298)
142 3lzb_A Epidermal growth factor 100.0 1.9E-39 6.7E-44 358.3 15.3 262 662-976 14-281 (327)
143 3dls_A PAS domain-containing s 100.0 2E-39 7E-44 359.0 15.4 243 662-967 23-275 (335)
144 3hko_A Calcium/calmodulin-depe 100.0 4.2E-39 1.4E-43 359.6 17.9 272 658-966 21-330 (345)
145 2v62_A Serine/threonine-protei 100.0 2.7E-39 9.4E-44 360.4 16.2 273 662-972 36-327 (345)
146 3gni_B Strad alpha; kinase fol 100.0 4E-39 1.4E-43 365.6 17.8 286 660-967 22-334 (389)
147 2pmi_A Negative RE, cyclin-dep 100.0 5.2E-39 1.8E-43 353.6 18.2 286 661-966 3-293 (317)
148 1mqb_A Ephrin type-A receptor 100.0 8E-39 2.7E-43 354.5 19.8 265 662-977 43-313 (333)
149 3f3z_A Calcium/calmodulin-depe 100.0 7.6E-39 2.6E-43 345.5 19.0 252 662-967 8-262 (277)
150 1b6c_B TGF-B superfamily recep 100.0 1.2E-38 4.1E-43 355.5 21.1 275 659-975 38-338 (342)
151 2a2a_A Death-associated protei 100.0 6.1E-39 2.1E-43 354.0 18.5 252 662-966 11-272 (321)
152 3og7_A AKAP9-BRAF fusion prote 100.0 2E-39 6.7E-44 352.3 14.3 262 660-972 21-287 (289)
153 2acx_A G protein-coupled recep 100.0 4.7E-39 1.6E-43 374.3 18.3 255 661-966 182-444 (576)
154 3a62_A Ribosomal protein S6 ki 100.0 6.3E-39 2.1E-43 354.3 18.4 249 662-966 16-276 (327)
155 3cc6_A Protein tyrosine kinase 100.0 3.4E-39 1.2E-43 349.0 16.0 262 661-976 10-276 (281)
156 3uc3_A Serine/threonine-protei 100.0 4.4E-39 1.5E-43 360.1 17.3 255 661-967 18-275 (361)
157 1ob3_A PFPK5, cell division co 100.0 5E-39 1.7E-43 348.9 17.3 271 663-966 2-280 (288)
158 1u59_A Tyrosine-protein kinase 100.0 1E-38 3.5E-43 346.4 19.6 265 662-978 8-277 (287)
159 2w1i_A JAK2; chromosomal rearr 100.0 5.2E-39 1.8E-43 355.4 17.6 280 662-976 40-325 (326)
160 1t46_A HOMO sapiens V-KIT hard 100.0 6E-39 2.1E-43 353.1 17.9 274 661-975 21-309 (313)
161 1byg_A CSK, protein (C-termina 100.0 2.9E-39 9.8E-44 349.0 14.8 256 661-975 19-275 (278)
162 2r5t_A Serine/threonine-protei 100.0 2.8E-39 9.6E-44 361.6 15.1 249 662-966 37-289 (373)
163 3kk8_A Calcium/calmodulin depe 100.0 8E-39 2.7E-43 346.8 18.2 253 662-967 5-262 (284)
164 2vd5_A DMPK protein; serine/th 100.0 2.1E-39 7.2E-44 366.6 14.1 263 654-966 52-327 (412)
165 1o6v_A Internalin A; bacterial 100.0 7.1E-38 2.4E-42 364.0 27.4 344 55-437 45-388 (466)
166 2buj_A Serine/threonine-protei 100.0 1.9E-39 6.4E-44 357.8 13.4 272 661-973 27-306 (317)
167 3lxp_A Non-receptor tyrosine-p 100.0 1.9E-39 6.3E-44 357.5 13.2 276 665-977 33-314 (318)
168 3g2f_A Bone morphogenetic prot 100.0 7E-39 2.4E-43 356.3 17.8 289 661-978 11-323 (336)
169 3gxj_A TGF-beta receptor type- 100.0 9.8E-41 3.3E-45 365.6 2.8 271 662-974 2-298 (303)
170 2pvf_A Fibroblast growth facto 100.0 1.1E-38 3.7E-43 354.1 19.1 275 661-977 33-322 (334)
171 3llt_A Serine/threonine kinase 100.0 4.1E-39 1.4E-43 361.8 15.9 212 648-885 20-261 (360)
172 2yex_A Serine/threonine-protei 100.0 1.4E-38 4.6E-43 343.4 19.3 254 662-966 6-261 (276)
173 2xir_A Vascular endothelial gr 100.0 6.9E-39 2.4E-43 353.2 17.2 282 654-975 18-312 (316)
174 3nsz_A CK II alpha, casein kin 100.0 1.4E-38 4.7E-43 353.0 19.6 277 662-966 35-319 (330)
175 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 2.1E-39 7.1E-44 374.1 13.2 263 660-977 181-444 (452)
176 3p1a_A MYT1 kinase, membrane-a 100.0 7.2E-39 2.5E-43 351.4 16.7 245 663-966 57-304 (311)
177 3oz6_A Mitogen-activated prote 100.0 1.5E-38 5.3E-43 360.4 19.6 280 661-967 7-329 (388)
178 3cok_A Serine/threonine-protei 100.0 7.1E-39 2.4E-43 346.0 16.0 250 662-966 10-262 (278)
179 4agu_A Cyclin-dependent kinase 100.0 6.5E-39 2.2E-43 352.4 15.9 270 663-966 3-284 (311)
180 2a19_B Interferon-induced, dou 100.0 5.5E-39 1.9E-43 348.1 15.1 256 662-975 10-276 (284)
181 1fvr_A Tyrosine-protein kinase 100.0 8.6E-39 3E-43 353.9 17.0 275 662-981 24-308 (327)
182 2h34_A Serine/threonine-protei 100.0 1.4E-38 4.7E-43 349.0 18.3 261 662-974 33-297 (309)
183 2ozo_A Tyrosine-protein kinase 100.0 1.6E-38 5.6E-43 379.1 20.2 262 664-977 336-602 (613)
184 2wqm_A Serine/threonine-protei 100.0 1.2E-38 4.1E-43 350.1 17.6 269 662-978 31-302 (310)
185 3ll6_A Cyclin G-associated kin 100.0 1.1E-38 3.9E-43 354.9 17.5 274 661-981 26-316 (337)
186 4ejn_A RAC-alpha serine/threon 100.0 3.6E-39 1.2E-43 372.2 13.9 249 662-966 147-404 (446)
187 4eut_A Serine/threonine-protei 100.0 1E-38 3.4E-43 362.4 17.3 288 662-974 8-310 (396)
188 1cm8_A Phosphorylated MAP kina 100.0 9.9E-39 3.4E-43 358.1 16.7 280 662-966 24-307 (367)
189 3qyz_A Mitogen-activated prote 100.0 1.2E-38 4.1E-43 358.0 17.3 290 658-966 22-313 (364)
190 2ac3_A MAP kinase-interacting 100.0 9.3E-39 3.2E-43 352.0 16.1 267 662-966 11-295 (316)
191 3lm5_A Serine/threonine-protei 100.0 1.6E-38 5.4E-43 351.4 18.0 264 653-967 18-288 (327)
192 3i6u_A CDS1, serine/threonine- 100.0 1.5E-38 5.2E-43 363.1 18.1 253 661-966 133-399 (419)
193 1o6v_A Internalin A; bacterial 100.0 3.6E-37 1.2E-41 358.1 29.9 345 78-462 44-388 (466)
194 2vgo_A Serine/threonine-protei 100.0 2.4E-38 8.1E-43 343.0 18.7 248 662-967 13-263 (284)
195 3kn6_A Ribosomal protein S6 ki 100.0 5.6E-39 1.9E-43 354.1 13.8 249 668-966 16-270 (325)
196 2i1m_A Macrophage colony-stimu 100.0 1.8E-38 6.1E-43 352.5 17.9 279 658-977 41-330 (333)
197 3c4z_A Rhodopsin kinase; Ser/T 100.0 2.5E-38 8.6E-43 367.7 19.7 257 662-966 184-448 (543)
198 1u5q_A Serine/threonine protei 100.0 1.1E-38 3.7E-43 354.8 15.8 247 663-967 54-306 (348)
199 3mi9_A Cell division protein k 100.0 3.8E-38 1.3E-42 352.4 20.2 283 662-966 16-311 (351)
200 3bhy_A Death-associated protei 100.0 1.9E-38 6.4E-43 343.7 16.9 259 663-974 5-275 (283)
201 2rku_A Serine/threonine-protei 100.0 2.4E-38 8.3E-43 344.8 17.8 250 662-967 14-266 (294)
202 1t4h_A Serine/threonine-protei 100.0 1.8E-38 6.1E-43 345.1 16.6 252 663-966 26-282 (290)
203 2qr7_A Ribosomal protein S6 ki 100.0 1.1E-38 3.6E-43 353.7 14.9 253 662-967 21-278 (342)
204 2jam_A Calcium/calmodulin-depe 100.0 1.7E-38 5.8E-43 347.7 16.2 251 662-966 8-261 (304)
205 1p4o_A Insulin-like growth fac 100.0 4.4E-39 1.5E-43 355.6 11.7 277 654-973 16-299 (322)
206 2h6d_A 5'-AMP-activated protei 100.0 3E-38 1E-42 340.7 17.8 249 662-967 10-262 (276)
207 3is5_A Calcium-dependent prote 100.0 1.2E-38 4.1E-43 345.2 14.7 253 663-966 22-278 (285)
208 2fst_X Mitogen-activated prote 100.0 1E-38 3.5E-43 357.4 14.5 282 661-967 27-312 (367)
209 4fl3_A Tyrosine-protein kinase 100.0 2.3E-38 8E-43 378.5 18.3 254 669-975 375-633 (635)
210 3mtl_A Cell division protein k 100.0 6E-39 2E-43 354.3 11.9 277 663-966 2-281 (324)
211 2jii_A Serine/threonine-protei 100.0 9.4E-39 3.2E-43 357.2 13.7 272 662-977 41-340 (352)
212 2owb_A Serine/threonine-protei 100.0 2.6E-38 8.8E-43 351.0 17.0 250 662-967 40-292 (335)
213 3sv0_A Casein kinase I-like; t 100.0 4.8E-38 1.6E-42 362.3 19.6 269 662-976 6-281 (483)
214 3a7i_A MST3 kinase, serine/thr 100.0 9.3E-38 3.2E-42 341.7 20.6 251 662-968 21-272 (303)
215 2yfx_A Tyrosine-protein kinase 100.0 3.4E-38 1.2E-42 349.1 17.1 268 662-975 29-306 (327)
216 2id5_A Lingo-1, leucine rich r 100.0 3.1E-37 1.1E-41 360.4 25.9 329 24-438 6-334 (477)
217 2w5a_A Serine/threonine-protei 100.0 1.4E-38 4.8E-43 343.9 12.9 258 662-968 5-269 (279)
218 3byv_A Rhoptry kinase; malaria 100.0 3.5E-39 1.2E-43 364.1 8.1 262 662-976 72-371 (377)
219 2id5_A Lingo-1, leucine rich r 100.0 1.8E-37 6E-42 362.5 22.7 347 203-585 14-361 (477)
220 2j7t_A Serine/threonine-protei 100.0 3E-38 1E-42 345.5 15.2 254 661-966 17-275 (302)
221 2clq_A Mitogen-activated prote 100.0 9.9E-38 3.4E-42 340.2 19.2 254 663-966 22-278 (295)
222 2y7j_A Phosphorylase B kinase 100.0 6.1E-38 2.1E-42 351.6 17.6 254 660-966 91-359 (365)
223 3dbq_A Dual specificity protei 100.0 3.5E-38 1.2E-42 351.1 15.6 252 662-967 8-274 (343)
224 2xrw_A Mitogen-activated prote 100.0 1.2E-37 4.3E-42 350.3 20.1 202 662-885 24-228 (371)
225 4aaa_A Cyclin-dependent kinase 100.0 2E-38 6.8E-43 351.5 13.4 275 662-967 24-307 (331)
226 2h8h_A Proto-oncogene tyrosine 100.0 8.7E-39 3E-43 376.2 11.1 262 660-976 264-526 (535)
227 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.9E-38 6.6E-43 351.0 13.2 279 660-966 31-318 (329)
228 1ua2_A CAK, cell division prot 100.0 4.2E-38 1.4E-42 350.9 16.0 276 661-967 8-292 (346)
229 1x8b_A WEE1HU, WEE1-like prote 100.0 6.3E-38 2.2E-42 340.7 16.6 247 662-966 10-279 (289)
230 3o6n_A APL1; leucine-rich repe 100.0 3.8E-37 1.3E-41 349.6 23.4 175 10-189 3-178 (390)
231 3pfq_A PKC-B, PKC-beta, protei 100.0 9.7E-38 3.3E-42 375.7 19.6 250 661-966 339-597 (674)
232 3eqc_A Dual specificity mitoge 100.0 3.8E-38 1.3E-42 353.7 14.7 280 662-967 32-325 (360)
233 3mwu_A Calmodulin-domain prote 100.0 6.9E-38 2.4E-42 365.7 17.4 252 662-967 21-277 (486)
234 3lij_A Calcium/calmodulin depe 100.0 7.2E-38 2.5E-42 366.1 17.5 256 662-971 36-298 (494)
235 1vzo_A Ribosomal protein S6 ki 100.0 3.5E-38 1.2E-42 352.4 14.0 255 662-967 53-322 (355)
236 2zmd_A Dual specificity protei 100.0 6.8E-38 2.3E-42 354.1 16.4 251 663-967 56-321 (390)
237 3com_A Serine/threonine-protei 100.0 1.5E-37 5E-42 342.1 18.6 252 661-966 27-278 (314)
238 2x7f_A TRAF2 and NCK-interacti 100.0 6.3E-38 2.2E-42 347.0 15.7 268 651-966 12-286 (326)
239 3nyv_A Calmodulin-domain prote 100.0 4.3E-38 1.5E-42 367.7 15.1 252 662-967 25-282 (484)
240 3pg1_A Mitogen-activated prote 100.0 5.8E-38 2E-42 352.7 15.6 280 655-967 14-317 (362)
241 3eb0_A Putative uncharacterize 100.0 9.5E-38 3.3E-42 353.1 17.4 282 659-973 3-330 (383)
242 2wtk_C Serine/threonine-protei 100.0 3.3E-37 1.1E-41 337.9 21.1 255 662-967 4-264 (305)
243 2ycf_A Serine/threonine-protei 100.0 9.8E-38 3.4E-42 344.6 16.4 252 662-966 9-274 (322)
244 1phk_A Phosphorylase kinase; g 100.0 1.3E-37 4.5E-42 339.7 17.2 253 661-966 15-283 (298)
245 2b9h_A MAP kinase FUS3, mitoge 100.0 6.8E-38 2.3E-42 351.0 15.2 282 661-966 9-305 (353)
246 3q5i_A Protein kinase; CDPK, m 100.0 1.2E-37 4.1E-42 365.2 17.9 252 662-967 35-302 (504)
247 2i6l_A Mitogen-activated prote 100.0 1.9E-37 6.6E-42 342.3 18.5 283 662-966 10-305 (320)
248 4exu_A Mitogen-activated prote 100.0 1.1E-37 3.6E-42 350.9 16.4 277 662-967 41-324 (371)
249 1u46_A ACK-1, activated CDC42 100.0 5.5E-38 1.9E-42 341.5 13.1 262 662-974 17-285 (291)
250 3e7e_A HBUB1, BUB1A, mitotic c 100.0 2.2E-37 7.5E-42 348.0 18.2 260 660-975 62-341 (365)
251 2r3i_A Cell division protein k 100.0 1.4E-37 4.8E-42 339.7 16.1 272 662-966 2-283 (299)
252 3kvw_A DYRK2, dual specificity 100.0 2.4E-37 8.3E-42 354.0 18.3 198 662-885 96-301 (429)
253 1blx_A Cyclin-dependent kinase 100.0 3.3E-37 1.1E-41 341.3 18.2 276 660-966 8-296 (326)
254 2vwi_A Serine/threonine-protei 100.0 5.9E-38 2E-42 343.5 12.0 274 659-966 11-287 (303)
255 3q60_A ROP5B; pseudokinase, tr 100.0 4.1E-38 1.4E-42 354.7 10.8 269 662-975 61-363 (371)
256 1wak_A Serine/threonine-protei 100.0 4.3E-37 1.5E-41 350.6 19.2 281 662-966 36-391 (397)
257 3oja_B Anopheles plasmodium-re 100.0 1.2E-36 4.2E-41 364.4 24.0 183 3-190 2-185 (597)
258 3e3p_A Protein kinase, putativ 100.0 3.6E-37 1.2E-41 346.0 18.0 291 656-967 16-315 (360)
259 3fme_A Dual specificity mitoge 100.0 9E-38 3.1E-42 339.6 12.6 256 661-966 5-266 (290)
260 2pml_X PFPK7, Ser/Thr protein 100.0 4E-37 1.4E-41 343.9 18.0 267 662-966 30-322 (348)
261 3an0_A Dual specificity mitoge 100.0 2.2E-37 7.4E-42 344.8 15.2 257 660-966 48-310 (340)
262 2j0j_A Focal adhesion kinase 1 100.0 3.4E-37 1.2E-41 369.9 17.9 260 661-974 388-652 (656)
263 3coi_A Mitogen-activated prote 100.0 4.1E-37 1.4E-41 344.2 16.9 280 662-967 23-306 (353)
264 1j1b_A Glycogen synthase kinas 100.0 1.7E-37 5.7E-42 354.6 13.5 270 663-966 54-336 (420)
265 2wei_A Calmodulin-domain prote 100.0 4.4E-37 1.5E-41 333.4 15.6 252 662-967 21-277 (287)
266 1zy4_A Serine/threonine-protei 100.0 1.3E-36 4.5E-41 332.7 18.2 260 662-966 5-283 (303)
267 3fhr_A MAP kinase-activated pr 100.0 8.1E-37 2.8E-41 338.7 16.6 259 661-967 26-288 (336)
268 3a99_A Proto-oncogene serine/t 100.0 2.7E-37 9.3E-42 340.3 12.3 243 660-966 40-293 (320)
269 2y4i_B KSR2, HKSR2, kinase sup 100.0 1.6E-37 5.3E-42 342.8 10.1 268 655-975 25-304 (319)
270 4e7w_A Glycogen synthase kinas 100.0 5.9E-37 2E-41 347.2 14.4 277 662-967 39-322 (394)
271 1z57_A Dual specificity protei 100.0 1.7E-36 5.9E-41 337.6 17.7 277 662-966 13-328 (339)
272 2iwi_A Serine/threonine-protei 100.0 6.1E-37 2.1E-41 336.8 13.4 243 660-966 28-283 (312)
273 1q8y_A SR protein kinase; tran 100.0 1.7E-36 5.9E-41 342.4 16.2 281 662-966 18-333 (373)
274 3rgf_A Cyclin-dependent kinase 100.0 2.4E-36 8.1E-41 344.4 17.2 211 664-886 21-239 (405)
275 3cek_A Dual specificity protei 100.0 7.9E-37 2.7E-41 336.0 12.8 264 650-967 15-293 (313)
276 2vx3_A Dual specificity tyrosi 100.0 2.9E-36 9.9E-41 340.8 16.7 201 661-885 52-260 (382)
277 3aln_A Dual specificity mitoge 100.0 3.8E-36 1.3E-40 332.8 15.6 261 661-967 20-286 (327)
278 3qa8_A MGC80376 protein; kinas 100.0 2.2E-36 7.4E-41 354.7 14.0 286 662-973 13-309 (676)
279 2eu9_A Dual specificity protei 100.0 7.7E-36 2.6E-40 334.6 17.5 277 662-966 18-333 (355)
280 2dyl_A Dual specificity mitoge 100.0 3.2E-36 1.1E-40 332.1 13.0 253 662-967 24-284 (318)
281 2rio_A Serine/threonine-protei 100.0 5.1E-36 1.7E-40 343.9 14.5 259 663-966 15-295 (434)
282 3o6n_A APL1; leucine-rich repe 100.0 7.7E-35 2.6E-39 330.6 22.4 337 198-585 43-379 (390)
283 3oja_B Anopheles plasmodium-re 100.0 5.4E-35 1.9E-39 350.1 22.2 343 199-592 50-392 (597)
284 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-35 7.3E-40 323.4 16.1 255 329-586 51-310 (313)
285 3p23_A Serine/threonine-protei 100.0 1.1E-35 3.8E-40 339.7 13.0 252 661-966 22-283 (432)
286 3dzo_A Rhoptry kinase domain; 100.0 3.7E-35 1.3E-39 334.4 17.1 260 662-974 77-373 (413)
287 3uqc_A Probable conserved tran 100.0 4.9E-35 1.7E-39 315.9 14.9 235 662-975 30-267 (286)
288 2pzi_A Probable serine/threoni 100.0 9.7E-35 3.3E-39 352.6 16.8 249 662-975 79-330 (681)
289 3m2w_A MAP kinase-activated pr 100.0 1.9E-34 6.4E-39 314.6 15.7 237 662-967 16-257 (299)
290 4fmz_A Internalin; leucine ric 100.0 5.7E-33 2E-37 310.0 26.1 306 197-557 41-346 (347)
291 4fmz_A Internalin; leucine ric 100.0 4.1E-33 1.4E-37 311.2 24.8 308 51-413 39-346 (347)
292 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-32 4.5E-37 304.7 21.8 293 58-387 35-331 (332)
293 1xku_A Decorin; proteoglycan, 100.0 2.9E-32 9.8E-37 301.8 24.1 198 58-265 33-232 (330)
294 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-32 9.5E-37 302.1 23.9 288 201-532 34-331 (332)
295 2vuw_A Serine/threonine-protei 100.0 8.9E-34 3.1E-38 314.8 11.0 196 662-884 19-278 (336)
296 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.6E-36 297.2 24.9 289 201-532 32-330 (330)
297 1z7x_W Ribonuclease inhibitor; 100.0 7.3E-36 2.5E-40 347.5 -10.7 384 153-558 4-441 (461)
298 4fcg_A Uncharacterized protein 100.0 8.7E-33 3E-37 304.4 11.8 264 3-287 40-315 (328)
299 2z80_A TOLL-like receptor 2, v 100.0 9.4E-32 3.2E-36 300.6 15.1 286 11-317 21-315 (353)
300 1z7x_W Ribonuclease inhibitor; 100.0 1E-35 3.4E-40 346.4 -19.8 359 32-413 3-411 (461)
301 2z66_A Variable lymphocyte rec 100.0 2.2E-30 7.5E-35 283.5 15.0 254 16-286 3-261 (306)
302 3g06_A SSPH2 (leucine-rich rep 100.0 1.8E-29 6.1E-34 298.7 19.0 298 3-448 5-308 (622)
303 2z66_A Variable lymphocyte rec 100.0 1.6E-29 5.5E-34 276.5 14.5 250 306-561 10-265 (306)
304 3zyi_A Leucine-rich repeat-con 100.0 5.8E-29 2E-33 287.7 19.9 247 58-316 56-303 (452)
305 3ogk_B Coronatine-insensitive 100.0 8.5E-32 2.9E-36 323.8 -4.3 450 19-507 41-548 (592)
306 2z80_A TOLL-like receptor 2, v 100.0 9.8E-30 3.3E-34 284.2 12.3 280 57-417 32-318 (353)
307 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.6E-33 271.0 20.8 226 302-534 80-314 (328)
308 1wwl_A Monocyte differentiatio 100.0 1.1E-30 3.7E-35 286.2 2.3 268 10-287 21-310 (312)
309 1wwl_A Monocyte differentiatio 100.0 3.7E-30 1.3E-34 282.0 5.3 203 350-558 93-310 (312)
310 3zyj_A Leucine-rich repeat-con 100.0 2.6E-28 8.7E-33 281.2 19.9 254 24-316 38-292 (440)
311 3zyj_A Leucine-rich repeat-con 100.0 6.2E-28 2.1E-32 278.0 22.8 251 304-561 44-296 (440)
312 3zyi_A Leucine-rich repeat-con 100.0 6.6E-28 2.3E-32 278.8 22.6 251 304-561 55-307 (452)
313 3ogk_B Coronatine-insensitive 100.0 7.5E-31 2.6E-35 315.5 -2.3 397 150-554 110-548 (592)
314 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-28 7.2E-33 264.6 17.1 253 306-563 14-267 (285)
315 3oja_A Leucine-rich immune mol 100.0 1.3E-29 4.3E-34 294.5 7.1 215 329-557 35-250 (487)
316 1ozn_A Reticulon 4 receptor; N 100.0 4.6E-28 1.6E-32 261.9 16.7 252 330-585 13-266 (285)
317 2o6q_A Variable lymphocyte rec 100.0 1.2E-27 4.2E-32 256.1 18.0 220 16-240 1-220 (270)
318 3g06_A SSPH2 (leucine-rich rep 99.9 5.2E-27 1.8E-31 277.6 24.3 262 201-539 41-302 (622)
319 3o53_A Protein LRIM1, AGAP0063 99.9 6.3E-29 2.1E-33 272.8 4.4 158 400-562 120-281 (317)
320 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-28 5.5E-33 269.5 3.6 267 178-515 12-281 (317)
321 4azs_A Methyltransferase WBDD; 99.9 5.7E-28 1.9E-32 284.2 6.5 186 670-882 241-437 (569)
322 3oja_A Leucine-rich immune mol 99.9 2.8E-27 9.5E-32 274.8 10.6 235 302-552 33-270 (487)
323 2p1m_B Transport inhibitor res 99.9 2.1E-29 7.1E-34 303.2 -8.6 463 18-533 33-543 (594)
324 2z62_A TOLL-like receptor 4, v 99.9 1.8E-25 6.3E-30 240.3 19.0 228 308-562 12-242 (276)
325 2z62_A TOLL-like receptor 4, v 99.9 1.2E-25 4.2E-30 241.7 16.2 220 38-262 13-237 (276)
326 2p1m_B Transport inhibitor res 99.9 3.9E-29 1.3E-33 300.8 -17.9 230 329-561 290-548 (594)
327 3m19_A Variable lymphocyte rec 99.9 5.5E-25 1.9E-29 232.7 15.5 192 17-214 2-193 (251)
328 2o6q_A Variable lymphocyte rec 99.9 3.4E-24 1.1E-28 229.4 19.8 201 57-261 17-217 (270)
329 1p9a_G Platelet glycoprotein I 99.9 2.5E-24 8.5E-29 232.3 16.7 205 348-559 6-210 (290)
330 1p9a_G Platelet glycoprotein I 99.9 4.1E-24 1.4E-28 230.5 17.2 197 33-237 11-207 (290)
331 3rfs_A Internalin B, repeat mo 99.9 2.1E-24 7.3E-29 231.1 13.3 223 38-274 25-247 (272)
332 3rfs_A Internalin B, repeat mo 99.9 6.1E-24 2.1E-28 227.5 16.6 207 32-250 41-247 (272)
333 2xwt_C Thyrotropin receptor; s 99.9 1.9E-24 6.5E-29 226.8 11.8 185 47-238 25-218 (239)
334 3en9_A Glycoprotease, O-sialog 99.9 6.6E-25 2.3E-29 256.7 8.0 187 665-884 338-539 (540)
335 4glp_A Monocyte differentiatio 99.9 1.6E-24 5.4E-29 237.0 10.4 225 303-534 64-307 (310)
336 4glp_A Monocyte differentiatio 99.9 8.1E-24 2.8E-28 231.4 15.4 224 329-558 65-308 (310)
337 2xwt_C Thyrotropin receptor; s 99.9 4.7E-24 1.6E-28 223.8 12.8 214 15-235 5-236 (239)
338 4ay9_X Follicle-stimulating ho 99.9 1.6E-23 5.4E-28 233.1 13.6 245 18-283 7-256 (350)
339 3goz_A Leucine-rich repeat-con 99.9 5.7E-25 1.9E-29 246.1 1.6 269 36-324 2-305 (362)
340 3goz_A Leucine-rich repeat-con 99.9 9.3E-25 3.2E-29 244.4 1.1 81 61-141 3-93 (362)
341 3m19_A Variable lymphocyte rec 99.9 7.3E-23 2.5E-27 216.3 15.4 180 329-536 15-194 (251)
342 2ca6_A RAN GTPase-activating p 99.9 9.4E-25 3.2E-29 247.0 -0.8 232 329-561 33-320 (386)
343 2o6s_A Variable lymphocyte rec 99.9 2.2E-22 7.4E-27 206.2 15.6 160 15-189 2-161 (208)
344 2ca6_A RAN GTPase-activating p 99.9 9E-25 3.1E-29 247.2 -3.4 138 400-538 159-320 (386)
345 1h6u_A Internalin H; cell adhe 99.9 1.7E-22 5.9E-27 220.1 14.2 192 329-537 42-233 (308)
346 1zar_A RIO2 kinase; serine kin 99.9 1.7E-22 5.9E-27 216.2 12.9 152 656-856 83-252 (282)
347 2ast_B S-phase kinase-associat 99.9 2E-23 6.7E-28 231.6 5.0 252 304-563 48-312 (336)
348 1h6u_A Internalin H; cell adhe 99.9 7.3E-22 2.5E-26 215.2 16.8 192 301-510 39-230 (308)
349 3cvr_A Invasion plasmid antige 99.9 6.9E-23 2.4E-27 239.2 9.0 207 8-245 31-250 (571)
350 4ay9_X Follicle-stimulating ho 99.9 1.2E-21 4.2E-26 217.8 18.3 240 306-555 12-257 (350)
351 2ast_B S-phase kinase-associat 99.9 4.8E-23 1.7E-27 228.4 4.7 233 303-542 70-314 (336)
352 3cvr_A Invasion plasmid antige 99.9 1.7E-21 6E-26 227.3 14.1 189 304-522 60-255 (571)
353 2o6s_A Variable lymphocyte rec 99.8 4.6E-21 1.6E-25 196.3 14.8 160 353-520 29-188 (208)
354 3e6j_A Variable lymphocyte rec 99.8 5E-21 1.7E-25 198.8 15.0 163 13-191 12-174 (229)
355 2v9t_B SLIT homolog 2 protein 99.8 1.4E-20 4.9E-25 194.0 13.5 151 37-190 16-166 (220)
356 2xot_A Amphoterin-induced prot 99.8 2E-20 7E-25 208.8 11.4 175 36-213 22-202 (361)
357 2v70_A SLIT-2, SLIT homolog 2 99.8 5E-20 1.7E-24 189.8 13.3 153 36-191 15-168 (220)
358 2v9t_B SLIT homolog 2 protein 99.8 1.8E-19 6.1E-24 185.7 12.7 152 59-213 14-165 (220)
359 1h6t_A Internalin B; cell adhe 99.8 1.1E-19 3.7E-24 196.2 11.5 183 39-238 31-213 (291)
360 2xot_A Amphoterin-induced prot 99.8 1E-19 3.5E-24 203.2 11.3 177 59-239 21-203 (361)
361 1h6t_A Internalin B; cell adhe 99.8 2E-19 6.7E-24 194.1 13.1 190 330-536 26-215 (291)
362 1dce_A Protein (RAB geranylger 99.8 8.5E-22 2.9E-26 231.6 -7.4 207 77-310 346-567 (567)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-19 1.7E-23 182.4 13.9 153 380-536 15-168 (220)
364 1m9s_A Internalin B; cell inva 99.8 9.6E-20 3.3E-24 215.3 9.8 194 329-539 22-215 (605)
365 4b8c_D Glucose-repressible alc 99.8 4.7E-20 1.6E-24 223.8 6.9 246 10-286 152-404 (727)
366 1dce_A Protein (RAB geranylger 99.8 8.4E-22 2.9E-26 231.6 -8.8 119 426-550 443-566 (567)
367 1m9s_A Internalin B; cell inva 99.8 2.1E-19 7.1E-24 212.4 10.8 203 303-523 21-223 (605)
368 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4E-23 180.9 14.3 152 58-213 21-172 (229)
369 1zth_A RIO1 serine protein kin 99.8 7.5E-19 2.6E-23 185.8 11.1 138 664-829 48-219 (258)
370 4b8c_D Glucose-repressible alc 99.8 1.2E-19 4E-24 220.4 5.0 119 345-468 217-335 (727)
371 1xeu_A Internalin C; cellular 99.8 4.1E-19 1.4E-23 188.4 6.7 170 352-537 19-188 (263)
372 4ezg_A Putative uncharacterize 99.7 3.6E-18 1.2E-22 172.9 12.3 153 349-510 41-194 (197)
373 1xeu_A Internalin C; cellular 99.7 1.3E-18 4.5E-23 184.5 9.0 164 35-213 22-185 (263)
374 4ezg_A Putative uncharacterize 99.7 2.4E-18 8.4E-23 174.1 9.9 152 373-533 41-193 (197)
375 1w8a_A SLIT protein; signaling 99.7 1E-17 3.5E-22 168.6 11.0 87 452-538 57-143 (192)
376 1w8a_A SLIT protein; signaling 99.7 6.9E-18 2.4E-22 169.8 9.6 157 427-587 11-169 (192)
377 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4.1E-22 183.9 9.1 289 127-430 24-327 (329)
378 3sb4_A Hypothetical leucine ri 99.7 5.2E-17 1.8E-21 178.8 10.6 89 199-290 225-314 (329)
379 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 158.1 12.4 136 16-166 3-138 (177)
380 2wfh_A SLIT homolog 2 protein 99.7 2E-16 6.9E-21 158.9 11.9 126 36-165 14-139 (193)
381 4fdw_A Leucine rich hypothetic 99.7 6.1E-16 2.1E-20 173.7 16.2 242 55-316 112-358 (401)
382 2ell_A Acidic leucine-rich nuc 99.7 8.9E-17 3E-21 158.1 8.1 132 56-189 24-160 (168)
383 2wfh_A SLIT homolog 2 protein 99.7 3.2E-16 1.1E-20 157.5 11.8 128 59-190 13-140 (193)
384 4fdw_A Leucine rich hypothetic 99.6 2.2E-15 7.4E-20 169.2 18.4 256 43-316 123-383 (401)
385 2ell_A Acidic leucine-rich nuc 99.6 3.4E-16 1.2E-20 153.9 10.0 84 352-437 24-108 (168)
386 2je0_A Acidic leucine-rich nuc 99.6 1.7E-16 5.9E-21 152.5 6.3 127 56-184 17-148 (149)
387 2o6r_A Variable lymphocyte rec 99.6 1.7E-15 5.9E-20 150.2 12.2 132 58-192 9-140 (177)
388 2je0_A Acidic leucine-rich nuc 99.6 9.6E-16 3.3E-20 147.3 9.0 107 377-486 18-126 (149)
389 4gyi_A RIO2 kinase; protein ki 99.6 1.8E-15 6E-20 165.2 12.1 141 660-830 92-266 (397)
390 4fs7_A Uncharacterized protein 99.6 1.8E-14 6.2E-19 162.7 20.6 316 68-432 59-374 (394)
391 1ds9_A Outer arm dynein; leuci 99.6 5.4E-17 1.9E-21 164.3 -3.9 148 374-527 16-180 (198)
392 1a9n_A U2A', U2A'; complex (nu 99.6 2.1E-15 7.1E-20 149.4 6.2 134 50-189 13-153 (176)
393 4fs7_A Uncharacterized protein 99.5 9.8E-14 3.4E-18 156.6 19.0 335 44-429 59-393 (394)
394 1ds9_A Outer arm dynein; leuci 99.5 1.2E-16 4E-21 161.8 -4.6 153 351-511 17-186 (198)
395 1a9n_A U2A', U2A'; complex (nu 99.5 8.2E-15 2.8E-19 145.1 8.2 109 348-462 15-126 (176)
396 3g39_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 137.4 10.5 103 36-141 13-115 (170)
397 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 134.7 10.7 105 58-165 11-115 (170)
398 2r9u_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 135.5 9.8 104 35-141 15-118 (174)
399 2r9u_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 131.7 12.2 112 331-446 15-126 (174)
400 2ifg_A High affinity nerve gro 99.3 2.4E-12 8.1E-17 142.8 9.9 108 19-141 7-116 (347)
401 4gt6_A Cell surface protein; l 99.3 7.3E-11 2.5E-15 133.0 22.1 112 95-209 54-169 (394)
402 2ifg_A High affinity nerve gro 99.3 3.2E-12 1.1E-16 141.7 9.6 107 453-561 12-120 (347)
403 4gt6_A Cell surface protein; l 99.3 5.9E-11 2E-15 133.8 19.9 156 72-234 55-214 (394)
404 3un9_A NLR family member X1; l 99.3 6E-14 2E-18 155.9 -7.3 88 470-557 180-283 (372)
405 3un9_A NLR family member X1; l 99.2 1E-12 3.6E-17 145.9 -0.6 135 424-559 101-254 (372)
406 3tm0_A Aminoglycoside 3'-phosp 99.2 3.3E-11 1.1E-15 127.7 10.7 147 659-828 10-213 (263)
407 1nd4_A Aminoglycoside 3'-phosp 99.0 6E-10 2.1E-14 117.9 9.8 138 663-828 20-214 (264)
408 4h09_A Hypothetical leucine ri 99.0 8.4E-09 2.9E-13 115.5 19.1 128 50-185 40-167 (379)
409 4h09_A Hypothetical leucine ri 98.9 3.1E-08 1E-12 110.9 20.1 82 123-209 41-122 (379)
410 3dxp_A Putative acyl-COA dehyd 98.9 5.5E-09 1.9E-13 116.0 11.3 148 666-830 41-250 (359)
411 2ra8_A Uncharacterized protein 98.8 7.5E-10 2.6E-14 121.7 3.1 164 370-555 166-341 (362)
412 2ra8_A Uncharacterized protein 98.8 7E-10 2.4E-14 121.9 1.8 187 31-240 106-322 (362)
413 3sg8_A APH(2'')-ID; antibiotic 98.8 1.8E-09 6.3E-14 116.8 4.1 193 667-883 24-287 (304)
414 3rw6_A Nuclear RNA export fact 98.6 7.2E-10 2.5E-14 115.2 -5.2 151 19-182 77-257 (267)
415 3r70_A Aminoglycoside phosphot 98.5 3.9E-07 1.3E-11 99.1 10.9 138 664-830 38-239 (320)
416 1io0_A Tropomodulin; LRR prote 98.5 6.1E-09 2.1E-13 103.2 -3.4 72 46-117 26-106 (185)
417 3rw6_A Nuclear RNA export fact 98.4 5.6E-08 1.9E-12 101.0 1.6 65 472-538 169-237 (267)
418 4gkh_A Aminoglycoside 3'-phosp 98.4 1.1E-06 3.6E-11 93.2 11.4 137 669-828 30-223 (272)
419 3d1u_A Putative fructosamine-3 98.4 1.1E-06 3.8E-11 93.4 11.3 76 667-752 19-97 (288)
420 1io0_A Tropomodulin; LRR prote 98.3 2E-07 6.7E-12 92.3 2.4 18 372-389 32-50 (185)
421 3tdw_A Gentamicin resistance p 98.3 4.1E-06 1.4E-10 90.2 12.1 138 667-828 23-224 (306)
422 3ovc_A Hygromycin-B 4-O-kinase 98.2 8E-06 2.7E-10 90.0 12.2 78 665-753 43-122 (362)
423 3ats_A Putative uncharacterize 98.0 1.5E-05 5.1E-10 88.0 9.7 85 668-754 25-122 (357)
424 2olc_A MTR kinase, methylthior 97.9 2.3E-05 7.8E-10 88.0 10.6 76 668-750 35-120 (397)
425 3f7w_A Putative fructosamine-3 97.8 5.9E-05 2E-09 80.4 10.7 78 664-751 16-96 (288)
426 3e4g_A ATP synthase subunit S, 97.6 7.7E-06 2.6E-10 78.5 -0.5 83 80-162 61-149 (176)
427 2q83_A YTAA protein; 2635576, 97.6 0.00029 1E-08 77.1 12.1 152 669-827 38-251 (346)
428 3e4g_A ATP synthase subunit S, 97.5 2.2E-05 7.6E-10 75.3 1.1 82 130-211 63-150 (176)
429 3jr1_A Putative fructosamine-3 97.5 0.00044 1.5E-08 73.9 11.2 76 667-752 40-118 (312)
430 2pyw_A Uncharacterized protein 97.3 0.00043 1.5E-08 78.0 9.7 79 798-880 232-313 (420)
431 1pgv_A TMD-1, tropomodulin TMD 97.3 1.2E-05 4E-10 78.8 -3.5 71 47-117 32-111 (197)
432 3dxq_A Choline/ethanolamine ki 97.3 0.00095 3.2E-08 71.4 10.9 74 666-753 21-96 (301)
433 2yle_A Protein spire homolog 1 97.2 0.0012 4.1E-08 64.7 9.1 103 750-882 33-135 (229)
434 3feg_A Choline/ethanolamine ki 97.0 0.0014 4.9E-08 71.9 9.6 145 668-828 55-254 (379)
435 2qg7_A Ethanolamine kinase PV0 97.0 0.0029 9.9E-08 71.4 11.7 76 668-753 113-189 (458)
436 2ppq_A HSK, HK, homoserine kin 96.9 0.007 2.4E-07 65.3 13.5 170 652-828 6-217 (322)
437 1zyl_A Hypothetical protein YI 96.8 0.0072 2.5E-07 65.3 12.9 154 669-828 32-223 (328)
438 1nw1_A Choline kinase (49.2 KD 96.8 0.0023 7.9E-08 71.9 9.1 75 668-753 78-160 (429)
439 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00019 6.5E-09 70.2 0.1 17 298-314 152-168 (197)
440 3rfe_A Platelet glycoprotein I 96.6 0.0037 1.3E-07 57.0 6.8 55 36-92 12-67 (130)
441 3rfe_A Platelet glycoprotein I 96.6 0.0022 7.6E-08 58.5 5.2 57 59-117 11-68 (130)
442 3c5i_A Choline kinase; choline 96.5 0.004 1.4E-07 68.7 8.4 75 668-752 38-121 (369)
443 3csv_A Aminoglycoside phosphot 96.5 0.0098 3.3E-07 64.5 11.0 33 797-829 182-218 (333)
444 3i1a_A Spectinomycin phosphotr 96.4 0.0081 2.8E-07 65.2 9.4 32 798-829 206-237 (339)
445 3f2s_A CK, chetk-alpha, cholin 96.1 0.016 5.4E-07 63.8 9.9 146 668-828 57-280 (401)
446 3mes_A Choline kinase; malaria 95.3 0.029 1E-06 62.4 7.9 75 668-752 75-157 (424)
447 3g15_A CK, chetk-alpha, cholin 93.8 0.15 5E-06 56.6 9.2 30 800-829 246-281 (401)
448 2ks1_B Epidermal growth factor 91.5 0.23 7.8E-06 34.6 4.1 28 609-636 14-41 (44)
449 2l2t_A Receptor tyrosine-prote 91.0 0.3 1E-05 33.9 4.2 30 608-637 12-41 (44)
450 2jwa_A Receptor tyrosine-prote 88.5 0.38 1.3E-05 33.3 3.2 28 609-636 14-41 (44)
451 4ann_A ESSB; membrane protein, 79.5 2.8 9.7E-05 41.0 6.3 88 771-889 76-163 (215)
452 2k1k_A Ephrin type-A receptor 74.6 3.4 0.00012 27.8 3.6 10 608-617 12-21 (38)
453 4ano_A ESSB; membrane protein, 73.8 7.3 0.00025 38.2 7.4 83 771-884 80-163 (219)
454 3cxl_A N-chimerin; SH2, RHO-GA 67.3 0.58 2E-05 52.7 -2.3 62 666-730 145-214 (463)
455 1iij_A ERBB-2 receptor protein 62.7 4 0.00014 26.7 1.9 24 610-633 11-34 (35)
456 2k9y_A Ephrin type-A receptor 59.6 8 0.00028 26.4 3.2 11 608-618 15-25 (41)
457 2knc_A Integrin alpha-IIB; tra 46.5 27 0.00093 25.4 4.2 21 606-626 13-33 (54)
458 2lz0_A Uncharacterized protein 43.6 36 0.0012 28.6 5.5 38 146-184 14-51 (100)
459 1zza_A Stannin, AG8_1; helix, 41.1 40 0.0014 25.6 4.5 28 609-636 17-44 (90)
460 2lz0_A Uncharacterized protein 40.1 47 0.0016 27.9 5.6 15 121-135 36-50 (100)
461 1cja_A Protein (actin-fragmin 39.1 1.2E+02 0.0042 31.6 9.6 143 667-829 73-238 (342)
462 2l8s_A Integrin alpha-1; trans 34.9 56 0.0019 23.7 4.3 21 606-626 10-30 (54)
463 2lx0_A Membrane fusion protein 21.6 1E+02 0.0035 18.5 3.0 23 607-629 6-28 (32)
464 2k1a_A Integrin alpha-IIB; sin 21.3 1.6E+02 0.0054 20.2 4.4 19 607-625 12-30 (42)
465 2l2t_A Receptor tyrosine-prote 21.0 1.1E+02 0.0037 21.3 3.6 18 621-638 22-39 (44)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.5e-79 Score=750.90 Aligned_cols=581 Identities=31% Similarity=0.461 Sum_probs=464.0
Q ss_pred cCCccccCCCCCCCCCceeeeeEEeCCCCcEEEEEcCCCCCccc---cc-----------------------ccccCCCC
Q 001974 4 HDPQGILNSWNDSGHFCEWKGITCGLRHRRVTVLNLRSKGLSGS---LS-----------------------PYIGNLSF 57 (988)
Q Consensus 4 ~~~~~~~~~w~~~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~---~~-----------------------~~l~~l~~ 57 (988)
.||+ .++||+.++|||+|.||+|+ +++|+.|||+++++.|. +| +.++.+++
T Consensus 25 ~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~ 101 (768)
T 3rgz_A 25 PDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101 (768)
T ss_dssp SCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTT
T ss_pred CCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCC
Confidence 3898 99999988999999999998 78999999999999887 55 46677778
Q ss_pred CCEEEcCCCcccccCCc--ccCCCCCCcEEECCCCCCCCcCCccc-ccCCCCceeecCcccccCCCccc---ccCccccc
Q 001974 58 LREINLMNNSIQGEIPR--EFGRLFRLEALFLSDNDLVGEIPANL-SYCSRLTILFLGRNKLMGSIPFE---FFSLYKLK 131 (988)
Q Consensus 58 L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~i~~~~~~~---~~~l~~L~ 131 (988)
|++|+|++|++++.+|. .|+.+++|++|+|++|.+.+.+|..+ ..+++|++|+|++|++++..|.. +.++++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~ 181 (768)
T 3rgz_A 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181 (768)
T ss_dssp CCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCC
T ss_pred CCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCC
Confidence 88888888888877777 78888888888888888877777665 67777777777777777666655 55666666
Q ss_pred ccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCC
Q 001974 132 QLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQ 211 (988)
Q Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 211 (988)
+|++++|.+++..+. ..+++|++|+|++|++.+.+|. |+++++|++|+|++|++++.+|..+..+++|++|++++|+
T Consensus 182 ~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 182 HLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp EEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred EEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 666666666544332 5566666666666666655554 6666666666666666666666666666666666666555
Q ss_pred CC----------------------CCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCccccc-
Q 001974 212 FH----------------------GSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVN- 268 (988)
Q Consensus 212 i~----------------------~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~- 268 (988)
+. +.+|..++..+++|++|+|++|++++.+|..+.++++|++|++++|++.+.+|..
T Consensus 259 l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~ 338 (768)
T 3rgz_A 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338 (768)
T ss_dssp CEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred ccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH
Confidence 54 4555555544577777777777777777777777778888888888777666654
Q ss_pred ccCCccccEEecccccCCCCCCCchhhhc-------------------cccc--CCCCcEEEeecccCCCCCCchhhhcc
Q 001974 269 FGGMKNLSYFNVAYNNLGSGESDEMSFMN-------------------SLAN--CSNLRTLIFAANKLRGALPHSIANLS 327 (988)
Q Consensus 269 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------------~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~ 327 (988)
|..+++|++|++++|.+++..+..+.... .+.. +++|++|++++|++++.+|..+..+.
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 77777888888888877644333222111 1112 56677777778877777787777765
Q ss_pred ccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEc
Q 001974 328 DQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLL 407 (988)
Q Consensus 328 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 407 (988)
+|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|+|++|++++.+|..+.++++|++|+|
T Consensus 419 -~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 419 -ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp -TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred -CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 6888888888888888888888888999999999988888888888899999999999998888888999999999999
Q ss_pred cccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCcccc------------------
Q 001974 408 NNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKI------------------ 469 (988)
Q Consensus 408 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~------------------ 469 (988)
++|++++.+|.+|+.+++|+.|+|++|+++|.+|..+..++.| +.|++++|+++|.+|..+
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 9999998899999999999999999999998999999999888 889999998887777544
Q ss_pred ----------------------------------------------------ccccccceeecCCcccccccCcccccCC
Q 001974 470 ----------------------------------------------------GNLKYLRVFNVSSNNLSGEIPSQLGLCS 497 (988)
Q Consensus 470 ----------------------------------------------------~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 497 (988)
+.+++|+.|||++|+++|.+|..|+.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 3357799999999999999999999999
Q ss_pred CCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCCCcccCccccccccc
Q 001974 498 YLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPTKGVFANISRISVAG 576 (988)
Q Consensus 498 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~ 576 (988)
+|+.|+|++|+++|.+|.+|+++++|+.||||+|+++|.+|.. ..+.+|++|||++|+|+|.+|..+++.++...++.|
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence 9999999999999999999999999999999999999999987 778899999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCcccccC
Q 001974 577 FNRLCGGIPELQLPKCTEKN 596 (988)
Q Consensus 577 n~~lcg~~~~~~~~~~~~~~ 596 (988)
|+++||.|.. .|....
T Consensus 737 N~~Lcg~~l~----~C~~~~ 752 (768)
T 3rgz_A 737 NPGLCGYPLP----RCDPSN 752 (768)
T ss_dssp CTEEESTTSC----CCCSCC
T ss_pred CchhcCCCCc----CCCCCc
Confidence 9999998753 575443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-66 Score=636.75 Aligned_cols=513 Identities=35% Similarity=0.514 Sum_probs=449.3
Q ss_pred EEEEEcCCCCCccccccc---ccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceee
Q 001974 34 VTVLNLRSKGLSGSLSPY---IGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILF 110 (988)
Q Consensus 34 v~~l~l~~~~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (988)
++.|||++|.+++..+.. +..+++|++|+|++|++++..| +..+++|++|+|++|.+++.+|. |+.+++|++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence 444444444444444433 4455555555555555554333 26778888888888888877776 88888899999
Q ss_pred cCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCc-cccccccccccccc
Q 001974 111 LGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQL-KELKSLGLGANNLS 189 (988)
Q Consensus 111 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~ 189 (988)
|++|++++..|..|.++++|++|+|++|.+++.+|.. .+++|++|++++|++++.+|..+.++ ++|++|+|++|+++
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 9988888888888888889999999999888777765 78889999999999988888888775 99999999999999
Q ss_pred CccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCC-cccEEEeccccccCccccc
Q 001974 190 GIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNAS-KLEFIEALDNSFSGKLSVN 268 (988)
Q Consensus 190 ~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~l~~N~i~~~~~~~ 268 (988)
+.+|..|.++++|++|++++|++.+.+|...+..+++|++|++++|++++.+|..+.+++ +|+.|++++|++++..+..
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 999999999999999999999998889988777899999999999999999999999887 8999999999999888888
Q ss_pred ccC--CccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCc
Q 001974 269 FGG--MKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPS 346 (988)
Q Consensus 269 ~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~ 346 (988)
+.. +++|++|++++|.+++..+. .+..+++|++|++++|++++.+|..+..+. +|+.|++++|++.+.+|.
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPP------TLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCG------GGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCG
T ss_pred hhhcccCCccEEECCCCccccccCH------HHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCH
Confidence 777 88999999999999865443 578899999999999999999999998886 799999999999999999
Q ss_pred cccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccccccccccccccc
Q 001974 347 GIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQL 426 (988)
Q Consensus 347 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 426 (988)
.+..+++|++|++++|++++.+|..+.++++|++|+|++|++++.+|.+++.+++|++|+|++|++++.+|..++.+++|
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCccCchhhhh------------------------------------------------------------
Q 001974 427 AILHLFENGLNGTIPEEIFN------------------------------------------------------------ 446 (988)
Q Consensus 427 ~~L~l~~N~l~~~~p~~~~~------------------------------------------------------------ 446 (988)
+.|++++|+++|.+|..++.
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 99999999999999987654
Q ss_pred ----------hcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCcc
Q 001974 447 ----------LTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSS 516 (988)
Q Consensus 447 ----------l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 516 (988)
++.+ +.|||++|+++|.+|..++.+++|+.|||++|+++|.+|..|+.+++|+.|||++|+++|.+|..
T Consensus 621 ~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 621 GGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred cccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 2345 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCc-Cccc
Q 001974 517 LSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFND-LEGE 559 (988)
Q Consensus 517 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~-l~~~ 559 (988)
++.++.|++||||+|+|+|.+|.......+....+.+|. |.|.
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 999999999999999999999988766677777788885 5553
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.8e-61 Score=589.16 Aligned_cols=564 Identities=21% Similarity=0.195 Sum_probs=482.1
Q ss_pred CCceeeeeEEeC---------CCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECC
Q 001974 18 HFCEWKGITCGL---------RHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLS 88 (988)
Q Consensus 18 ~~c~~~~v~c~~---------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 88 (988)
|.|.+..|.|.. .+.+++.|+|++|++++..+..|+.+++|++|+|++|++++..|.+|+++++|++|+|+
T Consensus 2 C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp --CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred ceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 346666777774 23689999999999998888889999999999999999999999999999999999999
Q ss_pred CCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCC
Q 001974 89 DNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNI 168 (988)
Q Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 168 (988)
+|.+++..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 99999666668999999999999999999888899999999999999999999888999999999999999999999777
Q ss_pred Ccccc--CcccccccccccccccCccchhhccc---------------------------cCccEEEeccCCCCCCCCCc
Q 001974 169 PNSLG--QLKELKSLGLGANNLSGIIPPSIYNL---------------------------SLLANFSVPRNQFHGSLPPS 219 (988)
Q Consensus 169 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~l~~l---------------------------~~L~~L~L~~N~i~~~lp~~ 219 (988)
+..|. .+++|++|+|++|++++..|..+..+ ++|+.|++++|++.+..|..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 77665 56899999999999998888877765 45677778888887444443
Q ss_pred ccccCC--CCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhh-
Q 001974 220 LGLTLP--HLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFM- 296 (988)
Q Consensus 220 ~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~- 296 (988)
+..++ +|+.|++++|++++..|..|..+++|++|++++|.+.+..+..|.++++|+.|++++|........ ...+
T Consensus 242 -~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~lp~ 319 (680)
T 1ziw_A 242 -FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPK 319 (680)
T ss_dssp -TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCE
T ss_pred -hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc-ccccc
Confidence 44554 499999999999988888899999999999999999999888999999999999988754421100 0000
Q ss_pred ---cccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCcccc--CCCccccCC--CcceEEEeeCccCCCccC
Q 001974 297 ---NSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHG--SIPSGIGNL--VGLYRLGMGGNQFTGTIP 369 (988)
Q Consensus 297 ---~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~--~~~~~~~~l--~~L~~L~L~~N~l~~~~p 369 (988)
..|..+++|++|++++|++++..|..+..+. +|++|++++|.+.. .....+..+ ++|+.|++++|++++..|
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 1567889999999999999987777777765 79999999998542 222334333 589999999999998889
Q ss_pred cccCCCCccCeEecccccCCCCCC-CCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCC--ccCchhhhh
Q 001974 370 KEMGKLQNLEGMGLYDNQLSGEIP-SSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLN--GTIPEEIFN 446 (988)
Q Consensus 370 ~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~ 446 (988)
..|..+++|+.|+|++|++++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +.+|..+.+
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 999999999999999999987666 67999999999999999999999999999999999999999987 578999999
Q ss_pred hcccccceecccccccCCCccccccccccceeecCCcccccccC--------cccccCCCCcEEEecCccccccCCcccc
Q 001974 447 LTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIP--------SQLGLCSYLEEIYMRGNFFHGSIPSSLS 518 (988)
Q Consensus 447 l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 518 (988)
++.| +.|++++|++++..|..|..+++|+.|+|++|++++..+ ..|+.+++|+.|+|++|+++...+..|.
T Consensus 479 l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 479 LRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp CTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCC-CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 9999 999999999998888889999999999999999996422 2378999999999999999954445799
Q ss_pred CccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCCCc--ccCcccccccccccccCCCCC
Q 001974 519 SLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPTKG--VFANISRISVAGFNRLCGGIP 585 (988)
Q Consensus 519 ~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~lcg~~~ 585 (988)
.+++|+.|||++|+|++.++.. ..+++|++|+|++|++++.+|... .+..+..+.+.+||+.|+|..
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999999988876 677899999999999999887532 467788889999999999863
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.6e-59 Score=560.12 Aligned_cols=535 Identities=19% Similarity=0.182 Sum_probs=344.6
Q ss_pred CCCCCCCce--eeeeEEeCC---------CCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCC
Q 001974 13 WNDSGHFCE--WKGITCGLR---------HRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFR 81 (988)
Q Consensus 13 w~~~~~~c~--~~~v~c~~~---------~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 81 (988)
|-+..|.|. +..|.|... +..++.|||++|.|++..|.+|+.+++|++|+|++|+|+++.|.+|.++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 334555554 455666531 234555555555555444555555555555555555555555555555555
Q ss_pred CcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccc
Q 001974 82 LEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAA 161 (988)
Q Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (988)
|++|+|++|++++..|..|+.+++|++|+|++|+|++..+..|.++++|++|+|++|++++.....+.++++|++|++++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 55555555555544555555555555555555555544445555555555555555555543323333355555555555
Q ss_pred cccCCCCCccccCccccc--ccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccc-
Q 001974 162 NAFGGNIPNSLGQLKELK--SLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFS- 238 (988)
Q Consensus 162 N~l~~~~~~~~~~l~~L~--~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~- 238 (988)
|++++..+..|+.+++|+ .|++++|++++..|..+.. .+|+.|++++|... + ..+..+.++....+..+.+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~-~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---L-VIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---H-HHHHHTTTCEEEEEECCCCTT
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---H-HHhhhccccchhheechhhcc
Confidence 555544445555555555 4555555555444433332 34555555554311 1 11112222221111111111
Q ss_pred ----cccCcccccCC--cccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeec
Q 001974 239 ----GSIPISLSNAS--KLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAA 312 (988)
Q Consensus 239 ----~~~p~~l~~l~--~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 312 (988)
...+..+..+. +|+.|++++|.+.+..+..|..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSA 310 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTT
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-------hhcccccCCEEECcc
Confidence 11122233332 67888888888888887778888888888888888875543 356778888888888
Q ss_pred ccCCCCCCchhhhccccccEEEccCCccccCCCc-cccCCCcceEEEeeCccCCCcc--CcccCCCCccCeEecccccCC
Q 001974 313 NKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPS-GIGNLVGLYRLGMGGNQFTGTI--PKEMGKLQNLEGMGLYDNQLS 389 (988)
Q Consensus 313 N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~ 389 (988)
|++++..|..+..++ +|+.|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+..+++|++|++++|+++
T Consensus 311 n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 311 NKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp CCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred CCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 888866666666664 688888888888765554 4778888888888888887655 667888888888888888888
Q ss_pred CCCCCCCCCCCCCCEEEccccccccccccc-cccccccceeecCCCCCCccCchhhhhhcccccceecccccccCC---C
Q 001974 390 GEIPSSLGNLSILSELLLNNNSLSGVIPSC-LGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGS---I 465 (988)
Q Consensus 390 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~---~ 465 (988)
+..|..|..+++|+.|++++|++.+..|.. |..+++|+.|++++|.+++..|..+..++.| ++|++++|++++. .
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~ 468 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQK 468 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECS
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCcccccc
Confidence 777788888888888888888887665543 7788888888888888887777777778887 7888888888752 2
Q ss_pred ccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCC
Q 001974 466 PTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDL 544 (988)
Q Consensus 466 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~ 544 (988)
+..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..|.+++.| .|||++|++++.+|.. ..++
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC
Confidence 3567788888888888888887777888888888888888888888888888888888 8888888888887775 5666
Q ss_pred CCcEEeCCCCcCcccCCC
Q 001974 545 SLEYLNLSFNDLEGEVPT 562 (988)
Q Consensus 545 ~L~~l~l~~N~l~~~~p~ 562 (988)
+|++|++++|++++.++.
T Consensus 548 ~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 548 QQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TSSEEECTTCCEECSGGG
T ss_pred CCCEEeCCCCCccccCCc
Confidence 788888888888876663
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-57 Score=556.80 Aligned_cols=523 Identities=19% Similarity=0.201 Sum_probs=461.6
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeec
Q 001974 32 RRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFL 111 (988)
Q Consensus 32 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (988)
.+++.|||++|.+++..|..++.+++|++|+|++|+|++..+.+|+++++|++|+|++|++++..|..|+.+++|++|+|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 57899999999999999999999999999999999999766678999999999999999999887889999999999999
Q ss_pred CcccccCCCcccccCcccccccccccccccCCCCCccc--CCCccceeeccccccCCCCCccccCc--------------
Q 001974 112 GRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIG--NLTSLESISLAANAFGGNIPNSLGQL-------------- 175 (988)
Q Consensus 112 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l-------------- 175 (988)
++|++++..|..|.++++|++|++++|.+++..+..+. .+++|++|++++|++++..|..|..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 99999999999999999999999999999977766654 56899999999999998888877755
Q ss_pred -------------ccccccccccccccCccchhhccccC--ccEEEeccCCCCCCCCCcccccCCCCcceeccccccccc
Q 001974 176 -------------KELKSLGLGANNLSGIIPPSIYNLSL--LANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGS 240 (988)
Q Consensus 176 -------------~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~ 240 (988)
++|+.|+|++|++++..|..+.+++. |+.|++++|++. .++...+..+++|+.|++++|++++.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCcc
Confidence 45678888899999888999998866 999999999999 55555667899999999999999999
Q ss_pred cCcccccCCcccEEEeccccccC---------cccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEee
Q 001974 241 IPISLSNASKLEFIEALDNSFSG---------KLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFA 311 (988)
Q Consensus 241 ~p~~l~~l~~L~~L~l~~N~i~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls 311 (988)
.|..+..+++|+.|++++|...+ +....|..+++|++|++++|.++.+.+. .|..+++|++|+++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN------MFTGLINLKYLSLS 361 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT------TTTTCTTCCEEECT
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh------HhccccCCcEEECC
Confidence 99999999999999999876553 2223788999999999999999987665 57789999999999
Q ss_pred cccCCC-CCCc-hhhhcc-ccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccC-cccCCCCccCeEeccccc
Q 001974 312 ANKLRG-ALPH-SIANLS-DQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIP-KEMGKLQNLEGMGLYDNQ 387 (988)
Q Consensus 312 ~N~l~~-~~p~-~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~ 387 (988)
+|.+.. .++. .+.... +.|+.|++++|++++..|..+..+++|+.|++++|++++.+| ..|.++++|++|+|++|+
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 998643 2222 222221 479999999999999999999999999999999999987666 689999999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEccccccc--cccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCC
Q 001974 388 LSGEIPSSLGNLSILSELLLNNNSLS--GVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSI 465 (988)
Q Consensus 388 l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~ 465 (988)
+++..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++++..|..+.+++.| ++|++++|++++..
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLW 520 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGG
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccc
Confidence 99888999999999999999999987 5789999999999999999999996556678889999 99999999998542
Q ss_pred c--------cccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcC
Q 001974 466 P--------TKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLI 537 (988)
Q Consensus 466 p--------~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 537 (988)
+ ..+..+++|+.|+|++|+++...+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++.+
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 2 24789999999999999999444457999999999999999999777777899999999999999999999
Q ss_pred cccc--cCCCCcEEeCCCCcCcccCCC
Q 001974 538 PKFL--EDLSLEYLNLSFNDLEGEVPT 562 (988)
Q Consensus 538 p~~~--~~~~L~~l~l~~N~l~~~~p~ 562 (988)
|... .+++|+.|+|++|++.+..+.
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hhHhcccccccCEEEccCCCcccCCcc
Confidence 8763 578999999999999998874
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-57 Score=561.25 Aligned_cols=510 Identities=20% Similarity=0.171 Sum_probs=283.8
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCccccc-CCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCcee
Q 001974 31 HRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGE-IPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTIL 109 (988)
Q Consensus 31 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (988)
+..++.|||++|.|++..|.+|..+++|++|+|++|.+.+. .|.+|.++++|++|+|++|.+++..|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 34566666666666655566666666666666666643322 35556666666666666666665556666666666666
Q ss_pred ecCcccccCCCccc--ccCcccccccccccccccCCCC-CcccCCCccceeeccccccCCCCCccccCc--ccccccccc
Q 001974 110 FLGRNKLMGSIPFE--FFSLYKLKQLAMQRNNLTGGIP-PFIGNLTSLESISLAANAFGGNIPNSLGQL--KELKSLGLG 184 (988)
Q Consensus 110 ~L~~N~i~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~ 184 (988)
+|++|++++..|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..|..+ ++|+.|+|+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 66666665544433 5666666666666666654433 345666666666666666665555556555 556666666
Q ss_pred cccccCccchhhccccC------ccEEEeccCCCCCCCCCcccccC--CCCcceeccc---------cccccccCccccc
Q 001974 185 ANNLSGIIPPSIYNLSL------LANFSVPRNQFHGSLPPSLGLTL--PHLRLFQVHH---------NFFSGSIPISLSN 247 (988)
Q Consensus 185 ~N~l~~~~~~~l~~l~~------L~~L~L~~N~i~~~lp~~~~~~l--~~L~~L~L~~---------N~l~~~~p~~l~~ 247 (988)
+|.+.+..|..+..+.+ |+.|++++|.+.+.++..+...+ ..+..|.++. |.+.+..+..|..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 66666555555444443 66666666666555555444322 3344444442 2222222333333
Q ss_pred C--CcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhh
Q 001974 248 A--SKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIAN 325 (988)
Q Consensus 248 l--~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 325 (988)
+ ++|+.|++++|.+.+..+..|..+++|+.|+|++|.++.+.+. .|..+++|++|+|++|++++..|..+..
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE------AFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT------TTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH------HhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 3 4566666666666666566666666666666666666554433 3455566666666666665555555555
Q ss_pred ccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEE
Q 001974 326 LSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSEL 405 (988)
Q Consensus 326 ~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 405 (988)
++ +|+.|++++|++.+..+..|..+++|+.|+|++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|
T Consensus 337 l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L 406 (844)
T 3j0a_A 337 LP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLI 406 (844)
T ss_dssp CT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEE
T ss_pred CC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---cccccee
Confidence 43 46666666666665555556666666666666666652 22 2455666666666665 33432 3445566
Q ss_pred Ecccccccccc-ccccccccccceeecCCCCCCccCch-hhhhhcccccceeccccccc-----CCCcccccccccccee
Q 001974 406 LLNNNSLSGVI-PSCLGSLKQLAILHLFENGLNGTIPE-EIFNLTYLSNSLNLARNHLV-----GSIPTKIGNLKYLRVF 478 (988)
Q Consensus 406 ~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~l~~~L~ls~N~l~-----~~~p~~~~~l~~L~~L 478 (988)
++++|++++.. +..+..+++|+.|+|++|++++..+. .+..++.| +.|+|++|.++ +..|..|..+++|+.|
T Consensus 407 ~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp ECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred ecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccccccccchhhhcCcccccEE
Confidence 66666665431 12234556666666666666532222 12334444 56666666654 2333445556666666
Q ss_pred ecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcc
Q 001974 479 NVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEG 558 (988)
Q Consensus 479 ~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~ 558 (988)
+|++|+|++..|..|..+++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|... .+|+.|++++|++.+
T Consensus 486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECCCC
T ss_pred ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCccc
Confidence 6666666655555566666666666666666654444444 556666666666666655442 255666666666655
Q ss_pred cCC
Q 001974 559 EVP 561 (988)
Q Consensus 559 ~~p 561 (988)
.++
T Consensus 562 ~c~ 564 (844)
T 3j0a_A 562 ECE 564 (844)
T ss_dssp SSS
T ss_pred ccc
Confidence 554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-57 Score=549.43 Aligned_cols=504 Identities=20% Similarity=0.173 Sum_probs=363.1
Q ss_pred EEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccc
Q 001974 37 LNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKL 116 (988)
Q Consensus 37 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i 116 (988)
++.++++++ .+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|++
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 444455554 3444333 4555555555555555555555555555555555555544455555555555555555555
Q ss_pred cCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCC-CCCccccCcccccccccccccccCccchh
Q 001974 117 MGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGG-NIPNSLGQLKELKSLGLGANNLSGIIPPS 195 (988)
Q Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 195 (988)
++..|.+|.++++|++|+|++|.+++..+..|+++++|++|++++|++++ .+|..|+++++|++|+|++|++++..+..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 55555555555555555555555554444555555555555555555543 23555555555555555555555555555
Q ss_pred hccccCcc----EEEeccCCCCCCCCCcccccCCCCcceeccccccc-cccCcccccCCcccE-----------------
Q 001974 196 IYNLSLLA----NFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFS-GSIPISLSNASKLEF----------------- 253 (988)
Q Consensus 196 l~~l~~L~----~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~----------------- 253 (988)
+..+++|+ .|++++|++. .++...+... +|+.|++++|.++ +..|..+.+++.|+.
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 55544443 4555555555 4444444332 5555555555554 233334444444444
Q ss_pred ---------------EEe-ccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCC
Q 001974 254 ---------------IEA-LDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRG 317 (988)
Q Consensus 254 ---------------L~l-~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 317 (988)
+++ ..|.+.+..+. |..+++|+.|++++|.++.++ .+..+++|++|++++|++ +
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-S
T ss_pred ChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-c
Confidence 444 66777777777 888999999999999987654 367788999999999999 5
Q ss_pred CCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCc--cCcccCCCCccCeEecccccCCCCCCCC
Q 001974 318 ALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGT--IPKEMGKLQNLEGMGLYDNQLSGEIPSS 395 (988)
Q Consensus 318 ~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 395 (988)
.+|. + .+ ++|+.|++++|+..+.. .+..+++|+.|++++|++++. .|..+..+++|+.|+|++|.++ .+|..
T Consensus 321 ~lp~-~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~ 394 (606)
T 3vq2_A 321 QFPT-L-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN 394 (606)
T ss_dssp SCCC-C-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCC
T ss_pred cccc-C-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhh
Confidence 8884 4 44 57999999999665444 677899999999999999865 3788899999999999999998 46788
Q ss_pred CCCCCCCCEEEccccccccccc-cccccccccceeecCCCCCCccCchhhhhhcccccceecccccccC-CCcccccccc
Q 001974 396 LGNLSILSELLLNNNSLSGVIP-SCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVG-SIPTKIGNLK 473 (988)
Q Consensus 396 ~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~-~~p~~~~~l~ 473 (988)
+..+++|+.|++++|++.+..| ..|..+++|+.|++++|++++.+|..+.+++.| ++|++++|++++ .+|..++.++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCC
Confidence 9999999999999999998877 688999999999999999998888888999998 899999999987 4788899999
Q ss_pred ccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCC-CCcEEeCC
Q 001974 474 YLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDL-SLEYLNLS 552 (988)
Q Consensus 474 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~L~~l~l~ 552 (988)
+|+.|+|++|++++..|..|+.+++|+.|+|++|++++.+|..|..+++|+.|||++|+|+..++.+..++ +|++|+++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEcc
Confidence 99999999999998888999999999999999999998889999999999999999999997666666776 59999999
Q ss_pred CCcCcccCCC
Q 001974 553 FNDLEGEVPT 562 (988)
Q Consensus 553 ~N~l~~~~p~ 562 (988)
+|++.+..+.
T Consensus 554 ~N~~~c~c~~ 563 (606)
T 3vq2_A 554 NNSVACICEH 563 (606)
T ss_dssp SCCCCCSSTT
T ss_pred CCCcccCCcc
Confidence 9999987775
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-57 Score=548.25 Aligned_cols=495 Identities=19% Similarity=0.158 Sum_probs=440.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeec
Q 001974 32 RRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFL 111 (988)
Q Consensus 32 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (988)
..++.|+|++|++++..|.+|+.+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+.+++|++|+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 58999999999999988999999999999999999999999999999999999999999999877889999999999999
Q ss_pred CcccccCCCcccccCcccccccccccccccCCCCCcccCCCccc--eeeccccccCCCCCccccCccccccccccccccc
Q 001974 112 GRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLE--SISLAANAFGGNIPNSLGQLKELKSLGLGANNLS 189 (988)
Q Consensus 112 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 189 (988)
++|++++.....+..+++|++|++++|.+++..+..|+.+++|+ +|++++|.+++..|..|.. .+|+.|++++|.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~-- 213 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ-- 213 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS--
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch--
Confidence 99999976656667799999999999999988888899999999 8999999999877777665 689999999997
Q ss_pred CccchhhccccCccEEEeccCCCCC----CCCCcccccCC--CCcceeccccccccccCcccccCCcccEEEeccccccC
Q 001974 190 GIIPPSIYNLSLLANFSVPRNQFHG----SLPPSLGLTLP--HLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSG 263 (988)
Q Consensus 190 ~~~~~~l~~l~~L~~L~L~~N~i~~----~lp~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~ 263 (988)
..+..+.++.+++...+..+.+.+ .++...+.++. +|+.|++++|.+++..+..|..+++|+.|++++|+++
T Consensus 214 -~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 214 -NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp -CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred -hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 456677777766665555444331 44555555554 7999999999999988888999999999999999998
Q ss_pred cccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccC
Q 001974 264 KLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGS 343 (988)
Q Consensus 264 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~ 343 (988)
.+|..+..+++|++|++++|.++...+. .+..+++|++|++++|.+.+.+|.......++|++|++++|++.+.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQI------SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGG------CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred CCChhhcccccCCEEECccCCcCcCchh------hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 5677799999999999999999865443 5778999999999999999888776444445899999999999976
Q ss_pred C--CccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCC-CCCCCCCCCEEEcccccccccccccc
Q 001974 344 I--PSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPS-SLGNLSILSELLLNNNSLSGVIPSCL 420 (988)
Q Consensus 344 ~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~ 420 (988)
. +..+..+++|+.|++++|++.+..|..|..+++|+.|++++|++++..|. .+.++++|+.|++++|.+.+..|..|
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 6 78899999999999999999988899999999999999999999977665 48999999999999999999999999
Q ss_pred ccccccceeecCCCCCCcc---CchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCC
Q 001974 421 GSLKQLAILHLFENGLNGT---IPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCS 497 (988)
Q Consensus 421 ~~l~~L~~L~l~~N~l~~~---~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 497 (988)
..+++|+.|++++|++++. .+..+..++.| +.|++++|++++..|..|..+++|+.|+|++|++++..|..|..++
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCc-cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 9999999999999999863 23568889999 9999999999988899999999999999999999999999999999
Q ss_pred CCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcc
Q 001974 498 YLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPK 539 (988)
Q Consensus 498 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 539 (988)
+| .|+|++|++++..|..+..+++|+.|++++|.+....+.
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99 999999999999999999999999999999999986653
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-56 Score=558.33 Aligned_cols=525 Identities=22% Similarity=0.232 Sum_probs=456.7
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcC-CcccccCCCCceeecCc
Q 001974 35 TVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEI-PANLSYCSRLTILFLGR 113 (988)
Q Consensus 35 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~ 113 (988)
...|.++++++ .+|. ..++|++|||++|+|++..|..|.++++|++|+|++|.+.+.+ |.+|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 35577788888 5565 4578999999999999999999999999999999999665555 88999999999999999
Q ss_pred ccccCCCcccccCcccccccccccccccCCCCCc--ccCCCccceeeccccccCCCCC-ccccCcccccccccccccccC
Q 001974 114 NKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPF--IGNLTSLESISLAANAFGGNIP-NSLGQLKELKSLGLGANNLSG 190 (988)
Q Consensus 114 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 190 (988)
|+|++..|.+|.++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999999766654 9999999999999999987655 579999999999999999999
Q ss_pred ccchhhccc--cCccEEEeccCCCCCCCCCcccccCC------CCcceeccccccccccCcccccC---CcccEEEec--
Q 001974 191 IIPPSIYNL--SLLANFSVPRNQFHGSLPPSLGLTLP------HLRLFQVHHNFFSGSIPISLSNA---SKLEFIEAL-- 257 (988)
Q Consensus 191 ~~~~~l~~l--~~L~~L~L~~N~i~~~lp~~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~l~-- 257 (988)
..+..+..+ ++|+.|+++.|.+.+..|..+. .++ +|+.|++++|.+++..+..+... .+++.+.++
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 999999988 8999999999999977776543 333 49999999999998888777654 567888876
Q ss_pred -------cccccCcccccccCC--ccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccc
Q 001974 258 -------DNSFSGKLSVNFGGM--KNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSD 328 (988)
Q Consensus 258 -------~N~i~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 328 (988)
.|.+.+.....|.++ ++|+.|++++|.++...+. .|..+++|++|+|++|++++..|..+..+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~- 314 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------VFETLKDLKVLNLAYNKINKIADEAFYGLD- 314 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------CSSSCCCCCEEEEESCCCCEECTTTTTTCS-
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChh------hhhcCCCCCEEECCCCcCCCCChHHhcCCC-
Confidence 344555556667665 7899999999999876554 578899999999999999988888887775
Q ss_pred cccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcc
Q 001974 329 QLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLN 408 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 408 (988)
+|++|+|++|++++..|..+..+++|+.|++++|++.+..+..|.++++|+.|+|++|.+++ ++ .+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence 79999999999998889999999999999999999998888889999999999999999984 33 38899999999
Q ss_pred ccccccccccccccccccceeecCCCCCCccCch--hhhhhcccccceecccccccCCCcc-ccccccccceeecCCccc
Q 001974 409 NNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPE--EIFNLTYLSNSLNLARNHLVGSIPT-KIGNLKYLRVFNVSSNNL 485 (988)
Q Consensus 409 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~l~~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l 485 (988)
+|+++ .+|.. ..+++.|++++|++++ ++. .+.+++.| +.|+|++|++++..+. .+..+++|+.|+|++|.+
T Consensus 390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 390 GNKLV-TLPKI---NLTANLIHLSENRLEN-LDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp SCCCC-CCCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred CCCcc-ccccc---ccccceeecccCcccc-CchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 99999 45554 4679999999999984 433 45588888 9999999999865443 456689999999999999
Q ss_pred c-----cccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcccC
Q 001974 486 S-----GEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEGEV 560 (988)
Q Consensus 486 ~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~~~ 560 (988)
+ +..|..|..+++|+.|+|++|.|++..|..|..+++|+.|||++|+|++.+|.... ++|+.|+|++|+|++.+
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPN 542 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCC
T ss_pred ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCC
Confidence 7 45567789999999999999999999999999999999999999999998887755 78999999999999999
Q ss_pred CCCcccCcccccccccccccCCCCC
Q 001974 561 PTKGVFANISRISVAGFNRLCGGIP 585 (988)
Q Consensus 561 p~~~~~~~~~~~~~~~n~~lcg~~~ 585 (988)
|.. +..+..+.+.+||+.|.|..
T Consensus 543 ~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 543 PDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp SCC--CSSCCEEEEEEECCCCSSSC
T ss_pred hhH--hCCcCEEEecCCCccccccc
Confidence 965 67888889999999998763
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-56 Score=537.61 Aligned_cols=503 Identities=19% Similarity=0.149 Sum_probs=444.2
Q ss_pred CCcee----eeeEEeC---------CCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcE
Q 001974 18 HFCEW----KGITCGL---------RHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEA 84 (988)
Q Consensus 18 ~~c~~----~~v~c~~---------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 84 (988)
+.|.| ..|.|.. ...+++.|+|++|++++..+.+|..+++|++|+|++|+|+++.|.+|.++++|++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 44655 3677864 2368999999999999888889999999999999999999989999999999999
Q ss_pred EECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccC-CCCCcccCCCccceeeccccc
Q 001974 85 LFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTG-GIPPFIGNLTSLESISLAANA 163 (988)
Q Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 163 (988)
|+|++|.+++..|..|+++++|++|+|++|++++..+..|+++++|++|+|++|.+++ .+|..|+++++|++|++++|+
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 9999999998889999999999999999999998888999999999999999999986 569999999999999999999
Q ss_pred cCCCCCccccCccccc----ccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceec-------
Q 001974 164 FGGNIPNSLGQLKELK----SLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQV------- 232 (988)
Q Consensus 164 l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L------- 232 (988)
+++..+..|+.+++|+ +|++++|.++++.+..+... +|+.|++++|.+.+......+..+++|+.+++
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 9988888899888876 79999999997766666655 89999999998863333333344555554444
Q ss_pred --------------------------cccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCC
Q 001974 233 --------------------------HHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLG 286 (988)
Q Consensus 233 --------------------------~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 286 (988)
..|.+.+.+|. +..+++|+.|++++|.+.... .+..+++|+.|++++|.++
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc
Confidence 67777777777 899999999999999997654 7899999999999999996
Q ss_pred CCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccC--CCccccCCCcceEEEeeCccC
Q 001974 287 SGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGS--IPSGIGNLVGLYRLGMGGNQF 364 (988)
Q Consensus 287 ~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l 364 (988)
.++ .+ .+++|++|++++|+..+.. .+..+ ++|++|++++|++++. .|..+..+++|+.|++++|.+
T Consensus 321 ~lp--------~~-~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 321 QFP--------TL-DLPFLKSLTLTMNKGSISF--KKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp SCC--------CC-CCSSCCEEEEESCSSCEEC--CCCCC-TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred ccc--------cC-CCCccceeeccCCcCccch--hhccC-CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence 554 23 7899999999999665444 33344 4799999999999976 488899999999999999999
Q ss_pred CCccCcccCCCCccCeEecccccCCCCCC-CCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCcc-Cch
Q 001974 365 TGTIPKEMGKLQNLEGMGLYDNQLSGEIP-SSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGT-IPE 442 (988)
Q Consensus 365 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~ 442 (988)
+ .+|..+..+++|+.|++++|++.+..| ..+.++++|+.|++++|.+.+..|..|..+++|+.|++++|++++. +|.
T Consensus 389 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 389 I-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp E-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred c-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 9 577899999999999999999998877 6899999999999999999999999999999999999999999974 788
Q ss_pred hhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCcc-
Q 001974 443 EIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLR- 521 (988)
Q Consensus 443 ~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~- 521 (988)
.+..++.| +.|++++|++++..|..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|+|+ .+|..+..++
T Consensus 468 ~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~ 545 (606)
T 3vq2_A 468 VFANTTNL-TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPK 545 (606)
T ss_dssp CCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCT
T ss_pred hhccCCCC-CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcc
Confidence 89999999 99999999999999999999999999999999999988999999999999999999999 7888899997
Q ss_pred ccCeeecCCCcccCcCcc
Q 001974 522 AVLAIDLSRNNLSGLIPK 539 (988)
Q Consensus 522 ~L~~L~ls~N~l~~~~p~ 539 (988)
+|+.|++++|.+....+.
T Consensus 546 ~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 546 SLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECCSCCCCCSSTT
T ss_pred cCcEEEccCCCcccCCcc
Confidence 699999999999976654
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-56 Score=540.51 Aligned_cols=485 Identities=21% Similarity=0.279 Sum_probs=259.8
Q ss_pred CccccCCCCCCCCCcee---eeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCccc------c------
Q 001974 6 PQGILNSWNDSGHFCEW---KGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQ------G------ 70 (988)
Q Consensus 6 ~~~~~~~w~~~~~~c~~---~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~------~------ 70 (988)
+.....+|..++|||.| .||+|+.. ++|+.|+|++++++|.+|++++.|++|++|+|++|++. +
T Consensus 53 ~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~ 131 (636)
T 4eco_A 53 GTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131 (636)
T ss_dssp -----CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCT
T ss_pred CCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCcccccccccc
Confidence 33455699999999999 99999855 89999999999999999999999999999999999873 1
Q ss_pred cCCcccCCCCCCcEEECCCCCCCCcCCccccc-CCCCceeecCcccccCCCcccccCcccccccccc--cccccCCCCCc
Q 001974 71 EIPREFGRLFRLEALFLSDNDLVGEIPANLSY-CSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQ--RNNLTGGIPPF 147 (988)
Q Consensus 71 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~--~N~l~~~~~~~ 147 (988)
.+|... +.+|+ +++++|.+.+.+|..++. +.++..+++....+.. .....++.+.+. .|++++ +|..
T Consensus 132 ~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~ 201 (636)
T 4eco_A 132 NMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKA 201 (636)
T ss_dssp TCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred CchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHH
Confidence 233332 44566 777777777777666653 2233334443222210 111222333332 456665 5666
Q ss_pred ccCCCccceeeccccccCCC-----------------CCcccc--CcccccccccccccccCccchhhccccCccEEEec
Q 001974 148 IGNLTSLESISLAANAFGGN-----------------IPNSLG--QLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVP 208 (988)
Q Consensus 148 ~~~l~~L~~L~L~~N~l~~~-----------------~~~~~~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 208 (988)
|+++++|++|+|++|++++. +|..++ ++++|++|+|++|++.+.+|..+.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 66666666666666666653 566666 66666666666666666666666666666666666
Q ss_pred cCC-CCC-CCCCcccc-----cCCCCcceeccccccccccCc--ccccCCcccEEEeccccccCcccccccCCccccEEe
Q 001974 209 RNQ-FHG-SLPPSLGL-----TLPHLRLFQVHHNFFSGSIPI--SLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFN 279 (988)
Q Consensus 209 ~N~-i~~-~lp~~~~~-----~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~ 279 (988)
+|+ +++ .+|..++. .+++|+.|++++|+++ .+|. .+.++++|+.|++++|++.+.+| .|..+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 665 554 45554431 2356666666666666 5555 56666666666666666665555 566666666666
Q ss_pred cccccCCCCCCCchhhhcccccCCC-CcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEE
Q 001974 280 VAYNNLGSGESDEMSFMNSLANCSN-LRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLG 358 (988)
Q Consensus 280 L~~N~l~~~~~~~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 358 (988)
+++|.++.++. .+..+++ |++|++++|+++ .+|..+.... +++|+.|+
T Consensus 360 L~~N~l~~lp~-------~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~-----------------------l~~L~~L~ 408 (636)
T 4eco_A 360 LAYNQITEIPA-------NFCGFTEQVENLSFAHNKLK-YIPNIFDAKS-----------------------VSVMSAID 408 (636)
T ss_dssp CCSSEEEECCT-------TSEEECTTCCEEECCSSCCS-SCCSCCCTTC-----------------------SSCEEEEE
T ss_pred CCCCccccccH-------hhhhhcccCcEEEccCCcCc-ccchhhhhcc-----------------------cCccCEEE
Confidence 66666552221 2334444 444444444444 3333322211 11344444
Q ss_pred eeCccCCCccCcccC-------CCCccCeEecccccCCCCCCCC-CCCCCCCCEEEccccccccccccccc-------cc
Q 001974 359 MGGNQFTGTIPKEMG-------KLQNLEGMGLYDNQLSGEIPSS-LGNLSILSELLLNNNSLSGVIPSCLG-------SL 423 (988)
Q Consensus 359 L~~N~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~-------~l 423 (988)
+++|++++.+|..+. .+++|+.|+|++|+++ .+|.. +..+++|+.|+|++|+++...+..+. ++
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccccc
Confidence 444444333333333 3333333333333333 12221 22233333333333333311111111 11
Q ss_pred cccceeecCCCCCCccCchhhh--hhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcE
Q 001974 424 KQLAILHLFENGLNGTIPEEIF--NLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEE 501 (988)
Q Consensus 424 ~~L~~L~l~~N~l~~~~p~~~~--~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 501 (988)
++|+.|+|++|+++ .+|..++ .++.| +.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~----------------- 547 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYL-VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR----------------- 547 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-----------------
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCc-CEEECCCCCCCC-cChhhhcCCCCCEEECCCCc-----------------
Confidence 24444444444444 4444443 44444 444444444443 44444444444444443322
Q ss_pred EEecCccccccCCccccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcc
Q 001974 502 IYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEG 558 (988)
Q Consensus 502 L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~ 558 (988)
++++|++.+.+|..+..+++|+.|||++|+| +.+|.... ++|++|+|++|++..
T Consensus 548 -~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 -DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp -CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred -ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 1244555555555555555666666666665 33333211 456666666665543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-53 Score=506.64 Aligned_cols=498 Identities=19% Similarity=0.206 Sum_probs=359.2
Q ss_pred CCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCC
Q 001974 18 HFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIP 97 (988)
Q Consensus 18 ~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 97 (988)
..|.|.|+ |+ +++++++ .+|+.+. ++|++|+|++|+|++..|.+|.++++|++|+|++|++++..|
T Consensus 2 ~~C~~~~~-c~----------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 2 LSCDASGV-CD----------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67 (549)
T ss_dssp CEECTTSE-EE----------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred ccCCCCce-EE----------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh
Confidence 35899888 84 5567777 6776664 789999999999998889999999999999999999998888
Q ss_pred cccccCCCCceeecCcccccCCCcccccCcccccccccccccccC-CCCCcccCCCccceeeccccc-cCCCCCccccCc
Q 001974 98 ANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTG-GIPPFIGNLTSLESISLAANA-FGGNIPNSLGQL 175 (988)
Q Consensus 98 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 175 (988)
.+|+.+++|++|+|++|++++..|..|.++++|++|+|++|.+++ ..|..|+++++|++|++++|. +....+..|.++
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 999999999999999999998888889999999999999999986 357789999999999999998 454445789999
Q ss_pred ccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceecccccccccc--C-cccccCCccc
Q 001974 176 KELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSI--P-ISLSNASKLE 252 (988)
Q Consensus 176 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~--p-~~l~~l~~L~ 252 (988)
++|++|+|++|++++..|..+..+++|++|+++.|.+. .+|..++..+++|++|++++|++++.. | .....+++|+
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 99999999999999999999999999999999999987 778777777899999999999998753 2 2234577889
Q ss_pred EEEeccccccCcccc----cccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccc
Q 001974 253 FIEALDNSFSGKLSV----NFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSD 328 (988)
Q Consensus 253 ~L~l~~N~i~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 328 (988)
.|++++|.+.+..+. .+..+++|+.+++++|.+.+...-.......+..+.+|+.|++.++.+..... +
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~----- 299 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--F----- 299 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--S-----
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--c-----
Confidence 999999988765443 34567788888888888766543222222345566777777777776552100 0
Q ss_pred cccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCccc-CCCCccCeEecccccCCCCCC---CCCCCCCCCCE
Q 001974 329 QLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEM-GKLQNLEGMGLYDNQLSGEIP---SSLGNLSILSE 404 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~ 404 (988)
..++..+..+.+|+.|++++|++. .+|..+ .++++|++|+|++|++++.+| ..++.+++|+.
T Consensus 300 -------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 300 -------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp -------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred -------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 001111222344555555555555 444443 345555555555555554432 23455566666
Q ss_pred EEccccccccccc--cccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCC
Q 001974 405 LLLNNNSLSGVIP--SCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSS 482 (988)
Q Consensus 405 L~L~~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~ 482 (988)
|+|++|++++..+ ..+..+++|+.|++++|+++ .+|..+..++.| ++|++++|+++ .+|..+. ++|++|||++
T Consensus 366 L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~ 440 (549)
T 2z81_A 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR-VVKTCIP--QTLEVLDVSN 440 (549)
T ss_dssp EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCS-CCCTTSC--TTCSEEECCS
T ss_pred EEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcc-cccchhc--CCceEEECCC
Confidence 6666666654322 34556666666666666665 556555555555 66666666665 3333332 4677777777
Q ss_pred cccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCC
Q 001974 483 NNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVP 561 (988)
Q Consensus 483 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p 561 (988)
|+|++.+ +.+++|++|+|++|+|+ .+|. ...+++|+.|||++|++++.+|.. ..+.+|++|+|++|++++.+|
T Consensus 441 N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 441 NNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7777532 46677777777777777 5665 456777778888888887777764 566678888888888777766
Q ss_pred C
Q 001974 562 T 562 (988)
Q Consensus 562 ~ 562 (988)
.
T Consensus 515 ~ 515 (549)
T 2z81_A 515 R 515 (549)
T ss_dssp H
T ss_pred c
Confidence 3
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-53 Score=517.09 Aligned_cols=484 Identities=18% Similarity=0.193 Sum_probs=380.0
Q ss_pred CCCCCC-----CC--cee------------eeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEc-CCCccccc
Q 001974 12 SWNDSG-----HF--CEW------------KGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINL-MNNSIQGE 71 (988)
Q Consensus 12 ~w~~~~-----~~--c~~------------~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~ 71 (988)
+|+.++ ++ |.| .||+|+. .++|+.|+|+++++.|.+|++|+.|++|++|+| ++|.++|.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 897554 55 999 9999986 689999999999999999999999999999999 99999876
Q ss_pred CCcccCCC-CCCcE-----E---------E-CCCCCCC-----------CcCCcccccCCCCceeecCc--ccccCCCcc
Q 001974 72 IPREFGRL-FRLEA-----L---------F-LSDNDLV-----------GEIPANLSYCSRLTILFLGR--NKLMGSIPF 122 (988)
Q Consensus 72 ~p~~~~~l-~~L~~-----L---------~-Ls~n~l~-----------~~~p~~~~~l~~L~~L~L~~--N~i~~~~~~ 122 (988)
.|...... ..+.. + + .....+. ...+.......+++.+.++. |++++ +|.
T Consensus 364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~ 442 (876)
T 4ecn_A 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK 442 (876)
T ss_dssp TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG
T ss_pred ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH
Confidence 44321111 00000 0 0 0000000 01111112233444455544 77775 677
Q ss_pred cccCcccccccccccccccC-----------------CCCCccc--CCCccceeeccccccCCCCCccccCccccccccc
Q 001974 123 EFFSLYKLKQLAMQRNNLTG-----------------GIPPFIG--NLTSLESISLAANAFGGNIPNSLGQLKELKSLGL 183 (988)
Q Consensus 123 ~~~~l~~L~~L~L~~N~l~~-----------------~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 183 (988)
.|+++++|++|+|++|++++ .+|+.++ ++++|++|+|++|.+.+.+|..|+++++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 77777777777777777776 3888877 9999999999999988888999999999999999
Q ss_pred cccc-ccC-ccchhhcccc-------CccEEEeccCCCCCCCCC-cccccCCCCcceeccccccccccCcccccCCcccE
Q 001974 184 GANN-LSG-IIPPSIYNLS-------LLANFSVPRNQFHGSLPP-SLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEF 253 (988)
Q Consensus 184 ~~N~-l~~-~~~~~l~~l~-------~L~~L~L~~N~i~~~lp~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 253 (988)
++|+ +++ .+|..+..++ +|+.|+|++|++. .+|. ..+..+++|+.|+|++|+++ .+| .+..+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 9998 887 7888777776 9999999999998 8887 34458899999999999998 677 8899999999
Q ss_pred EEeccccccCcccccccCCcc-ccEEecccccCCCCCCCchhhhcccccC--CCCcEEEeecccCCCCCCchh---hhc-
Q 001974 254 IEALDNSFSGKLSVNFGGMKN-LSYFNVAYNNLGSGESDEMSFMNSLANC--SNLRTLIFAANKLRGALPHSI---ANL- 326 (988)
Q Consensus 254 L~l~~N~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~p~~~---~~~- 326 (988)
|++++|++. .+|..+..+++ |+.|++++|.++.++. .+..+ ++|+.|++++|++++.+|... ..+
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-------hhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 999999998 67777888988 9999999999885542 23344 459999999999987665432 111
Q ss_pred cccccEEEccCCccccCCCccc-cCCCcceEEEeeCccCCCccCcccCCC--------CccCeEecccccCCCCCCCCCC
Q 001974 327 SDQLQNLIMTSNQLHGSIPSGI-GNLVGLYRLGMGGNQFTGTIPKEMGKL--------QNLEGMGLYDNQLSGEIPSSLG 397 (988)
Q Consensus 327 ~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l--------~~L~~L~L~~N~l~~~~p~~~~ 397 (988)
..+|+.|+|++|+++ .+|..+ ..+++|+.|+|++|+|+ .+|..+... ++|+.|+|++|+|+ .+|..+.
T Consensus 672 ~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 672 GINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp CCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred CCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhh
Confidence 137999999999999 566555 48899999999999999 666654332 39999999999999 7888887
Q ss_pred --CCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCcccccccccc
Q 001974 398 --NLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYL 475 (988)
Q Consensus 398 --~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L 475 (988)
.+++|+.|+|++|+|++ +|..+..+++|+.|+|++|+ ++++|++.+.+|..+..+++|
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------------------~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------------------DAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------------------CTTCCBCCCCCCTTGGGCSSC
T ss_pred hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------------------CcccccccccChHHHhcCCCC
Confidence 99999999999999997 78889999999999999987 567888888889999999999
Q ss_pred ceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCccc
Q 001974 476 RVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLS 534 (988)
Q Consensus 476 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 534 (988)
+.|+|++|+| +.+|..+. ++|+.|+|++|++....+..+.....+..+.|++|++.
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 9999999999 58888766 68999999999988777777777777778888887765
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-52 Score=499.59 Aligned_cols=506 Identities=19% Similarity=0.188 Sum_probs=416.2
Q ss_pred EEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccc
Q 001974 37 LNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKL 116 (988)
Q Consensus 37 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i 116 (988)
++.++.+++ .+|..+. +++++|+|++|+|++..+.+|.++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 455566666 4555443 4688899999998887788888899999999999988877778888888999999999988
Q ss_pred cCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCC-CCccccCcccccccccccccccCccchh
Q 001974 117 MGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGN-IPNSLGQLKELKSLGLGANNLSGIIPPS 195 (988)
Q Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 195 (988)
++..|.+|.++++|++|++++|++++..+..|+++++|++|++++|.+++. +|..|+++++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 877778888899999999999988866555788888999999999988863 5888888899999999999888777888
Q ss_pred hccccCc----cEEEeccCCCCCCCCCcccccCCCCcceecccccccc-ccCcccccCCcccEEEeccccc------cCc
Q 001974 196 IYNLSLL----ANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSG-SIPISLSNASKLEFIEALDNSF------SGK 264 (988)
Q Consensus 196 l~~l~~L----~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~l~~N~i------~~~ 264 (988)
+..+++| +.|++++|.+. .++...+... +|+.|++++|.... ..+..+..+..++.+.+..+.+ ...
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred ccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 8888888 88889999888 5555555444 78888888886542 3455566777777666554322 223
Q ss_pred ccccccCCcc--ccEEecccc-cCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccc
Q 001974 265 LSVNFGGMKN--LSYFNVAYN-NLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLH 341 (988)
Q Consensus 265 ~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~ 341 (988)
....|.++.+ ++.++++++ .+....+. .+..+++|++|++++|.++ .+|..+... .|+.|++++|.+.
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~ 317 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIID------LFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG 317 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTT------TTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS
T ss_pred chhhhccccccchhhhhhhcchhhhhhchh------hhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc
Confidence 3334444443 456777766 44443332 5678899999999999998 688887776 7999999999998
Q ss_pred cCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCC--CCCCCCCCCCCEEEccccccccccccc
Q 001974 342 GSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEI--PSSLGNLSILSELLLNNNSLSGVIPSC 419 (988)
Q Consensus 342 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~ 419 (988)
.+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|++++.. |..+.++++|+.|++++|.+.+..+.
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 391 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN- 391 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-
Confidence 5665 5788999999999999866655 78899999999999998554 67788999999999999999965555
Q ss_pred cccccccceeecCCCCCCccCc-hhhhhhcccccceecccccccCCCccccccccccceeecCCcccc-cccCcccccCC
Q 001974 420 LGSLKQLAILHLFENGLNGTIP-EEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLS-GEIPSQLGLCS 497 (988)
Q Consensus 420 ~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~ 497 (988)
+..+++|+.|++++|.+.+..| ..+.+++.| ++|++++|.+++..|..+..+++|+.|+|++|+++ +.+|..|+.++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 9999999999999999986655 467788888 99999999999999999999999999999999998 68999999999
Q ss_pred CCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCCC
Q 001974 498 YLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPTK 563 (988)
Q Consensus 498 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~~ 563 (988)
+|+.|+|++|++++..|..|..+++|+.|+|++|++++.+|.. ..+++|++|++++|+++|.+|..
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999999999998999999999999999999999998875 77889999999999999999875
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-51 Score=492.58 Aligned_cols=493 Identities=19% Similarity=0.165 Sum_probs=427.7
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceee
Q 001974 31 HRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILF 110 (988)
Q Consensus 31 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (988)
+..++.|||++|++++..+.+|..+++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35799999999999988888999999999999999999988889999999999999999999988889999999999999
Q ss_pred cCcccccCCCcccccCcccccccccccccccC-CCCCcccCCCccceeeccccccCCCCCccccCcccc----ccccccc
Q 001974 111 LGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTG-GIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKEL----KSLGLGA 185 (988)
Q Consensus 111 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~L~~ 185 (988)
|++|++++..+..|.++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..|+.+++| +.|++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99999997777789999999999999999986 468999999999999999999998888899999999 8999999
Q ss_pred ccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceecccccc------ccccCcccccCC--cccEEEec
Q 001974 186 NNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFF------SGSIPISLSNAS--KLEFIEAL 257 (988)
Q Consensus 186 N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l------~~~~p~~l~~l~--~L~~L~l~ 257 (988)
|.++++.|..+... +|+.|++++|......-......+++++.+.+..+.+ .......+..+. .++.++++
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 99998888888776 8999999998654222222334566666655543322 222223333333 36777888
Q ss_pred cc-cccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEcc
Q 001974 258 DN-SFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMT 336 (988)
Q Consensus 258 ~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~ 336 (988)
++ .+.+..+..|..+++|+.|++++|.++.++. .+..+ +|++|++++|++. .+|.. ..++|+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~ 333 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFT 333 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEE
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCccc-ccCcc---cccccCEEeCc
Confidence 88 7888888999999999999999999986543 35566 9999999999998 77763 23479999999
Q ss_pred CCccccCCCccccCCCcceEEEeeCccCCCcc--CcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccc
Q 001974 337 SNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTI--PKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSG 414 (988)
Q Consensus 337 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 414 (988)
+|.+.+..+. ..+++|+.|++++|++++.. |..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+.+
T Consensus 334 ~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 334 SNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp SCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred CCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 9999876665 78899999999999998554 67889999999999999999955444 9999999999999999998
Q ss_pred ccc-cccccccccceeecCCCCCCccCchhhhhhcccccceeccccccc-CCCccccccccccceeecCCcccccccCcc
Q 001974 415 VIP-SCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLV-GSIPTKIGNLKYLRVFNVSSNNLSGEIPSQ 492 (988)
Q Consensus 415 ~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 492 (988)
..| ..+..+++|+.|++++|++.+..|..+.+++.| +.|++++|.++ +.+|..+..+++|+.|+|++|++++..|..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 766 578999999999999999998888899999999 99999999998 678999999999999999999999888999
Q ss_pred cccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc
Q 001974 493 LGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF 540 (988)
Q Consensus 493 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 540 (988)
|+.+++|++|+|++|++++..|..|..+++|+.|++++|.+++.+|..
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999999988889999999999999999999988764
No 16
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=7.3e-52 Score=445.34 Aligned_cols=271 Identities=25% Similarity=0.408 Sum_probs=214.6
Q ss_pred CCCCCCceeccccceeEEEEEEC-----CCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFD-----QDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
++|.+.+.||+|+||+||+|++. .+++.||||+++.......++|.+|+++|++++|||||+++|+|.+ +
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----~ 87 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----G 87 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----C
Confidence 46788899999999999999874 3578999999987666667889999999999999999999999754 4
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCc--hhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQK--DVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~--~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
+..++|||||++|+|.++++....... ........+++.+++.|+.|||.||+|||++ +||||||||+|||++++
T Consensus 88 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 88 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN 164 (299)
T ss_dssp SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCC
Confidence 789999999999999999975421000 0000113699999999999999999999998 99999999999999999
Q ss_pred CcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchH
Q 001974 816 MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLH 894 (988)
Q Consensus 816 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 894 (988)
+.+||+|||+|+........ .......||+.|||||++.+..++.++|||||||++|||+| |+.||..... .
T Consensus 165 ~~~Ki~DFGla~~~~~~~~~--~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-----~ 237 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTDYY--RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-----N 237 (299)
T ss_dssp GCEEECCCSCHHHHTGGGCE--EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-----H
T ss_pred CcEEECCcccceecCCCCce--eecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH-----H
Confidence 99999999999865443221 12233468999999999999999999999999999999999 9999874211 1
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
+... .+.. ......+..+|+++.+|+.+||+.||++|||++||++.|+++.++
T Consensus 238 ~~~~-----~i~~----------------------~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 238 EVIE-----CITQ----------------------GRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHH-----HHHH----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHc----------------------CCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 1111 0100 011123446888999999999999999999999999999998765
Q ss_pred h
Q 001974 975 L 975 (988)
Q Consensus 975 ~ 975 (988)
-
T Consensus 291 ~ 291 (299)
T 4asz_A 291 S 291 (299)
T ss_dssp S
T ss_pred C
Confidence 3
No 17
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.3e-51 Score=447.89 Aligned_cols=270 Identities=26% Similarity=0.420 Sum_probs=209.3
Q ss_pred CCCCCCceeccccceeEEEEEEC-----CCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFD-----QDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
++|.+.++||+|+||+||+|++. .+++.||||+++.......++|.+|+++|++++|||||+++|+|.+ +
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----~ 115 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-----G 115 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----C
Confidence 45677889999999999999974 3578999999987666667889999999999999999999999754 4
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCch----hhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKD----VEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD 813 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~----~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 813 (988)
+..++|||||++|+|.++++........ ......+++|.+++.|+.|||.||+|||++ +||||||||+|||++
T Consensus 116 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 116 RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVG 192 (329)
T ss_dssp SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEEC
Confidence 7899999999999999999765432110 111124699999999999999999999998 999999999999999
Q ss_pred CCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcc
Q 001974 814 NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLN 892 (988)
Q Consensus 814 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~ 892 (988)
+++.+||+|||+|+........ .......||+.|||||++.+..++.++|||||||++|||+| |+.||.....
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~--~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~---- 266 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDYY--RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN---- 266 (329)
T ss_dssp TTTEEEECCCC------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH----
T ss_pred CCCcEEEcccccceeccCCCcc--eecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH----
Confidence 9999999999999865443221 11223569999999999999999999999999999999999 9999874211
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
.+... .+.. ......+..+++++.+|+.+||+.||++||||+||++.|+.+.
T Consensus 267 -~~~~~-----~i~~----------------------g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~ 318 (329)
T 4aoj_A 267 -TEAID-----CITQ----------------------GRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALA 318 (329)
T ss_dssp -HHHHH-----HHHH----------------------TCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH
T ss_pred -HHHHH-----HHHc----------------------CCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHh
Confidence 11110 0100 0111234468889999999999999999999999999999987
Q ss_pred HH
Q 001974 973 NA 974 (988)
Q Consensus 973 ~~ 974 (988)
+.
T Consensus 319 ~~ 320 (329)
T 4aoj_A 319 QA 320 (329)
T ss_dssp HS
T ss_pred hC
Confidence 64
No 18
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-51 Score=438.85 Aligned_cols=266 Identities=28% Similarity=0.443 Sum_probs=207.6
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
...++|++.++||+|+||+||+|++. ..||||+++... ....+.|.+|++++++++|||||+++|+|..
T Consensus 33 i~~~~l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~------ 103 (307)
T 3omv_A 33 IEASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK------ 103 (307)
T ss_dssp CCTTSCCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------
T ss_pred EcHHHeEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC------
Confidence 34567889999999999999999874 259999987433 2345789999999999999999999998642
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..+||||||++|+|.+++.... .++++.++..|+.|||.||+|||++ +||||||||+|||++++++
T Consensus 104 ~~~~iVmEy~~gGsL~~~l~~~~----------~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~ 170 (307)
T 3omv_A 104 DNLAIVTQWCEGSSLYKHLHVQE----------TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLT 170 (307)
T ss_dssp SSCEEEEECCSSCBHHHHHHTSC----------CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEE
T ss_pred CeEEEEEEcCCCCCHHHHHhhcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCc
Confidence 46799999999999999997554 3689999999999999999999998 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCC---CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG---SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
+||+|||+|+........ .......||+.|||||++.+ .+|+.++|||||||++|||+||+.||......
T Consensus 171 ~Ki~DFGla~~~~~~~~~--~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~----- 243 (307)
T 3omv_A 171 VKIGDFGLATVKSRWSGS--QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR----- 243 (307)
T ss_dssp EEECCCSSCBC--------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH-----
T ss_pred EEEeeccCceecccCCcc--eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH-----
Confidence 999999999865443221 12234579999999999864 46899999999999999999999998642111
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
......+... ...+.+ ...+..+|+++.+|+.+||+.||++||||+||++.|+.++..
T Consensus 244 ~~~~~~~~~~---~~~p~~-------------------~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~ 301 (307)
T 3omv_A 244 DQIIFMVGRG---YASPDL-------------------SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp HHHHHHHHTT---CCCCCS-------------------TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---CCCCCc-------------------ccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence 1111111110 001100 012346788999999999999999999999999999988765
Q ss_pred hh
Q 001974 975 LL 976 (988)
Q Consensus 975 ~~ 976 (988)
++
T Consensus 302 lp 303 (307)
T 3omv_A 302 LP 303 (307)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 19
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.3e-50 Score=437.48 Aligned_cols=266 Identities=21% Similarity=0.332 Sum_probs=209.2
Q ss_pred CCCCCceeccccceeEEEEEEC-----CCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 664 GFSSTHLIGMGSFGSVYKGAFD-----QDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 664 ~y~~~~~lg~G~~g~Vy~a~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
++++.++||+|+||+||+|++. .+++.||||+++.... ...++|.+|+.++++++|||||+++|+|.. +
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-----~ 101 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK-----D 101 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-----S
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE-----C
Confidence 4567789999999999999973 3578999999975433 345789999999999999999999999754 4
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCch-----hhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKD-----VEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~-----~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
+..++|||||++|+|.+++......... .......+++.++..|+.|||+||+|||++ +||||||||+|||+
T Consensus 102 ~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl 178 (308)
T 4gt4_A 102 QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLV 178 (308)
T ss_dssp SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEE
Confidence 7789999999999999999654321100 001123689999999999999999999998 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDL 891 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~ 891 (988)
++++++||+|||+|+........ .......||+.|||||++.+..++.++|||||||++|||+| |+.||.....
T Consensus 179 ~~~~~~Ki~DFGlar~~~~~~~~--~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--- 253 (308)
T 4gt4_A 179 YDKLNVKISDLGLFREVYAADYY--KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--- 253 (308)
T ss_dssp CGGGCEEECCSCCBCGGGGGGCB--CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH---
T ss_pred CCCCCEEECCcccceeccCCCce--eEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH---
Confidence 99999999999999866443221 11234569999999999999999999999999999999999 8999874311
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSV 971 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 971 (988)
.+... .+.. ......+..+|.++.+||.+||+.||++||||+||++.|+++
T Consensus 254 --~~~~~-----~i~~----------------------~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 254 --QDVVE-----MIRN----------------------RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp --HHHHH-----HHHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred --HHHHH-----HHHc----------------------CCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 11111 0100 001123446889999999999999999999999999998753
No 20
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=7.6e-51 Score=442.72 Aligned_cols=252 Identities=23% Similarity=0.325 Sum_probs=202.7
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
-++|++++.||+|+||+||+|+++.+|+.||||+++... ....+.+.+|++++++++|||||++++++. +++.
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~-----~~~~ 97 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFE-----ENGS 97 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEE-----ECCE
Confidence 368999999999999999999999999999999997543 234567999999999999999999999954 4588
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.|||||||+||+|.+++..... ..+++.+++.|+.||+.||+|||++ +||||||||+|||+++++.+|
T Consensus 98 ~yiVmEy~~gg~L~~~i~~~~~---------~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vK 165 (350)
T 4b9d_A 98 LYIVMDYCEGGDLFKRINAQKG---------VLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQ 165 (350)
T ss_dssp EEEEEECCTTCBHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEE
T ss_pred EEEEEeCCCCCcHHHHHHHcCC---------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEE
Confidence 9999999999999999964432 2578999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||+|+....... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||... ........
T Consensus 166 l~DFGla~~~~~~~~----~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~~~~ 236 (350)
T 4b9d_A 166 LGDFGIARVLNSTVE----LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG-----SMKNLVLK 236 (350)
T ss_dssp ECSTTEESCCCHHHH----HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHH
T ss_pred EcccccceeecCCcc----cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHH
Confidence 999999987654221 122356999999999999999999999999999999999999998632 11111111
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
..... ....+..+++++.+|+.+||+.||++|||++|+++
T Consensus 237 i~~~~---------------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 237 IISGS---------------------------FPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHHTC---------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHcCC---------------------------CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 11100 00112356788999999999999999999999986
No 21
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=2.1e-50 Score=438.48 Aligned_cols=250 Identities=23% Similarity=0.321 Sum_probs=209.1
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceEE
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKAL 742 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 742 (988)
+.|+..++||+|+||+||+|+++.+|+.||||+++.......+.+.+|+++|++++|||||++++++. +++..||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~i 148 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELWV 148 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEEE
Confidence 56899999999999999999999999999999998766666678999999999999999999999954 4588999
Q ss_pred EEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEee
Q 001974 743 VYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVGD 822 (988)
Q Consensus 743 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~D 822 (988)
|||||++|+|.+++.. .++++.++..|+.||+.||+|||++ +||||||||+|||++.+|.+||+|
T Consensus 149 vmEy~~gg~L~~~l~~------------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~D 213 (346)
T 4fih_A 149 VMEFLEGGALTDIVTH------------TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSD 213 (346)
T ss_dssp EECCCTTEEHHHHHHH------------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECC
T ss_pred EEeCCCCCcHHHHHHc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEec
Confidence 9999999999999853 2589999999999999999999999 999999999999999999999999
Q ss_pred ecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHh
Q 001974 823 FGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALL 902 (988)
Q Consensus 823 fG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 902 (988)
||+|+........ ....+||+.|||||++.+..|+.++||||+||++|||++|+.||... ......
T Consensus 214 FGla~~~~~~~~~----~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~----- 279 (346)
T 4fih_A 214 FGFCAQVSKEVPR----RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPLKAM----- 279 (346)
T ss_dssp CTTCEECCSSSCC----BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHH-----
T ss_pred CcCceecCCCCCc----ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHH-----
Confidence 9999876543221 22457999999999999999999999999999999999999998632 111111
Q ss_pred hhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 903 DHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 903 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
..+.....+ . ......+++++.+|+.+||+.||++|||++|+++
T Consensus 280 ~~i~~~~~~----~----------------~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 280 KMIRDNLPP----R----------------LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHHHHSSCC----C----------------CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHcCCCC----C----------------CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111110000 0 1112356788999999999999999999999876
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-49 Score=473.63 Aligned_cols=485 Identities=17% Similarity=0.116 Sum_probs=356.1
Q ss_pred CCceeeeeEEeC--CCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCc
Q 001974 18 HFCEWKGITCGL--RHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGE 95 (988)
Q Consensus 18 ~~c~~~~v~c~~--~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 95 (988)
+-|++.+++... ....++.|||++|++++..|.+|+.+++|++|+|++|+|++..|.+|..+++|++|+|++|++++.
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 345666665543 236899999999999988899999999999999999999999999999999999999999999988
Q ss_pred CCcccccCCCCceeecCcccccCC-CcccccCcccccccccccccccCCC-CCcccCCCccceeeccccccCCCCCcccc
Q 001974 96 IPANLSYCSRLTILFLGRNKLMGS-IPFEFFSLYKLKQLAMQRNNLTGGI-PPFIGNLTSLESISLAANAFGGNIPNSLG 173 (988)
Q Consensus 96 ~p~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 173 (988)
.|..|+.+++|++|+|++|++++. .|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|++++..|..|+
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 777899999999999999999863 5678999999999999999844344 46899999999999999999988999999
Q ss_pred CcccccccccccccccCccchhhccccCccEEEeccCCCCCCC--CCcccccCCCCcceeccccccccccC----ccccc
Q 001974 174 QLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSL--PPSLGLTLPHLRLFQVHHNFFSGSIP----ISLSN 247 (988)
Q Consensus 174 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~l--p~~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~ 247 (988)
.+++|++|+++.|.+....+..+..+++|++|++++|++.+.. |..+...+++|+.|++++|.+++..+ ..+..
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 9999999999999998544444567999999999999998431 44455678899999999999987544 34567
Q ss_pred CCcccEEEeccccccCccc------ccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCc
Q 001974 248 ASKLEFIEALDNSFSGKLS------VNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPH 321 (988)
Q Consensus 248 l~~L~~L~l~~N~i~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 321 (988)
+.+|+.+++++|.+.+... ..+..+.+|+.|++.++.+...... ......+....+|++|++++|+++ .+|.
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~l~~~~~~~~~L~~L~l~~n~l~-~ip~ 327 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPC 327 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS-CCCCHHHHHSTTCCEEEEESSCCC-CCCH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhc-ccchhhhhhcccceEEEeccCccc-cCCH
Confidence 8899999999999877432 3456788999999999887542110 000001223456666666666665 5555
Q ss_pred hhhhccccccEEEccCCccccCCC---ccccCCCcceEEEeeCccCCCccC--cccCCCCccCeEecccccCCCCCCCCC
Q 001974 322 SIANLSDQLQNLIMTSNQLHGSIP---SGIGNLVGLYRLGMGGNQFTGTIP--KEMGKLQNLEGMGLYDNQLSGEIPSSL 396 (988)
Q Consensus 322 ~~~~~~~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~ 396 (988)
.++...++|++|++++|++.+.+| ..+..+++|+.|+|++|++++..+ ..+..+++|++|+|++|+++ .+|..+
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 406 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh
Confidence 554323355555555555554432 224445555555555555553221 23444555555555555554 344444
Q ss_pred CCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccc
Q 001974 397 GNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLR 476 (988)
Q Consensus 397 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~ 476 (988)
..+++|++|+|++| +++ .+|..+. +.+ ++|++++|++++.+ ..+++|+
T Consensus 407 ~~~~~L~~L~Ls~N------------------------~l~-~l~~~~~--~~L-~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 407 QWPEKMRFLNLSST------------------------GIR-VVKTCIP--QTL-EVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp CCCTTCCEEECTTS------------------------CCS-CCCTTSC--TTC-SEEECCSSCCSCCC----CCCTTCC
T ss_pred cccccccEEECCCC------------------------Ccc-cccchhc--CCc-eEEECCCCChhhhc----ccCChhc
Confidence 44444555555554 444 3333321 233 56666666665432 4577888
Q ss_pred eeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcc
Q 001974 477 VFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPK 539 (988)
Q Consensus 477 ~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 539 (988)
.|+|++|+|+ .+|. .+.+++|+.|+|++|++++.+|..|..+++|+.|+|++|.+.+..|.
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 8888888888 6776 46788899999999999988888888899999999999998887773
No 23
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.9e-50 Score=437.69 Aligned_cols=270 Identities=22% Similarity=0.242 Sum_probs=214.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.+.|+..++||+|+||+||+|+++.+|+.||||+++.... ..+|+.++++++|||||++++++. +++..|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~-----~~~~~~ 126 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVR-----EGPWVN 126 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEE
Confidence 3567888899999999999999999999999999975432 247999999999999999999954 458899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC-cEEE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM-IAHV 820 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kL 820 (988)
||||||+||+|.++++.. ..+++.++..|+.||+.||+|||++ +||||||||+|||++.+| .+||
T Consensus 127 ivmEy~~gg~L~~~l~~~-----------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl 192 (336)
T 4g3f_A 127 IFMELLEGGSLGQLIKQM-----------GCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAAL 192 (336)
T ss_dssp EEECCCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEE
T ss_pred EEEeccCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEE
Confidence 999999999999999643 3699999999999999999999998 999999999999999988 6999
Q ss_pred eeecccccccccccccc-eeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQ-SCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+|+.......... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||......+ ....+.
T Consensus 193 ~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~--~~~~i~- 269 (336)
T 4g3f_A 193 CDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP--LCLKIA- 269 (336)
T ss_dssp CCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC--CHHHHH-
T ss_pred eeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH--HHHHHH-
Confidence 99999987654332211 11233569999999999999999999999999999999999999997432221 110000
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh---h
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL---L 976 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~---~ 976 (988)
... . .....+..+++++.+++.+||+.||++|||++|+++.|.....+. .
T Consensus 270 --~~~------------~-------------~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~ 322 (336)
T 4g3f_A 270 --SEP------------P-------------PIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLK 322 (336)
T ss_dssp --HSC------------C-------------GGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSC
T ss_pred --cCC------------C-------------CchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhcc
Confidence 000 0 001123467888999999999999999999999999998887653 4
Q ss_pred hhcccCCcc
Q 001974 977 EAWNCTGEE 985 (988)
Q Consensus 977 ~~~~~~~~~ 985 (988)
.+|....++
T Consensus 323 hPw~~~~~~ 331 (336)
T 4g3f_A 323 SPWKGEYKE 331 (336)
T ss_dssp SCSSSSCCC
T ss_pred CCCcCCCCC
Confidence 466554433
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.7e-49 Score=476.59 Aligned_cols=557 Identities=18% Similarity=0.149 Sum_probs=303.7
Q ss_pred cCCccccCCCCCCCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCc
Q 001974 4 HDPQGILNSWNDSGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLE 83 (988)
Q Consensus 4 ~~~~~~~~~w~~~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 83 (988)
.|+-..+++|.... +..|..|.|...... .|.++.+++ .+|+.+. +++++|||++|+|+++.|.+|.++++|+
T Consensus 7 ~~~~~~~~~~~~~~-p~~~~~c~~~~~~~~---~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~ 79 (635)
T 4g8a_A 7 KDDDDKLAAANSSI-PESWEPCVEVVPNIT---YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQ 79 (635)
T ss_dssp -------------------CCSEEEETTTE---EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCcchhhcccCCC-CCCCCCccccCCCCE---EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCC
Confidence 35556677886443 456777777644333 367777777 5666553 4688999999999877778899999999
Q ss_pred EEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccc
Q 001974 84 ALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANA 163 (988)
Q Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (988)
+|+|++|+|++..|.+|+++++|++|+|++|+|++..+++|.++++|++|+|++|++++..+..|+++++|++|+|++|+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 99999999987777888999999999999999987777888899999999999999987777778899999999999998
Q ss_pred cCCC-CCccccCcccccccccccccccCccchhhccccCcc----EEEeccCCCCCCCCCcccccCCCCcceeccccccc
Q 001974 164 FGGN-IPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLA----NFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFS 238 (988)
Q Consensus 164 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~----~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~ 238 (988)
++.. .|..++.+++|++|+|++|+|++..+..+..+.+++ .++++.|.+. .++...+ ....+..+++++|...
T Consensus 160 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDS 237 (635)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSS
T ss_pred cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhccccc
Confidence 8753 577788889999999999999888888887776654 5788888887 5666555 3345667777777655
Q ss_pred c-ccCcccccCCcccEEEecccc------ccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEee
Q 001974 239 G-SIPISLSNASKLEFIEALDNS------FSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFA 311 (988)
Q Consensus 239 ~-~~p~~l~~l~~L~~L~l~~N~------i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls 311 (988)
. ..+..+..+..++...+..+. +.......+..+..+....+..+........ ....+....+++.+++.
T Consensus 238 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 238 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG---IIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEE---CTTTTGGGTTCSEEEEE
T ss_pred ccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc---hhhhhhhhccccccccc
Confidence 3 223345556666555554332 2222233344444444444444332211111 01123334444555555
Q ss_pred cccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCC-
Q 001974 312 ANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSG- 390 (988)
Q Consensus 312 ~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~- 390 (988)
+|.+....+ +.. ...++.|++.+|.+....+ ..+..|+.+++++|.+.. +.....+++|+.|++++|.+..
T Consensus 315 ~~~~~~~~~--~~~-~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 315 SVTIERVKD--FSY-NFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp SCEEEECGG--GGS-CCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC--BCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccc--ccc-chhhhhhhcccccccCcCc---ccchhhhhcccccccCCC--Ccccccccccccchhhccccccc
Confidence 544432111 111 1234555555554443222 123344444444444431 1122344445555555544431
Q ss_pred -CCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCch-hhhhhcccccceecccccccCCCccc
Q 001974 391 -EIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPE-EIFNLTYLSNSLNLARNHLVGSIPTK 468 (988)
Q Consensus 391 -~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~l~~~L~ls~N~l~~~~p~~ 468 (988)
..+..+..+.+|+.|++..|.+.. .+..+..+++|+.+++++|...+..+. .+.++..+ +.++++.|.+.+..|..
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGI 464 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC-CEEECTTSCCEECCTTT
T ss_pred cccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccc-ccccccccccccccccc
Confidence 122333344444444444444442 233344444444444444444432222 22333333 44444444444444444
Q ss_pred cccccccceeecCCccc-ccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCCCC
Q 001974 469 IGNLKYLRVFNVSSNNL-SGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDLSL 546 (988)
Q Consensus 469 ~~~l~~L~~L~ls~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L 546 (988)
+..++.|+.|+|++|.+ .+.+|..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++.+|.. ..+++|
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 44444444444444442 2234444444444444555444444444444444444444555544444444432 333444
Q ss_pred cEEeCCCCcCcccCCCC-ccc-CcccccccccccccCC
Q 001974 547 EYLNLSFNDLEGEVPTK-GVF-ANISRISVAGFNRLCG 582 (988)
Q Consensus 547 ~~l~l~~N~l~~~~p~~-~~~-~~~~~~~~~~n~~lcg 582 (988)
++|+|++|+|++.+|.. ..+ .++..+.+.+||+.|.
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 44455544444444432 111 2333444444444444
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=470.94 Aligned_cols=465 Identities=19% Similarity=0.194 Sum_probs=322.0
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcc
Q 001974 35 TVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRN 114 (988)
Q Consensus 35 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 114 (988)
+.+|+++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 45788888887 5666665 77888888888888766677888888888888888888777777888888888888888
Q ss_pred cccCCCcccccCcccccccccccccccC-CCCCcccCCCccceeeccccccCCCCCccccCcccc--cccccccccc--c
Q 001974 115 KLMGSIPFEFFSLYKLKQLAMQRNNLTG-GIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKEL--KSLGLGANNL--S 189 (988)
Q Consensus 115 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~ 189 (988)
+|+ .+|.. .+++|++|+|++|.+++ .+|..|+++++|++|++++|++++ ..|..+++| ++|+|++|++ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 877 45544 67777788888777775 356777777777777777777764 356666666 7777777777 5
Q ss_pred Cccchhhcccc-CccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCccccc
Q 001974 190 GIIPPSIYNLS-LLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVN 268 (988)
Q Consensus 190 ~~~~~~l~~l~-~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~ 268 (988)
+..|..+..+. +...+++++|++.+.++...+..+++|+.|++++|...... ..+.+.++ .
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----------------~~~~~~~~-~ 215 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-----------------SYFLSILA-K 215 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT-----------------HHHHHHHH-G
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc-----------------ceeecchh-h
Confidence 66666666654 23345566666655555555545555555555554400000 00222222 3
Q ss_pred ccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccc
Q 001974 269 FGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGI 348 (988)
Q Consensus 269 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~ 348 (988)
|..+++|+.|++++|.++...... ... ....+ +|++|++++|++++.+|..+
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~--~~~-~~~~~-------------------------~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIR--ILQ-LVWHT-------------------------TVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHH--HHH-HHHTS-------------------------SCSEEEEEEEEEESCCCCCC
T ss_pred hccccchhhccccccccCHHHHHH--HHH-HhhhC-------------------------cccEEEeecccccCccccch
Confidence 444444445554444443210000 000 00112 45555555555555555555
Q ss_pred -----cCCCcceEEEeeCccCCCccC-cccCCC---CccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccc
Q 001974 349 -----GNLVGLYRLGMGGNQFTGTIP-KEMGKL---QNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSC 419 (988)
Q Consensus 349 -----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 419 (988)
..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence 7777888888888887 344 444444 56888888888876322 1257788888888888888778888
Q ss_pred cccccccceeecCCCCCCc--cCchhhhhhcccccceecccccccCCCccc-cccccccceeecCCcccccccCcccccC
Q 001974 420 LGSLKQLAILHLFENGLNG--TIPEEIFNLTYLSNSLNLARNHLVGSIPTK-IGNLKYLRVFNVSSNNLSGEIPSQLGLC 496 (988)
Q Consensus 420 ~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l 496 (988)
++.+++|+.|++++|++++ .+|..+..++.| ++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+.
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-- 420 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-- 420 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--
Confidence 8888888888888888875 556677788888 88888888888756654 77888999999999999888887765
Q ss_pred CCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcc-cccCCCCcEEeCCCCcCcccCCC
Q 001974 497 SYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPK-FLEDLSLEYLNLSFNDLEGEVPT 562 (988)
Q Consensus 497 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~L~~l~l~~N~l~~~~p~ 562 (988)
++|+.|+|++|+++ .+|..+..+++|+.|||++|+|++.++. +..+++|++|+|++|++++.++.
T Consensus 421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 78999999999998 8888888999999999999999977666 46778899999999999887663
No 26
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=2.4e-50 Score=431.37 Aligned_cols=250 Identities=21% Similarity=0.288 Sum_probs=208.0
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
++|++.+.||+|+||+||+|+++.+|+.||||++... .....+.+.+|++++++++|||||++++++ ++++.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~~~ 106 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF-----QDDEK 106 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSSE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EeCCE
Confidence 5699999999999999999999999999999999743 234457899999999999999999999994 45688
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.|+||||++||+|.+++... ..+++.++..|+.||+.||+|||++ +||||||||+|||++.++.+|
T Consensus 107 ~yivmEy~~gG~L~~~i~~~-----------~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vK 172 (311)
T 4aw0_A 107 LYFGLSYAKNGELLKYIRKI-----------GSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQ 172 (311)
T ss_dssp EEEEECCCTTEEHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEE
T ss_pred EEEEEecCCCCCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEE
Confidence 99999999999999999643 3699999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||+|+........ ......+||+.|||||++.+..|+.++||||+||++|||+||+.||... +.......
T Consensus 173 l~DFGla~~~~~~~~~--~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~ 245 (311)
T 4aw0_A 173 ITDFGTAKVLSPESKQ--ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG-----NEGLIFAK 245 (311)
T ss_dssp ECCCTTCEECCTTTTC--CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEEcCCceecCCCCCc--ccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHH
Confidence 9999999876543221 1223457999999999999999999999999999999999999998632 11111111
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+. ......+..+++++.+|+.+||+.||++|||++|++.
T Consensus 246 -----i~-----------------------~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 246 -----II-----------------------KLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp -----HH-----------------------HTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred -----HH-----------------------cCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence 10 0111223356778999999999999999999998753
No 27
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.5e-49 Score=419.62 Aligned_cols=246 Identities=23% Similarity=0.357 Sum_probs=192.2
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
++|++.+.||+|+||+||+|++..+|+.||+|+++... ....+.+.+|++++++++||||+++++++ .+++.
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~~ 87 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI-----KSKDE 87 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSSE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EECCE
Confidence 68999999999999999999999999999999996432 23346799999999999999999999995 45588
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+ +|+|.+++.... ++++.++..++.||+.||+|||++ +|+||||||+|||+++++.+|
T Consensus 88 ~~ivmEy~-~g~L~~~l~~~~-----------~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vk 152 (275)
T 3hyh_A 88 IIMVIEYA-GNELFDYIVQRD-----------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVK 152 (275)
T ss_dssp EEEEEECC-CEEHHHHHHHSC-----------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEE
T ss_pred EEEEEeCC-CCCHHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEE
Confidence 99999999 789999986543 699999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+|+....... .....||+.|||||++.+..+ +.++||||+||++|||+||+.||... .......
T Consensus 153 l~DFGla~~~~~~~~-----~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~-----~~~~~~~ 222 (275)
T 3hyh_A 153 IADFGLSNIMTDGNF-----LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVLFK 222 (275)
T ss_dssp ECCSSCC--------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHH
T ss_pred EeecCCCeecCCCCc-----cCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC-----CHHHHHH
Confidence 999999986544322 123569999999999998876 57999999999999999999998631 1111111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
. +. ......+..+++++.+++.+||+.||++|||++|+++
T Consensus 223 ~-----i~-----------------------~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 223 N-----IS-----------------------NGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp H-----HH-----------------------HTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred H-----HH-----------------------cCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 1 10 0111122356778999999999999999999999986
No 28
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2e-49 Score=429.98 Aligned_cols=280 Identities=23% Similarity=0.285 Sum_probs=204.7
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceEE
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKAL 742 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 742 (988)
++|.+.++||+|+||+||+|++ +|+.||||+++.... ....+..|+..+.+++|||||+++++|... .......++
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~-~~~~~~~~l 78 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKD-NGTWTQLWL 78 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEE-CSSSEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCceEEEE
Confidence 4577889999999999999998 689999999964322 222344566667788999999999998754 112236799
Q ss_pred EEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC-----CCCeEeccCCCCCeeeCCCCc
Q 001974 743 VYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC-----QEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 743 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlkp~NIll~~~~~ 817 (988)
|||||++|+|.++++.. ++++.++.+|+.|++.||+|||+++ .++||||||||+|||++++++
T Consensus 79 V~Ey~~~gsL~~~l~~~------------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~ 146 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNRY------------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGT 146 (303)
T ss_dssp EEECCTTCBHHHHHHHC------------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred EecCCCCCcHHHHHHhC------------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCC
Confidence 99999999999999643 5899999999999999999999752 458999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCC------CCCCccchHHHHHHHHHHHhCCCCCCccccCCc
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS------EVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL 891 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 891 (988)
+||+|||+|+.................||+.|||||++.+. .++.++|||||||++|||+||++||........
T Consensus 147 ~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~ 226 (303)
T 3hmm_A 147 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL 226 (303)
T ss_dssp EEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCC
T ss_pred EEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccc
Confidence 99999999987655443322233345799999999998764 467899999999999999999988754322211
Q ss_pred chHHHH-----HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 892 NLHNYA-----RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 892 ~~~~~~-----~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.+.... ...+.. .+.+..+.+..++ .....+++..+.+|+.+||+.||++||||+||++
T Consensus 227 p~~~~~~~~~~~~~~~~---~~~~~~~rp~~p~-------------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~ 290 (303)
T 3hmm_A 227 PYYDLVPSDPSVEEMRK---VVCEQKLRPNIPN-------------RWQSCEALRVMAKIMRECWYANGAARLTALRIKK 290 (303)
T ss_dssp TTTTTSCSSCCHHHHHH---HHTTSCCCCCCCG-------------GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred cchhcccccchHHHHHH---HHhcccCCCCCCc-------------cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence 110000 000000 0011111111100 0112246678999999999999999999999999
Q ss_pred HHHHHHHH
Q 001974 967 ELQSVKNA 974 (988)
Q Consensus 967 ~L~~i~~~ 974 (988)
.|+++.++
T Consensus 291 ~L~~l~~~ 298 (303)
T 3hmm_A 291 TLSQLSQQ 298 (303)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-48 Score=471.40 Aligned_cols=541 Identities=20% Similarity=0.167 Sum_probs=439.6
Q ss_pred CCccccCCCCCCCCCceeeeeEEeCC---------CCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcc
Q 001974 5 DPQGILNSWNDSGHFCEWKGITCGLR---------HRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPRE 75 (988)
Q Consensus 5 ~~~~~~~~w~~~~~~c~~~~v~c~~~---------~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 75 (988)
..+.+-.+|.+-.+.+....|.|... +..++.|||++|+|+.+.+.+|..+++|++|||++|+|+++.|++
T Consensus 16 ~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~ 95 (635)
T 4g8a_A 16 ANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 95 (635)
T ss_dssp ---------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH
Confidence 33445567742111112245788742 357999999999999888889999999999999999999888999
Q ss_pred cCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccC-CCCCcccCCCcc
Q 001974 76 FGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTG-GIPPFIGNLTSL 154 (988)
Q Consensus 76 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 154 (988)
|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|.+++ ..|..++.+++|
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 9999999999999999997777889999999999999999998888899999999999999999985 357888999999
Q ss_pred ceeeccccccCCCCCccccCccccc----ccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcce
Q 001974 155 ESISLAANAFGGNIPNSLGQLKELK----SLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLF 230 (988)
Q Consensus 155 ~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L 230 (988)
++|+|++|++++..+..|..+.+++ .++++.|.++.+.+..+ ....++.+++.+|.....++...+.++..++..
T Consensus 176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 9999999999988888888877665 57899999996555544 445678899999877655555666677777777
Q ss_pred ecccccc------ccccCcccccCCcccEEEeccccccC---cccccccCCccccEEecccccCCCCCCCchhhhccccc
Q 001974 231 QVHHNFF------SGSIPISLSNASKLEFIEALDNSFSG---KLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLAN 301 (988)
Q Consensus 231 ~L~~N~l------~~~~p~~l~~l~~L~~L~l~~N~i~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 301 (988)
.+..+.. .......+.....+...++..+.... .....+..+.+++.+.+..|.+..+. .+..
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--------~~~~ 326 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--------DFSY 326 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--------GGGS
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--------cccc
Confidence 6654433 33344556666777777776655433 23345677888999999998876543 3456
Q ss_pred CCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCC--CccCcccCCCCccC
Q 001974 302 CSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFT--GTIPKEMGKLQNLE 379 (988)
Q Consensus 302 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~ 379 (988)
...|+.|++++|.+.+..+..+ ..|+.++++.|.+... .....+++|+.|++++|.+. +..+..+..+.+|+
T Consensus 327 ~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 400 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400 (635)
T ss_dssp CCCCSEEEEESCEESSCCCCBC----TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred chhhhhhhcccccccCcCcccc----hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhh
Confidence 6789999999999985444322 3689999999998743 33567899999999999996 34566777889999
Q ss_pred eEecccccCCCCCCCCCCCCCCCCEEEccccccccccc-cccccccccceeecCCCCCCccCchhhhhhcccccceeccc
Q 001974 380 GMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIP-SCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLAR 458 (988)
Q Consensus 380 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~ 458 (988)
.|+++.|.+. ..+..+..+++|+.+++++|.+....+ ..|..+++++.++++.|.+.+..|..+..++.+ +.|++++
T Consensus 401 ~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~ 478 (635)
T 4g8a_A 401 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAG 478 (635)
T ss_dssp EEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTT
T ss_pred hhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh-hhhhhhh
Confidence 9999999988 466778999999999999888765544 568899999999999999998778888888888 9999999
Q ss_pred cccc-CCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcC
Q 001974 459 NHLV-GSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLI 537 (988)
Q Consensus 459 N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 537 (988)
|.+. +..|..|..+++|++|||++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|||++|+|++.+
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred cccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence 9854 457889999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred ccc-ccC-CCCcEEeCCCCcCcccCCC
Q 001974 538 PKF-LED-LSLEYLNLSFNDLEGEVPT 562 (988)
Q Consensus 538 p~~-~~~-~~L~~l~l~~N~l~~~~p~ 562 (988)
|.. ..+ .+|++|+|++|++++....
T Consensus 559 ~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 559 KQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp SSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 987 455 4799999999999987653
No 30
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=3.4e-49 Score=439.68 Aligned_cols=251 Identities=23% Similarity=0.317 Sum_probs=209.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.+.|+..++||+|+||+||+|+++.+|+.||||++........+.+.+|+.+|++++|||||++++++. +++..|
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~ 224 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELW 224 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEE-----ECCEEE
Confidence 356999999999999999999999999999999998766666778999999999999999999999954 458899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEe
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVG 821 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 821 (988)
||||||+||+|.+++.. .++++.++..|+.||+.||+|||++ +||||||||+|||++.+|.+||+
T Consensus 225 iVmEy~~gG~L~~~i~~------------~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~ 289 (423)
T 4fie_A 225 VVMEFLEGGALTDIVTH------------TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLS 289 (423)
T ss_dssp EEEECCTTEEHHHHHHH------------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEEC
T ss_pred EEEeCCCCCcHHHHHhc------------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEe
Confidence 99999999999999853 2589999999999999999999999 99999999999999999999999
Q ss_pred eecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHH
Q 001974 822 DFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTAL 901 (988)
Q Consensus 822 DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 901 (988)
|||+|+........ ....+||+.|||||++.+..|+.++||||+||++|||++|+.||... ......
T Consensus 290 DFGla~~~~~~~~~----~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~---- 356 (423)
T 4fie_A 290 DFGFCAQVSKEVPR----RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPLKAM---- 356 (423)
T ss_dssp CCTTCEECCSSCCC----BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHH----
T ss_pred cCccceECCCCCcc----ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHH----
Confidence 99999876543221 23457999999999999999999999999999999999999998632 111111
Q ss_pred hhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 902 LDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 902 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
..+.....+. ......+++++.+|+.+||+.||++|||++|+++
T Consensus 357 -~~i~~~~~~~--------------------~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 357 -KMIRDNLPPR--------------------LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -HHHHHSCCCC--------------------CSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -HHHHcCCCCC--------------------CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111100000 1112356788999999999999999999999876
No 31
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.8e-49 Score=436.24 Aligned_cols=279 Identities=22% Similarity=0.317 Sum_probs=218.6
Q ss_pred HHHHHhhCCCCCCceeccccceeEEEEEECCC-----CeEEEEEEeecccc-chhHHHHHHHHHHHhcCC-CCceEEEee
Q 001974 656 ESLFKATDGFSSTHLIGMGSFGSVYKGAFDQD-----GTIVAIKVFNLQRH-GASKSFLAECKALKNIRH-RNLVKVITS 728 (988)
Q Consensus 656 ~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h-~niv~~~~~ 728 (988)
+.++...++|++.+.||+|+||+||+|++... ++.||||+++.... ...+.+.+|+++|++++| ||||+++|+
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~ 136 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 136 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence 44556678899999999999999999998543 36899999975433 334679999999999965 899999999
Q ss_pred cccccccCCCceEEEEeeccccchhhhcCCCCCCC-----chhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEec
Q 001974 729 CSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQ-----KDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHC 803 (988)
Q Consensus 729 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~-----~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~ 803 (988)
|.. .++..++|||||++|+|.++++...... .........+++.++..|+.|||+||+|||++ +||||
T Consensus 137 ~~~----~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHR 209 (353)
T 4ase_A 137 CTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR 209 (353)
T ss_dssp ECC----TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred EEe----cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecC
Confidence 753 2467899999999999999997542110 00001124689999999999999999999999 99999
Q ss_pred cCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCC
Q 001974 804 DLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKP 882 (988)
Q Consensus 804 Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p 882 (988)
||||+|||+++++.+||+|||+|+........ .......||+.|||||++.+..|+.++|||||||++|||+| |+.|
T Consensus 210 DLK~~NILl~~~~~vKi~DFGlar~~~~~~~~--~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~P 287 (353)
T 4ase_A 210 DLAARNILLSEKNVVKICDFGLARDIYKDPDY--VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 287 (353)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTS--EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred ccCccceeeCCCCCEEECcchhhhhcccCCCc--eeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCC
Confidence 99999999999999999999999866543322 12234568999999999999999999999999999999998 9999
Q ss_pred CCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHH
Q 001974 883 TDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSIT 962 (988)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ 962 (988)
|......+ .....+.+ ......+..+++++.++|.+||+.||++||||+
T Consensus 288 f~~~~~~~-----~~~~~i~~--------------------------g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~ 336 (353)
T 4ase_A 288 YPGVKIDE-----EFCRRLKE--------------------------GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS 336 (353)
T ss_dssp STTCCCSH-----HHHHHHHH--------------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred CCCCCHHH-----HHHHHHHc--------------------------CCCCCCCccCCHHHHHHHHHHcCcChhHCcCHH
Confidence 87432110 11110000 011122346788999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001974 963 NVVHELQSVKNA 974 (988)
Q Consensus 963 evl~~L~~i~~~ 974 (988)
||++.|+++.++
T Consensus 337 eil~~L~~llq~ 348 (353)
T 4ase_A 337 ELVEHLGNLLQA 348 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 32
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=5.8e-49 Score=419.20 Aligned_cols=249 Identities=26% Similarity=0.386 Sum_probs=198.9
Q ss_pred CCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceEEE
Q 001974 666 SSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKALV 743 (988)
Q Consensus 666 ~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv 743 (988)
+..++||+|+||+||+|++..+++.||+|++.... ....+.+.+|++++++++|||||++++++... ...++..++|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence 56678999999999999999999999999996442 23346799999999999999999999987543 2334668999
Q ss_pred EeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC--eEeccCCCCCeeeCC-CCcEEE
Q 001974 744 YEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP--VLHCDLKPGNVLLDN-DMIAHV 820 (988)
Q Consensus 744 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~-~~~~kL 820 (988)
||||++|+|.+++... ..+++..+..|+.||+.||+|||++ + ||||||||+|||++. ++.+||
T Consensus 108 mEy~~gg~L~~~l~~~-----------~~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl 173 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRF-----------KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKI 173 (290)
T ss_dssp EECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEE
T ss_pred EeCCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEE
Confidence 9999999999999643 3689999999999999999999998 6 999999999999984 799999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTA 900 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 900 (988)
+|||+|+...... ....+||+.|||||++.+ .|+.++|||||||++|||+||+.||.... .......
T Consensus 174 ~DFGla~~~~~~~------~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~----~~~~~~~-- 240 (290)
T 3fpq_A 174 GDLGLATLKRASF------AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ----NAAQIYR-- 240 (290)
T ss_dssp CCTTGGGGCCTTS------BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS----SHHHHHH--
T ss_pred EeCcCCEeCCCCc------cCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCC----cHHHHHH--
Confidence 9999998543321 223579999999999865 69999999999999999999999986321 1111111
Q ss_pred HhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 901 LLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 901 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.+.....+ ...+..+++++.+|+.+||+.||++|||++|+++
T Consensus 241 ---~i~~~~~~---------------------~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 241 ---RVTSGVKP---------------------ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp ---HHTTTCCC---------------------GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ---HHHcCCCC---------------------CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 11110000 0011245677999999999999999999999875
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.3e-48 Score=472.24 Aligned_cols=463 Identities=19% Similarity=0.254 Sum_probs=339.5
Q ss_pred CCCCEEEcCCCcccccCCcccCCCCCCcEEEC-CCCCCCCcCCcccccC----CCC--ceeec----------Cccccc-
Q 001974 56 SFLREINLMNNSIQGEIPREFGRLFRLEALFL-SDNDLVGEIPANLSYC----SRL--TILFL----------GRNKLM- 117 (988)
Q Consensus 56 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~l----~~L--~~L~L----------~~N~i~- 117 (988)
..++.|+|++|+|+|.+|.+|+.|++|++|+| ++|.+.|..|-..... ..+ +.+.. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46789999999999999999999999999999 9998887644321111 000 00000 000000
Q ss_pred ----------CCCcccccCccccccccccc--ccccCCCCCcccCCCccceeeccccccCC-----------------CC
Q 001974 118 ----------GSIPFEFFSLYKLKQLAMQR--NNLTGGIPPFIGNLTSLESISLAANAFGG-----------------NI 168 (988)
Q Consensus 118 ----------~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~~ 168 (988)
...+........++.+.+.. |++++ +|..|+++++|++|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01111123344566666665 99997 89999999999999999999997 38
Q ss_pred Ccccc--CcccccccccccccccCccchhhccccCccEEEeccCC-CCC-CCCCccc------ccCCCCcceeccccccc
Q 001974 169 PNSLG--QLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQ-FHG-SLPPSLG------LTLPHLRLFQVHHNFFS 238 (988)
Q Consensus 169 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~-i~~-~lp~~~~------~~l~~L~~L~L~~N~l~ 238 (988)
|..++ ++++|++|+|++|++.+.+|..|.++++|+.|+|++|+ +++ .+|..+. ..+++|+.|+|++|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88887 99999999999999999999999999999999999998 887 6887553 34569999999999999
Q ss_pred cccCc--ccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCC-CcEEEeecccC
Q 001974 239 GSIPI--SLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSN-LRTLIFAANKL 315 (988)
Q Consensus 239 ~~~p~--~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~-L~~L~Ls~N~l 315 (988)
.+|. .+.++++|+.|++++|+++ .+| .|..+++|+.|+|++|.++.++. .+..+++ |++|+|++|++
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~-------~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE-------DFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCT-------TSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchH-------HHhhccccCCEEECcCCCC
Confidence 7888 8999999999999999999 666 89999999999999999985443 4778888 99999999999
Q ss_pred CCCCCchhhhcc-ccccEEEccCCccccCCCccc---c--CCCcceEEEeeCccCCCccCccc-CCCCccCeEecccccC
Q 001974 316 RGALPHSIANLS-DQLQNLIMTSNQLHGSIPSGI---G--NLVGLYRLGMGGNQFTGTIPKEM-GKLQNLEGMGLYDNQL 388 (988)
Q Consensus 316 ~~~~p~~~~~~~-~~L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l 388 (988)
+ .+|..+.... .+|+.|+|++|++.+.+|... . .+++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|+|
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 9 7887766553 248888888888887665322 2 3347888888888888 555543 4778888888888888
Q ss_pred CCCCCCCCCCC--------CCCCEEEccccccccccccccc--cccccceeecCCCCCCccCchhhhhhcccccceeccc
Q 001974 389 SGEIPSSLGNL--------SILSELLLNNNSLSGVIPSCLG--SLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLAR 458 (988)
Q Consensus 389 ~~~~p~~~~~l--------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~ 458 (988)
+ .+|..+... ++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|..+++++.| +.|+|++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~ 785 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRH 785 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEECCC
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEECCC
Confidence 7 555543322 26666666666666 4555554 66666666666666663 56666666655 5666666
Q ss_pred ccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCc
Q 001974 459 NHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIP 538 (988)
Q Consensus 459 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 538 (988)
|+ ++++|++.+.+|..|+.+++|+.|+|++|+| +.+|..+. ++|+.|||++|++....+
T Consensus 786 N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 786 QR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 54 5566777778888888888888888888888 57777765 577777888777765554
Q ss_pred cc-ccCCCCcEEeCCCCcC
Q 001974 539 KF-LEDLSLEYLNLSFNDL 556 (988)
Q Consensus 539 ~~-~~~~~L~~l~l~~N~l 556 (988)
.. .....+..+.|++|++
T Consensus 845 ~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp GGGHHHHHTTCCEEECCTT
T ss_pred HHccccccchheeecCCCc
Confidence 33 2222344444555543
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-48 Score=465.48 Aligned_cols=469 Identities=20% Similarity=0.264 Sum_probs=294.4
Q ss_pred CCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccccccc
Q 001974 56 SFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAM 135 (988)
Q Consensus 56 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 135 (988)
.+++.|+|++|+++|.+|.+|+.|++|++|+|++|.+. ..+..++... +...+|... +..|+ +++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~-~~~~~~~~~~-----------~~~~~~~~~--~~~l~-l~l 145 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKG-----------ISANMSDEQ--KQKMR-MHY 145 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGG-GTCCSBSTTS-----------BCTTCCHHH--HHHHH-THH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccc-cCCccccccc-----------cccCchHHH--HHHHH-hhH
Confidence 35788999999999999999999999999999999763 2222221100 001223222 44555 666
Q ss_pred ccccccCCCCCcccC-CCccceeeccccccCCCCCccccCcccccccccc--cccccCccchhhccccCccEEEeccCCC
Q 001974 136 QRNNLTGGIPPFIGN-LTSLESISLAANAFGGNIPNSLGQLKELKSLGLG--ANNLSGIIPPSIYNLSLLANFSVPRNQF 212 (988)
Q Consensus 136 ~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~--~N~l~~~~~~~l~~l~~L~~L~L~~N~i 212 (988)
++|.+.+.+|..+.. +..+..+++....+.. .....++.+.+. .|++++ +|.++.++++|++|+|++|++
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l 218 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC
T ss_pred HHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc
Confidence 666665555544442 2233333433332221 112233333333 467776 677777777777777777777
Q ss_pred CCC-----------------CCCccc-ccCCCCcceeccccccccccCcccccCCcccEEEecccc-ccC-cccccccCC
Q 001974 213 HGS-----------------LPPSLG-LTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNS-FSG-KLSVNFGGM 272 (988)
Q Consensus 213 ~~~-----------------lp~~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~-i~~-~~~~~~~~l 272 (988)
++. +|..+. ..+++|++|+|++|++.+.+|..+.++++|++|++++|+ +++ .+|..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 642 443332 134444444444444444444444444444444444444 444 344333332
Q ss_pred ccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCc--hhhhccccccEEEccCCccccCCCccccC
Q 001974 273 KNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPH--SIANLSDQLQNLIMTSNQLHGSIPSGIGN 350 (988)
Q Consensus 273 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 350 (988)
..+..+++|++|++++|+++ .+|. .+..+. +|+.|++++|+++|.+| .+..
T Consensus 299 ------------------------~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 299 ------------------------ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp ------------------------HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEE
T ss_pred ------------------------hccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCC
Confidence 01122355555555555555 5555 555543 56666666666666666 6666
Q ss_pred CCcceEEEeeCccCCCccCcccCCCCc-cCeEecccccCCCCCCCCCCCCC--CCCEEEccccccccccccccc------
Q 001974 351 LVGLYRLGMGGNQFTGTIPKEMGKLQN-LEGMGLYDNQLSGEIPSSLGNLS--ILSELLLNNNSLSGVIPSCLG------ 421 (988)
Q Consensus 351 l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~------ 421 (988)
+++|+.|+|++|+++ .+|..+.++++ |+.|+|++|+++ .+|..+..++ +|+.|++++|++++..|..|.
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 666777777777666 66666666666 777777777766 5666665544 677777777777766666666
Q ss_pred -cccccceeecCCCCCCccCchhhhh-hcccccceecccccccCCCcccccc--------ccccceeecCCcccccccCc
Q 001974 422 -SLKQLAILHLFENGLNGTIPEEIFN-LTYLSNSLNLARNHLVGSIPTKIGN--------LKYLRVFNVSSNNLSGEIPS 491 (988)
Q Consensus 422 -~l~~L~~L~l~~N~l~~~~p~~~~~-l~~l~~~L~ls~N~l~~~~p~~~~~--------l~~L~~L~ls~N~l~~~~p~ 491 (988)
.+++|+.|+|++|+++ .+|..++. ++.| +.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|.
T Consensus 430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 430 FKGINVSSINLSNNQIS-KFPKELFSTGSPL-SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CCCCCEEEEECCSSCCC-SCCTHHHHTTCCC-SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred ccCCCCCEEECcCCccC-cCCHHHHccCCCC-CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 6667777777777776 56665543 5666 67777777776 44443322 237888888888888 6887
Q ss_pred ccc--cCCCCcEEEecCccccccCCccccCccccCeeec------CCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCC
Q 001974 492 QLG--LCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDL------SRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPT 562 (988)
Q Consensus 492 ~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~ 562 (988)
.+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|.. ..+++|++|+|++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 776 88888888888888886 8888888888888888 678899988875 7888999999999999 77776
Q ss_pred CcccCcccccccccccccCC
Q 001974 563 KGVFANISRISVAGFNRLCG 582 (988)
Q Consensus 563 ~~~~~~~~~~~~~~n~~lcg 582 (988)
. ....+..+.+.+|+..|-
T Consensus 584 ~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 584 K-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp C-CCTTCCEEECCSCTTCEE
T ss_pred h-HhCcCCEEECcCCCCccc
Confidence 5 336788888888887764
No 35
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=5.7e-49 Score=421.12 Aligned_cols=244 Identities=23% Similarity=0.296 Sum_probs=193.1
Q ss_pred hCCCCCCceeccccceeEEEEEEC---CCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFD---QDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
.++|++.+.||+|+||+||+|++. .+++.||+|+++... ......+.+|++++++++|||||++++++. +
T Consensus 23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~-----~ 97 (304)
T 3ubd_A 23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQ-----T 97 (304)
T ss_dssp GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEE-----E
T ss_pred ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEE-----E
Confidence 357999999999999999999873 467899999996432 223357889999999999999999999954 4
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
++..|+|||||+||+|.+++... ..+++.++..++.||+.||+|||++ +||||||||+|||+++++
T Consensus 98 ~~~~~ivmEy~~gg~L~~~l~~~-----------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g 163 (304)
T 3ubd_A 98 EGKLYLILDFLRGGDLFTRLSKE-----------VMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEG 163 (304)
T ss_dssp TTEEEEEECCCTTCEEHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTS
T ss_pred CCEEEEEEEcCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCC
Confidence 58899999999999999999653 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+|+....... ......||+.|||||++.+..|+.++||||+||++|||+||+.||... +....
T Consensus 164 ~vKl~DFGla~~~~~~~~----~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~ 234 (304)
T 3ubd_A 164 HIKLTDFGLSKESIDHEK----KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK-----DRKET 234 (304)
T ss_dssp CEEEESSEEEEC-----C----CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHH
T ss_pred CEEecccccceeccCCCc----cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc-----CHHHH
Confidence 999999999986543221 122356999999999999999999999999999999999999998632 11111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSI 961 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 961 (988)
... + .......+..+++++.+++.+||+.||++|||+
T Consensus 235 ~~~-----i-----------------------~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 235 MTM-----I-----------------------LKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp HHH-----H-----------------------HHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred HHH-----H-----------------------HcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 111 0 001112233567889999999999999999985
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-46 Score=449.45 Aligned_cols=462 Identities=19% Similarity=0.172 Sum_probs=328.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcc
Q 001974 35 TVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRN 114 (988)
Q Consensus 35 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 114 (988)
+.+|+++++++. +|..+. ++|++|+|++|+|++..|.+|.++++|++|+|++|+|++..|.+|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 788999999994 776664 78999999999999888889999999999999999999888899999999999999999
Q ss_pred cccCCCcccccCcccccccccccccccCC-CCCcccCCCccceeeccccccCCCCCccccCcccc--cccccccccc--c
Q 001974 115 KLMGSIPFEFFSLYKLKQLAMQRNNLTGG-IPPFIGNLTSLESISLAANAFGGNIPNSLGQLKEL--KSLGLGANNL--S 189 (988)
Q Consensus 115 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~ 189 (988)
+|+ .+|.. .+++|++|+|++|++++. +|..|+++++|++|++++|+++.. .|..+++| ++|+|++|++ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 55555 789999999999999863 457889999999999999988753 45555555 8899999888 7
Q ss_pred Cccchhhcccc--CccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccc
Q 001974 190 GIIPPSIYNLS--LLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSV 267 (988)
Q Consensus 190 ~~~~~~l~~l~--~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~ 267 (988)
+..|..+..++ .+ .++++.|.+.+.++...+..+++|+.|++++|+.... .+.+. ..
T Consensus 185 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~~~-~~ 243 (562)
T 3a79_B 185 GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLMTF-LS 243 (562)
T ss_dssp SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHHHH-HH
T ss_pred ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHHHH-HH
Confidence 77777777654 23 4566777776555555554555555555555431100 01101 11
Q ss_pred cccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCcc
Q 001974 268 NFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSG 347 (988)
Q Consensus 268 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~ 347 (988)
.|.++++|+.|+++++.+...... ..+ .....+ +|++|++++|++++.+|..
T Consensus 244 ~l~~l~~L~~L~L~~~~l~~~~~~--~~~-~~~~~~-------------------------~L~~L~l~~n~l~~~ip~~ 295 (562)
T 3a79_B 244 ELTRGPTLLNVTLQHIETTWKCSV--KLF-QFFWPR-------------------------PVEYLNIYNLTITERIDRE 295 (562)
T ss_dssp HHHSCSSCEEEEEEEEEECHHHHH--HHH-HHHTTS-------------------------SEEEEEEEEEEECSCCCCC
T ss_pred HHhccCcceEEEecCCcCcHHHHH--HHH-Hhhhcc-------------------------cccEEEEeccEeeccccch
Confidence 233444444444444433211000 000 001112 4555555555555555555
Q ss_pred c-----cCCCcceEEEeeCccCCCccC-cccCCC---CccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccccccc
Q 001974 348 I-----GNLVGLYRLGMGGNQFTGTIP-KEMGKL---QNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPS 418 (988)
Q Consensus 348 ~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 418 (988)
+ ..++.|+.++++.|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|++++..|.
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~ 371 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ 371 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred hhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh
Confidence 5 5666677777777766 334 222222 56788888888775321 125677888888888888877788
Q ss_pred ccccccccceeecCCCCCCc--cCchhhhhhcccccceecccccccCCCcc-ccccccccceeecCCcccccccCccccc
Q 001974 419 CLGSLKQLAILHLFENGLNG--TIPEEIFNLTYLSNSLNLARNHLVGSIPT-KIGNLKYLRVFNVSSNNLSGEIPSQLGL 495 (988)
Q Consensus 419 ~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~l~~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~ 495 (988)
.+..+++|+.|++++|++++ .+|..+.+++.| ++|++++|++++.+|. .+..+++|+.|+|++|++++.+|..+.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~- 449 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP- 449 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-
Confidence 88888888888888888874 334566777777 7888888888874554 477788899999999999887777655
Q ss_pred CCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcc-cccCCCCcEEeCCCCcCcccCCC
Q 001974 496 CSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPK-FLEDLSLEYLNLSFNDLEGEVPT 562 (988)
Q Consensus 496 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~L~~l~l~~N~l~~~~p~ 562 (988)
++|+.|+|++|+|+ .+|..+..+++|+.|||++|+|++.++. +..+++|++|+|++|++++.+|.
T Consensus 450 -~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 450 -PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 68999999999988 7888777899999999999999977776 56777899999999999887764
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-47 Score=450.26 Aligned_cols=465 Identities=18% Similarity=0.201 Sum_probs=360.2
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccc
Q 001974 59 REINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRN 138 (988)
Q Consensus 59 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 138 (988)
++||+++|+|+ .+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|+|++..|.+|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 5776665 88999999999998777788888999999999999988777888888888888888888
Q ss_pred cccCCCCCcccCCCccceeeccccccCC-CCCccccCcccccccccccccccCccchhhccccCc--cEEEeccCCCCCC
Q 001974 139 NLTGGIPPFIGNLTSLESISLAANAFGG-NIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLL--ANFSVPRNQFHGS 215 (988)
Q Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~L~~N~i~~~ 215 (988)
+++ .+|.. .+++|++|+|++|++++ ..|..|+++++|++|+|++|++++ ..+..+++| ++|++++|++.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence 888 45655 78888888888888876 357788888888888888888774 345556655 666666666610
Q ss_pred CCCcccccCCCCcceeccccccccccCcccccCC-cccEEEeccccccCccc-ccccCCccccEEecccccCCCCCCCch
Q 001974 216 LPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNAS-KLEFIEALDNSFSGKLS-VNFGGMKNLSYFNVAYNNLGSGESDEM 293 (988)
Q Consensus 216 lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~l~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 293 (988)
.+..|..+..+. +...+++++|.+.+..+ ..+..+++|+.|++++|..........
T Consensus 153 ----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 153 ----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp ----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 233344444443 34456788888766444 457778888888888886211111111
Q ss_pred hhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCccc-
Q 001974 294 SFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEM- 372 (988)
Q Consensus 294 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~- 372 (988)
.....+..+++|++|++++|.+++..+..+ . ..+ ..++|+.|++++|++++.+|..+
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--------------------~-~~~-~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRI--------------------L-QLV-WHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHH--------------------H-HHH-HTSSCSEEEEEEEEEESCCCCCCC
T ss_pred cchhhhccccchhhccccccccCHHHHHHH--------------------H-HHh-hhCcccEEEeecccccCccccchh
Confidence 222356667777777777766652111111 1 111 23589999999999999999998
Q ss_pred ----CCCCccCeEecccccCCCCCC-CCCCCC---CCCCEEEccccccccccccccccccccceeecCCCCCCccCchhh
Q 001974 373 ----GKLQNLEGMGLYDNQLSGEIP-SSLGNL---SILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEI 444 (988)
Q Consensus 373 ----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 444 (988)
.++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|++.... .+..+++|+.|++++|++++.+|..+
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 9999999999999999 455 445444 67999999999987432 23788999999999999998899999
Q ss_pred hhhcccccceecccccccC--CCccccccccccceeecCCcccccccCcc-cccCCCCcEEEecCccccccCCccccCcc
Q 001974 445 FNLTYLSNSLNLARNHLVG--SIPTKIGNLKYLRVFNVSSNNLSGEIPSQ-LGLCSYLEEIYMRGNFFHGSIPSSLSSLR 521 (988)
Q Consensus 445 ~~l~~l~~~L~ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 521 (988)
..++.| ++|++++|++++ .+|..++.+++|++|||++|++++.+|.. +..+++|+.|+|++|++++.+|..+. +
T Consensus 345 ~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 345 GHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred ccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 999999 999999999996 56788999999999999999999867764 88999999999999999988888775 7
Q ss_pred ccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcccCCC-CcccCcccccccccccccCCCC
Q 001974 522 AVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEGEVPT-KGVFANISRISVAGFNRLCGGI 584 (988)
Q Consensus 522 ~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lcg~~ 584 (988)
+|+.|||++|+|+..++....+++|++|+|++|++++.++. ...+..+..+.+.+|++.|.|.
T Consensus 422 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999999997666668888999999999999965544 3456677788899999988754
No 38
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2.6e-47 Score=410.88 Aligned_cols=259 Identities=23% Similarity=0.350 Sum_probs=190.7
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccc-------
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDF------- 734 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------- 734 (988)
++|++++.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|++++++++|||||++++++.....
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 358999999999999999999999999999999975443 344678999999999999999999998754321
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN 814 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 814 (988)
......|+|||||++|+|.+++...... ...++..++.|+.||+.||+|||++ +||||||||+|||++.
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~--------~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~ 153 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTI--------EERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTM 153 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSG--------GGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCC--------ChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECC
Confidence 1223579999999999999999765421 2456777899999999999999999 9999999999999999
Q ss_pred CCcEEEeeecccccccccccccc--------eeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCcc
Q 001974 815 DMIAHVGDFGLARVRQEVSNLTQ--------SCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVM 886 (988)
Q Consensus 815 ~~~~kL~DfG~a~~~~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~ 886 (988)
++.+||+|||+|+.......... ....+.+||+.|||||++.+..|+.++|||||||++|||++ ||...
T Consensus 154 ~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~ 230 (299)
T 4g31_A 154 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ 230 (299)
T ss_dssp TCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH
T ss_pred CCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc
Confidence 99999999999987654322111 11234579999999999999999999999999999999996 76421
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
. +... ....+.. ... +.. .....+...+++.+||+.||++|||++|+++
T Consensus 231 ~----~~~~-----~~~~~~~---~~~---p~~----------------~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 231 M----ERVR-----TLTDVRN---LKF---PPL----------------FTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp H----HHHH-----HHHHHHT---TCC---CHH----------------HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred c----HHHH-----HHHHHhc---CCC---CCC----------------CcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0 0000 0000100 000 000 1123445678999999999999999999986
No 39
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.8e-47 Score=422.07 Aligned_cols=277 Identities=22% Similarity=0.242 Sum_probs=206.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccc-cccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSI-DFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~~~ 738 (988)
.++|++++.||+|+||+||+|++..+|+.||||+++... ....+.+.+|+++|+.++|||||++++++... .+.+.+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 367999999999999999999999999999999996432 23346788999999999999999999987643 244567
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..|+||||| +|+|.+++.... ++++.++..|+.||+.||+|||++ +||||||||+|||++.++.+
T Consensus 133 ~~~ivmE~~-~g~L~~~i~~~~-----------~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~ 197 (398)
T 4b99_A 133 SVYVVLDLM-ESDLHQIIHSSQ-----------PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCEL 197 (398)
T ss_dssp CEEEEEECC-SEEHHHHHTSSS-----------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCE
T ss_pred EEEEEEeCC-CCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCE
Confidence 899999999 578999997653 699999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||+|+................+||+.|||||++.+. .++.++||||+||++|||++|++||..... ......+
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~--~~~l~~I 275 (398)
T 4b99_A 198 KIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNY--VHQLQLI 275 (398)
T ss_dssp EECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSH--HHHHHHH
T ss_pred EEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCH--HHHHHHH
Confidence 9999999987654333333334456799999999998875 568999999999999999999999863211 1111111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhh-----------hhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQA-----------KINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
....... ....|........... ........++++.+|+.+||+.||++|||++|+++
T Consensus 276 ~~~~g~p-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 276 MMVLGTP-----------SPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp HHHHCCC-----------CGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHhcCCC-----------ChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 1110000 0000000000000000 00011245678899999999999999999999876
No 40
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.4e-44 Score=400.50 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=169.6
Q ss_pred HhhCCCCCCceeccccceeEEEEEEC---CCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeeccccccc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFD---QDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~---~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~ 735 (988)
...++|++.+.||+|+||+||+|+++ .+++.||+|++.... ....+.+|+++++.+ +||||+++++++ .
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~-----~ 90 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCF-----R 90 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEE-----E
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEE-----E
Confidence 45678999999999999999999874 357899999986443 346788999999998 799999999985 4
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
++++.++||||+++|+|.+++. .+++.+++.++.||+.||+|||++ +||||||||+|||++.+
T Consensus 91 ~~~~~~lvmE~~~g~~L~~~~~--------------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~ 153 (361)
T 4f9c_A 91 KNDHVVIAMPYLEHESFLDILN--------------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRR 153 (361)
T ss_dssp ETTEEEEEEECCCCCCHHHHHT--------------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETT
T ss_pred ECCEEEEEEeCCCcccHHHHHc--------------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCC
Confidence 4588999999999999999983 478899999999999999999999 99999999999999876
Q ss_pred -CcEEEeeeccccccccccccc------------------------ceeccccccccccccCcccCCC-CCCCccchHHH
Q 001974 816 -MIAHVGDFGLARVRQEVSNLT------------------------QSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSY 869 (988)
Q Consensus 816 -~~~kL~DfG~a~~~~~~~~~~------------------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwsl 869 (988)
+.+||+|||+|+......... .......+||+.|||||++.+. .++.++||||+
T Consensus 154 ~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSl 233 (361)
T 4f9c_A 154 LKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSA 233 (361)
T ss_dssp TTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHH
T ss_pred CCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhh
Confidence 799999999998654322110 0112235699999999998875 48999999999
Q ss_pred HHHHHHHHhCCCCCCc
Q 001974 870 GILLLEMVTGKKPTDV 885 (988)
Q Consensus 870 G~vl~elltg~~p~~~ 885 (988)
||++|||+||+.||..
T Consensus 234 G~il~ell~G~~Pf~~ 249 (361)
T 4f9c_A 234 GVIFLSLLSGRYPFYK 249 (361)
T ss_dssp HHHHHHHHHTCSSSSC
T ss_pred HHHHHHHHHCCCCCCC
Confidence 9999999999999853
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-43 Score=422.54 Aligned_cols=465 Identities=18% Similarity=0.205 Sum_probs=348.5
Q ss_pred CCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccc
Q 001974 57 FLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQ 136 (988)
Q Consensus 57 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 136 (988)
..+++|+++|+++ .+|..+. ++|++|+|++|.|++..|..|+.+++|++|+|++|+|++..|.+|.++++|++|+|+
T Consensus 32 ~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4478899999888 4666553 788888888888887777788888888888888888887778888888888888888
Q ss_pred cccccCCCCCcccCCCccceeeccccccCCC-CCccccCcccccccccccccccCccchhhccccCc--cEEEeccCCCC
Q 001974 137 RNNLTGGIPPFIGNLTSLESISLAANAFGGN-IPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLL--ANFSVPRNQFH 213 (988)
Q Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~L~~N~i~ 213 (988)
+|+++ .+|.. .+++|++|+|++|++++. .|..|+++++|++|+|++|++++. .+..+++| ++|++++|++.
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 88887 45554 778888888888888753 356777777777777777777642 33334433 55555555551
Q ss_pred CCCCCcccccCCCCcceeccccccccccCcccccCC-cccEEEeccccccCccc-ccccCCccccEEecccccCCCCCCC
Q 001974 214 GSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNAS-KLEFIEALDNSFSGKLS-VNFGGMKNLSYFNVAYNNLGSGESD 291 (988)
Q Consensus 214 ~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~l~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~ 291 (988)
. ++..|..+..+. +.-.+++++|.+.+..+ ..+..+++|+.+++++|..... .
T Consensus 183 ~-----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~ 237 (562)
T 3a79_B 183 I-----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--R 237 (562)
T ss_dssp C-----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--H
T ss_pred c-----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc--h
Confidence 0 334444444443 12255888888876544 3566788888888888852100 0
Q ss_pred chhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcc
Q 001974 292 EMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKE 371 (988)
Q Consensus 292 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 371 (988)
.......+..+++|+.|+++++.+. +|.+.+ ++..+ ..++|++|++++|++++.+|..
T Consensus 238 l~~~~~~l~~l~~L~~L~L~~~~l~--------------------~~~~~~-~~~~~-~~~~L~~L~l~~n~l~~~ip~~ 295 (562)
T 3a79_B 238 LMTFLSELTRGPTLLNVTLQHIETT--------------------WKCSVK-LFQFF-WPRPVEYLNIYNLTITERIDRE 295 (562)
T ss_dssp HHHHHHHHHSCSSCEEEEEEEEEEC--------------------HHHHHH-HHHHH-TTSSEEEEEEEEEEECSCCCCC
T ss_pred HHHHHHHHhccCcceEEEecCCcCc--------------------HHHHHH-HHHhh-hcccccEEEEeccEeeccccch
Confidence 1122234566777777777666554 222221 11222 2358999999999999999988
Q ss_pred c-----CCCCccCeEecccccCCCCCC-CCCCC---CCCCCEEEccccccccccccccccccccceeecCCCCCCccCch
Q 001974 372 M-----GKLQNLEGMGLYDNQLSGEIP-SSLGN---LSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPE 442 (988)
Q Consensus 372 ~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 442 (988)
+ ..++.|+.++++.|.+ .+| ..+.. ..+|+.|++++|.+.... .+..+++|+.|++++|++++.+|.
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~ 371 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ 371 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred hhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh
Confidence 7 7888888888888887 344 22222 267999999999987432 237889999999999999988999
Q ss_pred hhhhhcccccceecccccccCC--CccccccccccceeecCCcccccccCc-ccccCCCCcEEEecCccccccCCccccC
Q 001974 443 EIFNLTYLSNSLNLARNHLVGS--IPTKIGNLKYLRVFNVSSNNLSGEIPS-QLGLCSYLEEIYMRGNFFHGSIPSSLSS 519 (988)
Q Consensus 443 ~~~~l~~l~~~L~ls~N~l~~~--~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 519 (988)
.+.+++.+ ++|++++|++++. +|..+..+++|+.|++++|++++.+|. .+..+++|++|+|++|++++.+|..+.
T Consensus 372 ~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~- 449 (562)
T 3a79_B 372 GCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP- 449 (562)
T ss_dssp TCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-
T ss_pred hhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-
Confidence 99999999 9999999999963 457799999999999999999985665 588999999999999999988887765
Q ss_pred ccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcccCCC-CcccCcccccccccccccCCCC
Q 001974 520 LRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEGEVPT-KGVFANISRISVAGFNRLCGGI 584 (988)
Q Consensus 520 l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lcg~~ 584 (988)
++|+.|||++|+|+.+++....+++|++|+|++|++++.++. ...+..+..+.+.+|++.|.|+
T Consensus 450 -~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 450 -PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp -TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred -CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 799999999999997777778888999999999999965554 4556677888899999998754
No 42
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=7.9e-44 Score=413.40 Aligned_cols=250 Identities=21% Similarity=0.279 Sum_probs=200.3
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHH---HHHHHHHhcCCCCceEEEeeccccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFL---AECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~---~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
.++|++.++||+|+||+||+|+++.+|+.||+|+++... ........ .++.+++.++|||||++++++ .
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f-----~ 262 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF-----H 262 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE-----E
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEE-----E
Confidence 367999999999999999999999999999999996432 12222333 346667778999999999994 5
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
+++..|+||||++||+|.+++... ..+++..++.|+.||+.||+|||++ +||||||||+|||++.+
T Consensus 263 ~~~~lylVmEy~~GGdL~~~l~~~-----------~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~ 328 (689)
T 3v5w_A 263 TPDKLSFILDLMNGGDLHYHLSQH-----------GVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEH 328 (689)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTT
T ss_pred ECCEEEEEEecCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCC
Confidence 568999999999999999999654 3699999999999999999999999 99999999999999999
Q ss_pred CcEEEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 816 MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 816 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
|.+||+|||+|+...... ....+||+.|||||++.. ..|+.++||||+||++|||++|++||......+ ..
T Consensus 329 G~vKL~DFGlA~~~~~~~------~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~--~~ 400 (689)
T 3v5w_A 329 GHVRISDLGLACDFSKKK------PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KH 400 (689)
T ss_dssp SCEEECCCTTCEECSSCC------CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC--HH
T ss_pred CCEEecccceeeecCCCC------CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH--HH
Confidence 999999999998764432 223579999999999975 579999999999999999999999996422111 11
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC-----HHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS-----ITNVVH 966 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 966 (988)
...... .......+..+++++.+|+.+||+.||++|++ ++||++
T Consensus 401 ~i~~~i----------------------------~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 401 EIDRMT----------------------------LTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp HHHHHH----------------------------HHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred HHHHhh----------------------------cCCCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 111100 01111223356788999999999999999998 677764
No 43
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.5e-43 Score=416.68 Aligned_cols=253 Identities=21% Similarity=0.295 Sum_probs=209.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|++.+.||+|+||+||+|+++.+|+.||+|++........+.+.+|+++|+.++||||+++++++ .+++..+
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~-----~~~~~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF-----EDDNEMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEE-----ECSSEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEE-----EECCEEE
Confidence 36899999999999999999999999999999999866655667899999999999999999999994 4568999
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC--CcEE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND--MIAH 819 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~--~~~k 819 (988)
+|||||+||+|.+++.... ..+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+|
T Consensus 231 iv~E~~~gg~L~~~i~~~~----------~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vK 297 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADEH----------NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELK 297 (573)
T ss_dssp EEEECCCCCBHHHHHTCTT----------SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEE
T ss_pred EEEeecCCCcHHHHHHHhC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEE
Confidence 9999999999999997543 3689999999999999999999999 99999999999999854 8999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||+|+......... ..+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......
T Consensus 298 l~DFG~a~~~~~~~~~~-----~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~-----~~~~~~ 367 (573)
T 3uto_A 298 LIDFGLTAHLDPKQSVK-----VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND-----DETLRN 367 (573)
T ss_dssp ECCCSSCEECCTTSEEE-----EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHH
T ss_pred EeeccceeEccCCCcee-----eeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHH
Confidence 99999999765533222 24699999999999999999999999999999999999999863211 111111
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+. ........ .....+++++.+|+.+||+.||++|||++|+++
T Consensus 368 -----i~---~~~~~~~~----------------~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 368 -----VK---SCDWNMDD----------------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp -----HH---TTCCCCCS----------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -----HH---hCCCCCCc----------------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 10 00000000 011246678899999999999999999999986
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-42 Score=399.59 Aligned_cols=402 Identities=22% Similarity=0.290 Sum_probs=229.7
Q ss_pred CCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceee
Q 001974 79 LFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESIS 158 (988)
Q Consensus 79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (988)
.++|++|++++|.+ +.+|.+|+++++|++|+|++|++.+.+|.+++++.+|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 35556666666665 35566666666666666666666656666666666665555554432 2455566
Q ss_pred ccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccc
Q 001974 159 LAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFS 238 (988)
Q Consensus 159 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~ 238 (988)
+++|.+++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++. .+|.. .++|++|++++|+++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCS
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCC
Confidence 66666553 2321 2456666666666664 3432 255666666666665 33321 146666666666666
Q ss_pred cccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCC
Q 001974 239 GSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGA 318 (988)
Q Consensus 239 ~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 318 (988)
+ +| .+.++++|++|++++|++++. |.. ..+|++|++++|.++.++ .+..+++|++|++++|++++
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSS-
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCc-
Confidence 4 44 466666777777777766653 222 247777777777776542 25667777777777777773
Q ss_pred CCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCC
Q 001974 319 LPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGN 398 (988)
Q Consensus 319 ~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 398 (988)
+|.. +++|++|++++|+++ .+|. +..+++|+.|++++|++++ +|.. +++|+.|++++|++++ +|..
T Consensus 210 l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 210 LPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp CCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---
T ss_pred CCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---
Confidence 4432 236888888888888 5663 7888888888888888884 5543 3688888888888885 5553
Q ss_pred CCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhh-cccccceecccccccCCCccccccccccce
Q 001974 399 LSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNL-TYLSNSLNLARNHLVGSIPTKIGNLKYLRV 477 (988)
Q Consensus 399 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~ 477 (988)
+++|+.|++++|++++. |.. .++|+.|++++|++++ ++. + +.+ ++|++++|++++ +|.. +++|+.
T Consensus 276 ~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~----~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~ 341 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCD----LPPSL-EELNVSNNKLIE-LPAL---PPRLER 341 (454)
T ss_dssp CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECC----CCTTC-CEEECCSSCCSC-CCCC---CTTCCE
T ss_pred cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccC----CcCcC-CEEECCCCcccc-cccc---CCcCCE
Confidence 37788888888888862 221 2578888888888873 432 2 245 788888888885 5654 477888
Q ss_pred eecCCcccccccCcccccCCCCcEEEecCccccc--cCCccccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCc
Q 001974 478 FNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHG--SIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFND 555 (988)
Q Consensus 478 L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~ 555 (988)
|++++|+++ .+|. .+++|+.|+|++|++++ .+|.++..+ +.|++.|.+|.. ..+|++|++++|+
T Consensus 342 L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~--~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 342 LIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL--PQNLKQLHVETNP 407 (454)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-----------------------
T ss_pred EECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc--cCcCCEEECCCCc
Confidence 888888888 5776 47888888898888887 677766543 346666666653 3467777777777
Q ss_pred Ccc--cCCC
Q 001974 556 LEG--EVPT 562 (988)
Q Consensus 556 l~~--~~p~ 562 (988)
++| .+|.
T Consensus 408 l~~~~~iP~ 416 (454)
T 1jl5_A 408 LREFPDIPE 416 (454)
T ss_dssp ---------
T ss_pred CCccccchh
Confidence 776 5553
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-42 Score=401.45 Aligned_cols=378 Identities=20% Similarity=0.234 Sum_probs=255.7
Q ss_pred CCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcC-CcccccCCCCceeecCcccccC
Q 001974 40 RSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEI-PANLSYCSRLTILFLGRNKLMG 118 (988)
Q Consensus 40 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~i~~ 118 (988)
.+++++ .+|. + .++|++|+|++|+|++..|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|++++
T Consensus 18 ~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 18 INRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp CSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 345555 4554 2 278899999999999888889999999999999999887544 6678999999999999999988
Q ss_pred CCcccccCcccccccccccccccCCCCC--cccCCCccceeeccccccCCCCCcc-ccCcccccccccccccccCccchh
Q 001974 119 SIPFEFFSLYKLKQLAMQRNNLTGGIPP--FIGNLTSLESISLAANAFGGNIPNS-LGQLKELKSLGLGANNLSGIIPPS 195 (988)
Q Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~ 195 (988)
..|..|.++++|++|+|++|++++..+. .|..+++|++|+|++|++++..|.. |.++++|++|+|++|++++..+..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 8888999999999999999998864443 4888999999999999998777776 788999999999999998888888
Q ss_pred hccc--cCccEEEeccCCCCCCCCCccc--------ccCCCCcceeccccccccccCcccccC---CcccEEEecccccc
Q 001974 196 IYNL--SLLANFSVPRNQFHGSLPPSLG--------LTLPHLRLFQVHHNFFSGSIPISLSNA---SKLEFIEALDNSFS 262 (988)
Q Consensus 196 l~~l--~~L~~L~L~~N~i~~~lp~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~l~~N~i~ 262 (988)
+..+ .+|+.|++++|.+. .++.... ..+++|+.|++++|++++..|..+... .+|+.|++++|.+.
T Consensus 174 l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhccccccccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 8776 67888888888887 3333221 133455555555555555444444332 44444444444433
Q ss_pred CcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCcccc
Q 001974 263 GKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHG 342 (988)
Q Consensus 263 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~ 342 (988)
+... ..+.+.......+. -...++|++|++++|++++..|..+..+. +|++|++++|++++
T Consensus 253 ~~~~--------------~~~~~~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 253 GSSF--------------GHTNFKDPDNFTFK----GLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINK 313 (455)
T ss_dssp SCCT--------------TCCSSCCCCTTTTG----GGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCE
T ss_pred cccc--------------chhhhccCcccccc----cccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccc
Confidence 2110 11111111111000 01235666666666666655555555543 56666666666666
Q ss_pred CCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccccccccccc
Q 001974 343 SIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGS 422 (988)
Q Consensus 343 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 422 (988)
..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 66666666666666666666666555666666666666666666666666666666666666666666666555555666
Q ss_pred ccccceeecCCCCCCccCc
Q 001974 423 LKQLAILHLFENGLNGTIP 441 (988)
Q Consensus 423 l~~L~~L~l~~N~l~~~~p 441 (988)
+++|+.|++++|++++..|
T Consensus 394 l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCBCCCTT
T ss_pred CCcccEEEccCCCcccCCC
Confidence 6666666666666665555
No 46
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=378.81 Aligned_cols=268 Identities=24% Similarity=0.387 Sum_probs=218.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|++.+.||+|+||+||+|++..+++.||+|++........+.+.+|++++++++||||+++++++.. ++..+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~ 83 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-----DKRLN 83 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-----CCeeE
Confidence 4678999999999999999999998999999999876666667889999999999999999999999653 47899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEe
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVG 821 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 821 (988)
+||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 84 lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~ 150 (310)
T 3s95_A 84 FITEYIKGGTLRGIIKSMD----------SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVA 150 (310)
T ss_dssp EEEECCTTCBHHHHHHHCC----------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEEC
T ss_pred EEEEecCCCcHHHHHHhcc----------CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEe
Confidence 9999999999999997543 3689999999999999999999999 99999999999999999999999
Q ss_pred eecccccccccccccc----------eeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCc
Q 001974 822 DFGLARVRQEVSNLTQ----------SCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL 891 (988)
Q Consensus 822 DfG~a~~~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 891 (988)
|||+++.......... .......||+.|+|||++.+..++.++||||||+++|||++|..||........
T Consensus 151 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~ 230 (310)
T 3s95_A 151 DFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTM 230 (310)
T ss_dssp CCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCT
T ss_pred ecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHH
Confidence 9999986544322111 011135699999999999999999999999999999999999999864332211
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSV 971 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 971 (988)
....... . ......+..+++++.+++.+||+.||++|||++|+++.|+++
T Consensus 231 ~~~~~~~--------~----------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l 280 (310)
T 3s95_A 231 DFGLNVR--------G----------------------FLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETL 280 (310)
T ss_dssp TSSBCHH--------H----------------------HHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHhhhhh--------c----------------------cccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1000000 0 000112345777899999999999999999999999999999
Q ss_pred HHHhhh
Q 001974 972 KNALLE 977 (988)
Q Consensus 972 ~~~~~~ 977 (988)
+..+..
T Consensus 281 ~~~~~~ 286 (310)
T 3s95_A 281 RMHLAG 286 (310)
T ss_dssp HHHHHH
T ss_pred HHhccC
Confidence 987665
No 47
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=6.9e-42 Score=377.70 Aligned_cols=286 Identities=31% Similarity=0.534 Sum_probs=226.9
Q ss_pred ccCHHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 001974 652 KVSYESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSS 731 (988)
Q Consensus 652 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 731 (988)
.+++.++...+++|+..+.||+|+||.||+|++. +++.||||++........+.+.+|++++++++||||+++++++.
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~- 105 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD- 105 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECC-
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEc-
Confidence 3445555667899999999999999999999975 78999999987766666788999999999999999999999964
Q ss_pred ccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCee
Q 001974 732 IDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVL 811 (988)
Q Consensus 732 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 811 (988)
.++..++||||+++|+|.+++....... ..+++.+++.++.|++.||+|||+. +|+||||||+||+
T Consensus 106 ----~~~~~~lv~e~~~~~~L~~~l~~~~~~~-------~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil 171 (321)
T 2qkw_B 106 ----ERNEMILIYKYMENGNLKRHLYGSDLPT-------MSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINIL 171 (321)
T ss_dssp ----CTTCCEEEEECCTTCBTGGGSSSSCCCS-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEE
T ss_pred ----CCCeEEEEEEcCCCCcHHHHHhccCCCc-------cccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEE
Confidence 4478899999999999999997654321 2589999999999999999999998 9999999999999
Q ss_pred eCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCC-
Q 001974 812 LDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGD- 890 (988)
Q Consensus 812 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~- 890 (988)
++.++.+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+
T Consensus 172 ~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~ 249 (321)
T 2qkw_B 172 LDENFVPKITDFGISKKGTELDQT--HLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREM 249 (321)
T ss_dssp ECTTCCEEECCCTTCEECSSSSCC--CCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSC
T ss_pred ECCCCCEEEeeccccccccccccc--ccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHH
Confidence 999999999999999864432211 11223458999999999988899999999999999999999999997544332
Q ss_pred cchHHHHHHHHhh-hhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHH
Q 001974 891 LNLHNYARTALLD-HVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQ 969 (988)
Q Consensus 891 ~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 969 (988)
.....+....... .+...+++.... ....+++.++.+++.+||+.||++|||++|+++.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~ 311 (321)
T 2qkw_B 250 VNLAEWAVESHNNGQLEQIVDPNLAD------------------KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLE 311 (321)
T ss_dssp CCHHHHTHHHHTTTCCCSSSSSSCTT------------------CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHhhhccccccHHHhcChhhcc------------------ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 2233332222111 122222222211 112356788999999999999999999999999999
Q ss_pred HHHH
Q 001974 970 SVKN 973 (988)
Q Consensus 970 ~i~~ 973 (988)
.+.+
T Consensus 312 ~~l~ 315 (321)
T 2qkw_B 312 YALR 315 (321)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9865
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.6e-42 Score=393.34 Aligned_cols=420 Identities=24% Similarity=0.235 Sum_probs=169.7
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecC
Q 001974 33 RVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLG 112 (988)
Q Consensus 33 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (988)
+++.|++++|++ +.+|++++.+++|++|+|++|++++.+|.+++.+.+|+.+++++|.. .+|++|+++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l~ 79 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELELN 79 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEECT
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEec
Confidence 444555555555 35555555555555555555555555555555554431000000000 012444444
Q ss_pred cccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCcc
Q 001974 113 RNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGII 192 (988)
Q Consensus 113 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 192 (988)
+|++++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++ ++.. .++|++|+|++|++++ +
T Consensus 80 ~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 80 NLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp TSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-C
T ss_pred CCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-C
Confidence 444442 2221 1344455555555443 3322 2445555555555442 1111 1345555555555553 3
Q ss_pred chhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCC
Q 001974 193 PPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGM 272 (988)
Q Consensus 193 ~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l 272 (988)
| ++.++++|++|++++|+++ .+|.. .++|++|++++|++++ +| .+.++++|+.|++++|++++... . .
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-~---~ 214 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-L---P 214 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-C---C
T ss_pred c-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-C---c
Confidence 3 3555555555555555554 34432 1355555555555554 23 35555555555555555554221 1 1
Q ss_pred ccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCC
Q 001974 273 KNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLV 352 (988)
Q Consensus 273 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 352 (988)
++|++|++++|.++.++ .+..+++|++|++++|++++ +|.. .++|+.|++++|++++ +|.. ++
T Consensus 215 ~~L~~L~l~~n~l~~lp--------~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP--------ELQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp TTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CcccEEECcCCcCCccc--------ccCCCCCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccc-cCcc---cC
Confidence 35555566655555332 13455556666666665552 3331 2356666666666663 3332 25
Q ss_pred cceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecC
Q 001974 353 GLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLF 432 (988)
Q Consensus 353 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 432 (988)
+|+.|++++|++++ +|.. .++|+.|++++|++++ ++.. .++|+.|++++|++++ +|.. +++|+.|+++
T Consensus 278 ~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 278 SLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp TCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 56666666666663 2211 1456666666666663 2211 1356666666666664 3433 3566666666
Q ss_pred CCCCCccCchhhhhhcccccceecccccccC--CCccccccccccceeecCCcccccccCcccccCCCCcEEEecCcccc
Q 001974 433 ENGLNGTIPEEIFNLTYLSNSLNLARNHLVG--SIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFH 510 (988)
Q Consensus 433 ~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 510 (988)
+|+++ .+|. .++.+ ++|++++|++++ .+|..+..+ +.|.+.|.+|.. +++|+.|++++|+++
T Consensus 346 ~N~l~-~lp~---~l~~L-~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 346 FNHLA-EVPE---LPQNL-KQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLR 409 (454)
T ss_dssp SSCCS-CCCC---CCTTC-CEEECCSSCCSSCCCCCTTCCEE--------ECCC--------------------------
T ss_pred CCccc-cccc---hhhhc-cEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCC
Confidence 66666 4555 24455 666666776665 455544432 335556666653 467788888888887
Q ss_pred c--cCCccccCccccCeeecCCCcccCcCccc
Q 001974 511 G--SIPSSLSSLRAVLAIDLSRNNLSGLIPKF 540 (988)
Q Consensus 511 ~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 540 (988)
+ .+|.+ |+.|.+++|.+.+.+|-.
T Consensus 410 ~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 410 EFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp --------------------------------
T ss_pred ccccchhh------HhheeCcCcccCCccccC
Confidence 6 56644 445567777777766543
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-41 Score=392.65 Aligned_cols=391 Identities=18% Similarity=0.200 Sum_probs=244.3
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCC-CcccccCccccccccccc
Q 001974 59 REINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGS-IPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 59 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~ 137 (988)
+.++.++++++ .+|. + .++|++|+|++|.+++..|..|+.+++|++|+|++|.+.+. .+..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 56777888887 5565 3 36788888888888877777788888888888888877533 355677777777777777
Q ss_pred ccccCCCCCcccCCCccceeeccccccCCCCCcc--ccCcccccccccccccccCccchh-hccccCccEEEeccCCCCC
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFGGNIPNS--LGQLKELKSLGLGANNLSGIIPPS-IYNLSLLANFSVPRNQFHG 214 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~L~~N~i~~ 214 (988)
|++++..|..|.++++|++|+|++|++++..+.. |.++++|++|+|++|++++..|.. +.++++|++|++++|++.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~- 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK- 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-
Confidence 7777666666777777777777777666433322 566666666666666666554444 455555555555555555
Q ss_pred CCCCcccccCCCCcceeccccccccccCcccccC--CcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCc
Q 001974 215 SLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNA--SKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDE 292 (988)
Q Consensus 215 ~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 292 (988)
+..+..+..+ .+|+.|++++|.+.+..+..+.
T Consensus 168 ------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------------- 201 (455)
T 3v47_A 168 ------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------------- 201 (455)
T ss_dssp ------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----------------------
T ss_pred ------------------------ccChhhhhccccccccccccccCcccccchhhcc----------------------
Confidence 3333333322 2333333433333332222111
Q ss_pred hhhhcccccCCCCcEEEeecccCCCCCCchhhhcc--ccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCc
Q 001974 293 MSFMNSLANCSNLRTLIFAANKLRGALPHSIANLS--DQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPK 370 (988)
Q Consensus 293 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 370 (988)
......+..+++|++|++++|++++..|..+.... .+|+.|++++|.+.+.. +..+.+.+..+.
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~ 267 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNF 267 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTT
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCccc
Confidence 00001122334455555555555444444443321 24555555555544221 111222222222
Q ss_pred ccCC--CCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhc
Q 001974 371 EMGK--LQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLT 448 (988)
Q Consensus 371 ~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 448 (988)
.+.. .++|+.|++++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+.+++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 2322 25677777777777766777777777777777777777777777777777777777777777755566667777
Q ss_pred ccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCc
Q 001974 449 YLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPS 515 (988)
Q Consensus 449 ~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 515 (988)
.| ++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|.
T Consensus 348 ~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 348 KL-EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cC-CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 77 7778888877777788888888999999999999976666778899999999999999988773
No 50
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.8e-41 Score=369.30 Aligned_cols=251 Identities=22% Similarity=0.295 Sum_probs=208.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|++.+.||+|+||+||+|++..+++.||+|++........+.+.+|+.++++++||||+++++++.. ++..+
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~ 93 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDELW 93 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-----CCEEE
Confidence 4689999999999999999999988999999999987666667789999999999999999999998643 47899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEe
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVG 821 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 821 (988)
+||||+++|+|.+++... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 94 lv~e~~~~~~L~~~~~~~------------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~ 158 (297)
T 3fxz_A 94 VVMEYLAGGSLTDVVTET------------CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLT 158 (297)
T ss_dssp EEEECCTTCBHHHHHHHS------------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEEC
T ss_pred EEEECCCCCCHHHHHhhc------------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEe
Confidence 999999999999998542 478999999999999999999999 99999999999999999999999
Q ss_pred eecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHH
Q 001974 822 DFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTAL 901 (988)
Q Consensus 822 DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 901 (988)
|||++......... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..... . .......
T Consensus 159 Dfg~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~-~~~~~~~ 229 (297)
T 3fxz_A 159 DFGFCAQITPEQSK----RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP----L-RALYLIA 229 (297)
T ss_dssp CCTTCEECCSTTCC----BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----H-HHHHHHH
T ss_pred eCCCceecCCcccc----cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH----H-HHHHHHH
Confidence 99999865443221 2235699999999999999999999999999999999999999863211 0 0000000
Q ss_pred hhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 902 LDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 902 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
... ......+..++..+.+++.+||+.||++|||++|+++
T Consensus 230 ~~~-------------------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 230 TNG-------------------------TPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHC-------------------------SCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hCC-------------------------CCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 000 0001122356778999999999999999999999986
No 51
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=5.1e-42 Score=379.83 Aligned_cols=289 Identities=35% Similarity=0.592 Sum_probs=227.9
Q ss_pred hhccccCHHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEE
Q 001974 648 KALQKVSYESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVI 726 (988)
Q Consensus 648 ~~~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~ 726 (988)
.....+++.++....++|++.+.||+|+||.||+|++. +++.||||++..... .....+.+|++++++++||||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~ 93 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR 93 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceE
Confidence 44677899999999999999999999999999999865 789999999875432 2334789999999999999999999
Q ss_pred eecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCC
Q 001974 727 TSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLK 806 (988)
Q Consensus 727 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 806 (988)
+++. .++..++||||+++|+|.+++....... ..+++..++.++.|++.||+|||+.+.++|+|||||
T Consensus 94 ~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~~-------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlk 161 (326)
T 3uim_A 94 GFCM-----TPTERLLVYPYMANGSVASCLRERPESQ-------PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 161 (326)
T ss_dssp EEEC-----CSSCCEEEEECCTTCBHHHHHHCCSTTC-------CCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCS
T ss_pred EEEe-----cCCceEEEEEeccCCCHHHHHHhccccC-------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCc
Confidence 9964 3477899999999999999997654321 258999999999999999999999866799999999
Q ss_pred CCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCcc
Q 001974 807 PGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVM 886 (988)
Q Consensus 807 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~ 886 (988)
|+||+++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||+..
T Consensus 162 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 238 (326)
T 3uim_A 162 AANILLDEEFEAVVGDFGLAKLMDYKDTH---VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLA 238 (326)
T ss_dssp GGGEEECTTCCEEECCCSSCEECCSSSSC---EECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHH
T ss_pred hhhEEECCCCCEEeccCccccccCccccc---ccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccc
Confidence 99999999999999999999866433221 122345899999999998888999999999999999999999999632
Q ss_pred c---cCCcchHHHHHHHHhhh-hhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHH
Q 001974 887 F---EGDLNLHNYARTALLDH-VIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSIT 962 (988)
Q Consensus 887 ~---~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ 962 (988)
. ..+.....+........ .....+..... ....+.+..+.+++.+||+.||++|||++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~li~~cl~~dP~~Rps~~ 300 (326)
T 3uim_A 239 RLANDDDVMLLDWVKGLLKEKKLEALVDVDLQG------------------NYKDEEVEQLIQVALLCTQSSPMERPKMS 300 (326)
T ss_dssp HHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTT------------------SCCHHHHHHHHHHHHHHTCSCGGGSCCHH
T ss_pred ccccccchhHHHHHHHHhhchhhhhhcChhhcc------------------ccCHHHHHHHHHHHHHHhCcCCccCCCHH
Confidence 2 11222333322222211 11222221111 12235667899999999999999999999
Q ss_pred HHHHHHHH
Q 001974 963 NVVHELQS 970 (988)
Q Consensus 963 evl~~L~~ 970 (988)
|+++.|++
T Consensus 301 ell~~L~~ 308 (326)
T 3uim_A 301 EVVRMLEG 308 (326)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999986
No 52
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2.5e-41 Score=369.87 Aligned_cols=268 Identities=23% Similarity=0.380 Sum_probs=208.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHh--cCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKN--IRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||+||+|++ +++.||||++... ....+..|.+++.. ++||||+++++++... ......
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCce
Confidence 46899999999999999999998 7899999998643 33556667777766 7999999999987653 334567
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHH--------cCCCCCeEeccCCCCCee
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLH--------HHCQEPVLHCDLKPGNVL 811 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~NIl 811 (988)
.++||||+++|+|.++++.. .+++..++.++.|++.||+||| +. +|+||||||+||+
T Consensus 81 ~~lv~e~~~~g~L~~~l~~~------------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil 145 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQLT------------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNIL 145 (301)
T ss_dssp EEEEECCCTTCBHHHHHTTC------------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEE
T ss_pred eEEehhhccCCCHHHHHhhc------------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEE
Confidence 89999999999999999543 5899999999999999999999 76 9999999999999
Q ss_pred eCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC------CCCCccchHHHHHHHHHHHhC------
Q 001974 812 LDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS------EVSTNGDIYSYGILLLEMVTG------ 879 (988)
Q Consensus 812 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwslG~vl~elltg------ 879 (988)
++.++.+||+|||+|+.................||+.|+|||++.+. .++.++|||||||++|||+||
T Consensus 146 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~ 225 (301)
T 3q4u_A 146 VKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGI 225 (301)
T ss_dssp ECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTB
T ss_pred EcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccc
Confidence 99999999999999986655433222223334699999999998876 456799999999999999999
Q ss_pred ----CCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCC
Q 001974 880 ----KKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESP 955 (988)
Q Consensus 880 ----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP 955 (988)
+.||......+............... .+.. ... .....++.++.+++.+||+.||
T Consensus 226 ~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~--------------~~~~~~~~~l~~li~~cl~~dP 284 (301)
T 3q4u_A 226 VEDYKPPFYDVVPNDPSFEDMRKVVCVDQQ----RPNI---PNR--------------WFSDPTLTSLAKLMKECWYQNP 284 (301)
T ss_dssp CCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCC---CGG--------------GGGSHHHHHHHHHHHHHCCSSG
T ss_pred cccccccccccCCCCcchhhhhHHHhccCC----CCCC---Chh--------------hccCccHHHHHHHHHHHhhcCh
Confidence 77776544443333322222111110 0000 000 0122467789999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 001974 956 QDRMSITNVVHELQSV 971 (988)
Q Consensus 956 ~~RPs~~evl~~L~~i 971 (988)
++|||++|+++.|+++
T Consensus 285 ~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 285 SARLTALRIKKTLTKI 300 (301)
T ss_dssp GGSCCHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHhcc
Confidence 9999999999999986
No 53
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=3.6e-41 Score=368.80 Aligned_cols=267 Identities=25% Similarity=0.399 Sum_probs=204.7
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
....++|++.+.||+|+||+||+|++ .|+.||||++..... ...+.+.+|++++++++||||+++++++. .
T Consensus 33 ~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~ 105 (309)
T 3p86_A 33 DIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT-----Q 105 (309)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----S
T ss_pred cCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----E
Confidence 34456799999999999999999988 688999999865432 33467899999999999999999999954 4
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC--eEeccCCCCCeeeCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP--VLHCDLKPGNVLLDN 814 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~ 814 (988)
++..++||||+++|+|.+++..... ...+++..++.++.||+.||+|||+. + |+||||||+||+++.
T Consensus 106 ~~~~~lv~e~~~~~~L~~~l~~~~~--------~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~ 174 (309)
T 3p86_A 106 PPNLSIVTEYLSRGSLYRLLHKSGA--------REQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDK 174 (309)
T ss_dssp TTCCEEEEECCTTCBHHHHHHSTTH--------HHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECT
T ss_pred CCceEEEEecCCCCcHHHHHhhcCC--------CCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeC
Confidence 4778999999999999999976431 13589999999999999999999998 8 999999999999999
Q ss_pred CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 815 DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 815 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
++.+||+|||+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 175 ~~~~kL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~----- 245 (309)
T 3p86_A 175 KYTVKVCDFGLSRLKASTFL----SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA----- 245 (309)
T ss_dssp TCCEEECCCC---------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH-----
T ss_pred CCcEEECCCCCCcccccccc----ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----
Confidence 99999999999975433211 122346899999999999999999999999999999999999998642111
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
...... . ........+..+++++.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus 246 ~~~~~~-----~---------------------~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 246 QVVAAV-----G---------------------FKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp HHHHHH-----H---------------------HSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred HHHHHH-----H---------------------hcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 110000 0 00011122345778899999999999999999999999999999776
Q ss_pred hhhh
Q 001974 975 LLEA 978 (988)
Q Consensus 975 ~~~~ 978 (988)
...+
T Consensus 300 ~~p~ 303 (309)
T 3p86_A 300 AVPP 303 (309)
T ss_dssp ----
T ss_pred CCCC
Confidence 5543
No 54
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=2.2e-41 Score=372.94 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=206.0
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
..++|++.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+++++.++||||+++++++. .++
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 87 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIE-----TEK 87 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----ECC
Confidence 3568999999999999999999998899999999997542 234467889999999999999999999954 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++... .++++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~-----------~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~ 153 (328)
T 3fe3_A 88 TLYLIMEYASGGEVFDYLVAH-----------GRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNI 153 (328)
T ss_dssp EEEEEECCCTTCBHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCE
T ss_pred EEEEEEECCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCE
Confidence 899999999999999998543 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCC-CccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVS-TNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||++........ .....||+.|+|||++.+..++ .++||||+||++|||++|+.||... ......
T Consensus 154 kl~DFG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~ 223 (328)
T 3fe3_A 154 KIADFGFSNEFTVGGK-----LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ-----NLKELR 223 (328)
T ss_dssp EECSTTCCGGGSSSCG-----GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHH
T ss_pred EEeeccCceecCCCCc-----cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC-----CHHHHH
Confidence 9999999986544322 2234699999999999888765 7899999999999999999998632 111111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
... .......+..+++++.+++.+||+.||++|||++|+++.
T Consensus 224 ~~i----------------------------~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 224 ERV----------------------------LRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp HHH----------------------------HHCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred HHH----------------------------HhCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 100 011112233467789999999999999999999999863
No 55
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=373.36 Aligned_cols=252 Identities=24% Similarity=0.343 Sum_probs=199.0
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
..++|++.+.||+|+||+||+|++..+|+.||||++.... ....+.+.+|++++++++||||+++++++. ..+.
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~-----~~~~ 82 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLE-----TANK 82 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----eCCE
Confidence 4578999999999999999999999999999999986543 233467899999999999999999999954 4578
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++|+|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||++++++.+|
T Consensus 83 ~~lv~E~~~gg~L~~~l~~~-----------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~k 148 (347)
T 3zgw_A 83 IFMVLEYCPGGELFDYIISQ-----------DRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLK 148 (347)
T ss_dssp EEEEEECCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEE
T ss_pred EEEEEeCCCCCCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEE
Confidence 99999999999999998543 3689999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||++......... ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||... .......
T Consensus 149 L~DFG~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~-----~~~~~~~ 220 (347)
T 3zgw_A 149 LIDFGLCAKPKGNKDY---HLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDD-----NVMALYK 220 (347)
T ss_dssp ECCCTTCBC-----------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHH
T ss_pred EEeccCcccccCCCCc---cccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC-----CHHHHHH
Confidence 9999998765432211 1223468999999999998775 88999999999999999999998632 1111111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.. .......+..+++++.+++.+||+.||++|||++|+++.
T Consensus 221 ~i----------------------------~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 221 KI----------------------------MRGKYDVPKWLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp HH----------------------------HHTCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HH----------------------------HcCCCCCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 10 011112223466788999999999999999999999874
No 56
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.9e-41 Score=369.53 Aligned_cols=282 Identities=22% Similarity=0.350 Sum_probs=213.4
Q ss_pred hCCCCCCceeccccceeEEEEE----ECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGA----FDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||+||+|+ ...+++.||||++........+.+.+|++++++++||||+++++++... +.
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHH---HH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CC
Confidence 4679999999999999999999 4568899999999866666667899999999999999999999987542 23
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~ 152 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHK----------ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENR 152 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCG----------GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTE
T ss_pred CceEEEEEeCCCCCHHHHHHhcc----------cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCe
Confidence 56899999999999999996543 3589999999999999999999998 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||+++......... .......++..|+|||++.+..++.++||||||+++|||+||..||..... .+.
T Consensus 153 ~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~------~~~ 225 (295)
T 3ugc_A 153 VKIGDFGLTKVLPQDKEFF-KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFM 225 (295)
T ss_dssp EEECCCCSCC--------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH------HHH
T ss_pred EEEccCcccccccCCccee-eeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH------HHH
Confidence 9999999998765432211 112233477889999999999999999999999999999999999763211 000
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhh
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALL 976 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 976 (988)
........... .................+..+++++.+++.+||+.||++|||++|+++.|+++.+++.
T Consensus 226 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l~ 294 (295)
T 3ugc_A 226 RMIGNDKQGQM----------IVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA 294 (295)
T ss_dssp HHHCTTCCTHH----------HHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred hhhcCccccch----------hHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence 00000000000 0000000011111223345688899999999999999999999999999999987653
No 57
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=370.45 Aligned_cols=263 Identities=24% Similarity=0.443 Sum_probs=210.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCC---eEEEEEEeecc-ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDG---TIVAIKVFNLQ-RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~---~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|++..++ ..||||+++.. .....+.+.+|+.++++++||||+++++++.. +
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 122 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR-----G 122 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG-----G
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----C
Confidence 357888999999999999999997544 45999999754 23345679999999999999999999999643 4
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~ 189 (325)
T 3kul_A 123 RLAMIVTEYMENGSLDTFLRTHD----------GQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLV 189 (325)
T ss_dssp GCCEEEEECCTTCBHHHHHHTTT----------TCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred CccEEEeeCCCCCcHHHHHHhcc----------cCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCC
Confidence 77899999999999999996543 3689999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||+++......... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ..
T Consensus 190 ~kl~Dfg~a~~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~-----~~ 263 (325)
T 3kul_A 190 CKVSDFGLSRVLEDDPDAA-YTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR-----DV 263 (325)
T ss_dssp EEECCCSSCEECC----CC-EECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH-----HH
T ss_pred EEECCCCcccccccCccce-eeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH-----HH
Confidence 9999999998765432221 12223446789999999998899999999999999999999 99998632111 11
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
.. .+.. ......+..++.++.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 264 ~~-----~~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~ 315 (325)
T 3kul_A 264 IS-----SVEE----------------------GYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP 315 (325)
T ss_dssp HH-----HHHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred HH-----HHHc----------------------CCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence 00 0000 0011223467788999999999999999999999999999997653
No 58
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=2.5e-40 Score=364.43 Aligned_cols=263 Identities=24% Similarity=0.301 Sum_probs=212.8
Q ss_pred cccCHHHHHHhhCC----------CCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCC
Q 001974 651 QKVSYESLFKATDG----------FSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHR 720 (988)
Q Consensus 651 ~~~~~~~l~~~~~~----------y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 720 (988)
..++++++..+++. |+..+.||+|+||.||+|++..+|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34666766666543 66778999999999999999889999999999876666667899999999999999
Q ss_pred CceEEEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCe
Q 001974 721 NLVKVITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPV 800 (988)
Q Consensus 721 niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~i 800 (988)
||+++++++.. ++..++||||+++++|.+++... .+++.++..++.|++.||+|||+. +|
T Consensus 103 niv~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~------------~l~~~~~~~i~~qi~~~L~~LH~~---~i 162 (321)
T 2c30_A 103 NVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQV------------RLNEEQIATVCEAVLQALAYLHAQ---GV 162 (321)
T ss_dssp TBCCEEEEEEE-----TTEEEEEECCCCSCBHHHHHTTC------------CCCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred CcceEEEEEEE-----CCEEEEEEecCCCCCHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHC---Ce
Confidence 99999999654 47899999999999999998643 588999999999999999999998 99
Q ss_pred EeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCC
Q 001974 801 LHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGK 880 (988)
Q Consensus 801 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~ 880 (988)
+||||||+||+++.++.+||+|||++......... .....||+.|+|||++.+..++.++|||||||++|||++|+
T Consensus 163 vH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~ 238 (321)
T 2c30_A 163 IHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK----RKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGE 238 (321)
T ss_dssp ECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC----BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred ecCCCCHHHEEECCCCcEEEeeeeeeeecccCccc----cccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999865443211 22346999999999999999999999999999999999999
Q ss_pred CCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC
Q 001974 881 KPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS 960 (988)
Q Consensus 881 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs 960 (988)
.||..... .... ..+.....+. ......+++++.+++.+||+.||++|||
T Consensus 239 ~pf~~~~~-----~~~~-----~~~~~~~~~~--------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps 288 (321)
T 2c30_A 239 PPYFSDSP-----VQAM-----KRLRDSPPPK--------------------LKNSHKVSPVLRDFLERMLVRDPQERAT 288 (321)
T ss_dssp CTTTTSCH-----HHHH-----HHHHHSSCCC--------------------CTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred CCCCCCCH-----HHHH-----HHHhcCCCCC--------------------cCccccCCHHHHHHHHHHccCChhhCcC
Confidence 99863211 1111 0111100000 0112246778999999999999999999
Q ss_pred HHHHHHH
Q 001974 961 ITNVVHE 967 (988)
Q Consensus 961 ~~evl~~ 967 (988)
++|+++.
T Consensus 289 ~~ell~h 295 (321)
T 2c30_A 289 AQELLDH 295 (321)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 9999863
No 59
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=1.6e-40 Score=373.07 Aligned_cols=272 Identities=20% Similarity=0.403 Sum_probs=213.1
Q ss_pred hCCCCCCceeccccceeEEEEEEC-------CCCeEEEEEEeecccc-chhHHHHHHHHHHHhc-CCCCceEEEeecccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFD-------QDGTIVAIKVFNLQRH-GASKSFLAECKALKNI-RHRNLVKVITSCSSI 732 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 732 (988)
.++|++.+.||+|+||.||+|++. .++..||||+++.... ...+.+.+|+.+++++ +||||++++++|.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC--
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc--
Confidence 467899999999999999999874 3456899999975432 3346789999999999 8999999999964
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCchh-----hhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCC
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDV-----EIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKP 807 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~-----~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 807 (988)
.++..++||||+++|+|.+++.......... ......+++.+++.++.||+.||+|||++ +|+||||||
T Consensus 158 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp 231 (370)
T 2psq_A 158 ---QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 231 (370)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCG
T ss_pred ---cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccch
Confidence 3478999999999999999997654211100 01113589999999999999999999999 999999999
Q ss_pred CCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCcc
Q 001974 808 GNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVM 886 (988)
Q Consensus 808 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~ 886 (988)
+||+++.++.+||+|||+++......... ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||...
T Consensus 232 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~ 309 (370)
T 2psq_A 232 RNVLVTENNVMKIADFGLARDINNIDYYK--KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI 309 (370)
T ss_dssp GGEEECTTCCEEECCCSSCEETTCCCTTC--TTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred hhEEECCCCCEEEccccCCcccCccccee--cccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999998654432211 1223457889999999999999999999999999999999 99998642
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
... .. ... +.. ......+..++.++.+++.+||+.||++|||++|+++
T Consensus 310 ~~~--~~---~~~-----~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~ 357 (370)
T 2psq_A 310 PVE--EL---FKL-----LKE----------------------GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 357 (370)
T ss_dssp CGG--GH---HHH-----HHT----------------------TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CHH--HH---HHH-----Hhc----------------------CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence 111 00 000 000 0011223457788999999999999999999999999
Q ss_pred HHHHHHHHh
Q 001974 967 ELQSVKNAL 975 (988)
Q Consensus 967 ~L~~i~~~~ 975 (988)
.|+++.+..
T Consensus 358 ~L~~il~~~ 366 (370)
T 2psq_A 358 DLDRILTLT 366 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997654
No 60
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=3.8e-41 Score=379.68 Aligned_cols=263 Identities=25% Similarity=0.430 Sum_probs=212.4
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
...++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|++++++++||||+++++++. .++
T Consensus 111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 185 (377)
T 3cbl_A 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT-----QKQ 185 (377)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC-----SSS
T ss_pred EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-----cCC
Confidence 345678999999999999999999988999999999874422 23356889999999999999999999964 347
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 186 ~~~lv~e~~~~g~L~~~l~~~~----------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~ 252 (377)
T 3cbl_A 186 PIYIVMELVQGGDFLTFLRTEG----------ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVL 252 (377)
T ss_dssp SCEEEEECCTTCBHHHHHHHHG----------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred CcEEEEEcCCCCCHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcE
Confidence 7899999999999999986432 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||+++....... ........++..|+|||++.+..++.++|||||||++|||+| |..||...... . .
T Consensus 253 kl~DfG~s~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~-----~-~ 324 (377)
T 3cbl_A 253 KISDFGMSREEADGVY--AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ-----Q-T 324 (377)
T ss_dssp EECCGGGCEECTTSEE--ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH-----H-H
T ss_pred EECcCCCceecCCCce--eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-----H-H
Confidence 9999999986433211 111111235778999999998899999999999999999999 99998643111 0 0
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
.+.+.. ......+..++.++.+++.+||+.||++|||++++++.|++++++
T Consensus 325 --------~~~~~~------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 325 --------REFVEK------------------GGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp --------HHHHHT------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHc------------------CCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 000000 001122335788899999999999999999999999999999875
No 61
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1.9e-40 Score=366.31 Aligned_cols=250 Identities=22% Similarity=0.303 Sum_probs=205.3
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||+||+|+++.+|+.||+|+++.. .......+.+|+++++.++||||+++++++. ..+
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~-----~~~ 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ-----THD 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEE-----CSS
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEE-----eCC
Confidence 46799999999999999999999999999999999743 2334567889999999999999999999854 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~v 144 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSRE-----------RVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHI 144 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHHH-----------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCE
T ss_pred EEEEEEeCCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCE
Confidence 899999999999999988643 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||... .......
T Consensus 145 kL~DFG~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~ 215 (337)
T 1o6l_A 145 KITDFGLCKEGISDGA----TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHERLFE 215 (337)
T ss_dssp EECCCTTCBCSCCTTC----CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHH
T ss_pred EEeeccchhhcccCCC----cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-----CHHHHHH
Confidence 9999999985332211 122356999999999999999999999999999999999999998632 1111111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-----CHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-----SITNVVHE 967 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~~ 967 (988)
... ......+..+++++.+++.+||+.||++|| +++|+++.
T Consensus 216 ~i~----------------------------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 216 LIL----------------------------MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp HHH----------------------------HCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred HHH----------------------------cCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 100 001112335677899999999999999999 89998764
No 62
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1e-40 Score=368.10 Aligned_cols=284 Identities=23% Similarity=0.282 Sum_probs=210.4
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
...++|++.+.||+|+||+||+|++ .++.||||+++... ........|+.++++++||||+++++++.... .....
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~ 96 (322)
T 3soc_A 21 FQSMPLQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVD 96 (322)
T ss_dssp ETTEEEEEEEEEECSTTCEEEEEEE--TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEE
T ss_pred cchhhchhhheecccCceEEEEEEE--CCCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCce
Confidence 3457899999999999999999998 48999999996443 23355667999999999999999999976541 12345
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcC-------CCCCeEeccCCCCCeee
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHH-------CQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-------~~~~ivH~Dlkp~NIll 812 (988)
.++||||+++|+|.+++... .+++..++.++.|++.||+|||+. +.++|+||||||+||++
T Consensus 97 ~~lv~e~~~~g~L~~~l~~~------------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill 164 (322)
T 3soc_A 97 LWLITAFHEKGSLSDFLKAN------------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLL 164 (322)
T ss_dssp EEEEEECCTTCBHHHHHHHC------------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEE
T ss_pred EEEEEecCCCCCHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEE
Confidence 79999999999999999542 589999999999999999999985 13389999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC-----CCCCccchHHHHHHHHHHHhCCCCCCccc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-----EVSTNGDIYSYGILLLEMVTGKKPTDVMF 887 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~sDvwslG~vl~elltg~~p~~~~~ 887 (988)
+.++.+||+|||+++........ .......||+.|+|||++.+. .++.++|||||||++|||+||+.||....
T Consensus 165 ~~~~~~kL~DFg~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~ 242 (322)
T 3soc_A 165 KNNLTACIADFGLALKFEAGKSA--GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPV 242 (322)
T ss_dssp CTTCCEEECCCTTCEEECTTSCC--CCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCC
T ss_pred CCCCeEEEccCCcccccccccCc--cccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCc
Confidence 99999999999999866543321 112335689999999998873 56678999999999999999999987533
Q ss_pred cCCc-chHHHHHHH-Hhhhhhh-hhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHH
Q 001974 888 EGDL-NLHNYARTA-LLDHVID-IVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNV 964 (988)
Q Consensus 888 ~~~~-~~~~~~~~~-~~~~~~~-~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ev 964 (988)
.... .+....... ....+.+ ............ ......++.++.+++.+||+.||++|||++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el 309 (322)
T 3soc_A 243 DEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRD-------------YWQKHAGMAMLCETIEECWDHDAEARLSAGCV 309 (322)
T ss_dssp CCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCG-------------GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred chhccchhhhhccCCchhhhhhhhhcccCCCCccc-------------cccccchHHHHHHHHHHHccCChhhCcCHHHH
Confidence 2211 111000000 0000000 000000000000 00112456779999999999999999999999
Q ss_pred HHHHHHHHHH
Q 001974 965 VHELQSVKNA 974 (988)
Q Consensus 965 l~~L~~i~~~ 974 (988)
++.|+++.+.
T Consensus 310 l~~L~~l~~~ 319 (322)
T 3soc_A 310 GERITQMQRL 319 (322)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 63
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.4e-40 Score=368.84 Aligned_cols=252 Identities=19% Similarity=0.249 Sum_probs=205.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc------hhHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG------ASKSFLAECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
.+.|++.+.||+|+||.||+|+++.+|+.||+|+++..... ..+.+.+|+.++++++||||+++++++.
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~----- 85 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYE----- 85 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEE-----
Confidence 46799999999999999999999999999999999754322 2467899999999999999999999954
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
+++..++||||+++|+|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 86 ~~~~~~lv~e~~~gg~L~~~l~~~~-----------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~ 151 (361)
T 2yab_A 86 NRTDVVLILELVSGGELFDFLAQKE-----------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151 (361)
T ss_dssp CSSEEEEEEECCCSCBHHHHHTTCS-----------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCT
T ss_pred eCCEEEEEEEcCCCCcHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCC
Confidence 4588999999999999999997543 689999999999999999999999 99999999999999887
Q ss_pred C----cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCc
Q 001974 816 M----IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL 891 (988)
Q Consensus 816 ~----~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 891 (988)
+ .+||+|||++........ .....||+.|+|||++.+..++.++||||+||++|+|++|..||....
T Consensus 152 ~~~~~~vkl~DFG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~---- 222 (361)
T 2yab_A 152 NIPIPHIKLIDFGLAHEIEDGVE-----FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT---- 222 (361)
T ss_dssp TSSSCCEEECCCSSCEECCTTCC-----CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS----
T ss_pred CCCccCEEEEecCCceEcCCCCc-----cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC----
Confidence 7 799999999987654322 123469999999999999999999999999999999999999986321
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
....... +. ......... ....++.++.+++.+||..||++|||++|+++
T Consensus 223 -~~~~~~~-----i~---~~~~~~~~~----------------~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 223 -KQETLAN-----IT---AVSYDFDEE----------------FFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp -HHHHHHH-----HH---TTCCCCCHH----------------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -HHHHHHH-----HH---hcCCCCCch----------------hccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1111110 00 000000000 01246678999999999999999999999985
No 64
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=2e-40 Score=372.52 Aligned_cols=281 Identities=16% Similarity=0.232 Sum_probs=214.9
Q ss_pred hhCCCCCCceeccccceeEEEEEECCC-----CeEEEEEEeeccccch-----------hHHHHHHHHHHHhcCCCCceE
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQD-----GTIVAIKVFNLQRHGA-----------SKSFLAECKALKNIRHRNLVK 724 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~-----~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~ 724 (988)
..++|++.+.||+|+||.||+|.+..+ ++.||||++....... ...+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 356899999999999999999999654 5789999986543211 123445566677788999999
Q ss_pred EEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEecc
Q 001974 725 VITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCD 804 (988)
Q Consensus 725 ~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~D 804 (988)
+++++... .......++||||+ +++|.+++.... ..+++.+++.|+.||+.||+|||+. +|+|||
T Consensus 113 ~~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~~----------~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrD 177 (364)
T 3op5_A 113 YWGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEANA----------KRFSRKTVLQLSLRILDILEYIHEH---EYVHGD 177 (364)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHTT----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCC
T ss_pred EEeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhcc----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEec
Confidence 99997653 22335689999999 999999996543 3689999999999999999999999 999999
Q ss_pred CCCCCeeeC--CCCcEEEeeecccccccccccccc---eeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhC
Q 001974 805 LKPGNVLLD--NDMIAHVGDFGLARVRQEVSNLTQ---SCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTG 879 (988)
Q Consensus 805 lkp~NIll~--~~~~~kL~DfG~a~~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg 879 (988)
|||+|||++ .++.+||+|||+++.......... .......||+.|+|||++.+..++.++|||||||++|||+||
T Consensus 178 lkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g 257 (364)
T 3op5_A 178 IKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTG 257 (364)
T ss_dssp CCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhC
Confidence 999999999 889999999999987654322111 111334599999999999999999999999999999999999
Q ss_pred CCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC
Q 001974 880 KKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM 959 (988)
Q Consensus 880 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP 959 (988)
+.||...... ..+...........+.+++++.+. ...+|.++.+++..||+.||++||
T Consensus 258 ~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~li~~cl~~~p~~RP 315 (364)
T 3op5_A 258 HLPWEDNLKD-PKYVRDSKIRYRENIASLMDKCFP---------------------AANAPGEIAKYMETVKLLDYTEKP 315 (364)
T ss_dssp CCTTGGGTTC-HHHHHHHHHHHHHCHHHHHHHHSC---------------------TTCCCHHHHHHHHHHHTCCTTCCC
T ss_pred CCCccccccC-HHHHHHHHHHhhhhHHHHHHHhcc---------------------cccCHHHHHHHHHHHhcCCCCCCC
Confidence 9999743222 222222222222223333322221 125678899999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhh
Q 001974 960 SITNVVHELQSVKNALLEA 978 (988)
Q Consensus 960 s~~evl~~L~~i~~~~~~~ 978 (988)
+++++++.|+++.++....
T Consensus 316 ~~~~l~~~l~~~~~~~~~~ 334 (364)
T 3op5_A 316 LYENLRDILLQGLKAIGSK 334 (364)
T ss_dssp CHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHcCCC
Confidence 9999999999998875443
No 65
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-40 Score=364.50 Aligned_cols=253 Identities=20% Similarity=0.280 Sum_probs=206.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|++.+.||+|+||.||+|++..+++.||+|+++... .....+.+|+.+++.++||||+++++++. +.+..+
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~ 77 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE-----SMEELV 77 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEe-----cCCEEE
Confidence 468999999999999999999999999999999987443 34567889999999999999999999964 347899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC--CCcEE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN--DMIAH 819 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~k 819 (988)
+||||+++|+|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++. ++.+|
T Consensus 78 lv~e~~~g~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~k 144 (321)
T 1tki_A 78 MIFEFISGLDIFERINTSA----------FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIK 144 (321)
T ss_dssp EEECCCCCCBHHHHHTSSS----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEE
T ss_pred EEEEeCCCCCHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEE
Confidence 9999999999999997653 2689999999999999999999999 9999999999999987 78999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||+++........ ....||+.|+|||++.+..++.++||||+||++|||++|..||..... ......
T Consensus 145 l~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~ 214 (321)
T 1tki_A 145 IIEFGQARQLKPGDNF-----RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-----QQIIEN 214 (321)
T ss_dssp ECCCTTCEECCTTCEE-----EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH
T ss_pred EEECCCCeECCCCCcc-----ccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHH
Confidence 9999999876543221 224589999999999998899999999999999999999999863211 111111
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.. ......... ....++.++.+++.+||+.||++|||++|+++.
T Consensus 215 i~--------~~~~~~~~~----------------~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 215 IM--------NAEYTFDEE----------------AFKEISIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp HH--------HTCCCCCHH----------------HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HH--------cCCCCCChh----------------hhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 10 000000000 012467789999999999999999999999874
No 66
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.2e-40 Score=355.89 Aligned_cols=259 Identities=24% Similarity=0.407 Sum_probs=211.2
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++. +++.||+|++.... ...+++.+|++++++++||||+++++++. +++..
T Consensus 8 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 80 (269)
T 4hcu_A 8 DPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPI 80 (269)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSE
T ss_pred ChhhceeeheecCCCccEEEEEEec-CCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCce
Confidence 3467999999999999999999997 68889999997543 33477999999999999999999999954 44778
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl 147 (269)
T 4hcu_A 81 CLVFEFMEHGCLSDYLRTQR----------GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKV 147 (269)
T ss_dssp EEEEECCTTCBHHHHHHTTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEE
T ss_pred EEEEEeCCCCcHHHHHHhcC----------cccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEe
Confidence 99999999999999996544 3689999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... .....
T Consensus 148 ~Dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~-----~~~~~- 218 (269)
T 4hcu_A 148 SDFGMTRFVLDDQY---TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVE- 218 (269)
T ss_dssp CCTTGGGGBCCHHH---HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHH-
T ss_pred cccccccccccccc---ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH-----HHHHH-
Confidence 99999986543221 11223457888999999998899999999999999999999 9999863211 11110
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
.+... .....+...+.++.+++.+||+.||++|||++|+++.|+++.++
T Consensus 219 ----~~~~~----------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 219 ----DISTG----------------------FRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp ----HHHTT----------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----HHhcC----------------------ccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 00000 01111234567899999999999999999999999999999764
No 67
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.8e-40 Score=372.77 Aligned_cols=263 Identities=24% Similarity=0.462 Sum_probs=200.6
Q ss_pred hCCCCCCceeccccceeEEEEEEC---CCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFD---QDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~---~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|++. .++..||||+++... ....+.+.+|+.++++++||||+++++++. .+
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~ 118 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT-----KS 118 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eC
Confidence 457999999999999999999986 457789999997543 334467999999999999999999999964 34
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++|+|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 119 ~~~~lv~e~~~~~sL~~~l~~~~----------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~ 185 (373)
T 2qol_A 119 KPVMIVTEYMENGSLDSFLRKHD----------AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLV 185 (373)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTT----------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCC
T ss_pred CceEEEEeCCCCCcHHHHHHhCC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCC
Confidence 78899999999999999997653 3689999999999999999999998 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||+++.......... ......++..|+|||++.+..++.++|||||||++|||++ |+.||..... ...
T Consensus 186 ~kl~Dfg~a~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~-----~~~ 259 (373)
T 2qol_A 186 CKVSDFGLGRVLEDDPEAAY-TTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN-----QDV 259 (373)
T ss_dssp EEECCC-----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH-----HHH
T ss_pred EEECcCccccccccCCccce-eccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH-----HHH
Confidence 99999999987654322111 1122346788999999998999999999999999999998 9999863211 010
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
. ..+... .....+..++.++.+++.+||+.||++||+++|+++.|+++.+..
T Consensus 260 ~---------~~i~~~------------------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 260 I---------KAVDEG------------------YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp H---------HHHHTT------------------EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred H---------HHHHcC------------------CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 0 000000 011123367788999999999999999999999999999997653
No 68
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=1.7e-39 Score=356.37 Aligned_cols=284 Identities=31% Similarity=0.458 Sum_probs=222.9
Q ss_pred hccccCHHHHHHhhCCCCCC------ceeccccceeEEEEEECCCCeEEEEEEeecc----ccchhHHHHHHHHHHHhcC
Q 001974 649 ALQKVSYESLFKATDGFSST------HLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ----RHGASKSFLAECKALKNIR 718 (988)
Q Consensus 649 ~~~~~~~~~l~~~~~~y~~~------~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~ 718 (988)
....+++.++..++++|... +.||+|+||.||+|.+ +++.||+|++... .....+.+.+|+.++++++
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 88 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ 88 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence 45678999999999988877 8999999999999987 6889999998643 2234567899999999999
Q ss_pred CCCceEEEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 001974 719 HRNLVKVITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQE 798 (988)
Q Consensus 719 h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~ 798 (988)
||||+++++++. .++..++||||+++++|.+++..... ...+++..++.++.|++.||+|||+.
T Consensus 89 h~~i~~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~--------~~~~~~~~~~~i~~~i~~~l~~lH~~--- 152 (307)
T 2nru_A 89 HENLVELLGFSS-----DGDDLCLVYVYMPNGSLLDRLSCLDG--------TPPLSWHMRCKIAQGAANGINFLHEN--- 152 (307)
T ss_dssp CTTBCCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHTGGG--------CCCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CCCeEEEEEEEe-----cCCceEEEEEecCCCcHHHHHHhccC--------CCCCCHHHHHHHHHHHHHHHHHHhcC---
Confidence 999999999954 34788999999999999999864321 13589999999999999999999998
Q ss_pred CeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh
Q 001974 799 PVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT 878 (988)
Q Consensus 799 ~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt 878 (988)
+|+||||||+||++++++.+||+|||+++....... ........||+.|+|||.+.+ .++.++||||||+++|+|++
T Consensus 153 ~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~ 229 (307)
T 2nru_A 153 HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ--TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIIT 229 (307)
T ss_dssp TEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSS--CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHH
T ss_pred CeecCCCCHHHEEEcCCCcEEEeecccccccccccc--cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999986544322 112233468999999998765 58899999999999999999
Q ss_pred CCCCCCccccCCcchHHHHHHHHhh--hhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCC
Q 001974 879 GKKPTDVMFEGDLNLHNYARTALLD--HVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQ 956 (988)
Q Consensus 879 g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 956 (988)
|+.||....... ....+....... .+.+.+++.+. .....++..+.+++.+||+.||+
T Consensus 230 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~~li~~cl~~~p~ 289 (307)
T 2nru_A 230 GLPAVDEHREPQ-LLLDIKEEIEDEEKTIEDYIDKKMN-------------------DADSTSVEAMYSVASQCLHEKKN 289 (307)
T ss_dssp CCCSBCTTBSSS-BTTHHHHHHHTTSCCHHHHSCSSCS-------------------CCCHHHHHHHHHHHHHHTCSSTT
T ss_pred CCCCcccCcchH-HHHHHHHHhhhhhhhhhhhcccccc-------------------ccchHHHHHHHHHHHHHcCCCcc
Confidence 999987543322 122221111111 12222222221 11234667899999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 001974 957 DRMSITNVVHELQSVKN 973 (988)
Q Consensus 957 ~RPs~~evl~~L~~i~~ 973 (988)
+|||++|+++.|+++.+
T Consensus 290 ~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 290 KRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp TSCCHHHHHHHHHHHC-
T ss_pred cCcCHHHHHHHHHHHhc
Confidence 99999999999998854
No 69
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=2.1e-40 Score=365.26 Aligned_cols=255 Identities=23% Similarity=0.342 Sum_probs=203.7
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||+||+|++..+++.||+|++..... ...+.+.+|+.+++.++||||+++++++. .++..
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCCeE
Confidence 4689999999999999999999999999999999864432 23466889999999999999999999954 45788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++|+|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl 146 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEPDI-----------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKI 146 (323)
T ss_dssp EEEEECCTTEEGGGGSBTTT-----------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEE
T ss_pred EEEEEcCCCCcHHHHHhhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEE
Confidence 99999999999999997553 689999999999999999999998 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+++....... ........||+.|+|||++.+..+ +.++|||||||++|||++|+.||.........+..+..
T Consensus 147 ~Dfg~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~- 223 (323)
T 3tki_A 147 SDFGLATVFRYNNR--ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE- 223 (323)
T ss_dssp CCCTTCEECEETTE--ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHT-
T ss_pred EEeeccceeccCCc--ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhc-
Confidence 99999986543221 111223569999999999988775 77899999999999999999999743222111111100
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
... .......++.++.+++.+||+.||++|||++|+++.
T Consensus 224 -----------~~~------------------~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 224 -----------KKT------------------YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp -----------TCT------------------TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -----------ccc------------------cCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 000 000112466778999999999999999999999753
No 70
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=7.7e-41 Score=381.00 Aligned_cols=264 Identities=19% Similarity=0.212 Sum_probs=209.3
Q ss_pred HHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 001974 655 YESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSS 731 (988)
Q Consensus 655 ~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 731 (988)
+.++....++|++.++||+|+||+||+|+++.+++.||+|+++... ......+.+|+.++..++||||+++++++.
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~- 144 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ- 144 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE-
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-
Confidence 4455566789999999999999999999999899999999996422 222345889999999999999999999854
Q ss_pred ccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCee
Q 001974 732 IDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVL 811 (988)
Q Consensus 732 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 811 (988)
+++..++||||+++|+|.+++.... ..+++..++.++.||+.||+|||+. +||||||||+|||
T Consensus 145 ----~~~~~~lV~Ey~~gg~L~~~l~~~~----------~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NIL 207 (437)
T 4aw2_A 145 ----DDNNLYLVMDYYVGGDLLTLLSKFE----------DRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNIL 207 (437)
T ss_dssp ----CSSEEEEEECCCTTCBHHHHHHTTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEE
T ss_pred ----eCCEEEEEEecCCCCcHHHHHHHcc----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHee
Confidence 4588999999999999999997643 3689999999999999999999998 9999999999999
Q ss_pred eCCCCcEEEeeecccccccccccccceeccccccccccccCcccC-----CCCCCCccchHHHHHHHHHHHhCCCCCCcc
Q 001974 812 LDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL-----GSEVSTNGDIYSYGILLLEMVTGKKPTDVM 886 (988)
Q Consensus 812 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwslG~vl~elltg~~p~~~~ 886 (988)
++.++.+||+|||+|+........ ......||+.|+|||++. ...++.++|||||||++|||++|+.||...
T Consensus 208 l~~~g~vkL~DFGla~~~~~~~~~---~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~ 284 (437)
T 4aw2_A 208 MDMNGHIRLADFGSCLKLMEDGTV---QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE 284 (437)
T ss_dssp ECTTSCEEECCCTTCEECCTTSCE---ECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred EcCCCCEEEcchhhhhhcccCCCc---ccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999765443221 122356999999999986 567899999999999999999999998632
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCC--CCCHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQD--RMSITNV 964 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~ev 964 (988)
. ............ .. ...+.....+++++.+++.+|+..+|++ ||+++|+
T Consensus 285 ~-----~~~~~~~i~~~~-~~----------------------~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~ei 336 (437)
T 4aw2_A 285 S-----LVETYGKIMNHK-ER----------------------FQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDF 336 (437)
T ss_dssp S-----HHHHHHHHHTHH-HH----------------------CCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHH
T ss_pred C-----hhHHHHhhhhcc-cc----------------------ccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHH
Confidence 1 111111110000 00 0000111246788999999999999988 9999998
Q ss_pred HHH
Q 001974 965 VHE 967 (988)
Q Consensus 965 l~~ 967 (988)
++.
T Consensus 337 l~H 339 (437)
T 4aw2_A 337 KKH 339 (437)
T ss_dssp HTS
T ss_pred hCC
Confidence 763
No 71
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.4e-40 Score=371.89 Aligned_cols=283 Identities=22% Similarity=0.316 Sum_probs=219.2
Q ss_pred cCHHHHHHhhCCCCCCceeccccceeEEEEE-----ECCCCeEEEEEEeecccc-chhHHHHHHHHHHHhc-CCCCceEE
Q 001974 653 VSYESLFKATDGFSSTHLIGMGSFGSVYKGA-----FDQDGTIVAIKVFNLQRH-GASKSFLAECKALKNI-RHRNLVKV 725 (988)
Q Consensus 653 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~-----~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~ 725 (988)
+...++....++|++.+.||+|+||.||+|+ ...+++.||||+++.... ...+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 3455566677899999999999999999999 455678999999975432 3346799999999999 89999999
Q ss_pred EeecccccccCCCceEEEEeeccccchhhhcCCCCCCCch----------------------------------------
Q 001974 726 ITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKD---------------------------------------- 765 (988)
Q Consensus 726 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~---------------------------------------- 765 (988)
++++.. .+...++||||+++|+|.+++.........
T Consensus 92 ~~~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3vhe_A 92 LGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF 167 (359)
T ss_dssp EEEECS----TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred eeeeec----CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence 999754 235689999999999999999765421000
Q ss_pred ---------------hhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEeeeccccccc
Q 001974 766 ---------------VEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQ 830 (988)
Q Consensus 766 ---------------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~ 830 (988)
.......+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 244 (359)
T 3vhe_A 168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY 244 (359)
T ss_dssp ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence 000012389999999999999999999999 99999999999999999999999999998654
Q ss_pred ccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHHHHhhhhhhhh
Q 001974 831 EVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYARTALLDHVIDIV 909 (988)
Q Consensus 831 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (988)
..... .......||+.|+|||++.+..++.++|||||||++|||+| |+.||......+ ........
T Consensus 245 ~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-----~~~~~~~~------ 311 (359)
T 3vhe_A 245 KDPDY--VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-----EFCRRLKE------ 311 (359)
T ss_dssp SCTTC--EEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-----HHHHHHHH------
T ss_pred ccccc--hhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-----HHHHHHHc------
Confidence 43221 12233568899999999999999999999999999999998 999986432110 00000000
Q ss_pred ccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 910 DPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 910 d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
......+..+++++.+++.+||+.||++|||++|+++.|+++.++.
T Consensus 312 --------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 312 --------------------GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp --------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 0011122346778999999999999999999999999999998753
No 72
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.1e-40 Score=360.56 Aligned_cols=262 Identities=25% Similarity=0.378 Sum_probs=206.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++. .++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~ 84 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDE-----EDD 84 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEE-----CSS
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeee-----eCC
Confidence 467999999999999999999999899999999986432 233467899999999999999999999954 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... .++++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 85 ~~~lv~e~~~g~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~ 150 (294)
T 4eqm_A 85 CYYLVMEYIEGPTLSEYIESH-----------GPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTL 150 (294)
T ss_dssp EEEEEEECCCSCBHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred eEEEEEeCCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCE
Confidence 899999999999999998643 2689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||+++........ ......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... .....
T Consensus 151 kl~Dfg~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~-----~~~~~ 222 (294)
T 4eqm_A 151 KIFDFGIAKALSETSLT---QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETA-----VSIAI 222 (294)
T ss_dssp EECCCSSSTTC----------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCH-----HHHHH
T ss_pred EEEeCCCcccccccccc---ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh-----HHHHH
Confidence 99999999865443211 12234689999999999999999999999999999999999999864211 11111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-CHHHHHHHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-SITNVVHELQSVKN 973 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~i~~ 973 (988)
........ .........+|+.+.+++.+||+.||++|| +++++.+.|+++..
T Consensus 223 ~~~~~~~~-----------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 223 KHIQDSVP-----------------------NVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp HHHSSCCC-----------------------CHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred HHhhccCC-----------------------CcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 11111000 000112235778899999999999999998 89999998887643
No 73
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=366.55 Aligned_cols=251 Identities=23% Similarity=0.349 Sum_probs=204.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+++++.++||||+++++++. ..+
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-----~~~ 88 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQ-----DEE 88 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 357999999999999999999999999999999986432 334567889999999999999999999854 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++.... .+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~~~-----------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~v 154 (384)
T 4fr4_A 89 DMFMVVDLLLGGDLRYHLQQNV-----------HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHV 154 (384)
T ss_dssp EEEEEECCCTTEEHHHHHHTTC-----------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCE
T ss_pred EEEEEEecCCCCcHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCE
Confidence 8999999999999999997643 689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCC---CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG---SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
||+|||+++....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ....
T Consensus 155 kL~DFG~a~~~~~~~~-----~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~--~~~~ 227 (384)
T 4fr4_A 155 HITDFNIAAMLPRETQ-----ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST--SSKE 227 (384)
T ss_dssp EECCCTTCEECCTTCC-----BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS--CHHH
T ss_pred EEeccceeeeccCCCc-----eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc--cHHH
Confidence 9999999986544322 223569999999999874 45899999999999999999999998632211 1111
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC-HHHHHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS-ITNVVH 966 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-~~evl~ 966 (988)
.... +.......+..++.++.+++.+||+.||++||+ ++++.+
T Consensus 228 ~~~~----------------------------~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 228 IVHT----------------------------FETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp HHHH----------------------------HHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred HHHH----------------------------HhhcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 1100 011111223456778999999999999999998 666654
No 74
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=3.2e-40 Score=361.10 Aligned_cols=265 Identities=28% Similarity=0.462 Sum_probs=205.6
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
..++|.+.+.||+|+||.||+|++. ..+|+|+++... ....+.+.+|++++++++||||+++++++. .+
T Consensus 34 ~~~~~~~~~~lG~G~~g~Vy~~~~~---~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~ 104 (307)
T 3lb7_A 34 EASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT------KD 104 (307)
T ss_dssp CTTSCCEEEEEEECSSCEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SS
T ss_pred cccceEEEeEecCCCCeEEEEEEEC---CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc------cC
Confidence 4578999999999999999999874 358899887433 234467899999999999999999999853 25
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++.... ..+++.+++.|+.||+.||+|||+. +|+||||||+||++++++.+
T Consensus 105 ~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~ 171 (307)
T 3lb7_A 105 NLAIVTQWCEGSSLYKHLHVQE----------TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTV 171 (307)
T ss_dssp SCEEEEECCSSCBHHHHHHTSC----------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCE
T ss_pred cEEEEEecCCCCcHHHHHHhcc----------cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCE
Confidence 6799999999999999996543 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccC---CCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL---GSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
||+|||+++........ .......||+.|+|||++. +..++.++|||||||++|||++|+.||......+ .
T Consensus 172 kl~DFg~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~----~ 245 (307)
T 3lb7_A 172 KIGDFGLATVKSRWSGS--QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD----Q 245 (307)
T ss_dssp EECCCCSSCC--------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH----H
T ss_pred EEccCCCceeccccccc--ccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHH----H
Confidence 99999999855432211 1122346899999999985 5678899999999999999999999987432111 0
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
.. ...... ...+.+ ......+++++.+++.+||+.||++|||+.|+++.|+.+...+
T Consensus 246 ~~-~~~~~~---~~~~~~-------------------~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 246 II-FMVGRG---YASPDL-------------------SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp HH-HHHHHT---CCCCCS-------------------TTSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred HH-HHHhcC---CCCcch-------------------hhhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 00 000000 000000 0112357888999999999999999999999999999998765
Q ss_pred h
Q 001974 976 L 976 (988)
Q Consensus 976 ~ 976 (988)
+
T Consensus 303 p 303 (307)
T 3lb7_A 303 P 303 (307)
T ss_dssp C
T ss_pred c
Confidence 4
No 75
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.9e-40 Score=362.29 Aligned_cols=251 Identities=22% Similarity=0.270 Sum_probs=204.1
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc------hhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG------ASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
++|++.+.||+|+||.||+|++..+|+.||+|+++..... ..+.+.+|+.++++++||||+++++++. .
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~ 85 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE-----N 85 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----e
Confidence 4689999999999999999999989999999999754321 3467999999999999999999999954 4
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
+...++||||+++++|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 86 ~~~~~lv~e~~~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~ 151 (326)
T 2y0a_A 86 KTDVILILELVAGGELFDFLAEKE-----------SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRN 151 (326)
T ss_dssp SSEEEEEEECCCSCBHHHHHTTSS-----------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSS
T ss_pred CCEEEEEEEcCCCCCHHHHHHhcC-----------CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCC
Confidence 578999999999999999997543 689999999999999999999998 999999999999999887
Q ss_pred ----cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcc
Q 001974 817 ----IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN 892 (988)
Q Consensus 817 ----~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 892 (988)
.+||+|||+++........ ....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 152 ~~~~~~kl~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---- 222 (326)
T 2y0a_A 152 VPKPRIKIIDFGLAHKIDFGNEF-----KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---- 222 (326)
T ss_dssp SSSCCEEECCCTTCEECCTTSCC-----CCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----
T ss_pred CCCCCEEEEECCCCeECCCCCcc-----ccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH----
Confidence 8999999999876443221 234599999999999999999999999999999999999999863211
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...... +.. ....... .....++..+.+++.+||+.||++|||++|+++
T Consensus 223 -~~~~~~-----~~~---~~~~~~~----------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 223 -QETLAN-----VSA---VNYEFED----------------EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp -HHHHHH-----HHH---TCCCCCH----------------HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred -HHHHHH-----HHh---cCCCcCc----------------cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 011000 000 0000000 011245677899999999999999999999986
No 76
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=8.2e-40 Score=357.30 Aligned_cols=271 Identities=17% Similarity=0.180 Sum_probs=215.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ..+.+.+|+.+++++ +|+|++++++++. .+...
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~-----~~~~~ 81 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ-----EGLHN 81 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEE-----ETTEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecC-----CCcee
Confidence 467999999999999999999998899999999986432 335688999999999 8999999999854 45788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc---
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI--- 817 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--- 817 (988)
++||||+ +++|.+++.... .++++.+++.++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 82 ~lv~e~~-~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~ 147 (298)
T 1csn_A 82 VLVIDLL-GPSLEDLLDLCG----------RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNA 147 (298)
T ss_dssp EEEEECC-CCBHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTT
T ss_pred EEEEEec-CCCHHHHHHHhc----------cCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCC
Confidence 9999999 999999997543 3689999999999999999999998 9999999999999987776
Q ss_pred --EEEeeecccccccccccccc---eeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcc
Q 001974 818 --AHVGDFGLARVRQEVSNLTQ---SCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN 892 (988)
Q Consensus 818 --~kL~DfG~a~~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 892 (988)
+||+|||+++.......... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 148 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-- 225 (298)
T 1csn_A 148 NMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAAT-- 225 (298)
T ss_dssp TCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCC--
T ss_pred CeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccc--
Confidence 99999999987654322111 11234569999999999999999999999999999999999999997532221
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
....... +.... ...........+++++.+++.+||+.||++|||+++|++.|+++.
T Consensus 226 ~~~~~~~-~~~~~----------------------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~ 282 (298)
T 1csn_A 226 NKQKYER-IGEKK----------------------QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVL 282 (298)
T ss_dssp HHHHHHH-HHHHH----------------------HHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred cHHHHHH-HHhhc----------------------cCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHH
Confidence 1111100 00000 000000112256788999999999999999999999999999998
Q ss_pred HHhhhh
Q 001974 973 NALLEA 978 (988)
Q Consensus 973 ~~~~~~ 978 (988)
++....
T Consensus 283 ~~~~~~ 288 (298)
T 1csn_A 283 ERLNTT 288 (298)
T ss_dssp HHTTCC
T ss_pred HhcCCC
Confidence 876543
No 77
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-40 Score=366.22 Aligned_cols=248 Identities=25% Similarity=0.355 Sum_probs=203.3
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|.+.+.||+|+||.||+|++..+++.||+|++... .......+.+|+.+++.++||||+++++++. .++
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 82 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-----TPT 82 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence 46799999999999999999999999999999998643 2233467899999999999999999999964 447
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+ +|+|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||++++++.+
T Consensus 83 ~~~lv~E~~-~g~l~~~l~~~-----------~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~ 147 (336)
T 3h4j_B 83 DIVMVIEYA-GGELFDYIVEK-----------KRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNV 147 (336)
T ss_dssp EEEEEECCC-CEEHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCE
T ss_pred EEEEEEECC-CCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCE
Confidence 899999999 78999888543 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||++......... ....||+.|+|||++.+..+ +.++||||+||++|+|++|+.||+......
T Consensus 148 kl~DFG~s~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~------- 215 (336)
T 3h4j_B 148 KIADFGLSNIMTDGNFL-----KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN------- 215 (336)
T ss_dssp EECCSSCTBTTTTSBTT-----CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT-------
T ss_pred EEEEeccceeccCCccc-----ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH-------
Confidence 99999999865543222 23459999999999988776 689999999999999999999987421110
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
...... ......+..+++++.+++.+||+.||++|||++|+++.
T Consensus 216 ----------~~~~i~----------------~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 216 ----------LFKKVN----------------SCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp ----------CBCCCC----------------SSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred ----------HHHHHH----------------cCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 000000 00011223467789999999999999999999999864
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.4e-39 Score=371.62 Aligned_cols=368 Identities=18% Similarity=0.194 Sum_probs=289.1
Q ss_pred CCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCc
Q 001974 42 KGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIP 121 (988)
Q Consensus 42 ~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~ 121 (988)
.+..+..+.+++.+++|++|+|++|+|++. | .|..+++|++|+|++|++++ +| ++.+++|++|+|++|+|++. +
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e
Confidence 344556667888899999999999999964 5 68899999999999999995 44 88899999999999999864 3
Q ss_pred ccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccC
Q 001974 122 FEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSL 201 (988)
Q Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 201 (988)
|.++++|++|++++|++++ ++ ++.+++|++|++++|++++. .++++++|++|++++|+..+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 8889999999999999986 44 88999999999999999864 3888999999999999554444 4788899
Q ss_pred ccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecc
Q 001974 202 LANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVA 281 (988)
Q Consensus 202 L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~ 281 (988)
|++|++++|+++ .+| +..+++|+.|++++|++++. .+..+++|+.|++++|+++++ | +..+++|+.|+++
T Consensus 172 L~~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 172 LTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCS 241 (457)
T ss_dssp CCEEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECC
T ss_pred CCEEECCCCccc-eec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEee
Confidence 999999999998 566 45788899999999998865 478888899999999988874 3 7788888999999
Q ss_pred cccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeC
Q 001974 282 YNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGG 361 (988)
Q Consensus 282 ~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 361 (988)
+|++++.+. ..+++|+.|++++|+ |+.|++++|.+.+.+| +..+++|+.|++++
T Consensus 242 ~N~l~~~~~---------~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 242 VNPLTELDV---------STLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTH 295 (457)
T ss_dssp SSCCSCCCC---------TTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTT
T ss_pred CCcCCCcCH---------HHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEECCC
Confidence 888887542 356778888877764 4567788888776666 46778888888888
Q ss_pred ccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCc
Q 001974 362 NQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIP 441 (988)
Q Consensus 362 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 441 (988)
|.+.+.+|. ...+|+.|++++| ++|++|+|++|++++. + ++.+++|+.|++++|++++ +
T Consensus 296 n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l- 354 (457)
T 3bz5_A 296 NTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-F- 354 (457)
T ss_dssp CTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-C-
T ss_pred Ccccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-c-
Confidence 887766664 3355666655554 6788888888888874 3 8888888888888888874 3
Q ss_pred hhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccc
Q 001974 442 EEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLG 494 (988)
Q Consensus 442 ~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 494 (988)
+.+ ..|++++|.++|. +.+..|..+++++|+++|.+|..+.
T Consensus 355 ------~~L-~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 355 ------SSV-GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp ------TTG-GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ------ccc-ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 334 5677888888765 3556677788888888888876654
No 79
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=3.5e-40 Score=354.16 Aligned_cols=259 Identities=25% Similarity=0.423 Sum_probs=209.9
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++. +++.||+|+++.... ..+.+.+|++++++++||||+++++++. .++..
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 78 (268)
T 3sxs_A 6 KREEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCS-----KEYPI 78 (268)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSSE
T ss_pred chhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCce
Confidence 3567999999999999999999886 678899999975433 3467999999999999999999999954 45788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 79 ~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l 145 (268)
T 3sxs_A 79 YIVTEYISNGCLLNYLRSHG----------KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKV 145 (268)
T ss_dssp EEEEECCTTCBHHHHHHHHG----------GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEE
T ss_pred EEEEEccCCCcHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEE
Confidence 99999999999999986432 3689999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||.+........ ....+..+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....
T Consensus 146 ~Dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~ 217 (268)
T 3sxs_A 146 SDFGMTRYVLDDQY---VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS-----EVVLK 217 (268)
T ss_dssp CCTTCEEECCTTCE---EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHH
T ss_pred ccCccceecchhhh---hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH-----HHHHH
Confidence 99999986544322 12233456788999999998899999999999999999999 99998632111 11000
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
+.. ......+..+++++.+++.+||+.||++|||++|+++.|++++++
T Consensus 218 -----~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 218 -----VSQ----------------------GHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp -----HHT----------------------TCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred -----HHc----------------------CCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 000 000111224567899999999999999999999999999987654
No 80
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=5.7e-40 Score=368.83 Aligned_cols=251 Identities=22% Similarity=0.334 Sum_probs=201.3
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhc-CCCCceEEEeecccccccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 736 (988)
..++|++.++||+|+||+||+|+++.+++.||+|+++... ....+.+..|..++.++ +||||+++++++ ..
T Consensus 50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~ 124 (396)
T 4dc2_A 50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QT 124 (396)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE-----EC
T ss_pred ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE-----EE
Confidence 3467999999999999999999999999999999997542 23345688999999887 899999999985 44
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
++..++||||+++|+|.+++... ..+++..++.++.||+.||+|||+. +||||||||+|||++.++
T Consensus 125 ~~~~~lV~E~~~gg~L~~~l~~~-----------~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g 190 (396)
T 4dc2_A 125 ESRLFFVIEYVNGGDLMFHMQRQ-----------RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEG 190 (396)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTS
T ss_pred CCEEEEEEEcCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCC
Confidence 58899999999999999988643 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCc---ch
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL---NL 893 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~---~~ 893 (988)
.+||+|||+|+....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......+. ..
T Consensus 191 ~ikL~DFGla~~~~~~~~----~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~ 266 (396)
T 4dc2_A 191 HIKLTDYGMCKEGLRPGD----TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 266 (396)
T ss_dssp CEEECCCTTCBCCCCTTC----CBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CC
T ss_pred CEEEeecceeeecccCCC----ccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhh
Confidence 999999999985322211 12335699999999999999999999999999999999999999964321110 00
Q ss_pred HHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCH
Q 001974 894 HNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSI 961 (988)
Q Consensus 894 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 961 (988)
.... .+.+.......+..++.++.+++.+||+.||++||++
T Consensus 267 ~~~~---------------------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 267 EDYL---------------------------FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp HHHH---------------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred HHHH---------------------------HHHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 0000 0111111222334567889999999999999999996
No 81
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=368.66 Aligned_cols=250 Identities=23% Similarity=0.311 Sum_probs=200.3
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 736 (988)
..++|++.+.||+|+||+||+|+++.+++.||+|+++.. .....+.+..|..+++.+ +||||+++++++ ..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~ 95 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF-----QT 95 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE-----EC
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE-----Ee
Confidence 457899999999999999999999999999999999743 223446788999999988 799999999995 44
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
++..++||||+++|+|.+++... ..+++.+++.++.||+.||+|||++ +|+||||||+|||++.++
T Consensus 96 ~~~~~lv~E~~~gg~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g 161 (353)
T 3txo_A 96 PDRLFFVMEFVNGGDLMFHIQKS-----------RRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEG 161 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTS
T ss_pred CCEEEEEEeCCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCC
Confidence 57899999999999999998643 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+|+....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...
T Consensus 162 ~ikL~DFG~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~ 232 (353)
T 3txo_A 162 HCKLADFGMCKEGICNGV----TTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE-----DDL 232 (353)
T ss_dssp CEEECCCTTCBCSCC-------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred CEEEccccceeecccCCc----cccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH-----HHH
Confidence 999999999975332211 12235699999999999988899999999999999999999999863211 111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCH------HHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSI------TNVVH 966 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~------~evl~ 966 (988)
.... .......+...+.++.+++.+||+.||++||++ +|+++
T Consensus 233 ~~~i----------------------------~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 233 FEAI----------------------------LNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp HHHH----------------------------HHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred HHHH----------------------------HcCCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 1110 011112233466789999999999999999998 66664
No 82
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2.9e-40 Score=365.32 Aligned_cols=261 Identities=23% Similarity=0.413 Sum_probs=203.7
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeE----EEEEEeecc-ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTI----VAIKVFNLQ-RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
.++|++.+.||+|+||+||+|++..+++. ||+|.++.. .....+.+.+|+.++++++||||++++++|..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 88 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES-----
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----
Confidence 35689999999999999999999777765 577777533 23445789999999999999999999999753
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
+..++|+||+++|+|.+++.... ..+++..++.|+.||+.||+|||+. +|+||||||+||+++.++
T Consensus 89 -~~~~~v~e~~~~g~L~~~l~~~~----------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~ 154 (327)
T 3poz_A 89 -STVQLITQLMPFGCLLDYVREHK----------DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQ 154 (327)
T ss_dssp -SSEEEEEECCTTCBHHHHHHHST----------TSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETT
T ss_pred -CCeEEEEEecCCCcHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCC
Confidence 34789999999999999997543 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+|+........ .......+|..|+|||++.+..++.++|||||||++|||+| |+.||...... ....
T Consensus 155 ~~kl~Dfg~a~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~ 230 (327)
T 3poz_A 155 HVKITDFGLAKLLGAEEKE--YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISS 230 (327)
T ss_dssp EEEECCTTHHHHHTTTCC---------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHH
T ss_pred CEEEccCcceeEccCCccc--ccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHH
Confidence 9999999999876543321 11223457889999999999999999999999999999999 99998743211 1100
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
.+.. ......+..++.++.+++.+||+.||++|||++|+++.|+++....
T Consensus 231 ------------~~~~------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~~ 280 (327)
T 3poz_A 231 ------------ILEK------------------GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp ------------HHHT------------------TCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTSH
T ss_pred ------------HHHc------------------CCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhhh
Confidence 0000 0011223356778999999999999999999999999999987643
No 83
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=8.3e-40 Score=367.82 Aligned_cols=253 Identities=19% Similarity=0.252 Sum_probs=206.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|++.+.||+|+||.||+|.+..+|+.||+|++..........+.+|++++++++||||+++++++. +++..+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE-----DKYEMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEE-----CSSEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEE-----eCCEEE
Confidence 467999999999999999999999999999999997655555568899999999999999999999954 458899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC--CCcEE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN--DMIAH 819 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~k 819 (988)
+||||+++|+|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++. ++.+|
T Consensus 125 lv~E~~~gg~L~~~l~~~~----------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vk 191 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAED----------YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVK 191 (387)
T ss_dssp EEEECCCCCBHHHHTTCTT----------CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEE
T ss_pred EEEEcCCCCcHHHHHHhhc----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceE
Confidence 9999999999999997653 2689999999999999999999998 9999999999999974 57899
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||+++........ ....||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......
T Consensus 192 L~DFG~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~-----~~~~~~ 261 (387)
T 1kob_A 192 IIDFGLATKLNPDEIV-----KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD-----LETLQN 261 (387)
T ss_dssp ECCCTTCEECCTTSCE-----EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHH
T ss_pred EEecccceecCCCcce-----eeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH-----HHHHHH
Confidence 9999999876543221 123589999999999999999999999999999999999999863211 111110
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+.. ....... .....+++++.+++.+||+.||++|||++|+++
T Consensus 262 -----i~~---~~~~~~~----------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 262 -----VKR---CDWEFDE----------------DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp -----HHH---CCCCCCS----------------STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred -----HHh---CCCCCCc----------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 000 0000000 111246778999999999999999999999986
No 84
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=3.7e-40 Score=357.04 Aligned_cols=262 Identities=25% Similarity=0.422 Sum_probs=210.1
Q ss_pred HHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 658 LFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 658 l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
+....++|++.+.||+|+||.||+|.+. +++.||+|+++.... ..+++.+|++++++++||||+++++++. .+
T Consensus 19 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~ 91 (283)
T 3gen_A 19 WEIDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCT-----KQ 91 (283)
T ss_dssp TBCCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SS
T ss_pred ccCCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEe-----cC
Confidence 3445678999999999999999999986 788899999975433 3477999999999999999999999954 45
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 92 ~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~ 158 (283)
T 3gen_A 92 RPIFIITEYMANGCLLNYLREMR----------HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGV 158 (283)
T ss_dssp SSEEEEECCCTTCBHHHHHHCGG----------GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSC
T ss_pred CCeEEEEeccCCCcHHHHHHHhc----------cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCC
Confidence 78999999999999999997533 3689999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||+| |+.||...... ..
T Consensus 159 ~kl~Dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~-----~~ 230 (283)
T 3gen_A 159 VKVSDFGLSRYVLDDEY---TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS-----ET 230 (283)
T ss_dssp EEECSTTGGGGBCCHHH---HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HH
T ss_pred EEEcccccccccccccc---ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh-----HH
Confidence 99999999986543221 11223457788999999998899999999999999999998 99998642111 00
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
. ..+.... ....+..+++.+.+++.+||+.||++|||++|+++.|+++.++
T Consensus 231 ~-----~~~~~~~----------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 231 A-----EHIAQGL----------------------RLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp H-----HHHHTTC----------------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred H-----HHHhccc----------------------CCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 0 0011000 0111234567899999999999999999999999999998764
No 85
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=9.2e-40 Score=354.72 Aligned_cols=254 Identities=26% Similarity=0.422 Sum_probs=203.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccch-------hHHHHHHHHHHHhcCCCCceEEEeecccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGA-------SKSFLAECKALKNIRHRNLVKVITSCSSIDF 734 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 734 (988)
.++|++.+.||+|+||+||+|++..+++.||+|++....... .+.+.+|++++++++||||+++++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--- 94 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN--- 94 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT---
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC---
Confidence 467999999999999999999999899999999986433221 1678999999999999999999999643
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC--eEeccCCCCCeee
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP--VLHCDLKPGNVLL 812 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll 812 (988)
..++||||+++|+|.+++.... ..+++..++.++.|++.||+|||+. + |+||||||+||++
T Consensus 95 ----~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~ 157 (287)
T 4f0f_A 95 ----PPRMVMEFVPCGDLYHRLLDKA----------HPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFL 157 (287)
T ss_dssp ----TTEEEEECCTTCBHHHHHHCTT----------SCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEE
T ss_pred ----CCeEEEEecCCCCHHHHHhccc----------CCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEE
Confidence 2369999999999998886544 3689999999999999999999998 8 9999999999999
Q ss_pred CCCCc-----EEEeeecccccccccccccceeccccccccccccCcccC--CCCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 813 DNDMI-----AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL--GSEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 813 ~~~~~-----~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
+.++. +||+|||+++..... .....||+.|+|||++. ...++.++||||+||++|||++|+.||..
T Consensus 158 ~~~~~~~~~~~kl~Dfg~~~~~~~~-------~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 230 (287)
T 4f0f_A 158 QSLDENAPVCAKVADFGLSQQSVHS-------VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDE 230 (287)
T ss_dssp SCCCTTCSCCEEECCCTTCBCCSSC-------EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred eccCCCCceeEEeCCCCcccccccc-------ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcc
Confidence 88776 999999999754321 12346899999999984 45678999999999999999999999874
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH
Q 001974 886 MFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVV 965 (988)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 965 (988)
....+.. ........ ......+..+++++.+++.+||+.||++|||++|++
T Consensus 231 ~~~~~~~---~~~~~~~~--------------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 281 (287)
T 4f0f_A 231 YSYGKIK---FINMIREE--------------------------GLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIV 281 (287)
T ss_dssp CCCCHHH---HHHHHHHS--------------------------CCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccccHHH---HHHHHhcc--------------------------CCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 3222110 01000000 001112335778899999999999999999999999
Q ss_pred HHHHHH
Q 001974 966 HELQSV 971 (988)
Q Consensus 966 ~~L~~i 971 (988)
+.|+++
T Consensus 282 ~~L~~l 287 (287)
T 4f0f_A 282 KELSEL 287 (287)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 999763
No 86
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=9.5e-40 Score=358.17 Aligned_cols=246 Identities=22% Similarity=0.287 Sum_probs=203.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|+...+|+.||+|+++... ....+.+.+|+.+++.++||||+++++++. +.+
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~-----~~~ 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQ-----DAQ 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEE-----CSS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEE-----eCC
Confidence 467999999999999999999999999999999997432 234467889999999999999999999854 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++.... .+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~~~-----------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~ 145 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRKSQ-----------RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHI 145 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHHTS-----------SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCE
T ss_pred EEEEEEeCCCCCCHHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCE
Confidence 8999999999999999996542 689999999999999999999998 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.... ......
T Consensus 146 kL~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~ 213 (318)
T 1fot_A 146 KITDFGFAKYVPDV-------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN-----TMKTYE 213 (318)
T ss_dssp EECCCSSCEECSSC-------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-----HHHHHH
T ss_pred EEeecCcceecCCc-------cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC-----HHHHHH
Confidence 99999999865432 123469999999999999999999999999999999999999986321 111111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-----CHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-----SITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 966 (988)
... ......+...+.++.+++.+||+.||++|| +++|+++
T Consensus 214 ~i~----------------------------~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 214 KIL----------------------------NAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHH----------------------------HCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHH----------------------------hCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 000 001112234667899999999999999999 8888874
No 87
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=8.3e-40 Score=377.23 Aligned_cols=255 Identities=27% Similarity=0.424 Sum_probs=208.9
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|.+ .++.||||+++... ..+.+.+|++++++++||||+++++++.. .+...
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~ 262 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGL 262 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC----TTSCE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEe--cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc----CCCce
Confidence 456788999999999999999998 57899999997543 45789999999999999999999999653 23578
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++|+|.+++..... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||
T Consensus 263 ~iv~e~~~~g~L~~~l~~~~~---------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl 330 (450)
T 1k9a_A 263 YIVTEYMAKGSLVDYLRSRGR---------SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKV 330 (450)
T ss_dssp EEEEECCTTCBHHHHHHHHCT---------TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEE
T ss_pred EEEEEecCCCcHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEE
Confidence 999999999999999975431 2478999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+++...... ....++..|+|||++.+..++.++|||||||++|||+| |+.||......+ ....
T Consensus 331 ~DfG~a~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~--- 398 (450)
T 1k9a_A 331 SDFGLTKEASSTQ-------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPR--- 398 (450)
T ss_dssp CCCTTCEECC-------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHH---
T ss_pred eeCCCcccccccc-------cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHH---
Confidence 9999998543211 11247889999999999999999999999999999999 999987432211 1000
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
+.. ......+..+++++.++|.+||+.||++|||++|+++.|+++.+.
T Consensus 399 -----i~~----------------------~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 399 -----VEK----------------------GYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp -----HHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred -----HHc----------------------CCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 000 001122346788999999999999999999999999999999765
No 88
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=1.1e-39 Score=361.60 Aligned_cols=268 Identities=19% Similarity=0.210 Sum_probs=212.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||.||+|++..+++.||||++.... ..+.+.+|+++++++ +||||+++++++. .++..
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~-----~~~~~ 80 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGP-----CGKYN 80 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEE-----ETTEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEe-----cCCcc
Confidence 467999999999999999999998899999999986543 235688999999999 9999999999854 34788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc---
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI--- 817 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--- 817 (988)
++||||+ +++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~----------~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~ 146 (330)
T 2izr_A 81 AMVLELL-GPSLEDLFDLCD----------RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQ 146 (330)
T ss_dssp EEEEECC-CCBHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCT
T ss_pred EEEEEeC-CCCHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCC
Confidence 9999999 999999987542 3689999999999999999999999 9999999999999998887
Q ss_pred --EEEeeecccccccccccccc---eeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcc
Q 001974 818 --AHVGDFGLARVRQEVSNLTQ---SCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN 892 (988)
Q Consensus 818 --~kL~DfG~a~~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 892 (988)
+||+|||+++.......... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...... .
T Consensus 147 ~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~--~ 224 (330)
T 2izr_A 147 QVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD--T 224 (330)
T ss_dssp TSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS--S
T ss_pred ceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc--c
Confidence 99999999986544322111 1123457999999999999999999999999999999999999999753222 1
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
.............. .........+| ++.+++.+||+.||.+||++++|.+.|+++.
T Consensus 225 ~~~~~~~i~~~~~~-----------------------~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~ 280 (330)
T 2izr_A 225 LKERYQKIGDTKRA-----------------------TPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLF 280 (330)
T ss_dssp HHHHHHHHHHHHHH-----------------------SCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcc-----------------------CCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 11111110000000 00000011345 8999999999999999999999999999988
Q ss_pred HHhh
Q 001974 973 NALL 976 (988)
Q Consensus 973 ~~~~ 976 (988)
++..
T Consensus 281 ~~~~ 284 (330)
T 2izr_A 281 DRKG 284 (330)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7653
No 89
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=354.20 Aligned_cols=252 Identities=22% Similarity=0.326 Sum_probs=198.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--------------------------chhHHHHHHHHHHH
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--------------------------GASKSFLAECKALK 715 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 715 (988)
.++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 4689999999999999999999998999999999864321 12356889999999
Q ss_pred hcCCCCceEEEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcC
Q 001974 716 NIRHRNLVKVITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHH 795 (988)
Q Consensus 716 ~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~ 795 (988)
+++||||+++++++... .++..++||||+++++|.+++.. ..+++.+++.++.||+.||+|||+.
T Consensus 92 ~l~h~~iv~~~~~~~~~---~~~~~~lv~e~~~~~~l~~~~~~------------~~~~~~~~~~~~~qi~~~l~~lH~~ 156 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDP---NEDHLYMVFELVNQGPVMEVPTL------------KPLSEDQARFYFQDLIKGIEYLHYQ 156 (298)
T ss_dssp TCCCTTBCCEEEEEECS---SSSEEEEEEECCTTCBSCCSSCS------------SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCCCCeEEEEEEcC---CCCEEEEEEecCCCCcHHHHhhc------------CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999997532 34778999999999999887543 2589999999999999999999999
Q ss_pred CCCCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCC---CCCccchHHHHHH
Q 001974 796 CQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSE---VSTNGDIYSYGIL 872 (988)
Q Consensus 796 ~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDvwslG~v 872 (988)
+|+||||||+||+++.++.+||+|||+++........ .....||+.|+|||++.+.. ++.++|||||||+
T Consensus 157 ---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~ 229 (298)
T 2zv2_A 157 ---KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDAL----LSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVT 229 (298)
T ss_dssp ---TEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCE----ECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHH
T ss_pred ---CeeccCCCHHHEEECCCCCEEEecCCCcccccccccc----ccCCcCCccccChhhhccCCCCCCCchhhhHhHHHH
Confidence 9999999999999999999999999999865443211 22346999999999988765 4778999999999
Q ss_pred HHHHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccC
Q 001974 873 LLEMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSV 952 (988)
Q Consensus 873 l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 952 (988)
+|||++|+.||... ........ +... .. .......+++++.+++.+||+
T Consensus 230 l~~l~~g~~pf~~~-----~~~~~~~~-~~~~-------~~------------------~~~~~~~~~~~l~~li~~~l~ 278 (298)
T 2zv2_A 230 LYCFVFGQCPFMDE-----RIMCLHSK-IKSQ-------AL------------------EFPDQPDIAEDLKDLITRMLD 278 (298)
T ss_dssp HHHHHHSSCSSCCS-----SHHHHHHH-HHHC-------CC------------------CCCSSSCCCHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCc-----cHHHHHHH-Hhcc-------cC------------------CCCCccccCHHHHHHHHHHhh
Confidence 99999999998632 11111100 0000 00 001123567889999999999
Q ss_pred cCCCCCCCHHHHHH
Q 001974 953 ESPQDRMSITNVVH 966 (988)
Q Consensus 953 ~dP~~RPs~~evl~ 966 (988)
.||++|||++|+++
T Consensus 279 ~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 279 KNPESRIVVPEIKL 292 (298)
T ss_dssp SCTTTSCCHHHHTT
T ss_pred cChhhCCCHHHHhc
Confidence 99999999999875
No 90
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=8.8e-40 Score=365.66 Aligned_cols=253 Identities=21% Similarity=0.294 Sum_probs=204.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|.+..+|+.||+|++..... ...+.+.+|+.++++++||||+++++++. +++.
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~ 102 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF 102 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCCE
Confidence 4579999999999999999999999999999999975432 33467889999999999999999999954 4578
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC---
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM--- 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~--- 816 (988)
.++||||+++|+|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 103 ~~lv~e~~~gg~L~~~l~~~~-----------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~ 168 (362)
T 2bdw_A 103 HYLVFDLVTGGELFEDIVARE-----------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGA 168 (362)
T ss_dssp EEEEECCCCSCBHHHHHTTCS-----------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTC
T ss_pred EEEEEecCCCCCHHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCC
Confidence 899999999999999987543 589999999999999999999999 999999999999998654
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||++........ .....||+.|+|||++.+..++.++|||||||++|||++|+.||.... ....
T Consensus 169 ~~kl~DfG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~-----~~~~ 238 (362)
T 2bdw_A 169 AVKLADFGLAIEVNDSEA-----WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED-----QHRL 238 (362)
T ss_dssp CEEECCCTTCBCCTTCCS-----CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHH
T ss_pred CEEEeecCcceEecCCcc-----cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC-----HHHH
Confidence 599999999986654322 123469999999999999999999999999999999999999986321 1111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
... +.. ......... ...+++++.+++.+||+.||++|||++|+++.
T Consensus 239 ~~~-----i~~---~~~~~~~~~----------------~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 239 YAQ-----IKA---GAYDYPSPE----------------WDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHH-----HHH---TCCCCCTTG----------------GGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHH-----HHh---CCCCCCccc----------------ccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 110 000 000000011 12467789999999999999999999998754
No 91
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.1e-40 Score=369.60 Aligned_cols=268 Identities=23% Similarity=0.382 Sum_probs=209.0
Q ss_pred hCCCCCCceeccccceeEEEEEE-----CCCCeEEEEEEeecc-ccchhHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAF-----DQDGTIVAIKVFNLQ-RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~-----~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
.++|++.+.||+|+||+||+|++ ..+++.||||+++.. .......+.+|+.++++++||||+++++++.
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~----- 144 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 144 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe-----
Confidence 35688999999999999999994 446789999998643 2334457889999999999999999999954
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
.+...++||||+++|+|.+++........ ....+++.+++.++.||+.||+|||++ +|+||||||+|||++.+
T Consensus 145 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~----~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~ 217 (367)
T 3l9p_A 145 QSLPRFILLELMAGGDLKSFLRETRPRPS----QPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCP 217 (367)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHHSCCSS----SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCS
T ss_pred cCCCCEEEEEeCCCCCHHHHHHhhccccC----ccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecC
Confidence 34778999999999999999975432110 013589999999999999999999999 99999999999999955
Q ss_pred C---cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCc
Q 001974 816 M---IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDL 891 (988)
Q Consensus 816 ~---~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~ 891 (988)
+ .+||+|||+++......... ......||+.|+|||++.+..++.++|||||||++|||++ |..||.....
T Consensus 218 ~~~~~~kL~DFG~a~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--- 292 (367)
T 3l9p_A 218 GPGRVAKIGDFGMARDIYRAGYYR--KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--- 292 (367)
T ss_dssp STTCCEEECCCHHHHHHHHHSSCT--TCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---
T ss_pred CCCceEEECCCccccccccccccc--cCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH---
Confidence 5 59999999998654322211 1122457899999999998999999999999999999998 9999863211
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSV 971 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 971 (988)
...... +.. ......+..++.++.+++.+||+.||++|||++|+++.|+.+
T Consensus 293 --~~~~~~-----i~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~ 343 (367)
T 3l9p_A 293 --QEVLEF-----VTS----------------------GGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343 (367)
T ss_dssp --HHHHHH-----HHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --HHHHHH-----HHc----------------------CCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 111100 000 001112335778899999999999999999999999999998
Q ss_pred HHHh
Q 001974 972 KNAL 975 (988)
Q Consensus 972 ~~~~ 975 (988)
.+..
T Consensus 344 ~~~~ 347 (367)
T 3l9p_A 344 TQDP 347 (367)
T ss_dssp HHCH
T ss_pred hhCh
Confidence 7653
No 92
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=4.3e-40 Score=364.38 Aligned_cols=250 Identities=22% Similarity=0.329 Sum_probs=203.0
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhc-CCCCceEEEeeccccccc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~ 735 (988)
...++|++.+.||+|+||.||+|+++.+|+.||+|+++... ....+.+..|..++..+ +||||+++++++.
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~----- 88 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ----- 88 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEE-----
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEE-----
Confidence 45678999999999999999999999999999999997432 23446788899999887 9999999999854
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
+++..++||||+++|+|.+++... ..+++.++..++.||+.||+|||++ +|+||||||+||+++.+
T Consensus 89 ~~~~~~lv~E~~~gg~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~ 154 (345)
T 1xjd_A 89 TKENLFFVMEYLNGGDLMYHIQSC-----------HKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKD 154 (345)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTT
T ss_pred eCCEEEEEEeCCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCC
Confidence 457899999999999999998643 3689999999999999999999999 99999999999999999
Q ss_pred CcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 816 MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 816 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
+.+||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.... ...
T Consensus 155 g~vkL~DFG~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-----~~~ 225 (345)
T 1xjd_A 155 GHIKIADFGMCKENMLGDA----KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD-----EEE 225 (345)
T ss_dssp SCEEECCCTTCBCCCCTTC----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHH
T ss_pred CCEEEeEChhhhhcccCCC----cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC-----HHH
Confidence 9999999999975432211 1223569999999999999999999999999999999999999986321 111
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHH-HHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSIT-NVV 965 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~-evl 965 (988)
.... +. ......+..++.++.+++.+||+.||++||++. |++
T Consensus 226 ~~~~-----i~-----------------------~~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 226 LFHS-----IR-----------------------MDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHH-----HH-----------------------HCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHH-----HH-----------------------hCCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 1100 00 001112234667899999999999999999997 664
No 93
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=8.8e-40 Score=353.55 Aligned_cols=261 Identities=23% Similarity=0.374 Sum_probs=200.4
Q ss_pred hhCCCCCCceeccccceeEEEEEECCC---CeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQD---GTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
..++|++.+.||+|+||.||+|.+..+ +..||+|+++... ....+.+.+|+.++++++||||+++++++.
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------ 86 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 86 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc------
Confidence 356789999999999999999998543 4579999986433 234467899999999999999999999853
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
++..++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 87 ~~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~ 153 (281)
T 1mp8_A 87 ENPVWIIMELCTLGELRSFLQVRK----------YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSND 153 (281)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHTT----------TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETT
T ss_pred cCccEEEEecCCCCCHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCC
Confidence 256799999999999999996543 2589999999999999999999998 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+++......... .....+++.|+|||++.+..++.++||||||+++|||++ |..||......+ ...
T Consensus 154 ~~kl~Dfg~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--~~~ 228 (281)
T 1mp8_A 154 CVKLGDFGLSRYMEDSTYYK---ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIG 228 (281)
T ss_dssp EEEECC----------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHH
T ss_pred CEEECccccccccCcccccc---cccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--HHH
Confidence 99999999998764432211 122346789999999988899999999999999999997 999987432211 000
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
. +. . ......+..+++++.+++.+||+.||++|||++|+++.|+++.++.
T Consensus 229 ~--------i~---~-------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 229 R--------IE---N-------------------GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp H--------HH---T-------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred H--------HH---c-------------------CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 0 00 0 0001123357788999999999999999999999999999997754
No 94
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.2e-40 Score=363.70 Aligned_cols=282 Identities=22% Similarity=0.312 Sum_probs=215.5
Q ss_pred hCCCCCCceeccccceeEEEEEE----CCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAF----DQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|++ ..+++.||||++........+.+.+|++++++++||||+++++++.. .+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 98 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGR 98 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSS
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCC
Confidence 36799999999999999999994 56889999999987666666789999999999999999999998653 245
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~ 165 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHR----------ARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAH 165 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHG----------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTE
T ss_pred ceEEEEEeecCCCCHHHHHHhcc----------cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCC
Confidence 67899999999999999986432 3689999999999999999999998 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||+++........ ........||..|+|||++.+..++.++||||||+++|+|++|+.||...... ..
T Consensus 166 ~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~------~~ 238 (327)
T 3lxl_A 166 VKIADFGLAKLLPLDKDY-YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE------FL 238 (327)
T ss_dssp EEECCGGGCEECCTTCSE-EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH------HH
T ss_pred EEEcccccceecccCCcc-ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch------hh
Confidence 999999999876543321 11222345888899999999888999999999999999999999997632110 00
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
..... ..+...................+..+++++.+++.+||+.||++|||++|+++.|+.+......
T Consensus 239 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~ 307 (327)
T 3lxl_A 239 RMMGC-----------ERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRG 307 (327)
T ss_dssp HHCC---------------CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC------
T ss_pred hhccc-----------ccccccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcC
Confidence 00000 0000000000011111112233456788999999999999999999999999999998765544
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.1e-39 Score=368.44 Aligned_cols=365 Identities=19% Similarity=0.167 Sum_probs=235.2
Q ss_pred cccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCC
Q 001974 67 SIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPP 146 (988)
Q Consensus 67 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (988)
.+.+..+..++.+++|++|+|++|.+++ +| .|+.+++|++|+|++|+|++. | +..+++|++|++++|++++. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence 3343445566777777777777777774 34 577777777777777777753 3 66777777777777777643 2
Q ss_pred cccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCC
Q 001974 147 FIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPH 226 (988)
Q Consensus 147 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~ 226 (988)
|+++++|++|++++|++++. + ++.+++|++|++++|+++++ .+..+++|++|++++|+..+.+
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---------- 164 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---------- 164 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC----------
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc----------
Confidence 66677777777777776642 2 66666666666666666643 2455555555555555332222
Q ss_pred CcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCc
Q 001974 227 LRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLR 306 (988)
Q Consensus 227 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~ 306 (988)
.+..+++|+.|++++|++++. + +..+++|+.|++++|.++.+. +..++
T Consensus 165 -----------------~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~---------l~~l~--- 212 (457)
T 3bz5_A 165 -----------------DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD---------LNQNI--- 212 (457)
T ss_dssp -----------------CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC---------CTTCT---
T ss_pred -----------------ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec---------cccCC---
Confidence 123334444444444444432 1 344444555555555444321 22233
Q ss_pred EEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccc
Q 001974 307 TLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDN 386 (988)
Q Consensus 307 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 386 (988)
+|+.|++++|++++ +| +..+++|+.|++++|++++.. +..+++|+.|++++|
T Consensus 213 ----------------------~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 213 ----------------------QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT 264 (457)
T ss_dssp ----------------------TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC
T ss_pred ----------------------CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC
Confidence 35555555555553 33 566667777777777777532 445667777777665
Q ss_pred cCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCc
Q 001974 387 QLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIP 466 (988)
Q Consensus 387 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p 466 (988)
+ |+.|++++|.+.+.+| ++.+++|+.|++++|.+.|.+|.. ...+ +.|++++|
T Consensus 265 ~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L-~~L~l~~~------- 317 (457)
T 3bz5_A 265 D--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGI-TELDLSQN------- 317 (457)
T ss_dssp C--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCC-SCCCCTTC-------
T ss_pred C--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcc-eEechhhc-------
Confidence 3 4567777887777666 567788888888888887777753 3444 55666555
Q ss_pred cccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCCCC
Q 001974 467 TKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSL 546 (988)
Q Consensus 467 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L 546 (988)
++|+.|++++|+|++ ++ ++.+++|+.|++++|+|++ ++.|..|++++|+++|. + .+..|
T Consensus 318 ------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-~---~~~~l 376 (457)
T 3bz5_A 318 ------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-G---QTITM 376 (457)
T ss_dssp ------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-E---EEEEC
T ss_pred ------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-c---eeeec
Confidence 578999999999997 43 8889999999999999886 25677788999999887 2 34467
Q ss_pred cEEeCCCCcCcccCCCC
Q 001974 547 EYLNLSFNDLEGEVPTK 563 (988)
Q Consensus 547 ~~l~l~~N~l~~~~p~~ 563 (988)
..++|++|+++|.+|..
T Consensus 377 ~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCBCCBTTBEEEECCTT
T ss_pred CccccccCcEEEEcChh
Confidence 88899999999999864
No 96
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=2.5e-39 Score=353.16 Aligned_cols=273 Identities=22% Similarity=0.292 Sum_probs=212.7
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++..+++.||||++.... ....+.+|+++++.++|++++..++++.. .++..
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~ 80 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYN 80 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecC----CCCce
Confidence 4578999999999999999999998899999999875433 23468899999999998888877776533 45788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee---CCCCc
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL---DNDMI 817 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~ 817 (988)
++||||+ +++|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||++ +.++.
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~----------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~ 146 (296)
T 4hgt_A 81 VMVMELL-GPSLEDLFNFCS----------RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNL 146 (296)
T ss_dssp EEEEECC-CCBHHHHHHHTT----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTC
T ss_pred EEEEEcc-CCCHHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCe
Confidence 9999999 999999986433 3689999999999999999999999 99999999999999 78899
Q ss_pred EEEeeeccccccccccccc---ceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCc--c
Q 001974 818 AHVGDFGLARVRQEVSNLT---QSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL--N 892 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~--~ 892 (988)
+||+|||+++......... ........||+.|+|||++.+..++.++|||||||++|||++|+.||........ .
T Consensus 147 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~ 226 (296)
T 4hgt_A 147 VYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK 226 (296)
T ss_dssp EEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH
T ss_pred EEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh
Confidence 9999999998765433211 1122345689999999999999999999999999999999999999975432211 1
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
+........ ..........+++++.+++.+||+.||++|||++++++.|+++.
T Consensus 227 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~ 279 (296)
T 4hgt_A 227 YERISEKKM---------------------------STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 279 (296)
T ss_dssp HHHHHHHHH---------------------------HSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred hhhhhcccc---------------------------cchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 111111000 00000111246778999999999999999999999999999998
Q ss_pred HHhhhhcc
Q 001974 973 NALLEAWN 980 (988)
Q Consensus 973 ~~~~~~~~ 980 (988)
++....+.
T Consensus 280 ~~~~~~~~ 287 (296)
T 4hgt_A 280 HRQGFSYD 287 (296)
T ss_dssp HHHTCCTT
T ss_pred HHhCCCcc
Confidence 88765443
No 97
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=356.15 Aligned_cols=285 Identities=20% Similarity=0.300 Sum_probs=213.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++... .....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~~ 84 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRHK 84 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCCE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecC---CCceE
Confidence 457999999999999999999999899999999997433 23356788999999999999999999986532 33578
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee----CCCC
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL----DNDM 816 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~ 816 (988)
++||||+++++|.+++...... ..+++.+++.++.||+.||+|||+. +|+||||||+||++ +.++
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~~~--------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 153 (319)
T 4euu_A 85 VLIMEFCPCGSLYTVLEEPSNA--------YGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQS 153 (319)
T ss_dssp EEEEECCTTCBHHHHHHSGGGT--------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCE
T ss_pred EEEEeCCCCCCHHHHHHHhccc--------cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCc
Confidence 9999999999999999764311 2389999999999999999999999 99999999999999 7888
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccC--------CCCCCCccchHHHHHHHHHHHhCCCCCCcccc
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL--------GSEVSTNGDIYSYGILLLEMVTGKKPTDVMFE 888 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~sDvwslG~vl~elltg~~p~~~~~~ 888 (988)
.+||+|||+++........ ....||+.|+|||++. +..++.++|||||||++|||++|+.||.....
T Consensus 154 ~~kL~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~ 228 (319)
T 4euu_A 154 VYKLTDFGAARELEDDEQF-----VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG 228 (319)
T ss_dssp EEEECCCTTCEECCTTCCB-----CCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTC
T ss_pred eEEEccCCCceecCCCCce-----eecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence 9999999999876543322 2245899999999875 57889999999999999999999999874332
Q ss_pred CCcchHHHHHHHHhhhhhhhhccc--cccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 889 GDLNLHNYARTALLDHVIDIVDPI--LINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.... ................... ......+|..... .........+..+.+++.+||+.||++|||++|+++
T Consensus 229 ~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~ 302 (319)
T 4euu_A 229 PRRN-KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMP-----VSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA 302 (319)
T ss_dssp GGGC-HHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCC-----TTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred cchh-HHHHHHHhcCCCcccchhhhcccCCccccCccCC-----cccccchhHHHHhHHHHHHhccCChhhhccHHHhhh
Confidence 2211 1222222211111100000 0001111111000 000122356778999999999999999999999999
Q ss_pred HHHHH
Q 001974 967 ELQSV 971 (988)
Q Consensus 967 ~L~~i 971 (988)
...+.
T Consensus 303 h~~d~ 307 (319)
T 4euu_A 303 ETSDI 307 (319)
T ss_dssp HHHHH
T ss_pred ccHHH
Confidence 88764
No 98
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.2e-40 Score=368.51 Aligned_cols=265 Identities=24% Similarity=0.413 Sum_probs=200.5
Q ss_pred CCCCCceeccccceeEEEEEECCC---CeEEEEEEeecc-ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 664 GFSSTHLIGMGSFGSVYKGAFDQD---GTIVAIKVFNLQ-RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 664 ~y~~~~~lg~G~~g~Vy~a~~~~~---~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.|++.+.||+|+||+||+|++..+ +..||+|.++.. .....+.+.+|+.++++++||||++++++|.. .++.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC----CSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc----CCCC
Confidence 466778999999999999997533 246899998643 33445789999999999999999999998643 3467
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++|+|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||++++++.+|
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~~----------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~k 232 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNET----------HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVK 232 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCTT----------CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEE
T ss_pred eEEEEECCCCCCHHHHHhhcc----------cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEE
Confidence 899999999999999997654 2578899999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++.................+|+.|+|||++.+..++.++|||||||++|||+| |.+||......+ .....
T Consensus 233 L~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~--~~~~~- 309 (373)
T 3c1x_A 233 VADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYL- 309 (373)
T ss_dssp ECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC--HHHHH-
T ss_pred EeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH--HHHHH-
Confidence 99999998654432222222233457889999999999999999999999999999999 777776432111 11100
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
.. ......+..++.++.+++.+||+.||++|||++|+++.|+++...+..
T Consensus 310 ---~~--------------------------~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~ 359 (373)
T 3c1x_A 310 ---LQ--------------------------GRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 359 (373)
T ss_dssp ---HT--------------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred ---Hc--------------------------CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence 00 000112235778899999999999999999999999999999887654
No 99
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-39 Score=358.19 Aligned_cols=277 Identities=23% Similarity=0.343 Sum_probs=205.5
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc--CCCCceEEEeecccccccCC
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI--RHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~~~~~~~ 737 (988)
...++|++.+.||+|+||.||+|++ .++.||||++.... ...+..|.+++... +||||+++++++... ....
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~-~~~~ 107 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKW--RGEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKG-TGSW 107 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEES-CGGG
T ss_pred ccccceEEEeEeecCCCeEEEEEEE--CCceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccC-CCCC
Confidence 3457899999999999999999998 58999999986432 24455566666554 999999999997543 2222
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC-----CCCeEeccCCCCCeee
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC-----QEPVLHCDLKPGNVLL 812 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlkp~NIll 812 (988)
...++||||+++|+|.+++.. ..+++.+++.++.|++.||+|||+.+ .++|+||||||+||++
T Consensus 108 ~~~~lv~e~~~~g~L~~~l~~------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill 175 (337)
T 3mdy_A 108 TQLYLITDYHENGSLYDYLKS------------TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILV 175 (337)
T ss_dssp CEEEEEECCCTTCBHHHHHHH------------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEE
T ss_pred CceEEEEeccCCCcHHHHhhc------------cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEE
Confidence 678999999999999999853 25899999999999999999999751 3489999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCc------cchHHHHHHHHHHHhC-------
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTN------GDIYSYGILLLEMVTG------- 879 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------sDvwslG~vl~elltg------- 879 (988)
+.++.+||+|||+++.................||+.|+|||++.+...+.+ +|||||||++|||+||
T Consensus 176 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~ 255 (337)
T 3mdy_A 176 KKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIV 255 (337)
T ss_dssp CTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBC
T ss_pred CCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccc
Confidence 999999999999997654433222222234569999999999988766665 9999999999999999
Q ss_pred ---CCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCC
Q 001974 880 ---KKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQ 956 (988)
Q Consensus 880 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 956 (988)
+.||......+..+............ .+ .... ......++.++.+++.+||+.||+
T Consensus 256 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~-------------~~~~~~~~~~l~~li~~~l~~dP~ 314 (337)
T 3mdy_A 256 EEYQLPYHDLVPSDPSYEDMREIVCIKKL----RP----SFPN-------------RWSSDECLRQMGKLMTECWAHNPA 314 (337)
T ss_dssp CCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CC----CCCG-------------GGGGSHHHHHHHHHHHHHSCSSGG
T ss_pred ccccccHhhhcCCCCchhhhHHHHhhhcc----Cc----cccc-------------cchhhHHHHHHHHHHHHhhhhChh
Confidence 55555433333332222211111100 00 0000 011235778899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 001974 957 DRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 957 ~RPs~~evl~~L~~i~~~~ 975 (988)
+|||++|+++.|+++.+..
T Consensus 315 ~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 315 SRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp GSCCHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhhc
Confidence 9999999999999998753
No 100
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=371.86 Aligned_cols=254 Identities=19% Similarity=0.232 Sum_probs=203.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||+||+|.+..+|+.||+|++..... ...+.+.+|+++++.++||||+++++++. +++.
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-----~~~~ 84 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSIS-----EEGH 84 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEE-----CSSE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEE-----ECCE
Confidence 4679999999999999999999999999999999975432 23467889999999999999999999954 4588
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC---CCC
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD---NDM 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~---~~~ 816 (988)
.++||||+++|+|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+||+++ .++
T Consensus 85 ~~lv~E~~~gg~L~~~i~~~~-----------~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~ 150 (444)
T 3soa_A 85 HYLIFDLVTGGELFEDIVARE-----------YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGA 150 (444)
T ss_dssp EEEEECCCBCCBHHHHHHHCS-----------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTC
T ss_pred EEEEEEeCCCCCHHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCC
Confidence 999999999999999886543 689999999999999999999999 999999999999998 467
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+++........ .....||+.|+|||++.+..++.++||||+||++|+|++|+.||.... ....
T Consensus 151 ~vkL~DFG~a~~~~~~~~~----~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~-----~~~~ 221 (444)
T 3soa_A 151 AVKLADFGLAIEVEGEQQA----WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED-----QHRL 221 (444)
T ss_dssp CEEECCCSSCBCCCTTCCB----CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHH
T ss_pred cEEEccCceeEEecCCCce----eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc-----HHHH
Confidence 8999999999865543221 223569999999999999999999999999999999999999986321 1111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.... .. ......... ...+++++.+++.+||+.||++|||++|+++.
T Consensus 222 ~~~i-~~-------~~~~~~~~~----------------~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 222 YQQI-KA-------GAYDFPSPE----------------WDTVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp HHHH-HH-------TCCCCCTTT----------------TTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHH-Hh-------CCCCCCccc----------------cccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 1110 00 000000001 12467789999999999999999999999863
No 101
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1.8e-39 Score=360.30 Aligned_cols=253 Identities=22% Similarity=0.316 Sum_probs=200.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|+++.+++.||+|+++... ....+.+.+|..+++++ +||||+++++++. .+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~-----~~ 82 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQ-----TE 82 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CS
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEE-----eC
Confidence 357899999999999999999999999999999997542 23345688999999988 8999999999954 45
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.
T Consensus 83 ~~~~lv~e~~~gg~L~~~l~~~-----------~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~ 148 (345)
T 3a8x_A 83 SRLFFVIEYVNGGDLMFHMQRQ-----------RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGH 148 (345)
T ss_dssp SEEEEEECCCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSC
T ss_pred CEEEEEEeCCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCC
Confidence 8899999999999999998643 3689999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......+... ...
T Consensus 149 ~kL~DFG~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-~~~ 223 (345)
T 3a8x_A 149 IKLTDYGMCKEGLRPGD----TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPD-QNT 223 (345)
T ss_dssp EEECCGGGCBCSCCTTC----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC--------C
T ss_pred EEEEeccccccccCCCC----cccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccc-ccc
Confidence 99999999985332211 1223569999999999999999999999999999999999999996432211000 000
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSI 961 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 961 (988)
..... ..+.......+..++.++.+++.+||+.||++||++
T Consensus 224 ~~~~~-----------------------~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 224 EDYLF-----------------------QVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp HHHHH-----------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred HHHHH-----------------------HHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 00000 011111112234567789999999999999999996
No 102
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=356.76 Aligned_cols=282 Identities=24% Similarity=0.275 Sum_probs=204.0
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-----cchhHHHHHHHHHHHhcC---CCCceEEEeecccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-----HGASKSFLAECKALKNIR---HRNLVKVITSCSSI 732 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~ 732 (988)
..++|++.+.||+|+||+||+|++..+++.||+|+++... ......+.+|+.++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4678999999999999999999998899999999986432 122356778888887774 99999999998654
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
........++||||+. ++|.+++..... ..+++.+++.++.||+.||+|||+. +|+||||||+||++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~---------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~ 153 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP---------PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILV 153 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT---------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC---------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEE
Confidence 2222336799999995 699999976542 2489999999999999999999999 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN 892 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 892 (988)
+.++.+||+|||+++........ ....||+.|+|||++.+..++.++|||||||++|||++|+.||...... .
T Consensus 154 ~~~~~~kl~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~--~ 226 (308)
T 3g33_A 154 TSGGTVKLADFGLARIYSYQMAL-----TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA--D 226 (308)
T ss_dssp CTTSCEEECSCSCTTTSTTCCCS-----GGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHH--H
T ss_pred cCCCCEEEeeCccccccCCCccc-----CCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH--H
Confidence 99999999999999865433221 2346899999999999999999999999999999999999998642111 0
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...........................+. ............+++.++.+++.+||+.||++|||++|+++
T Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 227 QLGKIFDLIGLPPEDDWPRDVSLPRGAFP----PRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp HHHHHHHHHCCCCTTTSCSSCSSCGGGSC----CCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhCCCChhhccchhhccccccC----CCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 10001000000000000000000000000 00000001112356788999999999999999999999875
No 103
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.5e-39 Score=361.40 Aligned_cols=246 Identities=22% Similarity=0.282 Sum_probs=204.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+|+.||+|+++... ....+.+.+|+++++.++||||+++++++. +++
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~ 114 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFK-----DNS 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----cCC
Confidence 357999999999999999999999899999999996432 234467889999999999999999999854 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++... ..+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+
T Consensus 115 ~~~lv~e~~~gg~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~ 180 (350)
T 1rdq_E 115 NLYMVMEYVAGGEMFSHLRRI-----------GRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYI 180 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCE
T ss_pred EEEEEEcCCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCE
Confidence 899999999999999998643 2689999999999999999999998 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.... ......
T Consensus 181 kL~DFg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-----~~~~~~ 248 (350)
T 1rdq_E 181 QVTDFGFAKRVKGR-------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ-----PIQIYE 248 (350)
T ss_dssp EECCCTTCEECSSC-------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH
T ss_pred EEcccccceeccCC-------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC-----HHHHHH
Confidence 99999999865432 123468999999999999999999999999999999999999986321 111110
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC-----HHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS-----ITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 966 (988)
. + .......+..++.++.+++.+||+.||++||+ ++|+++
T Consensus 249 ~-----i-----------------------~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 249 K-----I-----------------------VSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp H-----H-----------------------HHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred H-----H-----------------------HcCCCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 0 0 00111223356778999999999999999998 788765
No 104
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=6.1e-40 Score=356.38 Aligned_cols=265 Identities=25% Similarity=0.447 Sum_probs=216.9
Q ss_pred HHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 658 LFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 658 l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
+....++|++.+.||+|+||.||+|++..+++.||+|++... ....+.+.+|++++++++||||+++++++. .+
T Consensus 8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~ 81 (288)
T 3kfa_A 8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----RE 81 (288)
T ss_dssp TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SS
T ss_pred ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cC
Confidence 334567899999999999999999999988999999999743 334578999999999999999999999954 45
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++++|.+++..... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 82 ~~~~~v~e~~~~~~L~~~~~~~~~---------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~ 149 (288)
T 3kfa_A 82 PPFYIITEFMTYGNLLDYLRECNR---------QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHL 149 (288)
T ss_dssp SSEEEEEECCTTEEHHHHHHHCCT---------TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGC
T ss_pred CCEEEEEEcCCCCcHHHHHHhccc---------CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCC
Confidence 788999999999999999965432 3589999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||.+........ .......+|+.|+|||++.+..++.++||||||+++|+|++ |..||...... ...
T Consensus 150 ~~l~Dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~-- 222 (288)
T 3kfa_A 150 VKVADFGLSRLMTGDTY---TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVY-- 222 (288)
T ss_dssp EEECCCCGGGTSCSSSS---EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHH--
T ss_pred EEEccCccceeccCCcc---ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHH--
Confidence 99999999986654321 12233457889999999998899999999999999999999 99998642111 000
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
+.+.. ......+..+++++.+++.+||+.||++|||++|+++.|+++..+.
T Consensus 223 ----------~~~~~------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~ 273 (288)
T 3kfa_A 223 ----------ELLEK------------------DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES 273 (288)
T ss_dssp ----------HHHHT------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ----------HHHhc------------------cCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence 00000 0011223457788999999999999999999999999999987654
No 105
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.4e-39 Score=355.42 Aligned_cols=267 Identities=24% Similarity=0.419 Sum_probs=209.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCC---CeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQD---GTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
..+|++.+.||+|+||+||+|++..+ ...||+|.+.... ....+.+.+|+.++++++||||++++++|.. .+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~ 99 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SE 99 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SS
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc----CC
Confidence 35688899999999999999997533 3368999986433 3345678999999999999999999998643 34
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++|+|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 100 ~~~~~v~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~ 166 (298)
T 3f66_A 100 GSPLVVLPYMKHGDLRNFIRNET----------HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFT 166 (298)
T ss_dssp SCCEEEEECCTTCBHHHHHHCTT----------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCC
T ss_pred CceEEEEeCCCCCCHHHHHHhcc----------cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCC
Confidence 67899999999999999997543 3578999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||+++.................+|+.|+|||.+.+..++.++||||+|+++|||++ |.+||......+ ....
T Consensus 167 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~--~~~~ 244 (298)
T 3f66_A 167 VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVY 244 (298)
T ss_dssp EEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT--HHHH
T ss_pred EEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH--HHHH
Confidence 9999999998765443333333344568889999999998899999999999999999999 555654321111 1000
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhh
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALL 976 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 976 (988)
. . .......+..++.++.+++.+||+.||++|||++|+++.|+++.+.+.
T Consensus 245 ~----~--------------------------~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~ 294 (298)
T 3f66_A 245 L----L--------------------------QGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 294 (298)
T ss_dssp H----H--------------------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred H----h--------------------------cCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence 0 0 000111123467789999999999999999999999999999988654
Q ss_pred h
Q 001974 977 E 977 (988)
Q Consensus 977 ~ 977 (988)
.
T Consensus 295 ~ 295 (298)
T 3f66_A 295 G 295 (298)
T ss_dssp C
T ss_pred c
Confidence 3
No 106
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=7.9e-40 Score=369.87 Aligned_cols=260 Identities=19% Similarity=0.249 Sum_probs=207.2
Q ss_pred HHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 001974 656 ESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNIRHRNLVKVITSCSSI 732 (988)
Q Consensus 656 ~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 732 (988)
.++....++|++.+.||+|+||+||+|+++.+++.||+|+++.. .....+.+.+|+.+++.++||||+++++++.
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-- 139 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ-- 139 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE--
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE--
Confidence 44555678999999999999999999999999999999999642 1223356889999999999999999999954
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
+++..++||||+++|+|.+++... .+++..++.++.||+.||+|||++ +||||||||+|||+
T Consensus 140 ---~~~~~~lV~E~~~gg~L~~~l~~~------------~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl 201 (410)
T 3v8s_A 140 ---DDRYLYMVMEYMPGGDLVNLMSNY------------DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLL 201 (410)
T ss_dssp ---CSSEEEEEECCCTTEEHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred ---ECCEEEEEEeCCCCCcHHHHHHcC------------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeE
Confidence 458899999999999999998532 578999999999999999999999 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCC----CCCccchHHHHHHHHHHHhCCCCCCcccc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSE----VSTNGDIYSYGILLLEMVTGKKPTDVMFE 888 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDvwslG~vl~elltg~~p~~~~~~ 888 (988)
+.++.+||+|||+|+....... .......||+.|+|||++.+.. ++.++|||||||++|||++|+.||...
T Consensus 202 ~~~g~ikL~DFG~a~~~~~~~~---~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-- 276 (410)
T 3v8s_A 202 DKSGHLKLADFGTCMKMNKEGM---VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-- 276 (410)
T ss_dssp CTTSCEEECCCTTCEECCTTSE---EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS--
T ss_pred CCCCCEEEeccceeEeeccCCc---ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC--
Confidence 9999999999999986544321 1122456999999999987655 789999999999999999999998632
Q ss_pred CCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCC--CCCHHHHHH
Q 001974 889 GDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQD--RMSITNVVH 966 (988)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~evl~ 966 (988)
............. . .........++.++.+++.+||+.+|++ ||+++||++
T Consensus 277 ---~~~~~~~~i~~~~-~-----------------------~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 277 ---SLVGTYSKIMNHK-N-----------------------SLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp ---SHHHHHHHHHTHH-H-----------------------HCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred ---ChhhHHHHHHhcc-c-----------------------cccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 1111111100000 0 0000111256788999999999999999 999999986
Q ss_pred H
Q 001974 967 E 967 (988)
Q Consensus 967 ~ 967 (988)
.
T Consensus 330 H 330 (410)
T 3v8s_A 330 H 330 (410)
T ss_dssp S
T ss_pred C
Confidence 4
No 107
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.7e-39 Score=349.50 Aligned_cols=254 Identities=27% Similarity=0.454 Sum_probs=194.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc----chhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH----GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|.+ .++.||||+++.... ...+.+.+|+++++.++||||+++++++. .+
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 78 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----KE 78 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CC
T ss_pred hhheeeeeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----cC
Confidence 46799999999999999999998 589999999864322 23467899999999999999999999964 34
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC---
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN--- 814 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~--- 814 (988)
+..++||||+++++|.+++... .+++..++.++.|++.||+|||+....+|+||||||+||+++.
T Consensus 79 ~~~~lv~e~~~~~~L~~~~~~~------------~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~ 146 (271)
T 3dtc_A 79 PNLCLVMEFARGGPLNRVLSGK------------RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVE 146 (271)
T ss_dssp --CEEEEECCTTEEHHHHHTSS------------CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCS
T ss_pred CceEEEEEcCCCCCHHHHhhcC------------CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccc
Confidence 7789999999999999998642 5889999999999999999999981112999999999999986
Q ss_pred -----CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccC
Q 001974 815 -----DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEG 889 (988)
Q Consensus 815 -----~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~ 889 (988)
++.+||+|||.++....... ....||+.|+|||.+.+..++.++||||||+++|||++|+.||......
T Consensus 147 ~~~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~ 220 (271)
T 3dtc_A 147 NGDLSNKILKITDFGLAREWHRTTK------MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGL 220 (271)
T ss_dssp SSCCSSCCEEECCCCC-------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH
T ss_pred cccccCcceEEccCCcccccccccc------cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 77899999999986543221 1245899999999999889999999999999999999999998642110
Q ss_pred CcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHH
Q 001974 890 DLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQ 969 (988)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~ 969 (988)
........ .. .....+..+++++.+++.+||+.||++|||++|+++.|+
T Consensus 221 -----~~~~~~~~--------~~------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~ 269 (271)
T 3dtc_A 221 -----AVAYGVAM--------NK------------------LALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLT 269 (271)
T ss_dssp -----HHHHHHHT--------SC------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred -----HHHHhhhc--------CC------------------CCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHh
Confidence 00000000 00 001122356788999999999999999999999999998
Q ss_pred HH
Q 001974 970 SV 971 (988)
Q Consensus 970 ~i 971 (988)
++
T Consensus 270 ~l 271 (271)
T 3dtc_A 270 TI 271 (271)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 108
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=354.37 Aligned_cols=260 Identities=27% Similarity=0.393 Sum_probs=203.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|++.+.||+|+||+||+|++ .++.||+|++... ...+.+.+|++++++++||||+++++++. +..+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~ 75 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKW--RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVC 75 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTE
T ss_pred HhHeeeeeEeecCCCceEEEEEE--CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcE
Confidence 35688999999999999999998 5789999998633 34578999999999999999999999854 3478
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc-EEE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI-AHV 820 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-~kL 820 (988)
+||||+++|+|.+++...... ..+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||
T Consensus 76 lv~e~~~~~~L~~~l~~~~~~--------~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl 147 (307)
T 2eva_A 76 LVMEYAEGGSLYNVLHGAEPL--------PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKI 147 (307)
T ss_dssp EEEECCTTCBHHHHHHCSSSE--------ECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEE
T ss_pred EEEEcCCCCCHHHHHhccCCC--------CccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEE
Confidence 999999999999999764320 24788899999999999999999932239999999999999998886 799
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTA 900 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 900 (988)
+|||++....... ....||+.|+|||++.+..++.++||||||+++|||++|+.||....... ......
T Consensus 148 ~Dfg~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~~- 216 (307)
T 2eva_A 148 CDFGTACDIQTHM-------TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA---FRIMWA- 216 (307)
T ss_dssp CCCCC-------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSH---HHHHHH-
T ss_pred ccccccccccccc-------ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccH---HHHHHH-
Confidence 9999997543321 12358999999999999999999999999999999999999987432111 000000
Q ss_pred HhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 901 LLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 901 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
... .........++..+.+++.+||+.||++|||++|+++.|+.+.+.+..
T Consensus 217 ----~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 217 ----VHN----------------------GTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp ----HHT----------------------TCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred ----Hhc----------------------CCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 000 000112235678899999999999999999999999999999876543
No 109
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=2.9e-39 Score=371.78 Aligned_cols=248 Identities=27% Similarity=0.390 Sum_probs=204.7
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|.+.+.||+|+||.||+|++..+|+.||||+++... ....+.+.+|+.+++.++||||+++++++. .++
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~-----~~~ 89 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-----TPS 89 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECC
Confidence 467999999999999999999999899999999996432 233467899999999999999999999954 347
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 90 ~~~lv~E~~~gg~L~~~l~~~~-----------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~v 155 (476)
T 2y94_A 90 DIFMVMEYVSGGELFDYICKNG-----------RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNA 155 (476)
T ss_dssp EEEEEEECCSSEEHHHHTTSSS-----------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCE
T ss_pred EEEEEEeCCCCCcHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCe
Confidence 8999999999999999997543 689999999999999999999998 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||++........ .....||+.|+|||++.+..+ +.++||||+||++|||++|+.||+... .....
T Consensus 156 kL~DFG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~-----~~~~~ 225 (476)
T 2y94_A 156 KIADFGLSNMMSDGEF-----LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH-----VPTLF 225 (476)
T ss_dssp EECCCSSCEECCTTCC-----BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----SHHHH
T ss_pred EEEeccchhhcccccc-----ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC-----HHHHH
Confidence 9999999987644322 123459999999999988766 689999999999999999999986321 11111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.. +. + .....+..+++++.+++.+||+.||++|||++|+++
T Consensus 226 ~~-----i~---~--------------------~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 226 KK-----IC---D--------------------GIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HH-----HH---T--------------------TCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HH-----Hh---c--------------------CCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 10 00 0 001112346678999999999999999999999987
No 110
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=4.2e-39 Score=353.11 Aligned_cols=277 Identities=25% Similarity=0.312 Sum_probs=201.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||+||+|++. +|+.||+|+++... ....+.+.+|++++++++||||+++++++. .++.
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~ 93 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIH-----SERC 93 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CSSC
T ss_pred HhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEc-----cCCE
Confidence 478999999999999999999996 69999999986432 233467889999999999999999999954 4578
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||++ ++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 94 ~~lv~e~~~-~~l~~~~~~~~----------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~k 159 (311)
T 3niz_A 94 LTLVFEFME-KDLKKVLDENK----------TGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALK 159 (311)
T ss_dssp EEEEEECCS-EEHHHHHHTCT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEE
T ss_pred EEEEEcCCC-CCHHHHHHhcc----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEE
Confidence 999999996 58888876543 3589999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++........ .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ ......
T Consensus 160 l~Dfg~a~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~ 233 (311)
T 3niz_A 160 LADFGLARAFGIPVRS----YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD--QLPKIF 233 (311)
T ss_dssp ECCCTTCEETTSCCC-------CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT--HHHHHH
T ss_pred EccCcCceecCCCccc----ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH--HHHHHH
Confidence 9999999865432211 123458999999999876 568999999999999999999999997533221 111111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHH-HhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQR-LRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
............. ......|....... ...........+++++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 234 SILGTPNPREWPQ--VQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHCCCCTTTSGG--GTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHCCCChHHhhh--hhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 1111100000000 00000000000000 000000112345678899999999999999999999986
No 111
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=4.8e-39 Score=350.81 Aligned_cols=270 Identities=22% Similarity=0.289 Sum_probs=214.1
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++..+++.||+|++.... ..+.+.+|+.+++.++|++++..+.++.. .++..
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~ 80 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYN 80 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccC----CCCce
Confidence 3578999999999999999999998899999999986543 23578999999999999887777766533 35778
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee---CCCCc
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL---DNDMI 817 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~ 817 (988)
++||||+ +++|.+++.... ..+++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~----------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~ 146 (296)
T 3uzp_A 81 VMVMELL-GPSLEDLFNFCS----------RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNL 146 (296)
T ss_dssp EEEEECC-CCBHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTC
T ss_pred EEEEEec-CCCHHHHHHhhc----------cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCe
Confidence 9999999 999999986433 3689999999999999999999999 99999999999999 48889
Q ss_pred EEEeeecccccccccccccc---eeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCc-c-
Q 001974 818 AHVGDFGLARVRQEVSNLTQ---SCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL-N- 892 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~-~- 892 (988)
+||+|||+++.......... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .
T Consensus 147 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~ 226 (296)
T 3uzp_A 147 VYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK 226 (296)
T ss_dssp EEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH
T ss_pred EEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhh
Confidence 99999999987654332111 112345699999999999999999999999999999999999999975332211 1
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
+........ ..........+++++.+++.+||+.||++|||++|+++.|+++.
T Consensus 227 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 279 (296)
T 3uzp_A 227 YERISEKKM---------------------------STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 279 (296)
T ss_dssp HHHHHHHHH---------------------------HSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred hhhhccccc---------------------------CCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHH
Confidence 111111000 00000112356788999999999999999999999999999998
Q ss_pred HHhhh
Q 001974 973 NALLE 977 (988)
Q Consensus 973 ~~~~~ 977 (988)
++...
T Consensus 280 ~~~~~ 284 (296)
T 3uzp_A 280 HRQGF 284 (296)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 77544
No 112
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.7e-39 Score=353.43 Aligned_cols=269 Identities=22% Similarity=0.337 Sum_probs=200.7
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
++|++.+.||+|+||+||+|++..+++.||+|+++.... ...+.+.+|+.++++++||||+++++++. .++..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEE-----eCCEE
Confidence 579999999999999999999999999999999974432 33467889999999999999999999964 44789
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++ ++.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 77 ~lv~e~~~~-~l~~~~~~~~----------~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl 142 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSCN----------GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKL 142 (292)
T ss_dssp EEEEECCSE-EHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEE
T ss_pred EEEEecCCC-CHHHHHHhCC----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEE
Confidence 999999965 6655554322 3689999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCC-CCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSE-VSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+++....... ......||+.|+|||++.+.. ++.++||||+||++|||++|..||...... ......
T Consensus 143 ~Dfg~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~----~~~~~~ 214 (292)
T 3o0g_A 143 ANFGLARAFGIPVR----CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV----DDQLKR 214 (292)
T ss_dssp CCCTTCEECCSCCS----CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSH----HHHHHH
T ss_pred eecccceecCCccc----cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCH----HHHHHH
Confidence 99999986543221 122346899999999988765 799999999999999999988885322111 111111
Q ss_pred HHhhhhhhhhccccccCcchhhhhhH---------HHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNK---------QRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
... .... .....|..... .............++.++.+++.+||+.||++|||++|+++
T Consensus 215 i~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 215 IFR-----LLGT---PTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp HHH-----HHCC---CCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHH-----HhCC---CChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 100 0000 00000100000 00000011122356788999999999999999999999975
No 113
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=5.3e-40 Score=379.56 Aligned_cols=262 Identities=26% Similarity=0.455 Sum_probs=212.1
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
....++|++.+.||+|+||.||+|.+. .+..||||+++... ...+.+.+|+.++++++||||+++++++. .+
T Consensus 184 ~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~------~~ 255 (454)
T 1qcf_A 184 EIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT------KE 255 (454)
T ss_dssp BCCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC------SS
T ss_pred eechHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe------CC
Confidence 345567899999999999999999996 67889999997543 34678999999999999999999999864 35
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++.... ...+++.+++.++.||+.||+|||++ +|+||||||+|||++.++.+
T Consensus 256 ~~~lv~e~~~~g~L~~~l~~~~---------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~ 323 (454)
T 1qcf_A 256 PIYIITEFMAKGSLLDFLKSDE---------GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVC 323 (454)
T ss_dssp SCEEEECCCTTCBHHHHHHSHH---------HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCE
T ss_pred ccEEEEeecCCCcHHHHHHhcc---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcE
Confidence 6899999999999999996432 13688999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||+++....... .......++..|+|||++....++.++|||||||++|||+| |+.||..... ....
T Consensus 324 kl~DFG~a~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~-----~~~~ 395 (454)
T 1qcf_A 324 KIADFGLARVIEDNEY---TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN-----PEVI 395 (454)
T ss_dssp EECSTTGGGGBCCHHH---HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----HHHH
T ss_pred EEeeCCCceEcCCCce---eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH-----HHHH
Confidence 9999999986543211 11123346789999999998899999999999999999999 9999863211 0111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
. .+.. ......+..+++++.++|.+||+.||++|||+++|++.|+++.++.
T Consensus 396 ~-----~i~~----------------------~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 396 R-----ALER----------------------GYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp H-----HHHH----------------------TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred H-----HHHc----------------------CCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence 0 0000 0011223467889999999999999999999999999999875543
No 114
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=1.6e-39 Score=361.01 Aligned_cols=250 Identities=20% Similarity=0.277 Sum_probs=202.9
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 736 (988)
..++|++.+.||+|+||.||+|+++.+++.||+|+++.. .....+.+..|..++..+ +||+|+++++++ ..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~ 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QT 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE-----EC
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE-----Ec
Confidence 457899999999999999999999988999999999743 223456788999999988 899999999985 44
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
.+..++||||+++|+|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 93 ~~~~~lv~E~~~gg~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g 158 (353)
T 2i0e_A 93 MDRLYFVMEYVNGGDLMYHIQQV-----------GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEG 158 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTS
T ss_pred CCEEEEEEeCCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCC
Confidence 58899999999999999998643 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... ....
T Consensus 159 ~vkL~DFG~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~-----~~~~ 229 (353)
T 2i0e_A 159 HIKIADFGMCKENIWDGV----TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED-----EDEL 229 (353)
T ss_dssp CEEECCCTTCBCCCCTTC----CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHH
T ss_pred cEEEEeCCcccccccCCc----ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC-----HHHH
Confidence 999999999985332211 1223569999999999999999999999999999999999999986321 1111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC-----HHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS-----ITNVVH 966 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 966 (988)
... +. ......+..++.++.+++.+||+.||++||+ ++|+++
T Consensus 230 ~~~-----i~-----------------------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 230 FQS-----IM-----------------------EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp HHH-----HH-----------------------HCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred HHH-----HH-----------------------hCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 110 00 0111223356778999999999999999995 466654
No 115
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=7.8e-40 Score=365.13 Aligned_cols=255 Identities=19% Similarity=0.266 Sum_probs=202.5
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-----cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-----HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
++|++.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|+.+++.++||||+++++++. .+
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~ 98 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS-----SD 98 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ET
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eC
Confidence 46999999999999999999999999999999986322 123577999999999999999999999864 34
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++++|.+++..... ....+++..++.++.||+.||+|||++ +|+||||||+||+++.++.
T Consensus 99 ~~~~lv~e~~~g~~L~~~l~~~~~-------~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~ 168 (351)
T 3c0i_A 99 GMLYMVFEFMDGADLCFEIVKRAD-------AGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKEN 168 (351)
T ss_dssp TEEEEEEECCSSCBHHHHHHHHHH-------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSST
T ss_pred CEEEEEEeCCCCCCHHHHHHHhcc-------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCC
Confidence 789999999999999888753211 012489999999999999999999999 9999999999999986654
Q ss_pred ---EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 818 ---AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 818 ---~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
+||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.... .
T Consensus 169 ~~~vkl~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~ 238 (351)
T 3c0i_A 169 SAPVKLGGFGVAIQLGESGL----VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK------E 238 (351)
T ss_dssp TCCEEECCCTTCEECCTTSC----BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH------H
T ss_pred CCcEEEecCcceeEecCCCe----eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH------H
Confidence 99999999987654321 1223469999999999999999999999999999999999999986421 0
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
... ..+ ........... ...++.++.+++.+||+.||++|||+.|+++
T Consensus 239 ~~~-----~~i---~~~~~~~~~~~----------------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 239 RLF-----EGI---IKGKYKMNPRQ----------------WSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHH-----HHH---HHTCCCCCHHH----------------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHH-----HHH---HcCCCCCCccc----------------cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 100 00000001111 1246778999999999999999999999986
No 116
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=8.6e-40 Score=361.35 Aligned_cols=261 Identities=21% Similarity=0.352 Sum_probs=206.9
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeE----EEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTI----VAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
.++|++.+.||+|+||+||+|++..+++. ||+|++.... ....+.+.+|+.++++++||||+++++++.
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------ 85 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------ 85 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------
Confidence 35789999999999999999999877765 7777775332 233456789999999999999999999864
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
++..++||||+++|+|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 86 ~~~~~~v~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~ 152 (325)
T 3kex_A 86 GSSLQLVTQYLPLGSLLDHVRQHR----------GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPS 152 (325)
T ss_dssp BSSEEEEEECCTTCBSHHHHHSSG----------GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHcc----------ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCC
Confidence 256899999999999999997643 3688999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+++......... ......+|..|+|||++.+..++.++|||||||++|||+| |+.||...... ....
T Consensus 153 ~~kl~Dfg~a~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~ 228 (325)
T 3kex_A 153 QVQVADFGVADLLPPDDKQL--LYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPD 228 (325)
T ss_dssp CEEECSCSGGGGSCCCTTCC--C-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHH
T ss_pred eEEECCCCcccccCcccccc--cccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHH
Confidence 99999999998765433211 1223457889999999998899999999999999999999 99998743211 0000
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
. +.. ......+..++.++.+++.+||+.||++|||++|+++.|+++...-
T Consensus 229 ~------------~~~------------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~ 278 (325)
T 3kex_A 229 L------------LEK------------------GERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARDP 278 (325)
T ss_dssp H------------HHT------------------TCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred H------------HHc------------------CCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 0 000 0011122345667889999999999999999999999999986543
No 117
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.8e-39 Score=348.42 Aligned_cols=248 Identities=23% Similarity=0.352 Sum_probs=182.9
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++. .++
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 86 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-----SKD 86 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----cCC
Confidence 367999999999999999999999899999999986432 233467889999999999999999999964 447
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+ ++++.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||++++++.+
T Consensus 87 ~~~lv~e~~-~~~l~~~~~~~~-----------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~ 151 (275)
T 2eue_A 87 EIIMVIEYA-GNELFDYIVQRD-----------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNV 151 (275)
T ss_dssp CEEEEEECC-CEEHHHHHHTSS-----------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCE
T ss_pred eEEEEehhc-CCcHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCE
Confidence 899999999 788888876543 589999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||++......... ....||+.|+|||.+.+..+ +.++||||+||++|||++|+.||.... .....
T Consensus 152 kl~Dfg~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~~ 221 (275)
T 2eue_A 152 KIADFGLSNIMTDGNFL-----KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLF 221 (275)
T ss_dssp EECCSSCC--------------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHH
T ss_pred EEeecccceeccCcccc-----cCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCC-----HHHHH
Confidence 99999999765443221 22358999999999988765 789999999999999999999986321 11110
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.. +.......+..+++++.+++.+||+.||++|||++|+++.
T Consensus 222 ~~----------------------------~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 222 KN----------------------------ISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp HH----------------------------HHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred HH----------------------------HHhCCCCCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 00 0011112233567789999999999999999999999763
No 118
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=7.3e-40 Score=365.45 Aligned_cols=276 Identities=23% Similarity=0.357 Sum_probs=212.8
Q ss_pred HHhhCCCCCCceeccccceeEEEEEEC-----CCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFD-----QDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSI 732 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 732 (988)
....++|++.+.||+|+||.||+|++. .+++.||+|+++.... ...+.+.+|+.++++++||||+++++++.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-- 120 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA-- 120 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--
Confidence 345678999999999999999999996 3458999999975432 33567899999999999999999999964
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCc-------------hhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQK-------------DVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP 799 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~-------------~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ 799 (988)
.++..++||||+++|+|.+++........ ........+++.+++.++.||+.||+|||++ +
T Consensus 121 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ 194 (343)
T 1luf_A 121 ---VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K 194 (343)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred ---cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 34788999999999999999975431100 0000114689999999999999999999999 9
Q ss_pred eEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-
Q 001974 800 VLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT- 878 (988)
Q Consensus 800 ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt- 878 (988)
|+||||||+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++
T Consensus 195 ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~ 272 (343)
T 1luf_A 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY--KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY 272 (343)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCB--C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred eecCCCCcceEEECCCCeEEEeecCCCcccccCccc--cccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhc
Confidence 999999999999999999999999999865433211 11223457899999999988899999999999999999999
Q ss_pred CCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCC
Q 001974 879 GKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDR 958 (988)
Q Consensus 879 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R 958 (988)
|+.||..... ...... +. +. .....+..++.++.+++.+||+.||++|
T Consensus 273 g~~p~~~~~~-----~~~~~~-----~~---~~-------------------~~~~~~~~~~~~l~~li~~~l~~~p~~R 320 (343)
T 1luf_A 273 GLQPYYGMAH-----EEVIYY-----VR---DG-------------------NILACPENCPLELYNLMRLCWSKLPADR 320 (343)
T ss_dssp TCCTTTTSCH-----HHHHHH-----HH---TT-------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred CCCcCCCCCh-----HHHHHH-----Hh---CC-------------------CcCCCCCCCCHHHHHHHHHHcccCcccC
Confidence 9999863211 111100 00 00 0011223577889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 001974 959 MSITNVVHELQSVKNALL 976 (988)
Q Consensus 959 Ps~~evl~~L~~i~~~~~ 976 (988)
||++|+++.|+++.+.+.
T Consensus 321 ps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 321 PSFCSIHRILQRMCERAE 338 (343)
T ss_dssp CCHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999999876544
No 119
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.7e-39 Score=376.84 Aligned_cols=203 Identities=29% Similarity=0.374 Sum_probs=161.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||+||+|++..+++.||||++... .....+.+.+|++++++++||||+++++++....+.....
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 47899999999999999999999999999999998643 2234467899999999999999999999986655556678
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+ +++|.+++.... .+++..++.++.||+.||+|||+. +||||||||+|||++.++.+|
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-----------~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~k 196 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV-----------YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVK 196 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC-----------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEE
T ss_pred EEEEEecc-ccchhhhcccCC-----------CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEe
Confidence 99999998 689999986543 689999999999999999999999 999999999999999999999
Q ss_pred Eeeeccccccccccccc-----------------------ceeccccccccccccCccc-CCCCCCCccchHHHHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLT-----------------------QSCSVGVRGTIGYAAPEYG-LGSEVSTNGDIYSYGILLLE 875 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~-----------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~sDvwslG~vl~e 875 (988)
|+|||+|+......... .....+.+||+.|+|||++ .+..++.++|||||||++||
T Consensus 197 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~e 276 (458)
T 3rp9_A 197 VCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAE 276 (458)
T ss_dssp ECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHH
T ss_pred ecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHH
Confidence 99999998764322110 0122345789999999976 56679999999999999999
Q ss_pred HHhC
Q 001974 876 MVTG 879 (988)
Q Consensus 876 lltg 879 (988)
|++|
T Consensus 277 lltg 280 (458)
T 3rp9_A 277 LLNM 280 (458)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9994
No 120
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=359.63 Aligned_cols=252 Identities=23% Similarity=0.279 Sum_probs=189.9
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++..+++.||||+++... ..+.+.+|++++++++||||+++++++. .++..
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~~~~ 123 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFE-----TPTEI 123 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEe-----cCCeE
Confidence 3567999999999999999999999899999999997543 3467889999999999999999999964 34789
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC---CCc
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN---DMI 817 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~~ 817 (988)
++||||+++++|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+||+++. ++.
T Consensus 124 ~lv~e~~~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~ 189 (349)
T 2w4o_A 124 SLVLELVTGGELFDRIVEKG-----------YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAP 189 (349)
T ss_dssp EEEECCCCSCBHHHHHTTCS-----------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCC
T ss_pred EEEEEeCCCCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCC
Confidence 99999999999999997653 589999999999999999999999 9999999999999975 889
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...
T Consensus 190 ~kl~Dfg~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-----~~~ 259 (349)
T 2w4o_A 190 LKIADFGLSKIVEHQVL-----MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD-----QFM 259 (349)
T ss_dssp EEECCCC---------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH-----HHH
T ss_pred EEEccCccccccCcccc-----cccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc-----HHH
Confidence 99999999986543221 12345899999999999999999999999999999999999998632111 000
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...+.. ....... .....++.++.+++.+||+.||++|||++|+++
T Consensus 260 ~~~i~~-------~~~~~~~----------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 260 FRRILN-------CEYYFIS----------------PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp HHHHHT-------TCCCCCT----------------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHh-------CCCccCC----------------chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000000 0000000 011246778999999999999999999999986
No 121
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=2.3e-39 Score=356.65 Aligned_cols=272 Identities=24% Similarity=0.365 Sum_probs=212.9
Q ss_pred hhCCCCCCceeccccceeEEEEEE-----CCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAF-----DQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDF 734 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~-----~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 734 (988)
..++|.+.+.||+|+||.||+|++ ..+++.||+|+++... ....+.+.+|++++++++||||+++++++.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 96 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS---- 96 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC----
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe----
Confidence 457799999999999999999998 3456899999997543 334467899999999999999999999954
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCc-------------hhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeE
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQK-------------DVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVL 801 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~-------------~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 801 (988)
.++..++||||+++++|.+++........ ........+++.+++.++.||+.||+|||++ +|+
T Consensus 97 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iv 172 (314)
T 2ivs_A 97 -QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLV 172 (314)
T ss_dssp -SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred -cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCc
Confidence 44788999999999999999975432100 0001123589999999999999999999999 999
Q ss_pred eccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CC
Q 001974 802 HCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GK 880 (988)
Q Consensus 802 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~ 880 (988)
||||||+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |+
T Consensus 173 H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~ 250 (314)
T 2ivs_A 173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSY--VKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG 250 (314)
T ss_dssp CCCCSGGGEEEETTTEEEECCCTTCEECTTTSCE--ECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred ccccchheEEEcCCCCEEEccccccccccccccc--eeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999865443221 11223457889999999998889999999999999999999 99
Q ss_pred CCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC
Q 001974 881 KPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS 960 (988)
Q Consensus 881 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs 960 (988)
.||...... ..... +.. ......+..+++++.+++.+||+.||++|||
T Consensus 251 ~p~~~~~~~--~~~~~--------~~~----------------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps 298 (314)
T 2ivs_A 251 NPYPGIPPE--RLFNL--------LKT----------------------GHRMERPDNCSEEMYRLMLQCWKQEPDKRPV 298 (314)
T ss_dssp CSSTTCCGG--GHHHH--------HHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred CCCCCCCHH--HHHHH--------hhc----------------------CCcCCCCccCCHHHHHHHHHHccCChhhCcC
Confidence 998642211 00000 000 0011123357788999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001974 961 ITNVVHELQSVKNA 974 (988)
Q Consensus 961 ~~evl~~L~~i~~~ 974 (988)
++|+++.|+++.++
T Consensus 299 ~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 299 FADISKDLEKMMVK 312 (314)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 122
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=7.4e-40 Score=355.89 Aligned_cols=253 Identities=21% Similarity=0.356 Sum_probs=204.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCC-------eEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDG-------TIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDF 734 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 734 (988)
.++|++.+.||+|+||+||+|++..++ +.||+|++........+.+.+|+.++++++||||+++++++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---- 82 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCV---- 82 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEEC----
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE----
Confidence 467899999999999999999997666 579999997666666788999999999999999999999964
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN 814 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 814 (988)
.++..++||||+++|+|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.
T Consensus 83 -~~~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~ 148 (289)
T 4fvq_A 83 -CGDENILVQEFVKFGSLDTYLKKNK----------NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIR 148 (289)
T ss_dssp -CTTCCEEEEECCTTCBHHHHHHHTG----------GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEE
T ss_pred -eCCCCEEEEECCCCCCHHHHHHhCC----------CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEec
Confidence 3477899999999999999996543 3589999999999999999999999 9999999999999998
Q ss_pred CCc--------EEEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCC-CC
Q 001974 815 DMI--------AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKP-TD 884 (988)
Q Consensus 815 ~~~--------~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p-~~ 884 (988)
++. +||+|||.+....... ...||+.|+|||++.+ ..++.++|||||||++|||++|..| |.
T Consensus 149 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~ 220 (289)
T 4fvq_A 149 EEDRKTGNPPFIKLSDPGISITVLPKD--------ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLS 220 (289)
T ss_dssp CCBGGGTBCCEEEECCCCSCTTTSCHH--------HHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred CCcccccccceeeeccCcccccccCcc--------ccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcc
Confidence 887 9999999997543321 1347889999999887 6789999999999999999995544 43
Q ss_pred ccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHH
Q 001974 885 VMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNV 964 (988)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ev 964 (988)
.. .. ...... .......+...+.++.+++.+||+.||++|||++|+
T Consensus 221 ~~-~~----~~~~~~-----------------------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 266 (289)
T 4fvq_A 221 AL-DS----QRKLQF-----------------------------YEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAI 266 (289)
T ss_dssp TS-CH----HHHHHH-----------------------------HHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHH
T ss_pred cc-ch----HHHHHH-----------------------------hhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 21 10 000000 000111122445678999999999999999999999
Q ss_pred HHHHHHHHHH
Q 001974 965 VHELQSVKNA 974 (988)
Q Consensus 965 l~~L~~i~~~ 974 (988)
++.|+++...
T Consensus 267 l~~l~~l~~p 276 (289)
T 4fvq_A 267 IRDLNSLFTP 276 (289)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHhcCC
Confidence 9999988653
No 123
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.5e-40 Score=358.83 Aligned_cols=276 Identities=24% Similarity=0.404 Sum_probs=257.9
Q ss_pred cCCccccCCCCCCCCCce--eeeeEEeCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCEEEcCC-CcccccCCccc
Q 001974 4 HDPQGILNSWNDSGHFCE--WKGITCGLRH--RRVTVLNLRSKGLSG--SLSPYIGNLSFLREINLMN-NSIQGEIPREF 76 (988)
Q Consensus 4 ~~~~~~~~~w~~~~~~c~--~~~v~c~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~ 76 (988)
.||. .+++|..+++||. |.||+|+..+ ++|+.|+|+++++++ .+|+.++.+++|++|+|++ |++++.+|..|
T Consensus 19 ~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l 97 (313)
T 1ogq_A 19 GNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97 (313)
T ss_dssp TCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG
T ss_pred CCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH
Confidence 4776 8999998899998 9999998665 899999999999999 8999999999999999995 99999999999
Q ss_pred CCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCC-ccc
Q 001974 77 GRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLT-SLE 155 (988)
Q Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~ 155 (988)
+.+++|++|+|++|++++.+|..|+.+++|++|+|++|++++.+|..|.++++|++|+|++|++++.+|..|..++ +|+
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999989999999998 999
Q ss_pred eeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceecccc
Q 001974 156 SISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHN 235 (988)
Q Consensus 156 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N 235 (988)
+|++++|++++..|..|..++ |++|+|++|++++..|..+..+++|+.|+|++|++.+.+|. +..+++|++|+|++|
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNN 254 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSS
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCC
Confidence 999999999989999999998 99999999999999999999999999999999999865555 457899999999999
Q ss_pred ccccccCcccccCCcccEEEeccccccCcccccccCCccccEEeccccc
Q 001974 236 FFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNN 284 (988)
Q Consensus 236 ~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 284 (988)
++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 999999999999999999999999999888875 788889999998887
No 124
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=6.7e-40 Score=362.33 Aligned_cols=274 Identities=21% Similarity=0.374 Sum_probs=198.3
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCe---EEEEEEeecc--ccchhHHHHHHHHHHHhcCCCCceEEEeeccccc
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGT---IVAIKVFNLQ--RHGASKSFLAECKALKNIRHRNLVKVITSCSSID 733 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~---~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 733 (988)
....++|++.+.||+|+||.||+|++..+++ .||||+++.. .....+.+.+|++++++++||||+++++++....
T Consensus 19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 98 (323)
T 3qup_A 19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR 98 (323)
T ss_dssp BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence 3456789999999999999999999876665 8999999754 3344578999999999999999999999975431
Q ss_pred cc-CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 734 FQ-GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 734 ~~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
.. .....++||||+++|+|.+++........ ...+++.+++.++.|++.||+|||+. +|+||||||+||++
T Consensus 99 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~-----~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli 170 (323)
T 3qup_A 99 AKGRLPIPMVILPFMKHGDLHAFLLASRIGEN-----PFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCML 170 (323)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred cccCCCccEEEEEeccCCcHHHHHHhhhcccc-----ccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEE
Confidence 11 11123899999999999999854321100 02589999999999999999999999 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDL 891 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~ 891 (988)
++++.+||+|||+++......... ......+++.|+|||.+.+..++.++|||||||++|||++ |+.||......+
T Consensus 171 ~~~~~~kl~Dfg~a~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~- 247 (323)
T 3qup_A 171 AEDMTVCVADFGLSRKIYSGDYYR--QGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE- 247 (323)
T ss_dssp CTTSCEEECCCCC-------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG-
T ss_pred cCCCCEEEeecccccccccccccc--ccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH-
Confidence 999999999999998654433211 1223347889999999999999999999999999999999 999987432110
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSV 971 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 971 (988)
. .... ........+..++.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 248 -~---~~~~---------------------------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 296 (323)
T 3qup_A 248 -I---YNYL---------------------------IGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296 (323)
T ss_dssp -H---HHHH---------------------------HTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred -H---HHHH---------------------------hcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 0 0000 00011122346778899999999999999999999999999998
Q ss_pred HHH
Q 001974 972 KNA 974 (988)
Q Consensus 972 ~~~ 974 (988)
.+.
T Consensus 297 l~~ 299 (323)
T 3qup_A 297 LGH 299 (323)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 125
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=363.20 Aligned_cols=252 Identities=22% Similarity=0.255 Sum_probs=198.9
Q ss_pred CceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceEEEEeec
Q 001974 668 THLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKALVYEFM 747 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~ 747 (988)
.+.||+|+||.||+|++..+|+.||+|+++.......+.+.+|++++++++||||+++++++. ..+..++||||+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~lv~E~~ 168 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE-----SKNDIVLVMEYV 168 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEEEEEEECC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEE-----ECCEEEEEEeCC
Confidence 568999999999999999899999999998765556678999999999999999999999964 347899999999
Q ss_pred cccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee--CCCCcEEEeeecc
Q 001974 748 TNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL--DNDMIAHVGDFGL 825 (988)
Q Consensus 748 ~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll--~~~~~~kL~DfG~ 825 (988)
++++|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||++ +.++.+||+|||+
T Consensus 169 ~~~~L~~~l~~~~----------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~ 235 (373)
T 2x4f_A 169 DGGELFDRIIDES----------YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGL 235 (373)
T ss_dssp TTCEEHHHHHHTG----------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSS
T ss_pred CCCcHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCC
Confidence 9999998885432 3689999999999999999999999 99999999999999 6778999999999
Q ss_pred cccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhhh
Q 001974 826 ARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDHV 905 (988)
Q Consensus 826 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 905 (988)
++........ ....||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......
T Consensus 236 a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~-----~~~~~~------ 299 (373)
T 2x4f_A 236 ARRYKPREKL-----KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND-----AETLNN------ 299 (373)
T ss_dssp CEECCTTCBC-----CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH------
T ss_pred ceecCCcccc-----ccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH------
Confidence 9876543221 224589999999999999999999999999999999999999863211 111111
Q ss_pred hhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH--HHHHH
Q 001974 906 IDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH--ELQSV 971 (988)
Q Consensus 906 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 971 (988)
+......... .....+++++.+++.+||+.||++|||++|+++ .+...
T Consensus 300 --i~~~~~~~~~----------------~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~ 349 (373)
T 2x4f_A 300 --ILACRWDLED----------------EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH 349 (373)
T ss_dssp --HHHTCCCSCS----------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred --HHhccCCCCh----------------hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence 0000000000 011246778999999999999999999999987 44443
No 126
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=5.5e-40 Score=360.58 Aligned_cols=267 Identities=22% Similarity=0.348 Sum_probs=200.5
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+++.||||+++.... .....+.+|+.++++++||||+++++++... ...+.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~~ 89 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAE-TPAGP 89 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEE-ETTEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeecc-CCCCc
Confidence 4689999999999999999999988999999999975432 2345788999999999999999999987643 11223
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~ 155 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHTE-----------GPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAV 155 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCE
T ss_pred ccEEEEecCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCE
Confidence 459999999999999998643 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||+++........ ........||+.|+|||++.+..++.++|||||||++|||++|+.||..... .....
T Consensus 156 kl~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~-----~~~~~ 229 (311)
T 3ork_A 156 KVMDFGIARAIADSGNS-VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP-----VSVAY 229 (311)
T ss_dssp EECCCSCC-------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHH
T ss_pred EEeeccCcccccccccc-cccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh-----HHHHH
Confidence 99999999865443221 1112234689999999999999999999999999999999999999863211 11111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH-HHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVV-HELQSVKN 973 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl-~~L~~i~~ 973 (988)
....... . ........++.++.+++.+||+.||++||++.+++ ..+.++..
T Consensus 230 ~~~~~~~--------~----------------~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 281 (311)
T 3ork_A 230 QHVREDP--------I----------------PPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 281 (311)
T ss_dssp HHHHCCC--------C----------------CHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred HHhcCCC--------C----------------CcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence 1000000 0 00011224678899999999999999999666654 45655543
No 127
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=4.9e-39 Score=364.51 Aligned_cols=256 Identities=20% Similarity=0.256 Sum_probs=196.1
Q ss_pred hCCCCCC-ceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSST-HLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~-~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|.+. +.||+|+||+||+|.+..+++.||||+++. ...+.+|+.++.+. +||||+++++++... +.+...
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~ 133 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 133 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcE
Confidence 3457666 689999999999999999999999999863 24677888887554 899999999987542 334567
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC---CC
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN---DM 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~ 816 (988)
.++||||+++|+|.+++..... ..+++.+++.|+.||+.||+|||+. +|+||||||+||+++. ++
T Consensus 134 ~~lv~E~~~gg~L~~~l~~~~~---------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~ 201 (400)
T 1nxk_A 134 LLIVMECLDGGELFSRIQDRGD---------QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNA 201 (400)
T ss_dssp EEEEEECCCSEEHHHHHHCC------------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTC
T ss_pred EEEEEEeCCCCcHHHHHHHhCC---------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCc
Confidence 8999999999999999976432 3589999999999999999999998 9999999999999997 78
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcc--hH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN--LH 894 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~--~~ 894 (988)
.+||+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......... ..
T Consensus 202 ~~kl~DFG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~ 276 (400)
T 1nxk_A 202 ILKLTDFGFAKETTSHNS-----LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK 276 (400)
T ss_dssp CEEECCCTTCEECC----------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHH
T ss_pred cEEEEecccccccCCCCc-----cccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHH
Confidence 999999999986543222 12345899999999999999999999999999999999999999643221110 10
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.... .. ...... .....++.++.+++.+||+.||++|||++|+++.
T Consensus 277 ~~i~----~~-------~~~~~~----------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 277 TRIR----MG-------QYEFPN----------------PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp HHHH----HT-------CCCCCT----------------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHH----cC-------cccCCC----------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000 00 000000 0112467789999999999999999999999874
No 128
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=2.1e-39 Score=356.64 Aligned_cols=279 Identities=22% Similarity=0.388 Sum_probs=205.2
Q ss_pred HHHHhhCCCCCCceeccccceeEEEEEECC---CCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 001974 657 SLFKATDGFSSTHLIGMGSFGSVYKGAFDQ---DGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSS 731 (988)
Q Consensus 657 ~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 731 (988)
++....++|.+.+.||+|+||.||+|.+.. +++.||+|+++... ....+.+.+|+.++++++||||+++++++..
T Consensus 28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 107 (313)
T 3brb_A 28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE 107 (313)
T ss_dssp TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence 334456789999999999999999998864 45689999987443 2334678999999999999999999999765
Q ss_pred ccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCee
Q 001974 732 IDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVL 811 (988)
Q Consensus 732 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 811 (988)
.........++||||+++++|.+++........ ...+++.+++.++.||+.||+|||+. +|+||||||+||+
T Consensus 108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIl 179 (313)
T 3brb_A 108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETG-----PKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCM 179 (313)
T ss_dssp -------CEEEEEECCTTCBHHHHHHHTTBTTS-----CCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEE
T ss_pred ccccCCcccEEEEecccCCCHHHHHHHhhhhcC-----CccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEE
Confidence 432223456999999999999999843221100 13689999999999999999999998 9999999999999
Q ss_pred eCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCC
Q 001974 812 LDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGD 890 (988)
Q Consensus 812 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~ 890 (988)
++.++.+||+|||+++......... ......+++.|+|||.+.+..++.++||||||+++|||++ |..||......
T Consensus 180 i~~~~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~- 256 (313)
T 3brb_A 180 LRDDMTVCVADFGLSKKIYSGDYYR--QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH- 256 (313)
T ss_dssp ECTTSCEEECSCSCC------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-
T ss_pred EcCCCcEEEeecCcceecccccccC--cccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH-
Confidence 9999999999999998654432111 1122347889999999999999999999999999999999 88998642111
Q ss_pred cchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHH
Q 001974 891 LNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQS 970 (988)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~ 970 (988)
.... . +. .......+..++.++.+++.+||+.||++|||++++++.|++
T Consensus 257 -~~~~---~-----~~----------------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~ 305 (313)
T 3brb_A 257 -EMYD---Y-----LL----------------------HGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEK 305 (313)
T ss_dssp -GHHH---H-----HH----------------------TTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred -HHHH---H-----HH----------------------cCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 0000 0 00 000112233577889999999999999999999999999999
Q ss_pred HHHHhhh
Q 001974 971 VKNALLE 977 (988)
Q Consensus 971 i~~~~~~ 977 (988)
+.+++++
T Consensus 306 l~~~lp~ 312 (313)
T 3brb_A 306 LLESLPD 312 (313)
T ss_dssp HHHHC--
T ss_pred HHHhcCC
Confidence 9887654
No 129
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.8e-39 Score=355.33 Aligned_cols=277 Identities=22% Similarity=0.360 Sum_probs=210.4
Q ss_pred hCCCCCCceeccccceeEEEEE----ECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGA----FDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~----~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
.+.|++.+.||+|+||.||+|+ ...+++.||+|+++... ....+.+.+|++++++++||||+++++++... .
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~ 96 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTED---G 96 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecC---C
Confidence 3458889999999999999999 45688999999997443 33447889999999999999999999997542 3
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
....++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 97 ~~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~ 163 (302)
T 4e5w_A 97 GNGIKLIMEFLPSGSLKEYLPKNK----------NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEH 163 (302)
T ss_dssp -CCEEEEEECCTTCBHHHHHHHHT----------TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETT
T ss_pred CceEEEEEEeCCCCcHHHHHHhcc----------ccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCC
Confidence 366899999999999999985432 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||++......... ........||..|+|||++.+..++.++||||+|+++|||++|..|+..... ..
T Consensus 164 ~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~ 236 (302)
T 4e5w_A 164 QVKIGDFGLTKAIETDKEY-YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMA------LF 236 (302)
T ss_dssp EEEECCCTTCEECCTTCCE-EECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HH
T ss_pred CEEECcccccccccCCCcc-eeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhh------HH
Confidence 9999999999876543321 1222334588899999999998999999999999999999999998642210 00
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
. .. ..+.... ..................+..+++++.+++.+||+.||++|||++|+++.|+++.
T Consensus 237 ~-~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 237 L-KM--------IGPTHGQ--MTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp H-HH--------HCSCCGG--GHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred h-hc--------cCCcccc--cCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 0 00 0000000 0000000111111122234467889999999999999999999999999999874
No 130
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=363.10 Aligned_cols=275 Identities=21% Similarity=0.380 Sum_probs=214.8
Q ss_pred hhCCCCCCceeccccceeEEEEEECC-------CCeEEEEEEeecccc-chhHHHHHHHHHHHhc-CCCCceEEEeeccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQ-------DGTIVAIKVFNLQRH-GASKSFLAECKALKNI-RHRNLVKVITSCSS 731 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~-------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~ 731 (988)
..++|.+.+.||+|+||+||+|++.. .++.||||+++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~- 145 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT- 145 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeec-
Confidence 34678999999999999999999743 346899999975432 3346789999999999 9999999999964
Q ss_pred ccccCCCceEEEEeeccccchhhhcCCCCCCCch-----hhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCC
Q 001974 732 IDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKD-----VEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLK 806 (988)
Q Consensus 732 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~-----~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 806 (988)
.++..++||||+++|+|.+++......... .......+++.+++.|+.||+.||+|||+. +|+|||||
T Consensus 146 ----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlk 218 (382)
T 3tt0_A 146 ----QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLA 218 (382)
T ss_dssp ----SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCC
T ss_pred ----cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCC
Confidence 347789999999999999999754321100 000113589999999999999999999999 99999999
Q ss_pred CCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCc
Q 001974 807 PGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDV 885 (988)
Q Consensus 807 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~ 885 (988)
|+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |..||..
T Consensus 219 p~NIll~~~~~~kL~DFG~a~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~ 296 (382)
T 3tt0_A 219 ARNVLVTEDNVMKIADFGLARDIHHIDYY--KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG 296 (382)
T ss_dssp GGGEEECTTCCEEECSCSCCCCSSCCCTT--CCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred cceEEEcCCCcEEEcccCccccccccccc--ccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999866543221 11223457889999999999999999999999999999999 9999863
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH
Q 001974 886 MFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVV 965 (988)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 965 (988)
.. ...... .+.. ......+..++.++.+++.+||+.||++|||++|++
T Consensus 297 ~~-----~~~~~~-----~~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 344 (382)
T 3tt0_A 297 VP-----VEELFK-----LLKE----------------------GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLV 344 (382)
T ss_dssp CC-----HHHHHH-----HHHT----------------------TCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CC-----HHHHHH-----HHHc----------------------CCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 21 111110 0000 001122346778899999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 001974 966 HELQSVKNALLE 977 (988)
Q Consensus 966 ~~L~~i~~~~~~ 977 (988)
+.|+++......
T Consensus 345 ~~L~~~~~~~~~ 356 (382)
T 3tt0_A 345 EDLDRIVALTSN 356 (382)
T ss_dssp HHHHHHHHHSCS
T ss_pred HHHHHHHHHHhc
Confidence 999999876433
No 131
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=2.4e-39 Score=349.82 Aligned_cols=266 Identities=25% Similarity=0.435 Sum_probs=212.2
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
....++|++.+.||+|+||.||+|.+. +++.||+|+++... ...+.+.+|++++++++||||+++++++. .+
T Consensus 9 ~v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~ 80 (279)
T 1qpc_A 9 EVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT------QE 80 (279)
T ss_dssp BCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC------SS
T ss_pred ccCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc------CC
Confidence 344578999999999999999999986 67889999987543 34578999999999999999999999854 25
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++.... ...+++.+++.++.|++.||+|||+. +|+||||||+||++++++.+
T Consensus 81 ~~~~v~e~~~~~~L~~~l~~~~---------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~ 148 (279)
T 1qpc_A 81 PIYIITEYMENGSLVDFLKTPS---------GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSC 148 (279)
T ss_dssp SCEEEEECCTTCBHHHHTTSHH---------HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCE
T ss_pred CcEEEEecCCCCCHHHHHhcCC---------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCE
Confidence 5899999999999999996432 13689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||.+........ .......++..|+|||.+.+..++.++||||||+++|||++ |+.||..... ....
T Consensus 149 kl~Dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~ 220 (279)
T 1qpc_A 149 KIADFGLARLIEDNEY---TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN-----PEVI 220 (279)
T ss_dssp EECCCTTCEECSSSCE---ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHH
T ss_pred EECCCcccccccCccc---ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH-----HHHH
Confidence 9999999986644321 11223457889999999988889999999999999999999 9999863211 0111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
. .+... .....+..++.++.+++.+||+.||++|||++++++.|+++..+...
T Consensus 221 ~-----~~~~~----------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 273 (279)
T 1qpc_A 221 Q-----NLERG----------------------YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEG 273 (279)
T ss_dssp H-----HHHTT----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred H-----HHhcc----------------------cCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccC
Confidence 0 00000 00112235678899999999999999999999999999999877554
Q ss_pred hc
Q 001974 978 AW 979 (988)
Q Consensus 978 ~~ 979 (988)
.+
T Consensus 274 ~~ 275 (279)
T 1qpc_A 274 QY 275 (279)
T ss_dssp --
T ss_pred CC
Confidence 33
No 132
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=1.3e-39 Score=379.64 Aligned_cols=259 Identities=25% Similarity=0.466 Sum_probs=212.3
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++..++..||||+++... ...+.+.+|+.++++++||||++++++|.. ++..
T Consensus 218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-----~~~~ 291 (495)
T 1opk_A 218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPF 291 (495)
T ss_dssp CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSC
T ss_pred CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEec-----CCcE
Confidence 3466888999999999999999998889999999997543 345789999999999999999999999653 4778
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++|+|.+++..... ..+++..++.++.||+.||+|||++ +|+||||||+|||++.++.+||
T Consensus 292 ~lv~E~~~~g~L~~~l~~~~~---------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl 359 (495)
T 1opk_A 292 YIITEFMTYGNLLDYLRECNR---------QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKV 359 (495)
T ss_dssp EEEEECCTTCBHHHHHHHSCT---------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEE
T ss_pred EEEEEccCCCCHHHHHHhcCc---------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEE
Confidence 999999999999999975432 3588999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+++...... ........++..|+|||++.+..++.++|||||||++|||+| |+.||...... ..
T Consensus 360 ~DFG~a~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~------ 428 (495)
T 1opk_A 360 ADFGLSRLMTGDT---YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QV------ 428 (495)
T ss_dssp CCTTCEECCTTCC---EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GH------
T ss_pred eecccceeccCCc---eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HH------
Confidence 9999998654322 111223456789999999998899999999999999999999 99998643111 00
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
.+.+.. ......+..++.++.++|.+||+.||++|||++|+++.|+.+.
T Consensus 429 ------~~~~~~------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 429 ------YELLEK------------------DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp ------HHHHHT------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred ------HHHHHc------------------CCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 000000 0011223467888999999999999999999999999998763
No 133
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4e-39 Score=359.47 Aligned_cols=277 Identities=23% Similarity=0.340 Sum_probs=210.7
Q ss_pred HhhCCCCCCceeccccceeEEEEEE-----CCCCeEEEEEEeecc-ccchhHHHHHHHHHHHhc-CCCCceEEEeecccc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAF-----DQDGTIVAIKVFNLQ-RHGASKSFLAECKALKNI-RHRNLVKVITSCSSI 732 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~-----~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 732 (988)
...++|++.+.||+|+||.||+|++ ..+++.||+|+++.. .....+.+.+|+.+++++ +||||+++++++.
T Consensus 42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-- 119 (344)
T 1rjb_A 42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT-- 119 (344)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC--
T ss_pred cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe--
Confidence 4567899999999999999999997 345678999999743 233457899999999999 9999999999964
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCch------------hhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCe
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKD------------VEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPV 800 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~------------~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~i 800 (988)
.++..++||||+++|+|.+++......... .......+++.+++.++.||+.||+|||+. +|
T Consensus 120 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 193 (344)
T 1rjb_A 120 ---LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SC 193 (344)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred ---eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 347889999999999999999765421100 001123589999999999999999999998 99
Q ss_pred EeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-C
Q 001974 801 LHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-G 879 (988)
Q Consensus 801 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g 879 (988)
+||||||+||+++.++.+||+|||++......... .......||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus 194 vH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g 271 (344)
T 1rjb_A 194 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNY--VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLG 271 (344)
T ss_dssp EETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTS--EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred ccCCCChhhEEEcCCCcEEeCCCccCcccccCccc--eeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999866543221 12233457889999999988899999999999999999998 9
Q ss_pred CCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC
Q 001974 880 KKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM 959 (988)
Q Consensus 880 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP 959 (988)
..||....... ......... .....+..+++++.+++.+||+.||++||
T Consensus 272 ~~p~~~~~~~~-----~~~~~~~~~--------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rp 320 (344)
T 1rjb_A 272 VNPYPGIPVDA-----NFYKLIQNG--------------------------FKMDQPFYATEEIYIIMQSCWAFDSRKRP 320 (344)
T ss_dssp CCSSTTCCCSH-----HHHHHHHTT--------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred CCCcccCCcHH-----HHHHHHhcC--------------------------CCCCCCCCCCHHHHHHHHHHcCCCchhCc
Confidence 99986432110 000000000 00112235678899999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 001974 960 SITNVVHELQSVKNALLE 977 (988)
Q Consensus 960 s~~evl~~L~~i~~~~~~ 977 (988)
|++|+++.|+.+.+...+
T Consensus 321 s~~~l~~~l~~~~~~~~~ 338 (344)
T 1rjb_A 321 SFPNLTSFLGCQLADAEE 338 (344)
T ss_dssp CHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998765443
No 134
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=4.3e-39 Score=357.55 Aligned_cols=260 Identities=22% Similarity=0.331 Sum_probs=200.5
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccc------
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDF------ 734 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------ 734 (988)
.++|++.+.||+|+||.||+|++..+|+.||||+++... ....+.+.+|++++++++||||+++++++.....
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 356899999999999999999999899999999997543 3345789999999999999999999998754310
Q ss_pred ----------------------------------------------cCCCceEEEEeeccccchhhhcCCCCCCCchhhh
Q 001974 735 ----------------------------------------------QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEI 768 (988)
Q Consensus 735 ----------------------------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~ 768 (988)
......++||||+++++|.+++......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~------ 158 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL------ 158 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG------
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc------
Confidence 1123479999999999999999765421
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccc--------eec
Q 001974 769 EIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQ--------SCS 840 (988)
Q Consensus 769 ~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~--------~~~ 840 (988)
...++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.......... ...
T Consensus 159 --~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~ 233 (332)
T 3qd2_B 159 --EDREHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATH 233 (332)
T ss_dssp --GGSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CC
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccc
Confidence 3467778999999999999999998 999999999999999999999999999987654321111 112
Q ss_pred cccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchh
Q 001974 841 VGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDW 920 (988)
Q Consensus 841 ~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 920 (988)
....||+.|+|||++.+..++.++|||||||++|||++|..|+... ......... ... .
T Consensus 234 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~------------~~~~~~~~~---~~~----~-- 292 (332)
T 3qd2_B 234 TGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER------------VRIITDVRN---LKF----P-- 292 (332)
T ss_dssp CSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH------------HHHHHHHHT---TCC----C--
T ss_pred cccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH------------HHHHHHhhc---cCC----C--
Confidence 3356999999999999999999999999999999999998773210 000000000 000 0
Q ss_pred hhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 921 DATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
......++++.+++.+||+.||++|||++|+++
T Consensus 293 -------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 293 -------------LLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp -------------HHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred -------------cccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 001134566789999999999999999999986
No 135
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=2.8e-39 Score=347.76 Aligned_cols=255 Identities=22% Similarity=0.332 Sum_probs=205.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|++ .++.||||+++... ....+.+.+|+.++++++||||+++++++... ....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 83 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSP---PAPH 83 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTT---TSSS
T ss_pred HHHhHHHHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccC---CCCC
Confidence 46799999999999999999999 58999999997543 23346799999999999999999999997532 2367
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC--eEeccCCCCCeeeCCCCc
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP--VLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~~~~ 817 (988)
.++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~~---------~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~ 151 (271)
T 3kmu_A 84 PTLITHWMPYGSLYNVLHEGTN---------FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMT 151 (271)
T ss_dssp CEEEEECCTTCBHHHHHHSCSS---------CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSC
T ss_pred eEeeecccCCCcHHHHHhhccc---------CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcc
Confidence 8999999999999999976542 2589999999999999999999998 7 999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCC---ccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVST---NGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
++|+|||++..... ....||+.|+|||++.+..++. ++|||||||++|||++|+.||......
T Consensus 152 ~~l~~~~~~~~~~~---------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----- 217 (271)
T 3kmu_A 152 ARISMADVKFSFQS---------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNM----- 217 (271)
T ss_dssp EEEEGGGSCCTTSC---------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHH-----
T ss_pred eeEEeccceeeecc---------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChH-----
Confidence 99999988764222 1235899999999988766554 799999999999999999998632111
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKN 973 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 973 (988)
......... ......+..+++++.+++.+||+.||++|||++|+++.|+++.+
T Consensus 218 ~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 218 EIGMKVALE--------------------------GLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HHHHHHHHS--------------------------CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhc--------------------------CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 110000000 00111223577889999999999999999999999999998854
No 136
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3.1e-39 Score=346.58 Aligned_cols=259 Identities=24% Similarity=0.404 Sum_probs=210.2
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|.+. +++.||+|+++.... ..+.+.+|++++++++||||+++++++. .++..
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 78 (267)
T 3t9t_A 6 DPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPI 78 (267)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSC
T ss_pred chhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCCe
Confidence 3467899999999999999999996 788999999975433 3478999999999999999999999964 34778
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 79 ~lv~e~~~~~~L~~~~~~~~----------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl 145 (267)
T 3t9t_A 79 CLVTEFMEHGCLSDYLRTQR----------GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKV 145 (267)
T ss_dssp EEEECCCTTCBHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEE
T ss_pred EEEEeCCCCCcHHHHHhhCc----------ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEE
Confidence 99999999999999996543 3588999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||.+........ .......++..|+|||++.+..++.++||||+|+++|||++ |+.||..... .....
T Consensus 146 ~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~- 216 (267)
T 3t9t_A 146 SDFGMTRFVLDDQY---TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVE- 216 (267)
T ss_dssp CCTTGGGGBCCHHH---HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHH-
T ss_pred cccccccccccccc---cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH-----HHHHH-
Confidence 99999986543211 11223457889999999988889999999999999999999 8999863211 11110
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
.+.... ....+..++..+.+++.+||+.||++|||++|+++.|+++.++
T Consensus 217 ----~i~~~~----------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 217 ----DISTGF----------------------RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp ----HHHTTC----------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----HHhcCC----------------------cCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 010000 0011224567899999999999999999999999999999763
No 137
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=6.4e-39 Score=370.04 Aligned_cols=203 Identities=26% Similarity=0.278 Sum_probs=169.1
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhcCCCCceEEEeeccccc-ccCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNIRHRNLVKVITSCSSID-FQGN 737 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~ 737 (988)
..++|++.+.||+|+||+||+|.+..+++.||||++... .....+.+.+|+.+++.++||||+++++++.... ....
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 357899999999999999999999999999999999743 3344567889999999999999999999975432 1334
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++||||++ +++.+.+.. .+++.++..++.||+.||+|||+. +|+||||||+|||++.++.
T Consensus 140 ~~~~lv~E~~~-~~l~~~~~~-------------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~ 202 (464)
T 3ttj_A 140 QDVYLVMELMD-ANLCQVIQM-------------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCT 202 (464)
T ss_dssp CEEEEEEECCS-EEHHHHHTS-------------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSC
T ss_pred CeEEEEEeCCC-CCHHHHHhh-------------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCC
Confidence 56899999995 456666632 478899999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
+||+|||+|+....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 203 ~kl~DFG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g 265 (464)
T 3ttj_A 203 LKILDFGLARTAGTSFM-----MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPG 265 (464)
T ss_dssp EEECCCCCC-----CCC-----C----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EEEEEEEeeeecCCCcc-----cCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999986554322 2235699999999999999999999999999999999999999863
No 138
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=2.3e-39 Score=352.15 Aligned_cols=267 Identities=22% Similarity=0.366 Sum_probs=211.0
Q ss_pred HHHhhCCCCCCc-eeccccceeEEEEEE--CCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 001974 658 LFKATDGFSSTH-LIGMGSFGSVYKGAF--DQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSI 732 (988)
Q Consensus 658 l~~~~~~y~~~~-~lg~G~~g~Vy~a~~--~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 732 (988)
+....++|.+.+ .||+|+||.||+|.+ ..+++.||||+++... ....+.+.+|++++++++||||+++++++.
T Consensus 11 ~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-- 88 (291)
T 1xbb_A 11 VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-- 88 (291)
T ss_dssp CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE--
T ss_pred eeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC--
Confidence 334456788888 999999999999954 5567899999997443 233567999999999999999999999862
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
.+..++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||++
T Consensus 89 ----~~~~~lv~e~~~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~ 150 (291)
T 1xbb_A 89 ----AESWMLVMEMAELGPLNKYLQQNR-----------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLL 150 (291)
T ss_dssp ----SSSEEEEEECCTTEEHHHHHHHCT-----------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred ----CCCcEEEEEeCCCCCHHHHHHhCc-----------CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEE
Confidence 367899999999999999996542 589999999999999999999999 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDL 891 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~ 891 (988)
+.++.+||+|||++........... ......+++.|+|||++.+..++.++||||||+++|||++ |+.||......
T Consensus 151 ~~~~~~kl~Dfg~~~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-- 227 (291)
T 1xbb_A 151 VTQHYAKISDFGLSKALRADENYYK-AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS-- 227 (291)
T ss_dssp EETTEEEECCCTTCEECCTTCSEEE-C----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--
T ss_pred eCCCcEEEccCCcceeeccCCCccc-ccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--
Confidence 9999999999999986654332111 1122346789999999988889999999999999999999 99998642110
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSV 971 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 971 (988)
... ..+.. ......+..++.++.+++.+||+.||++|||++|+++.|+++
T Consensus 228 ---~~~-----~~~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 228 ---EVT-----AMLEK----------------------GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp ---HHH-----HHHHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred ---HHH-----HHHHc----------------------CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 000 00000 000112335778899999999999999999999999999999
Q ss_pred HHHhhh
Q 001974 972 KNALLE 977 (988)
Q Consensus 972 ~~~~~~ 977 (988)
......
T Consensus 278 ~~~~~~ 283 (291)
T 1xbb_A 278 YYDVVN 283 (291)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 877654
No 139
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=4.3e-39 Score=347.78 Aligned_cols=266 Identities=22% Similarity=0.326 Sum_probs=207.3
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
+.++|++.+.||+|+||.||+|++..+++.||+|++.... ......+.+|+.++++++||||+++++++. ++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 81 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----DA 81 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CS
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe-----cC
Confidence 3567999999999999999999999999999999986432 223467889999999999999999999964 44
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 82 ~~~~lv~e~~~~~~l~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~ 147 (279)
T 3fdn_A 82 TRVYLILEYAPLGTVYRELQKL-----------SKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGE 147 (279)
T ss_dssp SEEEEEECCCTTEEHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSC
T ss_pred CEEEEEEecCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCC
Confidence 7899999999999999998543 3689999999999999999999998 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||++....... .....|++.|+|||.+.+..++.++||||+|+++|+|++|+.||.... .....
T Consensus 148 ~~l~Dfg~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~ 216 (279)
T 3fdn_A 148 LKIADFGWSVHAPSSR------RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT-----YQETY 216 (279)
T ss_dssp EEECSCCEESCC--------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS-----HHHHH
T ss_pred EEEEeccccccCCccc------ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc-----HHHHH
Confidence 9999999986543322 123458999999999999999999999999999999999999986321 11100
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
. .+.......+..++..+.+++.+||+.||++|||++|+++.-. +......
T Consensus 217 ~----------------------------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~-~~~~~~~ 267 (279)
T 3fdn_A 217 K----------------------------RISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPW-ITANSSK 267 (279)
T ss_dssp H----------------------------HHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHH-HHHHCSS
T ss_pred H----------------------------HHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCcc-ccCCccC
Confidence 0 0011111223346778999999999999999999999998522 2233333
Q ss_pred hcccCCcc
Q 001974 978 AWNCTGEE 985 (988)
Q Consensus 978 ~~~~~~~~ 985 (988)
...|+.++
T Consensus 268 ~~~~~~~~ 275 (279)
T 3fdn_A 268 PSNCQNKE 275 (279)
T ss_dssp CCCC----
T ss_pred cccccccc
Confidence 44444443
No 140
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=9.4e-39 Score=366.64 Aligned_cols=209 Identities=26% Similarity=0.319 Sum_probs=172.7
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+.+|++++++++||||+++++++....+....
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 357899999999999999999999999999999999643 223446789999999999999999999997655444447
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+ +++|.+++.... .+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~~-----------~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~ 168 (432)
T 3n9x_A 104 ELYIVLEIA-DSDLKKLFKTPI-----------FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSV 168 (432)
T ss_dssp CEEEEEECC-SEEHHHHHHSSC-----------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred eEEEEEecC-CcCHHHHHhccC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCE
Confidence 799999999 579999997543 589999999999999999999999 99999999999999999999
Q ss_pred EEeeeccccccccccccc------------------ceeccccccccccccCccc-CCCCCCCccchHHHHHHHHHHHhC
Q 001974 819 HVGDFGLARVRQEVSNLT------------------QSCSVGVRGTIGYAAPEYG-LGSEVSTNGDIYSYGILLLEMVTG 879 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~sDvwslG~vl~elltg 879 (988)
||+|||+|+......... .......+||+.|+|||++ ....++.++||||+||++|||++|
T Consensus 169 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g 248 (432)
T 3n9x_A 169 KVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNM 248 (432)
T ss_dssp EECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTT
T ss_pred EEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhc
Confidence 999999998765432110 0112345799999999985 556799999999999999999997
Q ss_pred CCCCC
Q 001974 880 KKPTD 884 (988)
Q Consensus 880 ~~p~~ 884 (988)
..||.
T Consensus 249 ~~p~~ 253 (432)
T 3n9x_A 249 LQSHI 253 (432)
T ss_dssp CTTTC
T ss_pred ccccc
Confidence 66654
No 141
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.1e-39 Score=350.40 Aligned_cols=266 Identities=24% Similarity=0.400 Sum_probs=209.5
Q ss_pred CCCCCceeccccceeEEEEEECCCCe---EEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 664 GFSSTHLIGMGSFGSVYKGAFDQDGT---IVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 664 ~y~~~~~lg~G~~g~Vy~a~~~~~~~---~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.|...+.||+|+||+||+|++..+++ .||+|++..... ...+.+.+|+.++++++||||+++++++.. .+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCC
Confidence 45667899999999999999754443 799999864333 345678999999999999999999999643 2344
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+.+|+|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~~----------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~k 164 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSPQ----------RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVK 164 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCTT----------CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEE
T ss_pred cEEEEecccCCCHHHHHhccc----------cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEE
Confidence 589999999999999997643 3678999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||+++.................+++.|+|||.+.+..++.++||||||+++|||++|..|+...... .......
T Consensus 165 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~-~~~~~~~-- 241 (298)
T 3pls_A 165 VADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP-FDLTHFL-- 241 (298)
T ss_dssp ECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG-GGHHHHH--
T ss_pred eCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH-HHHHHHh--
Confidence 9999999865443322222333456889999999999999999999999999999999965554321111 0000000
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
. .......+..++.++.+++.+||+.||++|||++|+++.|+++.+++..
T Consensus 242 --~--------------------------~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~ 291 (298)
T 3pls_A 242 --A--------------------------QGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG 291 (298)
T ss_dssp --H--------------------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred --h--------------------------cCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 0 0001112335677899999999999999999999999999999888654
No 142
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=358.32 Aligned_cols=262 Identities=23% Similarity=0.403 Sum_probs=204.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEE----EEEEeecc-ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIV----AIKVFNLQ-RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~v----avK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
.++|++.+.||+|+||.||+|++..+++.| |+|.+... .....+.+.+|+.++++++||||+++++++..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----- 88 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES-----
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec-----
Confidence 467999999999999999999998777654 66666432 33455789999999999999999999999653
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
+..++|+||+++|+|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 89 -~~~~~v~~~~~~g~L~~~l~~~~----------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~ 154 (327)
T 3lzb_A 89 -STVQLITQLMPFGCLLDYVREHK----------DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQ 154 (327)
T ss_dssp -SSEEEEECCCSSCBHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETT
T ss_pred -CCceEEEEecCCCcHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCC
Confidence 34789999999999999987543 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+ ...
T Consensus 155 ~~kL~DfG~a~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~ 230 (327)
T 3lzb_A 155 HVKITDFGLAKLLGAEEKE--YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISS 230 (327)
T ss_dssp EEEECCTTC------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHH
T ss_pred CEEEccCcceeEccCcccc--ccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHH
Confidence 9999999999876443221 11223457889999999999999999999999999999999 999987432111 100
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
. +. .......+..++.++.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 231 ~------------~~------------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 280 (327)
T 3lzb_A 231 I------------LE------------------KGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp H------------HH------------------TTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred H------------HH------------------cCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence 0 00 00011223356778999999999999999999999999999997543
Q ss_pred h
Q 001974 976 L 976 (988)
Q Consensus 976 ~ 976 (988)
.
T Consensus 281 ~ 281 (327)
T 3lzb_A 281 Q 281 (327)
T ss_dssp H
T ss_pred C
Confidence 3
No 143
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=359.04 Aligned_cols=243 Identities=22% Similarity=0.341 Sum_probs=203.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--------chhHHHHHHHHHHHhcCCCCceEEEeeccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--------GASKSFLAECKALKNIRHRNLVKVITSCSSID 733 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 733 (988)
.++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+.++++++||||+++++++.
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~--- 99 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE--- 99 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE---
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe---
Confidence 4679999999999999999999999999999999975431 12346778999999999999999999954
Q ss_pred ccCCCceEEEEeecccc-chhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 734 FQGNDFKALVYEFMTNG-SLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 734 ~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
.++..++||||+.+| +|.+++.... .+++..++.|+.||+.||+|||+. +|+||||||+||++
T Consensus 100 --~~~~~~lv~e~~~~g~~l~~~~~~~~-----------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll 163 (335)
T 3dls_A 100 --NQGFFQLVMEKHGSGLDLFAFIDRHP-----------RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVI 163 (335)
T ss_dssp --CSSEEEEEEECCTTSCBHHHHHHTCC-----------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred --eCCEEEEEEEeCCCCccHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEE
Confidence 457899999999776 9999997653 589999999999999999999999 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDL 891 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 891 (988)
+.++.+||+|||+++........ ....||+.|+|||++.+..+ +.++|||||||++|||++|+.||......
T Consensus 164 ~~~~~~kL~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-- 236 (335)
T 3dls_A 164 AEDFTIKLIDFGSAAYLERGKLF-----YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-- 236 (335)
T ss_dssp CTTSCEEECCCTTCEECCTTCCB-----CEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG--
T ss_pred cCCCcEEEeecccceECCCCCce-----eccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH--
Confidence 99999999999999876543322 22458999999999988877 78999999999999999999998632110
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
... ....+..++.++.+++.+||+.||++|||++|+++.
T Consensus 237 -----------------~~~--------------------~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 -----------------VEA--------------------AIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp -----------------TTT--------------------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred -----------------Hhh--------------------ccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000 011123467789999999999999999999999874
No 144
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.2e-39 Score=359.59 Aligned_cols=272 Identities=21% Similarity=0.222 Sum_probs=204.0
Q ss_pred HHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc-----ccchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 001974 658 LFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ-----RHGASKSFLAECKALKNIRHRNLVKVITSCSSI 732 (988)
Q Consensus 658 l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 732 (988)
+....++|++.+.||+|+||.||+|++..+++.||+|++... .....+.+.+|++++++++||||+++++++.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-- 98 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE-- 98 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE--
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc--
Confidence 344567899999999999999999999999999999998643 2344578999999999999999999999964
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCc-----------------------------hhhhHhhcCCHHHHHHHHH
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQK-----------------------------DVEIEIQKLTLLQRINIAI 783 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~-----------------------------~~~~~~~~l~~~~~~~i~~ 783 (988)
+++..++||||+++|+|.+++........ ........+++..++.++.
T Consensus 99 ---~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (345)
T 3hko_A 99 ---DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMR 175 (345)
T ss_dssp ---CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHH
T ss_pred ---cCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHH
Confidence 45789999999999999999852110000 0000012356778899999
Q ss_pred HHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC--cEEEeeecccccccccccccceeccccccccccccCcccCC--CC
Q 001974 784 DVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM--IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG--SE 859 (988)
Q Consensus 784 ~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~--~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~ 859 (988)
||+.||+|||+. +|+||||||+||+++.++ .+||+|||+++.................||+.|+|||++.+ ..
T Consensus 176 qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~ 252 (345)
T 3hko_A 176 QIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES 252 (345)
T ss_dssp HHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSC
T ss_pred HHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCC
Confidence 999999999999 999999999999998776 89999999998664433222222334569999999999875 67
Q ss_pred CCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccch
Q 001974 860 VSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIEC 939 (988)
Q Consensus 860 ~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (988)
++.++|||||||++|||++|+.||...... ..... +......... .....+
T Consensus 253 ~~~~~DiwslG~il~el~~g~~pf~~~~~~-----~~~~~--------~~~~~~~~~~----------------~~~~~~ 303 (345)
T 3hko_A 253 YGPKCDAWSAGVLLHLLLMGAVPFPGVNDA-----DTISQ--------VLNKKLCFEN----------------PNYNVL 303 (345)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHH--------HHHCCCCTTS----------------GGGGGS
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCCCCCChH-----HHHHH--------HHhcccccCC----------------cccccC
Confidence 899999999999999999999998642111 11111 1111110000 011245
Q ss_pred hHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 940 PISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 940 ~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
++++.+++.+||+.||++|||+.|+++
T Consensus 304 ~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 304 SPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp CHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 778999999999999999999999986
No 145
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=360.37 Aligned_cols=273 Identities=19% Similarity=0.241 Sum_probs=205.1
Q ss_pred hCCCCCCceeccccceeEEEEEECC---CCeEEEEEEeeccccc-----------hhHHHHHHHHHHHhcCCCCceEEEe
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQ---DGTIVAIKVFNLQRHG-----------ASKSFLAECKALKNIRHRNLVKVIT 727 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~---~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~~~~ 727 (988)
.++|++.+.||+|+||.||+|++.. +++.||+|++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 4679999999999999999999986 7789999998754321 1234677888999999999999999
Q ss_pred ecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCC
Q 001974 728 SCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKP 807 (988)
Q Consensus 728 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 807 (988)
++... +.++...++||||+ +++|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||
T Consensus 116 ~~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~-----------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 179 (345)
T 2v62_A 116 SGLTE-FKGRSYRFMVMERL-GIDLQKISGQN-----------GTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKA 179 (345)
T ss_dssp EEEEE-SSSCEEEEEEEECE-EEEHHHHCBGG-----------GBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred ccccc-cCCCcEEEEEEecc-CCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCH
Confidence 97653 34467899999999 99999998754 2689999999999999999999999 999999999
Q ss_pred CCeeeCCCC--cEEEeeecccccccccccc---cceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCC
Q 001974 808 GNVLLDNDM--IAHVGDFGLARVRQEVSNL---TQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKP 882 (988)
Q Consensus 808 ~NIll~~~~--~~kL~DfG~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p 882 (988)
+||+++.++ .+||+|||+++........ .........||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 180 ~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p 259 (345)
T 2v62_A 180 ANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLP 259 (345)
T ss_dssp GGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 999999887 9999999999866443211 11112345699999999999999999999999999999999999999
Q ss_pred CCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHH
Q 001974 883 TDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSIT 962 (988)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ 962 (988)
|.......... ..........+...+. .......++.++.+++.+||+.||++|||++
T Consensus 260 f~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ 317 (345)
T 2v62_A 260 WEQNLKDPVAV-QTAKTNLLDELPQSVL---------------------KWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQ 317 (345)
T ss_dssp TGGGTTCHHHH-HHHHHHHHHTTTHHHH---------------------HHSCTTSCCHHHHHHHHHHHTCCTTCCCCHH
T ss_pred ccccccccHHH-HHHHHhhcccccHHHH---------------------hhccccccHHHHHHHHHHHhhcCcccCCCHH
Confidence 86322211111 1111111111100000 0001125778899999999999999999999
Q ss_pred HHHHHHHHHH
Q 001974 963 NVVHELQSVK 972 (988)
Q Consensus 963 evl~~L~~i~ 972 (988)
++++.|+++.
T Consensus 318 ~l~~~L~~~~ 327 (345)
T 2v62_A 318 ALKKILNPHG 327 (345)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHHhccC
Confidence 9999998754
No 146
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=4e-39 Score=365.56 Aligned_cols=286 Identities=18% Similarity=0.209 Sum_probs=206.2
Q ss_pred HhhCCCCCCceeccc--cceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 001974 660 KATDGFSSTHLIGMG--SFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G--~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
...++|++.+.||+| +||+||+|++..+++.||||+++... ....+.+.+|+.+++.++||||+++++++.
T Consensus 22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~----- 96 (389)
T 3gni_B 22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFI----- 96 (389)
T ss_dssp CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEE-----
Confidence 345789999999999 99999999999999999999997543 233467888999999999999999999965
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
.++..++||||+++|+|.+++..... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 97 ~~~~~~lv~e~~~~~~L~~~l~~~~~---------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~ 164 (389)
T 3gni_B 97 ADNELWVVTSFMAYGSAKDLICTHFM---------DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVD 164 (389)
T ss_dssp ETTEEEEEEECCTTCBHHHHHHHTCT---------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred ECCEEEEEEEccCCCCHHHHHhhhcc---------cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCC
Confidence 34789999999999999999865432 3589999999999999999999999 99999999999999999
Q ss_pred CcEEEeeecccccccccccc---cceeccccccccccccCcccCC--CCCCCccchHHHHHHHHHHHhCCCCCCccccCC
Q 001974 816 MIAHVGDFGLARVRQEVSNL---TQSCSVGVRGTIGYAAPEYGLG--SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGD 890 (988)
Q Consensus 816 ~~~kL~DfG~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 890 (988)
+.+||+|||.+......... .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+
T Consensus 165 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 244 (389)
T 3gni_B 165 GKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ 244 (389)
T ss_dssp CCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTT
T ss_pred CCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 99999999998754332111 1111223468999999999987 678999999999999999999999997532221
Q ss_pred cchHHHHHHHHhhhhhhhhccccccC---------------cchh-hh--hhHHHHhhhhhccccchhHHHHHHhhcccC
Q 001974 891 LNLHNYARTALLDHVIDIVDPILIND---------------VEDW-DA--TNKQRLRQAKINGKIECPISMVRIGVACSV 952 (988)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~d~~l~~~---------------~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 952 (988)
. ...... .......+...... ..+. .. ................+++++.+++.+||+
T Consensus 245 ~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~ 319 (389)
T 3gni_B 245 M-LLEKLN----GTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQ 319 (389)
T ss_dssp H-HHHC------------------------------------------------------------CCHHHHHHHHHHTC
T ss_pred H-HHHHhc----CCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhh
Confidence 1 100000 00000000000000 0000 00 000000001111234567889999999999
Q ss_pred cCCCCCCCHHHHHHH
Q 001974 953 ESPQDRMSITNVVHE 967 (988)
Q Consensus 953 ~dP~~RPs~~evl~~ 967 (988)
.||++|||++|+++.
T Consensus 320 ~dP~~Rpta~ell~h 334 (389)
T 3gni_B 320 RNPDARPSASTLLNH 334 (389)
T ss_dssp SCTTTSCCHHHHTTS
T ss_pred cCcccCCCHHHHhcC
Confidence 999999999999854
No 147
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=5.2e-39 Score=353.60 Aligned_cols=286 Identities=24% Similarity=0.328 Sum_probs=191.3
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
..++|++.+.||+|+||.||+|.+..+|+.||+|+++... ....+.+.+|++++++++||||+++++++. .++.
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~ 77 (317)
T 2pmi_A 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIH-----TENK 77 (317)
T ss_dssp ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEEC-----CTTE
T ss_pred cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEE-----ECCe
Confidence 3568999999999999999999999899999999997543 234477889999999999999999999954 4578
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||++ |+|.+++........ ...+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 78 ~~lv~e~~~-~~L~~~l~~~~~~~~-----~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~k 148 (317)
T 2pmi_A 78 LTLVFEFMD-NDLKKYMDSRTVGNT-----PRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLK 148 (317)
T ss_dssp EEEEEECCC-CBHHHHHHHHHSSSC-----CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEE
T ss_pred EEEEEEecC-CCHHHHHHhcccccc-----ccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEE
Confidence 999999996 699988854321100 02588999999999999999999998 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++........ .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .......
T Consensus 149 l~Dfg~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~~~~~i~ 222 (317)
T 2pmi_A 149 LGDFGLARAFGIPVNT----FSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE--EQLKLIF 222 (317)
T ss_dssp ECCCSSCEETTSCCCC----CCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHH
T ss_pred ECcCccceecCCCccc----CCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHH
Confidence 9999999865432211 123458999999999876 46899999999999999999999998642211 1111111
Q ss_pred HHHhhhhhhhhccc--cccCcchhhhhhHHHH-hhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALLDHVIDIVDPI--LINDVEDWDATNKQRL-RQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.............. ...............+ ..........++.++.+++.+||+.||++|||++|+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 223 DIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp HHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 11000000000000 0000000000000000 00011122356778999999999999999999999876
No 148
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8e-39 Score=354.55 Aligned_cols=265 Identities=25% Similarity=0.453 Sum_probs=204.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCC----eEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDG----TIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~----~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
.++|+..+.||+|+||.||+|.+..++ ..||+|+++.... .....+.+|++++++++||||+++++++. .
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~ 117 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS-----K 117 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----S
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEe-----c
Confidence 356778899999999999999986443 4699999975432 33457899999999999999999999954 4
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
.+..++||||+++++|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 118 ~~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~ 184 (333)
T 1mqb_A 118 YKPMMIITEYMENGALDKFLREKD----------GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNL 184 (333)
T ss_dssp SSSEEEEEECCTTEEHHHHHHHTT----------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTC
T ss_pred CCCcEEEEeCCCCCcHHHHHHhCC----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCC
Confidence 578999999999999999986543 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+++......... .......+|..|+|||++.+..++.++|||||||++|||++ |+.||..... ..
T Consensus 185 ~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~ 258 (333)
T 1mqb_A 185 VCKVSDFGLSRVLEDDPEAT-YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN-----HE 258 (333)
T ss_dssp CEEECCCCC------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HH
T ss_pred cEEECCCCcchhhccccccc-cccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH-----HH
Confidence 99999999998765432211 11122346789999999998899999999999999999999 9999863211 01
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
.. ..+.. . .....+..++.++.+++.+||+.||++||+++|+++.|+++.+..
T Consensus 259 ~~-----~~~~~---~-------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 259 VM-----KAIND---G-------------------FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp HH-----HHHHT---T-------------------CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred HH-----HHHHC---C-------------------CcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 00 00000 0 001123357788999999999999999999999999999998765
Q ss_pred hh
Q 001974 976 LE 977 (988)
Q Consensus 976 ~~ 977 (988)
..
T Consensus 312 ~~ 313 (333)
T 1mqb_A 312 DS 313 (333)
T ss_dssp GG
T ss_pred hh
Confidence 44
No 149
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=7.6e-39 Score=345.52 Aligned_cols=252 Identities=21% Similarity=0.241 Sum_probs=204.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|++.+.||+|+||.||+|++..++..||+|++........+.+.+|++++++++||||+++++++. .++..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 82 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE-----DNTDIY 82 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCeEE
Confidence 456999999999999999999999899999999998666666788999999999999999999999964 457899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee---CCCCcE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL---DNDMIA 818 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~ 818 (988)
+||||+++++|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+
T Consensus 83 lv~e~~~~~~L~~~~~~~-----------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~ 148 (277)
T 3f3z_A 83 LVMELCTGGELFERVVHK-----------RVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPL 148 (277)
T ss_dssp EEEECCCSCBHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCE
T ss_pred EEEeccCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcE
Confidence 999999999999988543 3689999999999999999999999 99999999999999 788999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||++......... ....||+.|+|||++.+. ++.++||||||+++|||++|+.||...... ....
T Consensus 149 ~l~Dfg~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----~~~~ 217 (277)
T 3f3z_A 149 KLIDFGLAARFKPGKMM-----RTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDS-----EVML 217 (277)
T ss_dssp EECCCTTCEECCTTSCB-----CCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHH
T ss_pred EEEecccceeccCccch-----hccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHH-----HHHH
Confidence 99999999865543221 224589999999998664 899999999999999999999998642111 1110
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
. +.. ........ ....+++++.+++.+||+.||++|||+.|+++.
T Consensus 218 ~-~~~-------~~~~~~~~----------------~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 218 K-IRE-------GTFTFPEK----------------DWLNVSPQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp H-HHH-------CCCCCCHH----------------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred H-HHh-------CCCCCCch----------------hhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0 000 00000000 012467789999999999999999999999863
No 150
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.2e-38 Score=355.47 Aligned_cols=275 Identities=23% Similarity=0.332 Sum_probs=211.2
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHh--cCCCCceEEEeecccccccC
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKN--IRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~ 736 (988)
....++|++.+.||+|+||.||+|++ +++.||||++... ....+.+|++++.. ++||||+++++++... ...
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~-~~~ 111 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKD-NGT 111 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECC-CSS
T ss_pred ccccccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeeccc-CCc
Confidence 34457899999999999999999998 6899999998643 34677889998887 6999999999997543 111
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHH--------cCCCCCeEeccCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLH--------HHCQEPVLHCDLKPG 808 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~ 808 (988)
....++||||+++|+|.+++... .+++.+++.++.|++.||+||| +. +|+||||||+
T Consensus 112 ~~~~~lv~e~~~~g~L~~~l~~~------------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~ 176 (342)
T 1b6c_B 112 WTQLWLVSDYHEHGSLFDYLNRY------------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSK 176 (342)
T ss_dssp CCCEEEEECCCTTCBHHHHHHHC------------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGG
T ss_pred cceeEEEEeecCCCcHHHHHhcc------------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHH
Confidence 23789999999999999998532 5899999999999999999999 76 9999999999
Q ss_pred CeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC------CCCCccchHHHHHHHHHHHhC---
Q 001974 809 NVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS------EVSTNGDIYSYGILLLEMVTG--- 879 (988)
Q Consensus 809 NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwslG~vl~elltg--- 879 (988)
||+++.++.+||+|||++..................||+.|+|||++.+. .++.++|||||||++|||+||
T Consensus 177 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~ 256 (342)
T 1b6c_B 177 NILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI 256 (342)
T ss_dssp GEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCB
T ss_pred HEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCc
Confidence 99999999999999999987654432222222345699999999998775 334789999999999999999
Q ss_pred -------CCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccC
Q 001974 880 -------KKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSV 952 (988)
Q Consensus 880 -------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 952 (988)
..||......+.....+....... ........ .....+++..+.+++.+||+
T Consensus 257 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-------------~~~~~~~~~~l~~li~~cl~ 315 (342)
T 1b6c_B 257 GGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ--------KLRPNIPN-------------RWQSCEALRVMAKIMRECWY 315 (342)
T ss_dssp TTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS--------CCCCCCCG-------------GGGTSHHHHHHHHHHHHHCC
T ss_pred CCcccccccCccccCcCcccHHHHHHHHHHH--------HhCCCCcc-------------cccchhHHHHHHHHHHHHhc
Confidence 677765433333332222211111 01111000 00122566789999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh
Q 001974 953 ESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 953 ~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
.||++|||++|+++.|+++.++.
T Consensus 316 ~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 316 ANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp SSGGGSCCHHHHHHHHHHHHHTT
T ss_pred cChhhCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999997753
No 151
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=6.1e-39 Score=353.96 Aligned_cols=252 Identities=19% Similarity=0.264 Sum_probs=204.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc------hhHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG------ASKSFLAECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
.++|++.+.||+|+||.||+|++..+|+.||+|+++..... ..+.+.+|+.++++++||||+++++++.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 85 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE----- 85 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe-----
Confidence 35689999999999999999999989999999999754321 3467999999999999999999999954
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
.++..++||||+++++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 86 ~~~~~~lv~e~~~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~ 151 (321)
T 2a2a_A 86 NRTDVVLILELVSGGELFDFLAQKE-----------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151 (321)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHTCS-----------CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCT
T ss_pred cCCEEEEEEEcCCCCcHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecC
Confidence 4578999999999999999997543 588999999999999999999999 99999999999999988
Q ss_pred C----cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCc
Q 001974 816 M----IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL 891 (988)
Q Consensus 816 ~----~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 891 (988)
+ .+||+|||++......... ....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 152 ~~~~~~~kl~Dfg~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--- 223 (321)
T 2a2a_A 152 NIPIPHIKLIDFGLAHEIEDGVEF-----KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--- 223 (321)
T ss_dssp TSSSCCEEECCCTTCEECCTTCCC-----CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---
T ss_pred CCCcCCEEEccCccceecCccccc-----cccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH---
Confidence 8 7999999999866543221 234589999999999999999999999999999999999999863211
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...... +.. ...... . .....++..+.+++.+||+.||++|||++|+++
T Consensus 224 --~~~~~~-----i~~---~~~~~~-~---------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 224 --QETLAN-----ITS---VSYDFD-E---------------EFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp --HHHHHH-----HHT---TCCCCC-H---------------HHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred --HHHHHH-----HHh---cccccC-h---------------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 111100 000 000000 0 001246677999999999999999999999986
No 152
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2e-39 Score=352.25 Aligned_cols=262 Identities=28% Similarity=0.457 Sum_probs=197.0
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
...++|++.+.||+|+||+||+|++. ..||+|+++.... ...+.+.+|+.++++++||||+++++++. .
T Consensus 21 i~~~~y~~~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~ 91 (289)
T 3og7_A 21 IPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST------A 91 (289)
T ss_dssp CCTTSCEEEEEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------S
T ss_pred cCccceeeeeEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc------C
Confidence 34578999999999999999999874 2599999874432 33467899999999999999999999743 3
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 92 ~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~ 158 (289)
T 3og7_A 92 PQLAIVTQWCEGSSLYHHLHASE----------TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNT 158 (289)
T ss_dssp SSCEEEEECCCEEEHHHHHTTC-------------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTE
T ss_pred CccEEEEEecCCCcHHHHHhhcc----------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCC
Confidence 56899999999999999997554 3689999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccC---CCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL---GSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
+||+|||+++........ .......||+.|+|||++. +..++.++||||||+++|||++|+.||...... .
T Consensus 159 ~kl~Dfg~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----~ 232 (289)
T 3og7_A 159 VKIGDFGLATEKSRWSGS--HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR----D 232 (289)
T ss_dssp EEECCCC--------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH----H
T ss_pred EEEccceecccccccccc--ccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH----H
Confidence 999999999765432211 1122346899999999986 567888999999999999999999998643211 1
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
... ...... ...... ......+++++.+++.+||+.||++|||++|+++.|+++.
T Consensus 233 ~~~-~~~~~~-------~~~~~~---------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 233 QII-EMVGRG-------SLSPDL---------------SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp HHH-HHHHHT-------SCCCCT---------------TSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HHH-HHhccc-------ccCcch---------------hhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 111 100000 000000 0112357788999999999999999999999999999874
No 153
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=4.7e-39 Score=374.25 Aligned_cols=255 Identities=22% Similarity=0.316 Sum_probs=207.1
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
..++|++.+.||+|+||.||+|++..+|+.||+|++... .......+.+|++++++++||||+++++++. ++
T Consensus 182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~-----~~ 256 (576)
T 2acx_A 182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYE-----TK 256 (576)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CS
T ss_pred cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEe-----eC
Confidence 346799999999999999999999999999999999643 2233467889999999999999999999854 45
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++|+|.+++..... ..+++..++.++.||+.||+|||++ +||||||||+||+++.++.
T Consensus 257 ~~l~lVmEy~~gg~L~~~l~~~~~---------~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~ 324 (576)
T 2acx_A 257 DALCLVLTLMNGGDLKFHIYHMGQ---------AGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGH 324 (576)
T ss_dssp SEEEEEECCCCSCBHHHHHHSSSS---------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSC
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCC
Confidence 789999999999999999875432 2589999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||+|+....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ......
T Consensus 325 vKL~DFGla~~~~~~~~-----~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~~~~i~ 398 (576)
T 2acx_A 325 IRISDLGLAVHVPEGQT-----IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVE 398 (576)
T ss_dssp EEECCCTTCEECCTTCC-----EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-CHHHHH
T ss_pred eEEEecccceecccCcc-----ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-hHHHHH
Confidence 99999999987644322 123469999999999999999999999999999999999999997432211 100000
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-----CHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-----SITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 966 (988)
.. + .......+..+++++.+++.+||+.||++|| +++|+++
T Consensus 399 -~~----i-----------------------~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 399 -RL----V-----------------------KEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp -HH----H-----------------------HHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred -HH----h-----------------------hcccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 00 0 0011112235677899999999999999999 7888875
No 154
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=6.3e-39 Score=354.26 Aligned_cols=249 Identities=22% Similarity=0.290 Sum_probs=193.0
Q ss_pred hCCCCCCceeccccceeEEEEEEC---CCCeEEEEEEeeccc----cchhHHHHHHHHHHHhcCCCCceEEEeecccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFD---QDGTIVAIKVFNLQR----HGASKSFLAECKALKNIRHRNLVKVITSCSSIDF 734 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 734 (988)
.++|++.+.||+|+||.||+|+.. .+++.||+|+++... ......+.+|+.++++++||||+++++++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 91 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQ---- 91 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEE----
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEE----
Confidence 467999999999999999999984 588999999997432 223456788999999999999999999954
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN 814 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 814 (988)
.++..++||||+++++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.
T Consensus 92 -~~~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~ 156 (327)
T 3a62_A 92 -TGGKLYLILEYLSGGELFMQLERE-----------GIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNH 156 (327)
T ss_dssp -CSSCEEEEEECCTTEEHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECT
T ss_pred -cCCEEEEEEeCCCCCcHHHHHHhC-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECC
Confidence 457899999999999999998643 3588999999999999999999999 9999999999999999
Q ss_pred CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 815 DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 815 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
++.+||+|||+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..... .
T Consensus 157 ~~~~kl~Dfg~~~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~ 227 (327)
T 3a62_A 157 QGHVKLTDFGLCKESIHDGT----VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR-----K 227 (327)
T ss_dssp TSCEEECCCSCC--------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----H
T ss_pred CCcEEEEeCCcccccccCCc----cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH-----H
Confidence 99999999999975432211 12234689999999999999999999999999999999999999863211 1
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-----CHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-----SITNVVH 966 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 966 (988)
..... +. ......+..++.++.+++.+||+.||++|| +++|+++
T Consensus 228 ~~~~~-----i~-----------------------~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 228 KTIDK-----IL-----------------------KCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp HHHHH-----HH-----------------------HTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred HHHHH-----HH-----------------------hCCCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 11100 00 011112235677899999999999999999 6777765
No 155
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=3.4e-39 Score=349.01 Aligned_cols=262 Identities=22% Similarity=0.379 Sum_probs=206.9
Q ss_pred hhCCCCCCceeccccceeEEEEEECC---CCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQ---DGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
..++|++.+.||+|+||.||+|++.. ++..||+|+++... ....+.+.+|+.++++++||||+++++++..
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----- 84 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE----- 84 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-----
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-----
Confidence 45679999999999999999999753 34569999987542 3345778999999999999999999998542
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
+..++||||+++++|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 85 -~~~~~v~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~ 150 (281)
T 3cc6_A 85 -EPTWIIMELYPYGELGHYLERNK----------NSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPE 150 (281)
T ss_dssp -SSCEEEEECCTTCBHHHHHHHHT----------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETT
T ss_pred -CCCEEEEecCCCCCHHHHHHhcc----------ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCC
Confidence 45689999999999999986432 3589999999999999999999998 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||.+.......... .....+++.|+|||++.+..++.++||||||+++|||++ |+.||...... ....
T Consensus 151 ~~kl~Dfg~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~ 225 (281)
T 3cc6_A 151 CVKLGDFGLSRYIEDEDYYK---ASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIG 225 (281)
T ss_dssp EEEECCCCGGGCC------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHH
T ss_pred cEEeCccCCCcccccccccc---cccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHH
Confidence 99999999998654432111 122347889999999988899999999999999999998 99998632211 1100
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
... . ......+..+++.+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 226 ~~~--------~----------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 275 (281)
T 3cc6_A 226 VLE--------K----------------------GDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQME 275 (281)
T ss_dssp HHH--------H----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHh--------c----------------------CCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhh
Confidence 000 0 0001122356778999999999999999999999999999987654
Q ss_pred h
Q 001974 976 L 976 (988)
Q Consensus 976 ~ 976 (988)
.
T Consensus 276 ~ 276 (281)
T 3cc6_A 276 K 276 (281)
T ss_dssp H
T ss_pred h
Confidence 3
No 156
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=4.4e-39 Score=360.10 Aligned_cols=255 Identities=22% Similarity=0.281 Sum_probs=196.0
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||+||+|++..+++.||+|++.... ...+.+.+|+.++++++||||+++++++. .++..
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~ 91 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVIL-----TPTHL 91 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEe-----eCCEE
Confidence 3578999999999999999999999999999999997443 33467889999999999999999999964 45789
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc--E
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI--A 818 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~ 818 (988)
++||||+++|+|.+++... .++++..++.++.|++.||+|||++ +|+||||||+||+++.++. +
T Consensus 92 ~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~ 157 (361)
T 3uc3_A 92 AIIMEYASGGELYERICNA-----------GRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRL 157 (361)
T ss_dssp EEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCE
T ss_pred EEEEEeCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceE
Confidence 9999999999999998543 3689999999999999999999998 9999999999999987765 9
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCc-cchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTN-GDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||+++....... .....||+.|+|||++.+..++.+ +||||+||++|||++|+.||....... .+....
T Consensus 158 kl~Dfg~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~ 231 (361)
T 3uc3_A 158 KICDFGYSKSSVLHSQ-----PKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTI 231 (361)
T ss_dssp EECCCCCC--------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHH
T ss_pred EEeecCccccccccCC-----CCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHH
Confidence 9999999974332221 123459999999999988877655 899999999999999999987432211 111111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
..... ... .......+++++.+++.+||+.||++|||++|+++.
T Consensus 232 ~~~~~--------~~~------------------~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 232 QRILS--------VKY------------------SIPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp HHHHT--------TCC------------------CCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHhc--------CCC------------------CCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 11100 000 001112467789999999999999999999999864
No 157
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=5e-39 Score=348.88 Aligned_cols=271 Identities=24% Similarity=0.304 Sum_probs=198.8
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
++|++.+.||+|+||+||+|++ .+++.||+|+++.... ...+.+.+|++++++++||||+++++++. .++..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 75 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRL 75 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCE
T ss_pred ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----cCCeE
Confidence 5789999999999999999999 5899999999864432 23467889999999999999999999954 44789
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||++ ++|.+++.... ..+++.++..++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 76 ~lv~e~~~-~~l~~~~~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl 141 (288)
T 1ob3_A 76 VLVFEHLD-QDLKKLLDVCE----------GGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKI 141 (288)
T ss_dssp EEEEECCS-EEHHHHHHTST----------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEE
T ss_pred EEEEEecC-CCHHHHHHhcc----------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEE
Confidence 99999996 59999886543 3688999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+++....... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ ...... .
T Consensus 142 ~Dfg~~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~-~ 215 (288)
T 1ob3_A 142 ADFGLARAFGIPVR----KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIF-R 215 (288)
T ss_dssp CCTTHHHHHCC-------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHH-H
T ss_pred eECccccccCcccc----ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHH-H
Confidence 99999986543211 1122458999999999876 458999999999999999999999987432110 000000 0
Q ss_pred HHhhhh-hhhhc----cccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHV-IDIVD----PILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~-~~~~d----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...... ..+.. +........+ ...........++.++.+++.+||+.||++|||++|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 216 ILGTPNSKNWPNVTELPKYDPNFTVY-------EPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp HHCCCCTTTSTTGGGSTTCCTTCCCC-------CCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHCCCChhhchhhhcccccccccccc-------cCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000 00000 0000000000 000001122356788999999999999999999999875
No 158
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1e-38 Score=346.35 Aligned_cols=265 Identities=23% Similarity=0.383 Sum_probs=212.2
Q ss_pred hCCCCCCc-eeccccceeEEEEEEC--CCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTH-LIGMGSFGSVYKGAFD--QDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~-~lg~G~~g~Vy~a~~~--~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|.+.+ .||+|+||.||+|.+. .+++.||+|+++... ....+.+.+|++++++++||||+++++++. .
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~ 81 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------A 81 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------S
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------C
Confidence 35566666 9999999999999863 467889999997543 234567899999999999999999999962 2
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 82 ~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~ 148 (287)
T 1u59_A 82 EALMLVMEMAGGGPLHKFLVGKR----------EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHY 148 (287)
T ss_dssp SSEEEEEECCTTEEHHHHHTTCT----------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTE
T ss_pred CCcEEEEEeCCCCCHHHHHHhCC----------ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCC
Confidence 56899999999999999997543 3689999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||++.......... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...... ..
T Consensus 149 ~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-----~~ 222 (287)
T 1u59_A 149 AKISDFGLSKALGADDSYY-TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP-----EV 222 (287)
T ss_dssp EEECCCTTCEECTTCSCEE-CCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH-----HH
T ss_pred EEECcccceeeeccCccee-eccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH-----HH
Confidence 9999999998764432211 11222346889999999988889999999999999999999 99998642111 00
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhh
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALL 976 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 976 (988)
.. .+.. ......+..+++++.+++.+||+.||++||++.|+++.|+++..+..
T Consensus 223 ~~-----~i~~----------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 275 (287)
T 1u59_A 223 MA-----FIEQ----------------------GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA 275 (287)
T ss_dssp HH-----HHHT----------------------TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HH-----HHhc----------------------CCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 00 0000 00012234678889999999999999999999999999999988766
Q ss_pred hh
Q 001974 977 EA 978 (988)
Q Consensus 977 ~~ 978 (988)
..
T Consensus 276 ~~ 277 (287)
T 1u59_A 276 SK 277 (287)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 159
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=355.37 Aligned_cols=280 Identities=23% Similarity=0.374 Sum_probs=215.8
Q ss_pred hCCCCCCceeccccceeEEEEEE----CCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAF----DQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|++ ..+++.||+|++........+.+.+|++++++++||||+++++++... ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec---CC
Confidence 45688999999999999999994 568899999999876666667899999999999999999999986532 23
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~ 183 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHK----------ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENR 183 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHST----------TSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHhcc----------cCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCc
Confidence 57899999999999999997543 3589999999999999999999998 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||++.......... .......++..|+|||.+.+..++.++||||||+++|||+||..||..... .+.
T Consensus 184 ~kL~Dfg~~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~------~~~ 256 (326)
T 2w1i_A 184 VKIGDFGLTKVLPQDKEYY-KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFM 256 (326)
T ss_dssp EEECCCTTCEECCSSCSEE-ECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH------HHH
T ss_pred EEEecCcchhhcccccccc-ccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH------HHH
Confidence 9999999998765433211 112223477889999999888899999999999999999999999753210 000
Q ss_pred HHHHhhhhhhhhccccccCcchhh-hhhHHHH-hhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 898 RTALLDHVIDIVDPILINDVEDWD-ATNKQRL-RQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
....... ...+. ....+.+ .......+..++.++.+++.+||+.||++|||++|+++.|+++++++
T Consensus 257 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 257 RMIGNDK------------QGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHHCTTC------------CTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred Hhhcccc------------chhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 0000000 00000 0000000 01112234467889999999999999999999999999999998876
Q ss_pred h
Q 001974 976 L 976 (988)
Q Consensus 976 ~ 976 (988)
.
T Consensus 325 ~ 325 (326)
T 2w1i_A 325 A 325 (326)
T ss_dssp H
T ss_pred c
Confidence 4
No 160
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=6e-39 Score=353.11 Aligned_cols=274 Identities=23% Similarity=0.354 Sum_probs=214.1
Q ss_pred hhCCCCCCceeccccceeEEEEEE-----CCCCeEEEEEEeecccc-chhHHHHHHHHHHHhc-CCCCceEEEeeccccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAF-----DQDGTIVAIKVFNLQRH-GASKSFLAECKALKNI-RHRNLVKVITSCSSID 733 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~-----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 733 (988)
..++|++.+.||+|+||.||+|++ ..+++.||+|+++.... ...+.+.+|+.+++++ +||||+++++++.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~--- 97 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT--- 97 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe---
Confidence 456799999999999999999985 34678999999975433 3456789999999999 9999999999964
Q ss_pred ccCCCceEEEEeeccccchhhhcCCCCCCCc-------hhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCC
Q 001974 734 FQGNDFKALVYEFMTNGSLENWLHPDAVPQK-------DVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLK 806 (988)
Q Consensus 734 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~-------~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 806 (988)
.++..++||||+++|+|.+++........ ........+++.+++.++.||+.||+|||+. +|+|||||
T Consensus 98 --~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlk 172 (313)
T 1t46_A 98 --IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLA 172 (313)
T ss_dssp --SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred --cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCc
Confidence 34778999999999999999975432100 0001113589999999999999999999999 99999999
Q ss_pred CCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCc
Q 001974 807 PGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDV 885 (988)
Q Consensus 807 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~ 885 (988)
|+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++||||||+++|||+| |+.||..
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~ 250 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDSNY--VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG 250 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTS--EECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred cceEEEcCCCCEEEccccccccccccccc--eeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999876543321 11223457889999999988899999999999999999999 9999864
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH
Q 001974 886 MFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVV 965 (988)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 965 (988)
..... ....... ... ....+..++.++.+++.+||+.||++|||++|++
T Consensus 251 ~~~~~-----~~~~~~~----~~~----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 299 (313)
T 1t46_A 251 MPVDS-----KFYKMIK----EGF----------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIV 299 (313)
T ss_dssp CCSSH-----HHHHHHH----HTC----------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccchh-----HHHHHhc----cCC----------------------CCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence 32110 0000000 000 0011235677899999999999999999999999
Q ss_pred HHHHHHHHHh
Q 001974 966 HELQSVKNAL 975 (988)
Q Consensus 966 ~~L~~i~~~~ 975 (988)
+.|+++..+.
T Consensus 300 ~~L~~~~~~~ 309 (313)
T 1t46_A 300 QLIEKQISES 309 (313)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 161
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=2.9e-39 Score=348.99 Aligned_cols=256 Identities=27% Similarity=0.423 Sum_probs=201.7
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++ .|+.||+|+++.. ...+.+.+|++++++++||||+++++++.. .++..
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~ 90 (278)
T 1byg_A 19 NMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGL 90 (278)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CC
T ss_pred ChhhceEEeEEecCCCceEEEEEE--cCCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEc----CCCce
Confidence 346799999999999999999998 5899999998643 345789999999999999999999998643 33578
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... ...+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l 158 (278)
T 1byg_A 91 YIVTEYMAKGSLVDYLRSRG---------RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKV 158 (278)
T ss_dssp EEEECCCTTEEHHHHHHHHH---------HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEE
T ss_pred EEEEecCCCCCHHHHHHhcc---------cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEE
Confidence 99999999999999985321 12489999999999999999999998 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||++........ ...+++.|+|||.+.+..++.++||||||+++|||+| |+.||...... . ....
T Consensus 159 ~Dfg~~~~~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~---~~~~ 226 (278)
T 1byg_A 159 SDFGLTKEASSTQD-------TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--D---VVPR 226 (278)
T ss_dssp CCCCC-------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--G---HHHH
T ss_pred eecccccccccccc-------CCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--H---HHHH
Confidence 99999975443211 1247889999999988899999999999999999998 99998642111 0 0000
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
+.. ......+..+++++.+++.+||+.||++|||++|+++.|++++...
T Consensus 227 -----~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 227 -----VEK----------------------GYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp -----HTT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -----Hhc----------------------CCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 000 0011123357788999999999999999999999999999998753
No 162
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=2.8e-39 Score=361.64 Aligned_cols=249 Identities=24% Similarity=0.301 Sum_probs=193.5
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---chhHHHHHHHHH-HHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---GASKSFLAECKA-LKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|+++.+++.||+|+++.... .....+..|..+ ++.++||||+++++++. ..
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~-----~~ 111 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQ-----TA 111 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEE-----CS
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEE-----eC
Confidence 4679999999999999999999999999999999975432 233456677776 56789999999999854 45
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++|+|.+++... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.
T Consensus 112 ~~~~lv~E~~~gg~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ 177 (373)
T 2r5t_A 112 DKLYFVLDYINGGELFYHLQRE-----------RCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGH 177 (373)
T ss_dssp SEEEEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSC
T ss_pred CEEEEEEeCCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCC
Confidence 8899999999999999998643 3688999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... .....
T Consensus 178 ikL~DFG~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~-----~~~~~ 248 (373)
T 2r5t_A 178 IVLTDFGLCKENIEHNS----TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN-----TAEMY 248 (373)
T ss_dssp EEECCCCBCGGGBCCCC----CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB-----HHHHH
T ss_pred EEEeeCccccccccCCC----ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----HHHHH
Confidence 99999999985332211 1223569999999999999999999999999999999999999986321 11111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.. +. ......+..++.++.+++.+||+.||++||++.+.++
T Consensus 249 ~~-----i~-----------------------~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~ 289 (373)
T 2r5t_A 249 DN-----IL-----------------------NKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFM 289 (373)
T ss_dssp HH-----HH-----------------------HSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred HH-----HH-----------------------hcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence 10 00 0011223356778999999999999999999864433
No 163
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=8e-39 Score=346.79 Aligned_cols=253 Identities=21% Similarity=0.292 Sum_probs=204.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|.+..+++.||+|++..... ...+.+.+|+.++++++||||+++++++. .++.
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 79 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF 79 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEE-----cCCE
Confidence 5789999999999999999999998999999999975432 33467889999999999999999999954 4578
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc--
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI-- 817 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-- 817 (988)
.++||||+++++|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 80 ~~~v~e~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~ 145 (284)
T 3kk8_A 80 HYLVFDLVTGGELFEDIVAR-----------EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGA 145 (284)
T ss_dssp EEEEECCCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTC
T ss_pred EEEEEecCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCC
Confidence 89999999999998887543 3689999999999999999999999 9999999999999986655
Q ss_pred -EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 818 -AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 -~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||.+......... ....||+.|+|||++.+..++.++||||+|+++|+|++|+.||..... ...
T Consensus 146 ~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-----~~~ 215 (284)
T 3kk8_A 146 AVKLADFGLAIEVNDSEAW-----HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----HRL 215 (284)
T ss_dssp CEEECCCTTCEECCSSCBC-----CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred cEEEeeceeeEEcccCccc-----cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch-----hHH
Confidence 999999999765543221 234589999999999999999999999999999999999999863211 111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.... .... .... ......+++++.+++.+||+.||++|||++|+++.
T Consensus 216 ~~~~-~~~~-------~~~~----------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 216 YAQI-KAGA-------YDYP----------------SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp HHHH-HHTC-------CCCC----------------TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HHHH-Hhcc-------ccCC----------------chhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 1100 0000 0000 00112467789999999999999999999999874
No 164
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=366.64 Aligned_cols=263 Identities=21% Similarity=0.235 Sum_probs=205.8
Q ss_pred CHHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 001974 654 SYESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCS 730 (988)
Q Consensus 654 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 730 (988)
.+.+.....++|++.+.||+|+||+||+|+++.+|+.||+|+++... ....+.+.+|..++..++||||+++++++
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~- 130 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF- 130 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE-
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE-
Confidence 34445556789999999999999999999999899999999996432 22335688999999999999999999985
Q ss_pred cccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCe
Q 001974 731 SIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNV 810 (988)
Q Consensus 731 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 810 (988)
.+++..++||||+++|+|.+++.... ..+++..++.++.||+.||+|||+. +||||||||+||
T Consensus 131 ----~~~~~~~lVmE~~~gg~L~~~l~~~~----------~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NI 193 (412)
T 2vd5_A 131 ----QDENYLYLVMEYYVGGDLLTLLSKFG----------ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNI 193 (412)
T ss_dssp ----ECSSEEEEEECCCCSCBHHHHHHHHS----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGE
T ss_pred ----eeCCEEEEEEcCCCCCcHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHe
Confidence 44588999999999999999996432 2689999999999999999999998 999999999999
Q ss_pred eeCCCCcEEEeeecccccccccccccceeccccccccccccCcccC-------CCCCCCccchHHHHHHHHHHHhCCCCC
Q 001974 811 LLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL-------GSEVSTNGDIYSYGILLLEMVTGKKPT 883 (988)
Q Consensus 811 ll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~sDvwslG~vl~elltg~~p~ 883 (988)
|++.++.+||+|||+++....... .......||+.|+|||++. +..++.++|||||||++|||++|+.||
T Consensus 194 Lld~~g~vkL~DFGla~~~~~~~~---~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf 270 (412)
T 2vd5_A 194 LLDRCGHIRLADFGSCLKLRADGT---VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPF 270 (412)
T ss_dssp EECTTSCEEECCCTTCEECCTTSC---EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred eecCCCCEEEeechhheeccCCCc---cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCC
Confidence 999999999999999986544322 1122356999999999987 457899999999999999999999998
Q ss_pred CccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCC---CC
Q 001974 884 DVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDR---MS 960 (988)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R---Ps 960 (988)
..... ........... ... ........++.++.+++.+||. +|++| |+
T Consensus 271 ~~~~~-----~~~~~~i~~~~-~~~----------------------~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~ 321 (412)
T 2vd5_A 271 YADST-----AETYGKIVHYK-EHL----------------------SLPLVDEGVPEEARDFIQRLLC-PPETRLGRGG 321 (412)
T ss_dssp CCSSH-----HHHHHHHHTHH-HHC----------------------CCC----CCCHHHHHHHHTTSS-CGGGCTTTTT
T ss_pred CCCCH-----HHHHHHHHhcc-cCc----------------------CCCccccCCCHHHHHHHHHHcC-ChhhcCCCCC
Confidence 63211 11111100000 000 0000112567889999999999 99998 58
Q ss_pred HHHHHH
Q 001974 961 ITNVVH 966 (988)
Q Consensus 961 ~~evl~ 966 (988)
++|+++
T Consensus 322 ~~ei~~ 327 (412)
T 2vd5_A 322 AGDFRT 327 (412)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888865
No 165
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.1e-38 Score=363.99 Aligned_cols=344 Identities=26% Similarity=0.379 Sum_probs=186.4
Q ss_pred CCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccc
Q 001974 55 LSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLA 134 (988)
Q Consensus 55 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 134 (988)
+++++.|+++++.++. +| .+..+++|++|+|++|.+++..| |+.+++|++|+|++|++++..+ |.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4566667777666663 44 25666667777777776664333 6666667777777776664433 66666667777
Q ss_pred cccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCC
Q 001974 135 MQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHG 214 (988)
Q Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~ 214 (988)
+++|.+++..+ +.++++|++|++++|.+.+ ++ .++++++|++|+++ |.+.+.. .+.++++|++|++++|++.
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~- 190 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS- 190 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC-
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC-
Confidence 76666664322 6666666666666666663 22 36666666666665 3444322 2666666666666666665
Q ss_pred CCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchh
Q 001974 215 SLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMS 294 (988)
Q Consensus 215 ~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 294 (988)
.++. +..+++|+.|++++|.+++..| +..+++|+.|++++|++.+. ..+..+++|+.|++++|.++...+
T Consensus 191 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---- 260 (466)
T 1o6v_A 191 DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---- 260 (466)
T ss_dssp CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----
T ss_pred CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh----
Confidence 3322 3355556666666665554433 44455555555555555543 234455555555555555543221
Q ss_pred hhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCC
Q 001974 295 FMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGK 374 (988)
Q Consensus 295 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 374 (988)
+..+++|++|++++|++++..+ +..+ ++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..
T Consensus 261 ----~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 261 ----LSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp ----GTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred ----hhcCCCCCEEECCCCccCcccc--ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc
Confidence 3444555555555555542221 2222 245555555555543322 4455555555555555554333 445
Q ss_pred CCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCC
Q 001974 375 LQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLN 437 (988)
Q Consensus 375 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 437 (988)
+++|+.|++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|.++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 55555555555555532 234555555555555555554444 455555555555555554
No 166
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=357.76 Aligned_cols=272 Identities=19% Similarity=0.221 Sum_probs=211.0
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++... .......
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~ 105 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEA 105 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCcee
Confidence 356799999999999999999999889999999999766666667899999999999999999999997532 1234578
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++|+|.+++...... ...+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 106 ~lv~e~~~~~~L~~~l~~~~~~-------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl 175 (317)
T 2buj_A 106 WLLLPFFKRGTLWNEIERLKDK-------GNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVL 175 (317)
T ss_dssp EEEEECCTTCBHHHHHHHHHTT-------TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEE
Confidence 9999999999999998642110 13689999999999999999999999 9999999999999999999999
Q ss_pred eeeccccccccccccc-----ceeccccccccccccCcccCCCC---CCCccchHHHHHHHHHHHhCCCCCCccccCCcc
Q 001974 821 GDFGLARVRQEVSNLT-----QSCSVGVRGTIGYAAPEYGLGSE---VSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN 892 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 892 (988)
+|||.+.......... ........||+.|+|||++.+.. ++.++||||||+++|||++|+.||.........
T Consensus 176 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~ 255 (317)
T 2buj_A 176 MDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS 255 (317)
T ss_dssp CCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSC
T ss_pred EecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccch
Confidence 9999987543211110 00011234799999999987654 688999999999999999999998632221111
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVK 972 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 972 (988)
..... .. .........++.++.+++.+||+.||++|||++|+++.|+++.
T Consensus 256 ~~~~~------------~~------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 256 VALAV------------QN------------------QLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp HHHHH------------HC------------------C--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred hhHHh------------hc------------------cCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 11000 00 0001112356778999999999999999999999999999875
Q ss_pred H
Q 001974 973 N 973 (988)
Q Consensus 973 ~ 973 (988)
.
T Consensus 306 ~ 306 (317)
T 2buj_A 306 P 306 (317)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.9e-39 Score=357.47 Aligned_cols=276 Identities=24% Similarity=0.376 Sum_probs=211.6
Q ss_pred CCCCceeccccceeEEEEEE----CCCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 665 FSSTHLIGMGSFGSVYKGAF----DQDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 665 y~~~~~lg~G~~g~Vy~a~~----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
|++++.||+|+||+||+|.+ ..+++.||||+++.... ...+.+.+|++++++++||||+++++++... ....
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 109 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA---GAAS 109 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET---TTTE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC---CCce
Confidence 48899999999999988765 34788999999975432 3356789999999999999999999997542 3467
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++++|.+++... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~------------~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~k 174 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRH------------SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVK 174 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGS------------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEE
T ss_pred EEEEEecccCCcHHHHHhhC------------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEE
Confidence 89999999999999999643 478999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||++......... ........+|..|+|||++.+..++.++||||||+++|||++|+.||............+...
T Consensus 175 l~Dfg~a~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~ 253 (318)
T 3lxp_A 175 IGDFGLAKAVPEGHEY-YRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQG 253 (318)
T ss_dssp ECCGGGCEECCTTCSE-EEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCH
T ss_pred ECCccccccccccccc-cccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhccccc
Confidence 9999999876543221 112223457889999999999899999999999999999999999976321110000000000
Q ss_pred -HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 900 -ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 900 -~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
.....+.+.+ ........+..++.++.+++.+||+.||++|||++|+++.|+++.+++..
T Consensus 254 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 254 QMTVLRLTELL------------------ERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp HHHHHHHHHHH------------------HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHH------------------hcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence 0000000000 01111223446788999999999999999999999999999999988764
No 168
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=7e-39 Score=356.34 Aligned_cols=289 Identities=22% Similarity=0.292 Sum_probs=205.7
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHH--HHhcCCCCceEEEeecccccccCCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKA--LKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
..++|++.+.||+|+||.||+|++ +++.||||+++... ...+..|.++ +..++||||+++++++.........
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 85 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM 85 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred ChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence 357899999999999999999987 78999999986433 2344444444 4558999999999876554455556
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC------CCCeEeccCCCCCeee
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC------QEPVLHCDLKPGNVLL 812 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------~~~ivH~Dlkp~NIll 812 (988)
..++||||+++|+|.+++... ..++..++.++.||+.||+|||+.+ .++|+||||||+||++
T Consensus 86 ~~~lv~e~~~~g~L~~~l~~~------------~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill 153 (336)
T 3g2f_A 86 EYLLVMEYYPNGSLXKYLSLH------------TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLV 153 (336)
T ss_dssp EEEEEECCCTTCBHHHHHHHC------------CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEE
T ss_pred eEEEEEecCCCCcHHHHHhhc------------ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEE
Confidence 789999999999999999543 4588899999999999999999862 2389999999999999
Q ss_pred CCCCcEEEeeeccccccccccccc----ceeccccccccccccCcccCC-------CCCCCccchHHHHHHHHHHHhCCC
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLT----QSCSVGVRGTIGYAAPEYGLG-------SEVSTNGDIYSYGILLLEMVTGKK 881 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDvwslG~vl~elltg~~ 881 (988)
+.++.+||+|||+++......... ........||+.|+|||++.+ ..++.++|||||||++|||++|..
T Consensus 154 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~ 233 (336)
T 3g2f_A 154 KNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCT 233 (336)
T ss_dssp CTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBG
T ss_pred cCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCC
Confidence 999999999999998665432111 111223469999999999887 456778999999999999999977
Q ss_pred CCCccccCCcchHHHHHHHHhh----hhhhhh-ccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCC
Q 001974 882 PTDVMFEGDLNLHNYARTALLD----HVIDIV-DPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQ 956 (988)
Q Consensus 882 p~~~~~~~~~~~~~~~~~~~~~----~~~~~~-d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 956 (988)
||............+....... ...... ......... ........+++++.+++.+||+.||+
T Consensus 234 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~li~~cl~~dP~ 301 (336)
T 3g2f_A 234 DLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFP------------EAWKENSLAVRSLKETIEDCWDQDAE 301 (336)
T ss_dssp GGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCC------------TTCCCCSHHHHHHHHHHHHHSCSSGG
T ss_pred cCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCC------------cccccccchHHHHHHHHHHHhcCChh
Confidence 7643221111000000000000 000000 000000000 00011223667899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhh
Q 001974 957 DRMSITNVVHELQSVKNALLEA 978 (988)
Q Consensus 957 ~RPs~~evl~~L~~i~~~~~~~ 978 (988)
+|||++|+++.|+++...+...
T Consensus 302 ~Rps~~e~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 302 ARLTAQXAEERMAELMMIWERN 323 (336)
T ss_dssp GSCCHHHHHHHHHHHHHCCCC-
T ss_pred hCcchHHHHHHHHHHHHHHHhc
Confidence 9999999999999998776553
No 169
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=9.8e-41 Score=365.60 Aligned_cols=271 Identities=23% Similarity=0.356 Sum_probs=189.7
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHh--cCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKN--IRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|++ +++.||||+++.. ....+.+|.+++.. ++||||+++++++... ......
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKD-NGTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C--TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEE-CSSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEE--cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccC-CCccce
Confidence 36799999999999999999987 5889999998643 33567788888887 7999999999997653 111136
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHH--------cCCCCCeEeccCCCCCee
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLH--------HHCQEPVLHCDLKPGNVL 811 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlkp~NIl 811 (988)
.++||||+++|+|.+++... .+++..++.++.|++.||+||| +. +|+||||||+||+
T Consensus 76 ~~lv~e~~~~g~L~~~l~~~------------~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil 140 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNRY------------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNIL 140 (303)
T ss_dssp EEEEEECCTTCCHHHHHHHC------------CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-
T ss_pred eEEEEeccCCCCHHHHHhcc------------CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeE
Confidence 89999999999999999542 4777889999999999999999 76 9999999999999
Q ss_pred eCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC------CCCCccchHHHHHHHHHHHhC------
Q 001974 812 LDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS------EVSTNGDIYSYGILLLEMVTG------ 879 (988)
Q Consensus 812 l~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwslG~vl~elltg------ 879 (988)
++.++.+||+|||+++.................||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 141 ~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~ 220 (303)
T 3gxj_A 141 VKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI 220 (303)
T ss_dssp CCTTCCC-BCCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTB
T ss_pred ECCCCCEEEeecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999986655433222222334699999999998876 445789999999999999999
Q ss_pred ----CCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCC
Q 001974 880 ----KKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESP 955 (988)
Q Consensus 880 ----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP 955 (988)
..||......+......... ...........+ .....+++..+.+++.+||+.||
T Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-------------~~~~~~~~~~l~~li~~cl~~dP 279 (303)
T 3gxj_A 221 HEDYQLPYYDLVPSDPSVEEMRKV--------VCEQKLRPNIPN-------------RWQSCEALRVMAKIMRECWYANG 279 (303)
T ss_dssp C-CCCCTTTTTCC-CCCCC-CHHH--------HTTSCCCCCCCG-------------GGGSSHHHHHHHHHHHTTCCSSG
T ss_pred cceeeccccccCCCCccHHHHHHH--------HHHhhcCCCccc-------------cccchhhHHHHHHHHHHHhccCc
Confidence 55554322221111111111 011111111110 00112566789999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 001974 956 QDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 956 ~~RPs~~evl~~L~~i~~~ 974 (988)
++|||++|+++.|+++.++
T Consensus 280 ~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 280 AARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp GGSCCHHHHHHHHHC-CCC
T ss_pred ccCCCHHHHHHHHHHhhhh
Confidence 9999999999999987543
No 170
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1.1e-38 Score=354.11 Aligned_cols=275 Identities=20% Similarity=0.399 Sum_probs=213.0
Q ss_pred hhCCCCCCceeccccceeEEEEEEC-------CCCeEEEEEEeecccc-chhHHHHHHHHHHHhc-CCCCceEEEeeccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFD-------QDGTIVAIKVFNLQRH-GASKSFLAECKALKNI-RHRNLVKVITSCSS 731 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~ 731 (988)
..++|++.+.||+|+||.||+|++. .+++.||+|+++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~- 111 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT- 111 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc-
Confidence 4578999999999999999999985 3567899999975432 3346789999999999 9999999999964
Q ss_pred ccccCCCceEEEEeeccccchhhhcCCCCCCCch-----hhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCC
Q 001974 732 IDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKD-----VEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLK 806 (988)
Q Consensus 732 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~-----~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk 806 (988)
.++..++||||+++|+|.+++......... .......+++.+++.++.||+.||+|||+. +|+|||||
T Consensus 112 ----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlk 184 (334)
T 2pvf_A 112 ----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLA 184 (334)
T ss_dssp ----SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCS
T ss_pred ----cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCc
Confidence 347889999999999999999765421110 011123589999999999999999999999 99999999
Q ss_pred CCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCc
Q 001974 807 PGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDV 885 (988)
Q Consensus 807 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~ 885 (988)
|+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..
T Consensus 185 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~ 262 (334)
T 2pvf_A 185 ARNVLVTENNVMKIADFGLARDINNIDYY--KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG 262 (334)
T ss_dssp GGGEEECTTCCEEECCCTTCEECTTTSSE--ECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred cceEEEcCCCCEEEccccccccccccccc--cccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 99999999999999999999865543221 11223457889999999988889999999999999999999 9999863
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH
Q 001974 886 MFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVV 965 (988)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 965 (988)
.. ....... +.. ......+..++.++.+++.+||+.||++|||++|++
T Consensus 263 ~~-----~~~~~~~-----~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 310 (334)
T 2pvf_A 263 IP-----VEELFKL-----LKE----------------------GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLV 310 (334)
T ss_dssp CC-----HHHHHHH-----HHH----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CC-----HHHHHHH-----Hhc----------------------CCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 21 1111100 000 000112235678899999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 001974 966 HELQSVKNALLE 977 (988)
Q Consensus 966 ~~L~~i~~~~~~ 977 (988)
+.|+++.+....
T Consensus 311 ~~L~~l~~~~~~ 322 (334)
T 2pvf_A 311 EDLDRILTLTTN 322 (334)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHhcccc
Confidence 999999876544
No 171
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.1e-39 Score=361.76 Aligned_cols=212 Identities=25% Similarity=0.343 Sum_probs=182.9
Q ss_pred hhccccCHHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-----CCCc
Q 001974 648 KALQKVSYESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-----HRNL 722 (988)
Q Consensus 648 ~~~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~ni 722 (988)
.....+++.+.....++|++.++||+|+||+||+|++..+++.||||+++.. ....+.+..|+.+++.++ ||||
T Consensus 20 ~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~i 98 (360)
T 3llt_A 20 DEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNI 98 (360)
T ss_dssp CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGB
T ss_pred ccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCe
Confidence 4456677777667788999999999999999999999989999999998632 234467788999999986 9999
Q ss_pred eEEEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEe
Q 001974 723 VKVITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLH 802 (988)
Q Consensus 723 v~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH 802 (988)
+++++++.. .+..++||||+ +++|.+++..... ..+++.+++.++.||+.||+|||+. +|||
T Consensus 99 v~~~~~~~~-----~~~~~lv~e~~-~~~L~~~~~~~~~---------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH 160 (360)
T 3llt_A 99 VKYHGKFMY-----YDHMCLIFEPL-GPSLYEIITRNNY---------NGFHIEDIKLYCIEILKALNYLRKM---SLTH 160 (360)
T ss_dssp CCEEEEEEE-----TTEEEEEECCC-CCBHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred ecccceeeE-----CCeeEEEEcCC-CCCHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHHHHHHHC---Ceee
Confidence 999998653 47899999999 9999999975432 2588999999999999999999998 9999
Q ss_pred ccCCCCCeeeCC-------------------------CCcEEEeeecccccccccccccceeccccccccccccCcccCC
Q 001974 803 CDLKPGNVLLDN-------------------------DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG 857 (988)
Q Consensus 803 ~Dlkp~NIll~~-------------------------~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 857 (988)
|||||+|||++. ++.+||+|||+|+...... ....||+.|+|||++.+
T Consensus 161 rDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-------~~~~gt~~y~aPE~~~~ 233 (360)
T 3llt_A 161 TDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-------GSIINTRQYRAPEVILN 233 (360)
T ss_dssp SCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-------CSCCSCGGGCCHHHHTT
T ss_pred CCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC-------cCccCcccccCcHHHcC
Confidence 999999999975 7899999999998644321 23458999999999999
Q ss_pred CCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 858 SEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 858 ~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
..++.++|||||||++|||++|+.||..
T Consensus 234 ~~~~~~~DiwslG~il~ell~g~~pf~~ 261 (360)
T 3llt_A 234 LGWDVSSDMWSFGCVLAELYTGSLLFRT 261 (360)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 9999999999999999999999999874
No 172
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.4e-38 Score=343.45 Aligned_cols=254 Identities=23% Similarity=0.338 Sum_probs=205.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.+++.++||||+++++++. .++..
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 80 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEE-----cCCEE
Confidence 357899999999999999999999899999999997443 334578899999999999999999999864 34788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~-----------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 146 (276)
T 2yex_A 81 YLFLEYCSGGELFDRIEPDI-----------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKI 146 (276)
T ss_dssp EEEEECCTTEEGGGGSBTTT-----------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEE
T ss_pred EEEEEecCCCcHHHHHhhcc-----------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEE
Confidence 99999999999999997542 689999999999999999999998 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||.+........ ........|++.|+|||++.+..+ +.++||||||+++|||++|+.||.........+..+..
T Consensus 147 ~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~- 223 (276)
T 2yex_A 147 SDFGLATVFRYNNR--ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE- 223 (276)
T ss_dssp CCCTTCEECEETTE--ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHT-
T ss_pred eeCCCccccCCCcc--hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhh-
Confidence 99999986543221 111223568999999999988765 77899999999999999999999753322111111100
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
... .......++..+.+++.+||+.||++|||++|+++
T Consensus 224 -----------~~~------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 224 -----------KKT------------------YLNPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp -----------TCT------------------TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----------ccc------------------ccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 000 00011246678999999999999999999999976
No 173
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=6.9e-39 Score=353.16 Aligned_cols=282 Identities=22% Similarity=0.335 Sum_probs=217.6
Q ss_pred CHHHHHHhhCCCCCCceeccccceeEEEEEE-----CCCCeEEEEEEeecccc-chhHHHHHHHHHHHhc-CCCCceEEE
Q 001974 654 SYESLFKATDGFSSTHLIGMGSFGSVYKGAF-----DQDGTIVAIKVFNLQRH-GASKSFLAECKALKNI-RHRNLVKVI 726 (988)
Q Consensus 654 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~-----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~ 726 (988)
....+....++|++.+.||+|+||+||+|++ ..+++.||||+++.... ...+.+.+|+.+++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 3445555678899999999999999999985 34678999999975433 3346789999999999 799999999
Q ss_pred eecccccccCCCceEEEEeeccccchhhhcCCCCCCCch-----hhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeE
Q 001974 727 TSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKD-----VEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVL 801 (988)
Q Consensus 727 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~-----~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 801 (988)
+++.. .+...++||||+++++|.+++......... .......+++.+++.++.|++.||+|||+. +|+
T Consensus 98 ~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~ 170 (316)
T 2xir_A 98 GACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCI 170 (316)
T ss_dssp EEECC----TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred EEEec----CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 99643 235689999999999999999765421100 000012388999999999999999999999 999
Q ss_pred eccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CC
Q 001974 802 HCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GK 880 (988)
Q Consensus 802 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~ 880 (988)
||||||+||+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||+| |+
T Consensus 171 H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~ 248 (316)
T 2xir_A 171 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDY--VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA 248 (316)
T ss_dssp CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTS--EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred cccCccceEEECCCCCEEECCCccccccccCccc--eeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999865443221 11223457889999999998899999999999999999998 99
Q ss_pred CCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC
Q 001974 881 KPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS 960 (988)
Q Consensus 881 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs 960 (988)
.||......+ ... ..... ......+..+++++.+++.+||+.||++|||
T Consensus 249 ~p~~~~~~~~----~~~-~~~~~--------------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps 297 (316)
T 2xir_A 249 SPYPGVKIDE----EFC-RRLKE--------------------------GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT 297 (316)
T ss_dssp CSSTTCCCSH----HHH-HHHHH--------------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred CCCcccchhH----HHH-HHhcc--------------------------CccCCCCCCCCHHHHHHHHHHcCCChhhCcC
Confidence 9986432110 000 00000 0001122346778999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 001974 961 ITNVVHELQSVKNAL 975 (988)
Q Consensus 961 ~~evl~~L~~i~~~~ 975 (988)
++|+++.|+++.++.
T Consensus 298 ~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 298 FSELVEHLGNLLQAN 312 (316)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999997654
No 174
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=1.4e-38 Score=353.01 Aligned_cols=277 Identities=19% Similarity=0.236 Sum_probs=205.3
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||+||+|++..+++.||+|+++.. ..+.+.+|++++++++ ||||+++++++... .....
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~---~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDP---VSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECT---TTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccC---CCCce
Confidence 46799999999999999999999989999999998643 3477899999999996 99999999997542 24678
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC-cEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM-IAH 819 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~k 819 (988)
++||||+++++|.+++. .+++.+++.++.||+.||+|||+. +|+||||||+||+++.++ .+|
T Consensus 109 ~lv~e~~~~~~l~~~~~--------------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~k 171 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQ--------------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLR 171 (330)
T ss_dssp EEEEECCCCCCHHHHGG--------------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEE
T ss_pred EEEEeccCchhHHHHHH--------------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEE
Confidence 99999999999999873 578889999999999999999999 999999999999999776 899
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++........ ....|+..|+|||++.+ ..++.++|||||||++|||++|+.||.........+.....
T Consensus 172 l~Dfg~a~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~ 246 (330)
T 3nsz_A 172 LIDWGLAEFYHPGQEY-----NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAK 246 (330)
T ss_dssp ECCCTTCEECCTTCCC-----CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHH
T ss_pred EEeCCCceEcCCCCcc-----ccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHH
Confidence 9999999865543322 22458999999999877 67899999999999999999999998543222111211111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHH----H-HhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQ----R-LRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
........+.++.........+...... . ...........+++++.+++.+||+.||++|||++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 247 VLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp HHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 1111111111111110000000000000 0 000001112236788999999999999999999999986
No 175
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=2.1e-39 Score=374.13 Aligned_cols=263 Identities=28% Similarity=0.472 Sum_probs=206.9
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
...++|++.+.||+|+||.||+|.+. .+..||||+++... ...+.+.+|++++++++||||+++++++.. +.
T Consensus 181 i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~ 252 (452)
T 1fmk_A 181 IPRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EP 252 (452)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SS
T ss_pred cChhHceeeeeecCCCCeEEEEEEEC-CCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC------Cc
Confidence 34567889999999999999999996 56779999997543 335789999999999999999999998642 56
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++|+|.+++.... ...+++.+++.++.||+.||+|||++ +|+||||||+||++++++.+|
T Consensus 253 ~~iv~e~~~~gsL~~~l~~~~---------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~k 320 (452)
T 1fmk_A 253 IYIVTEYMSKGSLLDFLKGET---------GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCK 320 (452)
T ss_dssp CEEEECCCTTCBHHHHHSHHH---------HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEE
T ss_pred eEEEehhhcCCCHHHHHHhcC---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEE
Confidence 899999999999999996421 13589999999999999999999998 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++....... .......++..|+|||++.+..++.++|||||||++|||++ |+.||...... ...
T Consensus 321 l~DfG~a~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~-----~~~- 391 (452)
T 1fmk_A 321 VADFGLARLIEDNEY---TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-----EVL- 391 (452)
T ss_dssp ECCCCTTC-----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-----HHH-
T ss_pred ECCCccceecCCCce---ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH-----HHH-
Confidence 999999986543221 11223447889999999998899999999999999999999 99998632110 100
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
..+.. ......+..++..+.++|.+||+.||++|||++++++.|+++.+....
T Consensus 392 ----~~i~~----------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~ 444 (452)
T 1fmk_A 392 ----DQVER----------------------GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP 444 (452)
T ss_dssp ----HHHHT----------------------TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCC
T ss_pred ----HHHHc----------------------CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCc
Confidence 00000 001122346788899999999999999999999999999988655443
No 176
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=351.43 Aligned_cols=245 Identities=22% Similarity=0.254 Sum_probs=192.7
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCc
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 739 (988)
++|++.++||+|+||+||+|++..+|+.||||++..... .....+..|+..+.++ +||||++++++|. .++.
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~-----~~~~ 131 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWE-----EGGI 131 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE-----eCCE
Confidence 569999999999999999999998999999999864322 2234555666666665 9999999999965 3488
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+ +++|.+++.... ..+++..++.|+.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~----------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~k 197 (311)
T 3p1a_A 132 LYLQTELC-GPSLQQHCEAWG----------ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCK 197 (311)
T ss_dssp EEEEEECC-CCBHHHHHHHHC----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEE
T ss_pred EEEEEecc-CCCHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEE
Confidence 99999999 789998886543 3689999999999999999999998 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||++........ .....||+.|+|||++.+ .++.++|||||||++|||++|..|+... . .+
T Consensus 198 l~DFG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~---~~--- 261 (311)
T 3p1a_A 198 LGDFGLLVELGTAGA-----GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----E---GW--- 261 (311)
T ss_dssp ECCCTTCEECC-----------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----H---HH---
T ss_pred EccceeeeecccCCC-----CcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----c---HH---
Confidence 999999986544322 123458999999999876 7899999999999999999997765421 0 00
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
..+ ..... .. .....+++++.+++.+||+.||++|||++|+++
T Consensus 262 ---~~~---~~~~~---~~---------------~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 262 ---QQL---RQGYL---PP---------------EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ---HHH---TTTCC---CH---------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---HHH---hccCC---Cc---------------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 000 00000 00 011246778999999999999999999999985
No 177
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.5e-38 Score=360.42 Aligned_cols=280 Identities=23% Similarity=0.322 Sum_probs=196.6
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~ 737 (988)
..++|++.+.||+|+||.||+|.+..+|+.||||++... .....+.+.+|+.+++++. ||||+++++++... +.
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~---~~ 83 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRAD---ND 83 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECT---TS
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecC---CC
Confidence 457899999999999999999999999999999998533 2334567889999999996 99999999997532 34
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++||||++ ++|.+++.. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 84 ~~~~lv~e~~~-~~L~~~~~~------------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~ 147 (388)
T 3oz6_A 84 RDVYLVFDYME-TDLHAVIRA------------NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECH 147 (388)
T ss_dssp SCEEEEEECCS-EEHHHHHHH------------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCC
T ss_pred CEEEEEecccC-cCHHHHHHc------------CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCC
Confidence 57899999995 799988854 2588999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccc-----------------cceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhC
Q 001974 818 AHVGDFGLARVRQEVSNL-----------------TQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTG 879 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~-----------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg 879 (988)
+||+|||+|+........ .........||+.|+|||++.+ ..++.++||||+||++|||++|
T Consensus 148 ~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g 227 (388)
T 3oz6_A 148 VKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCG 227 (388)
T ss_dssp EEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHS
T ss_pred EEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhC
Confidence 999999999865331110 0111233579999999999886 6789999999999999999999
Q ss_pred CCCCCccccCCcchHHHHHHHHhhhhhhhhccc----------------------cccCcchhhhhhHHHHhhhhhcccc
Q 001974 880 KKPTDVMFEGDLNLHNYARTALLDHVIDIVDPI----------------------LINDVEDWDATNKQRLRQAKINGKI 937 (988)
Q Consensus 880 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------------------l~~~~~~~~~~~~~~~~~~~~~~~~ 937 (988)
++||...... ...............+.+... .......|.. .........
T Consensus 228 ~~pf~~~~~~--~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 299 (388)
T 3oz6_A 228 KPIFPGSSTM--NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKN------LLLKINPKA 299 (388)
T ss_dssp SCSCCCSSHH--HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHH------HHHHHCTTC
T ss_pred CCCCCCCCHH--HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhh------hcccccccc
Confidence 9998642111 000000000000000000000 0000001100 001111223
Q ss_pred chhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 938 ECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 938 ~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.+++++.+++.+||+.||++|||++|+++.
T Consensus 300 ~~~~~~~dll~~~L~~dP~~R~t~~e~l~H 329 (388)
T 3oz6_A 300 DCNEEALDLLDKLLQFNPNKRISANDALKH 329 (388)
T ss_dssp CCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred cCCHHHHHHHHHhhccCcccCCCHHHHhCC
Confidence 567889999999999999999999999864
No 178
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=7.1e-39 Score=345.97 Aligned_cols=250 Identities=24% Similarity=0.396 Sum_probs=184.9
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ..+
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFE-----DSN 84 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEE-----CSS
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEc-----cCC
Confidence 467999999999999999999998899999999996432 223467899999999999999999999954 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~ 151 (278)
T 3cok_A 85 YVYLVLEMCHNGEMNRYLKNRV----------KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNI 151 (278)
T ss_dssp EEEEEEECCTTEEHHHHHHTCS----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCE
T ss_pred eEEEEEecCCCCcHHHHHhhcc----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCE
Confidence 8999999999999999997653 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||.+......... .....||+.|+|||.+.+..++.++||||||+++|||++|+.||......+
T Consensus 152 kl~dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-------- 219 (278)
T 3cok_A 152 KIADFGLATQLKMPHEK----HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN-------- 219 (278)
T ss_dssp EECCCTTCEECC--------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------
T ss_pred EEEeecceeeccCCCCc----ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH--------
Confidence 99999999865432211 122458999999999999899999999999999999999999986421110
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
........+ ...+..++.++.+++.+||+.||++|||++|+++
T Consensus 220 ---------~~~~~~~~~----------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 220 ---------TLNKVVLAD----------------YEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp -------------CCSSC----------------CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ---------HHHHHhhcc----------------cCCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 000000000 0112346678999999999999999999999986
No 179
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=352.41 Aligned_cols=270 Identities=23% Similarity=0.325 Sum_probs=199.8
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
++|++.+.||+|+||+||+|++..+|+.||+|++..... ...+.+.+|++++++++||||+++++++. .++..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 77 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR-----RKRRL 77 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheee-----cCCeE
Confidence 679999999999999999999998999999999864432 23466889999999999999999999964 34788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 78 ~lv~e~~~~~~l~~~~~~~~-----------~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl 143 (311)
T 4agu_A 78 HLVFEYCDHTVLHELDRYQR-----------GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKL 143 (311)
T ss_dssp EEEEECCSEEHHHHHHHTSS-----------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEE
T ss_pred EEEEEeCCCchHHHHHhhhc-----------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEE
Confidence 99999999999998876543 589999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||.+......... .....||..|+|||++.+ ..++.++||||+|+++|||++|+.||...... ........
T Consensus 144 ~Dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~ 217 (311)
T 4agu_A 144 CDFGFARLLTGPSDY----YDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV--DQLYLIRK 217 (311)
T ss_dssp CCCTTCEECC----------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHH
T ss_pred eeCCCchhccCcccc----cCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHH
Confidence 999999865533221 123458999999999876 67899999999999999999999998643211 11111111
Q ss_pred HHhhhhh---h------hhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVI---D------IVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~---~------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
....... . ........+..... ........++.++.+++.+||+.||++|||++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 218 TLGDLIPRHQQVFSTNQYFSGVKIPDPEDME---------PLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp HHCSCCHHHHHHHHTCGGGTTCCCCCCSSCC---------CHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred HhcccccccccccccccccccCcCCCccccc---------hhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 1110000 0 00000000000000 000011356778999999999999999999999985
No 180
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=5.5e-39 Score=348.13 Aligned_cols=256 Identities=23% Similarity=0.375 Sum_probs=207.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccc-------
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDF------- 734 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------- 734 (988)
.++|++.+.||+|+||.||+|++..+++.||+|+++... +.+.+|++++++++||||+++++++...++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 356899999999999999999998899999999997543 456789999999999999999998754211
Q ss_pred ----cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCe
Q 001974 735 ----QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNV 810 (988)
Q Consensus 735 ----~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 810 (988)
......++||||+++++|.+++..... ..+++..++.++.||+.||+|||+. +|+||||||+||
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Ni 153 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG---------EKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNI 153 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGGG---------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhccC---------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHE
Confidence 123557999999999999999964321 3689999999999999999999998 999999999999
Q ss_pred eeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCC
Q 001974 811 LLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGD 890 (988)
Q Consensus 811 ll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 890 (988)
++++++.+||+|||++......... ....|++.|+|||++.+..++.++||||||+++|||++|..|+...
T Consensus 154 l~~~~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---- 224 (284)
T 2a19_B 154 FLVDTKQVKIGDFGLVTSLKNDGKR-----TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET---- 224 (284)
T ss_dssp EEEETTEEEECCCTTCEESSCCSCC-----CCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH----
T ss_pred EEcCCCCEEECcchhheeccccccc-----cccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH----
Confidence 9999999999999999866543221 2245899999999999999999999999999999999999885310
Q ss_pred cchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHH
Q 001974 891 LNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQS 970 (988)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~ 970 (988)
......+ .+. ..+..++..+.+++.+||+.||++|||+.|+++.|+.
T Consensus 225 --------~~~~~~~---~~~----------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~ 271 (284)
T 2a19_B 225 --------SKFFTDL---RDG----------------------IISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTV 271 (284)
T ss_dssp --------HHHHHHH---HTT----------------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred --------HHHHHHh---hcc----------------------cccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence 0000000 000 0112456778999999999999999999999999999
Q ss_pred HHHHh
Q 001974 971 VKNAL 975 (988)
Q Consensus 971 i~~~~ 975 (988)
+++..
T Consensus 272 ~~~~~ 276 (284)
T 2a19_B 272 WKKSP 276 (284)
T ss_dssp HTC--
T ss_pred HhhCC
Confidence 86553
No 181
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=8.6e-39 Score=353.88 Aligned_cols=275 Identities=25% Similarity=0.403 Sum_probs=211.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEE--EEEEeecc-ccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIV--AIKVFNLQ-RHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~v--avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|++..+++.+ |+|+++.. .....+.+.+|+++++++ +||||+++++++.. +
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-----~ 98 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----R 98 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE-----T
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeee-----C
Confidence 367999999999999999999998888765 99988643 233456789999999999 99999999999643 4
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhh-----hHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVE-----IEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~-----~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
+..++||||+++++|.+++........... .....+++.+++.++.||+.||+|||+. +|+||||||+||++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~ 175 (327)
T 1fvr_A 99 GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILV 175 (327)
T ss_dssp TEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred CceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEE
Confidence 789999999999999999976531000000 0013689999999999999999999998 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDL 891 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~ 891 (988)
+.++.+||+|||+++....... .....+++.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus 176 ~~~~~~kL~Dfg~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--- 247 (327)
T 1fvr_A 176 GENYVAKIADFGLSRGQEVYVK-----KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--- 247 (327)
T ss_dssp CGGGCEEECCTTCEESSCEECC-----C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH---
T ss_pred cCCCeEEEcccCcCcccccccc-----ccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH---
Confidence 9999999999999974332211 112347889999999988889999999999999999998 9999863211
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSV 971 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 971 (988)
... .+.+... .....+..+++++.+++.+||+.||++|||++|+++.|+++
T Consensus 248 --~~~-----~~~~~~~----------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 298 (327)
T 1fvr_A 248 --AEL-----YEKLPQG----------------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298 (327)
T ss_dssp --HHH-----HHHGGGT----------------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --HHH-----HHHhhcC----------------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 010 0011000 01122335678899999999999999999999999999999
Q ss_pred HHHhhhhccc
Q 001974 972 KNALLEAWNC 981 (988)
Q Consensus 972 ~~~~~~~~~~ 981 (988)
.++.....+.
T Consensus 299 ~~~~~~~~~~ 308 (327)
T 1fvr_A 299 LEERKTYVNT 308 (327)
T ss_dssp HHSSSCSBCC
T ss_pred HHhhcCcccc
Confidence 8876554433
No 182
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.4e-38 Score=349.00 Aligned_cols=261 Identities=20% Similarity=0.243 Sum_probs=200.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++..... ...+.+.+|+.++++++||||+++++++.. ++
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~~ 107 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI-----DG 107 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TT
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----CC
Confidence 4789999999999999999999988999999999964422 224678899999999999999999999643 47
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 108 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~ 173 (309)
T 2h34_A 108 QLYVDMRLINGVDLAAMLRRQ-----------GPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFA 173 (309)
T ss_dssp EEEEEEECCCCEEHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCE
T ss_pred eEEEEEEecCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCE
Confidence 899999999999999998643 2689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||++......... ......|++.|+|||++.+..++.++||||||+++|||++|+.||..... ....
T Consensus 174 kl~Dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------~~~~ 244 (309)
T 2h34_A 174 YLVDFGIASATTDEKLT---QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQL------SVMG 244 (309)
T ss_dssp EECSCCC-------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH------HHHH
T ss_pred EEecCccCccccccccc---cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH------HHHH
Confidence 99999999765443211 11234589999999999999999999999999999999999999863211 0111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-CHHHHHHHHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-SITNVVHELQSVKNA 974 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~i~~~ 974 (988)
....... . . .......++.++.+++.+||+.||++|| +++++++.|+++.+.
T Consensus 245 ~~~~~~~----~-----~---------------~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 245 AHINQAI----P-----R---------------PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp HHHHSCC----C-----C---------------GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred HHhccCC----C-----C---------------ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence 1110000 0 0 0011235778899999999999999999 999999999876543
No 183
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=379.12 Aligned_cols=262 Identities=22% Similarity=0.383 Sum_probs=206.0
Q ss_pred CCCCCc-eeccccceeEEEEEEC--CCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 664 GFSSTH-LIGMGSFGSVYKGAFD--QDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 664 ~y~~~~-~lg~G~~g~Vy~a~~~--~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
++.+.+ .||+|+||.||+|.+. .++..||||+++... ....+.+.+|++++++++||||++++++|.. +.
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~ 409 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EA 409 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SS
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CC
Confidence 333444 7999999999999875 356679999997543 3355789999999999999999999999642 45
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++|+|.+++.... ..+++.+++.++.||+.||+|||++ +||||||||+|||++.++.+|
T Consensus 410 ~~lv~E~~~~g~L~~~l~~~~----------~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vk 476 (613)
T 2ozo_A 410 LMLVMEMAGGGPLHKFLVGKR----------EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAK 476 (613)
T ss_dssp EEEEEECCTTCBHHHHHTTCT----------TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEE
T ss_pred eEEEEEeCCCCcHHHHHhhcc----------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEE
Confidence 899999999999999997653 3689999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++.......... ......+++.|+|||++.+..++.++|||||||++|||++ |+.||...... .. .
T Consensus 477 L~DFGla~~~~~~~~~~~-~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~---~- 549 (613)
T 2ozo_A 477 ISDFGLSKALGADDSYYT-ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EV---M- 549 (613)
T ss_dssp ECCCSTTTTCC---------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HH---H-
T ss_pred EeeccCcccccCCCceee-eccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HH---H-
Confidence 999999987643322111 1122346789999999998999999999999999999998 99998743211 00 0
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
+.+.. ......+..+++++.++|.+||+.||++||+++++++.|+.+..+...
T Consensus 550 ----~~i~~----------------------~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~ 602 (613)
T 2ozo_A 550 ----AFIEQ----------------------GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602 (613)
T ss_dssp ----HHHHT----------------------TCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred ----HHHHc----------------------CCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence 00000 001122346888999999999999999999999999999999877654
No 184
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1.2e-38 Score=350.08 Aligned_cols=269 Identities=23% Similarity=0.294 Sum_probs=202.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|.+..+|+.||+|+++... ....+.+.+|+.++++++||||+++++++.. ++
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~ 105 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----DN 105 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TT
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----CC
Confidence 457999999999999999999998899999999997432 3345678899999999999999999999654 47
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++..... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 106 ~~~lv~e~~~~~~L~~~l~~~~~-------~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~ 175 (310)
T 2wqm_A 106 ELNIVLELADAGDLSRMIKHFKK-------QKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVV 175 (310)
T ss_dssp EEEEEEECCCSCBHHHHHHHHHH-------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred cEEEEEecCCCCCHHHHHHHhcc-------cccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCE
Confidence 88999999999999999853210 113589999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||++........ ......|++.|+|||++.+..++.++||||||+++|||++|+.||..... .......
T Consensus 176 kl~Dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~~~~ 248 (310)
T 2wqm_A 176 KLGDLGLGRFFSSKTT----AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---NLYSLCK 248 (310)
T ss_dssp EECCC----------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C---CHHHHHH
T ss_pred EEEeccceeeecCCCc----cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch---hHHHHHH
Confidence 9999999986543221 11234589999999999999999999999999999999999999863211 1111111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhhhh
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALLEA 978 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~ 978 (988)
. +... ... ......++.++.+++.+||+.||++|||++++++.|+++.......
T Consensus 249 ~-----~~~~---~~~------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~ 302 (310)
T 2wqm_A 249 K-----IEQC---DYP------------------PLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS 302 (310)
T ss_dssp H-----HHTT---CSC------------------CCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred H-----hhcc---cCC------------------CCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence 0 0000 000 0011246778999999999999999999999999999998876553
No 185
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=354.90 Aligned_cols=274 Identities=21% Similarity=0.233 Sum_probs=199.7
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeeccccc---ccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSID---FQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~---~~~ 736 (988)
...+|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|+.+++++. ||||+++++++.... ...
T Consensus 26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 3457999999999999999999999899999999987666666678999999999995 999999999874221 134
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC--eEeccCCCCCeeeCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP--VLHCDLKPGNVLLDN 814 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~~ 814 (988)
....++||||+ +|+|.+++..... ...+++.+++.++.||+.||+|||+. + |+||||||+||+++.
T Consensus 106 ~~~~~lv~e~~-~g~L~~~l~~~~~--------~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~ 173 (337)
T 3ll6_A 106 QAEFLLLTELC-KGQLVEFLKKMES--------RGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSN 173 (337)
T ss_dssp SEEEEEEEECC-SEEHHHHHHHHHT--------TCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECT
T ss_pred CceEEEEEEec-CCCHHHHHHHhhc--------cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECC
Confidence 45689999999 5899988854211 13589999999999999999999998 7 999999999999999
Q ss_pred CCcEEEeeecccccccccccccc--------eeccccccccccccCccc---CCCCCCCccchHHHHHHHHHHHhCCCCC
Q 001974 815 DMIAHVGDFGLARVRQEVSNLTQ--------SCSVGVRGTIGYAAPEYG---LGSEVSTNGDIYSYGILLLEMVTGKKPT 883 (988)
Q Consensus 815 ~~~~kL~DfG~a~~~~~~~~~~~--------~~~~~~~gt~~y~aPE~~---~~~~~~~~sDvwslG~vl~elltg~~p~ 883 (988)
++.+||+|||+++.......... .......||+.|+|||++ .+..++.++|||||||++|||++|+.||
T Consensus 174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~ 253 (337)
T 3ll6_A 174 QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPF 253 (337)
T ss_dssp TSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCC
Confidence 99999999999987654322110 011134589999999998 5667899999999999999999999998
Q ss_pred CccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHH
Q 001974 884 DVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITN 963 (988)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e 963 (988)
...... ........ .......+..+.+++.+||+.||++|||++|
T Consensus 254 ~~~~~~-----------------~~~~~~~~------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e 298 (337)
T 3ll6_A 254 EDGAKL-----------------RIVNGKYS------------------IPPHDTQYTVFHSLIRAMLQVNPEERLSIAE 298 (337)
T ss_dssp -----------------------------CC------------------CCTTCCSSGGGHHHHHHHSCSSGGGSCCHHH
T ss_pred cchhHH-----------------HhhcCccc------------------CCcccccchHHHHHHHHHccCChhhCcCHHH
Confidence 632110 00000000 0111234556889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccc
Q 001974 964 VVHELQSVKNALLEAWNC 981 (988)
Q Consensus 964 vl~~L~~i~~~~~~~~~~ 981 (988)
+++.|+++.+........
T Consensus 299 ~l~~l~~~~~~~~~~~~~ 316 (337)
T 3ll6_A 299 VVHQLQEIAAARNVNPKS 316 (337)
T ss_dssp HHHHHHHHHHHTTCCTTS
T ss_pred HHHHHHHHHhccCCCCCc
Confidence 999999998765544433
No 186
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=3.6e-39 Score=372.22 Aligned_cols=249 Identities=23% Similarity=0.289 Sum_probs=195.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+|+.||||+++.. .......+.+|+.+++.++||||+++++++.. ++
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-----~~ 221 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-----HD 221 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-----TT
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-----CC
Confidence 46799999999999999999999999999999999743 23334567889999999999999999999653 47
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHc-CCCCCeEeccCCCCCeeeCCCCc
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHH-HCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
..++||||+++|+|.+++... ..+++..+..++.||+.||+|||+ . +||||||||+|||++.++.
T Consensus 222 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~ 287 (446)
T 4ejn_A 222 RLCFVMEYANGGELFFHLSRE-----------RVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGH 287 (446)
T ss_dssp EEEEEECCCSSCBHHHHHHHH-----------SCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSC
T ss_pred EEEEEEeeCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCC
Confidence 899999999999999988543 368999999999999999999998 7 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||+|+....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... .....
T Consensus 288 ~kl~DFG~a~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-----~~~~~ 358 (446)
T 4ejn_A 288 IKITDFGLCKEGIKDGA----TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD-----HEKLF 358 (446)
T ss_dssp EEECCCCCCCTTCC---------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHH
T ss_pred EEEccCCCceeccCCCc----ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC-----HHHHH
Confidence 99999999975332211 1223569999999999999999999999999999999999999986321 11111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-----CHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-----SITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 966 (988)
... .......+..+++++.+++.+||+.||++|| +++|+++
T Consensus 359 ~~i----------------------------~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 359 ELI----------------------------LMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHH----------------------------HHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHH----------------------------HhCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 110 0011112335677899999999999999999 9999986
No 187
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=362.44 Aligned_cols=288 Identities=20% Similarity=0.295 Sum_probs=215.7
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||+||+|++..+|+.||||+++... ....+.+.+|++++++++||||+++++++... .....
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~---~~~~~ 84 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRHK 84 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCCE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccC---CCCee
Confidence 457999999999999999999999899999999997433 23346788999999999999999999986532 33578
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee----CCCC
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL----DNDM 816 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~ 816 (988)
++||||+++|+|.+++...... ..+++.+++.++.||+.||+|||+. +|+||||||+||++ +.++
T Consensus 85 ~lv~e~~~~g~L~~~l~~~~~~--------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 153 (396)
T 4eut_A 85 VLIMEFCPCGSLYTVLEEPSNA--------YGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQS 153 (396)
T ss_dssp EEEECCCTTEEHHHHTTSGGGT--------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCE
T ss_pred EEEEecCCCCCHHHHHHhhhcc--------cCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCce
Confidence 9999999999999999764311 2389999999999999999999999 99999999999999 7888
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCC--------CCCCCccchHHHHHHHHHHHhCCCCCCcccc
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG--------SEVSTNGDIYSYGILLLEMVTGKKPTDVMFE 888 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~sDvwslG~vl~elltg~~p~~~~~~ 888 (988)
.+||+|||+++........ ....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....
T Consensus 154 ~~kL~DFG~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~ 228 (396)
T 4eut_A 154 VYKLTDFGAARELEDDEQF-----VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG 228 (396)
T ss_dssp EEEECCGGGCEECCCGGGS-----SCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTC
T ss_pred eEEEecCCCceEccCCCcc-----ccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCc
Confidence 8999999999876543221 23458999999998764 4678899999999999999999999875433
Q ss_pred CCcchHHHHHHHHhhhhhhhhccc--cccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 889 GDLNLHNYARTALLDHVIDIVDPI--LINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.... ...............+... ......+|..... .........+..+.+++.+||+.||++|||++|+++
T Consensus 229 ~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~ 302 (396)
T 4eut_A 229 PRRN-KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMP-----VSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA 302 (396)
T ss_dssp TTTC-HHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCC-----TTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred ccch-HHHHHHHhcCCCcccchhheeccCCCcccCccCC-----cccccchHHHhhchHHHHHhhccChhhhccHHHHHH
Confidence 2222 1222222221111100000 0000111111000 000112356778999999999999999999999999
Q ss_pred HHHHHHHH
Q 001974 967 ELQSVKNA 974 (988)
Q Consensus 967 ~L~~i~~~ 974 (988)
.++++.+.
T Consensus 303 ~l~~il~~ 310 (396)
T 4eut_A 303 ETSDILHR 310 (396)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhc
Confidence 99988654
No 188
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.9e-39 Score=358.10 Aligned_cols=280 Identities=21% Similarity=0.247 Sum_probs=198.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhcCCCCceEEEeeccccc-ccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNIRHRNLVKVITSCSSID-FQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 738 (988)
.++|++.+.||+|+||.||+|.+..+|+.||||++... .....+.+.+|+++++.++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 57899999999999999999999999999999998543 2233467889999999999999999999975431 12224
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+ +++|.+++.. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~------------~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~ 167 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH------------EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCEL 167 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred eEEEEEecC-CCCHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCE
Confidence 569999999 8999999854 2588999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||+++..... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ......
T Consensus 168 kl~Dfg~a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~l~~i 238 (367)
T 1cm8_A 168 KILDFGLARQADSE-------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL--DQLKEI 238 (367)
T ss_dssp EECCCTTCEECCSS-------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHH
T ss_pred EEEeeecccccccc-------cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHH
Confidence 99999999865432 123468999999999877 67999999999999999999999998632110 000001
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.........+............+...................++.+.+++.+||+.||++|||++|+++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 239 MKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 000000000000000000000000000000000001112356788999999999999999999999987
No 189
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.2e-38 Score=358.01 Aligned_cols=290 Identities=21% Similarity=0.220 Sum_probs=209.4
Q ss_pred HHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 658 LFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 658 l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
.....++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|++++++++||||+++++++.......
T Consensus 22 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 101 (364)
T 3qyz_A 22 VFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQ 101 (364)
T ss_dssp BCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTT
T ss_pred eccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccc
Confidence 3344578999999999999999999999999999999997433 233467889999999999999999999987654455
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
....++||||++ |+|.+++.. ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 102 ~~~~~iv~e~~~-~~L~~~l~~------------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~ 165 (364)
T 3qyz_A 102 MKDVYIVQDLME-TDLYKLLKT------------QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTC 165 (364)
T ss_dssp CCCEEEEEECCS-EEHHHHHHH------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTC
T ss_pred cceEEEEEcccC-cCHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCC
Confidence 567899999995 699988853 2589999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+++......... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ....
T Consensus 166 ~~kl~Dfg~a~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~ 242 (364)
T 3qyz_A 166 DLKICDFGLARVADPDHDHT-GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL--DQLN 242 (364)
T ss_dssp CEEECCCTTCEECCGGGCBC-CTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGG--GHHH
T ss_pred CEEEEeCcceEecCCCCCcc-ccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChH--HHHH
Confidence 99999999998665432211 11223469999999998654 55899999999999999999999998643211 1111
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...........+............+..................++.++.+++.+||+.||++|||++|+++
T Consensus 243 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 243 HILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 11111111100000000000000000000000000000112346778999999999999999999999986
No 190
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=9.3e-39 Score=352.03 Aligned_cols=267 Identities=22% Similarity=0.272 Sum_probs=200.0
Q ss_pred hCCCCCC-ceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSST-HLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~-~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.+.|++. +.||+|+||.||+|++..+++.||||+++.......+.+.+|++++.++ +||||+++++++. .++.
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~-----~~~~ 85 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFE-----EEDR 85 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----eCCE
Confidence 3568774 7899999999999999889999999999866555667899999999995 7999999999964 3478
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc--
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI-- 817 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-- 817 (988)
.++||||+++++|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 86 ~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~ 151 (316)
T 2ac3_A 86 FYLVFEKMRGGSILSHIHKR-----------RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVS 151 (316)
T ss_dssp EEEEEECCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSC
T ss_pred EEEEEEcCCCCcHHHHHhcc-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcC
Confidence 99999999999999998643 3689999999999999999999999 9999999999999998776
Q ss_pred -EEEeeecccccccccccc---cceeccccccccccccCcccCC-----CCCCCccchHHHHHHHHHHHhCCCCCCcccc
Q 001974 818 -AHVGDFGLARVRQEVSNL---TQSCSVGVRGTIGYAAPEYGLG-----SEVSTNGDIYSYGILLLEMVTGKKPTDVMFE 888 (988)
Q Consensus 818 -~kL~DfG~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDvwslG~vl~elltg~~p~~~~~~ 888 (988)
+||+|||++......... .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....
T Consensus 152 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~ 231 (316)
T 2ac3_A 152 PVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCG 231 (316)
T ss_dssp SEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCC
T ss_pred ceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccc
Confidence 999999999765432111 1111223458999999999875 4688999999999999999999999975433
Q ss_pred CCcchHHHH-----HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHH
Q 001974 889 GDLNLHNYA-----RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITN 963 (988)
Q Consensus 889 ~~~~~~~~~-----~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e 963 (988)
.+..+.... .....+.+.. ....... .....++.++.+++.+||+.||++|||++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~----------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e 292 (316)
T 2ac3_A 232 SDCGWDRGEACPACQNMLFESIQE---GKYEFPD----------------KDWAHISCAAKDLISKLLVRDAKQRLSAAQ 292 (316)
T ss_dssp SCSCC----CCHHHHHHHHHHHHH---CCCCCCH----------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred ccccccccccchhHHHHHHHHHhc---cCcccCc----------------hhcccCCHHHHHHHHHHhhCChhhCCCHHH
Confidence 321111000 0000010000 0000000 001246778999999999999999999999
Q ss_pred HHH
Q 001974 964 VVH 966 (988)
Q Consensus 964 vl~ 966 (988)
+++
T Consensus 293 ~l~ 295 (316)
T 2ac3_A 293 VLQ 295 (316)
T ss_dssp HHH
T ss_pred Hhc
Confidence 987
No 191
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=1.6e-38 Score=351.37 Aligned_cols=264 Identities=19% Similarity=0.237 Sum_probs=205.8
Q ss_pred cCHHHHHHhhCCCCCC-ceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhc-CCCCceEEEee
Q 001974 653 VSYESLFKATDGFSST-HLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNI-RHRNLVKVITS 728 (988)
Q Consensus 653 ~~~~~l~~~~~~y~~~-~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~~~~~ 728 (988)
+.+.......++|.+. +.||+|+||.||+|++..+++.||+|+++... ......+.+|+.+++++ +||||++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~ 97 (327)
T 3lm5_A 18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV 97 (327)
T ss_dssp CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence 3444444556678777 89999999999999999899999999997433 23357889999999999 56999999999
Q ss_pred cccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCC
Q 001974 729 CSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPG 808 (988)
Q Consensus 729 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 808 (988)
+. .++..++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||+. +|+||||||+
T Consensus 98 ~~-----~~~~~~lv~e~~~~~~L~~~~~~~~~---------~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~ 160 (327)
T 3lm5_A 98 YE-----NTSEIILILEYAAGGEIFSLCLPELA---------EMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQ 160 (327)
T ss_dssp EE-----CSSEEEEEEECCTTEEGGGGGSSCC----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGG
T ss_pred EE-----eCCeEEEEEEecCCCcHHHHHHHhcc---------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChH
Confidence 54 45789999999999999999865432 3689999999999999999999999 9999999999
Q ss_pred CeeeCC---CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 809 NVLLDN---DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 809 NIll~~---~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
||+++. ++.+||+|||+++........ ....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 161 NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~ 235 (327)
T 3lm5_A 161 NILLSSIYPLGDIKIVDFGMSRKIGHACEL-----REIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVG 235 (327)
T ss_dssp GEEESCBTTBCCEEECCGGGCEEC--------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HEEEecCCCCCcEEEeeCccccccCCcccc-----ccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 999998 789999999999866443221 224589999999999999999999999999999999999999863
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH
Q 001974 886 MFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVV 965 (988)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 965 (988)
.... ..... +... .... .......++..+.+++.+||+.||++|||++|++
T Consensus 236 ~~~~-----~~~~~-----i~~~---~~~~----------------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll 286 (327)
T 3lm5_A 236 EDNQ-----ETYLN-----ISQV---NVDY----------------SEETFSSVSQLATDFIQSLLVKNPEKRPTAEICL 286 (327)
T ss_dssp SSHH-----HHHHH-----HHHT---CCCC----------------CTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred CCch-----HHHHH-----HHhc---cccc----------------CchhhcccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 2110 00000 0000 0000 0011225677899999999999999999999997
Q ss_pred HH
Q 001974 966 HE 967 (988)
Q Consensus 966 ~~ 967 (988)
+.
T Consensus 287 ~h 288 (327)
T 3lm5_A 287 SH 288 (327)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 192
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=1.5e-38 Score=363.06 Aligned_cols=253 Identities=21% Similarity=0.273 Sum_probs=194.6
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--------chhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--------GASKSFLAECKALKNIRHRNLVKVITSCSSI 732 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 732 (988)
..++|.+.+.||+|+||+||+|.+..+++.||||++..... .....+.+|++++++++||||+++++++.
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-- 210 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-- 210 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE--
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe--
Confidence 35789999999999999999999999999999999864321 12235789999999999999999999853
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
.+..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||++
T Consensus 211 ----~~~~~lv~e~~~~g~L~~~l~~~~-----------~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll 272 (419)
T 3i6u_A 211 ----AEDYYIVLELMEGGELFDKVVGNK-----------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLL 272 (419)
T ss_dssp ----SSEEEEEEECCTTCBGGGGTSSSC-----------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred ----cCceEEEEEcCCCCcHHHHHhccC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEE
Confidence 245799999999999999987653 689999999999999999999998 99999999999999
Q ss_pred CCC---CcEEEeeecccccccccccccceeccccccccccccCcccCC---CCCCCccchHHHHHHHHHHHhCCCCCCcc
Q 001974 813 DND---MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG---SEVSTNGDIYSYGILLLEMVTGKKPTDVM 886 (988)
Q Consensus 813 ~~~---~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwslG~vl~elltg~~p~~~~ 886 (988)
+.+ +.+||+|||+|+....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus 273 ~~~~~~~~~kl~DFG~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~ 347 (419)
T 3i6u_A 273 SSQEEDCLIKITDFGHSKILGETSL-----MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 347 (419)
T ss_dssp SSSSSSCCEEECCSSTTTSCC----------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred ecCCCcceEEEeecccceecCCCcc-----ccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence 754 4599999999987654322 123468999999999864 57888999999999999999999998743
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.... ....... .. ...... .....+++++.+++.+||+.||++|||++|+++
T Consensus 348 ~~~~-~~~~~i~----~~-------~~~~~~----------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 348 RTQV-SLKDQIT----SG-------KYNFIP----------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp SSSC-CHHHHHH----TT-------CCCCCH----------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cchH-HHHHHHh----cC-------CCCCCc----------------hhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 2211 1111110 00 000000 011246778999999999999999999999986
No 193
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-37 Score=358.09 Aligned_cols=345 Identities=28% Similarity=0.392 Sum_probs=227.7
Q ss_pred CCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCcccee
Q 001974 78 RLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESI 157 (988)
Q Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (988)
.+++|+.|++++|.+. .+|. +..+++|++|+|++|++++..+ |.++++|++|++++|.+++..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 4678999999999998 5664 8899999999999999986554 9999999999999999996554 8999999999
Q ss_pred eccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceecccccc
Q 001974 158 SLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFF 237 (988)
Q Consensus 158 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l 237 (988)
++++|.+++..+ +.++++|++|+|++|.+++. + .+..+++|++|+++ |.+. .++. +..+++|+.|++++|.+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVT-DLKP--LANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-Cccc-Cchh--hccCCCCCEEECcCCcC
Confidence 999999986533 89999999999999999853 3 58899999999996 5555 3332 55778888888888888
Q ss_pred ccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCC
Q 001974 238 SGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRG 317 (988)
Q Consensus 238 ~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 317 (988)
++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++ .+..+++|++|++++|++++
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEECCSSCCCC
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--------hhhcCCCCCEEECCCCcccc
Confidence 754 246777777777777777776655 566777777777777766531 34556666666666666653
Q ss_pred CCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCC
Q 001974 318 ALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLG 397 (988)
Q Consensus 318 ~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 397 (988)
..| +..+ ++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..| +.
T Consensus 258 ~~~--~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 258 LAP--LSGL-TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp CGG--GTTC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred chh--hhcC-CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 322 2222 245555555555553322 4445555555555555543222 4445555555555555544333 44
Q ss_pred CCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceeccccccc
Q 001974 398 NLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLV 462 (988)
Q Consensus 398 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~ 462 (988)
.+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..++.+ +.|++++|.++
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~~~ 388 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI-TQLGLNDQAWT 388 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC-CEEECCCEEEE
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC-CEEeccCCccc
Confidence 445555555555555432 234445555555555555543333 4444444 44444444444
No 194
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=2.4e-38 Score=342.97 Aligned_cols=248 Identities=22% Similarity=0.339 Sum_probs=204.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++. .++
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 87 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----DRK 87 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----cCC
Confidence 367999999999999999999999899999999986432 223467899999999999999999999954 447
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~ 153 (284)
T 2vgo_A 88 RIYLMLEFAPRGELYKELQKH-----------GRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGEL 153 (284)
T ss_dssp EEEEEECCCTTEEHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCE
T ss_pred EEEEEEEeCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCE
Confidence 889999999999999998643 2589999999999999999999998 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||++....... .....|++.|+|||++.+..++.++||||||+++|||++|+.||...... ....
T Consensus 154 kl~Dfg~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~ 222 (284)
T 2vgo_A 154 KIADFGWSVHAPSLR------RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT-----ETHR 222 (284)
T ss_dssp EECCCTTCEECSSSC------BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHH
T ss_pred EEecccccccCcccc------cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh-----HHHH
Confidence 999999987544321 12345899999999999999999999999999999999999998632110 0000
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.+. ......+..++.++.+++.+||+.||++|||++|+++.
T Consensus 223 -----~~~-----------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 223 -----RIV-----------------------NVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp -----HHH-----------------------TTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred -----HHh-----------------------ccccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 000 00111223467789999999999999999999999873
No 195
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=5.6e-39 Score=354.15 Aligned_cols=249 Identities=22% Similarity=0.263 Sum_probs=179.7
Q ss_pred CceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCCCceEEEEee
Q 001974 668 THLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGNDFKALVYEF 746 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~~lv~e~ 746 (988)
.+.||+|+||+||+|++..+++.||||++... ....+.+|+.+++.+. ||||+++++++. ++...++||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~-----~~~~~~lv~e~ 87 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFH-----DQLHTFLVMEL 87 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSEEEEEECC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEE-----cCCEEEEEEEc
Confidence 47899999999999999999999999998643 3467889999999996 999999999954 45789999999
Q ss_pred ccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC---cEEEeee
Q 001974 747 MTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM---IAHVGDF 823 (988)
Q Consensus 747 ~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kL~Df 823 (988)
+++|+|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+||+++.++ .+||+||
T Consensus 88 ~~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Df 153 (325)
T 3kn6_A 88 LNGGELFERIKKKK-----------HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDF 153 (325)
T ss_dssp CCSCBHHHHHHHCS-----------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCC
T ss_pred cCCCcHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEecc
Confidence 99999999996543 689999999999999999999998 999999999999997765 8999999
Q ss_pred cccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCC--cchHHHHHHHH
Q 001974 824 GLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGD--LNLHNYARTAL 901 (988)
Q Consensus 824 G~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~--~~~~~~~~~~~ 901 (988)
|+++........ .....||+.|+|||++.+..++.++||||+||++|||++|+.||....... .........
T Consensus 154 g~a~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~-- 227 (325)
T 3kn6_A 154 GFARLKPPDNQP----LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKK-- 227 (325)
T ss_dssp TTCEECCC--------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHH--
T ss_pred ccceecCCCCCc----ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHH--
Confidence 999865432211 123458999999999999999999999999999999999999987432210 011111100
Q ss_pred hhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 902 LDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 902 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+........... ...+++++.+++.+||+.||++|||++|+++
T Consensus 228 ------i~~~~~~~~~~~----------------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 228 ------IKKGDFSFEGEA----------------WKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp ------HTTTCCCCCSHH----------------HHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred ------HHcCCCCCCccc----------------ccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 000000000111 1246778999999999999999999999873
No 196
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=1.8e-38 Score=352.53 Aligned_cols=279 Identities=23% Similarity=0.351 Sum_probs=214.8
Q ss_pred HHHhhCCCCCCceeccccceeEEEEEECCCCe-----EEEEEEeecccc-chhHHHHHHHHHHHhc-CCCCceEEEeecc
Q 001974 658 LFKATDGFSSTHLIGMGSFGSVYKGAFDQDGT-----IVAIKVFNLQRH-GASKSFLAECKALKNI-RHRNLVKVITSCS 730 (988)
Q Consensus 658 l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~-----~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~ 730 (988)
+....++|++.+.||+|+||.||+|.+..+++ .||+|+++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 120 (333)
T 2i1m_A 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT 120 (333)
T ss_dssp GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 34456789999999999999999999876554 799999975432 3456789999999999 8999999999964
Q ss_pred cccccCCCceEEEEeeccccchhhhcCCCCCC---CchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCC
Q 001974 731 SIDFQGNDFKALVYEFMTNGSLENWLHPDAVP---QKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKP 807 (988)
Q Consensus 731 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~---~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 807 (988)
.++..++||||+++|+|.+++...... ..........+++..++.++.||+.||+|||+. +|+||||||
T Consensus 121 -----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 192 (333)
T 2i1m_A 121 -----HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAA 192 (333)
T ss_dssp -----SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred -----cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCccc
Confidence 347889999999999999998643100 000000123579999999999999999999998 999999999
Q ss_pred CCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCcc
Q 001974 808 GNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVM 886 (988)
Q Consensus 808 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~ 886 (988)
+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||+| |..||...
T Consensus 193 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 270 (333)
T 2i1m_A 193 RNVLLTNGHVAKIGDFGLARDIMNDSNY--IVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 270 (333)
T ss_dssp GGCEEEGGGEEEBCCCGGGCCGGGCTTS--EECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred ceEEECCCCeEEECccccccccccccce--eecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 9999999999999999999865443221 12223457889999999988899999999999999999999 99998643
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.... ......... .....+..++..+.+++.+||+.||++|||++|+++
T Consensus 271 ~~~~-----~~~~~~~~~--------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~ 319 (333)
T 2i1m_A 271 LVNS-----KFYKLVKDG--------------------------YQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 319 (333)
T ss_dssp CSSH-----HHHHHHHHT--------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred chhH-----HHHHHHhcC--------------------------CCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence 2110 000000000 001112346778999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 001974 967 ELQSVKNALLE 977 (988)
Q Consensus 967 ~L~~i~~~~~~ 977 (988)
.|+++.++...
T Consensus 320 ~L~~~~~~~~~ 330 (333)
T 2i1m_A 320 FLQEQAQEDRR 330 (333)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhc
Confidence 99998776543
No 197
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2.5e-38 Score=367.69 Aligned_cols=257 Identities=23% Similarity=0.322 Sum_probs=206.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|+++.+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ..+
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~-----~~~ 258 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFE-----TKT 258 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----eCC
Confidence 467999999999999999999999899999999996432 233467889999999999999999999854 457
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++|+|.+++....... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 259 ~l~lVmE~~~gg~L~~~l~~~~~~~-------~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~v 328 (543)
T 3c4z_A 259 DLCLVMTIMNGGDIRYHIYNVDEDN-------PGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNV 328 (543)
T ss_dssp EEEEEECCCTTCBHHHHHHTSSTTS-------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCE
T ss_pred EEEEEEEeccCCCHHHHHHHhhccc-------ccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCE
Confidence 8999999999999999986543211 2689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||+++........ .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... .......
T Consensus 329 kL~DFGla~~~~~~~~~----~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~-~~~~~~~ 403 (543)
T 3c4z_A 329 RISDLGLAVELKAGQTK----TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQ 403 (543)
T ss_dssp EECCCTTCEECCTTCCC----BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC-CHHHHHH
T ss_pred EEeecceeeeccCCCcc----cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch-hHHHHHH
Confidence 99999999865443221 223469999999999999999999999999999999999999997432111 1111111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCH-----HHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSI-----TNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 966 (988)
. +.......+..++.++.+++.+||+.||++||++ +|+++
T Consensus 404 ~----------------------------i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 404 R----------------------------VLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp H----------------------------HHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred H----------------------------HhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 0 0011112233567889999999999999999975 55653
No 198
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.1e-38 Score=354.80 Aligned_cols=247 Identities=25% Similarity=0.340 Sum_probs=198.3
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
+.|+..+.||+|+||+||+|++..+++.||||++..... ...+.+.+|++++++++||||+++++++.. ++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~ 128 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT 128 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCe
Confidence 458889999999999999999988999999999974432 233578899999999999999999999653 478
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||++ |++.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 129 ~~lv~e~~~-g~l~~~l~~~~----------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~k 194 (348)
T 1u5q_A 129 AWLVMEYCL-GSASDLLEVHK----------KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVK 194 (348)
T ss_dssp EEEEEECCS-EEHHHHHHHHT----------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEE
T ss_pred EEEEEecCC-CCHHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEE
Confidence 999999996 78887774322 3689999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccC---CCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL---GSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
|+|||++...... ....||+.|+|||++. ...++.++|||||||++|||++|+.||..... ...
T Consensus 195 L~DfG~a~~~~~~--------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~-----~~~ 261 (348)
T 1u5q_A 195 LGDFGSASIMAPA--------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-----MSA 261 (348)
T ss_dssp ECCCTTCBSSSSB--------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHH
T ss_pred EeeccCceecCCC--------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh-----HHH
Confidence 9999999765432 1245899999999974 56789999999999999999999999863211 111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
... +.....+. .....++..+.+++.+||+.||++|||++|+++.
T Consensus 262 ~~~-----~~~~~~~~---------------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 262 LYH-----IAQNESPA---------------------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp HHH-----HHHSCCCC---------------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred HHH-----HHhcCCCC---------------------CCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 100 00000000 0112456779999999999999999999999753
No 199
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=3.8e-38 Score=352.45 Aligned_cols=283 Identities=23% Similarity=0.306 Sum_probs=203.7
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccc---cC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDF---QG 736 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---~~ 736 (988)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ......+.+|++++++++||||+++++++..... ..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 467999999999999999999999899999999986433 2334678899999999999999999999765321 11
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
++..++||||++ +++.+.+.... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 96 ~~~~~lv~e~~~-~~l~~~l~~~~----------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~ 161 (351)
T 3mi9_A 96 KGSIYLVFDFCE-HDLAGLLSNVL----------VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDG 161 (351)
T ss_dssp -CEEEEEEECCS-EEHHHHHHCTT----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTS
T ss_pred CceEEEEEeccC-CCHHHHHhhcc----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCC
Confidence 457899999996 57777775543 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+++.................||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ....
T Consensus 162 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~ 239 (351)
T 3mi9_A 162 VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ--HQLA 239 (351)
T ss_dssp CEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHH
T ss_pred CEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChH--HHHH
Confidence 99999999998765433322233344568999999999876 56899999999999999999999998742111 1111
Q ss_pred HHHHHHhhhhhhhhccc----cccCcc---hhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 896 YARTALLDHVIDIVDPI----LINDVE---DWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~----l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...........+..... ...... .........+. ....++.+.+++.+||+.||++|||++|+++
T Consensus 240 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 240 LISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLK------AYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp HHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHH------HHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHhCCCChhhccccccchhhcccccccccccCHHHHhh------hccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 11111000000000000 000000 00000000000 0012566899999999999999999999986
No 200
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.9e-38 Score=343.69 Aligned_cols=259 Identities=20% Similarity=0.279 Sum_probs=205.1
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc------chhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH------GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
++|++.+.||+|+||.||+|++..+++.||+|+++.... ...+.+.+|+.++++++||||+++++++. .
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~ 79 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE-----N 79 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----C
Confidence 568999999999999999999998999999999874422 13578999999999999999999999964 3
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
+...++||||+++++|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 80 ~~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~ 145 (283)
T 3bhy_A 80 KTDVVLILELVSGGELFDFLAEK-----------ESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKN 145 (283)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSS
T ss_pred CCeEEEEEeecCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCC
Confidence 47889999999999999998542 3689999999999999999999998 999999999999998877
Q ss_pred ----cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcc
Q 001974 817 ----IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN 892 (988)
Q Consensus 817 ----~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 892 (988)
.+||+|||.+......... ....|++.|+|||++.+..++.++||||||+++|+|++|+.||.....
T Consensus 146 ~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---- 216 (283)
T 3bhy_A 146 VPNPRIKLIDFGIAHKIEAGNEF-----KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK---- 216 (283)
T ss_dssp SSSCCEEECCCTTCEECC-------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH----
T ss_pred CCCCceEEEecccceeccCCCcc-----cccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch----
Confidence 8999999999865443221 224589999999999999999999999999999999999999864211
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH--HHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH--ELQS 970 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~ 970 (988)
...... +.. ...... ......++..+.+++.+||+.||++|||++|+++ .+++
T Consensus 217 -~~~~~~-----~~~---~~~~~~----------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~ 271 (283)
T 3bhy_A 217 -QETLTN-----ISA---VNYDFD----------------EEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA 271 (283)
T ss_dssp -HHHHHH-----HHT---TCCCCC----------------HHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred -HHHHHH-----hHh---cccCCc----------------chhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence 011000 000 000000 0011246678999999999999999999999997 4566
Q ss_pred HHHH
Q 001974 971 VKNA 974 (988)
Q Consensus 971 i~~~ 974 (988)
+..+
T Consensus 272 ~~~~ 275 (283)
T 3bhy_A 272 IRRR 275 (283)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 5443
No 201
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.4e-38 Score=344.76 Aligned_cols=250 Identities=20% Similarity=0.271 Sum_probs=205.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++. .++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~ 88 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 88 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeec-----cCC
Confidence 467999999999999999999999899999999986442 234567889999999999999999999964 347
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 89 ~~~lv~e~~~~~~L~~~~~~~-----------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~ 154 (294)
T 2rku_A 89 FVFVVLELCRRRSLLELHKRR-----------KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEV 154 (294)
T ss_dssp EEEEEEECCTTCBHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred EEEEEEecCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCE
Confidence 889999999999999987543 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||.+......... .....||+.|+|||++.+..++.++||||||+++|||++|+.||..... .....
T Consensus 155 kl~dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~ 225 (294)
T 2rku_A 155 KIGDFGLATKVEYDGER----KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYL 225 (294)
T ss_dssp EECCCTTCEECCSTTCC----BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHH
T ss_pred EEEeccCceecccCccc----cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHH
Confidence 99999999865432211 1224589999999999998999999999999999999999999864211 00000
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
. + .......+..++..+.+++.+||+.||++|||++|+++.
T Consensus 226 ~-----~-----------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 226 R-----I-----------------------KKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp H-----H-----------------------HTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred H-----H-----------------------hhccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 0 0 000111223566789999999999999999999999874
No 202
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.8e-38 Score=345.05 Aligned_cols=252 Identities=25% Similarity=0.372 Sum_probs=200.9
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..|.+.+.||+|+||.||+|.+..++..||+|++.... ....+.+.+|+.++++++||||+++++++... ...+...
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~ 104 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCI 104 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceE
Confidence 34778889999999999999999999999999987443 33456789999999999999999999987643 3345678
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC--eEeccCCCCCeeeC-CCCc
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP--VLHCDLKPGNVLLD-NDMI 817 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlkp~NIll~-~~~~ 817 (988)
++||||+++++|.+++... ..+++..++.++.||+.||+|||+. + |+||||||+||+++ +++.
T Consensus 105 ~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~ 170 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRF-----------KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGS 170 (290)
T ss_dssp EEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSC
T ss_pred EEEEEecCCCCHHHHHHHc-----------cCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCC
Confidence 9999999999999998643 3689999999999999999999998 7 99999999999998 7899
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
+||+|||++....... .....||+.|+|||++.+ .++.++||||+||++|+|++|+.||...... ....
T Consensus 171 ~kl~Dfg~~~~~~~~~------~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~ 239 (290)
T 1t4h_A 171 VKIGDLGLATLKRASF------AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIY 239 (290)
T ss_dssp EEECCTTGGGGCCTTS------BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHH
T ss_pred EEEeeCCCcccccccc------cccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcH----HHHH
Confidence 9999999997544322 122458999999998764 5899999999999999999999998642111 1111
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.. +.....+ .......++++.+++.+||+.||++|||++|+++
T Consensus 240 ~~-----~~~~~~~---------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 240 RR-----VTSGVKP---------------------ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HH-----HTTTCCC---------------------GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HH-----HhccCCc---------------------cccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 10 0000000 0111245567999999999999999999999985
No 203
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=1.1e-38 Score=353.69 Aligned_cols=253 Identities=20% Similarity=0.271 Sum_probs=199.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||.||+|+++.+++.||+|+++.... ...+|++++.++ +||||+++++++. +++..
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~-----~~~~~ 91 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYD-----DGKYV 91 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEE-----CSSEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEE-----cCCEE
Confidence 4679999999999999999999999999999999975432 245788888888 7999999999954 45889
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC----C
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND----M 816 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~----~ 816 (988)
++||||+++|+|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+||++.++ +
T Consensus 92 ~lv~E~~~gg~L~~~i~~~~-----------~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~ 157 (342)
T 2qr7_A 92 YVVTELMKGGELLDKILRQK-----------FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPE 157 (342)
T ss_dssp EEEECCCCSCBHHHHHHTCT-----------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGG
T ss_pred EEEEeCCCCCcHHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcC
Confidence 99999999999999987543 589999999999999999999999 99999999999998543 3
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+++........ .....||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....
T Consensus 158 ~~kl~Dfg~a~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~ 231 (342)
T 2qr7_A 158 SIRICDFGFAKQLRAENGL----LMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEI 231 (342)
T ss_dssp GEEECCCTTCEECBCTTCC----BCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS--CHHHH
T ss_pred eEEEEECCCcccCcCCCCc----eeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC--CHHHH
Confidence 5999999999865443221 22346899999999998888999999999999999999999998742111 11111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.... .. ....... .....++.++.+++.+||+.||++|||++|+++.
T Consensus 232 ~~~i-~~-------~~~~~~~----------------~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 232 LARI-GS-------GKFSLSG----------------GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp HHHH-HH-------CCCCCCS----------------TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred HHHH-cc-------CCcccCc----------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 1110 00 0000000 0112467789999999999999999999998864
No 204
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=1.7e-38 Score=347.72 Aligned_cols=251 Identities=22% Similarity=0.280 Sum_probs=201.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
.++|.+.+.||+|+||.||+|++..+|+.||+|+++.......+.+.+|+.++++++||||+++++++. .++..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 82 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYE-----STTHYY 82 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcc-----cCCEEE
Confidence 457899999999999999999999899999999998655445567899999999999999999999854 457899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee---CCCCcE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL---DNDMIA 818 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~ 818 (988)
+||||+++++|.+++... ..+++.+++.++.|++.||+|||+. +|+||||||+||++ ++++.+
T Consensus 83 lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~ 148 (304)
T 2jam_A 83 LVMQLVSGGELFDRILER-----------GVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKI 148 (304)
T ss_dssp EEECCCCSCBHHHHHHHH-----------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCE
T ss_pred EEEEcCCCccHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCE
Confidence 999999999999988543 3689999999999999999999999 99999999999999 788999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||++....... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ....
T Consensus 149 kl~Dfg~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~- 216 (304)
T 2jam_A 149 MITDFGLSKMEQNGI------MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE-----SKLF- 216 (304)
T ss_dssp EBCSCSTTCCCCCBT------THHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHH-
T ss_pred EEccCCcceecCCCc------cccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHH-
Confidence 999999997543321 1223589999999999999999999999999999999999999863211 1111
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+.+.. ...... ......++.++.+++.+||+.||++|||++|+++
T Consensus 217 ----~~i~~---~~~~~~----------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 217 ----EKIKE---GYYEFE----------------SPFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp ----HHHHH---CCCCCC----------------TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ----HHHHc---CCCCCC----------------ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00100 000000 0111256778999999999999999999999986
No 205
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=4.4e-39 Score=355.64 Aligned_cols=277 Identities=22% Similarity=0.352 Sum_probs=213.5
Q ss_pred CHHHHHHhhCCCCCCceeccccceeEEEEEEC-----CCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEe
Q 001974 654 SYESLFKATDGFSSTHLIGMGSFGSVYKGAFD-----QDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVIT 727 (988)
Q Consensus 654 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~ 727 (988)
..+++....++|++.+.||+|+||.||+|++. .+++.||+|++..... .....+.+|+.++++++||||+++++
T Consensus 16 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~ 95 (322)
T 1p4o_A 16 VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLG 95 (322)
T ss_dssp CCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred ChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence 34455566788999999999999999999875 3578899999874432 33457889999999999999999999
Q ss_pred ecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCC
Q 001974 728 SCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKP 807 (988)
Q Consensus 728 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp 807 (988)
++. .++..++||||+++|+|.+++........ .......+++..++.++.||+.||+|||++ +|+||||||
T Consensus 96 ~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp 166 (322)
T 1p4o_A 96 VVS-----QGQPTLVIMELMTRGDLKSYLRSLRPAMA-NNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAA 166 (322)
T ss_dssp EEC-----SSSSCEEEEECCTTCBHHHHHHHHHHHHH-HCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSG
T ss_pred EEc-----cCCccEEEEEeCCCCcHHHHHHHhchhhc-cCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCcc
Confidence 954 44788999999999999999864210000 000002568999999999999999999999 999999999
Q ss_pred CCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCcc
Q 001974 808 GNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVM 886 (988)
Q Consensus 808 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~ 886 (988)
+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 167 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~ 244 (322)
T 1p4o_A 167 RNCMVAEDFTVKIGDFGMTRDIYETDYY--RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL 244 (322)
T ss_dssp GGEEECTTCCEEECCTTCCCGGGGGGCE--EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred ceEEEcCCCeEEECcCcccccccccccc--ccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC
Confidence 9999999999999999999865443221 11223357889999999998899999999999999999999 89998632
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.. ........ .. .....+..++..+.+++.+||+.||++|||++|+++
T Consensus 245 ~~-----~~~~~~~~--------~~-------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~ 292 (322)
T 1p4o_A 245 SN-----EQVLRFVM--------EG-------------------GLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIIS 292 (322)
T ss_dssp CH-----HHHHHHHH--------TT-------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CH-----HHHHHHHH--------cC-------------------CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence 11 11111000 00 001123357788999999999999999999999999
Q ss_pred HHHHHHH
Q 001974 967 ELQSVKN 973 (988)
Q Consensus 967 ~L~~i~~ 973 (988)
.|+++.+
T Consensus 293 ~L~~~~~ 299 (322)
T 1p4o_A 293 SIKEEME 299 (322)
T ss_dssp HHGGGSC
T ss_pred HHHHhhc
Confidence 9988644
No 206
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=3e-38 Score=340.72 Aligned_cols=249 Identities=26% Similarity=0.376 Sum_probs=196.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++. .++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-----TPT 84 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----cCC
Confidence 467999999999999999999998899999999996432 233467899999999999999999999954 347
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~ 150 (276)
T 2h6d_A 85 DFFMVMEYVSGGELFDYICKH-----------GRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNA 150 (276)
T ss_dssp EEEEEEECCCSCBHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCE
T ss_pred eEEEEEeccCCCcHHHHHhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCE
Confidence 899999999999999998643 2588999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||.+........ .....|++.|+|||.+.+..+ +.++||||||+++|+|++|+.||.... .....
T Consensus 151 ~l~dfg~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~~ 220 (276)
T 2h6d_A 151 KIADFGLSNMMSDGEF-----LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH-----VPTLF 220 (276)
T ss_dssp EECCCCGGGCCCC------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHH
T ss_pred EEeecccccccCCCcc-----eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc-----HHHHH
Confidence 9999999986544321 122458999999999988765 689999999999999999999986321 11110
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
. .+. ......+..++.++.+++.+||+.||++|||++|+++.
T Consensus 221 ~-----~~~-----------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 221 K-----KIR-----------------------GGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp H-----HHH-----------------------HCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred H-----Hhh-----------------------cCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 0 000 00011123456789999999999999999999999874
No 207
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.2e-38 Score=345.18 Aligned_cols=253 Identities=25% Similarity=0.305 Sum_probs=197.0
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++. ..+..+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~~ 96 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFE-----DYHNMY 96 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhee-----cCCeEE
Confidence 56899999999999999999999899999999997543 234578899999999999999999999964 447899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee---CCCCcE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL---DNDMIA 818 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~ 818 (988)
+||||+++|+|.+++.... .....+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+
T Consensus 97 lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~ 166 (285)
T 3is5_A 97 IVMETCEGGELLERIVSAQ-------ARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPI 166 (285)
T ss_dssp EEECCCSCCBHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCE
T ss_pred EEEEeCCCCcHHHHHHhhh-------hcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCE
Confidence 9999999999999885321 1113689999999999999999999998 99999999999999 456789
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||++........ .....||+.|+|||++. ..++.++||||||+++|||++|+.||.... ......
T Consensus 167 kl~Dfg~a~~~~~~~~-----~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~-----~~~~~~ 235 (285)
T 3is5_A 167 KIIDFGLAELFKSDEH-----STNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS-----LEEVQQ 235 (285)
T ss_dssp EECCCCCCCC---------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH
T ss_pred EEEeeecceecCCccc-----CcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC-----HHHHHh
Confidence 9999999986544322 12345899999999876 468899999999999999999999986421 111110
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
..... .+.. .......++++.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~------~~~~-------------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 236 KATYK------EPNY-------------------AVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHC------CCCC-------------------CC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred hhccC------Cccc-------------------ccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00000 0000 0011235678899999999999999999999985
No 208
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1e-38 Score=357.44 Aligned_cols=282 Identities=21% Similarity=0.262 Sum_probs=188.8
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhcCCCCceEEEeecccc-cccCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNIRHRNLVKVITSCSSI-DFQGN 737 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~~ 737 (988)
..++|++.+.||+|+||.||+|.+..+|+.||||++... .....+.+.+|+++++.++||||+++++++... .....
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 357899999999999999999999999999999998643 223456788999999999999999999987543 12234
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++|+||+ +++|.+++... .+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~~------------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~ 170 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKCQ------------KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCE 170 (367)
T ss_dssp CCCEEEEECC-CEECC-----C------------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCC
T ss_pred CeEEEEeccc-CCCHHHHHhcC------------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCC
Confidence 6689999999 89999988642 589999999999999999999998 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ......
T Consensus 171 ~kL~DFG~a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~l~~ 241 (367)
T 2fst_X 171 LKILDFGLARHTADE-------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH--IDQLKL 241 (367)
T ss_dssp EEECC----------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHH
T ss_pred EEEeecccccccccc-------CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHH
Confidence 999999999864432 123468999999999887 6789999999999999999999999864211 011111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
..........+.+..........+.......-...........++.+.+|+.+||+.||++|||++|+++.
T Consensus 242 i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 242 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp HHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 11111110011110000000000000000000000000112456789999999999999999999999863
No 209
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2.3e-38 Score=378.49 Aligned_cols=254 Identities=23% Similarity=0.385 Sum_probs=201.4
Q ss_pred ceeccccceeEEEEEE--CCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceEEEE
Q 001974 669 HLIGMGSFGSVYKGAF--DQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKALVY 744 (988)
Q Consensus 669 ~~lg~G~~g~Vy~a~~--~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~ 744 (988)
+.||+|+||.||+|.+ +..++.||||+++.... ...+++.+|++++++++||||++++++|.. +..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~------~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------CCEEEEE
Confidence 4799999999999965 45678999999975432 335789999999999999999999998642 4578999
Q ss_pred eeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEeeec
Q 001974 745 EFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVGDFG 824 (988)
Q Consensus 745 e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG 824 (988)
||+++|+|.+++... ..+++.+++.|+.||+.||+|||++ +||||||||+|||++.++.+||+|||
T Consensus 449 E~~~~g~L~~~l~~~-----------~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFG 514 (635)
T 4fl3_A 449 EMAELGPLNKYLQQN-----------RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFG 514 (635)
T ss_dssp ECCTTEEHHHHHHHC-----------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTT
T ss_pred EccCCCCHHHHHhhC-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcC
Confidence 999999999999643 2689999999999999999999999 99999999999999999999999999
Q ss_pred ccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHHHHHhh
Q 001974 825 LARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYARTALLD 903 (988)
Q Consensus 825 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 903 (988)
+|+......... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ... +
T Consensus 515 la~~~~~~~~~~-~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~-----~~~-----~ 583 (635)
T 4fl3_A 515 LSKALRADENYY-KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS-----EVT-----A 583 (635)
T ss_dssp HHHHTTC--------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-----HHH-----H
T ss_pred CccccccCcccc-ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHH-----H
Confidence 998765433211 11222346789999999999999999999999999999998 99998642111 000 0
Q ss_pred hhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 904 HVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 904 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
.+.. ......+..++.++.++|.+||+.||++|||+++|++.|+++...+
T Consensus 584 ~i~~----------------------~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l 633 (635)
T 4fl3_A 584 MLEK----------------------GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 633 (635)
T ss_dssp HHHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHc----------------------CCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 0000 0011223467889999999999999999999999999999987654
No 210
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=6e-39 Score=354.27 Aligned_cols=277 Identities=22% Similarity=0.314 Sum_probs=196.4
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc-hhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceE
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG-ASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
++|++.+.||+|+||+||+|++..+++.||+|+++..... ....+.+|++++++++||||+++++++. .++..+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEE-----CSSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEe-----eCCEEE
Confidence 5799999999999999999999989999999998643322 2234567999999999999999999954 457899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEe
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVG 821 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~ 821 (988)
+||||++ |+|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 77 lv~e~~~-~~l~~~~~~~~----------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~ 142 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDCG----------NIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLA 142 (324)
T ss_dssp EEEECCS-EEHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEEC
T ss_pred EEecccc-cCHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEc
Confidence 9999995 69998886543 3589999999999999999999999 99999999999999999999999
Q ss_pred eecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHH
Q 001974 822 DFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTA 900 (988)
Q Consensus 822 DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 900 (988)
|||+++....... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... .........
T Consensus 143 Dfg~a~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~--~~~~~i~~~ 216 (324)
T 3mtl_A 143 DFGLARAKSIPTK----TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE--EQLHFIFRI 216 (324)
T ss_dssp SSSEEECC----------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHH
T ss_pred cCcccccccCCcc----ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHH
Confidence 9999975443221 1123458999999999876 56899999999999999999999998642111 111111111
Q ss_pred HhhhhhhhhccccccCcchhhhhh-HHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 901 LLDHVIDIVDPILINDVEDWDATN-KQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 901 ~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
............... ..+.... ..............+++++.+++.+||+.||++|||++|+++
T Consensus 217 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 217 LGTPTEETWPGILSN--EEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HCCCCTTTSTTGGGC--HHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hCCCChHhchhhhcc--hhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 111000000000000 0000000 000000001112356778999999999999999999999986
No 211
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-39 Score=357.25 Aligned_cols=272 Identities=13% Similarity=0.175 Sum_probs=208.5
Q ss_pred hCCCCCCceeccccceeEEEEEECC--------CCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEE--------
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQ--------DGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKV-------- 725 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~-------- 725 (988)
.++|++.+.||+|+||.||+|++.. .++.||+|++... +.+.+|++++++++||||+++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3689999999999999999999976 4789999998643 467899999999999999884
Q ss_pred -------EeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 001974 726 -------ITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQE 798 (988)
Q Consensus 726 -------~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~ 798 (988)
++++. ..+...++||||+ +++|.+++.... ...+++.+++.++.||+.||+|||++
T Consensus 116 ~~~i~~~~~~~~----~~~~~~~lv~e~~-~~~L~~~l~~~~---------~~~l~~~~~~~i~~qi~~~L~~LH~~--- 178 (352)
T 2jii_A 116 LLAIPTCMGFGV----HQDKYRFLVLPSL-GRSLQSALDVSP---------KHVLSERSVLQVACRLLDALEFLHEN--- 178 (352)
T ss_dssp TCSCCCCCEEEE----ETTTEEEEEEECC-CEEHHHHHHHSG---------GGCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccCccchhhccc----cCCcEEEEEecCC-CcCHHHHHHhCC---------cCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 44432 2357889999999 999999997542 14689999999999999999999999
Q ss_pred CeEeccCCCCCeeeCCCC--cEEEeeeccccccccccccc---ceeccccccccccccCcccCCCCCCCccchHHHHHHH
Q 001974 799 PVLHCDLKPGNVLLDNDM--IAHVGDFGLARVRQEVSNLT---QSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILL 873 (988)
Q Consensus 799 ~ivH~Dlkp~NIll~~~~--~~kL~DfG~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl 873 (988)
+|+||||||+||+++.++ .+||+|||+++......... ........||+.|+|||++.+..++.++|||||||++
T Consensus 179 ~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il 258 (352)
T 2jii_A 179 EYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCM 258 (352)
T ss_dssp TCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHH
Confidence 999999999999999998 99999999998665432211 1112234699999999999999999999999999999
Q ss_pred HHHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCc
Q 001974 874 LEMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVE 953 (988)
Q Consensus 874 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 953 (988)
|||++|+.||................ .........+. . .....++.++.+++.+||+.
T Consensus 259 ~el~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~----------------~~~~~~~~~l~~li~~~l~~ 316 (352)
T 2jii_A 259 LKWLYGFLPWTNCLPNTEDIMKQKQK-FVDKPGPFVGP-----C----------------GHWIRPSETLQKYLKVVMAL 316 (352)
T ss_dssp HHHHHSCCTTGGGTTCHHHHHHHHHH-HHHSCCCEECT-----T----------------SCEECCCHHHHHHHHHHHTC
T ss_pred HHHHhCCCCcccCCcCHHHHHHHHHh-ccCChhhhhhh-----c----------------cccCCCcHHHHHHHHHHHhC
Confidence 99999999987532221111111100 00000000000 0 00124578899999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhh
Q 001974 954 SPQDRMSITNVVHELQSVKNALLE 977 (988)
Q Consensus 954 dP~~RPs~~evl~~L~~i~~~~~~ 977 (988)
||++|||++|+++.|+++.++...
T Consensus 317 dp~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 317 TYEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred ChhhCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999877543
No 212
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.6e-38 Score=350.96 Aligned_cols=250 Identities=20% Similarity=0.271 Sum_probs=205.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++. +++
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~ 114 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 114 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCC
Confidence 467999999999999999999999899999999986442 234567889999999999999999999964 447
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... ..+++.+++.++.||+.||+|||++ +|+||||||+||+++.++.+
T Consensus 115 ~~~lv~e~~~~~~L~~~~~~~-----------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~ 180 (335)
T 2owb_A 115 FVFVVLELCRRRSLLELHKRR-----------KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEV 180 (335)
T ss_dssp EEEEEECCCTTCBHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCE
T ss_pred eEEEEEecCCCCCHHHHHhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCE
Confidence 899999999999999987543 3689999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+|||++......... .....||..|+|||++.+..++.++||||||+++|||++|+.||..... .....
T Consensus 181 kl~Dfg~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~ 251 (335)
T 2owb_A 181 KIGDFGLATKVEYDGER----KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYL 251 (335)
T ss_dssp EECCCTTCEECCSTTCC----BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHH
T ss_pred EEeeccCceecccCccc----ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH-----HHHHH
Confidence 99999999865432211 1234589999999999998999999999999999999999999863211 01000
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
. +.......+..++..+.+++.+||+.||++|||++|+++.
T Consensus 252 ~----------------------------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 252 R----------------------------IKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp H----------------------------HHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred H----------------------------HhcCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0 0001111223466778999999999999999999999874
No 213
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=4.8e-38 Score=362.35 Aligned_cols=269 Identities=23% Similarity=0.280 Sum_probs=209.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCC-CceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHR-NLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~-niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.++||+|+||.||+|++..+++.||||++..... ...+..|+++++.++|+ ++..+..++ ...+..
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~-----~~~~~~ 78 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFG-----VEGDYN 78 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEE-----EETTEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEE-----eeCCEE
Confidence 4689999999999999999999988999999999864432 34688999999999774 444444442 235788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee---CCCCc
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL---DNDMI 817 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~~~ 817 (988)
++||||+ +++|.+++.... ..+++.+++.|+.||+.||+|||++ +||||||||+|||+ +.++.
T Consensus 79 ~lvme~~-g~sL~~ll~~~~----------~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~ 144 (483)
T 3sv0_A 79 VLVMDLL-GPSLEDLFNFCS----------RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQ 144 (483)
T ss_dssp EEEEECC-CCBHHHHHHHTT----------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTC
T ss_pred EEEEECC-CCCHHHHHHhhc----------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCe
Confidence 9999999 999999996433 3689999999999999999999999 99999999999999 68899
Q ss_pred EEEeeeccccccccccccc---ceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 818 AHVGDFGLARVRQEVSNLT---QSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
+||+|||+++......... ........||..|+|||++.+..++.++|||||||++|||++|+.||....... ..
T Consensus 145 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~--~~ 222 (483)
T 3sv0_A 145 VYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT--KK 222 (483)
T ss_dssp EEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS--HH
T ss_pred EEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchh--HH
Confidence 9999999998765433211 111224569999999999999999999999999999999999999997543221 11
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
............. ........++.++.+++.+||+.||++||++++|++.|+++...
T Consensus 223 ~~~~~i~~~~~~~-----------------------~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 223 QKYEKISEKKVAT-----------------------SIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp HHHHHHHHHHHHS-----------------------CHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccc-----------------------cHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 1111100000000 00011125678899999999999999999999999999999775
Q ss_pred hh
Q 001974 975 LL 976 (988)
Q Consensus 975 ~~ 976 (988)
..
T Consensus 280 ~~ 281 (483)
T 3sv0_A 280 EG 281 (483)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 214
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=9.3e-38 Score=341.72 Aligned_cols=251 Identities=24% Similarity=0.319 Sum_probs=206.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.+.|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++.. ++..
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 95 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DTKL 95 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CCeE
Confidence 467999999999999999999998899999999997543 3345789999999999999999999998653 4788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 96 ~lv~e~~~~~~L~~~~~~~------------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 160 (303)
T 3a7i_A 96 WIIMEYLGGGSALDLLEPG------------PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKL 160 (303)
T ss_dssp EEEEECCTTEEHHHHHTTS------------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEE
T ss_pred EEEEEeCCCCcHHHHHhcC------------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEE
Confidence 9999999999999998642 588999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTA 900 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 900 (988)
+|||.+........ ......|++.|+|||++.+..++.++||||||+++|||++|+.||...... ....
T Consensus 161 ~Dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~-- 229 (303)
T 3a7i_A 161 ADFGVAGQLTDTQI----KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM-----KVLF-- 229 (303)
T ss_dssp CCCTTCEECBTTBC----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHH--
T ss_pred eecccceecCcccc----ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH-----HHHH--
Confidence 99999986544321 112346899999999999999999999999999999999999998632110 0000
Q ss_pred HhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHH
Q 001974 901 LLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHEL 968 (988)
Q Consensus 901 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L 968 (988)
.+... ........++..+.+++.+||+.||++|||++|+++..
T Consensus 230 ---~~~~~----------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 230 ---LIPKN----------------------NPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp ---HHHHS----------------------CCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred ---HhhcC----------------------CCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence 00000 00111235677899999999999999999999998753
No 215
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=3.4e-38 Score=349.07 Aligned_cols=268 Identities=23% Similarity=0.386 Sum_probs=204.7
Q ss_pred hCCCCCCceeccccceeEEEEE-----ECCCCeEEEEEEeecc-ccchhHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGA-----FDQDGTIVAIKVFNLQ-RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~-----~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
.++|++.+.||+|+||.||+|+ ...+++.||||++... .......+.+|+.++++++||||+++++++.
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 103 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 103 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc-----
Confidence 4679999999999999999999 4457789999999643 2334567899999999999999999999954
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC-
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN- 814 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~- 814 (988)
.++..++||||+++++|.+++........ ....+++.+++.++.||+.||+|||+. +|+||||||+||+++.
T Consensus 104 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~----~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~ 176 (327)
T 2yfx_A 104 QSLPRFILMELMAGGDLKSFLRETRPRPS----QPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCP 176 (327)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHTSCCSS----STTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCS
T ss_pred CCCCcEEEEecCCCCcHHHHHHhhccccc----ccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecC
Confidence 34778999999999999999976532111 113589999999999999999999999 9999999999999984
Q ss_pred --CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCc
Q 001974 815 --DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDL 891 (988)
Q Consensus 815 --~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~ 891 (988)
+..+||+|||++.......... ......|++.|+|||++.+..++.++||||||+++|||+| |+.||.....
T Consensus 177 ~~~~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--- 251 (327)
T 2yfx_A 177 GPGRVAKIGDFGMARDIYRASYYR--KGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--- 251 (327)
T ss_dssp STTCCEEECCCHHHHHHHC--------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---
T ss_pred CCcceEEECccccccccccccccc--cCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH---
Confidence 4469999999998554322111 1223457899999999988899999999999999999998 9999863211
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSV 971 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 971 (988)
..... .+.. ......+..++..+.+++.+||+.||++|||++|+++.|+.+
T Consensus 252 --~~~~~-----~~~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~ 302 (327)
T 2yfx_A 252 --QEVLE-----FVTS----------------------GGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302 (327)
T ss_dssp --HHHHH-----HHHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --HHHHH-----HHhc----------------------CCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 11110 0000 000112235678899999999999999999999999999998
Q ss_pred HHHh
Q 001974 972 KNAL 975 (988)
Q Consensus 972 ~~~~ 975 (988)
...-
T Consensus 303 ~~~~ 306 (327)
T 2yfx_A 303 TQDP 306 (327)
T ss_dssp HHCH
T ss_pred hcCH
Confidence 7643
No 216
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=360.35 Aligned_cols=329 Identities=21% Similarity=0.194 Sum_probs=226.8
Q ss_pred eeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccC
Q 001974 24 GITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYC 103 (988)
Q Consensus 24 ~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (988)
+|.|..... .++.++++++ .+|..+. +++++|+|++|+|++..|..|.++++|++|+|++|.+++..|..|+++
T Consensus 6 ~C~C~~~~~---~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 79 (477)
T 2id5_A 6 RCECSAQDR---AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79 (477)
T ss_dssp TCEEETTTT---EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCeECCCCC---EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC
Confidence 345543322 3455667777 5666553 588999999999998888899999999999999999998889999999
Q ss_pred CCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCccccccccc
Q 001974 104 SRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGL 183 (988)
Q Consensus 104 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 183 (988)
++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 99999999999998777778889999999999999998877888888888888888888888777888888888888888
Q ss_pred ccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccC
Q 001974 184 GANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSG 263 (988)
Q Consensus 184 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~ 263 (988)
++|++++..+..+.++++|+.|++++|.+. .++.. .|..+++|+.|++++|.+.+
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~------------------------~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDY------------------------SFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTT------------------------CSCSCTTCCEEEEECCTTCC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChh------------------------hcccCcccceeeCCCCcccc
Confidence 888888766677777777777777777776 33433 34444555555555554444
Q ss_pred cccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccC
Q 001974 264 KLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGS 343 (988)
Q Consensus 264 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~ 343 (988)
..+.......+|+.|++++|.++.++.
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~----------------------------------------------------- 241 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPY----------------------------------------------------- 241 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCH-----------------------------------------------------
T ss_pred ccCcccccCccccEEECcCCcccccCH-----------------------------------------------------
Confidence 444433333355555555554432211
Q ss_pred CCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccc
Q 001974 344 IPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSL 423 (988)
Q Consensus 344 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 423 (988)
..+..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+
T Consensus 242 --~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 242 --LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp --HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred --HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 123334444555555555544444445555555555555555555555556666666666666666665555556666
Q ss_pred cccceeecCCCCCCc
Q 001974 424 KQLAILHLFENGLNG 438 (988)
Q Consensus 424 ~~L~~L~l~~N~l~~ 438 (988)
++|+.|+|++|.+..
T Consensus 320 ~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 320 GNLETLILDSNPLAC 334 (477)
T ss_dssp GGCCEEECCSSCEEC
T ss_pred cccCEEEccCCCccC
Confidence 666666666666653
No 217
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.4e-38 Score=343.90 Aligned_cols=258 Identities=23% Similarity=0.305 Sum_probs=204.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++... .+..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR---TNTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEG---GGTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecC---CCce
Confidence 467999999999999999999999899999999997543 23446789999999999999999999986432 3467
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCC-----eEeccCCCCCeeeCC
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEP-----VLHCDLKPGNVLLDN 814 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~-----ivH~Dlkp~NIll~~ 814 (988)
.++||||+++++|.+++..... ....+++..++.++.|++.||+|||+. + |+||||||+||+++.
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~~-------~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~ 151 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKGTK-------ERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDG 151 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHHHH-------TTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECS
T ss_pred EEEEEeCCCCCCHHHHHHhhcc-------cCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcC
Confidence 8999999999999999864221 112489999999999999999999998 7 999999999999999
Q ss_pred CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 815 DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 815 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
++.+||+|||.++........ .....|++.|+|||++.+..++.++||||||+++|||++|+.||..... .
T Consensus 152 ~~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~ 222 (279)
T 2w5a_A 152 KQNVKLGDFGLARILNHDTSF----AKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ-----K 222 (279)
T ss_dssp SSCEEECCCCHHHHC---CHH----HHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----H
T ss_pred CCCEEEecCchheeecccccc----ccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH-----H
Confidence 999999999999865432211 1224589999999999998999999999999999999999999874311 0
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHEL 968 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L 968 (988)
... ..+... .....+..++.++.+++.+||+.||++|||++|+++.+
T Consensus 223 ~~~-----~~i~~~----------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 223 ELA-----GKIREG----------------------KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp HHH-----HHHHHT----------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred HHH-----HHHhhc----------------------ccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 111 001000 00011235677899999999999999999999998754
No 218
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=3.5e-39 Score=364.05 Aligned_cols=262 Identities=14% Similarity=0.134 Sum_probs=197.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHH---HHHhcCCCCceEEEeecccc--c
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECK---ALKNIRHRNLVKVITSCSSI--D 733 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~---~l~~l~h~niv~~~~~~~~~--~ 733 (988)
.++|++.+.||+|+||+||+|++..+|+.||||++... .....+.+.+|+. ++++++||||+++++.+... .
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46789999999999999999999889999999999732 3344578899994 55555899999998443211 0
Q ss_pred ccCCC-----------------ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC
Q 001974 734 FQGND-----------------FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC 796 (988)
Q Consensus 734 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~ 796 (988)
+..++ ..++||||+ +|+|.+++..... .......+++..++.|+.||+.||+|||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~----~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~- 225 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLS----HSSTHKSLVHHARLQLTLQVIRLLASLHHY- 225 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHH----TTTTTHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccc----cccccccccHHHHHHHHHHHHHHHHHHHhC-
Confidence 11111 378999999 7899999964320 000013455688999999999999999999
Q ss_pred CCCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC-----------CCCCccc
Q 001974 797 QEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-----------EVSTNGD 865 (988)
Q Consensus 797 ~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~sD 865 (988)
+|+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++|
T Consensus 226 --~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D 295 (377)
T 3byv_A 226 --GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFD 295 (377)
T ss_dssp --TEECSCCCGGGEEECTTCCEEECCGGGCEETTC-------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHH
T ss_pred --CeecCCCCHHHEEEcCCCCEEEEechhheecCC-------cccCCCC-cCccChhhhcccccccccccccccCChhhh
Confidence 999999999999999999999999999985332 1123457 999999999887 8999999
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHH
Q 001974 866 IYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVR 945 (988)
Q Consensus 866 vwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 945 (988)
||||||++|||++|+.||......+ .... .......+++++.+
T Consensus 296 vwSlG~il~elltg~~Pf~~~~~~~-------------~~~~------------------------~~~~~~~~~~~~~~ 338 (377)
T 3byv_A 296 AWALGLVIYWIWCADLPITKDAALG-------------GSEW------------------------IFRSCKNIPQPVRA 338 (377)
T ss_dssp HHHHHHHHHHHHHSSCCC------C-------------CSGG------------------------GGSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCccccccc-------------chhh------------------------hhhhccCCCHHHHH
Confidence 9999999999999999986321110 0000 00112356788999
Q ss_pred HhhcccCcCCCCCCCHHHHHH--HHHHHHHHhh
Q 001974 946 IGVACSVESPQDRMSITNVVH--ELQSVKNALL 976 (988)
Q Consensus 946 li~~cl~~dP~~RPs~~evl~--~L~~i~~~~~ 976 (988)
++.+||+.||++|||+.|+++ .++.+.+...
T Consensus 339 li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~~ 371 (377)
T 3byv_A 339 LLEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 371 (377)
T ss_dssp HHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHcCCCchhCCCHHHHhhChHHHHHHHHHH
Confidence 999999999999999999996 5666665543
No 219
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=362.50 Aligned_cols=347 Identities=22% Similarity=0.197 Sum_probs=210.9
Q ss_pred cEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEeccc
Q 001974 203 ANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAY 282 (988)
Q Consensus 203 ~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~ 282 (988)
+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45677777777 7776654 5678888888888877777888888888888888888877777788888888888888
Q ss_pred ccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCc
Q 001974 283 NNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGN 362 (988)
Q Consensus 283 N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 362 (988)
|.++.++.. .|..+++|++|+|++|++++ ..+..|..+++|+.|+|++|
T Consensus 90 n~l~~~~~~------~~~~l~~L~~L~Ls~n~i~~-------------------------~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 90 NRLKLIPLG------VFTGLSNLTKLDISENKIVI-------------------------LLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp SCCCSCCTT------SSTTCTTCCEEECTTSCCCE-------------------------ECTTTTTTCTTCCEEEECCT
T ss_pred CcCCccCcc------cccCCCCCCEEECCCCcccc-------------------------CChhHccccccCCEEECCCC
Confidence 877765543 34455566666666655553 34444555555555555555
Q ss_pred cCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCch
Q 001974 363 QFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPE 442 (988)
Q Consensus 363 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 442 (988)
.+++..+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 55544455555555555555555555544444455555555555555555555555555555555555555555555555
Q ss_pred hhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccc
Q 001974 443 EIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRA 522 (988)
Q Consensus 443 ~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 522 (988)
..+....| ++|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++
T Consensus 219 ~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 219 NCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred ccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 55554455 55666666665333345566666666666666666555556666666666666666666666666666666
Q ss_pred cCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCCCcccCcccccccccccccCCCCC
Q 001974 523 VLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPTKGVFANISRISVAGFNRLCGGIP 585 (988)
Q Consensus 523 L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~~ 585 (988)
|+.|||++|+|++.++.. ..+++|++|+|++|++++..+....+.......+.++...|+.|.
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 666666666666666554 445566666666666665544321111222233445555555443
No 220
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=3e-38 Score=345.54 Aligned_cols=254 Identities=21% Similarity=0.303 Sum_probs=200.1
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++. .++..
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 91 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY-----HDGKL 91 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CC-CE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeee-----eCCeE
Confidence 3567999999999999999999999899999999997666666788999999999999999999999964 34789
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... ..+++.+++.++.||+.||+|||+. +++||||||+||+++.++.+||
T Consensus 92 ~lv~e~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl 158 (302)
T 2j7t_A 92 WIMIEFCPGGAVDAIMLELD----------RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRL 158 (302)
T ss_dssp EEEEECCTTEEHHHHHHHHT----------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEE
T ss_pred EEEEEeCCCCcHHHHHHhhc----------cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEE
Confidence 99999999999999885432 3689999999999999999999999 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCccc-----CCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYG-----LGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
+|||++........ ......||+.|+|||++ .+..++.++||||||+++|||++|+.||..... ..
T Consensus 159 ~Dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~ 229 (302)
T 2j7t_A 159 ADFGVSAKNLKTLQ----KRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP-----MR 229 (302)
T ss_dssp CCCHHHHHHHHHHH----C-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HH
T ss_pred EECCCCcccccccc----ccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH-----HH
Confidence 99999864322111 11224589999999987 467789999999999999999999999864211 11
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
......... .+ ....+..++.++.+++.+||+.||++|||++|+++
T Consensus 230 ~~~~~~~~~-----~~--------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 230 VLLKIAKSD-----PP--------------------TLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HHHHHHHSC-----CC--------------------CCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred HHHHHhccC-----Cc--------------------ccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 110000000 00 00112346778999999999999999999999985
No 221
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=9.9e-38 Score=340.22 Aligned_cols=254 Identities=24% Similarity=0.340 Sum_probs=199.6
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCceEE
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFKAL 742 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l 742 (988)
++|.....||+|+||.||+|++..+++.||+|++........+.+.+|+.+++.++||||+++++++.. .+..++
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~l 96 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-----NGFIKI 96 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEEE
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-----CCcEEE
Confidence 345666799999999999999998999999999987666666889999999999999999999999643 478899
Q ss_pred EEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC-CCcEEEe
Q 001974 743 VYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN-DMIAHVG 821 (988)
Q Consensus 743 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~-~~~~kL~ 821 (988)
||||+++++|.+++...... ..+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+
T Consensus 97 v~e~~~~~~L~~~l~~~~~~--------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~ 165 (295)
T 2clq_A 97 FMEQVPGGSLSALLRSKWGP--------LKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKIS 165 (295)
T ss_dssp EEECCSEEEHHHHHHHTTCC--------CTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEEC
T ss_pred EEEeCCCCCHHHHHHhhccC--------CCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEe
Confidence 99999999999998654321 2467888999999999999999998 9999999999999987 8999999
Q ss_pred eecccccccccccccceeccccccccccccCcccCCCC--CCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 822 DFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSE--VSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 822 DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|||.+........ ......|++.|+|||++.+.. ++.++||||||+++|||++|+.||....... ......
T Consensus 166 Dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~~~ 238 (295)
T 2clq_A 166 DFGTSKRLAGINP----CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQ---AAMFKV 238 (295)
T ss_dssp CTTTCEESCC---------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHH---HHHHHH
T ss_pred ecccccccCCCCC----cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchh---HHHHhh
Confidence 9999986543221 122346899999999987643 7889999999999999999999986321110 000000
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
. ........+..++.++.+++.+||+.||++|||++|+++
T Consensus 239 ----~-----------------------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 239 ----G-----------------------MFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp ----H-----------------------HHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ----c-----------------------cccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 000011122356788999999999999999999999975
No 222
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=6.1e-38 Score=351.64 Aligned_cols=254 Identities=21% Similarity=0.347 Sum_probs=202.4
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--------chhHHHHHHHHHHHhc-CCCCceEEEeecc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--------GASKSFLAECKALKNI-RHRNLVKVITSCS 730 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~niv~~~~~~~ 730 (988)
...++|++.+.||+|+||.||+|++..+|+.||||+++.... ...+.+.+|+.+++++ +||||+++++++.
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 170 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE 170 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence 345679999999999999999999988999999999975432 1235678999999999 8999999999854
Q ss_pred cccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCe
Q 001974 731 SIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNV 810 (988)
Q Consensus 731 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 810 (988)
.....++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||
T Consensus 171 -----~~~~~~lv~e~~~g~~L~~~l~~~-----------~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NI 231 (365)
T 2y7j_A 171 -----SSSFMFLVFDLMRKGELFDYLTEK-----------VALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENI 231 (365)
T ss_dssp -----BSSEEEEEECCCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred -----eCCEEEEEEEeCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHE
Confidence 347899999999999999998532 3689999999999999999999998 999999999999
Q ss_pred eeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCC------CCCCCccchHHHHHHHHHHHhCCCCCC
Q 001974 811 LLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG------SEVSTNGDIYSYGILLLEMVTGKKPTD 884 (988)
Q Consensus 811 ll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~sDvwslG~vl~elltg~~p~~ 884 (988)
+++.++.+||+|||++......... ....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.
T Consensus 232 l~~~~~~ikl~DfG~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~ 306 (365)
T 2y7j_A 232 LLDDNMQIRLSDFGFSCHLEPGEKL-----RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFW 306 (365)
T ss_dssp EECTTCCEEECCCTTCEECCTTCCB-----CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EECCCCCEEEEecCcccccCCCccc-----ccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCC
Confidence 9999999999999999866543221 23468999999998753 368899999999999999999999986
Q ss_pred ccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHH
Q 001974 885 VMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNV 964 (988)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ev 964 (988)
.... ...... +.. ......... ...++..+.+++.+||+.||++|||++|+
T Consensus 307 ~~~~-----~~~~~~-i~~-------~~~~~~~~~----------------~~~~~~~~~~li~~~L~~dP~~Rps~~el 357 (365)
T 2y7j_A 307 HRRQ-----ILMLRM-IME-------GQYQFSSPE----------------WDDRSSTVKDLISRLLQVDPEARLTAEQA 357 (365)
T ss_dssp CSSH-----HHHHHH-HHH-------TCCCCCHHH----------------HSSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCH-----HHHHHH-HHh-------CCCCCCCcc----------------cccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 3210 011100 000 000000000 12456779999999999999999999999
Q ss_pred HH
Q 001974 965 VH 966 (988)
Q Consensus 965 l~ 966 (988)
++
T Consensus 358 l~ 359 (365)
T 2y7j_A 358 LQ 359 (365)
T ss_dssp HH
T ss_pred hc
Confidence 86
No 223
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=351.07 Aligned_cols=252 Identities=24% Similarity=0.354 Sum_probs=194.3
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCC--CCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRH--RNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h--~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+.++++++| |||+++++++. .+
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~-----~~ 81 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TD 81 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECT-TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CS
T ss_pred cCEEEEEEEEecCCCeEEEEEEeC-CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe-----eC
Confidence 467999999999999999999985 789999999975432 334678999999999976 99999999954 44
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++|||+ .+++|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+||+++ ++.
T Consensus 82 ~~~~lv~e~-~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~ 145 (343)
T 3dbq_A 82 QYIYMVMEC-GNIDLNSWLKKKK-----------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGM 145 (343)
T ss_dssp SEEEEEECC-CSEEHHHHHHHSC-----------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTE
T ss_pred CEEEEEEeC-CCCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCc
Confidence 789999995 4899999997543 689999999999999999999999 999999999999997 678
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCC-----------CCCCCccchHHHHHHHHHHHhCCCCCCcc
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-----------SEVSTNGDIYSYGILLLEMVTGKKPTDVM 886 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwslG~vl~elltg~~p~~~~ 886 (988)
+||+|||+++........ .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus 146 ~kl~DFG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 223 (343)
T 3dbq_A 146 LKLIDFGIANQMQPDTTS--VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI 223 (343)
T ss_dssp EEECCCSSSCCC--------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred EEEeecccccccCccccc--ccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhh
Confidence 999999999866443211 11223569999999999754 67889999999999999999999998642
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
... ... ....+++... ...+...+.++.+++.+||+.||++|||++|+++
T Consensus 224 ~~~----~~~--------~~~~~~~~~~------------------~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 224 INQ----ISK--------LHAIIDPNHE------------------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 273 (343)
T ss_dssp CSH----HHH--------HHHHHCTTSC------------------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhH----HHH--------HHHHhcCCcc------------------cCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence 111 000 1111111111 1122245567899999999999999999999986
Q ss_pred H
Q 001974 967 E 967 (988)
Q Consensus 967 ~ 967 (988)
.
T Consensus 274 h 274 (343)
T 3dbq_A 274 H 274 (343)
T ss_dssp S
T ss_pred C
Confidence 4
No 224
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=1.2e-37 Score=350.34 Aligned_cols=202 Identities=25% Similarity=0.276 Sum_probs=165.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeeccccc-ccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSID-FQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~ 738 (988)
.++|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.+++.++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 468999999999999999999999899999999997432 234467889999999999999999999975431 12334
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||++ ++|.+++. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 104 ~~~lv~e~~~-~~l~~~~~-------------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~ 166 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQ-------------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTL 166 (371)
T ss_dssp EEEEEEECCS-EEHHHHHH-------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCE
T ss_pred ceEEEEEcCC-CCHHHHHh-------------hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCE
Confidence 7899999995 67888774 2478899999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
||+|||+++....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 167 kl~Dfg~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 228 (371)
T 2xrw_A 167 KILDFGLARTAGTSFM-----MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 228 (371)
T ss_dssp EECCCCC---------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EEEEeecccccccccc-----cCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999986543221 1234689999999999999999999999999999999999999864
No 225
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2e-38 Score=351.49 Aligned_cols=275 Identities=24% Similarity=0.349 Sum_probs=200.3
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|++..+|+.||+|++..... ...+.+.+|+.++++++||||+++++++.. ++.
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 98 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-----KKR 98 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-----CCE
Confidence 4679999999999999999999998999999999864433 224567899999999999999999999653 478
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++++|.++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 99 ~~lv~e~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~k 164 (331)
T 4aaa_A 99 WYLVFEFVDHTILDDLELFPN-----------GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVK 164 (331)
T ss_dssp EEEEEECCSEEHHHHHHHSTT-----------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEE
T ss_pred EEEEEecCCcchHHHHHhhcc-----------CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEE
Confidence 899999999999988865432 589999999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++........ .....||+.|+|||++.+. .++.++||||+||++|||++|+.||......+ ......
T Consensus 165 l~Dfg~~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~- 238 (331)
T 4aaa_A 165 LCDFGFARTLAAPGEV----YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIM- 238 (331)
T ss_dssp ECCCTTC----------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHH-
T ss_pred EEeCCCceeecCCccc----cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHH-
Confidence 9999999765432211 1234589999999998875 78999999999999999999999986432110 000000
Q ss_pred HHHhhh---hhhhhc--cccccC-cchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 899 TALLDH---VIDIVD--PILIND-VEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 899 ~~~~~~---~~~~~d--~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
...... ....+. +..... ..... ...........+++++.+++.+||+.||++|||++|+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 239 MCLGNLIPRHQELFNKNPVFAGVRLPEIK------EREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp HHHCSCCHHHHHHHHHCGGGTTCCCCCCS------SCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred HHhCCCChhhhhHhhhccccccccCcccc------ccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 000000 000000 000000 00000 0000001123567889999999999999999999999864
No 226
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=8.7e-39 Score=376.22 Aligned_cols=262 Identities=28% Similarity=0.475 Sum_probs=210.4
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
...++|++.+.||+|+||.||+|.+. .+..||||+++... ...+++.+|+++|++++||||+++++++.. +.
T Consensus 264 i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~------~~ 335 (535)
T 2h8h_A 264 IPRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EP 335 (535)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SS
T ss_pred cchhhhhhheecccCCCeEEEEEEEC-CCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee------cc
Confidence 34567889999999999999999996 56789999997543 335789999999999999999999998642 56
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++|+|.+++.... ...+++.+++.|+.||+.||+|||++ +||||||||+|||+++++.+|
T Consensus 336 ~~lv~e~~~~gsL~~~l~~~~---------~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~k 403 (535)
T 2h8h_A 336 IYIVTEYMSKGSLLDFLKGET---------GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCK 403 (535)
T ss_dssp CEEEECCCTTEEHHHHHSHHH---------HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEE
T ss_pred ceEeeehhcCCcHHHHHhhcC---------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEE
Confidence 899999999999999996421 13589999999999999999999998 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+++....... .......++..|+|||++.+..++.++|||||||++|||++ |+.||...... ...
T Consensus 404 l~DFG~a~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~-----~~~- 474 (535)
T 2h8h_A 404 VADFGLARLIEDNEY---TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-----EVL- 474 (535)
T ss_dssp ECCTTSTTTCCCHHH---HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH-----HHH-
T ss_pred EcccccceecCCCce---ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-----HHH-
Confidence 999999986543211 11123446789999999998899999999999999999999 99998642110 110
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHhh
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNALL 976 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 976 (988)
+.+.. ......+..++.++.++|.+||+.||++|||+++|++.|+++.....
T Consensus 475 ----~~i~~----------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~ 526 (535)
T 2h8h_A 475 ----DQVER----------------------GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 526 (535)
T ss_dssp ----HHHHT----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCS
T ss_pred ----HHHHc----------------------CCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccC
Confidence 00000 00111234678889999999999999999999999999998765433
No 227
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.9e-38 Score=351.03 Aligned_cols=279 Identities=24% Similarity=0.297 Sum_probs=194.0
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
...++|++.+.||+|+||+||+|++..+++.||||+++.... ...+.+.+|+.++++++||||+++++++. .+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 105 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH-----HN 105 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEE-----ET
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEe-----cC
Confidence 345789999999999999999999999999999999964432 22456789999999999999999999964 44
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee-----
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL----- 812 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----- 812 (988)
+..++||||++ |+|.+++.... .+++.+++.|+.||+.||+|||+. +|+||||||+||++
T Consensus 106 ~~~~lv~e~~~-~~L~~~~~~~~-----------~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~ 170 (329)
T 3gbz_A 106 HRLHLIFEYAE-NDLKKYMDKNP-----------DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDA 170 (329)
T ss_dssp TEEEEEEECCS-EEHHHHHHHCT-----------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC---
T ss_pred CEEEEEEecCC-CCHHHHHhhcC-----------CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCC
Confidence 78999999996 69999986543 589999999999999999999999 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCccccCCc
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL 891 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 891 (988)
+.++.+||+|||+++....... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||......+
T Consensus 171 ~~~~~~kl~Dfg~a~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~- 245 (329)
T 3gbz_A 171 SETPVLKIGDFGLARAFGIPIR----QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID- 245 (329)
T ss_dssp --CCEEEECCTTHHHHHC---------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-
T ss_pred CccceEEECcCCCccccCCccc----ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH-
Confidence 4556699999999986543221 11234589999999998874 48999999999999999999999986421110
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHH-HhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQR-LRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
....... ............ ......|....... ...........++.++.+++.+||+.||++|||++|+++
T Consensus 246 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 246 QLFKIFE-VLGLPDDTTWPG--VTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp HHHHHHH-HHCCCCTTTSTT--GGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHH-HhCCCchhhhhh--hhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 0000000 000000000000 00000000000000 000000011235678999999999999999999999975
No 228
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.2e-38 Score=350.95 Aligned_cols=276 Identities=23% Similarity=0.305 Sum_probs=197.4
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-----chhHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-----GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
..++|++.+.||+|+||.||+|++..+|+.||||+++.... ...+.+.+|++++++++||||+++++++.
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 82 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG----- 82 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEe-----
Confidence 45789999999999999999999988999999999864322 12357889999999999999999999954
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
..+..++||||++ ++|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 83 ~~~~~~lv~e~~~-~~l~~~~~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~ 148 (346)
T 1ua2_A 83 HKSNISLVFDFME-TDLEVIIKDNS----------LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDEN 148 (346)
T ss_dssp CTTCCEEEEECCS-EEHHHHHTTCC----------SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTT
T ss_pred eCCceEEEEEcCC-CCHHHHHHhcC----------cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCC
Confidence 4578899999996 58998887654 2578889999999999999999999 99999999999999999
Q ss_pred CcEEEeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 816 MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 816 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
+.+||+|||+++....... ......||+.|+|||++.+. .++.++|||||||++|||++|.+||.... ...
T Consensus 149 ~~~kl~Dfg~a~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~----~~~ 220 (346)
T 1ua2_A 149 GVLKLADFGLAKSFGSPNR----AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS----DLD 220 (346)
T ss_dssp CCEEECCCGGGSTTTSCCC----CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHH
T ss_pred CCEEEEecccceeccCCcc----cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCC----HHH
Confidence 9999999999986543221 12234689999999998764 58899999999999999999999986321 111
Q ss_pred HHHHH--HHhhh-hhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 895 NYART--ALLDH-VIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 895 ~~~~~--~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
..... ..... ...+.+..-..+...+.... ..........++.++.+++.+||+.||++|||++|+++.
T Consensus 221 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 221 QLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFP----GIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp HHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCC----CCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHcCCCChhhhhhhccCcccccccccC----CCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 11110 00000 00000000000000000000 000000113466789999999999999999999999864
No 229
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=6.3e-38 Score=340.65 Aligned_cols=247 Identities=19% Similarity=0.255 Sum_probs=198.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||+||+|++..+++.||+|+++.. .......+.+|+..+.++ +||||+++++++.. ++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~-----~~ 84 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE-----DD 84 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE-----TT
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec-----CC
Confidence 45799999999999999999999989999999999753 233456788999999999 99999999999643 47
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC---
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND--- 815 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~--- 815 (988)
..++||||+++++|.+++.... .....+++.+++.++.||+.||+|||++ +|+||||||+||+++.+
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~ 154 (289)
T 1x8b_A 85 HMLIQNEYCNGGSLADAISENY-------RIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIP 154 (289)
T ss_dssp EEEEEEECCTTCBHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC-----
T ss_pred eEEEEEEecCCCcHHHHHHhhc-------ccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCC
Confidence 8999999999999999986431 0113589999999999999999999999 99999999999999844
Q ss_pred ----------------CcEEEeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHh
Q 001974 816 ----------------MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVT 878 (988)
Q Consensus 816 ----------------~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~ellt 878 (988)
..+||+|||.+....... ...||+.|+|||++.+. .++.++|||||||++|||++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~ 226 (289)
T 1x8b_A 155 NAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ--------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAG 226 (289)
T ss_dssp ---------------CCCEEECCCTTCEETTCSC--------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccCCceEEEEcccccccccCCcc--------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhc
Confidence 479999999998654322 13489999999998875 66789999999999999999
Q ss_pred CCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCC
Q 001974 879 GKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDR 958 (988)
Q Consensus 879 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R 958 (988)
|.+|+... .. + ..+. .. .....+..++.++.+++.+||+.||++|
T Consensus 227 ~~~~~~~~----~~---~------~~~~---~~-------------------~~~~~~~~~~~~~~~li~~~l~~dp~~R 271 (289)
T 1x8b_A 227 AEPLPRNG----DQ---W------HEIR---QG-------------------RLPRIPQVLSQEFTELLKVMIHPDPERR 271 (289)
T ss_dssp CCCCCSSS----HH---H------HHHH---TT-------------------CCCCCSSCCCHHHHHHHHHHTCSSGGGS
T ss_pred CCCCCcch----hH---H------HHHH---cC-------------------CCCCCCcccCHHHHHHHHHHhCCCcccC
Confidence 99875421 00 0 0000 00 0011223567889999999999999999
Q ss_pred CCHHHHHH
Q 001974 959 MSITNVVH 966 (988)
Q Consensus 959 Ps~~evl~ 966 (988)
||++|+++
T Consensus 272 ps~~~ll~ 279 (289)
T 1x8b_A 272 PSAMALVK 279 (289)
T ss_dssp CCHHHHHT
T ss_pred CCHHHHhh
Confidence 99999975
No 230
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-37 Score=349.59 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=116.4
Q ss_pred cCCCCCCCCCce-eeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECC
Q 001974 10 LNSWNDSGHFCE-WKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLS 88 (988)
Q Consensus 10 ~~~w~~~~~~c~-~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 88 (988)
+++|..+.+||. |.++.|.....++ ............-..++++++|++++|.++...+..|..+++|++|+|+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 688998877774 6666676443333 1211111122223346788999999999986665667888999999999
Q ss_pred CCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCC
Q 001974 89 DNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNI 168 (988)
Q Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 168 (988)
+|.+++..+..|+.+++|++|+|++|++++..|..|.++++|++|+|++|.++...+..|.++++|++|++++|++++..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99988777778888888888888888888777777778888888888888777444444667777777777777776666
Q ss_pred CccccCccccccccccccccc
Q 001974 169 PNSLGQLKELKSLGLGANNLS 189 (988)
Q Consensus 169 ~~~~~~l~~L~~L~L~~N~l~ 189 (988)
+..|.++++|++|+|++|+++
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCS
T ss_pred hhhccCCCCCCEEECCCCcCC
Confidence 666666666666666666665
No 231
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=9.7e-38 Score=375.74 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=204.5
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc---ccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ---RHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 736 (988)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+..|..++..+ +||+|+++++++ .+
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~-----~~ 413 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QT 413 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEEC-----BC
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEE-----Ee
Confidence 457899999999999999999999999999999999743 234456788999999988 799999999984 45
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
.+..++||||+++|+|.+++... ..+++..++.|+.||+.||+|||+. +||||||||+|||++.++
T Consensus 414 ~~~~~lV~E~~~gg~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g 479 (674)
T 3pfq_A 414 MDRLYFVMEYVNGGDLMYHIQQV-----------GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEG 479 (674)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSS
T ss_pred CCEEEEEEeCcCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCC
Confidence 58899999999999999998643 3689999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+|+....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... ....
T Consensus 480 ~ikL~DFGla~~~~~~~~----~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~-----~~~~ 550 (674)
T 3pfq_A 480 HIKIADFGMCKENIWDGV----TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED-----EDEL 550 (674)
T ss_dssp CEEECCCTTCEECCCTTC----CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHH
T ss_pred cEEEeecceeeccccCCc----ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC-----HHHH
Confidence 999999999985332221 1233569999999999999999999999999999999999999986321 1111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCH-----HHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSI-----TNVVH 966 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~-----~evl~ 966 (988)
... + . ......+..++.++.+|+.+||+.||++||++ +||++
T Consensus 551 ~~~-----i---~--------------------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 551 FQS-----I---M--------------------EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp HHH-----H---H--------------------SSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred HHH-----H---H--------------------hCCCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 111 0 0 01112233567889999999999999999997 56653
No 232
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=3.8e-38 Score=353.75 Aligned_cols=280 Identities=19% Similarity=0.282 Sum_probs=204.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.++|++.+.||+|+||.||+|++..+++.||+|+++... ....+.+.+|+.++++++||||+++++++.. ++..
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 106 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGEI 106 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-----TTEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-----CCEE
Confidence 457999999999999999999999899999999997543 3345678999999999999999999998653 4789
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++... ..+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||
T Consensus 107 ~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl 173 (360)
T 3eqc_A 107 SICMEHMDGGSLDQVLKKA-----------GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKL 173 (360)
T ss_dssp EEEECCCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEE
Confidence 9999999999999998643 2689999999999999999999983 18999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTA 900 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 900 (988)
+|||++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+ ........
T Consensus 174 ~Dfg~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~ 245 (360)
T 3eqc_A 174 CDFGVSGQLIDSM------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE--LELMFGCQ 245 (360)
T ss_dssp CCCCCCHHHHHHC----------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHH--HHHHHC--
T ss_pred EECCCCccccccc------ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHhccc
Confidence 9999997553321 123468999999999999999999999999999999999999987432111 00000000
Q ss_pred Hhhhh----------hhhhccccccCc--chhhhhhHHHHhhhhhc-cccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 901 LLDHV----------IDIVDPILINDV--EDWDATNKQRLRQAKIN-GKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 901 ~~~~~----------~~~~d~~l~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
..... ............ ................. ....++.++.+++.+||+.||++|||++|+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 325 (360)
T 3eqc_A 246 VEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH 325 (360)
T ss_dssp ----------------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred ccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence 00000 000000000000 00000000001111111 112367789999999999999999999999864
No 233
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=6.9e-38 Score=365.71 Aligned_cols=252 Identities=25% Similarity=0.319 Sum_probs=201.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc--ccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ--RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||+||+|++..+++.||||++... .......+.+|++++++++||||+++++++. ....
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~ 95 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSSS 95 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEE-----cCCE
Confidence 35699999999999999999999989999999998633 2234578899999999999999999999954 4588
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC---CCC
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD---NDM 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~---~~~ 816 (988)
.++||||+++|+|.+++... ..+++.++..++.||+.||+|||+. +|+||||||+||+++ .++
T Consensus 96 ~~lv~e~~~~~~L~~~~~~~-----------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 161 (486)
T 3mwu_A 96 FYIVGELYTGGELFDEIIKR-----------KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDC 161 (486)
T ss_dssp EEEEECCCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTC
T ss_pred EEEEEEcCCCCcHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCC
Confidence 99999999999999888543 3689999999999999999999999 999999999999995 456
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+++....... .....||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... ...
T Consensus 162 ~~kl~Dfg~a~~~~~~~~-----~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~ 230 (486)
T 3mwu_A 162 DIKIIDFGLSTCFQQNTK-----MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE-----YDI 230 (486)
T ss_dssp CEEECSCSCTTTBCCC---------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred CEEEEECCcCeECCCCCc-----cCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHH
Confidence 899999999986544322 123469999999999876 589999999999999999999999863211 111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.... ........... ...+++++.+++.+||+.||++|||++|+++.
T Consensus 231 ~~~i--------~~~~~~~~~~~----------------~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 231 LKRV--------ETGKYAFDLPQ----------------WRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp HHHH--------HHTCCCSCSGG----------------GGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred HHHH--------HhCCCCCCCcc----------------cCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 1110 00001111111 12467789999999999999999999999874
No 234
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=7.2e-38 Score=366.09 Aligned_cols=256 Identities=23% Similarity=0.320 Sum_probs=200.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||+||+|++..+++.||+|+++... ......+.+|+.+++.++||||+++++++. .+..
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~ 110 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFE-----DKRN 110 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCCE
Confidence 346999999999999999999999999999999997443 334578899999999999999999999964 4578
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC---C
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND---M 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~---~ 816 (988)
.++||||+++|+|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.. +
T Consensus 111 ~~lv~e~~~~g~L~~~~~~~-----------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 176 (494)
T 3lij_A 111 YYLVMECYKGGELFDEIIHR-----------MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDA 176 (494)
T ss_dssp EEEEEECCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTC
T ss_pred EEEEEecCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCC
Confidence 99999999999999888543 3689999999999999999999999 99999999999999764 4
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+++....... .....||+.|+|||++. ..++.++||||+||++|+|++|+.||..... ...
T Consensus 177 ~~kl~DfG~a~~~~~~~~-----~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~ 245 (494)
T 3lij_A 177 LIKIVDFGLSAVFENQKK-----MKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD-----QEI 245 (494)
T ss_dssp CEEECCCTTCEECBTTBC-----BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred cEEEEECCCCeECCCCcc-----ccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH-----HHH
Confidence 599999999987654322 12346999999999976 4689999999999999999999999864211 111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH--HHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE--LQSV 971 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~--L~~i 971 (988)
..... ..........| ..+++++.+++.+||+.||++|||++|+++. +.+.
T Consensus 246 ~~~i~--------~~~~~~~~~~~----------------~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~ 298 (494)
T 3lij_A 246 LRKVE--------KGKYTFDSPEW----------------KNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM 298 (494)
T ss_dssp HHHHH--------HTCCCCCSGGG----------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred HHHHH--------hCCCCCCchhc----------------ccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence 11100 00011111111 2467789999999999999999999999864 4444
No 235
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-38 Score=352.41 Aligned_cols=255 Identities=21% Similarity=0.290 Sum_probs=200.8
Q ss_pred hCCCCCCceeccccceeEEEEEEC---CCCeEEEEEEeeccc----cchhHHHHHHHHHHHhc-CCCCceEEEeeccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFD---QDGTIVAIKVFNLQR----HGASKSFLAECKALKNI-RHRNLVKVITSCSSID 733 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 733 (988)
.++|++.+.||+|+||.||+|++. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++.
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~--- 129 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ--- 129 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE---
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe---
Confidence 357999999999999999999984 478999999986432 23345677899999999 6999999999854
Q ss_pred ccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC
Q 001974 734 FQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD 813 (988)
Q Consensus 734 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 813 (988)
.++..++||||+++++|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++
T Consensus 130 --~~~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~ 193 (355)
T 1vzo_A 130 --TETKLHLILDYINGGELFTHLSQR-----------ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLD 193 (355)
T ss_dssp --ETTEEEEEECCCCSCBHHHHHHHH-----------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEC
T ss_pred --eCceEEEEeecCCCCCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEC
Confidence 347889999999999999998643 3689999999999999999999998 999999999999999
Q ss_pred CCCcEEEeeecccccccccccccceeccccccccccccCcccCC--CCCCCccchHHHHHHHHHHHhCCCCCCccccCCc
Q 001974 814 NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG--SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDL 891 (988)
Q Consensus 814 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 891 (988)
.++.+||+|||+++........ ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......
T Consensus 194 ~~~~~kl~DfG~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~- 269 (355)
T 1vzo_A 194 SNGHVVLTDFGLSKEFVADETE---RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN- 269 (355)
T ss_dssp TTSCEEESCSSEEEECCGGGGG---GGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-
T ss_pred CCCcEEEeeCCCCeecccCCCC---cccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc-
Confidence 9999999999999865432211 1223469999999999886 357899999999999999999999987432211
Q ss_pred chHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-----CHHHHHH
Q 001974 892 NLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-----SITNVVH 966 (988)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 966 (988)
......... .......+..++..+.+++.+||+.||++|| +++|+++
T Consensus 270 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 270 SQAEISRRI----------------------------LKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp CHHHHHHHH----------------------------HHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred hHHHHHHHH----------------------------hccCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 111111110 0011122335677899999999999999999 9999987
Q ss_pred H
Q 001974 967 E 967 (988)
Q Consensus 967 ~ 967 (988)
.
T Consensus 322 h 322 (355)
T 1vzo_A 322 H 322 (355)
T ss_dssp S
T ss_pred C
Confidence 5
No 236
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=6.8e-38 Score=354.10 Aligned_cols=251 Identities=24% Similarity=0.350 Sum_probs=193.9
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcC--CCCceEEEeecccccccCCC
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIR--HRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~~~ 738 (988)
++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.++++++ ||||+++++++.. ++
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~-----~~ 129 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-----DQ 129 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SS
T ss_pred CceEEEEEEccCCCeEEEEEEcC-CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-----CC
Confidence 45999999999999999999986 58999999997543 234467899999999996 5999999998643 47
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++|||+ .+++|.+++.... .+++.+++.++.||+.||+|||+. +|+||||||+|||++ ++.+
T Consensus 130 ~~~lv~E~-~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~ 193 (390)
T 2zmd_A 130 YIYMVMEC-GNIDLNSWLKKKK-----------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGML 193 (390)
T ss_dssp EEEEEEEC-CSEEHHHHHHHCS-----------SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCE
T ss_pred EEEEEEec-CCCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeE
Confidence 79999995 5899999987543 578889999999999999999998 999999999999996 5899
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCC-----------CCCCCccchHHHHHHHHHHHhCCCCCCccc
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-----------SEVSTNGDIYSYGILLLEMVTGKKPTDVMF 887 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwslG~vl~elltg~~p~~~~~ 887 (988)
||+|||+++........ .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 194 kl~DFG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~ 271 (390)
T 2zmd_A 194 KLIDFGIANQMQPDTTS--VVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII 271 (390)
T ss_dssp EECCCSSSCCC-----------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred EEEecCccccccCCCcc--ccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh
Confidence 99999999865432211 11223569999999999865 368899999999999999999999986421
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 888 EGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.. ... +..++++.... ..+...+.++.+++.+||+.||++|||++|+++.
T Consensus 272 ~~----~~~--------~~~~~~~~~~~------------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 272 NQ----ISK--------LHAIIDPNHEI------------------EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp CH----HHH--------HHHHHCTTSCC------------------CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HH----HHH--------HHHHhCccccC------------------CCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 11 000 11111111111 1122345678999999999999999999999864
No 237
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=342.13 Aligned_cols=252 Identities=26% Similarity=0.338 Sum_probs=199.6
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++|++.+.||+|+||.||+|.+..+|+.||+|++.... ..+.+.+|+.++++++||||+++++++.. ++..
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 99 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTDL 99 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCEE
Confidence 4578999999999999999999999899999999997543 35788999999999999999999999643 4788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHV 820 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL 820 (988)
++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 100 ~lv~e~~~~~~L~~~~~~~~----------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 166 (314)
T 3com_A 100 WIVMEYCGAGSVSDIIRLRN----------KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKL 166 (314)
T ss_dssp EEEEECCTTEEHHHHHHHHT----------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEE
T ss_pred EEEeecCCCCCHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEE
Confidence 99999999999999985322 3689999999999999999999998 9999999999999999999999
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTA 900 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 900 (988)
+|||.+........ ......|++.|+|||++.+..++.++||||||+++|+|++|+.||...... .....
T Consensus 167 ~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~- 236 (314)
T 3com_A 167 ADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM-----RAIFM- 236 (314)
T ss_dssp CCCTTCEECBTTBS----CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHH-
T ss_pred eecccchhhhhhcc----ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH-----HHHHH-
Confidence 99999976543221 112345899999999999999999999999999999999999998632110 00000
Q ss_pred HhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 901 LLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 901 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+.....+ ....+..++..+.+++.+||+.||++|||+.|+++
T Consensus 237 ----~~~~~~~--------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 237 ----IPTNPPP--------------------TFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ----HHHSCCC--------------------CCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ----HhcCCCc--------------------ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0000000 00112245678999999999999999999999986
No 238
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=347.01 Aligned_cols=268 Identities=23% Similarity=0.302 Sum_probs=203.3
Q ss_pred cccCHHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeec
Q 001974 651 QKVSYESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSC 729 (988)
Q Consensus 651 ~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~ 729 (988)
..+.++++....++|++.+.||+|+||.||+|++..+++.||+|++.... ...+.+.+|+.+++++ +||||+++++++
T Consensus 12 ~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 90 (326)
T 2x7f_A 12 DEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAF 90 (326)
T ss_dssp ----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEE
T ss_pred hhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEE
Confidence 34445555567789999999999999999999998899999999997543 3457889999999999 899999999997
Q ss_pred ccccc-cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCC
Q 001974 730 SSIDF-QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPG 808 (988)
Q Consensus 730 ~~~~~-~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 808 (988)
..... ...+..++||||+++++|.+++..... ..+++..++.++.||+.||+|||+. +|+||||||+
T Consensus 91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~ 158 (326)
T 2x7f_A 91 IKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG---------NTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQ 158 (326)
T ss_dssp EECC--CCCCEEEEEEECCTTEEHHHHHHHSGG---------GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGG
T ss_pred eeccCccccceEEEEEEcCCCCcHHHHHHhccc---------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHH
Confidence 64311 114678999999999999999865321 3689999999999999999999999 9999999999
Q ss_pred CeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccC-----CCCCCCccchHHHHHHHHHHHhCCCCC
Q 001974 809 NVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL-----GSEVSTNGDIYSYGILLLEMVTGKKPT 883 (988)
Q Consensus 809 NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwslG~vl~elltg~~p~ 883 (988)
||+++.++.+||+|||++........ ......|++.|+|||++. +..++.++|||||||++|||++|+.||
T Consensus 159 NIl~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~ 234 (326)
T 2x7f_A 159 NVLLTENAEVKLVDFGVSAQLDRTVG----RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPL 234 (326)
T ss_dssp GEEECTTCCEEECCCTTTC-----------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTT
T ss_pred HEEEcCCCCEEEeeCcCceecCcCcc----ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999986543221 112345899999999987 567899999999999999999999998
Q ss_pred CccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHH
Q 001974 884 DVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITN 963 (988)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e 963 (988)
...... ..... +.....+ ......++..+.+++.+||+.||++|||++|
T Consensus 235 ~~~~~~-----~~~~~-----~~~~~~~---------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 283 (326)
T 2x7f_A 235 CDMHPM-----RALFL-----IPRNPAP---------------------RLKSKKWSKKFQSFIESCLVKNHSQRPATEQ 283 (326)
T ss_dssp TTSCHH-----HHHHH-----HHHSCCC---------------------CCSCSCSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred CCCcHH-----HHHHH-----hhcCccc---------------------cCCccccCHHHHHHHHHHhccChhhCCCHHH
Confidence 632110 00000 0000000 0012346778999999999999999999999
Q ss_pred HHH
Q 001974 964 VVH 966 (988)
Q Consensus 964 vl~ 966 (988)
+++
T Consensus 284 ll~ 286 (326)
T 2x7f_A 284 LMK 286 (326)
T ss_dssp HHT
T ss_pred Hhh
Confidence 986
No 239
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=4.3e-38 Score=367.69 Aligned_cols=252 Identities=25% Similarity=0.342 Sum_probs=204.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc---cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR---HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.++++++||||+++++++. ..+
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 99 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFE-----DKG 99 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 356999999999999999999999999999999996432 334578999999999999999999999954 458
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee---CCC
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL---DND 815 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll---~~~ 815 (988)
..++||||+++|+|.+++.... .+++.+++.++.||+.||+|||++ +|+||||||+||++ +.+
T Consensus 100 ~~~lv~e~~~~~~L~~~~~~~~-----------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~ 165 (484)
T 3nyv_A 100 YFYLVGEVYTGGELFDEIISRK-----------RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKD 165 (484)
T ss_dssp EEEEEECCCCSCBHHHHHHTCS-----------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTT
T ss_pred EEEEEEecCCCCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCC
Confidence 8999999999999999986543 689999999999999999999999 99999999999999 567
Q ss_pred CcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 816 MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 816 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
+.+||+|||+++........ ....||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... ..
T Consensus 166 ~~~kl~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~ 234 (484)
T 3nyv_A 166 ANIRIIDFGLSTHFEASKKM-----KDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE-----YD 234 (484)
T ss_dssp CCEEECCTTHHHHBCCCCSH-----HHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HH
T ss_pred CcEEEEeeeeeEEccccccc-----ccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH-----HH
Confidence 89999999999876543322 22459999999999876 689999999999999999999999864211 11
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
..... .........+. ...+++++.+++.+||+.||++|||++|+++.
T Consensus 235 ~~~~i--------~~~~~~~~~~~----------------~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 235 ILKKV--------EKGKYTFELPQ----------------WKKVSESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp HHHHH--------HHCCCCCCSGG----------------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHH--------HcCCCCCCCcc----------------cccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 11110 00000001111 12467789999999999999999999999863
No 240
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=5.8e-38 Score=352.66 Aligned_cols=280 Identities=22% Similarity=0.206 Sum_probs=202.6
Q ss_pred HHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc-----------hhHHHHHHHHHHHhcCCCCce
Q 001974 655 YESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG-----------ASKSFLAECKALKNIRHRNLV 723 (988)
Q Consensus 655 ~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv 723 (988)
..++....++|++.+.||+|+||.||+|.+. +|+.||||++...... ..+.+.+|++++++++||||+
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECT-TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECC-CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 4567778899999999999999999999986 5999999998533221 126789999999999999999
Q ss_pred EEEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEec
Q 001974 724 KVITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHC 803 (988)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~ 803 (988)
++++++...........++||||++ |+|.+++.... ..+++..++.++.||+.||+|||+. +|+||
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~ 158 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR----------IVISPQHIQYFMYHILLGLHVLHEA---GVVHR 158 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT----------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc----------cCCCHHHHHHHHHHHHHHHHHHHHC---cCEec
Confidence 9999976543344567899999996 78888886543 3689999999999999999999999 99999
Q ss_pred cCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCC
Q 001974 804 DLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKP 882 (988)
Q Consensus 804 Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p 882 (988)
||||+||+++.++.+||+|||+++....... .....||+.|+|||++.+ ..++.++||||+||++|+|++|+.|
T Consensus 159 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p 233 (362)
T 3pg1_A 159 DLHPGNILLADNNDITICDFNLAREDTADAN-----KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKAL 233 (362)
T ss_dssp CCCGGGEEECTTCCEEECCTTC--------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCChHHEEEcCCCCEEEEecCcccccccccc-----cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCC
Confidence 9999999999999999999999975443222 122458999999999877 6789999999999999999999999
Q ss_pred CCccccCCcchHHHHHHHHhhh------------hhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcc
Q 001974 883 TDVMFEGDLNLHNYARTALLDH------------VIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVAC 950 (988)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c 950 (988)
|...... ............. ..+.+......... ..........++.+.+++.+|
T Consensus 234 f~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~li~~~ 300 (362)
T 3pg1_A 234 FRGSTFY--NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPA-----------RAWTAVVPTADPVALDLIAKM 300 (362)
T ss_dssp CCCSSHH--HHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCC-----------CCHHHHSTTSCHHHHHHHHHH
T ss_pred CCCCCHH--HHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCCh-----------hhHHhhCCCCCHHHHHHHHHH
Confidence 8742111 0001000000000 00000000000000 000111234567899999999
Q ss_pred cCcCCCCCCCHHHHHHH
Q 001974 951 SVESPQDRMSITNVVHE 967 (988)
Q Consensus 951 l~~dP~~RPs~~evl~~ 967 (988)
|+.||++|||++|+++.
T Consensus 301 L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 301 LEFNPQRRISTEQALRH 317 (362)
T ss_dssp TCSSGGGSCCHHHHHTS
T ss_pred hcCChhhCCCHHHHHcC
Confidence 99999999999999863
No 241
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=9.5e-38 Score=353.10 Aligned_cols=282 Identities=20% Similarity=0.240 Sum_probs=201.5
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccc----
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDF---- 734 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---- 734 (988)
....++|++.+.||+|+||+||+|++..+|+.||+|++..... ...+|+++++.++||||+++++++.....
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 3456789999999999999999999999999999999864322 23479999999999999999998754311
Q ss_pred -----------------------------cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHH
Q 001974 735 -----------------------------QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDV 785 (988)
Q Consensus 735 -----------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i 785 (988)
......++||||++ |+|.+.+.... .....+++..++.++.||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~-------~~~~~l~~~~~~~i~~qi 150 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFI-------RSGRSIPMNLISIYIYQL 150 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHH-------HTTCCCCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHH-------hcCCCCCHHHHHHHHHHH
Confidence 23455889999996 68777664211 011368999999999999
Q ss_pred HHHHHHHHcCCCCCeEeccCCCCCeeeC-CCCcEEEeeecccccccccccccceeccccccccccccCcccCCC-CCCCc
Q 001974 786 ASAIDYLHHHCQEPVLHCDLKPGNVLLD-NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTN 863 (988)
Q Consensus 786 ~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~ 863 (988)
+.||+|||+. +|+||||||+||+++ .++.+||+|||+|+........ ....||+.|+|||++.+. .++.+
T Consensus 151 ~~aL~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~ 222 (383)
T 3eb0_A 151 FRAVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS-----VAYICSRFYRAPELMLGATEYTPS 222 (383)
T ss_dssp HHHHHHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCC-----CCCCCCSSCCCHHHHTTCSSCCTH
T ss_pred HHHHHHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCC-----cCcccCCCccCHHHhcCCCCCCcc
Confidence 9999999998 999999999999997 6889999999999865443322 234589999999998775 48999
Q ss_pred cchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhhhhh-h--hcccccc------CcchhhhhhHHHHhhhhhc
Q 001974 864 GDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDHVID-I--VDPILIN------DVEDWDATNKQRLRQAKIN 934 (988)
Q Consensus 864 sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~--~d~~l~~------~~~~~~~~~~~~~~~~~~~ 934 (988)
+||||+||++|||++|+.||......+ .+..... .......+ + .++.... ....|. ..
T Consensus 223 ~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~-~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 289 (383)
T 3eb0_A 223 IDLWSIGCVFGELILGKPLFSGETSID-QLVRIIQ-IMGTPTKEQMIRMNPHYTEVRFPTLKAKDWR-----------KI 289 (383)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHH-HHCCCCHHHHHHHCTTC--CCCCCCCCCCHH-----------HH
T ss_pred hhhhhHHHHHHHHHhCCCCCCCCChHH-HHHHHHH-HhCCCCHHHHHHhCcccccccCCccCcccHH-----------hh
Confidence 999999999999999999987421110 0111110 00000000 0 0000000 001110 11
Q ss_pred cccchhHHHHHHhhcccCcCCCCCCCHHHHHHH--HHHHHH
Q 001974 935 GKIECPISMVRIGVACSVESPQDRMSITNVVHE--LQSVKN 973 (988)
Q Consensus 935 ~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~--L~~i~~ 973 (988)
.+..++.++.+++.+||+.||++|||+.|+++. +++++.
T Consensus 290 ~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 290 LPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp SCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence 233467889999999999999999999999853 555544
No 242
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=337.86 Aligned_cols=255 Identities=19% Similarity=0.326 Sum_probs=200.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc----cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR----HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
.++|++.+.||+|+||.||+|.+..+++.||+|+++... ....+.+.+|++++++++||||+++++++.. ...
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 80 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EEK 80 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C--
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CCC
Confidence 468999999999999999999999899999999996432 2345779999999999999999999998642 234
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
...++||||++++ +.+++..... ..+++..++.++.||+.||+|||++ +|+||||||+||+++.++.
T Consensus 81 ~~~~lv~e~~~~~-l~~~~~~~~~---------~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~ 147 (305)
T 2wtk_C 81 QKMYMVMEYCVCG-MQEMLDSVPE---------KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGT 147 (305)
T ss_dssp -CEEEEEECCSEE-HHHHHHHSTT---------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred CeEEEEehhccCC-HHHHHHhCcc---------cccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCc
Confidence 6789999999765 6666654321 3689999999999999999999999 9999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccCCCC--CCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSE--VSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
+||+|||.+.......... ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||... ....
T Consensus 148 ~kl~dfg~~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~ 220 (305)
T 2wtk_C 148 LKISALGVAEALHPFAADD--TCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD-----NIYK 220 (305)
T ss_dssp EEECCCTTCEECCTTCSSC--EECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHH
T ss_pred EEeeccccccccCcccccc--ccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc-----hHHH
Confidence 9999999998654322111 122345899999999987644 477999999999999999999998632 1111
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.... + .......+..++..+.+++.+||+.||++|||++|+++.
T Consensus 221 ~~~~-----i-----------------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 221 LFEN-----I-----------------------GKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp HHHH-----H-----------------------HHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred HHHH-----H-----------------------hcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1100 0 011112233577889999999999999999999999874
No 243
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=9.8e-38 Score=344.58 Aligned_cols=252 Identities=22% Similarity=0.268 Sum_probs=197.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--------chhHHHHHHHHHHHhcCCCCceEEEeeccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--------GASKSFLAECKALKNIRHRNLVKVITSCSSID 733 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 733 (988)
.++|++.+.||+|+||.||+|++..+++.||||++..... .....+.+|++++++++||||+++++++..
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-- 86 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-- 86 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES--
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC--
Confidence 4579999999999999999999998999999999864321 122458899999999999999999998642
Q ss_pred ccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC
Q 001974 734 FQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD 813 (988)
Q Consensus 734 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 813 (988)
+..++||||+++++|.+++.... .+++.+++.++.||+.||+|||++ +|+||||||+||+++
T Consensus 87 ----~~~~lv~e~~~~~~L~~~~~~~~-----------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~ 148 (322)
T 2ycf_A 87 ----EDYYIVLELMEGGELFDKVVGNK-----------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLS 148 (322)
T ss_dssp ----SSEEEEEECCTTEETHHHHSTTC-----------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEES
T ss_pred ----CceEEEEecCCCCcHHHHHhccC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEe
Confidence 34899999999999999987543 689999999999999999999998 999999999999998
Q ss_pred CCCc---EEEeeecccccccccccccceeccccccccccccCcccC---CCCCCCccchHHHHHHHHHHHhCCCCCCccc
Q 001974 814 NDMI---AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL---GSEVSTNGDIYSYGILLLEMVTGKKPTDVMF 887 (988)
Q Consensus 814 ~~~~---~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~elltg~~p~~~~~ 887 (988)
.++. +||+|||+++....... .....||+.|+|||++. ...++.++|||||||++|||++|+.||....
T Consensus 149 ~~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 223 (322)
T 2ycf_A 149 SQEEDCLIKITDFGHSKILGETSL-----MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR 223 (322)
T ss_dssp SSSSSCCEEECCCTTCEECCCCHH-----HHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTT
T ss_pred cCCCCCeEEEccCccceecccccc-----cccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence 7664 99999999986543221 11245899999999863 5678999999999999999999999987432
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 888 EGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
... ........ . ...... .....++.++.+++.+||+.||++|||++|+++
T Consensus 224 ~~~-~~~~~~~~----~-------~~~~~~----------------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 224 TQV-SLKDQITS----G-------KYNFIP----------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CSS-CHHHHHHH----T-------CCCCCH----------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred hHH-HHHHHHHh----C-------ccccCc----------------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 221 11111100 0 000000 001246778999999999999999999999984
No 244
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1.3e-37 Score=339.75 Aligned_cols=253 Identities=22% Similarity=0.300 Sum_probs=202.5
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---------chhHHHHHHHHHHHhcC-CCCceEEEeecc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---------GASKSFLAECKALKNIR-HRNLVKVITSCS 730 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~niv~~~~~~~ 730 (988)
..++|++.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 35789999999999999999999999999999999975431 22356889999999995 999999999954
Q ss_pred cccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCe
Q 001974 731 SIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNV 810 (988)
Q Consensus 731 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 810 (988)
.++..++||||+++++|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||
T Consensus 95 -----~~~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Ni 155 (298)
T 1phk_A 95 -----TNTFFFLVFDLMKKGELFDYLTEK-----------VTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENI 155 (298)
T ss_dssp -----CSSEEEEEEECCTTCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred -----cCCeEEEEEeccCCCcHHHHHhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceE
Confidence 457899999999999999998643 3689999999999999999999999 999999999999
Q ss_pred eeCCCCcEEEeeecccccccccccccceeccccccccccccCcccC------CCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001974 811 LLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL------GSEVSTNGDIYSYGILLLEMVTGKKPTD 884 (988)
Q Consensus 811 ll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDvwslG~vl~elltg~~p~~ 884 (988)
+++.++.+||+|||.+......... ....|++.|+|||++. ...++.++||||||+++|||++|+.||.
T Consensus 156 l~~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~ 230 (298)
T 1phk_A 156 LLDDDMNIKLTDFGFSCQLDPGEKL-----REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW 230 (298)
T ss_dssp EECTTCCEEECCCTTCEECCTTCCB-----CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEcCCCcEEEecccchhhcCCCccc-----ccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCc
Confidence 9999999999999999865443221 2245899999999874 4568899999999999999999999986
Q ss_pred ccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHH
Q 001974 885 VMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNV 964 (988)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ev 964 (988)
.... ....... .. ....... .....++.++.+++.+||+.||++|||++|+
T Consensus 231 ~~~~-----~~~~~~~-~~-------~~~~~~~----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 281 (298)
T 1phk_A 231 HRKQ-----MLMLRMI-MS-------GNYQFGS----------------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEA 281 (298)
T ss_dssp CSSH-----HHHHHHH-HH-------TCCCCCT----------------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CccH-----HHHHHHH-hc-------CCcccCc----------------ccccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 3211 1111100 00 0000000 0112467789999999999999999999999
Q ss_pred HH
Q 001974 965 VH 966 (988)
Q Consensus 965 l~ 966 (988)
++
T Consensus 282 l~ 283 (298)
T 1phk_A 282 LA 283 (298)
T ss_dssp TT
T ss_pred Hh
Confidence 75
No 245
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=6.8e-38 Score=350.95 Aligned_cols=282 Identities=23% Similarity=0.239 Sum_probs=205.4
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
..++|++.+.||+|+||.||+|++..+|+.||||+++.... .....+.+|++++++++||||+++++++....+.....
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 35789999999999999999999998999999999964332 33467889999999999999999999987655566688
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||++ ++|.+++.. +.+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 89 ~~lv~e~~~-~~L~~~~~~------------~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~k 152 (353)
T 2b9h_A 89 VYIIQELMQ-TDLHRVIST------------QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLK 152 (353)
T ss_dssp EEEEECCCS-EEHHHHHHH------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEE
T ss_pred EEEEEeccC-ccHHHHHhh------------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEE
Confidence 999999995 799988853 2589999999999999999999999 999999999999999999999
Q ss_pred Eeeecccccccccccccc------eeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcc
Q 001974 820 VGDFGLARVRQEVSNLTQ------SCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLN 892 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 892 (988)
|+|||+++.......... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .
T Consensus 153 l~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~ 230 (353)
T 2b9h_A 153 VCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYR--H 230 (353)
T ss_dssp ECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH--H
T ss_pred EEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcH--H
Confidence 999999986653321111 11223468999999998654 77899999999999999999999998742110 0
Q ss_pred hHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhh-------hhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH
Q 001974 893 LHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQ-------AKINGKIECPISMVRIGVACSVESPQDRMSITNVV 965 (988)
Q Consensus 893 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 965 (988)
.............. +.... .... ....+.... ........+++++.+++.+||+.||++|||++|++
T Consensus 231 ~~~~~~~~~~~~~~---~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 304 (353)
T 2b9h_A 231 QLLLIFGIIGTPHS---DNDLR-CIES--PRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEAL 304 (353)
T ss_dssp HHHHHHHHHCCCCS---TTTTT-TCCC--HHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHHHHHHhCCCch---hcccc-cccc--chhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHh
Confidence 00000000000000 00000 0000 000000000 00011235778899999999999999999999998
Q ss_pred H
Q 001974 966 H 966 (988)
Q Consensus 966 ~ 966 (988)
+
T Consensus 305 ~ 305 (353)
T 2b9h_A 305 E 305 (353)
T ss_dssp T
T ss_pred c
Confidence 6
No 246
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.2e-37 Score=365.20 Aligned_cols=252 Identities=23% Similarity=0.324 Sum_probs=200.3
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-------------chhHHHHHHHHHHHhcCCCCceEEEee
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-------------GASKSFLAECKALKNIRHRNLVKVITS 728 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~~~~~ 728 (988)
.++|++.++||+|+||+||+|++..+++.||+|++..... ...+.+.+|+.++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 5689999999999999999999999999999999864321 234678999999999999999999999
Q ss_pred cccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCC
Q 001974 729 CSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPG 808 (988)
Q Consensus 729 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 808 (988)
+. ++...++||||+++|+|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+
T Consensus 115 ~~-----~~~~~~lv~e~~~gg~L~~~l~~~-----------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~ 175 (504)
T 3q5i_A 115 FE-----DKKYFYLVTEFYEGGELFEQIINR-----------HKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPE 175 (504)
T ss_dssp EE-----CSSEEEEEEECCTTCBHHHHHHHH-----------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGG
T ss_pred EE-----cCCEEEEEEecCCCCcHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHH
Confidence 54 458899999999999999988543 3689999999999999999999999 9999999999
Q ss_pred CeeeCCCC---cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 809 NVLLDNDM---IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 809 NIll~~~~---~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
||+++.++ .+||+|||++......... ....||+.|+|||++.+ .++.++||||+||++|+|++|+.||..
T Consensus 176 Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~ 249 (504)
T 3q5i_A 176 NILLENKNSLLNIKIVDFGLSSFFSKDYKL-----RDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGG 249 (504)
T ss_dssp GEEESSTTCCSSEEECCCTTCEECCTTSCB-----CCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HEEEecCCCCccEEEEECCCCEEcCCCCcc-----ccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCC
Confidence 99998776 6999999999876543221 23459999999999874 689999999999999999999999863
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHH
Q 001974 886 MFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVV 965 (988)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 965 (988)
... ....... ...........| ..+++++.+++.+||+.||++|||++|++
T Consensus 250 ~~~-----~~~~~~i--------~~~~~~~~~~~~----------------~~~s~~~~~li~~~L~~dp~~R~t~~e~l 300 (504)
T 3q5i_A 250 QND-----QDIIKKV--------EKGKYYFDFNDW----------------KNISDEAKELIKLMLTYDYNKRCTAEEAL 300 (504)
T ss_dssp SSH-----HHHHHHH--------HHCCCCCCHHHH----------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCH-----HHHHHHH--------HcCCCCCCcccc----------------CCCCHHHHHHHHHHcCCChhHCCCHHHHh
Confidence 211 1111110 000010011111 24677899999999999999999999998
Q ss_pred HH
Q 001974 966 HE 967 (988)
Q Consensus 966 ~~ 967 (988)
+.
T Consensus 301 ~h 302 (504)
T 3q5i_A 301 NS 302 (504)
T ss_dssp TS
T ss_pred cC
Confidence 53
No 247
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=342.25 Aligned_cols=283 Identities=22% Similarity=0.255 Sum_probs=198.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeeccccc--------
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSID-------- 733 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-------- 733 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|++++++++||||+++++++....
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 467999999999999999999999889999999998666666678999999999999999999999864321
Q ss_pred -ccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 734 -FQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 734 -~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
+......++||||++ |+|.+++... ++++..++.++.|++.||+|||+. +|+||||||+||++
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~------------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~ 153 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG------------PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFI 153 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC------------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC------------CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEE
Confidence 234577899999996 7999998642 578899999999999999999999 99999999999999
Q ss_pred C-CCCcEEEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCC
Q 001974 813 D-NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGD 890 (988)
Q Consensus 813 ~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 890 (988)
+ +++.+||+|||+++......... .......+|..|+|||.+.+ ..++.++|||||||++|||++|+.||......
T Consensus 154 ~~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~- 231 (320)
T 2i6l_A 154 NTEDLVLKIGDFGLARIMDPHYSHK-GHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL- 231 (320)
T ss_dssp ETTTTEEEECCCTTCBCC---------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-
T ss_pred cCCCCeEEEccCccccccCCCcccc-cccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH-
Confidence 7 56799999999998654322111 11223457899999998765 67899999999999999999999998743211
Q ss_pred cchHHHHHHHHhhh-h-hhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 891 LNLHNYARTALLDH-V-IDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 891 ~~~~~~~~~~~~~~-~-~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.......... . ..............+..................++.++.+++.+||+.||++|||++|+++
T Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 232 ----EQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp ----HHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ----HHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 1111100000 0 0000000000000000000000000000112356788999999999999999999999986
No 248
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=1.1e-37 Score=350.93 Aligned_cols=277 Identities=22% Similarity=0.232 Sum_probs=198.5
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccc-cCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDF-QGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~ 738 (988)
.++|.+.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.+++.++||||+++++++..... ....
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 568999999999999999999999999999999997432 2334678899999999999999999999754311 1112
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||++ ++|.+++. ..+++.++..++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 121 ~~~lv~e~~~-~~l~~~~~-------------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~ 183 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG-------------MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCEL 183 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT-------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCE
T ss_pred eEEEEEcccc-ccHHHHhh-------------cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCE
Confidence 3499999995 78988874 2488999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... .....
T Consensus 184 kL~Dfg~a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~~~~ 251 (371)
T 4exu_A 184 KILDFGLARHADAE-------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD-----YLDQL 251 (371)
T ss_dssp EECSTTCC---------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHH
T ss_pred EEEecCcccccccC-------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC-----hHHHH
Confidence 99999999865432 123468999999999887 688999999999999999999999986421 11111
Q ss_pred HHHHh---hhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 898 RTALL---DHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 898 ~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
..... ....+............+..................+++++.+++.+||+.||++|||++|+++.
T Consensus 252 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 252 TQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp HHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 11100 00001000000000000000000000000001123467889999999999999999999999864
No 249
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=5.5e-38 Score=341.53 Aligned_cols=262 Identities=24% Similarity=0.377 Sum_probs=197.9
Q ss_pred hCCCCCCceeccccceeEEEEEECC-CC--eEEEEEEeecc---ccchhHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQ-DG--TIVAIKVFNLQ---RHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~-~~--~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 735 (988)
.++|++.+.||+|+||+||+|++.. ++ ..||+|+++.. .....+.+.+|++++++++||||+++++++..
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 92 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT---- 92 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence 4579999999999999999998743 33 36899998643 23445788999999999999999999999643
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
...++||||+++++|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 93 --~~~~~v~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~ 157 (291)
T 1u46_A 93 --PPMKMVTELAPLGSLLDRLRKHQ----------GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATR 157 (291)
T ss_dssp --SSCEEEEECCTTCBHHHHHHHHG----------GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEET
T ss_pred --CCceeeEecccCCCHHHHHHhcc----------CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCC
Confidence 34789999999999999986432 3689999999999999999999999 99999999999999999
Q ss_pred CcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchH
Q 001974 816 MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLH 894 (988)
Q Consensus 816 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 894 (988)
+.+||+|||++......... ........+|..|+|||++.+..++.++||||||+++|||++ |+.||..... .
T Consensus 158 ~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~ 231 (291)
T 1u46_A 158 DLVKIGDFGLMRALPQNDDH-YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-----S 231 (291)
T ss_dssp TEEEECCCTTCEECCC-CCE-EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----H
T ss_pred CCEEEccccccccccccccc-hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH-----H
Confidence 99999999999876543221 111223457889999999988889999999999999999999 9999863211 1
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
......... . .....+..++.++.+++.+||+.||++|||++++++.|+++...
T Consensus 232 ~~~~~~~~~--------~------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 232 QILHKIDKE--------G------------------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp HHHHHHHTS--------C------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred HHHHHHHcc--------C------------------CCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 111100000 0 00112235778899999999999999999999999999987543
No 250
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=348.01 Aligned_cols=260 Identities=15% Similarity=0.136 Sum_probs=204.5
Q ss_pred HhhCCCCCCceeccccceeEEEEE-----ECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC---CCCceEEEeeccc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGA-----FDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR---HRNLVKVITSCSS 731 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~-----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~ 731 (988)
...++|.+.+.||+|+||+||+|. ...+++.||+|+++.. ...++..|+++++.++ |+||+++++++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 345789999999999999999994 5668899999998643 3467788888888885 9999999999643
Q ss_pred ccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCee
Q 001974 732 IDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVL 811 (988)
Q Consensus 732 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIl 811 (988)
++..++||||+++|+|.+++...... ....+++.+++.|+.||+.||+|||+. +||||||||+|||
T Consensus 139 -----~~~~~lv~e~~~~g~L~~~l~~~~~~------~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIl 204 (365)
T 3e7e_A 139 -----QNGSVLVGELYSYGTLLNAINLYKNT------PEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFI 204 (365)
T ss_dssp -----SSCEEEEECCCCSCBHHHHHHHHHTS------TTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEE
T ss_pred -----CCCcEEEEeccCCCcHHHHHHHhhcc------cccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEE
Confidence 47889999999999999999642110 013689999999999999999999998 9999999999999
Q ss_pred eCC-----------CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCC
Q 001974 812 LDN-----------DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGK 880 (988)
Q Consensus 812 l~~-----------~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~ 880 (988)
++. ++.+||+|||+|+....... ........||+.|+|||++.+..++.++|||||||++|||+||+
T Consensus 205 l~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~ 282 (365)
T 3e7e_A 205 LGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPK--GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGT 282 (365)
T ss_dssp ECGGGTCC------CTTEEECCCTTCEEGGGSCT--TEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSS
T ss_pred ecccccCccccccccCCEEEeeCchhhhhhccCC--CceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCC
Confidence 998 89999999999976543221 12223456999999999999999999999999999999999999
Q ss_pred CCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCC-C
Q 001974 881 KPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDR-M 959 (988)
Q Consensus 881 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R-P 959 (988)
.||.....+... ....+ .....++.+.+++..|++.+|.+| |
T Consensus 283 ~pf~~~~~~~~~----------------~~~~~---------------------~~~~~~~~~~~~~~~~l~~~p~~r~~ 325 (365)
T 3e7e_A 283 YMKVKNEGGECK----------------PEGLF---------------------RRLPHLDMWNEFFHVMLNIPDCHHLP 325 (365)
T ss_dssp CCCEEEETTEEE----------------ECSCC---------------------TTCSSHHHHHHHHHHHHCCCCTTCCC
T ss_pred CccccCCCCcee----------------echhc---------------------cccCcHHHHHHHHHHHcCCCCCCcch
Confidence 998532221100 00000 001234568899999999999999 6
Q ss_pred CHHHHHHHHHHHHHHh
Q 001974 960 SITNVVHELQSVKNAL 975 (988)
Q Consensus 960 s~~evl~~L~~i~~~~ 975 (988)
+++++.+.|+++.++.
T Consensus 326 ~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 326 SLDLLRQKLKKVFQQH 341 (365)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888876653
No 251
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.4e-37 Score=339.71 Aligned_cols=272 Identities=26% Similarity=0.349 Sum_probs=200.9
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|++..+|+.||+|+++... ....+.+.+|+.++++++||||+++++++.. ++.
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 76 (299)
T 2r3i_A 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENK 76 (299)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTE
T ss_pred cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-----CCc
Confidence 367999999999999999999999899999999986433 2334678899999999999999999999643 478
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||++ ++|.+++..... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 77 ~~lv~e~~~-~~L~~~~~~~~~---------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~k 143 (299)
T 2r3i_A 77 LYLVFEFLH-QDLKKFMDASAL---------TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIK 143 (299)
T ss_dssp EEEEEECCS-EEHHHHHHHTTT---------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEE
T ss_pred eEEEEEccc-CCHHHHHHhhhc---------cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEE
Confidence 999999996 799999865432 3578899999999999999999999 999999999999999999999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCC-CCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSE-VSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||.+......... .....+|+.|+|||++.+.. ++.++|||||||++|||++|+.||..... ......
T Consensus 144 l~dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~----~~~~~~ 215 (299)
T 2r3i_A 144 LADFGLARAFGVPVRT----YTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE----IDQLFR 215 (299)
T ss_dssp ECSTTHHHHHCCCSBC----TTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHH
T ss_pred ECcchhhhhccCCccc----cCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccH----HHHHHH
Confidence 9999999865432211 12245899999999988765 78999999999999999999999864211 111111
Q ss_pred HHHh-hhhhhhhcc------ccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 899 TALL-DHVIDIVDP------ILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 899 ~~~~-~~~~~~~d~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.... ....+..-+ ........|.. .........++.++.+++.+||+.||++|||++|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 216 IFRTLGTPDEVVWPGVTSMPDYKPSFPKWAR-------QDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp HHHHHCCCCTTTSTTGGGSTTCCTTSCCCCC-------CCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHhCCCchhhhhHhhcCcccchhhhcccc-------hhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0000 000000000 00000000000 0000012246778999999999999999999999986
No 252
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.4e-37 Score=354.01 Aligned_cols=198 Identities=24% Similarity=0.357 Sum_probs=170.5
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc------CCCCceEEEeeccccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI------RHRNLVKVITSCSSIDFQ 735 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~~~~ 735 (988)
..+|++.+.||+|+||+||+|.+..+++.||||+++.. ....+.+.+|+++++.+ .|+||+++++++..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~---- 170 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF---- 170 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE----
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc----
Confidence 46799999999999999999999989999999999643 23346677888888887 56799999998643
Q ss_pred CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC
Q 001974 736 GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND 815 (988)
Q Consensus 736 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~ 815 (988)
....++||||+ +++|.+++..... ..+++..++.|+.||+.||+|||+. +||||||||+|||++.+
T Consensus 171 -~~~~~lv~e~~-~~~L~~~l~~~~~---------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~ 236 (429)
T 3kvw_A 171 -RNHICMTFELL-SMNLYELIKKNKF---------QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQ 236 (429)
T ss_dssp -TTEEEEEECCC-CCBHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESST
T ss_pred -CCeEEEEEecc-CCCHHHHHHhccC---------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccC
Confidence 47899999999 5799998865432 3589999999999999999999999 99999999999999998
Q ss_pred Cc--EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 816 MI--AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 816 ~~--~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
+. +||+|||+|+..... .....||+.|+|||++.+..++.++|||||||++|||++|++||..
T Consensus 237 ~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~ 301 (429)
T 3kvw_A 237 GRSGIKVIDFGSSCYEHQR-------VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301 (429)
T ss_dssp TSCCEEECCCTTCEETTCC-------CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCcceEEeecccceecCCc-------ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence 87 999999999754332 1224689999999999999999999999999999999999999864
No 253
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=3.3e-37 Score=341.34 Aligned_cols=276 Identities=25% Similarity=0.343 Sum_probs=205.3
Q ss_pred HhhCCCCCCceeccccceeEEEEEEC-CCCeEEEEEEeecccc--chhHHHHHHHHHHHhc---CCCCceEEEeeccccc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFD-QDGTIVAIKVFNLQRH--GASKSFLAECKALKNI---RHRNLVKVITSCSSID 733 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~~~~~~~~~~ 733 (988)
...++|++.+.||+|+||.||+|++. .+++.||+|+++.... .....+.+|+.+++.+ +||||+++++++....
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 34578999999999999999999994 6789999999864332 2234667788777766 8999999999976432
Q ss_pred ccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC
Q 001974 734 FQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD 813 (988)
Q Consensus 734 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 813 (988)
.......++||||++ |+|.+++..... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~---------~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~ 154 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVPE---------PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVT 154 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSCT---------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEC
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhccc---------CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEc
Confidence 334577899999996 799999865432 2589999999999999999999999 999999999999999
Q ss_pred CCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcch
Q 001974 814 NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNL 893 (988)
Q Consensus 814 ~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 893 (988)
.++.+||+|||.++....... .....||..|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 155 ~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---- 225 (326)
T 1blx_A 155 SSGQIKLADFGLARIYSFQMA-----LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV---- 225 (326)
T ss_dssp TTCCEEECSCCSCCCCCGGGG-----GCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH----
T ss_pred CCCCEEEecCcccccccCCCC-----ccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH----
Confidence 999999999999986543221 12345899999999999999999999999999999999999998743111
Q ss_pred HHHHHHHHhhhhhhhhccccccCcchhhhhhH-------HHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 894 HNYARTALLDHVIDIVDPILINDVEDWDATNK-------QRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 894 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
....... .. .. .....+|..... .............++..+.+++.+||+.||++|||++|+++
T Consensus 226 -~~~~~i~-~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 226 -DQLGKIL-DV----IG---LPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp -HHHHHHH-HH----HC---CCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -HHHHHHH-HH----cC---CCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 1111100 00 00 000001100000 00000111223457788999999999999999999999985
No 254
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=5.9e-38 Score=343.49 Aligned_cols=274 Identities=23% Similarity=0.296 Sum_probs=186.1
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCC
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
....++|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.++++++||||+++++++.. .
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 85 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVV-----K 85 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEES-----S
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEee-----c
Confidence 345678999999999999999999998899999999986433 2345678899999999999999999999643 4
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||+++++|.+++........ .....+++..++.++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~---~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~ 159 (303)
T 2vwi_A 86 DELWLVMKLLSGGSVLDIIKHIVAKGE---HKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGS 159 (303)
T ss_dssp SCEEEEEECCTTCBHHHHHHHHHHTTT---TTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCC
T ss_pred CCcEEEehhccCCchHHHHHHHhhccc---cccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCC
Confidence 778999999999999999863110000 0013589999999999999999999998 9999999999999999999
Q ss_pred EEEeeeccccccccccccc-ceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHH
Q 001974 818 AHVGDFGLARVRQEVSNLT-QSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 895 (988)
+||+|||.+.......... ........||+.|+|||++.+ ..++.++||||||+++|||++|+.||......+ .
T Consensus 160 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~ 235 (303)
T 2vwi_A 160 VQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK----V 235 (303)
T ss_dssp EEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG----H
T ss_pred EEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh----H
Confidence 9999999998654332111 111223468999999999865 568999999999999999999999987432211 0
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
......... +..... .........++.++.+++.+||+.||++|||++|+++
T Consensus 236 -~~~~~~~~~-----~~~~~~-------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 236 -LMLTLQNDP-----PSLETG-------------VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp -HHHHHTSSC-----CCTTC------------------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -HHHHhccCC-----Cccccc-------------cccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 000000000 000000 0001122356778999999999999999999999986
No 255
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=4.1e-38 Score=354.68 Aligned_cols=269 Identities=10% Similarity=0.022 Sum_probs=187.5
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---chhHHHHHHHHHHHhc--CCCCceEEEeecc------
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---GASKSFLAECKALKNI--RHRNLVKVITSCS------ 730 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~niv~~~~~~~------ 730 (988)
...|++.+.||+|+||+||+|++..+|+.||||+++.... ...+.+.+|+.+++.+ +||||++++..+.
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 3458899999999999999999998999999999986432 3345677886555555 6999988653321
Q ss_pred -cccc------c------CCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHH------HHHHHHHHHHHHH
Q 001974 731 -SIDF------Q------GNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQR------INIAIDVASAIDY 791 (988)
Q Consensus 731 -~~~~------~------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~------~~i~~~i~~~L~~ 791 (988)
.... . .....++||||++ |+|.+++.... ..+.+..+ ..++.||+.||+|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~----------~~~~~~~~~~~~vk~~i~~qi~~aL~~ 209 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD----------FVYVFRGDEGILALHILTAQLIRLAAN 209 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH----------HSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc----------cccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 1100 0 0134799999997 89999996532 23344445 6788999999999
Q ss_pred HHcCCCCCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCC--CCCCCccchHHH
Q 001974 792 LHHHCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG--SEVSTNGDIYSY 869 (988)
Q Consensus 792 LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwsl 869 (988)
||++ +||||||||+|||++.++.+||+|||+|+...... ....+|+.|+|||++.+ ..++.++|||||
T Consensus 210 LH~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSl 279 (371)
T 3q60_A 210 LQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG-------PASSVPVTYAPREFLNASTATFTHALNAWQL 279 (371)
T ss_dssp HHHT---TEEETTCSGGGEEECTTSCEEECCGGGEEETTCEE-------EGGGSCGGGCCHHHHTCSEEECCHHHHHHHH
T ss_pred HHHC---CCccCcCCHHHEEECCCCCEEEEecceeeecCCCc-------cCccCCcCCcChhhccCCCCCcCccccHHHH
Confidence 9999 99999999999999999999999999998654321 12347799999999987 679999999999
Q ss_pred HHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhc
Q 001974 870 GILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVA 949 (988)
Q Consensus 870 G~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 949 (988)
||++|||++|+.||......... ............ ..........+++.+.+++.+
T Consensus 280 G~il~elltg~~Pf~~~~~~~~~---------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~li~~ 335 (371)
T 3q60_A 280 GLSIYRVWCLFLPFGLVTPGIKG---------------SWKRPSLRVPGT---------DSLAFGSCTPLPDFVKTLIGR 335 (371)
T ss_dssp HHHHHHHHHSSCSTTBCCTTCTT---------------CCCBCCTTSCCC---------CSCCCTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCccccc---------------chhhhhhhhccc---------cccchhhccCCCHHHHHHHHH
Confidence 99999999999999754222100 000000000000 000011123678889999999
Q ss_pred ccCcCCCCCCCHHHHHH--HHHHHHHHh
Q 001974 950 CSVESPQDRMSITNVVH--ELQSVKNAL 975 (988)
Q Consensus 950 cl~~dP~~RPs~~evl~--~L~~i~~~~ 975 (988)
||+.||++|||++|+++ .++++....
T Consensus 336 ~L~~dP~~Rpt~~e~l~hp~f~~~~~~~ 363 (371)
T 3q60_A 336 FLNFDRRRRLLPLEAMETPEFLQLQNEI 363 (371)
T ss_dssp HTCSSTTTCCCHHHHTTSHHHHHHHHHH
T ss_pred HcCCChhhCCCHHHHhcCHHHHHHHHHH
Confidence 99999999999999985 355555443
No 256
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=4.3e-37 Score=350.57 Aligned_cols=281 Identities=20% Similarity=0.272 Sum_probs=204.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC--------CCCceEEEeeccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR--------HRNLVKVITSCSSID 733 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~~~~~~~~~~ 733 (988)
.++|++.+.||+|+||+||+|++..+++.||||+++.. ....+.+.+|++++++++ |+||+++++++...
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~- 113 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS- 113 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE-
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec-
Confidence 46799999999999999999999989999999999643 334567889999999985 78899999986532
Q ss_pred ccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC
Q 001974 734 FQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD 813 (988)
Q Consensus 734 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 813 (988)
...+...++||||+ ++++.+++..... +.+++..++.|+.||+.||+|||+++ +|+||||||+|||++
T Consensus 114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~~---------~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~ 181 (397)
T 1wak_A 114 GVNGTHICMVFEVL-GHHLLKWIIKSNY---------QGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLS 181 (397)
T ss_dssp ETTEEEEEEEECCC-CCBHHHHHHHTTT---------SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEEC
T ss_pred CCCCceEEEEEecc-CccHHHHHHhccc---------CCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEe
Confidence 12446789999999 6666666543321 36899999999999999999999852 899999999999999
Q ss_pred CCC-------------------------------------------------cEEEeeecccccccccccccceeccccc
Q 001974 814 NDM-------------------------------------------------IAHVGDFGLARVRQEVSNLTQSCSVGVR 844 (988)
Q Consensus 814 ~~~-------------------------------------------------~~kL~DfG~a~~~~~~~~~~~~~~~~~~ 844 (988)
.++ .+||+|||.++...... ....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~-------~~~~ 254 (397)
T 1wak_A 182 VNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHF-------TEDI 254 (397)
T ss_dssp CCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCS-------CSCC
T ss_pred ccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccC-------ccCC
Confidence 775 79999999998654321 2245
Q ss_pred cccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhh----hhhh----------hc
Q 001974 845 GTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDH----VIDI----------VD 910 (988)
Q Consensus 845 gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~d 910 (988)
||+.|+|||++.+..++.++|||||||++|||++|+.||......+..........+.+. .... +.
T Consensus 255 gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 334 (397)
T 1wak_A 255 QTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 334 (397)
T ss_dssp SCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBC
T ss_pred CCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccC
Confidence 899999999999999999999999999999999999999754332211111110111000 0000 00
Q ss_pred cc----cccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 911 PI----LINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 911 ~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.. .......|. ...............+.++.+|+.+||+.||++|||++|+++
T Consensus 335 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 335 KKGDLKHITKLKPWG---LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp TTSSBSSCCCCCCCC---HHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred CccccccccccCCcc---hhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00 000000000 001111112233456778999999999999999999999985
No 257
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-36 Score=364.38 Aligned_cols=183 Identities=15% Similarity=0.175 Sum_probs=118.5
Q ss_pred ccCCccccCCCCCCCCCce-eeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCC
Q 001974 3 AHDPQGILNSWNDSGHFCE-WKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFR 81 (988)
Q Consensus 3 ~~~~~~~~~~w~~~~~~c~-~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 81 (988)
.-+.+..+++|.++.+||. |.++.|...+.++ +....... .+..-..+++++.|++++|.++...+..|..+++
T Consensus 2 ~g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i---~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~ 76 (597)
T 3oja_B 2 GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHI---DMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76 (597)
T ss_dssp ---------CCCSEECCCCC--CCSEEECSCEE---CSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCC
T ss_pred CCcccccccCCCCCCcCcccCcCceeEecCcee---cccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCC
Confidence 3466778899998888874 3333343222222 11111111 1111224578888999999888766667788888
Q ss_pred CcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccc
Q 001974 82 LEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAA 161 (988)
Q Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (988)
|++|+|++|.|++..|..|+.+++|++|+|++|.|++..|..|.++++|++|+|++|.+++..+..|+++++|++|+|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 88888888888877777888888888888888888877777777787888888877777755555567777777777777
Q ss_pred cccCCCCCccccCcccccccccccccccC
Q 001974 162 NAFGGNIPNSLGQLKELKSLGLGANNLSG 190 (988)
Q Consensus 162 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 190 (988)
|.+++..|..|+++++|++|+|++|.+++
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 77766666666666666666666666653
No 258
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=3.6e-37 Score=346.04 Aligned_cols=291 Identities=22% Similarity=0.228 Sum_probs=193.7
Q ss_pred HHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccc-
Q 001974 656 ESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDF- 734 (988)
Q Consensus 656 ~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~- 734 (988)
+......++|++.+.||+|+||.||+|++..+|+.||||++.... .....+.+|++.++.++||||+++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 445567789999999999999999999999899999999986432 334567788888999999999999999765321
Q ss_pred -cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHH--cCCCCCeEeccCCCCCee
Q 001974 735 -QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLH--HHCQEPVLHCDLKPGNVL 811 (988)
Q Consensus 735 -~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--~~~~~~ivH~Dlkp~NIl 811 (988)
......++||||+++ ++.+.+..... ....+++..+..++.|++.||+||| +. +|+||||||+||+
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~-------~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIl 163 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYR-------RQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVL 163 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhh-------cccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEE
Confidence 112337899999965 44433321000 0136788999999999999999999 77 9999999999999
Q ss_pred eCC-CCcEEEeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCccccC
Q 001974 812 LDN-DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVMFEG 889 (988)
Q Consensus 812 l~~-~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~ 889 (988)
++. ++.+||+|||+++........ ....||+.|+|||++.+. .++.++|||||||++|||++|+.||......
T Consensus 164 l~~~~~~~kl~Dfg~a~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~ 238 (360)
T 3e3p_A 164 VNEADGTLKLCDFGSAKKLSPSEPN-----VAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA 238 (360)
T ss_dssp EETTTTEEEECCCTTCBCCCTTSCC-----CSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred EeCCCCcEEEeeCCCceecCCCCCc-----ccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH
Confidence 996 899999999999866543221 234589999999998765 4899999999999999999999998742111
Q ss_pred CcchHHHHHHHHhhh---hhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 890 DLNLHNYARTALLDH---VIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 890 ~~~~~~~~~~~~~~~---~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
..+..... ..... .....++..... ++...................+.++.+++.+||+.||++|||++|+++
T Consensus 239 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 239 -GQLHEIVR-VLGCPSREVLRKLNPSHTDV--DLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp -HHHHHHHH-HHCCCCHHHHHHHCTTCCCG--GGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred -HHHHHHHH-HcCCCCHHHHHhcccchhhc--cccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 01111111 10000 001111100000 000000000111111223346788999999999999999999999986
Q ss_pred H
Q 001974 967 E 967 (988)
Q Consensus 967 ~ 967 (988)
.
T Consensus 315 h 315 (360)
T 3e3p_A 315 H 315 (360)
T ss_dssp S
T ss_pred C
Confidence 3
No 259
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=9e-38 Score=339.65 Aligned_cols=256 Identities=20% Similarity=0.221 Sum_probs=186.2
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
..++|++.+.||+|+||+||+|++..+|+.||+|+++.... ...+.+..+...++.++||||+++++++. .++
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----~~~ 79 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REG 79 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----ccC
Confidence 35789999999999999999999998999999999974422 22233445555677889999999999964 347
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||++ |+|.+++..... ....+++..++.++.|++.||+|||++ .+|+||||||+||+++.++.+
T Consensus 80 ~~~lv~e~~~-~~l~~~l~~~~~-------~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~ 149 (290)
T 3fme_A 80 DVWICMELMD-TSLDKFYKQVID-------KGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQV 149 (290)
T ss_dssp SEEEEEECCS-EEHHHHHHHHHH-------TTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCE
T ss_pred CEEEEEehhc-cchHHHHHHHHh-------cCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCE
Confidence 8999999996 688777643110 113689999999999999999999984 289999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCccc----CCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYG----LGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
||+|||+++........ ....||+.|+|||++ .+..++.++||||+||++|||++|+.||...... .
T Consensus 150 kl~Dfg~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~- 220 (290)
T 3fme_A 150 KMCDFGISGYLVDDVAK-----DIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP---F- 220 (290)
T ss_dssp EBCCC--------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCH---H-
T ss_pred EEeecCCcccccccccc-----cccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCch---H-
Confidence 99999999865443221 123589999999996 5667899999999999999999999998632111 0
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
...... ....... .....++.++.+++.+||+.||++|||++|+++
T Consensus 221 ~~~~~~--------~~~~~~~------------------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 221 QQLKQV--------VEEPSPQ------------------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp HHHHHH--------HHSCCCC------------------CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHH--------hccCCCC------------------cccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 000000 0000000 011246778999999999999999999999987
No 260
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=4e-37 Score=343.94 Aligned_cols=267 Identities=17% Similarity=0.243 Sum_probs=202.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccch-----------------hHHHHHHHHHHHhcCCCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGA-----------------SKSFLAECKALKNIRHRNLVK 724 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~h~niv~ 724 (988)
.++|++.+.||+|+||.||+|++ +++.||+|++....... .+.+.+|+.++++++||||++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~ 107 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT 107 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence 46899999999999999999999 89999999996432211 178999999999999999999
Q ss_pred EEeecccccccCCCceEEEEeeccccchhhh------cCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHc-CCC
Q 001974 725 VITSCSSIDFQGNDFKALVYEFMTNGSLENW------LHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHH-HCQ 797 (988)
Q Consensus 725 ~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~ 797 (988)
+++++. .++..++||||+++++|.++ +..... ..+++..++.++.|++.||+|||+ .
T Consensus 108 ~~~~~~-----~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~---------~~~~~~~~~~i~~qi~~~l~~lH~~~-- 171 (348)
T 2pml_X 108 CEGIIT-----NYDEVYIIYEYMENDSILKFDEYFFVLDKNYT---------CFIPIQVIKCIIKSVLNSFSYIHNEK-- 171 (348)
T ss_dssp CSEEEE-----SSSEEEEEEECCTTCBSSEESSSEESSCSSSC---------CCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred EEEEEe-----eCCeEEEEEeccCCCcHHHHHHHhhhhhhccc---------cCCCHHHHHHHHHHHHHHHHHHhccC--
Confidence 999964 34789999999999999999 544211 368999999999999999999999 8
Q ss_pred CCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC-CCCC-ccchHHHHHHHHH
Q 001974 798 EPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVST-NGDIYSYGILLLE 875 (988)
Q Consensus 798 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~sDvwslG~vl~e 875 (988)
+|+||||||+||+++.++.+||+|||.+...... ......|+..|+|||++.+. .++. ++|||||||++||
T Consensus 172 -~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~ 244 (348)
T 2pml_X 172 -NICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYV 244 (348)
T ss_dssp -CEECCCCCGGGEEECTTSCEEECCCTTCEECBTT------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHH
T ss_pred -CEeecCCChHhEEEcCCCcEEEeccccccccccc------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999865432 12234589999999999887 6666 9999999999999
Q ss_pred HHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCC
Q 001974 876 MVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESP 955 (988)
Q Consensus 876 lltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP 955 (988)
|++|+.||...... ............ . .......+... ............++.++.+++.+||+.||
T Consensus 245 l~~g~~pf~~~~~~----~~~~~~i~~~~~-~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~li~~~L~~dP 311 (348)
T 2pml_X 245 MFYNVVPFSLKISL----VELFNNIRTKNI-E-----YPLDRNHFLYP---LTNKKSTCSNNFLSNEDIDFLKLFLRKNP 311 (348)
T ss_dssp HHHSSCSSCCSSCS----HHHHHHHTSCCC-C-----CCCSSSSSTTT---TCC--------CCCHHHHHHHHHHCCSSG
T ss_pred HHhCCCCCCCCCcH----HHHHHHHhccCc-C-----Cccchhhhhcc---ccccccccchhhcCHHHHHHHHHHccCCh
Confidence 99999998743221 111111111000 0 00000000000 00000011123577889999999999999
Q ss_pred CCCCCHHHHHH
Q 001974 956 QDRMSITNVVH 966 (988)
Q Consensus 956 ~~RPs~~evl~ 966 (988)
++|||++|+++
T Consensus 312 ~~Rps~~e~l~ 322 (348)
T 2pml_X 312 AERITSEDALK 322 (348)
T ss_dssp GGSCCHHHHHT
T ss_pred hhCCCHHHHhc
Confidence 99999999986
No 261
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.2e-37 Score=344.78 Aligned_cols=257 Identities=20% Similarity=0.251 Sum_probs=197.1
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-chhHHHHHHHHH-HHhcCCCCceEEEeecccccccCC
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-GASKSFLAECKA-LKNIRHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~~ 737 (988)
...++|++.+.||+|+||.||+|++..+|+.||||+++.... .....+..|+.+ ++.++||||+++++++.. +
T Consensus 48 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~-----~ 122 (340)
T 3an0_A 48 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-----E 122 (340)
T ss_dssp CCSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEEC-----S
T ss_pred EehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEe-----C
Confidence 345789999999999999999999988999999999975432 233455666665 677899999999999643 4
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI 817 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 817 (988)
+..++||||++ |+|.+++.... .....+++..++.++.||+.||+|||++ .+|+||||||+||+++.++.
T Consensus 123 ~~~~lv~e~~~-~~L~~~l~~~~-------~~~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~ 192 (340)
T 3an0_A 123 GDVWICMELMD-TSLDKFYKQVI-------DKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQ 192 (340)
T ss_dssp SCEEEEECCCS-EEHHHHHHHHH-------HTSCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTC
T ss_pred CcEEEEHHHhh-CcHHHHHHHHH-------hcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCC
Confidence 78999999996 59988875311 0013689999999999999999999973 28999999999999999999
Q ss_pred EEEeeecccccccccccccceeccccccccccccCcccC----CCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcch
Q 001974 818 AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL----GSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNL 893 (988)
Q Consensus 818 ~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 893 (988)
+||+|||+++....... .....||+.|+|||++. ...++.++|||||||++|||++|+.||...... .
T Consensus 193 ~kl~Dfg~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~---~ 264 (340)
T 3an0_A 193 VKMCDFGISGYLVDSVA-----KTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP---F 264 (340)
T ss_dssp EEECCCSHHHHHSCHHH-----HHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCH---H
T ss_pred EEEeeCCCceecccccc-----cccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccch---H
Confidence 99999999986543221 11235899999999964 347899999999999999999999998642111 1
Q ss_pred HHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 894 HNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 894 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
. ........ ..+. .....++.++.+++.+||+.||++|||++|+++
T Consensus 265 ~-~~~~~~~~-----~~~~---------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 265 Q-QLKQVVEE-----PSPQ---------------------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp H-HHHHHHHS-----CCCC---------------------CCGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred H-HHHHHhcC-----CCCC---------------------CCcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 0 00000000 0000 001246778999999999999999999999987
No 262
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=3.4e-37 Score=369.85 Aligned_cols=260 Identities=22% Similarity=0.375 Sum_probs=206.5
Q ss_pred hhCCCCCCceeccccceeEEEEEECC---CCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQ---DGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQG 736 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 736 (988)
..++|++.+.||+|+||.||+|.+.. .+..||+|+++... ....+.+.+|+.++++++||||+++++++.
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~------ 461 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 461 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC------
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe------
Confidence 34678889999999999999999854 34679999986433 233467899999999999999999999863
Q ss_pred CCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCC
Q 001974 737 NDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDM 816 (988)
Q Consensus 737 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~ 816 (988)
++..++||||+++|+|.+++.... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 462 ~~~~~lv~E~~~~g~L~~~l~~~~----------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~ 528 (656)
T 2j0j_A 462 ENPVWIIMELCTLGELRSFLQVRK----------FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSND 528 (656)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTT----------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETT
T ss_pred cCceEEEEEcCCCCcHHHHHHhcc----------CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCC
Confidence 256899999999999999996443 2589999999999999999999999 999999999999999999
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHh-CCCCCCccccCCcchHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGDLNLHN 895 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 895 (988)
.+||+|||+++......... .....+|+.|+|||++.+..++.++|||||||++|||++ |..||...... .
T Consensus 529 ~vkL~DFG~a~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~-----~ 600 (656)
T 2j0j_A 529 CVKLGDFGLSRYMEDSTYYK---ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN-----D 600 (656)
T ss_dssp EEEECCCCCCCSCCC-------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----H
T ss_pred CEEEEecCCCeecCCCccee---ccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH-----H
Confidence 99999999998664432211 122346789999999988899999999999999999997 99998642111 1
Q ss_pred HHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHH
Q 001974 896 YARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNA 974 (988)
Q Consensus 896 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 974 (988)
... .+.. ......+..+++.+.+++.+||+.||++|||++|+++.|+++.++
T Consensus 601 ~~~-----~i~~----------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 601 VIG-----RIEN----------------------GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp HHH-----HHHH----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHH-----HHHc----------------------CCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 100 0000 001112346778899999999999999999999999999999765
No 263
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=344.22 Aligned_cols=280 Identities=21% Similarity=0.210 Sum_probs=198.8
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccc-cCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDF-QGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~ 738 (988)
.++|.+.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.+++.++||||+++++++..... ....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 468999999999999999999999899999999986432 2334678899999999999999999998654311 1113
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||++ ++|.+++.. .+++.++..++.||+.||+|||++ +|+||||||+||+++.++.+
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~-------------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~ 165 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL-------------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCEL 165 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS-------------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCE
T ss_pred eEEEEecccc-CCHHHHhcC-------------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcE
Confidence 4599999995 799888742 478999999999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCC-CCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-SEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYA 897 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 897 (988)
||+|||+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ......
T Consensus 166 kl~Dfg~~~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~i 236 (353)
T 3coi_A 166 KILDFGLARHADAE-------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL--DQLTQI 236 (353)
T ss_dssp EECSTTCTTC---------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH--HHHHHH
T ss_pred EEeecccccCCCCC-------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHH
Confidence 99999999864332 123458999999999887 67899999999999999999999998642110 000000
Q ss_pred HHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 898 RTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 898 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.........++...........+........+.........+++++.+++.+||+.||++|||++|+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 237 LKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp HHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0000000000000000000000000000000000011123567889999999999999999999999863
No 264
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.7e-37 Score=354.62 Aligned_cols=270 Identities=21% Similarity=0.299 Sum_probs=195.2
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccc-cCCCceE
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDF-QGNDFKA 741 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~~ 741 (988)
.+|++.+.||+|+||.||+|++..+|+.||||++.... ....+|++++++++||||+++++++..... .+....+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46889999999999999999999899999999986432 223479999999999999999998754311 1223467
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC-CcEEE
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND-MIAHV 820 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kL 820 (988)
+||||++ +++.+.+.... .....+++..++.++.||+.||+|||+. +|+||||||+|||++.+ +.+||
T Consensus 130 lv~e~~~-~~l~~~~~~~~-------~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl 198 (420)
T 1j1b_A 130 LVLDYVP-ETVYRVARHYS-------RAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKL 198 (420)
T ss_dssp EEEECCC-EEHHHHHHHHH-------HTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEE
T ss_pred eehhccc-ccHHHHHHHHh-------hccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEe
Confidence 9999996 46665553210 0113689999999999999999999998 99999999999999955 67899
Q ss_pred eeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 821 GDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 821 ~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
+|||+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||...... ..+.....
T Consensus 199 ~DFG~a~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~-~~l~~i~~- 271 (420)
T 1j1b_A 199 CDFGSAKQLVRGEP-----NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIK- 271 (420)
T ss_dssp CCCTTCEECCTTCC-----CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHH-
T ss_pred ccchhhhhcccCCC-----ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHH-
Confidence 99999986543322 1234689999999998765 7899999999999999999999998642111 01111111
Q ss_pred HHhh----hhhhhhcccccc------CcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 900 ALLD----HVIDIVDPILIN------DVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 900 ~~~~----~~~~~~d~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
.... .+... ++.... ....|.. ......+.++.+|+.+||+.||++|||+.|+++
T Consensus 272 ~lg~p~~~~~~~~-~~~~~~~~~p~~~~~~~~~-----------~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 272 VLGTPTREQIREM-NPNYTEFKFPQIKAHPWTK-----------VFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHCSCCHHHHHHH-CSCCCCCCCCCCCCCCHHH-----------HSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhCCCCHHHHHhh-ChhhhhhccCccCCCCHHH-----------hcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 0000 01110 110000 0001100 012346788999999999999999999999985
No 265
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=4.4e-37 Score=333.43 Aligned_cols=252 Identities=25% Similarity=0.316 Sum_probs=200.9
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|++++++++||||+++++++. ..+.
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 95 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSSS 95 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----CCCe
Confidence 467999999999999999999998899999999986432 234578899999999999999999999954 3478
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC---C
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND---M 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~---~ 816 (988)
.++||||+++++|.+++... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++.+ +
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~ 161 (287)
T 2wei_A 96 FYIVGELYTGGELFDEIIKR-----------KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDC 161 (287)
T ss_dssp EEEEECCCCSCBHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred EEEEEEccCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcc
Confidence 89999999999999887543 3689999999999999999999999 99999999999999754 4
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||++......... ....|++.|+|||.+.+ .++.++||||||+++|+|++|+.||..... ...
T Consensus 162 ~~kL~Dfg~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~ 230 (287)
T 2wei_A 162 DIKIIDFGLSTCFQQNTKM-----KDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE-----YDI 230 (287)
T ss_dssp CEEECSTTGGGTBCCCSSC-----SCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred cEEEeccCcceeecCCCcc-----ccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCH-----HHH
Confidence 7999999999865443221 12348899999999876 489999999999999999999999864211 111
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
... +.. ....... .....++.++.+++.+||+.||++|||++|+++.
T Consensus 231 ~~~-----~~~---~~~~~~~----------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 231 LKR-----VET---GKYAFDL----------------PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp HHH-----HHH---CCCCCCS----------------GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHH-----HHc---CCCCCCc----------------hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 110 000 0000000 0112467789999999999999999999999873
No 266
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=1.3e-36 Score=332.73 Aligned_cols=260 Identities=22% Similarity=0.324 Sum_probs=195.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeeccccc--------
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSID-------- 733 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-------- 733 (988)
.++|++.+.||+|+||.||+|++..+++.||+|+++.. ....+.+.+|+.++++++||||+++++++....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 45789999999999999999999889999999999643 334577899999999999999999999875421
Q ss_pred ccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC
Q 001974 734 FQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD 813 (988)
Q Consensus 734 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~ 813 (988)
.......++||||+++++|.+++.... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~ 150 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSEN----------LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFID 150 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSC----------GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccc----------cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEc
Confidence 123467899999999999999997543 3678889999999999999999999 999999999999999
Q ss_pred CCCcEEEeeecccccccccccc----------cceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCC
Q 001974 814 NDMIAHVGDFGLARVRQEVSNL----------TQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKP 882 (988)
Q Consensus 814 ~~~~~kL~DfG~a~~~~~~~~~----------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p 882 (988)
.++.+||+|||.+......... .........||+.|+|||++.+. .++.++|||||||++|||++ |
T Consensus 151 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p 227 (303)
T 1zy4_A 151 ESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---P 227 (303)
T ss_dssp TTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---C
T ss_pred CCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---c
Confidence 9999999999999865432110 01112234689999999998864 68999999999999999998 5
Q ss_pred CCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHH
Q 001974 883 TDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSIT 962 (988)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ 962 (988)
|..... .......+... ..... .......+..+.+++.+||+.||++|||++
T Consensus 228 ~~~~~~---------~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ 279 (303)
T 1zy4_A 228 FSTGME---------RVNILKKLRSV-SIEFP------------------PDFDDNKMKVEKKIIRLLIDHDPNKRPGAR 279 (303)
T ss_dssp CSSHHH---------HHHHHHHHHST-TCCCC------------------TTCCTTTSHHHHHHHHHHTCSSGGGSCCHH
T ss_pred cCCchh---------HHHHHHhcccc-ccccC------------------ccccccchHHHHHHHHHHHhcCcccCcCHH
Confidence 432100 00001111100 00000 011235667789999999999999999999
Q ss_pred HHHH
Q 001974 963 NVVH 966 (988)
Q Consensus 963 evl~ 966 (988)
|+++
T Consensus 280 ~ll~ 283 (303)
T 1zy4_A 280 TLLN 283 (303)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 267
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=8.1e-37 Score=338.71 Aligned_cols=259 Identities=20% Similarity=0.260 Sum_probs=177.5
Q ss_pred hhCCCCCCc-eeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 661 ATDGFSSTH-LIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 661 ~~~~y~~~~-~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
..++|.+.+ .||+|+||+||+|++..+++.||||++.... .........++.+.||||+++++++... ...+..
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 100 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENM-HHGKRC 100 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCce
Confidence 356788855 6999999999999999899999999986421 2222233345667999999999997643 223456
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC---CC
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN---DM 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~ 816 (988)
.++||||+++|+|.+++..... ..+++.+++.++.||+.||+|||+. +|+||||||+||+++. ++
T Consensus 101 ~~lv~e~~~gg~L~~~l~~~~~---------~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~ 168 (336)
T 3fhr_A 101 LLIIMECMEGGELFSRIQERGD---------QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDA 168 (336)
T ss_dssp EEEEEECCTTEEHHHHHHTC-C---------CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTC
T ss_pred EEEEEeccCCCCHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCc
Confidence 8999999999999999976532 3689999999999999999999999 9999999999999976 45
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||+++...... .....||+.|+|||++.+..++.++|||||||++|+|++|+.||......... .
T Consensus 169 ~~kl~Dfg~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~- 239 (336)
T 3fhr_A 169 VLKLTDFGFAKETTQNA------LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS--P- 239 (336)
T ss_dssp CEEECCCTTCEEC----------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------
T ss_pred eEEEeccccceeccccc------cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhh--h-
Confidence 69999999998654321 12245899999999998889999999999999999999999998643211100 0
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.....+. ...... .......++.++.+++.+||+.||++|||++|+++.
T Consensus 240 ---~~~~~~~---~~~~~~----------------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 288 (336)
T 3fhr_A 240 ---GMKRRIR---LGQYGF----------------PNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH 288 (336)
T ss_dssp -----------------CC----------------CTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred ---hHHHhhh---cccccc----------------CchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000000 000000 001113567889999999999999999999999973
No 268
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=2.7e-37 Score=340.34 Aligned_cols=243 Identities=23% Similarity=0.298 Sum_probs=199.6
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc------hhHHHHHHHHHHHhcC--CCCceEEEeeccc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG------ASKSFLAECKALKNIR--HRNLVKVITSCSS 731 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~~~~~~~~ 731 (988)
...++|++.+.||+|+||.||+|++..+++.||||+++..... ..+.+.+|+.++++++ |+||+++++++.
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~- 118 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE- 118 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE-
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe-
Confidence 3457899999999999999999999989999999999754321 2245778999999995 599999999954
Q ss_pred ccccCCCceEEEEeeccc-cchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCe
Q 001974 732 IDFQGNDFKALVYEFMTN-GSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNV 810 (988)
Q Consensus 732 ~~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 810 (988)
.++..++||||+.+ ++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||
T Consensus 119 ----~~~~~~lv~e~~~~~~~L~~~l~~~-----------~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NI 180 (320)
T 3a99_A 119 ----RPDSFVLILERPEPVQDLFDFITER-----------GALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENI 180 (320)
T ss_dssp ----CSSEEEEEEECCSSEEEHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGE
T ss_pred ----cCCcEEEEEEcCCCCccHHHHHhcc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHE
Confidence 44789999999976 8999998643 3689999999999999999999998 999999999999
Q ss_pred eeC-CCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCC-CCccchHHHHHHHHHHHhCCCCCCcccc
Q 001974 811 LLD-NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEV-STNGDIYSYGILLLEMVTGKKPTDVMFE 888 (988)
Q Consensus 811 ll~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~ 888 (988)
+++ +++.+||+|||+++...... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||....
T Consensus 181 ll~~~~~~~kL~Dfg~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~- 253 (320)
T 3a99_A 181 LIDLNRGELKLIDFGSGALLKDTV------YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE- 253 (320)
T ss_dssp EEETTTTEEEECCCTTCEECCSSC------BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-
T ss_pred EEeCCCCCEEEeeCcccccccccc------ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-
Confidence 999 78999999999998664322 122458999999999877665 678999999999999999999986310
Q ss_pred CCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 889 GDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
. . .. ........++.++.+++.+||+.||++|||++|+++
T Consensus 254 ------~---------~---~~--------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 254 ------E---------I---IR--------------------GQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp ------H---------H---HH--------------------CCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------h---------h---hc--------------------ccccccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 0 00 000112356778999999999999999999999986
No 269
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=342.78 Aligned_cols=268 Identities=22% Similarity=0.303 Sum_probs=201.6
Q ss_pred HHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 001974 655 YESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCSSI 732 (988)
Q Consensus 655 ~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 732 (988)
..++....++|++.+.||+|+||.||+|++.. .||+|+++... ....+.+.+|+.++++++||||+++++++..
T Consensus 25 ~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~- 100 (319)
T 2y4i_B 25 LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS- 100 (319)
T ss_dssp GGGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC-
T ss_pred cccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec-
Confidence 34444556889999999999999999999853 49999986432 2334567889999999999999999999653
Q ss_pred cccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee
Q 001974 733 DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL 812 (988)
Q Consensus 733 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll 812 (988)
++..++||||+++++|.+++.... ..+++.+++.++.||+.||+|||+. +|+||||||+||++
T Consensus 101 ----~~~~~iv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~ 163 (319)
T 2y4i_B 101 ----PPHLAIITSLCKGRTLYSVVRDAK----------IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFY 163 (319)
T ss_dssp ----SSCEEEECBCCCSEEHHHHTTSSC----------CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEE
T ss_pred ----CCceEEEeecccCCcHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEE
Confidence 477999999999999999997654 2588999999999999999999999 99999999999999
Q ss_pred CCCCcEEEeeecccccccccccc-cceeccccccccccccCcccCC---------CCCCCccchHHHHHHHHHHHhCCCC
Q 001974 813 DNDMIAHVGDFGLARVRQEVSNL-TQSCSVGVRGTIGYAAPEYGLG---------SEVSTNGDIYSYGILLLEMVTGKKP 882 (988)
Q Consensus 813 ~~~~~~kL~DfG~a~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~sDvwslG~vl~elltg~~p 882 (988)
+ ++.+||+|||+++........ .........|++.|+|||++.+ ..++.++||||||+++|||++|+.|
T Consensus 164 ~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p 242 (319)
T 2y4i_B 164 D-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWP 242 (319)
T ss_dssp C---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred e-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCC
Confidence 8 679999999998754322111 1111223458999999999874 3578899999999999999999999
Q ss_pred CCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHH
Q 001974 883 TDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSIT 962 (988)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ 962 (988)
|..... ..... .+.....+. .....++.++.+++.+||+.||++|||++
T Consensus 243 ~~~~~~-----~~~~~-----~~~~~~~~~---------------------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~ 291 (319)
T 2y4i_B 243 FKTQPA-----EAIIW-----QMGTGMKPN---------------------LSQIGMGKEISDILLFCWAFEQEERPTFT 291 (319)
T ss_dssp SSSCCH-----HHHHH-----HHHTTCCCC---------------------CCCSSCCTTHHHHHHHHHCSSTTTSCCHH
T ss_pred CCCCCH-----HHHHH-----HhccCCCCC---------------------CCcCCCCHHHHHHHHHHhcCChhhCcCHH
Confidence 863211 11110 010000000 01124567799999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001974 963 NVVHELQSVKNAL 975 (988)
Q Consensus 963 evl~~L~~i~~~~ 975 (988)
|+++.|+++.++.
T Consensus 292 ~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 292 KLMDMLEKLPKRN 304 (319)
T ss_dssp HHHHHHTTC----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987664
No 270
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=5.9e-37 Score=347.15 Aligned_cols=277 Identities=21% Similarity=0.239 Sum_probs=192.6
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccc-cCCCce
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDF-QGNDFK 740 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~~~~ 740 (988)
..+|++.+.||+|+||+||+|++..+++ ||+|++..... ...+|+++++.++||||+++++++..... .+....
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~ 113 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence 3469999999999999999999975555 88887753322 22379999999999999999999765421 233447
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC-CCCcEE
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD-NDMIAH 819 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~k 819 (988)
++||||++++.+........ ..+.+++..++.++.||+.||+|||+. +|+||||||+||+++ .++.+|
T Consensus 114 ~lv~e~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~k 182 (394)
T 4e7w_A 114 NLVLEYVPETVYRASRHYAK--------LKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLK 182 (394)
T ss_dssp EEEEECCSEEHHHHHHHHHH--------TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEE
T ss_pred EEEeeccCccHHHHHHHHHh--------hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEE
Confidence 89999997654433221100 013689999999999999999999999 999999999999999 799999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
|+|||+|+........ ....||+.|+|||++.+. .++.++||||+||++|||++|+.||...... ..+.....
T Consensus 183 L~DFG~a~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~ 256 (394)
T 4e7w_A 183 LIDFGSAKILIAGEPN-----VSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIK 256 (394)
T ss_dssp ECCCTTCEECCTTCCC-----CSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHH
T ss_pred EeeCCCcccccCCCCC-----cccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHH
Confidence 9999999865443221 234589999999998765 5899999999999999999999998642111 00111111
Q ss_pred HHHhhhhh---hhhcccccc-CcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 899 TALLDHVI---DIVDPILIN-DVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 899 ~~~~~~~~---~~~d~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
....... ...++.... ...... .. .........+++++.+++.+||+.||++|||+.|+++.
T Consensus 257 -~~g~p~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 257 -VLGTPSREQIKTMNPNYMEHKFPQIR---PH---PFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp -HHCCCCHHHHHHHCGGGSSSCCCCCC---CC---CHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred -HhCCCCHHHHHhhChhhhhhcccccc---CC---cHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 0000000 000000000 000000 00 00001123467889999999999999999999999863
No 271
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1.7e-36 Score=337.56 Aligned_cols=277 Identities=19% Similarity=0.259 Sum_probs=202.9
Q ss_pred hCCCCCCceeccccceeEEEEEE-CCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCC------ceEEEeecccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAF-DQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRN------LVKVITSCSSIDF 734 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~ 734 (988)
.++|++.+.||+|+||.||+|.+ ..+++.||||+++.. ....+.+.+|+++++.++|++ ++++++++.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~---- 87 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE---- 87 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE----
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc----
Confidence 46899999999999999999998 557899999998643 234567889999999987654 999999854
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN 814 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 814 (988)
.++..++||||+ +++|.+++..... .++++.+++.++.||+.||+|||++ +|+||||||+||+++.
T Consensus 88 -~~~~~~lv~e~~-~~~l~~~l~~~~~---------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~ 153 (339)
T 1z57_A 88 -HHGHICIVFELL-GLSTYDFIKENGF---------LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQ 153 (339)
T ss_dssp -ETTEEEEEEECC-CCBHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESC
T ss_pred -cCCcEEEEEcCC-CCCHHHHHHhcCC---------CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEec
Confidence 347899999999 8999999865432 2588999999999999999999999 9999999999999987
Q ss_pred -------------------CCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHH
Q 001974 815 -------------------DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLE 875 (988)
Q Consensus 815 -------------------~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~e 875 (988)
++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~e 226 (339)
T 1z57_A 154 SDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHH-------STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIE 226 (339)
T ss_dssp CCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCC-------CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHH
T ss_pred cccccccCCccccccccccCCCceEeeCcccccCcccc-------ccccCCccccChHHhhCCCCCcchhhHHHHHHHHH
Confidence 6689999999998643321 22458999999999999999999999999999999
Q ss_pred HHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhc-----cccccCcchhhhhhHHH--Hh------hhhhccccchhHH
Q 001974 876 MVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVD-----PILINDVEDWDATNKQR--LR------QAKINGKIECPIS 942 (988)
Q Consensus 876 lltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~l~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~ 942 (988)
|++|+.||...... ................+.. ........+|....... .. ..........+++
T Consensus 227 l~~g~~pf~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (339)
T 1z57_A 227 YYLGFTVFPTHDSK--EHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHER 304 (339)
T ss_dssp HHHSSCSCCCSCHH--HHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHH
T ss_pred HHhCCCCCCCCChH--HHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHH
Confidence 99999998743111 1111111111100000000 00000111121111000 00 0001122346788
Q ss_pred HHHHhhcccCcCCCCCCCHHHHHH
Q 001974 943 MVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 943 l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+.+++.+||+.||++|||++|+++
T Consensus 305 l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 305 LFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHhCcCcccccCHHHHhc
Confidence 999999999999999999999975
No 272
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.1e-37 Score=336.78 Aligned_cols=243 Identities=23% Similarity=0.303 Sum_probs=193.0
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc------hhHHHHHHHHHHHhc----CCCCceEEEeec
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG------ASKSFLAECKALKNI----RHRNLVKVITSC 729 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~niv~~~~~~ 729 (988)
...++|++.+.||+|+||.||+|++..+++.||+|+++..... ....+.+|+.++.++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 3457899999999999999999999889999999999644321 223456799999998 899999999995
Q ss_pred ccccccCCCceEEEEee-ccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCC
Q 001974 730 SSIDFQGNDFKALVYEF-MTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPG 808 (988)
Q Consensus 730 ~~~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~ 808 (988)
. ..+..++|||| +.+++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+
T Consensus 108 ~-----~~~~~~~v~e~~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~ 168 (312)
T 2iwi_A 108 E-----TQEGFMLVLERPLPAQDLFDYITEK-----------GPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDE 168 (312)
T ss_dssp ----------CEEEEECCSSEEEHHHHHHHH-----------CSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGG
T ss_pred e-----cCCeEEEEEEecCCCCCHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChh
Confidence 4 34778999999 7899999998643 2589999999999999999999999 9999999999
Q ss_pred CeeeC-CCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCC-CccchHHHHHHHHHHHhCCCCCCcc
Q 001974 809 NVLLD-NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVS-TNGDIYSYGILLLEMVTGKKPTDVM 886 (988)
Q Consensus 809 NIll~-~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDvwslG~vl~elltg~~p~~~~ 886 (988)
||+++ .++.+||+|||++....... .....|+..|+|||++.+..+. .++||||||+++|||++|+.||...
T Consensus 169 Nil~~~~~~~~kl~dfg~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 242 (312)
T 2iwi_A 169 NILIDLRRGCAKLIDFGSGALLHDEP------YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD 242 (312)
T ss_dssp GEEEETTTTEEEECCCSSCEECCSSC------BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred hEEEeCCCCeEEEEEcchhhhcccCc------ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh
Confidence 99999 88999999999998665432 1234589999999998776664 5899999999999999999998631
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 887 FEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
. . +. . .....+..++.++.+++.+||+.||++|||++|+++
T Consensus 243 ~-------~---------~~---~--------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 243 Q-------E---------IL---E--------------------AELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp H-------H---------HH---H--------------------TCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred H-------H---------Hh---h--------------------hccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 0 00 0 001112346778999999999999999999999987
No 273
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=1.7e-36 Score=342.38 Aligned_cols=281 Identities=19% Similarity=0.270 Sum_probs=202.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-----------CCCceEEEeecc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-----------HRNLVKVITSCS 730 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~~~~~~~ 730 (988)
.++|++.+.||+|+||+||+|++..+++.||||++... ....+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 46799999999999999999999989999999998643 234467889999999886 899999999876
Q ss_pred cccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCe
Q 001974 731 SIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNV 810 (988)
Q Consensus 731 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NI 810 (988)
.. .......++||||+ +++|.+++..... ..+++..++.++.||+.||+|||+++ +|+||||||+||
T Consensus 97 ~~-~~~~~~~~lv~e~~-~~~L~~~~~~~~~---------~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NI 163 (373)
T 1q8y_A 97 HK-GPNGVHVVMVFEVL-GENLLALIKKYEH---------RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENV 163 (373)
T ss_dssp EE-ETTEEEEEEEECCC-CEEHHHHHHHTTT---------SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGE
T ss_pred cc-CCCCceEEEEEecC-CCCHHHHHHHhhc---------cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHe
Confidence 43 12234789999999 9999999865432 35899999999999999999999942 899999999999
Q ss_pred eeC------CCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001974 811 LLD------NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTD 884 (988)
Q Consensus 811 ll~------~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~ 884 (988)
+++ ..+.+||+|||++....... ....||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 164 ll~~~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 236 (373)
T 1q8y_A 164 LMEIVDSPENLIQIKIADLGNACWYDEHY-------TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFE 236 (373)
T ss_dssp EEEEEETTTTEEEEEECCCTTCEETTBCC-------CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-
T ss_pred EEeccCCCcCcceEEEcccccccccCCCC-------CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 994 44589999999998654321 12358999999999999999999999999999999999999997
Q ss_pred ccccCCcchHHHHHHHHhhhhhh--------------hhccc-ccc---CcchhhhhhHHHHhhhhhccccchhHHHHHH
Q 001974 885 VMFEGDLNLHNYARTALLDHVID--------------IVDPI-LIN---DVEDWDATNKQRLRQAKINGKIECPISMVRI 946 (988)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~~-l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 946 (988)
................+.+.... +++.. ... ....|. ...........+..++.++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 313 (373)
T 1q8y_A 237 PDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWP---LEDVLTEKYKFSKDEAKEISDF 313 (373)
T ss_dssp --------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCC---HHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccc---hhhhhhhcccCCcchHHHHHHH
Confidence 43221110000000000000000 00000 000 000000 0111122223345677889999
Q ss_pred hhcccCcCCCCCCCHHHHHH
Q 001974 947 GVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 947 i~~cl~~dP~~RPs~~evl~ 966 (988)
+.+||+.||++|||++|+++
T Consensus 314 i~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 314 LSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp HGGGGCSSTTTCBCHHHHHT
T ss_pred HHHHhccCccccCCHHHHhh
Confidence 99999999999999999986
No 274
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=344.37 Aligned_cols=211 Identities=24% Similarity=0.310 Sum_probs=156.0
Q ss_pred CCCC-CceeccccceeEEEEEEC--CCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCce
Q 001974 664 GFSS-THLIGMGSFGSVYKGAFD--QDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 664 ~y~~-~~~lg~G~~g~Vy~a~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 740 (988)
.|++ .++||+|+||+||+|++. .+++.||+|++... .....+.+|+.++++++||||+++++++.. ..+...
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~~ 95 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLS---HADRKV 95 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTEE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCeE
Confidence 3555 468999999999999975 46889999998643 234678899999999999999999999643 235788
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee----CCCC
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL----DNDM 816 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll----~~~~ 816 (988)
++||||++ ++|.+++........ ......+++..++.|+.||+.||+|||+. +|+||||||+|||+ +.++
T Consensus 96 ~lv~e~~~-~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 169 (405)
T 3rgf_A 96 WLLFDYAE-HDLWHIIKFHRASKA--NKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERG 169 (405)
T ss_dssp EEEEECCS-EEHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTT
T ss_pred EEEEeCCC-CCHHHHHHHhccccc--cccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCC
Confidence 99999994 688887753210000 00012589999999999999999999999 99999999999999 7788
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCC-CCCCccchHHHHHHHHHHHhCCCCCCcc
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS-EVSTNGDIYSYGILLLEMVTGKKPTDVM 886 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 886 (988)
.+||+|||+|+........ ........||+.|+|||++.+. .++.++|||||||++|||++|+.||...
T Consensus 170 ~~kl~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 170 RVKIADMGFARLFNSPLKP-LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp CEEECCTTCCC-----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred cEEEEECCCceecCCCCcc-cccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999876432211 1112335689999999998874 5899999999999999999999999643
No 275
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=7.9e-37 Score=335.96 Aligned_cols=264 Identities=23% Similarity=0.349 Sum_probs=197.6
Q ss_pred ccccCHHHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--cchhHHHHHHHHHHHhcC--CCCceEE
Q 001974 650 LQKVSYESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--HGASKSFLAECKALKNIR--HRNLVKV 725 (988)
Q Consensus 650 ~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~~ 725 (988)
...+.+.++....++|++.+.||+|+||.||+|++. +++.||+|++.... ....+.+.+|++++++++ ||||+++
T Consensus 15 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~ 93 (313)
T 3cek_A 15 TENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93 (313)
T ss_dssp -----CCEEEETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCE
T ss_pred CCCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEE
Confidence 334444445556678999999999999999999986 68999999997443 234467899999999996 5999999
Q ss_pred EeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccC
Q 001974 726 ITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDL 805 (988)
Q Consensus 726 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dl 805 (988)
++++.. ++..++|||+ .+++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||
T Consensus 94 ~~~~~~-----~~~~~lv~e~-~~~~L~~~l~~~~-----------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dl 153 (313)
T 3cek_A 94 YDYEIT-----DQYIYMVMEC-GNIDLNSWLKKKK-----------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDL 153 (313)
T ss_dssp EEEEEC-----SSEEEEEECC-CSEEHHHHHHHCS-----------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCC
T ss_pred EEEeec-----CCEEEEEEec-CCCcHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCC
Confidence 998643 4779999995 5899999986543 688999999999999999999999 9999999
Q ss_pred CCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCC-----------CCCCCccchHHHHHHHH
Q 001974 806 KPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-----------SEVSTNGDIYSYGILLL 874 (988)
Q Consensus 806 kp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwslG~vl~ 874 (988)
||+||++++ +.+||+|||+++........ .......|++.|+|||++.+ ..++.++||||||+++|
T Consensus 154 kp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~ 230 (313)
T 3cek_A 154 KPANFLIVD-GMLKLIDFGIANQMQPDTTS--VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILY 230 (313)
T ss_dssp CGGGEEEET-TEEEECCCSSSCC----------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHH
T ss_pred CcccEEEEC-CeEEEeeccccccccCcccc--ccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHH
Confidence 999999974 89999999999865433211 11123458999999999875 46888999999999999
Q ss_pred HHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcC
Q 001974 875 EMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVES 954 (988)
Q Consensus 875 elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d 954 (988)
||++|+.||...... ... .....++... ...+...+.++.+++.+||+.|
T Consensus 231 el~~g~~pf~~~~~~----~~~--------~~~~~~~~~~------------------~~~~~~~~~~l~~li~~~l~~d 280 (313)
T 3cek_A 231 YMTYGKTPFQQIINQ----ISK--------LHAIIDPNHE------------------IEFPDIPEKDLQDVLKCCLKRD 280 (313)
T ss_dssp HHHHSSCTTTTCCSH----HHH--------HHHHHCTTSC------------------CCCCCCSCHHHHHHHHHHTCSS
T ss_pred HHHhCCCchhhHHHH----HHH--------HHHHHhcccc------------------cCCcccchHHHHHHHHHHccCC
Confidence 999999998643211 000 0111111110 0112245677999999999999
Q ss_pred CCCCCCHHHHHHH
Q 001974 955 PQDRMSITNVVHE 967 (988)
Q Consensus 955 P~~RPs~~evl~~ 967 (988)
|++|||++|+++.
T Consensus 281 p~~Rps~~ell~h 293 (313)
T 3cek_A 281 PKQRISIPELLAH 293 (313)
T ss_dssp TTTSCCHHHHHTS
T ss_pred cccCcCHHHHhcC
Confidence 9999999999864
No 276
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=2.9e-36 Score=340.82 Aligned_cols=201 Identities=26% Similarity=0.334 Sum_probs=169.3
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CC-----CceEEEeecccccc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HR-----NLVKVITSCSSIDF 734 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~~~~~~~~~~~ 734 (988)
..++|++.+.||+|+||+||+|++..+++.||||+++.. ......+..|+++++.++ |+ +|+++++++..
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~--- 127 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF--- 127 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE---
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc---
Confidence 457899999999999999999999989999999999643 233467788999988884 55 49999998543
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeC-
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLD- 813 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~- 813 (988)
.+..++||||++ ++|.+++..... ..+++..+..++.|++.||+|||++ ..+||||||||+||+++
T Consensus 128 --~~~~~lv~e~~~-~~L~~~l~~~~~---------~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~ 194 (382)
T 2vx3_A 128 --RNHLCLVFEMLS-YNLYDLLRNTNF---------RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCN 194 (382)
T ss_dssp --TTEEEEEEECCC-CBHHHHHHHTTT---------SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESS
T ss_pred --CCceEEEEecCC-CCHHHHHhhcCc---------CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEec
Confidence 478999999994 699999875432 2589999999999999999999952 23999999999999995
Q ss_pred -CCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCc
Q 001974 814 -NDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDV 885 (988)
Q Consensus 814 -~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 885 (988)
.++.+||+|||+|+...... ....||+.|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus 195 ~~~~~~kL~DFG~a~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 195 PKRSAIKIVDFGSSCQLGQRI-------YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp TTSCCEEECCCTTCEETTCCC-------CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCCCcEEEEeccCceeccccc-------ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 57889999999998654321 224589999999999999999999999999999999999999874
No 277
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.8e-36 Score=332.76 Aligned_cols=261 Identities=20% Similarity=0.255 Sum_probs=179.4
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc-chhHHHHHHHH-HHHhcCCCCceEEEeecccccccCCC
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-GASKSFLAECK-ALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~-~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
..++|++.+.||+|+||.||+|.+..+|+.||||+++.... .....+..|+. +++.++||||+++++++.. ++
T Consensus 20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~-----~~ 94 (327)
T 3aln_A 20 TAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR-----EG 94 (327)
T ss_dssp CSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC-----SS
T ss_pred CHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe-----CC
Confidence 34789999999999999999999988999999999975432 23345566666 6677799999999999643 47
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||++ ++|.+++..... .....+++..+..++.|++.||.|||+. .+|+||||||+||+++.++.+
T Consensus 95 ~~~lv~e~~~-~~l~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~ 165 (327)
T 3aln_A 95 DCWICMELMS-TSFDKFYKYVYS------VLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNI 165 (327)
T ss_dssp EEEEEECCCS-EEHHHHHHHHHH------TTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEE
T ss_pred ceEEEEeecC-CChHHHHHHHHh------hhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCE
Confidence 8899999996 588777642100 0013688999999999999999999984 289999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCccc----CCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYG----LGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLH 894 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 894 (988)
||+|||+++........ ....||+.|+|||++ .+..++.++|||||||++|||++|+.||.......
T Consensus 166 kl~Dfg~~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---- 236 (327)
T 3aln_A 166 KLCDFGISGQLVDSIAK-----TRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF---- 236 (327)
T ss_dssp EECCCSSSCC-----------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------
T ss_pred EEccCCCceeccccccc-----ccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH----
Confidence 99999999865432211 123589999999998 45678999999999999999999999986421110
Q ss_pred HHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 895 NYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 895 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
+..... .......+ .......++.++.+++.+||+.||++|||++|+++.
T Consensus 237 --------~~~~~~----~~~~~~~~-----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 286 (327)
T 3aln_A 237 --------DQLTQV----VKGDPPQL-----------SNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKH 286 (327)
T ss_dssp -----------CCC----CCSCCCCC-----------CCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred --------HHHHHH----hcCCCCCC-----------CCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence 000000 00000000 001123567889999999999999999999999763
No 278
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=2.2e-36 Score=354.69 Aligned_cols=286 Identities=21% Similarity=0.255 Sum_probs=205.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecc-ccchhHHHHHHHHHHHhcCCCCceEEEeeccccc-ccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQ-RHGASKSFLAECKALKNIRHRNLVKVITSCSSID-FQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|.+..+|+.||||+++.. .....+.+.+|++++++++||||+++++++.... +..++.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 36899999999999999999999889999999998654 2334567899999999999999999999875421 233677
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCc--
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMI-- 817 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~-- 817 (988)
.++||||+++|+|.+++...... ..+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~--------~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~ 161 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENC--------CGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRL 161 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCT--------TCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSC
T ss_pred EEEEEEeCCCCCHHHHHHhcccC--------CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCce
Confidence 89999999999999999764321 2578889999999999999999998 9999999999999997664
Q ss_pred -EEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 818 -AHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 818 -~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
+||+|||.+......... ....||+.|+|||++.+..++.++|||||||++|||++|+.||..... ...|
T Consensus 162 ~vKL~DFG~a~~~~~~~~~-----~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~----~~~~ 232 (676)
T 3qa8_A 162 IHKIIDLGYAKELDQGELC-----TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ----PVQW 232 (676)
T ss_dssp EEEECSCCCCCBTTSCCCC-----CCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH----HHHS
T ss_pred eEEEccccccccccccccc-----ccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc----hhhh
Confidence 999999999876543321 234689999999999999999999999999999999999999864211 0010
Q ss_pred HHHHHhhhhh-hhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHH-----HHHHHHH
Q 001974 897 ARTALLDHVI-DIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITN-----VVHELQS 970 (988)
Q Consensus 897 ~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e-----vl~~L~~ 970 (988)
.......... ........+.. .|.. .. .........++..+.+++.+||+.||++|||++| +.+.++.
T Consensus 233 ~~~i~~~~~~~~~~~~~l~g~~-~~~~----~l-p~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~ 306 (676)
T 3qa8_A 233 HGKVREKSNEHIVVYDDLTGAV-KFSS----VL-PTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDS 306 (676)
T ss_dssp STTCC------CCSCCCCSSSC-CCCS----SS-CCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHH
T ss_pred hhhhhcccchhhhhhhhhcccc-cccc----cc-CCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHH
Confidence 0000000000 00000000000 0000 00 0000122347788999999999999999999998 4555555
Q ss_pred HHH
Q 001974 971 VKN 973 (988)
Q Consensus 971 i~~ 973 (988)
+.+
T Consensus 307 iL~ 309 (676)
T 3qa8_A 307 ILS 309 (676)
T ss_dssp HHC
T ss_pred HHh
Confidence 543
No 279
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=7.7e-36 Score=334.64 Aligned_cols=277 Identities=18% Similarity=0.255 Sum_probs=199.1
Q ss_pred hCCCCCCceeccccceeEEEEEECCCC-eEEEEEEeeccccchhHHHHHHHHHHHhcCCCC------ceEEEeecccccc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDG-TIVAIKVFNLQRHGASKSFLAECKALKNIRHRN------LVKVITSCSSIDF 734 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~ 734 (988)
.++|++.+.||+|+||+||+|.+..++ +.||+|+++.. ....+.+.+|+.++++++|++ ++.+++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~---- 92 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFN---- 92 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEE----
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeee----
Confidence 468999999999999999999997776 79999999643 234567889999999997665 888888754
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeee--
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLL-- 812 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll-- 812 (988)
..+..++||||+ ++++.+++..... ..+++.+++.++.||+.||+|||+. +|+||||||+||++
T Consensus 93 -~~~~~~lv~e~~-~~~l~~~l~~~~~---------~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~ 158 (355)
T 2eu9_A 93 -FHGHMCIAFELL-GKNTFEFLKENNF---------QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVN 158 (355)
T ss_dssp -ETTEEEEEEECC-CCBHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESC
T ss_pred -eCCeEEEEEecc-CCChHHHHHhccC---------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEec
Confidence 347899999999 6677766654321 3689999999999999999999998 99999999999999
Q ss_pred -----------------CCCCcEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHH
Q 001974 813 -----------------DNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLE 875 (988)
Q Consensus 813 -----------------~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~e 875 (988)
+.++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~e 231 (355)
T 2eu9_A 159 SEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHH-------TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFE 231 (355)
T ss_dssp CCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCC-------CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCcEEEeecCccccccccc-------cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHH
Confidence 567899999999998643321 22458999999999999999999999999999999
Q ss_pred HHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccc-----cccCcchhhhhhHH--HHhh------hhhccccchhHH
Q 001974 876 MVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPI-----LINDVEDWDATNKQ--RLRQ------AKINGKIECPIS 942 (988)
Q Consensus 876 lltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----l~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~ 942 (988)
|++|+.||...... ................+.... .......|...... .... .........+.+
T Consensus 232 l~~g~~pf~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 2eu9_A 232 YYRGFTLFQTHENR--EHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQ 309 (355)
T ss_dssp HHHSSCSCCCSSHH--HHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHH
T ss_pred HHhCCCCCCCCCHH--HHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHH
Confidence 99999998743211 111111111111000000000 00000011110000 0000 001112234668
Q ss_pred HHHHhhcccCcCCCCCCCHHHHHH
Q 001974 943 MVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 943 l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
+.+++.+||+.||++|||++|+++
T Consensus 310 l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 310 LFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHhcCChhhCcCHHHHhc
Confidence 999999999999999999999975
No 280
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=332.14 Aligned_cols=253 Identities=20% Similarity=0.293 Sum_probs=180.5
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc-h-hHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG-A-SKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~-~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|++..+|+.||||++...... . .+.+..+..+++.++||||+++++++. .++.
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~~ 98 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI-----TNTD 98 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe-----cCCc
Confidence 46788999999999999999999989999999999754332 2 233445555678889999999999964 3478
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHc-CCCCCeEeccCCCCCeeeCCCCcE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHH-HCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
.++||||+ ++.+..+..... ..+++..++.++.|++.||+|||+ . +|+||||||+||+++.++.+
T Consensus 99 ~~lv~e~~-~~~~~~l~~~~~----------~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~ 164 (318)
T 2dyl_A 99 VFIAMELM-GTCAEKLKKRMQ----------GPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQI 164 (318)
T ss_dssp EEEEECCC-SEEHHHHHHHHT----------SCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCE
T ss_pred EEEEEecc-CCcHHHHHHHhc----------cCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCE
Confidence 99999999 666665543221 368999999999999999999998 5 89999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccC-----CCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcch
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL-----GSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNL 893 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 893 (988)
||+|||++........ .....|++.|+|||++. ...++.++|||||||++|||++|+.||......
T Consensus 165 kl~dfg~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---- 235 (318)
T 2dyl_A 165 KLCDFGISGRLVDDKA-----KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD---- 235 (318)
T ss_dssp EECCCTTC-------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH----
T ss_pred EEEECCCchhccCCcc-----ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc----
Confidence 9999999976543222 12245899999999984 456889999999999999999999998642111
Q ss_pred HHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 894 HNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 894 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
.......... ..+ .......++.++.+++.+||+.||++|||++|+++.
T Consensus 236 ~~~~~~~~~~-----~~~--------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 236 FEVLTKVLQE-----EPP--------------------LLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp HHHHHHHHHS-----CCC--------------------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred HHHHHHHhcc-----CCC--------------------CCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 0111110000 000 001122467889999999999999999999999863
No 281
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5.1e-36 Score=343.87 Aligned_cols=259 Identities=21% Similarity=0.302 Sum_probs=183.5
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCceE
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDFKA 741 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~ 741 (988)
+.|...+.||+|+||+||.+.. .+|+.||||++... ..+.+.+|+++++++ +||||+++++++. .++..+
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~-----~~~~~~ 85 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGS-FQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSET-----TDRFLY 85 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEE-SSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEE-----CSSEEE
T ss_pred heeeccCeEeeCCCeEEEEEEE-ECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCeEE
Confidence 3455568899999999987654 48999999998643 235678999999987 8999999999853 457899
Q ss_pred EEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCC------
Q 001974 742 LVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDND------ 815 (988)
Q Consensus 742 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~------ 815 (988)
+||||+ +|+|.+++......... ....++..++.++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 86 lv~E~~-~gsL~~~l~~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~ 157 (434)
T 2rio_A 86 IALELC-NLNLQDLVESKNVSDEN----LKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTAD 157 (434)
T ss_dssp EEECCC-SEEHHHHHHTC----------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSC
T ss_pred EEEecC-CCCHHHHHhccCCCchh----hhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccc
Confidence 999999 57999999765421110 01123445678999999999999998 99999999999999754
Q ss_pred -------CcEEEeeecccccccccccccceeccccccccccccCcccCC-------CCCCCccchHHHHHHHHHHHh-CC
Q 001974 816 -------MIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLG-------SEVSTNGDIYSYGILLLEMVT-GK 880 (988)
Q Consensus 816 -------~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDvwslG~vl~ellt-g~ 880 (988)
+.+||+|||+++.................||+.|+|||++.+ ..++.++|||||||++|||+| |+
T Consensus 158 ~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~ 237 (434)
T 2rio_A 158 QQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGK 237 (434)
T ss_dssp CTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSC
T ss_pred cccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCC
Confidence 489999999998765433221112233569999999999875 578999999999999999999 99
Q ss_pred CCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCC
Q 001974 881 KPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMS 960 (988)
Q Consensus 881 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs 960 (988)
.||....... ..+.... .+.. .. .......++.++.+++.+||+.||++|||
T Consensus 238 ~Pf~~~~~~~--------~~i~~~~---~~~~---~~--------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps 289 (434)
T 2rio_A 238 HPFGDKYSRE--------SNIIRGI---FSLD---EM--------------KCLHDRSLIAEATDLISQMIDHDPLKRPT 289 (434)
T ss_dssp CTTCSTTTHH--------HHHHHTC---CCCC---CC--------------TTCCCHHHHHHHHHHHHHHTCSSGGGSCC
T ss_pred CCCCCchhhH--------HHHhcCC---CCcc---cc--------------cccccccchHHHHHHHHHHhhCChhhCCC
Confidence 9986321110 0000000 0000 00 00011245678999999999999999999
Q ss_pred HHHHHH
Q 001974 961 ITNVVH 966 (988)
Q Consensus 961 ~~evl~ 966 (988)
++|+++
T Consensus 290 ~~eil~ 295 (434)
T 2rio_A 290 AMKVLR 295 (434)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999985
No 282
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.7e-35 Score=330.56 Aligned_cols=337 Identities=18% Similarity=0.174 Sum_probs=239.7
Q ss_pred cccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccE
Q 001974 198 NLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSY 277 (988)
Q Consensus 198 ~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~ 277 (988)
.+++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3566777777777776 666666666667777777777666655556666666666666666666655555555555555
Q ss_pred EecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEE
Q 001974 278 FNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRL 357 (988)
Q Consensus 278 L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 357 (988)
|++++|.++.++.. .|..++ +|++|++++|++.+..+..+..+++|+.|
T Consensus 122 L~L~~n~l~~l~~~------~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 122 LVLERNDLSSLPRG------IFHNTP-------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp EECCSSCCCCCCTT------TTTTCT-------------------------TCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred EECCCCccCcCCHH------HhcCCC-------------------------CCcEEECCCCccCccChhhccCCCCCCEE
Confidence 55555555433322 122333 56666666666665666667777788888
Q ss_pred EeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCC
Q 001974 358 GMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLN 437 (988)
Q Consensus 358 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 437 (988)
++++|++++. .+..+++|+.|++++|.+++. ...++|+.|++++|.+... |..+ .++|+.|++++|+++
T Consensus 171 ~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 171 QLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLT 239 (390)
T ss_dssp ECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCC
T ss_pred ECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCc
Confidence 8888887743 255667788888888877632 2345788888888888754 3322 467888888888887
Q ss_pred ccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccc
Q 001974 438 GTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSL 517 (988)
Q Consensus 438 ~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 517 (988)
+ + ..+..++.| ++|++++|.+++..|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|..+
T Consensus 240 ~-~-~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 240 D-T-AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp C-C-GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred c-c-HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccc
Confidence 4 3 467778888 88888888888777888888999999999999998 46777788899999999999998 678888
Q ss_pred cCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcccCCCCcccCcccccccccccccCCCCC
Q 001974 518 SSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEGEVPTKGVFANISRISVAGFNRLCGGIP 585 (988)
Q Consensus 518 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~~ 585 (988)
..+++|+.|+|++|+++... ...+++|++|++++|++++.... ..+..+....+.+++..|+++.
T Consensus 315 ~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp HHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTTC
T ss_pred cccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecccc
Confidence 88999999999999998764 45567899999999998875432 2344555556677777887644
No 283
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-35 Score=350.11 Aligned_cols=343 Identities=19% Similarity=0.191 Sum_probs=248.0
Q ss_pred ccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEE
Q 001974 199 LSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYF 278 (988)
Q Consensus 199 l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L 278 (988)
+++++.|++++|.+. .+|..++..+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456667777777766 6666666666666666666666666655566666666666666666666555555555555555
Q ss_pred ecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEE
Q 001974 279 NVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLG 358 (988)
Q Consensus 279 ~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 358 (988)
+|++|.++.+++. .|..++ +|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 129 ~L~~n~l~~l~~~------~~~~l~-------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 129 VLERNDLSSLPRG------IFHNTP-------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp ECCSSCCCCCCTT------TTTTCT-------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred EeeCCCCCCCCHH------HhccCC-------------------------CCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 5555555443332 122333 566666666666666667777778888888
Q ss_pred eeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCc
Q 001974 359 MGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNG 438 (988)
Q Consensus 359 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 438 (988)
|++|.+++. .+..+++|+.|++++|.+++ +...++|+.|++++|.+....+. + .++|+.|+|++|.+++
T Consensus 178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC
T ss_pred CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC
Confidence 888887753 24556778888888887774 23345788888888888744332 2 2578888888888875
Q ss_pred cCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCcccc
Q 001974 439 TIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLS 518 (988)
Q Consensus 439 ~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 518 (988)
+..+..++.| +.|+|++|.+++..|..|+.+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..+.
T Consensus 247 --~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 247 --TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp --CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred --ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 4677888888 889999999988888899999999999999999995 7888888999999999999999 6888889
Q ss_pred CccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcccCCCCcccCcccccccccccccCCCCCCCCCCcc
Q 001974 519 SLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEGEVPTKGVFANISRISVAGFNRLCGGIPELQLPKC 592 (988)
Q Consensus 519 ~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~~~~~~~~~ 592 (988)
.+++|+.|+|++|+|++.+ ...+++|+.|+|++|++++..+. ..+..+....+.+++..|+.+.......|
T Consensus 322 ~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred cCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcchhccCCcc
Confidence 9999999999999998875 44567899999999999886542 33455666677888899997655443444
No 284
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.1e-35 Score=323.45 Aligned_cols=255 Identities=29% Similarity=0.455 Sum_probs=206.8
Q ss_pred cccEEEccCCcccc--CCCccccCCCcceEEEeeC-ccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEE
Q 001974 329 QLQNLIMTSNQLHG--SIPSGIGNLVGLYRLGMGG-NQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSEL 405 (988)
Q Consensus 329 ~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 405 (988)
+++.|+|++|.+.+ .+|..+..+++|++|+|++ |++.+.+|..|.++++|++|+|++|++++.+|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 56677777777776 6777777888888888884 77877788888888888888888888877788888888888888
Q ss_pred EccccccccccccccccccccceeecCCCCCCccCchhhhhhc-ccccceecccccccCCCccccccccccceeecCCcc
Q 001974 406 LLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLT-YLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNN 484 (988)
Q Consensus 406 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~ 484 (988)
+|++|.+++.+|..|..+++|++|++++|+++|.+|..++.++ .+ +.|++++|++++.+|..+..+. |+.|+|++|+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 8888888877888888888888888888888878888888877 55 7888888888888888888876 8888888888
Q ss_pred cccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCCC
Q 001974 485 LSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPTK 563 (988)
Q Consensus 485 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~~ 563 (988)
+++.+|..|+.+++|+.|+|++|.+++.+|. +..+++|+.|||++|++++.+|.. ..+++|++|+|++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8888888888888888888888888866665 777888888888888888777765 66778888888888888888887
Q ss_pred cccCcccccccccccccCCCCCC
Q 001974 564 GVFANISRISVAGFNRLCGGIPE 586 (988)
Q Consensus 564 ~~~~~~~~~~~~~n~~lcg~~~~ 586 (988)
+.+..+..+.+.+|+++||.|+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSS
T ss_pred ccccccChHHhcCCCCccCCCCC
Confidence 77788888888999999997653
No 285
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=339.68 Aligned_cols=252 Identities=22% Similarity=0.295 Sum_probs=183.2
Q ss_pred hhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCCc
Q 001974 661 ATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 661 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~ 739 (988)
...+|.+.+.||+|+||+||.... .+++.||||++..... ..+.+|+++++++ +||||+++++++. ++..
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~-~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~-----~~~~ 92 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEK-----DRQF 92 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEE-SSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEE-----ETTE
T ss_pred ccEEEecCCeeecCcCEEEEEEEE-eCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCE
Confidence 345688899999999999664433 4889999999864332 3456899999999 8999999999854 4478
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC-----
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN----- 814 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~----- 814 (988)
.++||||+ +|+|.+++..... ...+.+++.++.||+.||+|||+. +|+||||||+||+++.
T Consensus 93 ~~lv~E~~-~g~L~~~l~~~~~----------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~ 158 (432)
T 3p23_A 93 QYIAIELC-AATLQEYVEQKDF----------AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHG 158 (432)
T ss_dssp EEEEEECC-SEEHHHHHHSSSC----------CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTT
T ss_pred EEEEEECC-CCCHHHHHHhcCC----------CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCC
Confidence 89999999 5799999976542 234445678999999999999999 9999999999999953
Q ss_pred CCcEEEeeecccccccccccccceeccccccccccccCcccC---CCCCCCccchHHHHHHHHHHHh-CCCCCCccccCC
Q 001974 815 DMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL---GSEVSTNGDIYSYGILLLEMVT-GKKPTDVMFEGD 890 (988)
Q Consensus 815 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~ 890 (988)
...+||+|||+|+........ ........||+.|+|||++. ...++.++|||||||++|||++ |..||......
T Consensus 159 ~~~~kL~DFG~a~~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~- 236 (432)
T 3p23_A 159 KIKAMISDFGLCKKLAVGRHS-FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR- 236 (432)
T ss_dssp BCCEEECCTTEEECC-------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH-
T ss_pred ceeEEEecccceeeccCCCcc-eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH-
Confidence 336889999999876543211 11223456999999999987 4567889999999999999999 99998532111
Q ss_pred cchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHH
Q 001974 891 LNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVH 966 (988)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 966 (988)
............ ........+..+.+++.+||+.||++|||++|+++
T Consensus 237 -----~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 237 -----QANILLGACSLD------------------------CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp -----HHHHHTTCCCCT------------------------TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -----HHHHHhccCCcc------------------------ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 000000000000 00011134456789999999999999999999984
No 286
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=3.7e-35 Score=334.42 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=188.4
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---chhHHHHHHHHHHHhcCC-CCceEE------------
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---GASKSFLAECKALKNIRH-RNLVKV------------ 725 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~niv~~------------ 725 (988)
...|...+.||+|+||+||+|++..+|+.||||+++.... ...+.+.+|+.+++.++| +|...+
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 3457778899999999999999998999999999873322 235789999999999977 322111
Q ss_pred ---------EeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC
Q 001974 726 ---------ITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC 796 (988)
Q Consensus 726 ---------~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~ 796 (988)
..+............+++|+++ +++|.+++...... ......+++..++.++.||+.||+|||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~----~~~~~~l~~~~~~~i~~qi~~aL~~LH~~- 230 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH----SSTHKSLVHHARLQLTLQVIRLLASLHHY- 230 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHH----TTTSHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcc----cccCCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence 1111100000123467778876 79999988411000 00014688889999999999999999998
Q ss_pred CCCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCccc----------CCCCCCCccch
Q 001974 797 QEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYG----------LGSEVSTNGDI 866 (988)
Q Consensus 797 ~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~sDv 866 (988)
+||||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++||
T Consensus 231 --~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dv 300 (413)
T 3dzo_A 231 --GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDT 300 (413)
T ss_dssp --TEECSCCCGGGEEECTTCCEEECCGGGCEETTEE-------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHH
T ss_pred --CcccCCcccceEEEecCCeEEEEeccceeecCCc-------cccCCC-CceeCchhhhccccccccccCcCCCchhhH
Confidence 9999999999999999999999999999864432 223457 999999998 66678899999
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCcchHHHHHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHH
Q 001974 867 YSYGILLLEMVTGKKPTDVMFEGDLNLHNYARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRI 946 (988)
Q Consensus 867 wslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 946 (988)
|||||++|||++|+.||......+ ..... ......+++++.++
T Consensus 301 wSlGvil~elltg~~Pf~~~~~~~-----------------~~~~~--------------------~~~~~~~~~~~~~l 343 (413)
T 3dzo_A 301 WTLGLAIYWIWCADLPNTDDAALG-----------------GSEWI--------------------FRSCKNIPQPVRAL 343 (413)
T ss_dssp HHHHHHHHHHHHSSCCCCTTGGGS-----------------CSGGG--------------------GSSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCcchhh-----------------hHHHH--------------------HhhcccCCHHHHHH
Confidence 999999999999999986421110 00000 11122567889999
Q ss_pred hhcccCcCCCCCCCHHHHHHH--HHHHHHH
Q 001974 947 GVACSVESPQDRMSITNVVHE--LQSVKNA 974 (988)
Q Consensus 947 i~~cl~~dP~~RPs~~evl~~--L~~i~~~ 974 (988)
+.+||+.||++|||+.|+++. ++++.+.
T Consensus 344 i~~~l~~dP~~Rpt~~~~l~~~~~~~~~~~ 373 (413)
T 3dzo_A 344 LEGFLRYPKEDRLLPLQAMETPEYEQLRTE 373 (413)
T ss_dssp HHHHTCSSGGGSCCHHHHTTSHHHHHHHHH
T ss_pred HHHHccCChhhCcCHHHHHhCHHHHHHHHH
Confidence 999999999999999998653 4444333
No 287
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=4.9e-35 Score=315.92 Aligned_cols=235 Identities=13% Similarity=0.075 Sum_probs=185.2
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc---chhHHHHHHHHHHHhcCCCCceEEEeecccccccCCC
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH---GASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 738 (988)
.++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+.+|+.++++++||||+++++++.. ++
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~~ 104 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-----RA 104 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TT
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE-----CC
Confidence 3679999999999999999999998899999999975432 234678999999999999999999999643 47
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..++||||+++++|.+++... ....++.+|+.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 105 ~~~lv~e~~~g~~L~~~l~~~-------------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~ 168 (286)
T 3uqc_A 105 GGLVVAEWIRGGSLQEVADTS-------------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDV 168 (286)
T ss_dssp EEEEEEECCCEEEHHHHHTTC-------------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCE
T ss_pred cEEEEEEecCCCCHHHHHhcC-------------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCE
Confidence 899999999999999999532 24556888999999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHH
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYAR 898 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 898 (988)
||+++| |++ .++.++|||||||++|||+||+.||......+..
T Consensus 169 kl~~~~------------------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~------ 211 (286)
T 3uqc_A 169 VLAYPA------------------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL------ 211 (286)
T ss_dssp EECSCC------------------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS------
T ss_pred EEEecc------------------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh------
Confidence 998443 333 3688999999999999999999998743221100
Q ss_pred HHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHHHHHHHHHh
Q 001974 899 TALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHELQSVKNAL 975 (988)
Q Consensus 899 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 975 (988)
. ............ .......+++++.+++.+||+.||++| |++|+++.|+++....
T Consensus 212 -------~-~~~~~~~~~~~~------------~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 212 -------A-PAERDTAGQPIE------------PADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp -------E-ECCBCTTSCBCC------------HHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred -------H-HHHHHhccCCCC------------hhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 0 000000000000 001123577889999999999999999 9999999999987543
No 288
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.7e-35 Score=352.64 Aligned_cols=249 Identities=21% Similarity=0.285 Sum_probs=196.6
Q ss_pred hCCCCCCceeccccceeEEEEEECC-CCeEEEEEEeeccc-cchhHHHHHHHHHHHhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQ-DGTIVAIKVFNLQR-HGASKSFLAECKALKNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|++.+.||+|+||.||+|.+.. +|+.||||++.... ......+.+|++++++++||||+++++++..........
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 3689999999999999999999975 78999999986433 234467889999999999999999999976542222222
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEE
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAH 819 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 819 (988)
.++||||+++++|.+++.. .+++.+++.|+.||+.||+|||++ +||||||||+||+++.+ .+|
T Consensus 159 ~~lv~E~~~g~~L~~~~~~-------------~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~k 221 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ-------------KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLK 221 (681)
T ss_dssp EEEEEECCCCEECC----C-------------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEE
T ss_pred eEEEEEeCCCCcHHHHHhC-------------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEE
Confidence 6999999999999887643 488999999999999999999999 99999999999999985 999
Q ss_pred EeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHHHHH
Q 001974 820 VGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNYART 899 (988)
Q Consensus 820 L~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 899 (988)
|+|||+++..... ....||+.|+|||++.+.. +.++|||||||++|||++|..||........
T Consensus 222 l~DFG~a~~~~~~--------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~-------- 284 (681)
T 2pzi_A 222 LIDLGAVSRINSF--------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL-------- 284 (681)
T ss_dssp ECCCTTCEETTCC--------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC--------
T ss_pred EEecccchhcccC--------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc--------
Confidence 9999999865432 2245899999999987654 8899999999999999999988763211100
Q ss_pred HHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCC-CHHHHHHHHHHHHHHh
Q 001974 900 ALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRM-SITNVVHELQSVKNAL 975 (988)
Q Consensus 900 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~i~~~~ 975 (988)
.... .....++.+.+++.+||+.||++|| +++++...+..+..+.
T Consensus 285 --------------~~~~-----------------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~~ 330 (681)
T 2pzi_A 285 --------------PEDD-----------------PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREV 330 (681)
T ss_dssp --------------CTTC-----------------HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHHH
T ss_pred --------------cccc-----------------cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHHh
Confidence 0000 0012345688999999999999999 5667777787775544
No 289
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1.9e-34 Score=314.57 Aligned_cols=237 Identities=20% Similarity=0.313 Sum_probs=182.4
Q ss_pred hCCCCCC-ceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHH-HhcCCCCceEEEeecccccccCCCc
Q 001974 662 TDGFSST-HLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKAL-KNIRHRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 662 ~~~y~~~-~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~~~~~~~~~~~~~~ 739 (988)
.++|.+. +.||+|+||.||+|.+..+++.||+|+++. ...+.+|+.++ +..+||||+++++++... ...+..
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 89 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 89 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCce
Confidence 3567776 789999999999999998999999999853 25677888888 555999999999987542 233577
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC---CC
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN---DM 816 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~---~~ 816 (988)
.++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~~---------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~ 157 (299)
T 3m2w_A 90 LLIVMECLDGGELFSRIQDRGD---------QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNA 157 (299)
T ss_dssp EEEEECCCCSCBHHHHHHHCTT---------CCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTC
T ss_pred EEEEEeecCCCcHHHHHHhccC---------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCC
Confidence 8999999999999999975432 2589999999999999999999999 9999999999999998 78
Q ss_pred cEEEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccCCcchHHH
Q 001974 817 IAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEGDLNLHNY 896 (988)
Q Consensus 817 ~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 896 (988)
.+||+|||++.... +..++.++||||+||++|||++|+.||.......
T Consensus 158 ~~kl~Dfg~a~~~~--------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~------ 205 (299)
T 3m2w_A 158 ILKLTDFGFAKETT--------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA------ 205 (299)
T ss_dssp CEEECCCTTCEECT--------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-----------
T ss_pred cEEEeccccccccc--------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh------
Confidence 99999999986422 2346789999999999999999999986421110
Q ss_pred HHHHHhhhhhhhhccccccCcchhhhhhHHHHhhhhhccccchhHHHHHHhhcccCcCCCCCCCHHHHHHH
Q 001974 897 ARTALLDHVIDIVDPILINDVEDWDATNKQRLRQAKINGKIECPISMVRIGVACSVESPQDRMSITNVVHE 967 (988)
Q Consensus 897 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 967 (988)
....... ....... .+. ......++.++.+++.+||+.||++|||++|+++.
T Consensus 206 ----~~~~~~~---~~~~~~~-~~~-----------~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 206 ----ISPGMKT---RIRMGQY-EFP-----------NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp ------CCSCC---SSCTTCC-SSC-----------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ----hhHHHHH---HHhhccc-cCC-----------chhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 0000000 0000000 000 00012467889999999999999999999999873
No 290
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.7e-33 Score=310.04 Aligned_cols=306 Identities=21% Similarity=0.307 Sum_probs=175.9
Q ss_pred ccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCcccc
Q 001974 197 YNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLS 276 (988)
Q Consensus 197 ~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~ 276 (988)
..+++|+.|++++|.+. .+|. +..+++|++|++++|++++..+ +..+++|++|++++|.++.. ..|..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 34444455555555444 3332 2234444444444444443222 44444444444444444432 1344555555
Q ss_pred EEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceE
Q 001974 277 YFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYR 356 (988)
Q Consensus 277 ~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 356 (988)
+|++++|.++..+. +..+++|++|++++|. .... +..+..+++|+.
T Consensus 114 ~L~l~~n~i~~~~~--------~~~l~~L~~L~l~~n~-------------------------~~~~-~~~~~~l~~L~~ 159 (347)
T 4fmz_A 114 ELYLNEDNISDISP--------LANLTKMYSLNLGANH-------------------------NLSD-LSPLSNMTGLNY 159 (347)
T ss_dssp EEECTTSCCCCCGG--------GTTCTTCCEEECTTCT-------------------------TCCC-CGGGTTCTTCCE
T ss_pred EEECcCCcccCchh--------hccCCceeEEECCCCC-------------------------Cccc-ccchhhCCCCcE
Confidence 55555555443211 2334444444444443 3222 223555666666
Q ss_pred EEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCC
Q 001974 357 LGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGL 436 (988)
Q Consensus 357 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 436 (988)
|++++|.+.+..+ +..+++|+.|++++|++++. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence 6666666653322 55666666666666666632 22 5666666666666666664433 66666666666666666
Q ss_pred CccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCcc
Q 001974 437 NGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSS 516 (988)
Q Consensus 437 ~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 516 (988)
+ .++. +..++.+ ++|++++|.+++ + ..+..+++|+.|++++|++++ + +.+..+++|+.|+|++|.+++..|..
T Consensus 234 ~-~~~~-~~~l~~L-~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 234 T-DLSP-LANLSQL-TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp C-CCGG-GTTCTTC-CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred C-CCcc-hhcCCCC-CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 6 3443 5566666 666777776663 2 346677777778888877774 3 35777778888888888887777777
Q ss_pred ccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCc
Q 001974 517 LSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLE 557 (988)
Q Consensus 517 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~ 557 (988)
+..+++|+.|+|++|++++.+| ...+++|++|++++|.++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 7778888888888888877766 666777888888888764
No 291
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.1e-33 Score=311.23 Aligned_cols=308 Identities=24% Similarity=0.353 Sum_probs=204.6
Q ss_pred cccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccc
Q 001974 51 YIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKL 130 (988)
Q Consensus 51 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 130 (988)
.+..+++|++|++++|.++. +| .+..+++|++|++++|++++ +|. |..+++|++|+|++|+++. + .+|.++++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 34567778888888888873 44 37778888888888888874 333 7788888888888888874 3 357788888
Q ss_pred cccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccC
Q 001974 131 KQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRN 210 (988)
Q Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 210 (988)
++|++++|.+++. +. +..+++|++|++++|..... +..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 8888888887743 33 77788888888888865533 3347778888888888888774433 677777777777777
Q ss_pred CCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCC
Q 001974 211 QFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGES 290 (988)
Q Consensus 211 ~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 290 (988)
.+. .++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.++.++
T Consensus 188 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~- 259 (347)
T 4fmz_A 188 QIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN- 259 (347)
T ss_dssp CCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-
T ss_pred ccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-
Confidence 776 4443 4456666666666666664433 5556666666666666655443 555556666666665554321
Q ss_pred CchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCc
Q 001974 291 DEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPK 370 (988)
Q Consensus 291 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 370 (988)
.+..+++ |+.|++++|++++. ..+..+++|+.|++++|++++..|.
T Consensus 260 -------~~~~l~~-------------------------L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 260 -------AVKDLTK-------------------------LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp -------GGTTCTT-------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred -------hHhcCCC-------------------------cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 2334444 55555555555432 3466667777777777777766667
Q ss_pred ccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccc
Q 001974 371 EMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLS 413 (988)
Q Consensus 371 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 413 (988)
.+..+++|+.|+|++|++++..| +..+++|+.|++++|.|+
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777777777777775544 677777777777777765
No 292
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.3e-32 Score=304.67 Aligned_cols=293 Identities=18% Similarity=0.201 Sum_probs=158.9
Q ss_pred CCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccccccccc
Q 001974 58 LREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 58 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 137 (988)
++.++++++.++ .+|..+ .++|++|+|++|.+++..|..|+.+++|++|+|++|+|++..|.+|.++++|++|+|++
T Consensus 35 l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444444444444 333333 13445555555555444444455555555555555555444444555555555555555
Q ss_pred ccccCCCCCcccCCCccceeeccccccCCCCCccccCccccccccccccccc--CccchhhccccCccEEEeccCCCCCC
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLS--GIIPPSIYNLSLLANFSVPRNQFHGS 215 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~L~~N~i~~~ 215 (988)
|+++ .+|..+. ++|++|++++|+++...+..|.++++|++|++++|.++ +..+..+..+ +|+.|++++|+++ .
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-G 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-S
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-c
Confidence 5554 3333322 45555555555555444445555555555555555554 2445555555 5666666666665 4
Q ss_pred CCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhh
Q 001974 216 LPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSF 295 (988)
Q Consensus 216 lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 295 (988)
+|..++ ++|+.|++++|++++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.++.++.
T Consensus 187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~----- 258 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA----- 258 (332)
T ss_dssp CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-----
T ss_pred cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-----
Confidence 555443 566677777777766666666666666777776666666666666666666666666666654332
Q ss_pred hcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCC--CccCcccC
Q 001974 296 MNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFT--GTIPKEMG 373 (988)
Q Consensus 296 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~ 373 (988)
.+..+++|++|++++|++++..+..+.... + ......|+.|++++|.+. +..|..|.
T Consensus 259 --~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-----------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 259 --GLPDLKLLQVVYLHTNNITKVGVNDFCPVG-----------------F--GVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp --TGGGCTTCCEEECCSSCCCBCCTTSSSCSS-----------------C--CSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred --hhhcCccCCEEECCCCCCCccChhHccccc-----------------c--ccccccccceEeecCcccccccCccccc
Confidence 234455555555555555522222221110 0 011356778888888776 56677788
Q ss_pred CCCccCeEeccccc
Q 001974 374 KLQNLEGMGLYDNQ 387 (988)
Q Consensus 374 ~l~~L~~L~L~~N~ 387 (988)
.+++|+.|+|++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 88888888888774
No 293
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.9e-32 Score=301.82 Aligned_cols=198 Identities=20% Similarity=0.274 Sum_probs=106.7
Q ss_pred CCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccccccccc
Q 001974 58 LREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 58 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 137 (988)
+++++++++.++ .+|..+. ++|++|+|++|.+++..+..|+.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 344444444444 2333321 3444444444444443333444444555555555544444444555555555555555
Q ss_pred ccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccC--ccchhhccccCccEEEeccCCCCCC
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSG--IIPPSIYNLSLLANFSVPRNQFHGS 215 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~L~~N~i~~~ 215 (988)
|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|.++. ..+..+.++++|++|++++|+++ .
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 5554 2333332 466666666666665555566667777777777777642 55667777777777777777777 5
Q ss_pred CCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcc
Q 001974 216 LPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKL 265 (988)
Q Consensus 216 lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~ 265 (988)
+|..++ ++|+.|++++|++++..|..+..+++|+.|++++|++++..
T Consensus 186 l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 186 IPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 665443 45566666666555544444444444444444444444333
No 294
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.8e-32 Score=302.10 Aligned_cols=288 Identities=21% Similarity=0.292 Sum_probs=189.3
Q ss_pred CccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEec
Q 001974 201 LLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNV 280 (988)
Q Consensus 201 ~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L 280 (988)
+++.+++++|.++ .+|..++ ++|+.|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5677777777776 6666553 46666677666666655666666666666666666666655555555555555555
Q ss_pred ccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEee
Q 001974 281 AYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMG 360 (988)
Q Consensus 281 ~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 360 (988)
++|.++. +|..+. ++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 110 ~~n~l~~-------------------------------l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVE-------------------------------IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCS-------------------------------CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCc-------------------------------cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 5555543 333322 356667777777665555567777778888888
Q ss_pred CccCC--CccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCc
Q 001974 361 GNQFT--GTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNG 438 (988)
Q Consensus 361 ~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 438 (988)
+|.++ +..|..+..+ +|+.|++++|++++ +|..+. ++|++|+|++|++++..+..|..+++|+.|++++|++++
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 88775 3556667766 77888888888774 555443 677777777777777666777777777777777777775
Q ss_pred cCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCccccc------CCCCcEEEecCcccc--
Q 001974 439 TIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGL------CSYLEEIYMRGNFFH-- 510 (988)
Q Consensus 439 ~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~-- 510 (988)
..+..+..++.| +.|++++|+++ .+|..+..+++|+.|++++|+|++..+..|.. ..+|+.|++++|.+.
T Consensus 232 ~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 232 IENGSLSFLPTL-RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp CCTTGGGGCTTC-CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred CChhHhhCCCCC-CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence 555566666666 67777777776 66666777777777777777777555555543 245677777777766
Q ss_pred ccCCccccCccccCeeecCCCc
Q 001974 511 GSIPSSLSSLRAVLAIDLSRNN 532 (988)
Q Consensus 511 ~~~p~~~~~l~~L~~L~ls~N~ 532 (988)
+..|..|..+++|+.|+|++|+
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 5566667777777777777664
No 295
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=8.9e-34 Score=314.78 Aligned_cols=196 Identities=21% Similarity=0.204 Sum_probs=161.0
Q ss_pred hCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccc--------cchhHHHHHHHHHHHhcC---------CCCceE
Q 001974 662 TDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR--------HGASKSFLAECKALKNIR---------HRNLVK 724 (988)
Q Consensus 662 ~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~ 724 (988)
.++|++.+.||+|+||+||+|++ +|+.||||+++... ....+.+.+|+.++++++ ||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 45688999999999999999998 78999999997542 223377899999999886 777777
Q ss_pred EEeecccc-------------------------cccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHH
Q 001974 725 VITSCSSI-------------------------DFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRI 779 (988)
Q Consensus 725 ~~~~~~~~-------------------------~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~ 779 (988)
+.+++... ++.+++..++||||+++|++.+.+.. ..+++.+++
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~------------~~~~~~~~~ 164 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT------------KLSSLATAK 164 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT------------TCCCHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh------------cCCCHHHHH
Confidence 76653210 01236789999999999977766643 257899999
Q ss_pred HHHHHHHHHHHHHH-cCCCCCeEeccCCCCCeeeCCCC--------------------cEEEeeecccccccccccccce
Q 001974 780 NIAIDVASAIDYLH-HHCQEPVLHCDLKPGNVLLDNDM--------------------IAHVGDFGLARVRQEVSNLTQS 838 (988)
Q Consensus 780 ~i~~~i~~~L~~LH-~~~~~~ivH~Dlkp~NIll~~~~--------------------~~kL~DfG~a~~~~~~~~~~~~ 838 (988)
.|+.||+.||+||| +. +||||||||+|||++.++ .+||+|||+|+.....
T Consensus 165 ~i~~qi~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------ 235 (336)
T 2vuw_A 165 SILHQLTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------ 235 (336)
T ss_dssp HHHHHHHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------
T ss_pred HHHHHHHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------
Confidence 99999999999999 88 999999999999999887 9999999999865432
Q ss_pred eccccccccccccCcccCCCCCCCccchHHHHHH-HHHHHhCCCCCC
Q 001974 839 CSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGIL-LLEMVTGKKPTD 884 (988)
Q Consensus 839 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~v-l~elltg~~p~~ 884 (988)
...||+.|+|||++.+.. +.++||||+|++ .+++++|..||.
T Consensus 236 ---~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 236 ---IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp ---EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred ---cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence 235899999999998766 889999998777 778889999964
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-31 Score=297.24 Aligned_cols=289 Identities=21% Similarity=0.267 Sum_probs=190.6
Q ss_pred CccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEec
Q 001974 201 LLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNV 280 (988)
Q Consensus 201 ~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L 280 (988)
+++.++++++.++ .+|..+. ++|+.|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4556666666665 5555443 45666666666666555556666666666666666666666666666666666666
Q ss_pred ccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEee
Q 001974 281 AYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMG 360 (988)
Q Consensus 281 ~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 360 (988)
++|.++.+ |..+. ++|++|++++|++++..+..+..+++|+.|+++
T Consensus 108 s~n~l~~l-------------------------------~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 108 SKNQLKEL-------------------------------PEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CSSCCSBC-------------------------------CSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCcCCcc-------------------------------Chhhc---ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 66655533 32222 256666666666665556667777777778887
Q ss_pred CccCCC--ccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCc
Q 001974 361 GNQFTG--TIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNG 438 (988)
Q Consensus 361 ~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 438 (988)
+|.++. ..+..+.++++|+.|++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|+.|++++|++++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 777753 55667777788888888888877 4555443 678888888888877777778888888888888888775
Q ss_pred cCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCccccc------CCCCcEEEecCccccc-
Q 001974 439 TIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGL------CSYLEEIYMRGNFFHG- 511 (988)
Q Consensus 439 ~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~- 511 (988)
..+..+..++.| +.|++++|+++ .+|..+..+++|++|++++|+|++..+..|.. ..+|+.|++++|.+..
T Consensus 231 ~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 231 VDNGSLANTPHL-RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp ECTTTGGGSTTC-CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred eChhhccCCCCC-CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 555566666776 77777777776 66767777777777777777777555555543 2566777777777653
Q ss_pred -cCCccccCccccCeeecCCCc
Q 001974 512 -SIPSSLSSLRAVLAIDLSRNN 532 (988)
Q Consensus 512 -~~p~~~~~l~~L~~L~ls~N~ 532 (988)
..|..|..+..|+.++|++|+
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC----
T ss_pred ccCccccccccceeEEEecccC
Confidence 455666667777777777764
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=7.3e-36 Score=347.52 Aligned_cols=384 Identities=16% Similarity=0.160 Sum_probs=193.9
Q ss_pred ccceeeccccccCCCCCc-cccCcccccccccccccccC----ccchhhccccCccEEEeccCCCCCCCCCcccccCC--
Q 001974 153 SLESISLAANAFGGNIPN-SLGQLKELKSLGLGANNLSG----IIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLP-- 225 (988)
Q Consensus 153 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~-- 225 (988)
+|++|+|++|+++..... .+..+++|++|+|++|+++. .++..+..+++|++|+|++|++.+..+..++..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 344444444444322111 13444445555555554442 22344444455555555555554222223333333
Q ss_pred --CCcceecccccccc----ccCcccccCCcccEEEeccccccCccccccc-----CCccccEEecccccCCCCCCCchh
Q 001974 226 --HLRLFQVHHNFFSG----SIPISLSNASKLEFIEALDNSFSGKLSVNFG-----GMKNLSYFNVAYNNLGSGESDEMS 294 (988)
Q Consensus 226 --~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~ 294 (988)
+|++|+|++|+++. .++..+..+++|+.|++++|.+++..+..+. ..++|++|++++|.++..... .
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~ 161 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--P 161 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--H
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--H
Confidence 46666666666553 3456666666777777777766544333322 244677777777766543221 1
Q ss_pred hhcccccCCCCcEEEeecccCCCCCCchhhhc----cccccEEEccCCccccC----CCccccCCCcceEEEeeCccCCC
Q 001974 295 FMNSLANCSNLRTLIFAANKLRGALPHSIANL----SDQLQNLIMTSNQLHGS----IPSGIGNLVGLYRLGMGGNQFTG 366 (988)
Q Consensus 295 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~----~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 366 (988)
....+..+++|++|++++|++++..+..+... .++|++|++++|.+++. ++..+..+++|+.|++++|++++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 22344556666777776666653333222221 12455555555555432 23334444455555555554442
Q ss_pred ccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccc----cccccccccccceeecCCCCCCccCch
Q 001974 367 TIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGV----IPSCLGSLKQLAILHLFENGLNGTIPE 442 (988)
Q Consensus 367 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~ 442 (988)
.....+ .+..+..+++|++|+|++|+++.. ++..+..+++|+.|++++|.+++..+.
T Consensus 242 ~~~~~l-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 242 VGMAEL-------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHH-------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHH-------------------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 211000 011122344555555555555432 344444555555555555555433333
Q ss_pred hhhhh-----cccccceecccccccCC----CccccccccccceeecCCcccccccCccccc-----CCCCcEEEecCcc
Q 001974 443 EIFNL-----TYLSNSLNLARNHLVGS----IPTKIGNLKYLRVFNVSSNNLSGEIPSQLGL-----CSYLEEIYMRGNF 508 (988)
Q Consensus 443 ~~~~l-----~~l~~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~ 508 (988)
.+... +.+ ++|++++|.+++. ++..+..+++|+.|||++|++++..+..+.. .++|++|+|++|.
T Consensus 303 ~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 303 LLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 33322 244 5566666655543 3445555667777777777776554444432 5577777777777
Q ss_pred ccc----cCCccccCccccCeeecCCCcccCcCccc------ccCCCCcEEeCCCCcCcc
Q 001974 509 FHG----SIPSSLSSLRAVLAIDLSRNNLSGLIPKF------LEDLSLEYLNLSFNDLEG 558 (988)
Q Consensus 509 l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~~------~~~~~L~~l~l~~N~l~~ 558 (988)
+++ .+|..+..+++|+.|||++|++++..... .....|+.|++.+|....
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 765 66666777777777777777776532111 112246777777766544
No 298
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=8.7e-33 Score=304.45 Aligned_cols=264 Identities=20% Similarity=0.252 Sum_probs=181.8
Q ss_pred ccCCccccCCC----CCCCCCceeeeeEEeC--------CCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccc
Q 001974 3 AHDPQGILNSW----NDSGHFCEWKGITCGL--------RHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQG 70 (988)
Q Consensus 3 ~~~~~~~~~~w----~~~~~~c~~~~v~c~~--------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 70 (988)
..||.+.+++| ...+++|.|.|++|.. ...+|+.|+|++|+++ .+|+.++.+++|++|+|++|+|+
T Consensus 40 ~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~- 117 (328)
T 4fcg_A 40 NADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117 (328)
T ss_dssp HHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-
T ss_pred cCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-
Confidence 46888999999 5678999999999952 3467888888888888 77777888888888888888888
Q ss_pred cCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccC
Q 001974 71 EIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGN 150 (988)
Q Consensus 71 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (988)
.+|..|+.+++|++|+|++|+++ .+|..|+.+++|++|+|++|++.+.+|..+... ..+..|.+
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~ 181 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---------------DASGEHQG 181 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEE
T ss_pred chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc---------------cchhhhcc
Confidence 77888888888888888888888 778888888888888888887777777765540 11122344
Q ss_pred CCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcce
Q 001974 151 LTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLF 230 (988)
Q Consensus 151 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L 230 (988)
+++|++|+|++|+++ .+|..|+++++|++|+|++|++++ +|..+..+++|++|+|++|.+.+.+|..+. .+++|+.|
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L 258 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRL 258 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCCCEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCCCEE
Confidence 555555555555555 445555555555555555555553 344455555555555555555545544332 55666666
Q ss_pred eccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCC
Q 001974 231 QVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGS 287 (988)
Q Consensus 231 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 287 (988)
+|++|.+.+.+|..+.++++|+.|++++|++.+.+|..+..+++|+.+++..|.+..
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 666666666666666666667777777777666777777777777777777665543
No 299
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=9.4e-32 Score=300.58 Aligned_cols=286 Identities=18% Similarity=0.173 Sum_probs=221.4
Q ss_pred CCCCCCCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCC
Q 001974 11 NSWNDSGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDN 90 (988)
Q Consensus 11 ~~w~~~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 90 (988)
..|....++|.|.++ | |+++++++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 21 ~~~~~~~~~C~~~~~-c----------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-C----------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86 (353)
T ss_dssp ------CCEECTTSE-E----------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cCCCccCCCCCCCeE-e----------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC
Confidence 345667778888776 6 45677777 5676655 58999999999999877779999999999999999
Q ss_pred CCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCC-CcccCCCccceeecccc-ccCCCC
Q 001974 91 DLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIP-PFIGNLTSLESISLAAN-AFGGNI 168 (988)
Q Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~ 168 (988)
++++..|..|+.+++|++|+|++|+|++..+..|.++++|++|+|++|++++..+ ..|.++++|++|++++| .++...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 9998888899999999999999999997777779999999999999999995444 48999999999999999 577667
Q ss_pred CccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccc--
Q 001974 169 PNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLS-- 246 (988)
Q Consensus 169 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-- 246 (988)
+..|.++++|++|++++|++++..|..+..+++|++|++++|++. .+|..++..+++|+.|++++|++++..+..+.
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccc
Confidence 888999999999999999999888999999999999999999997 78877777789999999999999876555433
Q ss_pred -cCCcccEEEeccccccC----cccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCC
Q 001974 247 -NASKLEFIEALDNSFSG----KLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRG 317 (988)
Q Consensus 247 -~l~~L~~L~l~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 317 (988)
....++.++++++.+.+ .+|..+..+++|+.|++++|+++.++.. .|..+++|++|++++|++.+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~------~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSCBCC
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH------HHhcCCCCCEEEeeCCCccC
Confidence 34456666666666554 2344455566666666666666544332 23445555555555555553
No 300
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1e-35 Score=346.39 Aligned_cols=359 Identities=16% Similarity=0.118 Sum_probs=194.7
Q ss_pred CcEEEEEcCCCCCccccccc-ccCCCCCCEEEcCCCcccc----cCCcccCCCCCCcEEECCCCCCCCcCCcccc-cCC-
Q 001974 32 RRVTVLNLRSKGLSGSLSPY-IGNLSFLREINLMNNSIQG----EIPREFGRLFRLEALFLSDNDLVGEIPANLS-YCS- 104 (988)
Q Consensus 32 ~~v~~l~l~~~~~~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~- 104 (988)
.+++.|||++++++...... +..+++|++|+|++|+++. .++..+..+++|++|+|++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888876544433 6677888888888888774 3456677778888888888887754443332 344
Q ss_pred ---CCceeecCcccccC----CCcccccCcccccccccccccccCCCCCccc-----CCCccceeeccccccCCCC----
Q 001974 105 ---RLTILFLGRNKLMG----SIPFEFFSLYKLKQLAMQRNNLTGGIPPFIG-----NLTSLESISLAANAFGGNI---- 168 (988)
Q Consensus 105 ---~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~---- 168 (988)
+|++|+|++|+|+. .++..|..+++|++|+|++|.+++..+..+. ..++|++|++++|+++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777763 3466677777777777777776533222221 2345666666666665422
Q ss_pred CccccCcccccccccccccccCccchhhcc-----ccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCc
Q 001974 169 PNSLGQLKELKSLGLGANNLSGIIPPSIYN-----LSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPI 243 (988)
Q Consensus 169 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-----l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~ 243 (988)
+..+..+++|++|+|++|.++...+..+.. .++|++|++++|.+++.... .++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---------------------~l~~ 221 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---------------------DLCG 221 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH---------------------HHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH---------------------HHHH
Confidence 334445556666666666655433333321 33455555555544411000 1234
Q ss_pred ccccCCcccEEEeccccccCcc-----cccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCC
Q 001974 244 SLSNASKLEFIEALDNSFSGKL-----SVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGA 318 (988)
Q Consensus 244 ~l~~l~~L~~L~l~~N~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 318 (988)
.+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++..... ..+..+..+++|++|++++|++++.
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchH
Confidence 4445555555555555554332 22223456666666666666532111 1223445566666666666666533
Q ss_pred CCchhhhc----cccccEEEccCCccccC----CCccccCCCcceEEEeeCccCCCccCcccCC-----CCccCeEeccc
Q 001974 319 LPHSIANL----SDQLQNLIMTSNQLHGS----IPSGIGNLVGLYRLGMGGNQFTGTIPKEMGK-----LQNLEGMGLYD 385 (988)
Q Consensus 319 ~p~~~~~~----~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~ 385 (988)
.+..+... .++|++|++++|.+++. ++..+..+++|+.|++++|++++..+..+.. .++|+.|+|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 33333322 12455555555555533 2344445556666666666555433332221 34555555555
Q ss_pred ccCCC----CCCCCCCCCCCCCEEEccccccc
Q 001974 386 NQLSG----EIPSSLGNLSILSELLLNNNSLS 413 (988)
Q Consensus 386 N~l~~----~~p~~~~~l~~L~~L~L~~N~l~ 413 (988)
|++++ .+|..+..+++|++|+|++|+++
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 55543 34444444555555555555554
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.2e-30 Score=283.46 Aligned_cols=254 Identities=22% Similarity=0.271 Sum_probs=194.6
Q ss_pred CCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCc
Q 001974 16 SGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGE 95 (988)
Q Consensus 16 ~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 95 (988)
..+.|.|.+++|. +++++ .+|..+. ++|++|+|++|+|+...+..|.++++|++|+|++|+++..
T Consensus 3 ~~C~C~~~~l~c~------------~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 3 SRCSCSGTEIRCN------------SKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp TTCEEETTEEECC------------SSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred CCCeeCCCEEEcC------------CCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc
Confidence 4567888888886 34455 4555443 6899999999999965556689999999999999999833
Q ss_pred --CCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCC-CcccCCCccceeeccccccCCCCCccc
Q 001974 96 --IPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIP-PFIGNLTSLESISLAANAFGGNIPNSL 172 (988)
Q Consensus 96 --~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 172 (988)
.|..+..+++|++|+|++|.++ .+|..|.++++|++|++++|++++..+ ..|..+++|++|++++|.+.+..+..|
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 3677778999999999999998 677778999999999999999986554 578899999999999999988888888
Q ss_pred cCcccccccccccccccC-ccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcc
Q 001974 173 GQLKELKSLGLGANNLSG-IIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKL 251 (988)
Q Consensus 173 ~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 251 (988)
.++++|++|+|++|.+++ ..|..+..+++|++|++++|+++ .++...+..+++|+.|+|++|++++..+..+..+++|
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 999999999999999886 57778888888888888888887 4443444466777777777777766655566666666
Q ss_pred cEEEeccccccCcccccccCCc-cccEEecccccCC
Q 001974 252 EFIEALDNSFSGKLSVNFGGMK-NLSYFNVAYNNLG 286 (988)
Q Consensus 252 ~~L~l~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~ 286 (988)
+.|++++|++.+..+..+..++ +|++|++++|.++
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 6666666666666666665553 5666666666554
No 302
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.8e-29 Score=298.67 Aligned_cols=298 Identities=25% Similarity=0.301 Sum_probs=160.1
Q ss_pred ccCCccccCCCCCCCCCceeeeeEEeC------CCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCccc
Q 001974 3 AHDPQGILNSWNDSGHFCEWKGITCGL------RHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREF 76 (988)
Q Consensus 3 ~~~~~~~~~~w~~~~~~c~~~~v~c~~------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 76 (988)
..|....+++|..+++||.|.+..|.. ....++.|++++|+++ .+|..+. ++|++|+|++|+|+ .+|.
T Consensus 5 ~~~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-- 78 (622)
T 3g06_A 5 PAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-- 78 (622)
T ss_dssp -----CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--
T ss_pred HHHHHHHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--
Confidence 356778899999889999996642211 1234666777777776 5555554 56677777777666 3443
Q ss_pred CCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccce
Q 001974 77 GRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLES 156 (988)
Q Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (988)
.+++|++|+|++|+|+ .+|. .+++|++|+|++|+|++ +|. .+++|++|++++|+++. +|
T Consensus 79 -~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp----------- 137 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LP----------- 137 (622)
T ss_dssp -CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CC-----------
T ss_pred -cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CC-----------
Confidence 3566666666666666 3443 44556666666665553 222 33444455555554442 22
Q ss_pred eeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccc
Q 001974 157 ISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNF 236 (988)
Q Consensus 157 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~ 236 (988)
.. +++|++|+|++|++++ +|. .+++|+.|++++|+++ .+| ..+++|+.|++++|+
T Consensus 138 -------------~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 138 -------------VL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQ 192 (622)
T ss_dssp -------------CC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSC
T ss_pred -------------CC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCC
Confidence 21 2455555555555553 222 2345556666666655 333 112233333333333
Q ss_pred cccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCC
Q 001974 237 FSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLR 316 (988)
Q Consensus 237 l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~ 316 (988)
++ .++.. .++
T Consensus 193 l~------------------------------------------------~l~~~----------~~~------------ 202 (622)
T 3g06_A 193 LA------------------------------------------------SLPTL----------PSE------------ 202 (622)
T ss_dssp CS------------------------------------------------CCCCC----------CTT------------
T ss_pred CC------------------------------------------------CCCCc----------cch------------
Confidence 22 11100 012
Q ss_pred CCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCC
Q 001974 317 GALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSL 396 (988)
Q Consensus 317 ~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 396 (988)
|+.|++++|.++ .+|.. +++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|.
T Consensus 203 -------------L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~-- 258 (622)
T 3g06_A 203 -------------LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM-- 258 (622)
T ss_dssp -------------CCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--
T ss_pred -------------hhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--
Confidence 222233333322 12211 2455666666666653 34 33456777777777776 3444
Q ss_pred CCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhc
Q 001974 397 GNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLT 448 (988)
Q Consensus 397 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 448 (988)
.+++|+.|+|++|+|+ .+|..|..+++|+.|+|++|.+++.+|..+..++
T Consensus 259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp -CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred -ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4567777777777777 5577777777888888888887776666665554
No 303
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.6e-29 Score=276.53 Aligned_cols=250 Identities=20% Similarity=0.212 Sum_probs=193.2
Q ss_pred cEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCc--cCcccCCCCccCeEec
Q 001974 306 RTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGT--IPKEMGKLQNLEGMGL 383 (988)
Q Consensus 306 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L 383 (988)
+.++++++.++ .+|..+. +.|++|++++|+++...+..|..+++|+.|+|++|+++.. .+..+..+++|++|+|
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45666666666 5555443 3677788888877754445567888888888888887732 2566667788888888
Q ss_pred ccccCCCCCCCCCCCCCCCCEEEccccccccccc-cccccccccceeecCCCCCCccCchhhhhhcccccceeccccccc
Q 001974 384 YDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIP-SCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLV 462 (988)
Q Consensus 384 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~ 462 (988)
++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.+..|..+..++.| ++|++++|.++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccc
Confidence 888887 466667788888888888888876554 567788888888888888876677777777777 78888888887
Q ss_pred C-CCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-
Q 001974 463 G-SIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF- 540 (988)
Q Consensus 463 ~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~- 540 (988)
+ .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|||++|++++.+|..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 6 57788888888888888888888777888888888889999988888777778888888899999999888888765
Q ss_pred ccCC-CCcEEeCCCCcCcccCC
Q 001974 541 LEDL-SLEYLNLSFNDLEGEVP 561 (988)
Q Consensus 541 ~~~~-~L~~l~l~~N~l~~~~p 561 (988)
..++ +|++|+|++|.+++..+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGG
T ss_pred HhhhccCCEEEccCCCeecccC
Confidence 5554 78899999998887654
No 304
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.8e-29 Score=287.72 Aligned_cols=247 Identities=21% Similarity=0.197 Sum_probs=169.8
Q ss_pred CCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccccccccc
Q 001974 58 LREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 58 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 137 (988)
.+.++.+++.++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666666 4554442 4666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccCCCCCcccCCCccceeeccccccCCCCCccccCccccccccccc-ccccCccchhhccccCccEEEeccCCCCCCC
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGA-NNLSGIIPPSIYNLSLLANFSVPRNQFHGSL 216 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~l 216 (988)
|++++..+..|.++++|++|+|++|+++...+..|.++++|++|+|++ |.+..+.+..|.++++|++|+|++|+++ .+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc
Confidence 666655555566666666666666666655555666667777777766 4454444456667777777777777776 45
Q ss_pred CCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhh
Q 001974 217 PPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFM 296 (988)
Q Consensus 217 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 296 (988)
|. +..+++|+.|+|++|++++..|..|.++++|+.|++++|++.+..+..|.++++|+.|+|++|+++.++..
T Consensus 212 ~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----- 284 (452)
T 3zyi_A 212 PN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD----- 284 (452)
T ss_dssp CC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----
T ss_pred cc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH-----
Confidence 53 34677777777777777777777788888888888888888877777788888888888888888766654
Q ss_pred cccccCCCCcEEEeecccCC
Q 001974 297 NSLANCSNLRTLIFAANKLR 316 (988)
Q Consensus 297 ~~l~~l~~L~~L~Ls~N~l~ 316 (988)
.+..+++|++|+|++|.+.
T Consensus 285 -~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 -LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -SSTTCTTCCEEECCSSCEE
T ss_pred -HhccccCCCEEEccCCCcC
Confidence 4566778888888888776
No 305
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.5e-32 Score=323.80 Aligned_cols=450 Identities=14% Similarity=0.108 Sum_probs=250.2
Q ss_pred CceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcc---cccCCcccC------------CCCCCc
Q 001974 19 FCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSI---QGEIPREFG------------RLFRLE 83 (988)
Q Consensus 19 ~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l---~~~~p~~~~------------~l~~L~ 83 (988)
|++|.++.+.. ..+ +.+.. .....++..+..+++|++|+|+++.. .+.+|..++ .+++|+
T Consensus 41 ck~W~~~~~~~-~~~---l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSET-REH---VTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHH-CCE---EEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhcc-ccE---EEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 45798885432 122 22322 23334455667889999999988643 134444444 678899
Q ss_pred EEECCCCCCCCcCCcccccC--CCCceeecCccc-ccC-CCcccccCcccccccccccccccCC----CCCcccCCCccc
Q 001974 84 ALFLSDNDLVGEIPANLSYC--SRLTILFLGRNK-LMG-SIPFEFFSLYKLKQLAMQRNNLTGG----IPPFIGNLTSLE 155 (988)
Q Consensus 84 ~L~Ls~n~l~~~~p~~~~~l--~~L~~L~L~~N~-i~~-~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~ 155 (988)
+|+|++|.+++..+..++.. .+|++|+|++|. ++. .++..+.++++|++|+|++|.+++. ++..+..+++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 99999998887777767664 459999998886 221 1122234678899999999988754 333456778899
Q ss_pred eeeccccccCCC----CCccccCcccccccccccccccCccchhhccccCccEEEeccCCCC---CCCCCcccccCCCCc
Q 001974 156 SISLAANAFGGN----IPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFH---GSLPPSLGLTLPHLR 228 (988)
Q Consensus 156 ~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~---~~lp~~~~~~l~~L~ 228 (988)
+|++++|.+++. ++..+.++++|++|+|++|.+.+ ++..+..+++|++|+++.+... +..+.. ...+++|+
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~ 273 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLC 273 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCC
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH-hhcccccc
Confidence 999998888733 34445678889999999888884 6788888888888888753322 011111 12445566
Q ss_pred ceeccccccccccCcccccCCcccEEEeccccccCccc-ccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcE
Q 001974 229 LFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLS-VNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRT 307 (988)
Q Consensus 229 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~ 307 (988)
.|+++++.. ..+|..+..+++|+.|++++|.+++... ..+..+++|+.|+++ +.+... ........+++|++
T Consensus 274 ~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-----~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR-----GLEVLAQYCKQLKR 346 (592)
T ss_dssp EEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH-----HHHHHHHHCTTCCE
T ss_pred ccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH-----HHHHHHHhCCCCCE
Confidence 666655422 2344555555566666666555443322 223455555555555 222211 11111233455555
Q ss_pred EEeec-----------ccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCC-C
Q 001974 308 LIFAA-----------NKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGK-L 375 (988)
Q Consensus 308 L~Ls~-----------N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l 375 (988)
|++++ |.+++.....+ ...+++|++|+++.|++++..+..+.. +
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l------------------------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIAL------------------------AQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHH------------------------HHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred EEeecCccccccccccCccCHHHHHHH------------------------HhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 55552 33331111111 223455555555555555444444433 5
Q ss_pred CccCeEecc----cccCCCC-----CCCCCCCCCCCCEEEcccc--ccccccccccc-cccccceeecCCCCCCc-cCch
Q 001974 376 QNLEGMGLY----DNQLSGE-----IPSSLGNLSILSELLLNNN--SLSGVIPSCLG-SLKQLAILHLFENGLNG-TIPE 442 (988)
Q Consensus 376 ~~L~~L~L~----~N~l~~~-----~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~-~l~~L~~L~l~~N~l~~-~~p~ 442 (988)
++|+.|+|+ .|++++. ++..+.++++|+.|+|++| .+++..+..+. .+++|+.|++++|++++ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 556666664 4445432 1122344566666666532 24433333333 25566666666666653 2333
Q ss_pred hhhhhcccccceecccccccCC-CccccccccccceeecCCcccccccCccc-ccCCCCcEEEecCc
Q 001974 443 EIFNLTYLSNSLNLARNHLVGS-IPTKIGNLKYLRVFNVSSNNLSGEIPSQL-GLCSYLEEIYMRGN 507 (988)
Q Consensus 443 ~~~~l~~l~~~L~ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~L~~N 507 (988)
.+.+++.| +.|++++|.+++. ++..+..+++|+.|+|++|++++.-...+ ..++.+....+..+
T Consensus 483 ~~~~~~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 483 FSRGCPNL-QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHTCCTTC-CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCccc-CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 34455555 6666666665433 23333456666666776666664422222 24455555444443
No 306
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.8e-30 Score=284.21 Aligned_cols=280 Identities=18% Similarity=0.193 Sum_probs=134.8
Q ss_pred CCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccc
Q 001974 57 FLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQ 136 (988)
Q Consensus 57 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 136 (988)
.....++++|+++ .+|..+. ++|++|+|++|++++..+..|..+++|++|+|++|+|++..|.+|.++++|++|+|+
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3344555555555 3444332 355555555555554333355555555555555555554444445555555555555
Q ss_pred cccccCCCCCcccCCCccceeeccccccCCCCC-ccccCcccccccccccc-cccCccchhhccccCccEEEeccCCCCC
Q 001974 137 RNNLTGGIPPFIGNLTSLESISLAANAFGGNIP-NSLGQLKELKSLGLGAN-NLSGIIPPSIYNLSLLANFSVPRNQFHG 214 (988)
Q Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~~N~i~~ 214 (988)
+|++++..+..|.++++|++|++++|+++...+ ..|.++++|++|++++| .++...+..+.++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l--------------- 173 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL--------------- 173 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC---------------
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC---------------
Confidence 554443222234444444444444444442222 23444444444444444 2332222233333
Q ss_pred CCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchh
Q 001974 215 SLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMS 294 (988)
Q Consensus 215 ~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 294 (988)
++|+.|++++|++++..|..+.++++|+.|++++|++.......+.
T Consensus 174 ----------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~------------------------ 219 (353)
T 2z80_A 174 ----------TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD------------------------ 219 (353)
T ss_dssp ----------CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH------------------------
T ss_pred ----------CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh------------------------
Confidence 3333333333333333333444444444444444444332222222
Q ss_pred hhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCC----ccCc
Q 001974 295 FMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTG----TIPK 370 (988)
Q Consensus 295 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~p~ 370 (988)
.+++|++|++++|++++..+..+.. ......++.+++++|.+.+ .+|.
T Consensus 220 ------~~~~L~~L~L~~n~l~~~~~~~l~~----------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 220 ------VTSSVECLELRDTDLDTFHFSELST----------------------GETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp ------HTTTEEEEEEESCBCTTCCCC----------------------------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred ------hcccccEEECCCCcccccccccccc----------------------ccccchhhccccccccccCcchhhhHH
Confidence 3445555555555554322221110 1122334555555555543 3566
Q ss_pred ccCCCCccCeEecccccCCCCCCCC-CCCCCCCCEEEccccccccccc
Q 001974 371 EMGKLQNLEGMGLYDNQLSGEIPSS-LGNLSILSELLLNNNSLSGVIP 417 (988)
Q Consensus 371 ~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p 417 (988)
.+..+++|+.|+|++|+++ .+|.. |.++++|++|+|++|.+.+..|
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7777888888888888888 44544 5788888888888888875443
No 307
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=271.00 Aligned_cols=226 Identities=20% Similarity=0.302 Sum_probs=154.2
Q ss_pred CCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeE
Q 001974 302 CSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGM 381 (988)
Q Consensus 302 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 381 (988)
.++++.|+|++|+++ .+|..+..+. +|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+.++++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 466777777777777 6666666643 6777777777777 67777777777777777777777 667777777777777
Q ss_pred ecccccCCCCCCCCCCC---------CCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhccccc
Q 001974 382 GLYDNQLSGEIPSSLGN---------LSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSN 452 (988)
Q Consensus 382 ~L~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~ 452 (988)
+|++|++.+.+|..+.. +++|++|+|++|+++ .+|..++.+++|+.|+|++|+++ .+|..+..++.| +
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L-~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-E 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC-C
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC-C
Confidence 77777777777776654 666666666666666 55666666666666666666666 455556666666 6
Q ss_pred ceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCc
Q 001974 453 SLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNN 532 (988)
Q Consensus 453 ~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 532 (988)
+|++++|.+.+.+|..++.+++|+.|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.++++.|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred cc
Q 001974 533 LS 534 (988)
Q Consensus 533 l~ 534 (988)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 44
No 308
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.1e-30 Score=286.21 Aligned_cols=268 Identities=14% Similarity=0.141 Sum_probs=174.1
Q ss_pred cCCCCCCCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCccc-ccCCcccC-------CCCC
Q 001974 10 LNSWNDSGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQ-GEIPREFG-------RLFR 81 (988)
Q Consensus 10 ~~~w~~~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~ 81 (988)
..+|.....|+.+..+........++.+++++|.+ .+|..+... |++|+|++|+++ ..+|..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 34555444555555444333344566677777777 566655544 777777777773 34555554 6777
Q ss_pred CcEEECCCCCCCCcCCccc--ccCCCCceeecCcccccCCCcccccCc-----ccccccccccccccCCCCCcccCCCcc
Q 001974 82 LEALFLSDNDLVGEIPANL--SYCSRLTILFLGRNKLMGSIPFEFFSL-----YKLKQLAMQRNNLTGGIPPFIGNLTSL 154 (988)
Q Consensus 82 L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (988)
|++|+|++|++++.+|..+ +.+++|++|+|++|++++. |..|.++ ++|++|+|++|++++..+..|+++++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 7777777777777777765 7777777777777777755 6666666 777777777777776666777777777
Q ss_pred ceeeccccccCCC--CCccc--cCcccccccccccccccC---ccchhhccccCccEEEeccCCCCCCCCCcccccCCCC
Q 001974 155 ESISLAANAFGGN--IPNSL--GQLKELKSLGLGANNLSG---IIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHL 227 (988)
Q Consensus 155 ~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~---~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L 227 (988)
++|+|++|++.+. .+..+ .++++|++|+|++|+|++ .....+.++++|++|++++|++++..|...+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 7777777776543 22333 677777777777777762 1223345667777777777777755554555556677
Q ss_pred cceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCC
Q 001974 228 RLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGS 287 (988)
Q Consensus 228 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 287 (988)
+.|+|++|+|+ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77777777776 4455444 5666666666666655 33 5666666666666666543
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.7e-30 Score=281.98 Aligned_cols=203 Identities=19% Similarity=0.184 Sum_probs=120.5
Q ss_pred CCCcceEEEeeCccCCCccCccc--CCCCccCeEecccccCCCCCCCCCCCC-----CCCCEEEcccccccccccccccc
Q 001974 350 NLVGLYRLGMGGNQFTGTIPKEM--GKLQNLEGMGLYDNQLSGEIPSSLGNL-----SILSELLLNNNSLSGVIPSCLGS 422 (988)
Q Consensus 350 ~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~ 422 (988)
.+++|++|+|++|++++.+|..+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++.+..|..|+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45555555555555555555544 5555555555555555544 5444444 55555555555555555555555
Q ss_pred ccccceeecCCCCCCcc--Cchhh--hhhcccccceecccccccC--CCc-cccccccccceeecCCcccccccC-cccc
Q 001974 423 LKQLAILHLFENGLNGT--IPEEI--FNLTYLSNSLNLARNHLVG--SIP-TKIGNLKYLRVFNVSSNNLSGEIP-SQLG 494 (988)
Q Consensus 423 l~~L~~L~l~~N~l~~~--~p~~~--~~l~~l~~~L~ls~N~l~~--~~p-~~~~~l~~L~~L~ls~N~l~~~~p-~~~~ 494 (988)
+++|+.|+|++|++.|. +|..+ ..++.| ++|++++|++++ .++ ..+..+++|+.|||++|++++..| ..+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 55555555555555543 22333 445555 556666665552 111 223455677777777777776554 4455
Q ss_pred cCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCcc
Q 001974 495 LCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEG 558 (988)
Q Consensus 495 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~ 558 (988)
.+++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |.+..+++|++|+|++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 5677777777777777 6666665 6777777777777776 446666677777777777765
No 310
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=281.23 Aligned_cols=254 Identities=22% Similarity=0.205 Sum_probs=164.9
Q ss_pred eeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccC
Q 001974 24 GITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYC 103 (988)
Q Consensus 24 ~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (988)
.+.|... ...++..+++++ .+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++
T Consensus 38 ~C~C~~~---~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 38 VCSCSNQ---FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp SSEECTT---SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred CCEeCCC---CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence 3556432 234566777777 5666554 678888888888887777888888888888888888887777788888
Q ss_pred CCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccc-cccCCCCCccccCcccccccc
Q 001974 104 SRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAA-NAFGGNIPNSLGQLKELKSLG 182 (988)
Q Consensus 104 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 182 (988)
++|++|+|++|+|+...+..|.++++|++|+|++|.++...+..|.++++|++|+|++ |.+....+..|.++++|++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 8888888888888866666788888888888888887766666777777777777777 444434444666677777777
Q ss_pred cccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEecccccc
Q 001974 183 LGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFS 262 (988)
Q Consensus 183 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~ 262 (988)
|++|+++. +| .+..+++|++|+|++|+++ +..|..|.++++|+.|++++|+++
T Consensus 192 L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 192 LAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-------------------------AIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CTTSCCSS-CC-CCTTCSSCCEEECTTSCCC-------------------------EECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCcCcc-cc-ccCCCcccCEEECCCCccC-------------------------ccChhhhccCccCCEEECCCCcee
Confidence 77776662 33 2455555555555555554 444444455555555555555555
Q ss_pred CcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCC
Q 001974 263 GKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLR 316 (988)
Q Consensus 263 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~ 316 (988)
+..+..|.++++|+.|+|++|+++.++.. .|..+++|+.|+|++|.+.
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHD------LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTT------TTSSCTTCCEEECCSSCEE
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChh------HhccccCCCEEEcCCCCcc
Confidence 55555555555555555555555544433 2344555555555555554
No 311
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=278.04 Aligned_cols=251 Identities=25% Similarity=0.281 Sum_probs=220.9
Q ss_pred CCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEec
Q 001974 304 NLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGL 383 (988)
Q Consensus 304 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 383 (988)
....++.+++.++ .+|..+. +.++.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3567788888887 7776554 47899999999999888899999999999999999999777889999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCch-hhhhhcccccceeccccccc
Q 001974 384 YDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPE-EIFNLTYLSNSLNLARNHLV 462 (988)
Q Consensus 384 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~l~~~L~ls~N~l~ 462 (988)
++|++++..+..|..+++|++|+|++|+|+...+..|..+++|+.|++++|+..+.++. .+.+++.| ++|+|++|+++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc
Confidence 99999977777899999999999999999988888999999999999999555446665 57788888 99999999998
Q ss_pred CCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-c
Q 001974 463 GSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-L 541 (988)
Q Consensus 463 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~ 541 (988)
.+| .+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|||++|+|++.++.. .
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 566 4888999999999999999888999999999999999999999999999999999999999999999988876 6
Q ss_pred cCCCCcEEeCCCCcCcccCC
Q 001974 542 EDLSLEYLNLSFNDLEGEVP 561 (988)
Q Consensus 542 ~~~~L~~l~l~~N~l~~~~p 561 (988)
.+.+|+.|+|++|.+.....
T Consensus 277 ~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCTTCCEEECCSSCEECSST
T ss_pred cccCCCEEEcCCCCccCCCC
Confidence 67789999999999876554
No 312
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.6e-28 Score=278.81 Aligned_cols=251 Identities=22% Similarity=0.244 Sum_probs=218.8
Q ss_pred CCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEec
Q 001974 304 NLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGL 383 (988)
Q Consensus 304 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 383 (988)
....++.+++.++ .+|..+. +.++.|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3567778888877 6776554 47999999999999888899999999999999999999888889999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCch-hhhhhcccccceeccccccc
Q 001974 384 YDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPE-EIFNLTYLSNSLNLARNHLV 462 (988)
Q Consensus 384 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~l~~~L~ls~N~l~ 462 (988)
++|++++..+..|.++++|++|+|++|+|++..+..|..+++|+.|++++|...+.+|. .+.+++.| ++|+|++|+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCccc
Confidence 99999977777799999999999999999988888899999999999999544446666 56778888 99999999998
Q ss_pred CCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-c
Q 001974 463 GSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-L 541 (988)
Q Consensus 463 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~ 541 (988)
+ +| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|||++|+|++.++.. .
T Consensus 210 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp S-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred c-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 4 44 5888999999999999999888999999999999999999999999999999999999999999999888876 5
Q ss_pred cCCCCcEEeCCCCcCcccCC
Q 001974 542 EDLSLEYLNLSFNDLEGEVP 561 (988)
Q Consensus 542 ~~~~L~~l~l~~N~l~~~~p 561 (988)
.+++|+.|+|++|.+.....
T Consensus 288 ~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCTTCCEEECCSSCEECSTT
T ss_pred cccCCCEEEccCCCcCCCCC
Confidence 67789999999999877654
No 313
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.5e-31 Score=315.54 Aligned_cols=397 Identities=14% Similarity=0.087 Sum_probs=245.1
Q ss_pred CCCccceeeccccccCCCCCccccCc--cccccccccccc-ccC-ccchhhccccCccEEEeccCCCCCCCCC---cccc
Q 001974 150 NLTSLESISLAANAFGGNIPNSLGQL--KELKSLGLGANN-LSG-IIPPSIYNLSLLANFSVPRNQFHGSLPP---SLGL 222 (988)
Q Consensus 150 ~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~-l~~-~~~~~l~~l~~L~~L~L~~N~i~~~lp~---~~~~ 222 (988)
.+++|++|+|++|.++...+..+..+ .+|++|+|++|. ++. .++.....+++|++|+|++|.+.+.-.. .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45555666666555544334444432 236666666554 110 1122223556666666666655432111 1233
Q ss_pred cCCCCcceeccccccc----cccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcc
Q 001974 223 TLPHLRLFQVHHNFFS----GSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNS 298 (988)
Q Consensus 223 ~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 298 (988)
.+++|+.|++++|.++ ..++..+.++++|+.|++++|.+.+ .+..+..+++|+.|+++........ ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHH
Confidence 4566666666666665 2233445566777777777777765 4456777777777777753222110 111234
Q ss_pred cccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCC-ccccCCCcceEEEeeCccCC-CccCcccCCCC
Q 001974 299 LANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIP-SGIGNLVGLYRLGMGGNQFT-GTIPKEMGKLQ 376 (988)
Q Consensus 299 l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~ 376 (988)
+..+++|+.|+++++... .+|..+... ++|++|++++|.+++... ..+..+++|+.|+++ |.+. +.++..+..++
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred hhccccccccCccccchh-HHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 566778888888775433 555555444 478888888888764433 335778888999888 4444 33444456678
Q ss_pred ccCeEeccc-----------ccCCCC-CCCCCCCCCCCCEEEcccccccccccccccc-ccccceeecC----CCCCCcc
Q 001974 377 NLEGMGLYD-----------NQLSGE-IPSSLGNLSILSELLLNNNSLSGVIPSCLGS-LKQLAILHLF----ENGLNGT 439 (988)
Q Consensus 377 ~L~~L~L~~-----------N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~l~----~N~l~~~ 439 (988)
+|++|+|++ |.+++. ++..+..+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 889999983 566532 1222345788888998888888776666665 8888888885 7778743
Q ss_pred -----Cchhhhhhcccccceecccc--cccCCCcccccc-ccccceeecCCccccc-ccCcccccCCCCcEEEecCcccc
Q 001974 440 -----IPEEIFNLTYLSNSLNLARN--HLVGSIPTKIGN-LKYLRVFNVSSNNLSG-EIPSQLGLCSYLEEIYMRGNFFH 510 (988)
Q Consensus 440 -----~p~~~~~l~~l~~~L~ls~N--~l~~~~p~~~~~-l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~ 510 (988)
++..+.+++.| +.|++++| .+++..+..+.. +++|+.|+|++|++++ .++..+..+++|++|+|++|.++
T Consensus 423 p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred hHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 44446667777 88888743 365555555543 7888999999988876 34555677888999999999887
Q ss_pred cc-CCccccCccccCeeecCCCcccCcCccc--ccCCCCcEEeCCCC
Q 001974 511 GS-IPSSLSSLRAVLAIDLSRNNLSGLIPKF--LEDLSLEYLNLSFN 554 (988)
Q Consensus 511 ~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~~~~~L~~l~l~~N 554 (988)
+. ++..+..+++|+.|+|++|++++..... ..++.+....+..+
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 55 3344467888899999999888653322 34455544444443
No 314
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.1e-28 Score=264.65 Aligned_cols=253 Identities=20% Similarity=0.188 Sum_probs=187.2
Q ss_pred cEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEeccc
Q 001974 306 RTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYD 385 (988)
Q Consensus 306 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 385 (988)
++++++++.++ .+|..+ +++|++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|+|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56677777776 556543 34688888888888877777788888888888888888877788888888888888888
Q ss_pred cc-CCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCC
Q 001974 386 NQ-LSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGS 464 (988)
Q Consensus 386 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~ 464 (988)
|+ ++...|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+..+..++.| ++|++++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence 86 776667788888888888888888887778888888888888888888874444446667777 7777777777755
Q ss_pred CccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCC
Q 001974 465 IPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDL 544 (988)
Q Consensus 465 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~ 544 (988)
.+..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+....+......
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 55567777777888888887777777777777777777777777776555667777777777777777776554332222
Q ss_pred CCcEEeCCCCcCcccCCCC
Q 001974 545 SLEYLNLSFNDLEGEVPTK 563 (988)
Q Consensus 545 ~L~~l~l~~N~l~~~~p~~ 563 (988)
.++.+..+.|.+.+..|..
T Consensus 249 ~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHHCCSEECCCBEEESGG
T ss_pred HHHhcccccCccccCCchH
Confidence 3455556666666666653
No 315
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-29 Score=294.55 Aligned_cols=215 Identities=17% Similarity=0.121 Sum_probs=145.0
Q ss_pred cccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcc
Q 001974 329 QLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLN 408 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 408 (988)
+|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..| +..+++|++|+|++|.|++..+ .++|+.|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 56677777777766666667777777777777777765444 6677777777777777764322 2667777777
Q ss_pred ccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccc-cccccceeecCCccccc
Q 001974 409 NNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIG-NLKYLRVFNVSSNNLSG 487 (988)
Q Consensus 409 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~~ 487 (988)
+|.|++..+.. +++|+.|+|++|.+++..|..+..++.| +.|+|++|.+++..|..+. .+++|+.|+|++|.|++
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77777555432 4567777777777776556666667776 6777777777766666665 57777777777777775
Q ss_pred ccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCc
Q 001974 488 EIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLE 557 (988)
Q Consensus 488 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~ 557 (988)
. |. +..+++|+.|+|++|.|++ +|..+..+++|+.|||++|+|++.++.+..+++|+.|++++|.++
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 4 22 3347777777777777775 444477777777777777777776555566667777777777776
No 316
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.6e-28 Score=261.94 Aligned_cols=252 Identities=22% Similarity=0.233 Sum_probs=219.4
Q ss_pred ccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccc
Q 001974 330 LQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNN 409 (988)
Q Consensus 330 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 409 (988)
-+.++.+++.++ .+|..+ .++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 468999999998 566654 46999999999999977778899999999999999999988899999999999999999
Q ss_pred cc-cccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccc
Q 001974 410 NS-LSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGE 488 (988)
Q Consensus 410 N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 488 (988)
|. +....|..|..+++|+.|++++|++++..|..+.+++.| ++|++++|++++..+..++.+++|+.|+|++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 97 887779999999999999999999997667888899999 9999999999977777899999999999999999976
Q ss_pred cCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCCCcccC
Q 001974 489 IPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPTKGVFA 567 (988)
Q Consensus 489 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~~~~~~ 567 (988)
.+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++.++.. ..+++|++|+|++|++++..+....+.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 6677999999999999999999999999999999999999999999988874 778899999999999998776543223
Q ss_pred cccccccccccccCCCCC
Q 001974 568 NISRISVAGFNRLCGGIP 585 (988)
Q Consensus 568 ~~~~~~~~~n~~lcg~~~ 585 (988)
.+.......+...|..|.
T Consensus 249 ~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHCCSEECCCBEEESG
T ss_pred HHHhcccccCccccCCch
Confidence 333333444555555443
No 317
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=256.11 Aligned_cols=220 Identities=24% Similarity=0.322 Sum_probs=186.5
Q ss_pred CCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCc
Q 001974 16 SGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGE 95 (988)
Q Consensus 16 ~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 95 (988)
+.++|.|.|+.|.-. ..++.+++++++++ .+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|+++..
T Consensus 1 ~~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 1 NEALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CCccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 358999998877532 34567999999999 5776654 6899999999999987777899999999999999999966
Q ss_pred CCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCc
Q 001974 96 IPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQL 175 (988)
Q Consensus 96 ~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 175 (988)
.+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 66778899999999999999998777888999999999999999998777888999999999999999987777778899
Q ss_pred ccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccc
Q 001974 176 KELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGS 240 (988)
Q Consensus 176 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~ 240 (988)
++|++|+|++|+++++.+..|..+++|++|+|++|+++ .+|...+..+++|+.|+|++|.+.+.
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999999999998777777888888888888888888 67777666777788888887777643
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.2e-27 Score=277.57 Aligned_cols=262 Identities=26% Similarity=0.303 Sum_probs=131.6
Q ss_pred CccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEec
Q 001974 201 LLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNV 280 (988)
Q Consensus 201 ~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L 280 (988)
+++.|++++|.++ .+|..++ ++|+.|+|++|.|+. +|. .+++|++|++++|+++.+.. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 4566666666666 5555543 455666666665553 222 23445555555555543222 3445555555
Q ss_pred ccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEee
Q 001974 281 AYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMG 360 (988)
Q Consensus 281 ~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 360 (988)
++|.++.++. .+++|++|++++|+++ .+|. . +++|++|+|+
T Consensus 109 s~N~l~~l~~----------~l~~L~~L~L~~N~l~-~lp~-------------------------~---l~~L~~L~Ls 149 (622)
T 3g06_A 109 FSNPLTHLPA----------LPSGLCKLWIFGNQLT-SLPV-------------------------L---PPGLQELSVS 149 (622)
T ss_dssp CSCCCCCCCC----------CCTTCCEEECCSSCCS-CCCC-------------------------C---CTTCCEEECC
T ss_pred cCCcCCCCCC----------CCCCcCEEECCCCCCC-cCCC-------------------------C---CCCCCEEECc
Confidence 5555543322 1234444444444444 2222 1 2444444444
Q ss_pred CccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccC
Q 001974 361 GNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTI 440 (988)
Q Consensus 361 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 440 (988)
+|++++ +|. .+.+|+.|++++|+|++ +| ..+++|+.|+|++|+|++ +|.. +++|+.|++++|.++ .+
T Consensus 150 ~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l 216 (622)
T 3g06_A 150 DNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SL 216 (622)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred CCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-cc
Confidence 444442 222 12344455555555542 33 223445555555555543 2221 244555555555554 44
Q ss_pred chhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCc
Q 001974 441 PEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSL 520 (988)
Q Consensus 441 p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 520 (988)
|.. ++.| +.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|.++
T Consensus 217 ~~~---~~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 217 PAL---PSGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp CCC---CTTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred CCC---CCCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 432 1333 555555555553 34 33455666666666666 4554 4556666666666666 566666666
Q ss_pred cccCeeecCCCcccCcCcc
Q 001974 521 RAVLAIDLSRNNLSGLIPK 539 (988)
Q Consensus 521 ~~L~~L~ls~N~l~~~~p~ 539 (988)
++|+.|+|++|.+++.+|.
T Consensus 284 ~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCEEECCSCCCCHHHHH
T ss_pred cccCEEEecCCCCCCcCHH
Confidence 6666666666666666554
No 319
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=6.3e-29 Score=272.83 Aligned_cols=158 Identities=19% Similarity=0.196 Sum_probs=74.5
Q ss_pred CCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhh-hhcccccceecccccccCCCcccccccccccee
Q 001974 400 SILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIF-NLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVF 478 (988)
Q Consensus 400 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L 478 (988)
++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+. .++.+ ++|+|++|++++. |. ...+++|+.|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCCcCccc-cc-ccccccCCEE
Confidence 3344444444444444444444444444444444444433333332 33344 4444444444422 21 1224555555
Q ss_pred ecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCccc-CcCccc-ccCCCCcEEeCC-CCc
Q 001974 479 NVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLS-GLIPKF-LEDLSLEYLNLS-FND 555 (988)
Q Consensus 479 ~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~-~~~~~L~~l~l~-~N~ 555 (988)
+|++|+++ .+|..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.++ +.+|.. ..+++|+.|+++ .+.
T Consensus 197 ~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp ECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 55555555 23444555555555555555555 34555555555555555555555 444443 444455555555 234
Q ss_pred CcccCCC
Q 001974 556 LEGEVPT 562 (988)
Q Consensus 556 l~~~~p~ 562 (988)
++|..|.
T Consensus 275 l~~~~~~ 281 (317)
T 3o53_A 275 LTGQNEE 281 (317)
T ss_dssp HHSSSSC
T ss_pred ccCCchh
Confidence 5554443
No 320
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-28 Score=269.55 Aligned_cols=267 Identities=16% Similarity=0.138 Sum_probs=128.9
Q ss_pred ccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEec
Q 001974 178 LKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEAL 257 (988)
Q Consensus 178 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 257 (988)
++.++++.+.+.......+..+++|++|+|++|+++ .++...+..+++|+.|+|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 72 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYE------------------ 72 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEE------------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCc------------------
Confidence 455566666666554555555556666666666665 3333333344444444444444443
Q ss_pred cccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccC
Q 001974 258 DNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTS 337 (988)
Q Consensus 258 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~ 337 (988)
..+ |..+++|++|++++|.++++ ...++|++|++++|+++
T Consensus 73 ------~~~--~~~l~~L~~L~Ls~n~l~~l-----------~~~~~L~~L~l~~n~l~--------------------- 112 (317)
T 3o53_A 73 ------TLD--LESLSTLRTLDLNNNYVQEL-----------LVGPSIETLHAANNNIS--------------------- 112 (317)
T ss_dssp ------EEE--ETTCTTCCEEECCSSEEEEE-----------EECTTCCEEECCSSCCS---------------------
T ss_pred ------chh--hhhcCCCCEEECcCCccccc-----------cCCCCcCEEECCCCccC---------------------
Confidence 222 44444455555554444321 11234444444444443
Q ss_pred CccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCC-CCCCCCCEEEcccccccccc
Q 001974 338 NQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSL-GNLSILSELLLNNNSLSGVI 416 (988)
Q Consensus 338 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~ 416 (988)
+..+. .+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+ ..+++|++|+|++|++++.
T Consensus 113 ----~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 113 ----RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp ----EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred ----CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-
Confidence 22211 12334444444444444334444444444444444444444333333 2344555555555555433
Q ss_pred ccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccc-cccCccccc
Q 001974 417 PSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLS-GEIPSQLGL 495 (988)
Q Consensus 417 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~ 495 (988)
+. ...+++|+.|+|++|+++ .+|..+..++.| +.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|..++.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L-~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV-TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTC-SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred cc-ccccccCCEEECCCCcCC-cchhhhcccCcc-cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 21 222455555555555554 344445555555 55555555555 34555555556666666666665 555555566
Q ss_pred CCCCcEEEec-CccccccCCc
Q 001974 496 CSYLEEIYMR-GNFFHGSIPS 515 (988)
Q Consensus 496 l~~L~~L~L~-~N~l~~~~p~ 515 (988)
+++|+.|+++ .+.++|..|.
T Consensus 261 ~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CHHHHHHHHHHHHHHHSSSSC
T ss_pred cccceEEECCCchhccCCchh
Confidence 6666666665 3344444443
No 321
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=5.7e-28 Score=284.21 Aligned_cols=186 Identities=16% Similarity=0.046 Sum_probs=130.0
Q ss_pred eeccccceeEEEEEECCCCeEEEEEEeeccc----------cchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCCC
Q 001974 670 LIGMGSFGSVYKGAFDQDGTIVAIKVFNLQR----------HGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGND 738 (988)
Q Consensus 670 ~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~ 738 (988)
..+.|++|.+..++..-.|+.||+|++.... ....+++.+|+++|+++ .|+||++++++ +++++
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~-----~ed~~ 315 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAH-----GENAQ 315 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEE-----EECSS
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-----EEECC
Confidence 3566777777776666678899999996432 12235699999999999 79999999999 45668
Q ss_pred ceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcE
Q 001974 739 FKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIA 818 (988)
Q Consensus 739 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 818 (988)
..||||||++|++|.+++.... +++.. +|+.||+.||+|+|++ |||||||||+|||++++|.+
T Consensus 316 ~~yLVMEyv~G~~L~d~i~~~~-----------~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~v 378 (569)
T 4azs_A 316 SGWLVMEKLPGRLLSDMLAAGE-----------EIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHA 378 (569)
T ss_dssp EEEEEEECCCSEEHHHHHHTTC-----------CCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCE
T ss_pred EEEEEEecCCCCcHHHHHHhCC-----------CCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCE
Confidence 9999999999999999997654 45543 5899999999999999 99999999999999999999
Q ss_pred EEeeecccccccccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCC
Q 001974 819 HVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKP 882 (988)
Q Consensus 819 kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p 882 (988)
||+|||+|+....... .....+||+.|||||++.+ .+..++|+||+|++++++.++..+
T Consensus 379 KL~DFGlAr~~~~~~~----~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 379 RLIDFGSIVTTPQDCS----WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp EECCCTTEESCC---C----CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred EEeecccCeeCCCCCc----cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 9999999986544322 1223579999999999876 467789999999998887766554
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-27 Score=274.83 Aligned_cols=235 Identities=20% Similarity=0.191 Sum_probs=196.3
Q ss_pred CCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeE
Q 001974 302 CSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGM 381 (988)
Q Consensus 302 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 381 (988)
.++|++|+|++|.+++..|..+..++ +|+.|+|++|.+++..| +..+++|+.|+|++|.|++..+ .++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 44788888888888866666776664 78899999998886655 8899999999999999984332 3899999
Q ss_pred ecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhh-hhcccccceeccccc
Q 001974 382 GLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIF-NLTYLSNSLNLARNH 460 (988)
Q Consensus 382 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~l~~~L~ls~N~ 460 (988)
+|++|.+++..+.. +++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++.+|..+. .++.| +.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSC
T ss_pred ECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCc
Confidence 99999999766553 57899999999999998899999999999999999999988888876 68888 999999999
Q ss_pred ccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCccc-CcCcc
Q 001974 461 LVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLS-GLIPK 539 (988)
Q Consensus 461 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~ 539 (988)
+++. |. +..+++|+.|+|++|.|++ +|..|+.+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+. +.+|.
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 9865 33 4468999999999999995 56669999999999999999995 7888999999999999999998 66665
Q ss_pred c-ccCCCCcEEeCC
Q 001974 540 F-LEDLSLEYLNLS 552 (988)
Q Consensus 540 ~-~~~~~L~~l~l~ 552 (988)
. ..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 5 555567666665
No 323
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.1e-29 Score=303.15 Aligned_cols=463 Identities=15% Similarity=0.114 Sum_probs=249.9
Q ss_pred CCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccc---cCCcc------------cCCCCCC
Q 001974 18 HFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQG---EIPRE------------FGRLFRL 82 (988)
Q Consensus 18 ~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~---~~p~~------------~~~l~~L 82 (988)
-|++|.++... ....++++..... ..+..+..+++|++|+|+++.... ..|.. +..+++|
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 35579888221 2234555544322 233456778999999999986321 22221 2357789
Q ss_pred cEEECCCCCCCCcCCcccc-cCCCCceeecCcc-cccCC-CcccccCcccccccccccccccCCCCCccc----CCCccc
Q 001974 83 EALFLSDNDLVGEIPANLS-YCSRLTILFLGRN-KLMGS-IPFEFFSLYKLKQLAMQRNNLTGGIPPFIG----NLTSLE 155 (988)
Q Consensus 83 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~ 155 (988)
++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 9999999888877666665 6888999999888 55422 334444788888888888887754444333 566888
Q ss_pred eeeccccccCCCCCccc----cCcccccccccccc-cccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCCcce
Q 001974 156 SISLAANAFGGNIPNSL----GQLKELKSLGLGAN-NLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLF 230 (988)
Q Consensus 156 ~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L 230 (988)
+|++++|. .......+ .++++|++|+|++| .++ .++..+..+++|++|+++.+...
T Consensus 188 ~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~----------------- 248 (594)
T 2p1m_B 188 SLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAE----------------- 248 (594)
T ss_dssp EEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCC-----------------
T ss_pred EEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCc-----------------
Confidence 88888876 21212222 34578888888877 444 36777777788888876554321
Q ss_pred eccccccccccCcccccCCcccEE-EeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcEEE
Q 001974 231 QVHHNFFSGSIPISLSNASKLEFI-EALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRTLI 309 (988)
Q Consensus 231 ~L~~N~l~~~~p~~l~~l~~L~~L-~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~ 309 (988)
++.|.+.+ ++..+.++++|+.| .+.+... ...+..+..+++|++|++++|.++.. .....+..+++|++|+
T Consensus 249 -~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 249 -VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLW 320 (594)
T ss_dssp -CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEE
T ss_pred -cchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEe
Confidence 22333332 22245555566655 2222211 22233333556667777766664321 1112234566666666
Q ss_pred eecccCCCCCCchhhhccccccEEEccC---------CccccCCCcccc-CCCcceEEEeeCccCCCccCcccC-CCCcc
Q 001974 310 FAANKLRGALPHSIANLSDQLQNLIMTS---------NQLHGSIPSGIG-NLVGLYRLGMGGNQFTGTIPKEMG-KLQNL 378 (988)
Q Consensus 310 Ls~N~l~~~~p~~~~~~~~~L~~L~L~~---------N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L 378 (988)
+++| ++......+....++|++|++++ +.+++.....+. .+++|+.|.++.|++++..+..+. .+++|
T Consensus 321 l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L 399 (594)
T 2p1m_B 321 VLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399 (594)
T ss_dssp EEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC
T ss_pred CcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc
Confidence 6666 32111111222223455555522 222221111111 244555555555555433333332 24455
Q ss_pred CeEecccccCCCCCCCCCCCCCCCCEEEcccccccc-----ccccccccccccceeecCCCCCCccCchhhhh-hccccc
Q 001974 379 EGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSG-----VIPSCLGSLKQLAILHLFENGLNGTIPEEIFN-LTYLSN 452 (988)
Q Consensus 379 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~l~~ 452 (988)
+.|+|+.|...+ -|.++. .++..+..+++|+.|++++ .+++..+..+.. ++.| +
T Consensus 400 ~~L~L~~~~~~~------------------~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L-~ 459 (594)
T 2p1m_B 400 TRFRLCIIEPKA------------------PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM-E 459 (594)
T ss_dssp CEEEEEESSTTC------------------CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC-C
T ss_pred ceeEeecccCCC------------------cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc-c
Confidence 555555111000 022321 1122244556666666655 454444444444 4555 6
Q ss_pred ceecccccccCCCcccc-ccccccceeecCCcccccccCc-ccccCCCCcEEEecCccccccCCccc-cCccccCeeecC
Q 001974 453 SLNLARNHLVGSIPTKI-GNLKYLRVFNVSSNNLSGEIPS-QLGLCSYLEEIYMRGNFFHGSIPSSL-SSLRAVLAIDLS 529 (988)
Q Consensus 453 ~L~ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~ls 529 (988)
.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+.|++++|+++......+ ..+++|+...+.
T Consensus 460 ~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 66666666654444333 4567777777777777544333 33446777777777777754333333 345666666666
Q ss_pred CCcc
Q 001974 530 RNNL 533 (988)
Q Consensus 530 ~N~l 533 (988)
.+.-
T Consensus 540 ~~~~ 543 (594)
T 2p1m_B 540 ERGA 543 (594)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 5543
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.8e-25 Score=240.28 Aligned_cols=228 Identities=19% Similarity=0.189 Sum_probs=126.6
Q ss_pred EEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEeccccc
Q 001974 308 LIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQ 387 (988)
Q Consensus 308 L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 387 (988)
.+..+..++ .+|..+. +.|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|+|++|+
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444444 4444332 356666666666665555566666666666666666665555566666666666666666
Q ss_pred CCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCc-cCchhhhhhcccccceecccccccCCCc
Q 001974 388 LSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNG-TIPEEIFNLTYLSNSLNLARNHLVGSIP 466 (988)
Q Consensus 388 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~l~~~L~ls~N~l~~~~p 466 (988)
+++..+..|.++++|++|++++|++.+..+..+..+++|+.|++++|++++ .+|..+.+++.| ++|++++|++++..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCH
Confidence 665555666666666666666666665555556666666666666666653 234455555444 455555555544444
Q ss_pred cccccccccceeecCCcccccccCcccccCCCCc-EEEecCccccccCCccccCccccCeeecCCCcccCcCccc-ccCC
Q 001974 467 TKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLE-EIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDL 544 (988)
Q Consensus 467 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~ 544 (988)
..+..+.+|+ .|. .|++++|.+++..+..+.. .+|+.|+|++|++++.++.. ..++
T Consensus 167 ~~~~~l~~L~---------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 167 TDLRVLHQMP---------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp GGGHHHHTCT---------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred HHhhhhhhcc---------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccc
Confidence 4444444444 010 4555555555333333322 24555555555555555443 3445
Q ss_pred CCcEEeCCCCcCcccCCC
Q 001974 545 SLEYLNLSFNDLEGEVPT 562 (988)
Q Consensus 545 ~L~~l~l~~N~l~~~~p~ 562 (988)
+|++|+|++|++++..|.
T Consensus 225 ~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 225 SLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp SCCEEECCSSCBCCCTTT
T ss_pred cccEEEccCCcccccCCc
Confidence 566666666666665553
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.2e-25 Score=241.68 Aligned_cols=220 Identities=18% Similarity=0.171 Sum_probs=170.8
Q ss_pred EcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCccccc
Q 001974 38 NLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLM 117 (988)
Q Consensus 38 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~ 117 (988)
+..+.+++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+.+++|++|+|++|+++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33444555 4555553 57999999999999888889999999999999999999777788999999999999999999
Q ss_pred CCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCC-CCccccCcccccccccccccccCccchhh
Q 001974 118 GSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGN-IPNSLGQLKELKSLGLGANNLSGIIPPSI 196 (988)
Q Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 196 (988)
+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++. +|..|.++++|++|+|++|++++..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 88888999999999999999999977777899999999999999999864 58889999999999999999998777888
Q ss_pred ccccCcc----EEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEecccccc
Q 001974 197 YNLSLLA----NFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFS 262 (988)
Q Consensus 197 ~~l~~L~----~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~ 262 (988)
..+++|+ .|++++|++. .++...+. ..+|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhccccceeeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 8877777 7777777777 45444442 235555555555555444444444444444444444444
No 326
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.9e-29 Score=300.79 Aligned_cols=230 Identities=14% Similarity=0.088 Sum_probs=157.4
Q ss_pred cccEEEccCCccccCCC-ccccCCCcceEEEeeCccCCCc-cCcccCCCCccCeEeccc---------ccCCCCCCCCCC
Q 001974 329 QLQNLIMTSNQLHGSIP-SGIGNLVGLYRLGMGGNQFTGT-IPKEMGKLQNLEGMGLYD---------NQLSGEIPSSLG 397 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~---------N~l~~~~p~~~~ 397 (988)
+|+.|++++|.+++... ..+..+++|+.|++++| +... ++.....+++|+.|+|++ |.+++.....+.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 56666666666543222 22456778888888887 4322 222233577888888843 444432222222
Q ss_pred -CCCCCCEEEccccccccccccccc-cccccceeecC--C----CCCCc-----cCchhhhhhcccccceecccccccCC
Q 001974 398 -NLSILSELLLNNNSLSGVIPSCLG-SLKQLAILHLF--E----NGLNG-----TIPEEIFNLTYLSNSLNLARNHLVGS 464 (988)
Q Consensus 398 -~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~--~----N~l~~-----~~p~~~~~l~~l~~~L~ls~N~l~~~ 464 (988)
++++|+.|.++.|.+++..+..+. .+++|+.|+++ + |.+++ .++..+..++.| +.|++++ .+++.
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-LLTDK 446 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-SCCHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-cccHH
Confidence 378899999999999876666665 58999999999 4 66662 122235667788 9999987 67666
Q ss_pred Ccccccc-ccccceeecCCcccccccCccc-ccCCCCcEEEecCccccccCCc-cccCccccCeeecCCCcccCcCccc-
Q 001974 465 IPTKIGN-LKYLRVFNVSSNNLSGEIPSQL-GLCSYLEEIYMRGNFFHGSIPS-SLSSLRAVLAIDLSRNNLSGLIPKF- 540 (988)
Q Consensus 465 ~p~~~~~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~- 540 (988)
.+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++......
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence 5666665 8999999999999987766666 6799999999999999765554 3456899999999999985432222
Q ss_pred -ccCCCCcEEeCCCCcCcccCC
Q 001974 541 -LEDLSLEYLNLSFNDLEGEVP 561 (988)
Q Consensus 541 -~~~~~L~~l~l~~N~l~~~~p 561 (988)
..++.|+...+..+.-....|
T Consensus 527 ~~~lp~l~i~~~~~~~~~~~~~ 548 (594)
T 2p1m_B 527 GQKMPKLNVEVIDERGAPDSRP 548 (594)
T ss_dssp HHHCTTEEEEEECSSSCGGGSC
T ss_pred HHhCCCCEEEEecCCCcccccc
Confidence 345677766676665444333
No 327
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.5e-25 Score=232.69 Aligned_cols=192 Identities=22% Similarity=0.215 Sum_probs=166.6
Q ss_pred CCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcC
Q 001974 17 GHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEI 96 (988)
Q Consensus 17 ~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 96 (988)
.+||.|.||+|.. ..+.+++++++++ .+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|+|++..
T Consensus 2 ~~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 2 KTCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp --CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred ccCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 4689999999963 3446899999998 6776665 68999999999999888889999999999999999999888
Q ss_pred CcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcc
Q 001974 97 PANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLK 176 (988)
Q Consensus 97 p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 176 (988)
|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.+++
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 88899999999999999999988888889999999999999999977777788899999999999999877777888899
Q ss_pred cccccccccccccCccchhhccccCccEEEeccCCCCC
Q 001974 177 ELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHG 214 (988)
Q Consensus 177 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~ 214 (988)
+|++|+|++|+|++..+..+..+++|+.|+|++|.+.+
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999999999987777788888888888888888873
No 328
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.4e-24 Score=229.36 Aligned_cols=201 Identities=20% Similarity=0.252 Sum_probs=141.5
Q ss_pred CCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccc
Q 001974 57 FLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQ 136 (988)
Q Consensus 57 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 136 (988)
..+.+++++++++ .+|..+. ++|++|+|++|++++..+..|+.+++|++|+|++|+|+...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888888 5666553 678888888888886666678888888888888888886666667778888888888
Q ss_pred cccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCC
Q 001974 137 RNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSL 216 (988)
Q Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~l 216 (988)
+|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+++ .+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-Ee
Confidence 88887666667777888888888888887766777777777777777777777665556667777777777777766 45
Q ss_pred CCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccc
Q 001974 217 PPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSF 261 (988)
Q Consensus 217 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i 261 (988)
|...+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 555454555555555555555544444444444444444444444
No 329
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.5e-24 Score=232.25 Aligned_cols=205 Identities=20% Similarity=0.202 Sum_probs=125.8
Q ss_pred ccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccc
Q 001974 348 IGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLA 427 (988)
Q Consensus 348 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 427 (988)
+..+++++.+++++|+++ .+|..+. ++++.|+|++|++++..|..|.++++|+.|+|++|.|++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 334455555555555555 3443332 455555555555555555555555666666666666554322 15556666
Q ss_pred eeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCc
Q 001974 428 ILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGN 507 (988)
Q Consensus 428 ~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N 507 (988)
.|++++|+++ .+|..+..++.+ ++|++++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 6666666665 556555556665 66666666666555566667777777777777777555556667777777777777
Q ss_pred cccccCCccccCccccCeeecCCCcccCcCcccccCCCCcEEeCCCCcCccc
Q 001974 508 FFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEYLNLSFNDLEGE 559 (988)
Q Consensus 508 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~l~l~~N~l~~~ 559 (988)
+|++..+..|..+++|+.|+|++|+|+..++......+|+.|+|++|.+...
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 7775545556667777777777777776655556666677777777766543
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=4.1e-24 Score=230.55 Aligned_cols=197 Identities=22% Similarity=0.188 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecC
Q 001974 33 RVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLG 112 (988)
Q Consensus 33 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (988)
.++.+++++++++ .+|+.+. +++++|+|++|+|++..|..|..+++|++|+|++|.|++..+ . +.+++|++|+|+
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECC
Confidence 3444555555554 3333332 345555555555554444555555555555555555553222 1 444555555555
Q ss_pred cccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCcc
Q 001974 113 RNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGII 192 (988)
Q Consensus 113 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 192 (988)
+|+|+ .+|..+.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+|+.+.
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 55554 34444445555555555555555444444455555555555555554444444444445555555555544433
Q ss_pred chhhccccCccEEEeccCCCCCCCCCcccccCCCCcceecccccc
Q 001974 193 PPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFF 237 (988)
Q Consensus 193 ~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l 237 (988)
+..|..+++|+.|+|++|+++ .+|..++ .+++|+.|+|++|.+
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCB
T ss_pred HHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCc
Confidence 334444444444444444444 4444333 223344444444433
No 331
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.1e-24 Score=231.07 Aligned_cols=223 Identities=24% Similarity=0.285 Sum_probs=147.6
Q ss_pred EcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCccccc
Q 001974 38 NLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLM 117 (988)
Q Consensus 38 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~ 117 (988)
++..+.+... ..+..+++|++|++++|.++. + ..+..+++|++|+|++|.+++ + ..++.+++|++|+|++|+++
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 25 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred HhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC
Confidence 3444444433 234556677777777777762 2 246667777777777777764 2 35667777777777777777
Q ss_pred CCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhc
Q 001974 118 GSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIY 197 (988)
Q Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 197 (988)
+..+..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..+.
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 66666677777777777777777766666667777777777777777766666667777777777777777766666667
Q ss_pred cccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCcc
Q 001974 198 NLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKN 274 (988)
Q Consensus 198 ~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~ 274 (988)
.+++|++|++++|+++ .++...+..+++|+.|++++|.+.+. ++.|+.|+++.|.++|.+|..++.+..
T Consensus 179 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 7777777777777776 45555555677777777777766543 335666677777777777766655543
No 332
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.1e-24 Score=227.51 Aligned_cols=207 Identities=22% Similarity=0.215 Sum_probs=190.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeec
Q 001974 32 RRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFL 111 (988)
Q Consensus 32 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (988)
..++.|+++++.++. + +.+..+++|++|+|++|++++ + ..+..+++|++|+|++|.+++..+..|+.+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 578999999999884 3 358999999999999999995 3 47999999999999999999888888999999999999
Q ss_pred CcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCc
Q 001974 112 GRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGI 191 (988)
Q Consensus 112 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 191 (988)
++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|+|++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 99999988888899999999999999999988788899999999999999999988888899999999999999999998
Q ss_pred cchhhccccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCc
Q 001974 192 IPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASK 250 (988)
Q Consensus 192 ~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 250 (988)
.+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|..++.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 88889999999999999999884 4668999999999999999999887754
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.9e-24 Score=226.84 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=132.4
Q ss_pred cccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCC-CCCcCCcccccCCCCceeecCc-ccccCCCcccc
Q 001974 47 SLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDND-LVGEIPANLSYCSRLTILFLGR-NKLMGSIPFEF 124 (988)
Q Consensus 47 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-N~i~~~~~~~~ 124 (988)
.+|. +. ++|++|+|++|+|+++.+..|.++++|++|+|++|. ++...+..|..+++|++|+|++ |+|++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4554 33 378999999999997777789999999999999996 8866666888888888998888 88887677788
Q ss_pred cCcccccccccccccccCCCCCcccCCCccc---eeecccc-ccCCCCCccccCccccc-ccccccccccCccchhhccc
Q 001974 125 FSLYKLKQLAMQRNNLTGGIPPFIGNLTSLE---SISLAAN-AFGGNIPNSLGQLKELK-SLGLGANNLSGIIPPSIYNL 199 (988)
Q Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~l~~l 199 (988)
.++++|++|++++|++++ +|. |..+++|+ +|++++| +++...+..|.++++|+ +|+|++|+++.+.+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 888888888888888874 555 77777777 7777777 77766666677777777 7777777776333333333
Q ss_pred cCccEEEeccCC-CCCCCCCcccccC-CCCcceeccccccc
Q 001974 200 SLLANFSVPRNQ-FHGSLPPSLGLTL-PHLRLFQVHHNFFS 238 (988)
Q Consensus 200 ~~L~~L~L~~N~-i~~~lp~~~~~~l-~~L~~L~L~~N~l~ 238 (988)
++|+.|++++|+ ++ .+|...+.++ ++|+.|++++|+++
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccc
Confidence 566666666663 55 4554444445 55555555555554
No 334
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.90 E-value=6.6e-25 Score=256.72 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=142.1
Q ss_pred CCCCceeccccceeEEEEEECCCCeEEEEEEeecccc--------chhHHHHHHHHHHHhcCCCCce--EEEeecccccc
Q 001974 665 FSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH--------GASKSFLAECKALKNIRHRNLV--KVITSCSSIDF 734 (988)
Q Consensus 665 y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv--~~~~~~~~~~~ 734 (988)
+...+.||+|+||.||+|.. .++.+++|+...... ...+.+.+|++++++++||||+ .++++
T Consensus 338 ~~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~------ 409 (540)
T 3en9_A 338 KIPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDV------ 409 (540)
T ss_dssp ----------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEE------
T ss_pred CCCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEE------
Confidence 34567999999999999955 678899998643221 1134589999999999999999 55544
Q ss_pred cCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCC
Q 001974 735 QGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDN 814 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~ 814 (988)
..+..++||||+++++|.+++.. +..++.|+++||+|||++ +|+||||||+|||++.
T Consensus 410 -~~~~~~lVmE~~~ggsL~~~l~~-------------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~ 466 (540)
T 3en9_A 410 -DLDNKRIMMSYINGKLAKDVIED-------------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK 466 (540)
T ss_dssp -ETTTTEEEEECCCSEEHHHHSTT-------------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS
T ss_pred -eCCccEEEEECCCCCCHHHHHHH-------------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC
Confidence 23566999999999999999864 347999999999999998 9999999999999998
Q ss_pred CCcEEEeeecccccccccccccce---eccccccccccccCcccCC--CCCCCccchHHHHHHHHHHHhCCCCCC
Q 001974 815 DMIAHVGDFGLARVRQEVSNLTQS---CSVGVRGTIGYAAPEYGLG--SEVSTNGDIYSYGILLLEMVTGKKPTD 884 (988)
Q Consensus 815 ~~~~kL~DfG~a~~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwslG~vl~elltg~~p~~ 884 (988)
.+||+|||+|+........... ......||+.|||||++.. ..|+..+|+|+..+-..+-..++.+|.
T Consensus 467 --~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 467 --DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp --SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred --eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 9999999999976543221100 1124569999999999887 567888999999999888888777763
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.6e-24 Score=237.05 Aligned_cols=225 Identities=17% Similarity=0.196 Sum_probs=126.7
Q ss_pred CCCcEEEeecccCCCCCCchhhh--ccccccEEEccCCccccCCCccc--cCCCcceEEEeeCccCCCccC----cccCC
Q 001974 303 SNLRTLIFAANKLRGALPHSIAN--LSDQLQNLIMTSNQLHGSIPSGI--GNLVGLYRLGMGGNQFTGTIP----KEMGK 374 (988)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~p~~~~~--~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 374 (988)
..++.+.+.++.++...-..+.. ..++|++|++++|.+.+..|..+ ..+++|+.|+|++|++++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45777888777665211111111 01247777777777777777766 677777777777777775444 23456
Q ss_pred CCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccc--c--ccccccccccceeecCCCCCCccCchh----hhh
Q 001974 375 LQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGV--I--PSCLGSLKQLAILHLFENGLNGTIPEE----IFN 446 (988)
Q Consensus 375 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~~----~~~ 446 (988)
+++|++|+|++|++++..|..|+++++|++|+|++|++.+. + +..+..+++|++|+|++|+++ .+|.. +..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 67777777777777766667777777777777777776542 1 222356677777777777775 34432 233
Q ss_pred hcccccceecccccccCCCccccccc---cccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCcccc
Q 001974 447 LTYLSNSLNLARNHLVGSIPTKIGNL---KYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAV 523 (988)
Q Consensus 447 l~~l~~~L~ls~N~l~~~~p~~~~~l---~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 523 (988)
++.| ++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++|
T Consensus 223 l~~L-~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQP-HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCC-SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCC-CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 4444 555555555554445444443 35555555555555 3444332 4444444444444432 22 3344444
Q ss_pred CeeecCCCccc
Q 001974 524 LAIDLSRNNLS 534 (988)
Q Consensus 524 ~~L~ls~N~l~ 534 (988)
+.|+|++|+|+
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 44444444443
No 336
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=8.1e-24 Score=231.39 Aligned_cols=224 Identities=17% Similarity=0.131 Sum_probs=183.8
Q ss_pred cccEEEccCCccccCCCc---cccCCCcceEEEeeCccCCCccCccc--CCCCccCeEecccccCCCCCC----CCCCCC
Q 001974 329 QLQNLIMTSNQLHGSIPS---GIGNLVGLYRLGMGGNQFTGTIPKEM--GKLQNLEGMGLYDNQLSGEIP----SSLGNL 399 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l 399 (988)
.++.|.+.++.+...... .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 478888888877532111 12234669999999999998899888 899999999999999997655 345678
Q ss_pred CCCCEEEccccccccccccccccccccceeecCCCCCCcc--Cch--hhhhhcccccceecccccccCCCcc----cccc
Q 001974 400 SILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGT--IPE--EIFNLTYLSNSLNLARNHLVGSIPT----KIGN 471 (988)
Q Consensus 400 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~--~~~~l~~l~~~L~ls~N~l~~~~p~----~~~~ 471 (988)
++|++|+|++|++.+..|..|+.+++|++|+|++|++.+. ++. .+..++.| ++|+|++|+++ .+|. .++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI-QNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC-CSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC-CEEECCCCCCC-chHHHHHHHHhc
Confidence 9999999999999988889999999999999999998753 332 23577888 99999999997 4443 2577
Q ss_pred ccccceeecCCcccccccCcccccC---CCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcccccCCCCcE
Q 001974 472 LKYLRVFNVSSNNLSGEIPSQLGLC---SYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKFLEDLSLEY 548 (988)
Q Consensus 472 l~~L~~L~ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~L~~ 548 (988)
+++|++|||++|+|++..|..++.+ ++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |....+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccE
Confidence 8999999999999998888888877 69999999999999 7788775 7999999999999986 44667788999
Q ss_pred EeCCCCcCcc
Q 001974 549 LNLSFNDLEG 558 (988)
Q Consensus 549 l~l~~N~l~~ 558 (988)
|+|++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999864
No 337
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.7e-24 Score=223.83 Aligned_cols=214 Identities=19% Similarity=0.171 Sum_probs=185.5
Q ss_pred CCCCCcee-eee--EEeC------CCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCc-ccccCCcccCCCCCCcE
Q 001974 15 DSGHFCEW-KGI--TCGL------RHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNS-IQGEIPREFGRLFRLEA 84 (988)
Q Consensus 15 ~~~~~c~~-~~v--~c~~------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~ 84 (988)
+..+.|.+ ..+ .|.. .+..++.|++++|++++..+..|..+++|++|+|++|+ ++++.+..|.++++|++
T Consensus 5 p~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~ 84 (239)
T 2xwt_C 5 SPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84 (239)
T ss_dssp SSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCE
T ss_pred CCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcE
Confidence 44566755 544 4864 34579999999999998777799999999999999997 99778889999999999
Q ss_pred EECCC-CCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccc---ccccccc-cccCCCCCcccCCCccc-eee
Q 001974 85 LFLSD-NDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLK---QLAMQRN-NLTGGIPPFIGNLTSLE-SIS 158 (988)
Q Consensus 85 L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~ 158 (988)
|+|++ |++++..+..|..+++|++|+|++|++++ +|. |..+++|+ +|++++| .+++..+..|.++++|+ +|+
T Consensus 85 L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred EECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 99999 99997777899999999999999999995 665 88888888 9999999 99977777899999999 999
Q ss_pred ccccccCCCCCccccCccccccccccccc-ccCccchhhccc-cCccEEEeccCCCCCCCCCcccccCCCCcceecccc
Q 001974 159 LAANAFGGNIPNSLGQLKELKSLGLGANN-LSGIIPPSIYNL-SLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHN 235 (988)
Q Consensus 159 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l-~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N 235 (988)
+++|+++...+..|.. ++|+.|+|++|+ ++.+.+..|.++ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 9999999555555665 899999999995 997778899999 99999999999999 78776 4678888887765
No 338
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.6e-23 Score=233.14 Aligned_cols=245 Identities=17% Similarity=0.135 Sum_probs=180.7
Q ss_pred CCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCC
Q 001974 18 HFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIP 97 (988)
Q Consensus 18 ~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 97 (988)
|.|+|..|.|. +++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|
T Consensus 7 C~C~~~~v~C~------------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 7 CHCSNRVFLCQ------------ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp SEEETTEEEEE------------STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred cEeeCCEEEec------------CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 44677666665 56666 567666 3679999999999997777789999999999999999866555
Q ss_pred -cccccCCCCce-eecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccc-cccCCCCCccccC
Q 001974 98 -ANLSYCSRLTI-LFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAA-NAFGGNIPNSLGQ 174 (988)
Q Consensus 98 -~~~~~l~~L~~-L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~ 174 (988)
.+|.++++|+. +.+++|+|+.+.|++|.++++|++|++++|+++...+..+....++..|++.+ |++....+.+|..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 56888888765 66778999888888999999999999999999876666777777888888865 6777666677877
Q ss_pred cc-cccccccccccccCccchhhccccCccEEEecc-CCCCCCCCCcccccCCCCcceeccccccccccCcccccCCccc
Q 001974 175 LK-ELKSLGLGANNLSGIIPPSIYNLSLLANFSVPR-NQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLE 252 (988)
Q Consensus 175 l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~-N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 252 (988)
+. .++.|+|++|+|+.+ |.......+|++|++++ |.++ .+|..+|.++++|+.|+|++|+|+...+..+.++.+|+
T Consensus 152 ~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp SBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred cchhhhhhccccccccCC-ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 75 588899999999854 44444556788888875 5565 88888888888888888888888865555555444444
Q ss_pred EEEeccccccCcccccccCCccccEEecccc
Q 001974 253 FIEALDNSFSGKLSVNFGGMKNLSYFNVAYN 283 (988)
Q Consensus 253 ~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N 283 (988)
.++ +.--...| .+..+++|+.++++++
T Consensus 230 ~l~---~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARS---TYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTT---CTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hcc---CCCcCcCC-CchhCcChhhCcCCCC
Confidence 333 22222333 2555666666666543
No 339
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.7e-25 Score=246.14 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=176.8
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCC----cccCCCC-CCcEEECCCCCCCCcCCcccccC-----CC
Q 001974 36 VLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIP----REFGRLF-RLEALFLSDNDLVGEIPANLSYC-----SR 105 (988)
Q Consensus 36 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~ 105 (988)
.+++++|++++.+|..+...++|++|||++|+|++..+ ..|..++ +|++|+|++|.+++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788899998888877777779999999999987666 6788888 89999999999987777777775 88
Q ss_pred CceeecCcccccCCCcccccCc-----ccccccccccccccCCCCCccc----C-CCccceeeccccccCCCCC----cc
Q 001974 106 LTILFLGRNKLMGSIPFEFFSL-----YKLKQLAMQRNNLTGGIPPFIG----N-LTSLESISLAANAFGGNIP----NS 171 (988)
Q Consensus 106 L~~L~L~~N~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~----~-l~~L~~L~L~~N~l~~~~~----~~ 171 (988)
|++|+|++|++++..+..+... ++|++|+|++|.+++..+..+. . .++|++|+|++|+++...+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999887777655543 7888888888888865554433 3 2588888888888875433 33
Q ss_pred ccCcc-cccccccccccccCccchhhccc-----cCccEEEeccCCCCCC----CCCcccccCCCCcceecccccccccc
Q 001974 172 LGQLK-ELKSLGLGANNLSGIIPPSIYNL-----SLLANFSVPRNQFHGS----LPPSLGLTLPHLRLFQVHHNFFSGSI 241 (988)
Q Consensus 172 ~~~l~-~L~~L~L~~N~l~~~~~~~l~~l-----~~L~~L~L~~N~i~~~----lp~~~~~~l~~L~~L~L~~N~l~~~~ 241 (988)
+..++ +|++|+|++|+|++..+..+... ++|++|+|++|+|++. ++..+....++|+.|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34454 78888888888876666544433 4777777777777632 22222211235555555555554332
Q ss_pred CcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCc-hhhhcccccCCCCcEEEeecccCCCCCC
Q 001974 242 PISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDE-MSFMNSLANCSNLRTLIFAANKLRGALP 320 (988)
Q Consensus 242 p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 320 (988)
+..+ ...+..+++|+.|++++|.+..+.... ......+..+++|+.|++++|++.+..+
T Consensus 242 ~~~l--------------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENL--------------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHH--------------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHH--------------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2111 122344556666666666654443321 1222345566667777777777765544
Q ss_pred chhh
Q 001974 321 HSIA 324 (988)
Q Consensus 321 ~~~~ 324 (988)
..+.
T Consensus 302 ~~~~ 305 (362)
T 3goz_A 302 IPIS 305 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 340
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=9.3e-25 Score=244.42 Aligned_cols=81 Identities=19% Similarity=0.084 Sum_probs=43.4
Q ss_pred EEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCC----cccccCC-CCceeecCcccccCCCcccccCc-----ccc
Q 001974 61 INLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIP----ANLSYCS-RLTILFLGRNKLMGSIPFEFFSL-----YKL 130 (988)
Q Consensus 61 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l-----~~L 130 (988)
+.|++|++++.+|..+....+|++|+|++|.+++..+ ..|..++ +|++|+|++|+|++..+..|..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666665555555555556666666666654443 4455555 55555555555554445444443 444
Q ss_pred ccccccccccc
Q 001974 131 KQLAMQRNNLT 141 (988)
Q Consensus 131 ~~L~L~~N~l~ 141 (988)
++|+|++|.++
T Consensus 83 ~~L~Ls~n~l~ 93 (362)
T 3goz_A 83 TSLNLSGNFLS 93 (362)
T ss_dssp CEEECCSSCGG
T ss_pred cEEECcCCcCC
Confidence 44444444444
No 341
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=7.3e-23 Score=216.35 Aligned_cols=180 Identities=21% Similarity=0.215 Sum_probs=95.9
Q ss_pred cccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcc
Q 001974 329 QLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLN 408 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 408 (988)
..+.++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666665 4444433 355555555555555445555555555555555555555445455555555555555
Q ss_pred ccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccc
Q 001974 409 NNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGE 488 (988)
Q Consensus 409 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 488 (988)
+|++++..+..|..+++|+.|+|++|+++ +..+..|..+++|+.|+|++|+|++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCC-------------------------CcChhHhccCCcccEEECcCCcCCcc
Confidence 55555444444555555555555555444 22233344455555555555555544
Q ss_pred cCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCc
Q 001974 489 IPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGL 536 (988)
Q Consensus 489 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 536 (988)
.+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|++|.+++.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 444555555555555555555554445555555555555555555544
No 342
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.4e-25 Score=246.98 Aligned_cols=232 Identities=16% Similarity=0.230 Sum_probs=176.0
Q ss_pred cccEEEccCCccccC----CCccccCCCcceEEEeeCcc---CCCccCccc-------CCCCccCeEecccccCCC----
Q 001974 329 QLQNLIMTSNQLHGS----IPSGIGNLVGLYRLGMGGNQ---FTGTIPKEM-------GKLQNLEGMGLYDNQLSG---- 390 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~---l~~~~p~~~-------~~l~~L~~L~L~~N~l~~---- 390 (988)
.|+.|+|++|.+... ++..+..+++|+.|+|++|. +++.+|..+ ..+++|++|+|++|++++
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 355555555555433 22345667788888888753 444455444 678889999999998886
Q ss_pred CCCCCCCCCCCCCEEEccccccccccccccc----cc---------cccceeecCCCCCC-ccCc---hhhhhhcccccc
Q 001974 391 EIPSSLGNLSILSELLLNNNSLSGVIPSCLG----SL---------KQLAILHLFENGLN-GTIP---EEIFNLTYLSNS 453 (988)
Q Consensus 391 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~~L~l~~N~l~-~~~p---~~~~~l~~l~~~ 453 (988)
.+|..+..+++|++|+|++|.+....+..+. .+ ++|+.|+|++|+++ +.+| ..+..++.| ++
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~ 191 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-HT 191 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-CE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc-CE
Confidence 3666778888999999999988755444444 33 88999999999997 4555 456677787 89
Q ss_pred eeccccccc--C---CCccccccccccceeecCCcccc----cccCcccccCCCCcEEEecCcccccc----CCccc--c
Q 001974 454 LNLARNHLV--G---SIPTKIGNLKYLRVFNVSSNNLS----GEIPSQLGLCSYLEEIYMRGNFFHGS----IPSSL--S 518 (988)
Q Consensus 454 L~ls~N~l~--~---~~p~~~~~l~~L~~L~ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~--~ 518 (988)
|++++|+++ | ..|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+ +
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 999999887 2 34557888999999999999996 67888999999999999999999876 56777 3
Q ss_pred CccccCeeecCCCcccC----cCccc--ccCCCCcEEeCCCCcCcccCC
Q 001974 519 SLRAVLAIDLSRNNLSG----LIPKF--LEDLSLEYLNLSFNDLEGEVP 561 (988)
Q Consensus 519 ~l~~L~~L~ls~N~l~~----~~p~~--~~~~~L~~l~l~~N~l~~~~p 561 (988)
.+++|+.|+|++|++++ .+|.. ..+++|++|+|++|++++..|
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 48999999999999998 35543 446899999999999987554
No 343
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.2e-22 Score=206.22 Aligned_cols=160 Identities=24% Similarity=0.240 Sum_probs=110.6
Q ss_pred CCCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCC
Q 001974 15 DSGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVG 94 (988)
Q Consensus 15 ~~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 94 (988)
+..+.|.|.+|.|.. ++++ .+|..+ .++|++|+|++|+|++..+..|..+++|++|+|++|++++
T Consensus 2 p~~C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 66 (208)
T 2o6s_A 2 PSRCSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66 (208)
T ss_dssp CTTCEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred cCCCEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc
Confidence 356779999999963 3344 344433 3578888888888887666778888888888888888886
Q ss_pred cCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccC
Q 001974 95 EIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQ 174 (988)
Q Consensus 95 ~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 174 (988)
..+..|+.+++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 67 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 66666777888888888888877666666677777777777777776555555666666666666666666544444555
Q ss_pred ccccccccccccccc
Q 001974 175 LKELKSLGLGANNLS 189 (988)
Q Consensus 175 l~~L~~L~L~~N~l~ 189 (988)
+++|++|+|++|.+.
T Consensus 147 l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD 161 (208)
T ss_dssp CTTCCEEECCSCCBC
T ss_pred CCCccEEEecCCCee
Confidence 555555555555444
No 344
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9e-25 Score=247.16 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=94.8
Q ss_pred CCCCEEEccccccc-cccc---cccccccccceeecCCCCCC--c---cCchhhhhhcccccceeccccccc----CCCc
Q 001974 400 SILSELLLNNNSLS-GVIP---SCLGSLKQLAILHLFENGLN--G---TIPEEIFNLTYLSNSLNLARNHLV----GSIP 466 (988)
Q Consensus 400 ~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~L~l~~N~l~--~---~~p~~~~~l~~l~~~L~ls~N~l~----~~~p 466 (988)
++|++|+|++|+++ +.+| ..+..+++|+.|+|++|+++ | .+|..+..++.| +.|+|++|.++ +.+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-cEEECcCCCCCcHHHHHHH
Confidence 56666666666665 2333 34556666777777777665 2 233355566666 66777777764 4566
Q ss_pred cccccccccceeecCCcccccc----cCccc--ccCCCCcEEEecCccccc----cCCccc-cCccccCeeecCCCcccC
Q 001974 467 TKIGNLKYLRVFNVSSNNLSGE----IPSQL--GLCSYLEEIYMRGNFFHG----SIPSSL-SSLRAVLAIDLSRNNLSG 535 (988)
Q Consensus 467 ~~~~~l~~L~~L~ls~N~l~~~----~p~~~--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~ 535 (988)
..+..+++|+.|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 7777778888888888888765 55666 337888888888888887 477777 567888888888888887
Q ss_pred cCc
Q 001974 536 LIP 538 (988)
Q Consensus 536 ~~p 538 (988)
..+
T Consensus 318 ~~~ 320 (386)
T 2ca6_A 318 EDD 320 (386)
T ss_dssp TSH
T ss_pred chh
Confidence 775
No 345
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.7e-22 Score=220.13 Aligned_cols=192 Identities=20% Similarity=0.317 Sum_probs=114.0
Q ss_pred cccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcc
Q 001974 329 QLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLN 408 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 408 (988)
+|+.|++++|.+.. ++ .+..+++|+.|++++|++++. +. +..+++|++|+|++|++++ ++ .+..+++|+.|+|+
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence 56777777777663 33 466667777777777776633 33 6666777777777777663 23 46666667777777
Q ss_pred ccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccc
Q 001974 409 NNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGE 488 (988)
Q Consensus 409 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 488 (988)
+|++++. +. +..+++|+.|++++|+++ .++. +..++.| +.|++++|++++ ++. +..+++|+.|++++|++++.
T Consensus 116 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L-~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITDV-TP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNL-QYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTC-CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCc-hh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCc-cEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC
Confidence 7766643 22 666666666666666666 3333 5555555 566666666653 222 55566666666666666532
Q ss_pred cCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcC
Q 001974 489 IPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLI 537 (988)
Q Consensus 489 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 537 (988)
+. +..+++|+.|+|++|++++.. .+..+++|+.|+|++|++++.+
T Consensus 189 -~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 189 -SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp -GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred -hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 22 555566666666666665433 2555556666666666655533
No 346
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.87 E-value=1.7e-22 Score=216.22 Aligned_cols=152 Identities=17% Similarity=0.127 Sum_probs=120.8
Q ss_pred HHHHHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeecccc------------------chhHHHHHHHHHHHhc
Q 001974 656 ESLFKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH------------------GASKSFLAECKALKNI 717 (988)
Q Consensus 656 ~~l~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l 717 (988)
..+......|.+.+.||+|+||.||+|++ .+|+.||+|+++.... .....+.+|+.+++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 34445556677889999999999999999 7899999999964321 1245688999999999
Q ss_pred CCCCceEEEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCC
Q 001974 718 RHRNLVKVITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQ 797 (988)
Q Consensus 718 ~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~ 797 (988)
+|+++..+++. +..++||||+++++|.+ +... +...++.|++.||+|||+.
T Consensus 162 ~~~~v~~~~~~---------~~~~lvmE~~~g~~L~~-l~~~-----------------~~~~i~~qi~~~l~~lH~~-- 212 (282)
T 1zar_A 162 QGLAVPKVYAW---------EGNAVLMELIDAKELYR-VRVE-----------------NPDEVLDMILEEVAKFYHR-- 212 (282)
T ss_dssp TTSSSCCEEEE---------ETTEEEEECCCCEEGGG-CCCS-----------------CHHHHHHHHHHHHHHHHHT--
T ss_pred cCCCcCeEEec---------cceEEEEEecCCCcHHH-cchh-----------------hHHHHHHHHHHHHHHHHHC--
Confidence 85444444322 45699999999999998 4221 2346999999999999998
Q ss_pred CCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccC
Q 001974 798 EPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGL 856 (988)
Q Consensus 798 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 856 (988)
+|+||||||+|||++ ++.+||+|||+|+. +..|+|||++.
T Consensus 213 -giiHrDlkp~NILl~-~~~vkl~DFG~a~~-----------------~~~~~a~e~l~ 252 (282)
T 1zar_A 213 -GIVHGDLSQYNVLVS-EEGIWIIDFPQSVE-----------------VGEEGWREILE 252 (282)
T ss_dssp -TEECSCCSTTSEEEE-TTEEEECCCTTCEE-----------------TTSTTHHHHHH
T ss_pred -CCEeCCCCHHHEEEE-CCcEEEEECCCCeE-----------------CCCCCHHHHHH
Confidence 999999999999999 99999999999962 44578898864
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2e-23 Score=231.58 Aligned_cols=252 Identities=14% Similarity=0.157 Sum_probs=196.8
Q ss_pred CCcEEEeecccCCCCCCchhhhc-cccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCc-cCcccCCCCccCeE
Q 001974 304 NLRTLIFAANKLRGALPHSIANL-SDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGT-IPKEMGKLQNLEGM 381 (988)
Q Consensus 304 ~L~~L~Ls~N~l~~~~p~~~~~~-~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 381 (988)
.++.+++++|.+. |..+..+ ...++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666655 3333333 14688888888888866554 56789999999999998865 77888899999999
Q ss_pred ecccccCCCCCCCCCCCCCCCCEEEcccc-ccccc-cccccccccccceeecCCC-CCCcc-Cchhhhhhc-ccccceec
Q 001974 382 GLYDNQLSGEIPSSLGNLSILSELLLNNN-SLSGV-IPSCLGSLKQLAILHLFEN-GLNGT-IPEEIFNLT-YLSNSLNL 456 (988)
Q Consensus 382 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~-~l~~~L~l 456 (988)
+|++|++++..|..++.+++|++|+|++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ .| ++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEe
Confidence 99999998778888888999999999999 67753 6777888999999999999 88854 677788888 88 89999
Q ss_pred ccc--ccc-CCCccccccccccceeecCCcc-cccccCcccccCCCCcEEEecCcc-ccccCCccccCccccCeeecCCC
Q 001974 457 ARN--HLV-GSIPTKIGNLKYLRVFNVSSNN-LSGEIPSQLGLCSYLEEIYMRGNF-FHGSIPSSLSSLRAVLAIDLSRN 531 (988)
Q Consensus 457 s~N--~l~-~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~ls~N 531 (988)
++| .++ +.+|..+..+++|+.|++++|. +++..+..++.+++|++|+|++|. +.......++.+++|+.|+|++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 454 4567788889999999999999 787888899999999999999996 32222236788999999999999
Q ss_pred cccCcCcccccCC-CCcEEeCCCCcCcccCCCC
Q 001974 532 NLSGLIPKFLEDL-SLEYLNLSFNDLEGEVPTK 563 (988)
Q Consensus 532 ~l~~~~p~~~~~~-~L~~l~l~~N~l~~~~p~~ 563 (988)
++... +..+. .|..|++++|++++..|..
T Consensus 283 -i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 -VPDGT--LQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -SCTTC--HHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred -cCHHH--HHHHHhhCcceEEecccCccccCCc
Confidence 33211 12222 4777889999999988863
No 348
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=7.3e-22 Score=215.18 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=103.9
Q ss_pred cCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCe
Q 001974 301 NCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEG 380 (988)
Q Consensus 301 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 380 (988)
.+++|++|++++|.++ .+| .+..+ ++|+.|++++|++++..+ +..+++|++|+|++|++++ ++ .+..+++|+.
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 4455566666666555 333 23333 246666666666553322 5555666666666666553 22 4555566666
Q ss_pred EecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceeccccc
Q 001974 381 MGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNH 460 (988)
Q Consensus 381 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~ 460 (988)
|+|++|++++ ++. +..+++|++|+|++|++++..+ +..+++|+.|++++|+++ .++. +..++.| +.|++++|+
T Consensus 112 L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L-~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP-LANLSKL-TTLKADDNK 184 (308)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTC-CEEECCSSC
T ss_pred EECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh-hcCCCCC-CEEECCCCc
Confidence 6666666553 222 5555666666666666654332 555556666666666655 3333 5555555 556666666
Q ss_pred ccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCcccc
Q 001974 461 LVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFH 510 (988)
Q Consensus 461 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 510 (988)
+++..+ +..+++|+.|+|++|++++.. .+..+++|+.|+|++|+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 653322 555556666666666665332 2555566666666666655
No 349
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=6.9e-23 Score=239.17 Aligned_cols=207 Identities=24% Similarity=0.277 Sum_probs=148.0
Q ss_pred cccCCCCCCCCCc-----eeeee-EEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCC
Q 001974 8 GILNSWNDSGHFC-----EWKGI-TCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFR 81 (988)
Q Consensus 8 ~~~~~w~~~~~~c-----~~~~v-~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 81 (988)
+.+.+|..+.+.| .|.++ .|. ..+++.|+|++|++++ +|..+. ++|++|+|++|+|+ .+| ..+++
T Consensus 31 ~~l~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 31 SAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHHHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCC
Confidence 3577898788888 79999 785 3578899999999986 777664 78999999999999 566 45788
Q ss_pred CcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccc
Q 001974 82 LEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAA 161 (988)
Q Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (988)
|++|+|++|+|++ +|. |.. +|++|+|++|+|++ +|. .+++|++|+|++|.|++ +|. .+++|++|+|++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 9999999999985 776 665 88999999999885 554 57888888888888885 555 567888888888
Q ss_pred cccCCCCCccccCcccccccccccccccCccchhhccccCc-------cEEEeccCCCCCCCCCcccccCCCCcceeccc
Q 001974 162 NAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLL-------ANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHH 234 (988)
Q Consensus 162 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L-------~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~ 234 (988)
|+|++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..++. +++|+.|+|++
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~ 239 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILED 239 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeC
Confidence 88875 555 55 77888888888877 4444 443 45 56666666665 45554442 55555555555
Q ss_pred cccccccCccc
Q 001974 235 NFFSGSIPISL 245 (988)
Q Consensus 235 N~l~~~~p~~l 245 (988)
|.+++.+|..+
T Consensus 240 N~l~~~~p~~l 250 (571)
T 3cvr_A 240 NPLSSRIRESL 250 (571)
T ss_dssp SSCCHHHHHHH
T ss_pred CcCCCcCHHHH
Confidence 55544444333
No 350
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.2e-21 Score=217.81 Aligned_cols=240 Identities=20% Similarity=0.206 Sum_probs=163.0
Q ss_pred cEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccC-cccCCCCccCe-Eec
Q 001974 306 RTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIP-KEMGKLQNLEG-MGL 383 (988)
Q Consensus 306 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~L 383 (988)
++++.++++++ .+|..+ ++.+++|+|++|+|+...+..|..+++|++|+|++|++.+.+| ..|.++++|.. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 677655 3468888888888886555678888888888888888865555 46778877664 666
Q ss_pred ccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCC-CCCCccCch-hhhhhcccccceecccccc
Q 001974 384 YDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFE-NGLNGTIPE-EIFNLTYLSNSLNLARNHL 461 (988)
Q Consensus 384 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~-~~~~l~~l~~~L~ls~N~l 461 (988)
++|+++...|..|..+++|++|++++|++++..+..+....++..|++++ |++. .+|. .+..+...++.|+|++|+|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 77888877778888888888888888888877776777777777888755 5565 5554 4445554446777888887
Q ss_pred cCCCccccccccccceeecCC-cccccccC-cccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcc
Q 001974 462 VGSIPTKIGNLKYLRVFNVSS-NNLSGEIP-SQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPK 539 (988)
Q Consensus 462 ~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 539 (988)
+ .+|.......+|+.|++++ |.++ .+| ..|..+++|+.|+|++|+|+...+..|.+|++|+.+++ +++ ..+|.
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l-~~lP~ 241 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPT 241 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTC-CCCCC
T ss_pred c-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCc-CcCCC
Confidence 7 4444444556677777764 5555 454 45677777888888888777443344454444444333 223 34455
Q ss_pred cccCCCCcEEeCCCCc
Q 001974 540 FLEDLSLEYLNLSFND 555 (988)
Q Consensus 540 ~~~~~~L~~l~l~~N~ 555 (988)
...+.+|+.++++++.
T Consensus 242 l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 242 LEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTCCSCCEEECSCHH
T ss_pred chhCcChhhCcCCCCc
Confidence 5666677777776553
No 351
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.8e-23 Score=228.43 Aligned_cols=233 Identities=16% Similarity=0.180 Sum_probs=185.7
Q ss_pred CCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccC-CCccccCCCcceEEEeeCccCCCccCcccCCCCccCeE
Q 001974 303 SNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGS-IPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGM 381 (988)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 381 (988)
++++.|++++|.+.+..+. ++.+ ++|++|++++|.+++. ++..+..+++|++|+|++|++++..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 5666777777776655444 3333 4688888888887755 67778888999999999999988888888999999999
Q ss_pred ecccc-cCCCC-CCCCCCCCCCCCEEEcccc-ccccc-ccccccccc-ccceeecCCC--CCC-ccCchhhhhhcccccc
Q 001974 382 GLYDN-QLSGE-IPSSLGNLSILSELLLNNN-SLSGV-IPSCLGSLK-QLAILHLFEN--GLN-GTIPEEIFNLTYLSNS 453 (988)
Q Consensus 382 ~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~-~L~~L~l~~N--~l~-~~~p~~~~~l~~l~~~ 453 (988)
+|++| .+++. ++..+.++++|++|+|++| .+++. ++..+..++ +|+.|++++| .++ +.+|..+..++.| +.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L-~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL-VH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC-SE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC-CE
Confidence 99999 67752 5666788999999999999 88864 677788999 9999999999 555 4678888889998 99
Q ss_pred eeccccc-ccCCCccccccccccceeecCCcc-cccccCcccccCCCCcEEEecCccccccCCccccCc-cccCeeecCC
Q 001974 454 LNLARNH-LVGSIPTKIGNLKYLRVFNVSSNN-LSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSL-RAVLAIDLSR 530 (988)
Q Consensus 454 L~ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~ls~ 530 (988)
|++++|. +++..+..+..+++|+.|++++|. +.......++.+++|+.|++++| ++ ...+..+ .+|..|++++
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINC 302 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESC
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEec
Confidence 9999999 777788899999999999999995 33333336889999999999999 32 2345555 3588999999
Q ss_pred CcccCcCccccc
Q 001974 531 NNLSGLIPKFLE 542 (988)
Q Consensus 531 N~l~~~~p~~~~ 542 (988)
|++++..|....
T Consensus 303 n~l~~~~~~~~~ 314 (336)
T 2ast_B 303 SHFTTIARPTIG 314 (336)
T ss_dssp CCSCCTTCSSCS
T ss_pred ccCccccCCccc
Confidence 999999887643
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.7e-21 Score=227.34 Aligned_cols=189 Identities=25% Similarity=0.348 Sum_probs=116.2
Q ss_pred CCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEec
Q 001974 304 NLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGL 383 (988)
Q Consensus 304 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 383 (988)
+|+.|+|++|++++ +|..++ ++|+.|+|++|+|+ .+| ..+++|+.|+|++|+|++ +|. +.+ +|+.|+|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 56666666666663 554442 35666666666666 445 335667777777777764 555 444 6777777
Q ss_pred ccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccC
Q 001974 384 YDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVG 463 (988)
Q Consensus 384 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~ 463 (988)
++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. +. +.| +.|+|++|+|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L-~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL-EALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC-CEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC-CEEECcCCCCC-
Confidence 7777764 444 45667777777777664 443 45666667777776663 555 33 444 66666666666
Q ss_pred CCcccccccccc-------ceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccc
Q 001974 464 SIPTKIGNLKYL-------RVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRA 522 (988)
Q Consensus 464 ~~p~~~~~l~~L-------~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 522 (988)
.+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..+..+..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 4554 443 45 67777777777 56666666777777777777777666666665543
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.6e-21 Score=196.31 Aligned_cols=160 Identities=22% Similarity=0.182 Sum_probs=76.5
Q ss_pred cceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecC
Q 001974 353 GLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLF 432 (988)
Q Consensus 353 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 432 (988)
+|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555554333344555555555555555554434444555555555555555554444444555555555555
Q ss_pred CCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCcccccc
Q 001974 433 ENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGS 512 (988)
Q Consensus 433 ~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 512 (988)
+|++++..+..+..++.| +.|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQL-KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcC-CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 555542222223334444 444444444443333334445555555555554442 233455555555555555
Q ss_pred CCccccCc
Q 001974 513 IPSSLSSL 520 (988)
Q Consensus 513 ~p~~~~~l 520 (988)
+|.+++.+
T Consensus 181 ip~~~~~l 188 (208)
T 2o6s_A 181 VRNSAGSV 188 (208)
T ss_dssp BBCTTSSB
T ss_pred eeccCccc
Confidence 55555444
No 354
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=5e-21 Score=198.83 Aligned_cols=163 Identities=28% Similarity=0.265 Sum_probs=138.0
Q ss_pred CCCCCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCC
Q 001974 13 WNDSGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDL 92 (988)
Q Consensus 13 w~~~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 92 (988)
|..+++.|+|.+|.|. +++++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|
T Consensus 12 ~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCR------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEcc------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 4457889999999996 33444 5555444 8899999999999988899999999999999999999
Q ss_pred CCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccc
Q 001974 93 VGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSL 172 (988)
Q Consensus 93 ~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 172 (988)
+...+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 8666677899999999999999999777778889999999999999998 678888888899999999998887777778
Q ss_pred cCcccccccccccccccCc
Q 001974 173 GQLKELKSLGLGANNLSGI 191 (988)
Q Consensus 173 ~~l~~L~~L~L~~N~l~~~ 191 (988)
..+++|+.|+|++|.+.+.
T Consensus 156 ~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTCTTCCEEECTTSCBCTT
T ss_pred hCCCCCCEEEeeCCCccCC
Confidence 8888888888888888743
No 355
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.4e-20 Score=193.96 Aligned_cols=151 Identities=23% Similarity=0.281 Sum_probs=129.1
Q ss_pred EEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccc
Q 001974 37 LNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKL 116 (988)
Q Consensus 37 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i 116 (988)
+++++++++ .+|..+. ++|++|+|++|+|+++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 444567777 5666554 6899999999999988888999999999999999999988899999999999999999999
Q ss_pred cCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccC
Q 001974 117 MGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSG 190 (988)
Q Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 190 (988)
+...+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 97777778889999999999999988778888888888888888888887777778888888888888888763
No 356
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=2e-20 Score=208.82 Aligned_cols=175 Identities=20% Similarity=0.206 Sum_probs=140.7
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccC-CCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcc
Q 001974 36 VLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFG-RLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRN 114 (988)
Q Consensus 36 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 114 (988)
.+++++++++ .+|..+. +.+++|+|++|+|++..+..|. ++++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5677888888 5666554 4589999999999988888887 8999999999999999777788999999999999999
Q ss_pred cccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccc---cCcccccccccccccccCc
Q 001974 115 KLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSL---GQLKELKSLGLGANNLSGI 191 (988)
Q Consensus 115 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~ 191 (988)
+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|+...+..| ..+++|+.|+|++|+|+.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9987777788899999999999999987778888888889999998888886555555 5677888888888888766
Q ss_pred cchhhccccCc--cEEEeccCCCC
Q 001974 192 IPPSIYNLSLL--ANFSVPRNQFH 213 (988)
Q Consensus 192 ~~~~l~~l~~L--~~L~L~~N~i~ 213 (988)
.+..+..++.+ +.|+|++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 66666666653 56666666654
No 357
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=189.83 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=130.9
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCC-cccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcc
Q 001974 36 VLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIP-REFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRN 114 (988)
Q Consensus 36 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 114 (988)
.+++++|+++ .+|..+. +.+++|+|++|+|++..| ..|..+++|++|+|++|+|++..+..|+.+++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5677788887 4676654 356899999999997755 45889999999999999999777788999999999999999
Q ss_pred cccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCc
Q 001974 115 KLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGI 191 (988)
Q Consensus 115 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 191 (988)
+|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99988888899999999999999999988888888999999999999999877788888888888888888888753
No 358
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.8e-19 Score=185.69 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=128.7
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccc
Q 001974 59 REINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRN 138 (988)
Q Consensus 59 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 138 (988)
+.+++++++++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|.+|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57899999998 6676654 68999999999999777778999999999999999998888888999999999999999
Q ss_pred cccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCC
Q 001974 139 NLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFH 213 (988)
Q Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~ 213 (988)
+|+...+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 998666667888888888888888888877888888888888888888888777777877888888888877775
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.1e-19 Score=196.16 Aligned_cols=183 Identities=26% Similarity=0.369 Sum_probs=110.6
Q ss_pred cCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccC
Q 001974 39 LRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMG 118 (988)
Q Consensus 39 l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~ 118 (988)
+..+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|+|++|++++..+ ++.+++|++|+|++|++++
T Consensus 31 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 31 LKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp TTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred hcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC
Confidence 4444444322 234566777777777777633 3 36667777777777777774433 6777777777777777763
Q ss_pred CCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhcc
Q 001974 119 SIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYN 198 (988)
Q Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 198 (988)
++ .+..+++|++|+|++|++++. +.+..+++|++|++++|++++. ..++.+++|++|+|++|++++..+ +..
T Consensus 105 -~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 105 -LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 22 366667777777777776642 3466666667777766666643 456666666666666666664433 666
Q ss_pred ccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccc
Q 001974 199 LSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFS 238 (988)
Q Consensus 199 l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~ 238 (988)
+++|+.|++++|+++ .+|. +..+++|+.|++++|+++
T Consensus 177 l~~L~~L~L~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 177 LTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEEEEEE
T ss_pred CCccCEEECCCCcCC-CChh--hccCCCCCEEECcCCccc
Confidence 666666666666665 3332 334455555555555444
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1e-19 Score=203.15 Aligned_cols=177 Identities=21% Similarity=0.190 Sum_probs=145.4
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccc-cCCCCceeecCcccccCCCcccccCccccccccccc
Q 001974 59 REINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLS-YCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 59 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 137 (988)
+.+++++|+|+ .+|..+. ..++.|+|++|+|++..+..|. .+++|++|+|++|+|+++.+.+|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 58999999999 5776653 4689999999999977777787 899999999999999988888899999999999999
Q ss_pred ccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhh---ccccCccEEEeccCCCCC
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSI---YNLSLLANFSVPRNQFHG 214 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~i~~ 214 (988)
|+|+...+..|.++++|++|+|++|+|+...|..|.++++|+.|+|++|+|+.+.+..| ..+++|+.|+|++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 99987777788999999999999999987778889999999999999999986555555 56788888888888887
Q ss_pred CCCCcccccCCC--Ccceecccccccc
Q 001974 215 SLPPSLGLTLPH--LRLFQVHHNFFSG 239 (988)
Q Consensus 215 ~lp~~~~~~l~~--L~~L~L~~N~l~~ 239 (988)
.+|...+..++. ++.|+|++|.+.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 677666656665 3667777777664
No 361
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2e-19 Score=194.09 Aligned_cols=190 Identities=22% Similarity=0.340 Sum_probs=125.1
Q ss_pred ccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccc
Q 001974 330 LQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNN 409 (988)
Q Consensus 330 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 409 (988)
+..+.+..+.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|+.|+|++|++++..+ +.++++|+.|+|++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 444556666665432 24567778888888888873 34 37777888888888888875443 77788888888888
Q ss_pred cccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCccccccc
Q 001974 410 NSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEI 489 (988)
Q Consensus 410 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 489 (988)
|++++ +| .+..+++|+.|++++|+++ .+ +.+..++.| +.|++++|++++. ..+..+++|+.|+|++|++++..
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~-~~-~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCC-CC-hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 88775 33 3777778888888888776 33 345666666 6677777766643 45666666666666666666433
Q ss_pred CcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCc
Q 001974 490 PSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGL 536 (988)
Q Consensus 490 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 536 (988)
| +..+++|+.|+|++|.+++ +| .+..+++|+.|++++|+++..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 3 6666666666666666663 33 366666666666666666553
No 362
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=8.5e-22 Score=231.57 Aligned_cols=207 Identities=18% Similarity=0.174 Sum_probs=124.8
Q ss_pred CCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCccc-------------ccCCCcccccCcccccccc-cccccccC
Q 001974 77 GRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNK-------------LMGSIPFEFFSLYKLKQLA-MQRNNLTG 142 (988)
Q Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-------------i~~~~~~~~~~l~~L~~L~-L~~N~l~~ 142 (988)
..+++|+.|+|++|+|+ .+|..++.+++|+.|++++|. +.+..|..+.++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34566666666666665 566666666666666665553 3445666677777777777 5555442
Q ss_pred CCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccc
Q 001974 143 GIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGL 222 (988)
Q Consensus 143 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~ 222 (988)
.|+.+.+++|.++...+ ..|+.|+|++|+|++ +|. +..+++|+.|+|++|+|+ .+|..+.
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~- 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA- 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-
Confidence 44455555555542211 135666666666664 343 666666666666666666 5655433
Q ss_pred cCCCCcceeccccccccccCcccccCCcccEEEeccccccCcc-cccccCCccccEEecccccCCCCCCCchhhhccccc
Q 001974 223 TLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKL-SVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLAN 301 (988)
Q Consensus 223 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 301 (988)
.+++|+.|+|++|+|++ +| .+..+++|+.|++++|++++.. |..|..+++|+.|+|++|.+++.++.... .+..
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---l~~~ 558 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER---LAEM 558 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH---HHHH
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH---HHHH
Confidence 56666666666666665 34 5666677777777777777665 66677777777777777777665543211 2334
Q ss_pred CCCCcEEEe
Q 001974 302 CSNLRTLIF 310 (988)
Q Consensus 302 l~~L~~L~L 310 (988)
+++|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 677777753
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=182.43 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=74.9
Q ss_pred eEecccccCCCCCCCCCCCCCCCCEEEccccccccccc-cccccccccceeecCCCCCCccCchhhhhhcccccceeccc
Q 001974 380 GMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIP-SCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLAR 458 (988)
Q Consensus 380 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~ 458 (988)
.+++++|.++ .+|..+. ..++.|+|++|+|++..| ..|..+++|+.|+|++|+|++..+..+.+++.| ++|+|++
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-NEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-CEEECCC
Confidence 4444444444 2333332 223445555555544322 234445555555555555543222233444444 4444444
Q ss_pred ccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCc
Q 001974 459 NHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGL 536 (988)
Q Consensus 459 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 536 (988)
|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 444434444455555555555555555555555555555555555555555555555555555555555555555543
No 364
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=9.6e-20 Score=215.28 Aligned_cols=194 Identities=22% Similarity=0.324 Sum_probs=154.8
Q ss_pred cccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcc
Q 001974 329 QLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLN 408 (988)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 408 (988)
.+..+.+..+.+....+ +..+++|+.|++++|.|. .++ .+..+++|+.|+|++|+|++..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 45667777787775443 567888999999999988 444 58888999999999999986544 8889999999999
Q ss_pred ccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccc
Q 001974 409 NNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGE 488 (988)
Q Consensus 409 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 488 (988)
+|+|++ +| .+..+++|+.|+|++|++. .+ +.+..++.| +.|+|++|++++. ..+..+++|+.|+|++|+|++.
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCC-CC-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 999885 33 6888899999999999987 44 457788888 8888888888854 5688888888888888888866
Q ss_pred cCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCCcccCcCcc
Q 001974 489 IPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPK 539 (988)
Q Consensus 489 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 539 (988)
.| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++++.+..
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 55 88888888888888888853 4588888888888888888876543
No 365
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=4.7e-20 Score=223.81 Aligned_cols=246 Identities=20% Similarity=0.183 Sum_probs=121.4
Q ss_pred cCCCC-CCCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCC-----EEEcCCCcccccCCcccCCCCCCc
Q 001974 10 LNSWN-DSGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLR-----EINLMNNSIQGEIPREFGRLFRLE 83 (988)
Q Consensus 10 ~~~w~-~~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~-----~L~L~~n~l~~~~p~~~~~l~~L~ 83 (988)
-..|. ..+..+.|.++.++ ..+++.|+|.+|++.. ++..+.....|+ .++++.|.+. ..|+.|..+.+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~ 227 (727)
T 4b8c_D 152 KQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWH 227 (727)
T ss_dssp --------------------------------------------------------------------------CCCCCC
T ss_pred cCCCcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCc
Confidence 34553 34556789888886 4689999999999985 444443333222 2334445555 5688899999999
Q ss_pred EEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccc
Q 001974 84 ALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANA 163 (988)
Q Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (988)
.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|.+|++|++|+|++|+|+ .+|..|++|++|++|+|++|.
T Consensus 228 ~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 228 ALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp EEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC
T ss_pred EEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC
Confidence 9999999999 78888889999999999999998 88889999999999999999999 779999999999999999999
Q ss_pred cCCCCCccccCcccccccccccccccCccchhhccccCc-cEEEeccCCCCCCCCCcccccCCCCcceeccccccccccC
Q 001974 164 FGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLL-ANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIP 242 (988)
Q Consensus 164 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L-~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p 242 (988)
|+ .+|..|++|++|++|+|++|.|++.+|..+..+... ..|+|++|.+.+.+|. .|+.|++++|... -
T Consensus 305 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~---~ 373 (727)
T 4b8c_D 305 VT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTDGEP---Q 373 (727)
T ss_dssp CC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C----------------
T ss_pred CC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeeccccc---c
Confidence 98 678789999999999999999998888888765332 3467888888766664 3455666665110 0
Q ss_pred cccccCCcccEEEeccccccCcccccccCCccccEEecccccCC
Q 001974 243 ISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLG 286 (988)
Q Consensus 243 ~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 286 (988)
.. .+.+.+..+..+..+..+....+++|.+.
T Consensus 374 ~~-------------~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 374 RE-------------YDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------------------------------CCC
T ss_pred cc-------------cCCccccccchhhcccccceeeeeccccc
Confidence 01 11223333344555666667777777664
No 366
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=8.4e-22 Score=231.59 Aligned_cols=119 Identities=22% Similarity=0.280 Sum_probs=69.3
Q ss_pred cceeecCCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEec
Q 001974 426 LAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMR 505 (988)
Q Consensus 426 L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~ 505 (988)
|+.|+|++|+|+ .+|. +..++.| +.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .|+.+++|+.|+|+
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCC-CCcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 555666666665 3554 5555555 56666666665 555566666666666666666663 44 55666666666666
Q ss_pred CccccccC-CccccCccccCeeecCCCcccCcCcccc----cCCCCcEEe
Q 001974 506 GNFFHGSI-PSSLSSLRAVLAIDLSRNNLSGLIPKFL----EDLSLEYLN 550 (988)
Q Consensus 506 ~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~~----~~~~L~~l~ 550 (988)
+|+|++.. |..|+.+++|+.|+|++|+|++.+|... .+++|+.||
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 66666554 6666666666666666666666555431 144555554
No 367
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.1e-19 Score=212.41 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=159.0
Q ss_pred CCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEe
Q 001974 303 SNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMG 382 (988)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 382 (988)
..+..+.++.+.+.+..+ +..+ +.|+.|++++|.+.. ++ .+..+++|+.|+|++|+|++..| +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345555666777764444 2333 478999999999884 44 58889999999999999986544 88899999999
Q ss_pred cccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhcccccceeccccccc
Q 001974 383 LYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLV 462 (988)
Q Consensus 383 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~ 462 (988)
|++|+|++ +| .+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++++ + ..+..++.| +.|+|++|+++
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKL-DTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTC-SEEECCSSCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhcccCCC-CEEECcCCcCC
Confidence 99999984 44 688899999999999999863 358889999999999999984 4 677888888 89999999998
Q ss_pred CCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCcccc
Q 001974 463 GSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAV 523 (988)
Q Consensus 463 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 523 (988)
+..| +..+++|+.|+|++|+|++ + +.+..+++|+.|+|++|++.+.....+..+..+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~ 223 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred Cchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence 6656 8889999999999999985 4 468889999999999999986544444444333
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.2e-18 Score=180.88 Aligned_cols=152 Identities=23% Similarity=0.276 Sum_probs=118.9
Q ss_pred CCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccccccccc
Q 001974 58 LREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 58 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 137 (988)
-+.++.++++++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|+...+..|.++++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 357888888888 5666553 7888888888888877788888888888888888888766667778888888888888
Q ss_pred ccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCC
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFH 213 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~ 213 (988)
|+|++..+..|..+++|++|+|++|+|+ .+|..+.++++|++|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888666667788888888888888887 56777777788888888888777666666777777777777777765
No 369
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.77 E-value=7.5e-19 Score=185.78 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=107.1
Q ss_pred CCCCCceeccccceeEEEEEECCCCeE--EEEEEeeccccc------------------------hhHHHHHHHHHHHhc
Q 001974 664 GFSSTHLIGMGSFGSVYKGAFDQDGTI--VAIKVFNLQRHG------------------------ASKSFLAECKALKNI 717 (988)
Q Consensus 664 ~y~~~~~lg~G~~g~Vy~a~~~~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l 717 (988)
-|++.+.||+|+||.||+|.+..+|+. ||||+++..... ....+.+|+.++.++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999999668999 999997543111 013678999999999
Q ss_pred CCCCc--eEEEeecccccccCCCceEEEEeeccc-c----chhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHH
Q 001974 718 RHRNL--VKVITSCSSIDFQGNDFKALVYEFMTN-G----SLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAID 790 (988)
Q Consensus 718 ~h~ni--v~~~~~~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~ 790 (988)
.|+++ ..++++ +..++||||+.+ | +|.++.. ..++.++..++.|++.||.
T Consensus 128 ~~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~--------------~~~~~~~~~i~~qi~~~l~ 184 (258)
T 1zth_A 128 KEAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGR--------------ELKELDVEGIFNDVVENVK 184 (258)
T ss_dssp HHTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGG--------------GGGGSCHHHHHHHHHHHHH
T ss_pred HhCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhh--------------ccChHHHHHHHHHHHHHHH
Confidence 88753 444443 356899999942 3 5665532 1224457789999999999
Q ss_pred HHH-cCCCCCeEeccCCCCCeeeCCCCcEEEeeecccccc
Q 001974 791 YLH-HHCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVR 829 (988)
Q Consensus 791 ~LH-~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 829 (988)
||| +. +||||||||+|||+++ .++|+|||+|...
T Consensus 185 ~lH~~~---givHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 185 RLYQEA---ELVHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp HHHHTS---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred HHHHHC---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 999 88 9999999999999998 9999999999754
No 370
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.2e-19 Score=220.37 Aligned_cols=119 Identities=29% Similarity=0.295 Sum_probs=46.4
Q ss_pred CccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccccccccccccc
Q 001974 345 PSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLK 424 (988)
Q Consensus 345 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 424 (988)
++.+..++.|+.|+|++|++. .+|..+.++++|++|+|++|.|+ .+|..|+++++|+.|+|++|+|+ .+|..|+.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 333444444444444444444 33333334444444444444444 33433444444444444444444 3343444444
Q ss_pred ccceeecCCCCCCccCchhhhhhcccccceecccccccCCCccc
Q 001974 425 QLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTK 468 (988)
Q Consensus 425 ~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~ 468 (988)
+|+.|+|++|.|+ .+|..+..++.| +.|+|++|.|++.+|..
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNL-QFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTC-CCEECTTSCCCSHHHHH
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCc-cEEeCCCCccCCCChHH
Confidence 4444444444443 333333333333 33444444443333333
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=4.1e-19 Score=188.41 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=88.5
Q ss_pred CcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeec
Q 001974 352 VGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHL 431 (988)
Q Consensus 352 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 431 (988)
.++..+++++|.+++ ++ .+..+++|+.|++++|+++ .+| .+..+++|+.|+|++|+|++..+ +..+++|+.|+|
T Consensus 19 ~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 344444455555542 22 3444555555555555555 233 35555555555555555554333 555555555555
Q ss_pred CCCCCCccCchhhhhhcccccceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccc
Q 001974 432 FENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHG 511 (988)
Q Consensus 432 ~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 511 (988)
++|+++ .+|.... +.| +.|++++|++++ ++ .+..+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++
T Consensus 93 ~~N~l~-~l~~~~~--~~L-~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS--ACL-SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCS-CCTTCCC--SSC-CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCccC-CcCcccc--Ccc-cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 555555 2333221 333 455555555543 22 35555666666666666663 33 45566666666666666664
Q ss_pred cCCccccCccccCeeecCCCcccCcC
Q 001974 512 SIPSSLSSLRAVLAIDLSRNNLSGLI 537 (988)
Q Consensus 512 ~~p~~~~~l~~L~~L~ls~N~l~~~~ 537 (988)
. ..+..+++|+.|++++|.+++.+
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h--HHhccCCCCCEEeCCCCcccCCc
Confidence 4 44555666666666666665543
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.6e-18 Score=172.87 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=91.4
Q ss_pred cCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccce
Q 001974 349 GNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAI 428 (988)
Q Consensus 349 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 428 (988)
..+++|+.|++++|+++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..|+.+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45566777777777776 445 4666777777777777554 2235666777777777777777666666777777777
Q ss_pred eecCCCCCCccCchhhhhhcccccceeccccc-ccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCc
Q 001974 429 LHLFENGLNGTIPEEIFNLTYLSNSLNLARNH-LVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGN 507 (988)
Q Consensus 429 L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N 507 (988)
|++++|++++..|..+..++.| ++|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L-~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKV-NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSC-CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCC-CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 7777777765555555555555 555555555 32 333 35555555555555555553 33 4455555555555555
Q ss_pred ccc
Q 001974 508 FFH 510 (988)
Q Consensus 508 ~l~ 510 (988)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 544
No 373
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.3e-18 Score=184.48 Aligned_cols=164 Identities=23% Similarity=0.239 Sum_probs=101.8
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcc
Q 001974 35 TVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRN 114 (988)
Q Consensus 35 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 114 (988)
+.++++.+.++... .+..+++|++|++++|+|+ .+| .+..+++|++|+|++|+|++..| |+.+++|++|+|++|
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 34556666666333 4666677777777777776 344 56667777777777777764333 666777777777777
Q ss_pred cccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccch
Q 001974 115 KLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPP 194 (988)
Q Consensus 115 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 194 (988)
++++. |.. .. ++|++|+|++|++++. +.+..+++|++|+|++|++++. + .+..+++|++|+|++|+|++. .
T Consensus 96 ~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 96 RLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp CCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred ccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 77643 222 22 6666777777766642 2466666666666666666643 2 466666666666666666644 4
Q ss_pred hhccccCccEEEeccCCCC
Q 001974 195 SIYNLSLLANFSVPRNQFH 213 (988)
Q Consensus 195 ~l~~l~~L~~L~L~~N~i~ 213 (988)
.+..+++|+.|++++|.+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCccc
Confidence 5666666666666666665
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2.4e-18 Score=174.11 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=79.8
Q ss_pred CCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhccccc
Q 001974 373 GKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSN 452 (988)
Q Consensus 373 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~ 452 (988)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|+.|++++|++++..|..+..++.| +
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-T 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-C
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC-C
Confidence 55566777777777776 445 46667777777777775542 2356666666666666666654444444444444 4
Q ss_pred ceecccccccCCCccccccccccceeecCCcc-cccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCC
Q 001974 453 SLNLARNHLVGSIPTKIGNLKYLRVFNVSSNN-LSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRN 531 (988)
Q Consensus 453 ~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 531 (988)
+|++++|++++..|..++.+++|+.|++++|+ ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 45555555544444444444444444444444 33 333 34444444444444444442 22 3444444444444444
Q ss_pred cc
Q 001974 532 NL 533 (988)
Q Consensus 532 ~l 533 (988)
++
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 43
No 375
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1e-17 Score=168.58 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=49.2
Q ss_pred cceecccccccCCCccccccccccceeecCCcccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCCC
Q 001974 452 NSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSRN 531 (988)
Q Consensus 452 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 531 (988)
++|+|++|++++..|..|..+++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 34444444444444455555555566666666666555555556666666666666666655666666666666666666
Q ss_pred cccCcCc
Q 001974 532 NLSGLIP 538 (988)
Q Consensus 532 ~l~~~~p 538 (988)
.+++..+
T Consensus 137 ~l~c~c~ 143 (192)
T 1w8a_A 137 PFNCNCH 143 (192)
T ss_dssp CBCCSGG
T ss_pred CccCcCc
Confidence 6665444
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=6.9e-18 Score=169.81 Aligned_cols=157 Identities=22% Similarity=0.229 Sum_probs=127.6
Q ss_pred ceeecCCCCCCccCchhhhhhcccccceecccccccCCCcc-ccccccccceeecCCcccccccCcccccCCCCcEEEec
Q 001974 427 AILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIPT-KIGNLKYLRVFNVSSNNLSGEIPSQLGLCSYLEEIYMR 505 (988)
Q Consensus 427 ~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~ 505 (988)
+.+++++|+++ .+|..+.. .+ +.|++++|++++..+. .|+.+++|++|+|++|+|++..|..|+.+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67788888885 77776544 45 7888888888866554 48999999999999999999889999999999999999
Q ss_pred CccccccCCccccCccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCcCcccCCCCcccCcccccccccccccCCCC
Q 001974 506 GNFFHGSIPSSLSSLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFNDLEGEVPTKGVFANISRISVAGFNRLCGGI 584 (988)
Q Consensus 506 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~ 584 (988)
+|+|++..|..|..+++|+.|||++|+|++.+|.. ..+++|++|+|++|.+++..+.......+....+.++...|+.|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 99999999999999999999999999999998876 67789999999999999987753211122223445566678766
Q ss_pred CCC
Q 001974 585 PEL 587 (988)
Q Consensus 585 ~~~ 587 (988)
...
T Consensus 167 ~~l 169 (192)
T 1w8a_A 167 SKV 169 (192)
T ss_dssp TTT
T ss_pred hHH
Confidence 543
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.2e-17 Score=183.87 Aligned_cols=289 Identities=11% Similarity=0.047 Sum_probs=148.8
Q ss_pred cccccccccccccccCCCCCcccC-CCccceeeccccccCCCCCccccCcccccccccccccccCccchhhcc-------
Q 001974 127 LYKLKQLAMQRNNLTGGIPPFIGN-LTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYN------- 198 (988)
Q Consensus 127 l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~------- 198 (988)
+.+|++|.++++- ...-...+.. +++|++|+|++|++. .....-+.++.++.+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeE-EecCccccccccccccccccc---cCHHHhccccccccc
Confidence 6677788877642 1111112233 667888888888876 111111222334445555553 33455666
Q ss_pred -ccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEecccc----ccCcccccccCCc
Q 001974 199 -LSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNS----FSGKLSVNFGGMK 273 (988)
Q Consensus 199 -l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~----i~~~~~~~~~~l~ 273 (988)
+++|+.|+|.+ .++ .++...|.++++|+.+++++|.+..+.+.+|.++.++..+.+..+. .......+|.+..
T Consensus 99 g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77777777777 666 6777777777777777777777666666666666666555544421 1223333444444
Q ss_pred ccc-EEecccccCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCC
Q 001974 274 NLS-YFNVAYNNLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLV 352 (988)
Q Consensus 274 ~L~-~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 352 (988)
.|+ .+.+.... .++ ......-....+++.+.+.++-.. .....+....++|+.|+|++|+++.+.+..|..+.
T Consensus 177 ~L~~~i~~~~~~--~l~---~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 177 PLETTIQVGAMG--KLE---DEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp CCEEEEEECTTC--CHH---HHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred ccceeEEecCCC--cHH---HHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 444 23322110 000 000000112334445555443111 11111112223566666666666655555566666
Q ss_pred cceEEEeeCccCCCccCcccCCCCccC-eEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceee
Q 001974 353 GLYRLGMGGNQFTGTIPKEMGKLQNLE-GMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILH 430 (988)
Q Consensus 353 ~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 430 (988)
+|+.|+|.+| ++.+.+..|.++.+|+ .+++.+ +++...+.+|.++++|+.|++++|+++.+.+.+|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666665 5544445566666666 666655 45544455566666666666666666655555666666666554
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=5.2e-17 Score=178.80 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=42.8
Q ss_pred ccCccEEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCccc-EEEeccccccCcccccccCCccccE
Q 001974 199 LSLLANFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLE-FIEALDNSFSGKLSVNFGGMKNLSY 277 (988)
Q Consensus 199 l~~L~~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~l~~N~i~~~~~~~~~~l~~L~~ 277 (988)
+++|+.|+|++|+++ .+|...|.++++|+.++|.+| ++.+.+.+|.++.+|+ .+++.+ +++.+.+.+|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 444555555555544 455555545555555555444 4434444444444454 444444 444444444444444444
Q ss_pred EecccccCCCCCC
Q 001974 278 FNVAYNNLGSGES 290 (988)
Q Consensus 278 L~L~~N~l~~~~~ 290 (988)
++++.|+++.++.
T Consensus 302 l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 302 VLATGDKITTLGD 314 (329)
T ss_dssp EEECSSCCCEECT
T ss_pred EEeCCCccCccch
Confidence 4444444444443
No 379
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=1.4e-16 Score=158.12 Aligned_cols=136 Identities=32% Similarity=0.358 Sum_probs=102.4
Q ss_pred CCCCceeeeeEEeCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCc
Q 001974 16 SGHFCEWKGITCGLRHRRVTVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGE 95 (988)
Q Consensus 16 ~~~~c~~~~v~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 95 (988)
..+.|+|.++.|. +++++ .+|..+. ++|++|+|++|++++..+..|..+++|++|+|++|+|++.
T Consensus 3 ~~C~C~~~~l~~~------------~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (177)
T 2o6r_A 3 SRCSCSGTEIRCN------------SKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67 (177)
T ss_dssp TTCEEETTEEECC------------SSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEeCCCEEEec------------CCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe
Confidence 4566788777775 44555 3444333 6889999999999877777788888899999998888866
Q ss_pred CCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccCC
Q 001974 96 IPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGG 166 (988)
Q Consensus 96 ~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 166 (988)
.+..|+.+++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+.+
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66677888888888888888887666677778888888888888776555556777777777777777664
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=158.93 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=80.1
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCccc
Q 001974 36 VLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNK 115 (988)
Q Consensus 36 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 115 (988)
.+++++++++ .+|..+. ++|++|+|++|+|+ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4556666666 4554443 46777777777776 556667777777777777777776666666666666666666666
Q ss_pred ccCCCcccccCcccccccccccccccCCCCCcccCCCccceeeccccccC
Q 001974 116 LMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFG 165 (988)
Q Consensus 116 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 165 (988)
|++..+.+|.++++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555556666666666666666666444445555566666666555554
No 381
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=6.1e-16 Score=173.72 Aligned_cols=242 Identities=16% Similarity=0.145 Sum_probs=146.4
Q ss_pred CCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccc
Q 001974 55 LSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLA 134 (988)
Q Consensus 55 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 134 (988)
...++.+.+.+ .++.+...+|.+. +|+.+.|.+| ++.+...+|.+ .+|+.+.|.+ .++.+.+.+|.++.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35566666653 4554556667664 6777777666 55455666666 3577777765 55556667777777777777
Q ss_pred cccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCC
Q 001974 135 MQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHG 214 (988)
Q Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~ 214 (988)
|.+|.++.....+|. ..+|+.+.|.++ ++.+...+|.++++|+.++|..| ++.+...+|.+ .+|+.+.+ .+.++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~- 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVT- 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCC-
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCcc-
Confidence 777777755555555 467777777644 55556667777777777777764 45455666666 66777777 34455
Q ss_pred CCCCcccccCCCCcceeccccccc-----cccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCC
Q 001974 215 SLPPSLGLTLPHLRLFQVHHNFFS-----GSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGE 289 (988)
Q Consensus 215 ~lp~~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 289 (988)
.++...|.++++|+.+++.+|.+. .+.+.+|.++.+|+.+++. +.+..+...+|.++++|+.+.+..| ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 566666666667777766666554 2334455555555555555 3355555555555555555555333 43333
Q ss_pred CCchhhhcccccCCCCcEEEeecccCC
Q 001974 290 SDEMSFMNSLANCSNLRTLIFAANKLR 316 (988)
Q Consensus 290 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~ 316 (988)
.. +|.++ +|+.+++++|.+.
T Consensus 339 ~~------aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 339 FS------AFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TT------SSSSS-CCCEEEECCSSCC
T ss_pred HH------hCCCC-CCCEEEEcCCCCc
Confidence 32 34444 5555555555444
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=8.9e-17 Score=158.09 Aligned_cols=132 Identities=23% Similarity=0.205 Sum_probs=76.9
Q ss_pred CCCCEEEcCCCccc-ccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccc
Q 001974 56 SFLREINLMNNSIQ-GEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLA 134 (988)
Q Consensus 56 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 134 (988)
++|++|+|++|+|+ +.+|..|..+++|++|+|++|.+++. ..|+.+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 45565566666666666666666633 5566666666666666666654555555566666666
Q ss_pred cccccccCCC-CCcccCCCccceeeccccccCCCCC---ccccCccccccccccccccc
Q 001974 135 MQRNNLTGGI-PPFIGNLTSLESISLAANAFGGNIP---NSLGQLKELKSLGLGANNLS 189 (988)
Q Consensus 135 L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~ 189 (988)
|++|.+++.. +..+..+++|++|++++|.+++..+ ..|..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665321 1455555566666666665553333 24555555555555555554
No 383
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=157.51 Aligned_cols=128 Identities=24% Similarity=0.327 Sum_probs=108.2
Q ss_pred CEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccc
Q 001974 59 REINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRN 138 (988)
Q Consensus 59 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 138 (988)
+++++++|+|+ .+|..+ .++|++|+|++|+|+ .+|..|..+++|++|+|++|+|++..+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999998 667655 368999999999998 77888999999999999999998888888888999999999999
Q ss_pred cccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccC
Q 001974 139 NLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSG 190 (988)
Q Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 190 (988)
+|++..+..|.++++|++|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8887777788888888888888888887666678888888888888888763
No 384
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=2.2e-15 Score=169.19 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=213.8
Q ss_pred CCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcc
Q 001974 43 GLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPF 122 (988)
Q Consensus 43 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~ 122 (988)
.++.+-..+|.+ .+|+.+.|.++ ++.+...+|.+. +|+.+.+.+ .++...+.+|.++.+|+.++|++|+++.+...
T Consensus 123 ~i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 123 SVKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred ccCEehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 455444556776 47999999877 887778889884 799999996 77767789999999999999999999977777
Q ss_pred cccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCc
Q 001974 123 EFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLL 202 (988)
Q Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 202 (988)
+|. ..+|+.+.|.++ ++.+...+|.++++|+.+++.+| ++.+...+|.+ .+|+.+.| .|.++.+...+|.++++|
T Consensus 199 aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 199 TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL 273 (401)
T ss_dssp TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC
T ss_pred hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC
Confidence 777 589999999855 77677889999999999999976 56577888988 88999999 566777889999999999
Q ss_pred cEEEeccCCCC----CCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEE
Q 001974 203 ANFSVPRNQFH----GSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYF 278 (988)
Q Consensus 203 ~~L~L~~N~i~----~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L 278 (988)
+.+++.+|.+. ..++...|.++++|+.++|. +.++.+...+|.++.+|+.+.+..| +..+...+|.++ +|+.+
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 99999998774 24888999999999999999 4588777889999999999999655 888888999999 99999
Q ss_pred ecccccCCCCCCCchhhhcccccC-CCCcEEEeecccCC
Q 001974 279 NVAYNNLGSGESDEMSFMNSLANC-SNLRTLIFAANKLR 316 (988)
Q Consensus 279 ~L~~N~l~~~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l~ 316 (988)
++++|.+..+... .|..+ .+++.|++..+.+.
T Consensus 351 ~l~~n~~~~l~~~------~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 351 KVEGTTPPQVFEK------VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECCSSCCBCCCS------SCCCSCTTCCEEEECGGGHH
T ss_pred EEcCCCCcccccc------cccCCCCCccEEEeCHHHHH
Confidence 9999998877655 34555 36777777766543
No 385
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3.4e-16 Score=153.91 Aligned_cols=84 Identities=26% Similarity=0.269 Sum_probs=47.0
Q ss_pred CcceEEEeeCccCC-CccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccccccccceee
Q 001974 352 VGLYRLGMGGNQFT-GTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILH 430 (988)
Q Consensus 352 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 430 (988)
++|+.|++++|+++ +.+|..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555555 44555555555566666666655533 4455555555555555555544555555555555555
Q ss_pred cCCCCCC
Q 001974 431 LFENGLN 437 (988)
Q Consensus 431 l~~N~l~ 437 (988)
+++|+++
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 5555554
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.7e-16 Score=152.53 Aligned_cols=127 Identities=22% Similarity=0.164 Sum_probs=83.9
Q ss_pred CCCCEEEcCCCccc-ccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccc
Q 001974 56 SFLREINLMNNSIQ-GEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLA 134 (988)
Q Consensus 56 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 134 (988)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..|+.+++|++|+|++|+|++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56677777777776 56666677777777777777777744 5667777777777777777755666666667777777
Q ss_pred cccccccCC-CCCcccCCCccceeeccccccCCCCC---ccccCcccccccccc
Q 001974 135 MQRNNLTGG-IPPFIGNLTSLESISLAANAFGGNIP---NSLGQLKELKSLGLG 184 (988)
Q Consensus 135 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~ 184 (988)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776642 22556666666666666666664443 355666666666654
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=1.7e-15 Score=150.25 Aligned_cols=132 Identities=21% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccccccccc
Q 001974 58 LREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 58 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 137 (988)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..|+.+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 367888888888 456544 36888888888888866666778888888888888888876667778888888888888
Q ss_pred ccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCcc
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGII 192 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 192 (988)
|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|.+.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8888666667778888888888888887666666677778888888888777543
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=9.6e-16 Score=147.30 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=46.3
Q ss_pred ccCeEecccccCC-CCCCCCCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhhccccccee
Q 001974 377 NLEGMGLYDNQLS-GEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNLTYLSNSLN 455 (988)
Q Consensus 377 ~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ 455 (988)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+|..+..++.+ ++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL-THLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC-CEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC-CEEE
Confidence 4444444444444 34444444444444444444444433 334444455555555555543334333333333 3333
Q ss_pred cccccccCC-CccccccccccceeecCCcccc
Q 001974 456 LARNHLVGS-IPTKIGNLKYLRVFNVSSNNLS 486 (988)
Q Consensus 456 ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~ 486 (988)
+++|++++. .|..++.+++|+.|++++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 333333321 1233344444444444444444
No 389
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.61 E-value=1.8e-15 Score=165.18 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=102.6
Q ss_pred HhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccc--------------hhH--------HHHHHHHHHHhc
Q 001974 660 KATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHG--------------ASK--------SFLAECKALKNI 717 (988)
Q Consensus 660 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~--------------~~~--------~~~~E~~~l~~l 717 (988)
....-|++.+.||+|++|.||+|.+. +|+.||||+++..... ... ...+|...|.++
T Consensus 92 ~rg~iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL 170 (397)
T 4gyi_A 92 ARKDVYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKAL 170 (397)
T ss_dssp HTTSCSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 33345899999999999999999985 7999999998532110 001 123466666666
Q ss_pred CCCCc--eEEEeecccccccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcC
Q 001974 718 RHRNL--VKVITSCSSIDFQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHH 795 (988)
Q Consensus 718 ~h~ni--v~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~ 795 (988)
.+..+ ...+++ ...++||||++|++|.++.... ....++.|++.+|.|||+.
T Consensus 171 ~~~gv~vp~p~~~---------~~~~LVME~i~G~~L~~l~~~~-----------------~~~~l~~qll~~l~~lH~~ 224 (397)
T 4gyi_A 171 YEEGFPVPEPIAQ---------SRHTIVMSLVDALPMRQVSSVP-----------------DPASLYADLIALILRLAKH 224 (397)
T ss_dssp HHTTCSCCCEEEE---------ETTEEEEECCSCEEGGGCCCCS-----------------CHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCeeeec---------cCceEEEEecCCccHhhhcccH-----------------HHHHHHHHHHHHHHHHHHC
Confidence 44332 223332 2347999999999987664321 2346889999999999998
Q ss_pred CCCCeEeccCCCCCeeeCCCC----------cEEEeeeccccccc
Q 001974 796 CQEPVLHCDLKPGNVLLDNDM----------IAHVGDFGLARVRQ 830 (988)
Q Consensus 796 ~~~~ivH~Dlkp~NIll~~~~----------~~kL~DfG~a~~~~ 830 (988)
|||||||||.|||+++++ .+.|+||+-+....
T Consensus 225 ---gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 225 ---GLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp ---TEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred ---CCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccCC
Confidence 999999999999998776 38999999886543
No 390
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.8e-14 Score=162.66 Aligned_cols=316 Identities=13% Similarity=0.066 Sum_probs=148.3
Q ss_pred ccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcccccccccccccccCCCCCc
Q 001974 68 IQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPF 147 (988)
Q Consensus 68 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (988)
++.+-..+|.++.+|+.+.|..+ ++.+-..+|.++++|+.++|.++ ++.+...+|.++.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 34344455656666666666533 44344455666666666666543 44344555666666665555433 22233444
Q ss_pred ccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCC
Q 001974 148 IGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHL 227 (988)
Q Consensus 148 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L 227 (988)
|.++..++....... ......+|.++++|+.+.+.++..+ +...+|.++.+|+.+.+..| ++ .++...|..+..|
T Consensus 136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTC
T ss_pred eecccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ce-EeCchhhcccccc
Confidence 554433332222221 1123345555555666555543322 44555555555555555544 33 4555555555555
Q ss_pred cceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccccCCCCCCCchhhhcccccCCCCcE
Q 001974 228 RLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYNNLGSGESDEMSFMNSLANCSNLRT 307 (988)
Q Consensus 228 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~ 307 (988)
+.+.+..+... +.........|+.+.+.+ .+..+....|.+...++.+.+..+... +... +|..+..++.
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~------~F~~~~~l~~ 280 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLR-IGGS------LFYNCSGLKK 280 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCE-ECSC------TTTTCTTCCE
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCcce-eecc------ccccccccce
Confidence 55555544332 122222334455555432 223334445555555555555544321 1111 2344444544
Q ss_pred EEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEeccccc
Q 001974 308 LIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQ 387 (988)
Q Consensus 308 L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 387 (988)
+....+.+ + ...|....+|+.+.+.++ ++.+...+|.++.+|+.++|.++
T Consensus 281 ~~~~~~~i----~------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 281 VIYGSVIV----P------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EEECSSEE----C------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eccCceee----c------------------------cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence 44433321 1 123444445555555433 33233344555555555555432
Q ss_pred CCCCCCCCCCCCCCCCEEEccccccccccccccccccccceeecC
Q 001974 388 LSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLF 432 (988)
Q Consensus 388 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 432 (988)
++.....+|.++++|+.+.+..| ++.+...+|.++++|+.+++.
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 44333445555555555555444 443444555555555555554
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=5.4e-17 Score=164.30 Aligned_cols=148 Identities=23% Similarity=0.304 Sum_probs=82.8
Q ss_pred CCCccCeEecccccCCCCCCC------CCCCCCCCCEEEccccccccccccccccccccceeecCCCCCCccCchhhhhh
Q 001974 374 KLQNLEGMGLYDNQLSGEIPS------SLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFNL 447 (988)
Q Consensus 374 ~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 447 (988)
....++.++++.|.+++..|. .+..+++|++|+|++|++++ +| .+..+++|+.|++++|+++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 334455555555555555444 55555666666666666654 34 5555666666666666665 555555555
Q ss_pred cccccceecccccccCCCccccccccccceeecCCcccccccC-cccccCCCCcEEEecCccccccCCcc----------
Q 001974 448 TYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIP-SQLGLCSYLEEIYMRGNFFHGSIPSS---------- 516 (988)
Q Consensus 448 ~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~---------- 516 (988)
+.+ ++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 93 ~~L-~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 93 DTL-EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHC-SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CcC-CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 555 566666666653 33 45556666666666666663221 35556666666666666665554432
Q ss_pred ccCccccCeee
Q 001974 517 LSSLRAVLAID 527 (988)
Q Consensus 517 ~~~l~~L~~L~ 527 (988)
+..+++|+.||
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 44555555554
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=2.1e-15 Score=149.40 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=89.7
Q ss_pred ccccCCCCCCEEEcCCCcccccCCcccCCCC-CCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCcc
Q 001974 50 PYIGNLSFLREINLMNNSIQGEIPREFGRLF-RLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLY 128 (988)
Q Consensus 50 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 128 (988)
+.+...++|++|+|++|+|+. +|. +..+. +|++|+|++|+|++. ..|+.+++|++|+|++|+|++..+..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 345566777777777777773 443 44443 777777777777743 5677777777777777777755445556777
Q ss_pred cccccccccccccCCCCC--cccCCCccceeeccccccCCCCCc----cccCccccccccccccccc
Q 001974 129 KLKQLAMQRNNLTGGIPP--FIGNLTSLESISLAANAFGGNIPN----SLGQLKELKSLGLGANNLS 189 (988)
Q Consensus 129 ~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~ 189 (988)
+|++|+|++|+++ .+|. .+..+++|++|++++|.+. ..|. .+..+++|+.||+++|.+.
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777775 3444 6667777777777777776 3444 3667777777777777665
No 393
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=9.8e-14 Score=156.64 Aligned_cols=335 Identities=14% Similarity=0.034 Sum_probs=251.2
Q ss_pred CcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCccc
Q 001974 44 LSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFE 123 (988)
Q Consensus 44 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~ 123 (988)
++.+-..+|.++++|+.+.|.. .++.+...+|.++.+|+.++|.++ ++.....+|.++.+|+.+.+..+ +..+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 4444556788999999999974 588777889999999999999866 66567788999999999988765 44467778
Q ss_pred ccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCcc
Q 001974 124 FFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLA 203 (988)
Q Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 203 (988)
|.+...++....... ......+|.++++|+.+.+.++... +...+|.++.+|+.+++..| ++.+...+|.++..|+
T Consensus 136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 888765554444333 2244578999999999999876543 67788999999999999877 6657788999999999
Q ss_pred EEEeccCCCCCCCCCcccccCCCCcceeccccccccccCcccccCCcccEEEeccccccCcccccccCCccccEEecccc
Q 001974 204 NFSVPRNQFHGSLPPSLGLTLPHLRLFQVHHNFFSGSIPISLSNASKLEFIEALDNSFSGKLSVNFGGMKNLSYFNVAYN 283 (988)
Q Consensus 204 ~L~L~~N~i~~~lp~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~L~~N 283 (988)
.+.+..+... +....+ ...+|+.+.+..+ ++.+....+..+..|+.+.+..+.. .+....|.....++.+....+
T Consensus 212 ~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp BCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSS
T ss_pred eeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCce
Confidence 9988776543 333333 4568888888654 3435566788999999999987754 467778999999999988776
Q ss_pred cCCCCCCCchhhhcccccCCCCcEEEeecccCCCCCCchhhhccccccEEEccCCccccCCCccccCCCcceEEEeeCcc
Q 001974 284 NLGSGESDEMSFMNSLANCSNLRTLIFAANKLRGALPHSIANLSDQLQNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQ 363 (988)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 363 (988)
.+.. .+|..+.+|+.+.+..+ ++ .+...+|..+.+|+.+++.++
T Consensus 287 ~i~~---------~~F~~~~~L~~i~l~~~-i~-------------------------~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 287 IVPE---------KTFYGCSSLTEVKLLDS-VK-------------------------FIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EECT---------TTTTTCTTCCEEEECTT-CC-------------------------EECTTTTTTCTTCCEECCCTT-
T ss_pred eecc---------ccccccccccccccccc-cc-------------------------eechhhhcCCCCCCEEEeCCc-
Confidence 5432 14567777777776543 22 233456777788888888654
Q ss_pred CCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccccccccccccccccee
Q 001974 364 FTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQLAIL 429 (988)
Q Consensus 364 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 429 (988)
++.+...+|.++.+|+.+++..| ++.....+|.++++|+.+++..+ ++ .+...|.++++|+.+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66455678899999999999876 66566778999999999999765 44 345678888888764
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.2e-16 Score=161.84 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=116.4
Q ss_pred CCcceEEEeeCccCCCccCc------ccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccccccccccccc
Q 001974 351 LVGLYRLGMGGNQFTGTIPK------EMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLK 424 (988)
Q Consensus 351 l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 424 (988)
...++.+++++|.+++..|. .+..+++|++|+|++|++++ +| .+.++++|+.|+|++|+++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 33445555555555555554 77888888888888888885 66 7788888888888888888 5677777788
Q ss_pred ccceeecCCCCCCccCchhhhhhcccccceecccccccCCCc-cccccccccceeecCCcccccccCcc----------c
Q 001974 425 QLAILHLFENGLNGTIPEEIFNLTYLSNSLNLARNHLVGSIP-TKIGNLKYLRVFNVSSNNLSGEIPSQ----------L 493 (988)
Q Consensus 425 ~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~----------~ 493 (988)
+|+.|++++|+++ .+| .+..++.+ +.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +
T Consensus 94 ~L~~L~L~~N~l~-~l~-~~~~l~~L-~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 94 TLEELWISYNQIA-SLS-GIEKLVNL-RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HCSEEEEEEEECC-CHH-HHHHHHHS-SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cCCEEECcCCcCC-cCC-ccccCCCC-CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 8888888888887 465 67788888 888888888874322 46888899999999999998776653 7
Q ss_pred ccCCCCcEEEecCccccc
Q 001974 494 GLCSYLEEIYMRGNFFHG 511 (988)
Q Consensus 494 ~~l~~L~~L~L~~N~l~~ 511 (988)
..+++|+.|| +|.++.
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 8899999886 777763
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=8.2e-15 Score=145.09 Aligned_cols=109 Identities=24% Similarity=0.302 Sum_probs=61.7
Q ss_pred ccCCCcceEEEeeCccCCCccCcccCCCC-ccCeEecccccCCCCCCCCCCCCCCCCEEEcccccccccccccccccccc
Q 001974 348 IGNLVGLYRLGMGGNQFTGTIPKEMGKLQ-NLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLGSLKQL 426 (988)
Q Consensus 348 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 426 (988)
+..+.+|+.|++++|+++ .+|. +..+. +|+.|+|++|++++. ..|..+++|+.|+|++|+|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445566666777777666 3343 33333 666666666666643 456666666666666666665444445666666
Q ss_pred ceeecCCCCCCccCch--hhhhhcccccceeccccccc
Q 001974 427 AILHLFENGLNGTIPE--EIFNLTYLSNSLNLARNHLV 462 (988)
Q Consensus 427 ~~L~l~~N~l~~~~p~--~~~~l~~l~~~L~ls~N~l~ 462 (988)
+.|++++|+++ .+|. .+..++.+ +.|++++|.++
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L-~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSL-TYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTC-CEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCC-CEEEecCCCCC
Confidence 66666666664 4444 33444444 44444444443
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=6.7e-14 Score=137.36 Aligned_cols=103 Identities=25% Similarity=0.234 Sum_probs=66.0
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCccc
Q 001974 36 VLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNK 115 (988)
Q Consensus 36 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 115 (988)
.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4566666666 3555443 667777777777776666667777777777777777775555556666666666666666
Q ss_pred ccCCCcccccCccccccccccccccc
Q 001974 116 LMGSIPFEFFSLYKLKQLAMQRNNLT 141 (988)
Q Consensus 116 i~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (988)
|++..+..|.++++|++|+|++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66555555666666666666666555
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.6e-13 Score=134.66 Aligned_cols=105 Identities=26% Similarity=0.260 Sum_probs=79.1
Q ss_pred CCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccccccccccc
Q 001974 58 LREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQR 137 (988)
Q Consensus 58 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 137 (988)
.++|++++|+|+ .+|..+ .++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 367888888888 466655 37788888888888877777788888888888888888766666777777777777777
Q ss_pred ccccCCCCCcccCCCccceeeccccccC
Q 001974 138 NNLTGGIPPFIGNLTSLESISLAANAFG 165 (988)
Q Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 165 (988)
|+|++..+..|..+++|++|+|++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777655556777777777777777766
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=1.4e-13 Score=135.46 Aligned_cols=104 Identities=25% Similarity=0.250 Sum_probs=62.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcc
Q 001974 35 TVLNLRSKGLSGSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRN 114 (988)
Q Consensus 35 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 114 (988)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45667777765 4555443 56666777776666666666666666666666666666444444556666666666666
Q ss_pred cccCCCcccccCccccccccccccccc
Q 001974 115 KLMGSIPFEFFSLYKLKQLAMQRNNLT 141 (988)
Q Consensus 115 ~i~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (988)
+|++..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 665444444555555555555555554
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=4.8e-13 Score=131.65 Aligned_cols=112 Identities=26% Similarity=0.341 Sum_probs=79.9
Q ss_pred cEEEccCCccccCCCccccCCCcceEEEeeCccCCCccCcccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEcccc
Q 001974 331 QNLIMTSNQLHGSIPSGIGNLVGLYRLGMGGNQFTGTIPKEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNN 410 (988)
Q Consensus 331 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 410 (988)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666665 4555443 67777777777777666777777888888888888887655556777888888888888
Q ss_pred ccccccccccccccccceeecCCCCCCccCchhhhh
Q 001974 411 SLSGVIPSCLGSLKQLAILHLFENGLNGTIPEEIFN 446 (988)
Q Consensus 411 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 446 (988)
+|++..+..|..+++|+.|+|++|.+. ..+..+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~~~~~ 126 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD-CECRDIMY 126 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC-TTBGGGHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc-cccccHHH
Confidence 888666666888888888888888887 44444433
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=2.4e-12 Score=142.78 Aligned_cols=108 Identities=24% Similarity=0.234 Sum_probs=85.4
Q ss_pred CceeeeeEEeCCCCcEEEEEcCCC-CCcccccccccCCCCCCEEEcCC-CcccccCCcccCCCCCCcEEECCCCCCCCcC
Q 001974 19 FCEWKGITCGLRHRRVTVLNLRSK-GLSGSLSPYIGNLSFLREINLMN-NSIQGEIPREFGRLFRLEALFLSDNDLVGEI 96 (988)
Q Consensus 19 ~c~~~~v~c~~~~~~v~~l~l~~~-~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 96 (988)
.|.|..|.|. ++ +++ .+|. |..+++|++|+|++ |+|++..+..|.+|++|++|+|++|+|++..
T Consensus 7 ~C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 4777777765 34 676 4777 88889999999986 9999877788999999999999999998888
Q ss_pred CcccccCCCCceeecCcccccCCCcccccCccccccccccccccc
Q 001974 97 PANLSYCSRLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNNLT 141 (988)
Q Consensus 97 p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (988)
|..|++|++|++|+|++|+|++..+..|..++ |++|+|.+|.+.
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 88888888888888888888866666665555 777777777665
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=7.3e-11 Score=133.05 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=59.3
Q ss_pred cCCcccccCC-CCceeecCcccccCCCcccccCccccccccccccc---ccCCCCCcccCCCccceeeccccccCCCCCc
Q 001974 95 EIPANLSYCS-RLTILFLGRNKLMGSIPFEFFSLYKLKQLAMQRNN---LTGGIPPFIGNLTSLESISLAANAFGGNIPN 170 (988)
Q Consensus 95 ~~p~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 170 (988)
+-..+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+.+|. ++..-..+|.++.+|+.+.+.++ ++.+...
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3345566553 4666666543 554556666666666666666553 33333445556666665555443 3324444
Q ss_pred cccCcccccccccccccccCccchhhccccCccEEEecc
Q 001974 171 SLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPR 209 (988)
Q Consensus 171 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 209 (988)
+|.++.+|+.+.+..+ +..+...+|..+.+|+.+.+..
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccc
Confidence 5555555555555433 2224444555555555555543
No 402
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=3.2e-12 Score=141.73 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=77.5
Q ss_pred ceecccc-cccCCCccccccccccceeecCC-cccccccCcccccCCCCcEEEecCccccccCCccccCccccCeeecCC
Q 001974 453 SLNLARN-HLVGSIPTKIGNLKYLRVFNVSS-NNLSGEIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLRAVLAIDLSR 530 (988)
Q Consensus 453 ~L~ls~N-~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~ 530 (988)
.++++++ +|+ .+|. +..+++|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|.+|++|+.|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4666 77777777777775 777766667777777777777777777777777777777777777777
Q ss_pred CcccCcCcccccCCCCcEEeCCCCcCcccCC
Q 001974 531 NNLSGLIPKFLEDLSLEYLNLSFNDLEGEVP 561 (988)
Q Consensus 531 N~l~~~~p~~~~~~~L~~l~l~~N~l~~~~p 561 (988)
|+|+++++..+....|+.|+|++|++.....
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 7777777766555557777888777776543
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=5.9e-11 Score=133.79 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCcccCCCC-CCcEEECCCCCCCCcCCcccccCCCCceeecCccc---ccCCCcccccCcccccccccccccccCCCCCc
Q 001974 72 IPREFGRLF-RLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNK---LMGSIPFEFFSLYKLKQLAMQRNNLTGGIPPF 147 (988)
Q Consensus 72 ~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~---i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (988)
-..+|.+.. .|+.+.+..+ ++.+-..+|.++.+|+.+.++.|. ++.+...+|.++.+|+.+.+.++ ++.....+
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 334454442 3555555433 343444555555555555555442 33344455555555555555433 23233445
Q ss_pred ccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCccEEEeccCCCCCCCCCcccccCCCC
Q 001974 148 IGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLLANFSVPRNQFHGSLPPSLGLTLPHL 227 (988)
Q Consensus 148 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~lp~~~~~~l~~L 227 (988)
|.++.+|+.+.+..+. ..+...+|..+.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-. .+....|..+.++
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCTTC
T ss_pred hhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhhcccc
Confidence 5555555555554332 2244445555555555555543 33244444433 3455555544322 2333344444444
Q ss_pred cceeccc
Q 001974 228 RLFQVHH 234 (988)
Q Consensus 228 ~~L~L~~ 234 (988)
.......
T Consensus 208 ~~~~~~~ 214 (394)
T 4gt6_A 208 STITSDS 214 (394)
T ss_dssp CEEEECC
T ss_pred ceecccc
Confidence 4444333
No 404
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=6e-14 Score=155.93 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=44.9
Q ss_pred ccccccceeecCCcccccc----cCcccccCCCCcEEEecCcccccc----CCccccCccccCeeecCCCcccCcCccc-
Q 001974 470 GNLKYLRVFNVSSNNLSGE----IPSQLGLCSYLEEIYMRGNFFHGS----IPSSLSSLRAVLAIDLSRNNLSGLIPKF- 540 (988)
Q Consensus 470 ~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~- 540 (988)
..+++|++|||++|.|++. ++..+..+++|+.|+|++|.|+.. ++..+...++|+.|||++|.|+......
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 4445566666666666532 234455556666666666666542 2333444566777777777766443322
Q ss_pred ccC---CC--CcEEe--CCCCcCc
Q 001974 541 LED---LS--LEYLN--LSFNDLE 557 (988)
Q Consensus 541 ~~~---~~--L~~l~--l~~N~l~ 557 (988)
... .. |+.+. +..|.++
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHCC------CEEECCCC----CH
T ss_pred HHHhcCCCccchhhHhhhcCCccC
Confidence 111 11 66666 6666654
No 405
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1e-12 Score=145.90 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=90.5
Q ss_pred cccceeecCCCCCCccCchhhh-hhcccccceecccccccCCCcccc-----ccccccceeecCCccccc----ccCccc
Q 001974 424 KQLAILHLFENGLNGTIPEEIF-NLTYLSNSLNLARNHLVGSIPTKI-----GNLKYLRVFNVSSNNLSG----EIPSQL 493 (988)
Q Consensus 424 ~~L~~L~l~~N~l~~~~p~~~~-~l~~l~~~L~ls~N~l~~~~p~~~-----~~l~~L~~L~ls~N~l~~----~~p~~~ 493 (988)
++|+.|+|++|.++......+. .+..+ +.|+|++|.++......+ ...++|+.|+|++|.|+. .++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L-~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRA-RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTE-EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhc-cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 4555555555555422222222 23344 556666665543322222 234679999999999975 345556
Q ss_pred ccCCCCcEEEecCcccccc----CCccccCccccCeeecCCCcccCcCcc-----cccCCCCcEEeCCCCcCccc
Q 001974 494 GLCSYLEEIYMRGNFFHGS----IPSSLSSLRAVLAIDLSRNNLSGLIPK-----FLEDLSLEYLNLSFNDLEGE 559 (988)
Q Consensus 494 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~-----~~~~~~L~~l~l~~N~l~~~ 559 (988)
..+++|++|+|++|.|+.. ++..+...++|+.|||++|+|+..... ....++|++|||++|.++..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 7899999999999999853 356677788999999999999864322 23557899999999998653
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.20 E-value=3.3e-11 Score=127.69 Aligned_cols=147 Identities=14% Similarity=0.073 Sum_probs=112.5
Q ss_pred HHhhCCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCCceEEEeecccccccCC
Q 001974 659 FKATDGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRNLVKVITSCSSIDFQGN 737 (988)
Q Consensus 659 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~ 737 (988)
.....+|++....+.|+.+.||++.. .++.+++|+...........+.+|+++++.+ .+..+.++++++. ..
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~-----~~ 82 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----HD 82 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----ET
T ss_pred HHHhccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEe-----cC
Confidence 34456788888899999999999976 4688999998643223345688999999998 4677888888754 34
Q ss_pred CceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC---------------------
Q 001974 738 DFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC--------------------- 796 (988)
Q Consensus 738 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~--------------------- 796 (988)
+..++||||++|.++.+.+... .+...++.+++++++.||+..
T Consensus 83 ~~~~lv~e~i~G~~l~~~~~~~----------------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~ 146 (263)
T 3tm0_A 83 GWSNLLMSEADGVLCSEEYEDE----------------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLL 146 (263)
T ss_dssp TEEEEEEECCSSEEHHHHCCTT----------------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHH
T ss_pred CceEEEEEecCCeehhhccCCc----------------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHH
Confidence 6789999999999998764211 123468889999999999821
Q ss_pred -----------------------------------CCCeEeccCCCCCeeeCCCCcEEEeeeccccc
Q 001974 797 -----------------------------------QEPVLHCDLKPGNVLLDNDMIAHVGDFGLARV 828 (988)
Q Consensus 797 -----------------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 828 (988)
...++|||++|.||+++++..+.|+||+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 147 NNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp HTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred hccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 13589999999999998765667999998753
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.01 E-value=6e-10 Score=117.88 Aligned_cols=138 Identities=17% Similarity=0.084 Sum_probs=97.5
Q ss_pred CCCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCC--ceEEEeecccccccCCCce
Q 001974 663 DGFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRN--LVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 663 ~~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~~~~~~~~~ 740 (988)
.+|.+....+.|..+.||++.. .+|+.+++|+.... ....+..|+++++.+.+.+ +.+++++.. .++..
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~-----~~~~~ 90 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVT-----EAGRD 90 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEE-----CSSCE
T ss_pred CCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEecc-----CCCCC
Confidence 4455433334566699999976 36778999997543 2356789999999985444 556777643 33668
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC------------------------
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC------------------------ 796 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------ 796 (988)
++||||++|.++. ... .+ ...++.++++.++.||+..
T Consensus 91 ~~v~e~i~G~~l~--~~~--------------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (264)
T 1nd4_A 91 WLLLGEVPGQDLL--SSH--------------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAG 151 (264)
T ss_dssp EEEEECCSSEETT--TSC--------------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTT
T ss_pred EEEEEecCCcccC--cCc--------------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcC
Confidence 9999999998884 211 11 1256777888888888742
Q ss_pred -------------------------------CCCeEeccCCCCCeeeCCCCcEEEeeeccccc
Q 001974 797 -------------------------------QEPVLHCDLKPGNVLLDNDMIAHVGDFGLARV 828 (988)
Q Consensus 797 -------------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 828 (988)
...++|||++|.||++++++.+.|+|||.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 152 LVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp CCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred CccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11299999999999998776677999998753
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=8.4e-09 Score=115.52 Aligned_cols=128 Identities=9% Similarity=0.054 Sum_probs=67.4
Q ss_pred ccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCcccccCCCcccccCccc
Q 001974 50 PYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLMGSIPFEFFSLYK 129 (988)
Q Consensus 50 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 129 (988)
+++....+|+.+.+. ..++.+-..+|.++.+|+.+.|..+ ++..-..+|.++ +|+.+.+..+ ++.+...+|.. .+
T Consensus 40 ~~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 345555667777775 3466566667777777887777654 554555666665 5666665533 44344445544 35
Q ss_pred ccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCccccccccccc
Q 001974 130 LKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGA 185 (988)
Q Consensus 130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 185 (988)
|+.+.+.++... .....|.+. +|+.+.+..+ ++.....+|....+++.+.+..
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred cccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 666666544222 233334332 3444444332 2223344444445554444443
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=3.1e-08 Score=110.92 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=38.5
Q ss_pred cccCcccccccccccccccCCCCCcccCCCccceeeccccccCCCCCccccCcccccccccccccccCccchhhccccCc
Q 001974 123 EFFSLYKLKQLAMQRNNLTGGIPPFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLGANNLSGIIPPSIYNLSLL 202 (988)
Q Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 202 (988)
++....+|+.+.+.. .++.+...+|.++.+|+.+.|..+ ++.+...+|.+. +|+.+.+..+ ++.+...+|... +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 344455566665543 234344455666666666666433 443444555554 3444444322 332333344332 45
Q ss_pred cEEEecc
Q 001974 203 ANFSVPR 209 (988)
Q Consensus 203 ~~L~L~~ 209 (988)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 5554443
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.87 E-value=5.5e-09 Score=116.02 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=107.6
Q ss_pred CCCceeccccceeEEEEEECCCCeEEEEEEee--cccc-chhHHHHHHHHHHHhcC--CCCceEEEeecccccccCCCce
Q 001974 666 SSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFN--LQRH-GASKSFLAECKALKNIR--HRNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 666 ~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~--~~~~-~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~~~~~ 740 (988)
..++.++.|.++.||++... +..+++|+.. .... .....+.+|+++++.+. +..+.++++++... ...+..
T Consensus 41 ~~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~--~~~g~~ 116 (359)
T 3dxp_A 41 LSVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDE--SVIGRA 116 (359)
T ss_dssp CEEEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCT--TTTSSC
T ss_pred ceEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCC--CccCCe
Confidence 34678999999999998873 4678888875 3221 22356888999999996 45678888886542 112457
Q ss_pred EEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC------------------------
Q 001974 741 ALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC------------------------ 796 (988)
Q Consensus 741 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------ 796 (988)
++||||++|..+.+... ..++..++..++.+++++|+.||+..
T Consensus 117 ~~vme~v~G~~l~~~~~-------------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (359)
T 3dxp_A 117 FYIMEFVSGRVLWDQSL-------------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWT 183 (359)
T ss_dssp EEEEECCCCBCCCCTTC-------------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHH
T ss_pred EEEEEecCCeecCCCcc-------------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHH
Confidence 89999999887754211 24677888899999999999999731
Q ss_pred -------------------------------CCCeEeccCCCCCeeeCCCCc--EEEeeeccccccc
Q 001974 797 -------------------------------QEPVLHCDLKPGNVLLDNDMI--AHVGDFGLARVRQ 830 (988)
Q Consensus 797 -------------------------------~~~ivH~Dlkp~NIll~~~~~--~kL~DfG~a~~~~ 830 (988)
...++|||++|.||+++.++. +.|+||+.+....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g~ 250 (359)
T 3dxp_A 184 KQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGH 250 (359)
T ss_dssp HHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEEC
T ss_pred HHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccCC
Confidence 247999999999999997753 6899999987543
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=7.5e-10 Score=121.66 Aligned_cols=164 Identities=12% Similarity=0.113 Sum_probs=83.9
Q ss_pred cccCCCCccCeEecccccCCCCCCCCCCCCCCCCEEEccccccccccccccc--cccccceeecCC--CCCCccCchhhh
Q 001974 370 KEMGKLQNLEGMGLYDNQLSGEIPSSLGNLSILSELLLNNNSLSGVIPSCLG--SLKQLAILHLFE--NGLNGTIPEEIF 445 (988)
Q Consensus 370 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~l~~--N~l~~~~p~~~~ 445 (988)
..+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.+.......++ .+++|+.|+|+. |...|.. .+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH
Confidence 33455567777777666311 1222 32 66777777776666543333333 566777776642 1111110 000
Q ss_pred hhcccccceecccccccCCCccccccccccceeecCCcccccccCcccc---cCCCCcEEEecCcccccc----CCcccc
Q 001974 446 NLTYLSNSLNLARNHLVGSIPTKIGNLKYLRVFNVSSNNLSGEIPSQLG---LCSYLEEIYMRGNFFHGS----IPSSLS 518 (988)
Q Consensus 446 ~l~~l~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~----~p~~~~ 518 (988)
.+..+ +. ...+++|++|+|++|.+.+..+..+. .+++|+.|+|+.|.|+.. ++..+.
T Consensus 241 ~l~~~----------l~------~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 241 VFRPL----------FS------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp GTGGG----------SC------TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred HHHHH----------Hh------cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 00000 00 02356677777777776644433332 356777777777777653 333344
Q ss_pred CccccCeeecCCCcccCcCccc-ccCCCCcEEeCCCCc
Q 001974 519 SLRAVLAIDLSRNNLSGLIPKF-LEDLSLEYLNLSFND 555 (988)
Q Consensus 519 ~l~~L~~L~ls~N~l~~~~p~~-~~~~~L~~l~l~~N~ 555 (988)
.+++|+.|+|++|.|+...-.. .... ...++++.|.
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 5677777777777766432211 1100 2456777776
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=7e-10 Score=121.93 Aligned_cols=187 Identities=13% Similarity=0.150 Sum_probs=99.3
Q ss_pred CCcEEEEEcCCCCCcc-c-------ccccccCCCCCCEEEcCCCccc---------ccCCcccCCCCCCcEEECCCCC-C
Q 001974 31 HRRVTVLNLRSKGLSG-S-------LSPYIGNLSFLREINLMNNSIQ---------GEIPREFGRLFRLEALFLSDND-L 92 (988)
Q Consensus 31 ~~~v~~l~l~~~~~~~-~-------~~~~l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~Ls~n~-l 92 (988)
..+|+.|.+...+..+ . +..++..+++|+.|.+.++... +.+...+..+++|++|+|++|. +
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467788887766552 2 2344566789999988765432 1233445667788888887773 2
Q ss_pred CCcCCcccccCCCCceeecCcccccCCCccccc--Cccccccccccc--ccccCCCCCcccCCCccceeeccccccCCCC
Q 001974 93 VGEIPANLSYCSRLTILFLGRNKLMGSIPFEFF--SLYKLKQLAMQR--NNLTGGIPPFIGNLTSLESISLAANAFGGNI 168 (988)
Q Consensus 93 ~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 168 (988)
. ++. +. +++|++|+|..|.+.......+. .+++|++|+|+. |...+.. .+.. |
T Consensus 186 ~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~---l-------------- 242 (362)
T 2ra8_A 186 S--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNV---F-------------- 242 (362)
T ss_dssp B--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGG---T--------------
T ss_pred e--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHH---H--------------
Confidence 2 232 33 67777777777766533333333 566777776642 2211100 0000 0
Q ss_pred Cccc--cCcccccccccccccccCccchhhc---cccCccEEEeccCCCCCCCCCccc---ccCCCCcceeccccccccc
Q 001974 169 PNSL--GQLKELKSLGLGANNLSGIIPPSIY---NLSLLANFSVPRNQFHGSLPPSLG---LTLPHLRLFQVHHNFFSGS 240 (988)
Q Consensus 169 ~~~~--~~l~~L~~L~L~~N~l~~~~~~~l~---~l~~L~~L~L~~N~i~~~lp~~~~---~~l~~L~~L~L~~N~l~~~ 240 (988)
...+ ..+++|++|+|++|.+....+..+. .+++|++|+|+.|.+.+..+..+. ..+++|+.|+|++|.|+..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 0011 1345566666666665533333332 355666666666666532211121 2456677777777766643
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.79 E-value=1.8e-09 Score=116.80 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=123.0
Q ss_pred CCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhc-CCCC--ceEEEeecccccccCCCceEEE
Q 001974 667 STHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNI-RHRN--LVKVITSCSSIDFQGNDFKALV 743 (988)
Q Consensus 667 ~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~n--iv~~~~~~~~~~~~~~~~~~lv 743 (988)
.++.++.|....||++. ..+++|+.... .....+.+|+++++.+ .+.. +.+++...... ......++|
T Consensus 24 ~i~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~--~~~~~~~~v 94 (304)
T 3sg8_A 24 TIEISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS--ETYQMSFAG 94 (304)
T ss_dssp CCCEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCC--SSCSCSCEE
T ss_pred eeEecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCC--CCCCcceEE
Confidence 35678999999999863 45888986422 3456788999999888 3332 44555543211 111245789
Q ss_pred EeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC---------------------------
Q 001974 744 YEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC--------------------------- 796 (988)
Q Consensus 744 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~--------------------------- 796 (988)
||+++|.++.+... ..++..++..++.+++..++.||+..
T Consensus 95 m~~i~G~~l~~~~~-------------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (304)
T 3sg8_A 95 FTKIKGVPLTPLLL-------------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLL 161 (304)
T ss_dssp EECCCCEECCHHHH-------------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHH
T ss_pred EcccCCeECCcccc-------------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHh
Confidence 99999988864321 25677788888888998888888621
Q ss_pred ----------------------------CCCeEeccCCCCCeeeCC--CCcEEEeeecccccccccccccceecc-----
Q 001974 797 ----------------------------QEPVLHCDLKPGNVLLDN--DMIAHVGDFGLARVRQEVSNLTQSCSV----- 841 (988)
Q Consensus 797 ----------------------------~~~ivH~Dlkp~NIll~~--~~~~kL~DfG~a~~~~~~~~~~~~~~~----- 841 (988)
.+.++|+|++|.||++++ ...+.++||+.+...+...+.......
T Consensus 162 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~ 241 (304)
T 3sg8_A 162 SRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYG 241 (304)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCC
T ss_pred cccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccC
Confidence 135899999999999998 456789999998754332111100000
Q ss_pred -----cccccccccc-CcccCCCCCCCccchHHHHHHHHHHHhCCCCC
Q 001974 842 -----GVRGTIGYAA-PEYGLGSEVSTNGDIYSYGILLLEMVTGKKPT 883 (988)
Q Consensus 842 -----~~~gt~~y~a-PE~~~~~~~~~~sDvwslG~vl~elltg~~p~ 883 (988)
......+... |+.... .....+.|++|.++|.+.+|..+|
T Consensus 242 ~~~~~~~l~~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 242 MEFVSKILNHYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0000001111 111110 112268999999999999998874
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=7.2e-10 Score=115.18 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=79.9
Q ss_pred CceeeeeEEeCCCCcEEEEEcCCC---CCccccc-ccccCCC---------CCCEEEcCCCcccccCCcccCCCCCCcE-
Q 001974 19 FCEWKGITCGLRHRRVTVLNLRSK---GLSGSLS-PYIGNLS---------FLREINLMNNSIQGEIPREFGRLFRLEA- 84 (988)
Q Consensus 19 ~c~~~~v~c~~~~~~v~~l~l~~~---~~~~~~~-~~l~~l~---------~L~~L~L~~n~l~~~~p~~~~~l~~L~~- 84 (988)
.|.|.|+.|.....+|+.+...+. .+.+.++ ..+..++ .-+.|||+. |...+.|..
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~----------l~~dp~L~~~ 146 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG----------LRSDPDLVAQ 146 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTT----------GGGCHHHHHT
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHH----------cCCCcchhhc
Confidence 589999999977777777666441 1222222 1222221 223344432 333333443
Q ss_pred -EECCCCCCCCcCCcc----cccCCCCceeecCcccccC--CCcccccCcccccccccccccccCCCCCcccCCC--ccc
Q 001974 85 -LFLSDNDLVGEIPAN----LSYCSRLTILFLGRNKLMG--SIPFEFFSLYKLKQLAMQRNNLTGGIPPFIGNLT--SLE 155 (988)
Q Consensus 85 -L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~ 155 (988)
++++.|+.. .++.. ..++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+
T Consensus 147 ~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~ 223 (267)
T 3rw6_A 147 NIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLE 223 (267)
T ss_dssp TCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCS
T ss_pred CccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcc
Confidence 455555433 22221 1345566666666666664 2234555666666666666666643 2233333 677
Q ss_pred eeeccccccCCCCCc-------cccCcccccccc
Q 001974 156 SISLAANAFGGNIPN-------SLGQLKELKSLG 182 (988)
Q Consensus 156 ~L~L~~N~l~~~~~~-------~~~~l~~L~~L~ 182 (988)
+|+|++|.+.+..|+ .+..+++|+.||
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 777777777654442 355677777766
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.48 E-value=3.9e-07 Score=99.06 Aligned_cols=138 Identities=16% Similarity=0.170 Sum_probs=101.3
Q ss_pred CCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCC----CCceEEEeecccccccCCCc
Q 001974 664 GFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRH----RNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 664 ~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~~~~~~~~~~~~~~~~ 739 (988)
.+..++.++.|..+.||++ |+.+++|+.... .....+.+|.++++.+.+ ..+.+++++ +.
T Consensus 38 ~i~~v~~l~~G~~n~vy~v-----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---------~~ 101 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC-----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ---------SD 101 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE-----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---------CS
T ss_pred ceEEEEeCCCCCCceEEEE-----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec---------CC
Confidence 4566788999999999997 556888976422 223568899999988865 234555554 34
Q ss_pred eEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCC----------------------
Q 001974 740 KALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQ---------------------- 797 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~---------------------- 797 (988)
.++||||++|.++..... ..++..+...++.++++.++.||+...
T Consensus 102 ~~lvme~i~G~~l~~~~~-------------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (320)
T 3r70_A 102 RFNIMKYIKGERITYEQY-------------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDK 168 (320)
T ss_dssp SCEEEECCCCBCCCHHHH-------------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHH
T ss_pred cEEEEeecCCcccccccc-------------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHH
Confidence 579999999988863321 245666777788888888888885421
Q ss_pred --------------------------------------CCeEeccCCCCCeeeCCCCcEEEeeeccccccc
Q 001974 798 --------------------------------------EPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQ 830 (988)
Q Consensus 798 --------------------------------------~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~ 830 (988)
+.++|+|++|.||+++++..+.|+||+.+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~~ 239 (320)
T 3r70_A 169 KLLISILEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD 239 (320)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEEC
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccCC
Confidence 235999999999999987667999999987543
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=6.1e-09 Score=103.20 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=47.4
Q ss_pred ccccccccCCCCCCEEEcCCC-cccc----cCCcccCCCCCCcEEECCCCCCCCc----CCcccccCCCCceeecCcccc
Q 001974 46 GSLSPYIGNLSFLREINLMNN-SIQG----EIPREFGRLFRLEALFLSDNDLVGE----IPANLSYCSRLTILFLGRNKL 116 (988)
Q Consensus 46 ~~~~~~l~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~i 116 (988)
..+...+...+.|++|+|++| .|.. .+...+...++|++|+|++|+|... +...+...++|++|+|++|.|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 344556667788888888888 7763 2344566677788888888877642 233344456677777777766
Q ss_pred c
Q 001974 117 M 117 (988)
Q Consensus 117 ~ 117 (988)
.
T Consensus 106 ~ 106 (185)
T 1io0_A 106 S 106 (185)
T ss_dssp C
T ss_pred C
Confidence 5
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=5.6e-08 Score=100.95 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=30.3
Q ss_pred ccccceeecCCccccc--ccCcccccCCCCcEEEecCccccccCCccccCcc--ccCeeecCCCcccCcCc
Q 001974 472 LKYLRVFNVSSNNLSG--EIPSQLGLCSYLEEIYMRGNFFHGSIPSSLSSLR--AVLAIDLSRNNLSGLIP 538 (988)
Q Consensus 472 l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~ls~N~l~~~~p 538 (988)
+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4445555555555544 2334444455555555555555532 2222222 45555555555554433
No 418
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.39 E-value=1.1e-06 Score=93.21 Aligned_cols=137 Identities=16% Similarity=0.087 Sum_probs=97.9
Q ss_pred ceeccccce-eEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCCCceEEEEee
Q 001974 669 HLIGMGSFG-SVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGNDFKALVYEF 746 (988)
Q Consensus 669 ~~lg~G~~g-~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~~lv~e~ 746 (988)
+.+..|..| .||+......+..+++|+-.. ....++.+|...++.+. +--+.++++++.. ++..++|||+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-----~~~~~lvme~ 101 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRT-----PDDAWLLTTA 101 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-----TTEEEEEEEC
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEE-----CCeEEEEEEe
Confidence 345556665 699988876778899998653 23467888999998883 3346677777543 3678999999
Q ss_pred ccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCC------------------------------
Q 001974 747 MTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHC------------------------------ 796 (988)
Q Consensus 747 ~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------ 796 (988)
++|.++.+.... .......++.+++..|+.||+..
T Consensus 102 l~G~~~~~~~~~---------------~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (272)
T 4gkh_A 102 IPGKTAFQVLEE---------------YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD 166 (272)
T ss_dssp CCSEEHHHHHHH---------------CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGG
T ss_pred eCCccccccccC---------------CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhh
Confidence 999888765421 11223456667777777777531
Q ss_pred -------------------------CCCeEeccCCCCCeeeCCCCcEEEeeeccccc
Q 001974 797 -------------------------QEPVLHCDLKPGNVLLDNDMIAHVGDFGLARV 828 (988)
Q Consensus 797 -------------------------~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 828 (988)
...++|+|+.+.||++++++.+-|+||+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 167 FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp CCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred ccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 12379999999999999877777999998853
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.38 E-value=1.1e-06 Score=93.36 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=60.4
Q ss_pred CCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCC---CceEEEeecccccccCCCceEEE
Q 001974 667 STHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHR---NLVKVITSCSSIDFQGNDFKALV 743 (988)
Q Consensus 667 ~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~lv 743 (988)
..+.++.|.++.||+++.. +|+.++||+...........+..|++.++.+.+. .+.+++++ +..++|
T Consensus 19 ~~~~l~gG~~n~vy~v~~~-dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~---------~~~~lv 88 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW---------DDRTLA 88 (288)
T ss_dssp EEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE---------ETTEEE
T ss_pred ceeeeCCcchhheEEEEeC-CCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEe---------cCcEEE
Confidence 4578999999999999874 7889999997543333446789999999999764 57888876 235899
Q ss_pred Eeeccccch
Q 001974 744 YEFMTNGSL 752 (988)
Q Consensus 744 ~e~~~~gsL 752 (988)
|||++++++
T Consensus 89 me~l~g~~~ 97 (288)
T 3d1u_A 89 MEWVDERPP 97 (288)
T ss_dssp EECCCCCCC
T ss_pred EEecccCCC
Confidence 999998764
No 420
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=2e-07 Score=92.27 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=8.8
Q ss_pred cCCCCccCeEecccc-cCC
Q 001974 372 MGKLQNLEGMGLYDN-QLS 389 (988)
Q Consensus 372 ~~~l~~L~~L~L~~N-~l~ 389 (988)
+...++|++|+|++| .|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 344445555555555 443
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.25 E-value=4.1e-06 Score=90.22 Aligned_cols=138 Identities=15% Similarity=0.106 Sum_probs=93.2
Q ss_pred CCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCC---CceEEEeecccccccCCCceEEE
Q 001974 667 STHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHR---NLVKVITSCSSIDFQGNDFKALV 743 (988)
Q Consensus 667 ~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~~~~~~lv 743 (988)
.++.++.|....||+. |+.+++|+.. .......+.+|+++++.+.+. .+.+++.++. ...+..++|
T Consensus 23 ~v~~l~~G~~n~v~~v-----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~----~~~g~~~~v 91 (306)
T 3tdw_A 23 SVESLGEGFRNYAILV-----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK----RSDGNPFVG 91 (306)
T ss_dssp CEEEEEECSSEEEEEE-----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE----CTTSCEEEE
T ss_pred eeeecCCCcceeEEEE-----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc----cCCCceEEE
Confidence 3467888998999987 4568888853 223456789999999999642 3556666543 123567899
Q ss_pred EeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcC----------------------------
Q 001974 744 YEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHH---------------------------- 795 (988)
Q Consensus 744 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~---------------------------- 795 (988)
|||++|.++.+... ..++..+...++.++++.|+.||+.
T Consensus 92 ~e~i~G~~l~~~~~-------------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~ 158 (306)
T 3tdw_A 92 YRKVQGQILGEDGM-------------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVED 158 (306)
T ss_dssp EECCCSEECHHHHH-------------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHH
T ss_pred EeccCCeECchhhh-------------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 99999988875321 1233444444555555555555532
Q ss_pred -----------------------------CCCCeEeccCCCCCeeeCC---CCc-EEEeeeccccc
Q 001974 796 -----------------------------CQEPVLHCDLKPGNVLLDN---DMI-AHVGDFGLARV 828 (988)
Q Consensus 796 -----------------------------~~~~ivH~Dlkp~NIll~~---~~~-~kL~DfG~a~~ 828 (988)
..+.++|+|++|.||+++. ++. +.|+||+.+..
T Consensus 159 ~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 159 QVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred hcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1235799999999999997 455 48999998864
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.16 E-value=8e-06 Score=90.00 Aligned_cols=78 Identities=9% Similarity=0.097 Sum_probs=56.9
Q ss_pred CCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCC--ceEEEeecccccccCCCceEE
Q 001974 665 FSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRN--LVKVITSCSSIDFQGNDFKAL 742 (988)
Q Consensus 665 y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~~~~~~~~~~l 742 (988)
....+.++.|....+|+... +++.+++|+.... ..+..|+.+++.+.... +.++++++.. ..+..++
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~--~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~----~~g~~~l 111 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV--GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEF----SESLTYC 111 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE--TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEES----SSSCEEE
T ss_pred CceEEECCCCCcceEEEEEE--CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccC----CCCCeEE
Confidence 34467789999999999886 6888999987422 36888999999885433 4566665432 1256799
Q ss_pred EEeeccccchh
Q 001974 743 VYEFMTNGSLE 753 (988)
Q Consensus 743 v~e~~~~gsL~ 753 (988)
||||++|.++.
T Consensus 112 v~e~l~G~~l~ 122 (362)
T 3ovc_A 112 ISRRAQGVTLQ 122 (362)
T ss_dssp EEECCCSEETT
T ss_pred EEEecCCCCcc
Confidence 99999987765
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.97 E-value=1.5e-05 Score=88.05 Aligned_cols=85 Identities=6% Similarity=-0.083 Sum_probs=56.5
Q ss_pred Ccee-ccccceeEEEEEEC--C----CCeEEEEEEeeccc---cchhHHHHHHHHHHHhcC-C--CCceEEEeecccccc
Q 001974 668 THLI-GMGSFGSVYKGAFD--Q----DGTIVAIKVFNLQR---HGASKSFLAECKALKNIR-H--RNLVKVITSCSSIDF 734 (988)
Q Consensus 668 ~~~l-g~G~~g~Vy~a~~~--~----~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~~~~~~~~~~~ 734 (988)
.+.| +.|....+|+.... . +++.+++|+..... ......+..|+.+++.+. + -.+.++++++....
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~- 103 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGD- 103 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSST-
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCC-
Confidence 3567 88889999998763 1 16788999865332 111256788999888883 2 35777887754321
Q ss_pred cCCCceEEEEeeccccchhh
Q 001974 735 QGNDFKALVYEFMTNGSLEN 754 (988)
Q Consensus 735 ~~~~~~~lv~e~~~~gsL~~ 754 (988)
..+..++||||++|..+.+
T Consensus 104 -~~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 104 -VLGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp -TTSSCEEEEECCCCBCCCB
T ss_pred -ccCCceEEEEecCCCChhh
Confidence 1135689999999877764
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.94 E-value=2.3e-05 Score=87.96 Aligned_cols=76 Identities=17% Similarity=0.063 Sum_probs=50.0
Q ss_pred CceeccccceeEEEEEECCCCeEEEEEEeecccc-------chhHHHHHHHHHHHhcCC--C-CceEEEeecccccccCC
Q 001974 668 THLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRH-------GASKSFLAECKALKNIRH--R-NLVKVITSCSSIDFQGN 737 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~-niv~~~~~~~~~~~~~~ 737 (988)
.+.+|.|..+.||++....+++.|+||....... .....+..|.++++.+.. + .+.+++.+. .
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d-------~ 107 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD-------T 107 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE-------T
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc-------C
Confidence 5689999999999997655678899998653211 123466789999888732 3 344566542 2
Q ss_pred CceEEEEeecccc
Q 001974 738 DFKALVYEFMTNG 750 (988)
Q Consensus 738 ~~~~lv~e~~~~g 750 (988)
+..++||||+++.
T Consensus 108 ~~~~lvmE~l~g~ 120 (397)
T 2olc_A 108 EMAVTVMEDLSHL 120 (397)
T ss_dssp TTTEEEECCCTTS
T ss_pred CccEEEEEeCCCc
Confidence 3458999999764
No 425
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.82 E-value=5.9e-05 Score=80.36 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCCCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCC---CCceEEEeecccccccCCCce
Q 001974 664 GFSSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRH---RNLVKVITSCSSIDFQGNDFK 740 (988)
Q Consensus 664 ~y~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~~~~~~~~~~~~~~~~~ 740 (988)
....++.+|.|..+.||+.+.. +|+.|++|+...........+..|++.|+.+.. --+.+++++ +..
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~-DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~---------~~~ 85 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW---------DDR 85 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE---------ETT
T ss_pred CeEEEEecCCCCCeEEEEEEEC-CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec---------cCc
Confidence 3445678999999999999985 889999998765444444678899999998832 245666665 234
Q ss_pred EEEEeeccccc
Q 001974 741 ALVYEFMTNGS 751 (988)
Q Consensus 741 ~lv~e~~~~gs 751 (988)
++||||++++.
T Consensus 86 ~lv~e~l~~~~ 96 (288)
T 3f7w_A 86 TLAMEWVDERP 96 (288)
T ss_dssp EEEEECCCCCC
T ss_pred eEEEEeecccC
Confidence 78999997654
No 426
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=7.7e-06 Score=78.46 Aligned_cols=83 Identities=8% Similarity=0.045 Sum_probs=39.6
Q ss_pred CCCcEEECCCCCCCCcCCcccccCCCCceeecCccc-ccCCCcccccCc----cccccccccccc-ccCCCCCcccCCCc
Q 001974 80 FRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNK-LMGSIPFEFFSL----YKLKQLAMQRNN-LTGGIPPFIGNLTS 153 (988)
Q Consensus 80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~~ 153 (988)
.+|++|||+++.|+..--..+..+++|++|+|++|. |+...-..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666554444445556666666666653 442222233332 245555555542 44222223334444
Q ss_pred cceeecccc
Q 001974 154 LESISLAAN 162 (988)
Q Consensus 154 L~~L~L~~N 162 (988)
|++|+|+++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 444444444
No 427
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.58 E-value=0.00029 Score=77.09 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=80.5
Q ss_pred ceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC--CCCceEEEeeccccc-ccCCCceEEEEe
Q 001974 669 HLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR--HRNLVKVITSCSSID-FQGNDFKALVYE 745 (988)
Q Consensus 669 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~-~~~~~~~~lv~e 745 (988)
+.++.|..+.||++... +..+++|+.... ...+..|+.+++.+. .-.+.+++....... ...++..++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~--~~~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~ 111 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTD--SGAVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD 111 (346)
T ss_dssp EECC----CEEEEEEET--TEEEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred eeccccccCcEEEEEeC--CCCEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence 45666778999999873 345899998642 234445666666553 123444443211100 012456789999
Q ss_pred eccccchhh--------------hcC----CCCCCCchhhhHhhcCCHHH------------------------------
Q 001974 746 FMTNGSLEN--------------WLH----PDAVPQKDVEIEIQKLTLLQ------------------------------ 777 (988)
Q Consensus 746 ~~~~gsL~~--------------~l~----~~~~~~~~~~~~~~~l~~~~------------------------------ 777 (988)
|++|.++.. .++ ....+... ......-.|..
T Consensus 112 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (346)
T 2q83_A 112 WIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGV-PIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQ 190 (346)
T ss_dssp CCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTC-CCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred eecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccc-hhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 998865420 011 00000000 00000000100
Q ss_pred -HHHHHHHHHHHHHHHHc----------CCCCCeEeccCCCCCeeeCCCCcEEEeeecccc
Q 001974 778 -RINIAIDVASAIDYLHH----------HCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLAR 827 (988)
Q Consensus 778 -~~~i~~~i~~~L~~LH~----------~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 827 (988)
...+..++..++++|++ .....++|||+++.||+++.++.+.|+||+.+.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 191 EIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 11122334456677763 013589999999999999888899999999775
No 428
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.48 E-value=2.2e-05 Score=75.29 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=38.3
Q ss_pred ccccccccccccCCCCCcccCCCccceeeccccc-cCCCCCccccCc----cccccccccccc-ccCccchhhccccCcc
Q 001974 130 LKQLAMQRNNLTGGIPPFIGNLTSLESISLAANA-FGGNIPNSLGQL----KELKSLGLGANN-LSGIIPPSIYNLSLLA 203 (988)
Q Consensus 130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~~L~ 203 (988)
|++|+++++.++..--..+.++++|++|+|++|. |+..--..++.+ ++|++|+|++|. |+..--..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 4444444444433222334444555555555543 332222223332 246666666653 5543334455566666
Q ss_pred EEEeccCC
Q 001974 204 NFSVPRNQ 211 (988)
Q Consensus 204 ~L~L~~N~ 211 (988)
+|+|+++.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 66666553
No 429
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.47 E-value=0.00044 Score=73.91 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=58.0
Q ss_pred CCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC---CCCceEEEeecccccccCCCceEEE
Q 001974 667 STHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR---HRNLVKVITSCSSIDFQGNDFKALV 743 (988)
Q Consensus 667 ~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~~~~~~~~~~lv 743 (988)
..+.++.|....+|+... +++.+++|+.... ....+..|++.|+.+. ...+.++++++.. ++..++|
T Consensus 40 ~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~lv 109 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFLL 109 (312)
T ss_dssp EEEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEEE
T ss_pred eeEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEEE
Confidence 356789999999999876 5678889987532 3467889999998883 3567888877432 3678999
Q ss_pred Eeeccccch
Q 001974 744 YEFMTNGSL 752 (988)
Q Consensus 744 ~e~~~~gsL 752 (988)
|||+++..+
T Consensus 110 me~l~G~~~ 118 (312)
T 3jr1_A 110 LEALNKSKN 118 (312)
T ss_dssp EECCCCCCC
T ss_pred EEeccCCCC
Confidence 999988764
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.35 E-value=0.00043 Score=78.02 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=49.8
Q ss_pred CCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccccCcccCCC---CCCCccchHHHHHHHH
Q 001974 798 EPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYAAPEYGLGS---EVSTNGDIYSYGILLL 874 (988)
Q Consensus 798 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~sDvwslG~vl~ 874 (988)
..++|||++|.|||++.++ ++++||+.+.......+...... .-...|.+|+..... ......++.+....+|
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYLG---NLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHHH---HHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHHH---HHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 4899999999999999876 99999999876443221111000 012346666654321 1122355667888888
Q ss_pred HHHhCC
Q 001974 875 EMVTGK 880 (988)
Q Consensus 875 elltg~ 880 (988)
+.++++
T Consensus 308 ~~y~~~ 313 (420)
T 2pyw_A 308 NLFNKR 313 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877754
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=1.2e-05 Score=78.79 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=45.8
Q ss_pred cccccccCCCCCCEEEcCCC-cccc----cCCcccCCCCCCcEEECCCCCCCCcC----CcccccCCCCceeecCccccc
Q 001974 47 SLSPYIGNLSFLREINLMNN-SIQG----EIPREFGRLFRLEALFLSDNDLVGEI----PANLSYCSRLTILFLGRNKLM 117 (988)
Q Consensus 47 ~~~~~l~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~i~ 117 (988)
.+...+.+-+.|++|+|++| +|.. .+.+++..-+.|+.|+|++|+|...- ...+..-+.|++|+|++|.|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33444555678888888885 7753 24455666777888888888887432 233334566777777777765
No 432
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.27 E-value=0.00095 Score=71.41 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=46.4
Q ss_pred CCCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCCCceEEEE
Q 001974 666 SSTHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGNDFKALVY 744 (988)
Q Consensus 666 ~~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~~~lv~ 744 (988)
.-++.|+.|....+|+. +.+++|+...... ...+..+|+.+++.+. +.-..++++++ ++.-++|+
T Consensus 21 ~~i~~l~gG~tN~~~~~------~~~vlR~~~~~~~-~~~~r~~E~~~l~~l~~~g~~P~~~~~~-------~~~~~~v~ 86 (301)
T 3dxq_A 21 TGPLERLGGLTNLVFRA------GDLCLRIPGKGTE-EYINRANEAVAAREAAKAGVSPEVLHVD-------PATGVMVT 86 (301)
T ss_dssp CSCEEEESCSSEEEEEE------TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC-------TTTCCEEE
T ss_pred cceeEcCCcccccccee------eeEEEECCCCCcc-ceeCHHHHHHHHHHHHHcCCCCceEEEE-------CCCCEEEE
Confidence 33788999999999998 4588898754321 1123456888887773 22224566552 13346899
Q ss_pred eec-cccchh
Q 001974 745 EFM-TNGSLE 753 (988)
Q Consensus 745 e~~-~~gsL~ 753 (988)
||+ ++.++.
T Consensus 87 e~i~~g~~l~ 96 (301)
T 3dxq_A 87 RYIAGAQTMS 96 (301)
T ss_dssp ECCTTCEECC
T ss_pred eecCCCccCC
Confidence 999 665553
No 433
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=97.17 E-value=0.0012 Score=64.67 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=66.5
Q ss_pred cchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEeeecccccc
Q 001974 750 GSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVR 829 (988)
Q Consensus 750 gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 829 (988)
-+|.+.+.... +++++.++|.++.|.+.+|.-+-.... + ..+=+.|..|++..+|.|.+.+ +.+.
T Consensus 33 vSL~eIL~~~~----------~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~-- 97 (229)
T 2yle_A 33 LSLEEILRLYN----------QPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD-- 97 (229)
T ss_dssp EEHHHHHHHHT----------SCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C-----
T ss_pred ccHHHHHHHcC----------CCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc--
Confidence 47888876554 589999999999999999888722100 1 1233456889999999987764 1110
Q ss_pred cccccccceeccccccccccccCcccCCCCCCCccchHHHHHHHHHHHhCCCC
Q 001974 830 QEVSNLTQSCSVGVRGTIGYAAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKP 882 (988)
Q Consensus 830 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p 882 (988)
.....+.|||... ...+.+.=|||+|+++|..+--..|
T Consensus 98 --------------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 --------------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp -----------------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred --------------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0233567888763 3456788999999999999884444
No 434
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.04 E-value=0.0014 Score=71.86 Aligned_cols=145 Identities=11% Similarity=0.132 Sum_probs=83.3
Q ss_pred CceeccccceeEEEEEECC-------CCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCCCc
Q 001974 668 THLIGMGSFGSVYKGAFDQ-------DGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 739 (988)
++.+..|-...+|++.... +++.|++|+.... ......+.+|.++++.+. +.-..++++++. +
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~-----~--- 125 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFP-----E--- 125 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET-----T---
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC-----C---
Confidence 4577778889999988742 3578999986432 223456778999998883 333456676632 1
Q ss_pred eEEEEeeccccchhhh-cC----------------CCCCCCchhhhHhhcC--CHHHHHHHHHHHHH-------------
Q 001974 740 KALVYEFMTNGSLENW-LH----------------PDAVPQKDVEIEIQKL--TLLQRINIAIDVAS------------- 787 (988)
Q Consensus 740 ~~lv~e~~~~gsL~~~-l~----------------~~~~~~~~~~~~~~~l--~~~~~~~i~~~i~~------------- 787 (988)
.+||||++|.++..- +. ....... ... -+.++.++..++..
T Consensus 126 -g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~------~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~ 198 (379)
T 3feg_A 126 -GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFT------KEPHWLFGTMERYLKQIQDLPPTGLPEMNLLE 198 (379)
T ss_dssp -EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSC------CSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHH
T ss_pred -ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCC------CCcccHHHHHHHHHHHHHhccCcccchhhhhh
Confidence 289999998666421 11 1000000 011 12334444433321
Q ss_pred ------HHHHH----HcC-CCCCeEeccCCCCCeeeCCC----CcEEEeeeccccc
Q 001974 788 ------AIDYL----HHH-CQEPVLHCDLKPGNVLLDND----MIAHVGDFGLARV 828 (988)
Q Consensus 788 ------~L~~L----H~~-~~~~ivH~Dlkp~NIll~~~----~~~kL~DfG~a~~ 828 (988)
.++.| ... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 199 ~~~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 199 MYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HTTHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred hHHHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 22232 221 23468999999999999876 7899999998864
No 435
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.99 E-value=0.0029 Score=71.42 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=49.3
Q ss_pred CceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCc-eEEEeecccccccCCCceEEEEee
Q 001974 668 THLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNL-VKVITSCSSIDFQGNDFKALVYEF 746 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~~~~~~lv~e~ 746 (988)
++.|+.|-...+|++.....++.+++|+...... ..-+...|..+++.+...++ .++++++. + ..||||
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~-~~idR~~E~~vl~~L~~~gl~P~ll~~~~-------~--G~v~e~ 182 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTD-EIINREREKKISCILYNKNIAKKIYVFFT-------N--GRIEEF 182 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CC-SCSCHHHHHHHHHHHTTSSSBCCEEEEET-------T--EEEEEC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChh-hhcCHHHHHHHHHHHHhcCCCCCEEEEeC-------C--eEEEEe
Confidence 4678889899999998854358899998753321 11223688999988854444 56776631 1 259999
Q ss_pred ccccchh
Q 001974 747 MTNGSLE 753 (988)
Q Consensus 747 ~~~gsL~ 753 (988)
++|.++.
T Consensus 183 I~G~~l~ 189 (458)
T 2qg7_A 183 MDGYALS 189 (458)
T ss_dssp CCSEECC
T ss_pred eCCccCC
Confidence 9886653
No 436
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.90 E-value=0.007 Score=65.26 Aligned_cols=170 Identities=13% Similarity=0.071 Sum_probs=88.6
Q ss_pred ccCHHHHHHhhCCCCC-----CceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCC--ceE
Q 001974 652 KVSYESLFKATDGFSS-----THLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRN--LVK 724 (988)
Q Consensus 652 ~~~~~~l~~~~~~y~~-----~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~ 724 (988)
.++.+++......|.. .+.++.|....+|+.... +| .+++|+.... .....+..|+.+++.+.... +.+
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEES-SC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeC-Cc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCc
Confidence 3455555555555654 345667888899999874 34 6889988642 12345667888887773222 344
Q ss_pred EEeeccccc-ccCCCceEEEEeeccccchhh------------------hcCCCCCCCchhhhHhhcCCHHHHH------
Q 001974 725 VITSCSSID-FQGNDFKALVYEFMTNGSLEN------------------WLHPDAVPQKDVEIEIQKLTLLQRI------ 779 (988)
Q Consensus 725 ~~~~~~~~~-~~~~~~~~lv~e~~~~gsL~~------------------~l~~~~~~~~~~~~~~~~l~~~~~~------ 779 (988)
++....... ....+..++||+|++|..+.. ............. ....|....
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~ 158 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNAL---SVDGWKVLWDKSEER 158 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTT---SHHHHHHHHHHHGGG
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCcc---ChHHHHHHHHHHHHH
Confidence 443211000 011245689999998865421 0111010000000 000011100
Q ss_pred ------HHHHHHHHHHHHHHcC----CCCCeEeccCCCCCeeeCCCCcEEEeeeccccc
Q 001974 780 ------NIAIDVASAIDYLHHH----CQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARV 828 (988)
Q Consensus 780 ------~i~~~i~~~L~~LH~~----~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 828 (988)
.+...+...++++++. ...+++|+|+.+.||+++++..+.++||+.+..
T Consensus 159 ~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 159 ADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp GGGTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHhhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 0011234445555431 134799999999999999876668999998753
No 437
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.83 E-value=0.0072 Score=65.34 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=82.3
Q ss_pred ceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCC--CceEEEeeccccc-ccCCCceEEEEe
Q 001974 669 HLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHR--NLVKVITSCSSID-FQGNDFKALVYE 745 (988)
Q Consensus 669 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~~~~~~~~~~-~~~~~~~~lv~e 745 (988)
+.++ |....||++... +|+.+++|+...... ....+..|..+++.+... .+.+++.. .... ...++..++|||
T Consensus 32 ~~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~-~g~~~~~~~g~~~~l~~ 107 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDE-DRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAF-NGQTLLNHQGFYFAVFP 107 (328)
T ss_dssp EEEC-CSSSEEEEECCT-TCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCB-TTBSCEEETTEEEEEEE
T ss_pred Eeec-CcccceEEEEcC-CCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeec-CCcEEEEECCEEEEEEE
Confidence 4566 888899987663 566799999863321 235677788888877322 24444443 1100 112356688999
Q ss_pred eccccchhh-----h---------c----CCCCCCC-chhhhH---------h---hcCCHH---HHHHHHHHHHHHHHH
Q 001974 746 FMTNGSLEN-----W---------L----HPDAVPQ-KDVEIE---------I---QKLTLL---QRINIAIDVASAIDY 791 (988)
Q Consensus 746 ~~~~gsL~~-----~---------l----~~~~~~~-~~~~~~---------~---~~l~~~---~~~~i~~~i~~~L~~ 791 (988)
|++|..+.. + + ....... ...... . ..++.. .....+.+++..+..
T Consensus 108 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (328)
T 1zyl_A 108 SVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTA 187 (328)
T ss_dssp CCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 998755421 0 0 0000000 000000 0 001110 111122222222322
Q ss_pred HHc-CCCCCeEeccCCCCCeeeCCCCcEEEeeeccccc
Q 001974 792 LHH-HCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARV 828 (988)
Q Consensus 792 LH~-~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 828 (988)
... .....++|||+++.||+++ + .+.++||+.+..
T Consensus 188 ~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 188 HWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp HCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 211 1234689999999999999 4 899999998764
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.82 E-value=0.0023 Score=71.93 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=50.7
Q ss_pred CceeccccceeEEEEEECC-------CCeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCCCc
Q 001974 668 THLIGMGSFGSVYKGAFDQ-------DGTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 739 (988)
++.|+.|....||++.... .++.+++|+.... .....+..|..+++.+. +.-..++++.+. +
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~-----~--- 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS-----G--- 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET-----T---
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC-----C---
Confidence 4678888899999998752 2578999998431 11145668999988884 333456666531 1
Q ss_pred eEEEEeeccccchh
Q 001974 740 KALVYEFMTNGSLE 753 (988)
Q Consensus 740 ~~lv~e~~~~gsL~ 753 (988)
.+|+||++|.++.
T Consensus 148 -g~v~e~l~G~~l~ 160 (429)
T 1nw1_A 148 -GRLEEYIPSRPLS 160 (429)
T ss_dssp -EEEECCCCEEECC
T ss_pred -CEEEEEeCCcccC
Confidence 3899999875553
No 439
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.82 E-value=0.00019 Score=70.21 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=8.4
Q ss_pred ccccCCCCcEEEeeccc
Q 001974 298 SLANCSNLRTLIFAANK 314 (988)
Q Consensus 298 ~l~~l~~L~~L~Ls~N~ 314 (988)
.+...+.|+.|+++.|.
T Consensus 152 aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 152 AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHCSSCCEEECCCCC
T ss_pred HHHhCCCcCeEeccCCC
Confidence 34444555555555443
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0037 Score=57.03 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=27.1
Q ss_pred EEEcCCCCCc-ccccccccCCCCCCEEEcCCCcccccCCcccCCCCCCcEEECCCCCC
Q 001974 36 VLNLRSKGLS-GSLSPYIGNLSFLREINLMNNSIQGEIPREFGRLFRLEALFLSDNDL 92 (988)
Q Consensus 36 ~l~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 92 (988)
.+|.++++++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555566554 23443221 2355555555555544444455555555555555544
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0022 Score=58.51 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=35.6
Q ss_pred CEEEcCCCccc-ccCCcccCCCCCCcEEECCCCCCCCcCCcccccCCCCceeecCccccc
Q 001974 59 REINLMNNSIQ-GEIPREFGRLFRLEALFLSDNDLVGEIPANLSYCSRLTILFLGRNKLM 117 (988)
Q Consensus 59 ~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~ 117 (988)
..++.++++++ ..+|..+ -.+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777776 2344332 235677777777777555566666667777777766553
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.54 E-value=0.004 Score=68.65 Aligned_cols=75 Identities=11% Similarity=0.166 Sum_probs=45.2
Q ss_pred CceeccccceeEEEEEECC--------CCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCC-ceEEEeecccccccCCC
Q 001974 668 THLIGMGSFGSVYKGAFDQ--------DGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRN-LVKVITSCSSIDFQGND 738 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~~ 738 (988)
.+.++.|....+|+..... .++.+++|+...... ...+...|.++++.+.... +.++++..
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--------- 107 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF--------- 107 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE---------
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec---------
Confidence 3567888889999998742 126889998754321 1123467888888874323 44666542
Q ss_pred ceEEEEeeccccch
Q 001974 739 FKALVYEFMTNGSL 752 (988)
Q Consensus 739 ~~~lv~e~~~~gsL 752 (988)
.-++||||++|.++
T Consensus 108 ~~~~v~e~i~G~~l 121 (369)
T 3c5i_A 108 NGGRIEEWLYGDPL 121 (369)
T ss_dssp TTEEEEECCCSEEC
T ss_pred CCcEEEEEecCCcC
Confidence 12689999987654
No 443
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.51 E-value=0.0098 Score=64.46 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=28.1
Q ss_pred CCCeEeccCCCCCeeeCCC----CcEEEeeecccccc
Q 001974 797 QEPVLHCDLKPGNVLLDND----MIAHVGDFGLARVR 829 (988)
Q Consensus 797 ~~~ivH~Dlkp~NIll~~~----~~~kL~DfG~a~~~ 829 (988)
...++|||+.+.||+++.+ +.+.|+||+.+...
T Consensus 182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 3479999999999999875 68999999988753
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.38 E-value=0.0081 Score=65.22 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=28.2
Q ss_pred CCeEeccCCCCCeeeCCCCcEEEeeecccccc
Q 001974 798 EPVLHCDLKPGNVLLDNDMIAHVGDFGLARVR 829 (988)
Q Consensus 798 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 829 (988)
..++|+|+.+.||++++++.+.++||+.+...
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 47999999999999998888999999887643
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.13 E-value=0.016 Score=63.80 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=83.0
Q ss_pred CceeccccceeEEEEEECC-------CCeEEEEEEeeccccc------------------hhHHHHHHHHHHHhc-CCCC
Q 001974 668 THLIGMGSFGSVYKGAFDQ-------DGTIVAIKVFNLQRHG------------------ASKSFLAECKALKNI-RHRN 721 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~-------~~~~vavK~~~~~~~~------------------~~~~~~~E~~~l~~l-~h~n 721 (988)
++.+..|-...+|++.... .++.|.+++....... ..+....|..+++.+ .+.-
T Consensus 57 v~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi 136 (401)
T 3f2s_A 57 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSL 136 (401)
T ss_dssp EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCC
Confidence 4567778888999988752 1468899987532211 011233588888888 4444
Q ss_pred ceEEEeecccccccCCCceEEEEeeccccchhhh-c----------------CCCCCCCchhhhHhhcCC--HHHHHHHH
Q 001974 722 LVKVITSCSSIDFQGNDFKALVYEFMTNGSLENW-L----------------HPDAVPQKDVEIEIQKLT--LLQRINIA 782 (988)
Q Consensus 722 iv~~~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~-l----------------~~~~~~~~~~~~~~~~l~--~~~~~~i~ 782 (988)
..++++++ .+ .+|+||++|.+|..- + +....+.. .... +..+.++.
T Consensus 137 ~Pkl~~~~-----~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~------~~~~~l~~~i~~~~ 201 (401)
T 3f2s_A 137 GPKLYGIF-----PQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFN------KEPKWLFGTMEKYL 201 (401)
T ss_dssp SCCEEEEE-----TT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSC------CSCCHHHHHHHHHH
T ss_pred CCeEEEEe-----CC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCC------CCcchHHHHHHHHH
Confidence 66677763 21 289999997666321 1 01100000 0011 12222222
Q ss_pred HHH--------------------------HHHHHHHHcC-CCCCeEeccCCCCCeeeCCC------CcEEEeeeccccc
Q 001974 783 IDV--------------------------ASAIDYLHHH-CQEPVLHCDLKPGNVLLDND------MIAHVGDFGLARV 828 (988)
Q Consensus 783 ~~i--------------------------~~~L~~LH~~-~~~~ivH~Dlkp~NIll~~~------~~~kL~DfG~a~~ 828 (988)
.++ ..--++|... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 202 ~~l~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 202 KEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHCCCCSHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred HHHHhccCcchhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 221 1111233322 23468999999999999876 7899999998863
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.27 E-value=0.029 Score=62.35 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=49.7
Q ss_pred CceeccccceeEEEEEECCC-------CeEEEEEEeeccccchhHHHHHHHHHHHhcC-CCCceEEEeecccccccCCCc
Q 001974 668 THLIGMGSFGSVYKGAFDQD-------GTIVAIKVFNLQRHGASKSFLAECKALKNIR-HRNLVKVITSCSSIDFQGNDF 739 (988)
Q Consensus 668 ~~~lg~G~~g~Vy~a~~~~~-------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~~~~ 739 (988)
++.+..|-...+|+...... ++.|++|+..... ...-+..+|.++++.+. +.-..++++.+ .
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~---------~ 144 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADF---------P 144 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEE---------T
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEc---------C
Confidence 45677788889999987521 5789999875332 22234567888888883 33345566542 1
Q ss_pred eEEEEeeccccch
Q 001974 740 KALVYEFMTNGSL 752 (988)
Q Consensus 740 ~~lv~e~~~~gsL 752 (988)
-+.||||++|.++
T Consensus 145 ~~~I~efI~G~~l 157 (424)
T 3mes_A 145 EGRIEEFIDGEPL 157 (424)
T ss_dssp TEEEEECCCSEEC
T ss_pred CCEEEEEeCCccC
Confidence 2689999998765
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=93.77 E-value=0.15 Score=56.61 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.5
Q ss_pred eEeccCCCCCeee------CCCCcEEEeeecccccc
Q 001974 800 VLHCDLKPGNVLL------DNDMIAHVGDFGLARVR 829 (988)
Q Consensus 800 ivH~Dlkp~NIll------~~~~~~kL~DfG~a~~~ 829 (988)
++|+|+.+.||++ +++..++++||.+|..-
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n 281 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYN 281 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccCC
Confidence 5799999999999 45678999999988753
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=91.52 E-value=0.23 Score=34.60 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhhccccCCC
Q 001974 609 IISTLSAVLGIVMVFFLCFCWFKRRRGP 636 (988)
Q Consensus 609 ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (988)
+.+++++++++++++++.+++++||+.+
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 3344444555555555555555554443
No 449
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.00 E-value=0.3 Score=33.90 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=14.2
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhccccCCCC
Q 001974 608 AIISTLSAVLGIVMVFFLCFCWFKRRRGPS 637 (988)
Q Consensus 608 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (988)
++.+++.++++++++.+..++|++||+.++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333444445555555555455555444433
No 450
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=88.52 E-value=0.38 Score=33.33 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHHhhhhhccccCCC
Q 001974 609 IISTLSAVLGIVMVFFLCFCWFKRRRGP 636 (988)
Q Consensus 609 ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (988)
+++.+++++.++++.++.++|.|||+..
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 3344444444444445555555555544
No 451
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=79.54 E-value=2.8 Score=40.96 Aligned_cols=88 Identities=18% Similarity=0.279 Sum_probs=64.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceeccccccccccc
Q 001974 771 QKLTLLQRINIAIDVASAIDYLHHHCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGYA 850 (988)
Q Consensus 771 ~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y~ 850 (988)
+..+...+++++..|+....+++.. +|--++|+|++++.++.+++.-.|+-.. +
T Consensus 76 k~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~~~p~i~~RGik~~---------------------l 129 (215)
T 4ann_A 76 KSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRDGLPIAKTRGLQNV---------------------V 129 (215)
T ss_dssp GGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTTSCEEESCCEETTT---------------------B
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCCCCEEEEEccCccC---------------------C
Confidence 4688899999999999988777654 7889999999999999999987775432 2
Q ss_pred cCcccCCCCCCCccchHHHHHHHHHHHhCCCCCCccccC
Q 001974 851 APEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTDVMFEG 889 (988)
Q Consensus 851 aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~ 889 (988)
+|. ..+...=.-.+=|++..+++++..|+....+
T Consensus 130 ~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~l~~G 163 (215)
T 4ann_A 130 DPL-----PVSEAEFLTRYKALVICAFNEKQSFDALVEG 163 (215)
T ss_dssp SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHHHHHS
T ss_pred CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHHHHcC
Confidence 222 1122223445778889999999998754433
No 452
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=74.59 E-value=3.4 Score=27.79 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=4.2
Q ss_pred hhhhhhHHHH
Q 001974 608 AIISTLSAVL 617 (988)
Q Consensus 608 ~ii~~~~~~~ 617 (988)
.|.+++++++
T Consensus 12 aIAGiVvG~v 21 (38)
T 2k1k_A 12 EIVAVIFGLL 21 (38)
T ss_dssp HHHHHHHHHH
T ss_pred ceeeeehHHH
Confidence 3444444433
No 453
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=73.84 E-value=7.3 Score=38.19 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=60.4
Q ss_pred hcCCHHHHHHHHHHHHHHHH-HHHcCCCCCeEeccCCCCCeeeCCCCcEEEeeecccccccccccccceecccccccccc
Q 001974 771 QKLTLLQRINIAIDVASAID-YLHHHCQEPVLHCDLKPGNVLLDNDMIAHVGDFGLARVRQEVSNLTQSCSVGVRGTIGY 849 (988)
Q Consensus 771 ~~l~~~~~~~i~~~i~~~L~-~LH~~~~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~gt~~y 849 (988)
+.++..++++++..|+.... +++. -+|--++|+||++|.++.+++.-.|+-. -
T Consensus 80 ~~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~NL~f~~~~~p~i~hRGi~~---------------------~ 133 (219)
T 4ano_A 80 RKTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPENLMFNRALEPFFLHVGVKE---------------------S 133 (219)
T ss_dssp HTSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGGGEEECTTCCEEESCCEETT---------------------T
T ss_pred HhcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCceEEEeCCCcEEEEEcCCcc---------------------c
Confidence 46888999999999988877 6664 3788899999999999999998777543 2
Q ss_pred ccCcccCCCCCCCccchHHHHHHHHHHHhCCCCCC
Q 001974 850 AAPEYGLGSEVSTNGDIYSYGILLLEMVTGKKPTD 884 (988)
Q Consensus 850 ~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~ 884 (988)
++|.- .+..-=.-.+=|++..++.++..|+
T Consensus 134 lpP~e-----~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 134 LPPDE-----WDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp BSSCS-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred CCCCC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 33322 1111223356778888888888765
No 454
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=67.35 E-value=0.58 Score=52.65 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=17.8
Q ss_pred CCCceeccccceeEEEEEECCCCeEEEE------EEeeccc--cchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 001974 666 SSTHLIGMGSFGSVYKGAFDQDGTIVAI------KVFNLQR--HGASKSFLAECKALKNIRHRNLVKVITSCS 730 (988)
Q Consensus 666 ~~~~~lg~G~~g~Vy~a~~~~~~~~vav------K~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 730 (988)
.+.+.+| ||.||+|.+.....+||+ |..+... .+....+.+|..+++..+|||+++.+++..
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 4456676 999999999655567888 7654322 223356888999999999999999877643
No 455
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=62.68 E-value=4 Score=26.65 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhcccc
Q 001974 610 ISTLSAVLGIVMVFFLCFCWFKRR 633 (988)
Q Consensus 610 i~~~~~~~~~~~~~~~~~~~~~~~ 633 (988)
++.+++++.++++......|.|||
T Consensus 11 aagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 11 IATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhheEEeec
Confidence 333334333333333444444444
No 456
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=59.57 E-value=8 Score=26.41 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=4.4
Q ss_pred hhhhhhHHHHH
Q 001974 608 AIISTLSAVLG 618 (988)
Q Consensus 608 ~ii~~~~~~~~ 618 (988)
++++++.+++.
T Consensus 15 I~~~vv~Gv~l 25 (41)
T 2k9y_A 15 VIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHH
T ss_pred EEeehhHHHHH
Confidence 33344444433
No 457
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.52 E-value=27 Score=25.42 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=8.6
Q ss_pred hhhhhhhhHHHHHHHHHHHhh
Q 001974 606 LKAIISTLSAVLGIVMVFFLC 626 (988)
Q Consensus 606 ~~~ii~~~~~~~~~~~~~~~~ 626 (988)
+.++++++++++.+.+++++.
T Consensus 13 wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 458
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.65 E-value=36 Score=28.56 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=14.9
Q ss_pred CcccCCCccceeeccccccCCCCCccccCcccccccccc
Q 001974 146 PFIGNLTSLESISLAANAFGGNIPNSLGQLKELKSLGLG 184 (988)
Q Consensus 146 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 184 (988)
.+|.++++|+.+.+..+ ++.+-..+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444332 222333344444444444433
No 459
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=41.11 E-value=40 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.560 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHhhhhhccccCCC
Q 001974 609 IISTLSAVLGIVMVFFLCFCWFKRRRGP 636 (988)
Q Consensus 609 ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (988)
++.+++++.++-+++..||||.+-+|-.
T Consensus 17 v~viliavaalg~li~gcwcylrlqri~ 44 (90)
T 1zza_A 17 VIVILIAIAALGALILGCWCYLRLQRIS 44 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCSSC
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555566777777655543
No 460
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.08 E-value=47 Score=27.86 Aligned_cols=15 Identities=20% Similarity=0.126 Sum_probs=6.1
Q ss_pred cccccCccccccccc
Q 001974 121 PFEFFSLYKLKQLAM 135 (988)
Q Consensus 121 ~~~~~~l~~L~~L~L 135 (988)
..+|.++.+|+.+.+
T Consensus 36 ~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 36 DGMFSGCTALEKLIL 50 (100)
T ss_dssp TTSSTTCTTCCCEEE
T ss_pred HHHHhccCCccEEEE
Confidence 334444444444443
No 461
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=39.05 E-value=1.2e+02 Score=31.57 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=73.5
Q ss_pred CCceeccccceeEEEEEECCCCeEEEEEEeeccccchhHHHHHHHHHHHhcCCCCceEEEeeccc------------cc-
Q 001974 667 STHLIGMGSFGSVYKGAFDQDGTIVAIKVFNLQRHGASKSFLAECKALKNIRHRNLVKVITSCSS------------ID- 733 (988)
Q Consensus 667 ~~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------------~~- 733 (988)
.++....|.. .||.+.. ++..|+||-. .....+.+-.++...-.+.-|+..-+. +... ..
T Consensus 73 ~I~~s~~Gst-gvff~~t--d~~~~VVK~s---~~l~~E~l~s~LA~~LGlpiP~~Riv~-~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 73 GIERSEKGTE-GLFFVET--ESGVFIVKRS---TNIESETFCSLLCMRLGLHAPKVRVVS-SNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEECCSTTS-CEEEEEE--SSCEEEEECC---TTHHHHHHHHHHHHHHTCCCCCEEEEE-SSSHHHHHHHHHHHHHCSS
T ss_pred EEEeccCCCC-CeEEEEe--CCCEEEEeCc---HHHHHHHHHHHHHHHhCCCCCCeeEEe-eCcHHHHHHHHHHHHhhhh
Confidence 3445555654 5555555 5778899943 222334444555554455666643322 2100 00
Q ss_pred -----ccCCCceEEEEeeccccchhhhcCCCCCCCchhhhHhhcCCHHHHHHHHHHH--HHHHHHHHcCCC-CCeEe-cc
Q 001974 734 -----FQGNDFKALVYEFMTNGSLENWLHPDAVPQKDVEIEIQKLTLLQRINIAIDV--ASAIDYLHHHCQ-EPVLH-CD 804 (988)
Q Consensus 734 -----~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~i--~~~L~~LH~~~~-~~ivH-~D 804 (988)
-.......++|||.+|..|.+.-.... ...+.... +.++ +-+++.+..... -+.+. .-
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~---------~~~f~~~~----~k~LG~Ii~FDi~InN~DR~Pl~W~n~ 212 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSA---------PEVLTKST----MQQLGSLMALDVIVNNSDRLPIAWTNE 212 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSH---------HHHSCHHH----HHHHHHHHHHHHHHTCCSSSCSSSCSC
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhh---------hhhcCHHH----HHhhchhheehhhhcCCccCcccccCC
Confidence 011235669999998777765432110 01233222 2332 334555554421 12222 23
Q ss_pred CCCCCeeeCCCCc-EEEeeecccccc
Q 001974 805 LKPGNVLLDNDMI-AHVGDFGLARVR 829 (988)
Q Consensus 805 lkp~NIll~~~~~-~kL~DfG~a~~~ 829 (988)
-.++|||+++++. +.++|-+.+...
T Consensus 213 GN~~NIL~~~~n~~~~~IDhn~af~~ 238 (342)
T 1cja_A 213 GNLDNIMLSERGATVVPIDSKIIPLD 238 (342)
T ss_dssp CCGGGEEEESBTTCEEECSCCCCCCC
T ss_pred CChhheEEeCCCCeEEEEcCCccccC
Confidence 5789999977554 889999988653
No 462
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=34.90 E-value=56 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=8.6
Q ss_pred hhhhhhhhHHHHHHHHHHHhh
Q 001974 606 LKAIISTLSAVLGIVMVFFLC 626 (988)
Q Consensus 606 ~~~ii~~~~~~~~~~~~~~~~ 626 (988)
+.++++++++++.+++++++.
T Consensus 10 WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 463
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.63 E-value=1e+02 Score=18.51 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=11.1
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhh
Q 001974 607 KAIISTLSAVLGIVMVFFLCFCW 629 (988)
Q Consensus 607 ~~ii~~~~~~~~~~~~~~~~~~~ 629 (988)
+.+|+.+++.+.++.+.|.+|-|
T Consensus 6 weviaglvalltflafgfwlfky 28 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444433
No 464
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.29 E-value=1.6e+02 Score=20.21 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=7.6
Q ss_pred hhhhhhhHHHHHHHHHHHh
Q 001974 607 KAIISTLSAVLGIVMVFFL 625 (988)
Q Consensus 607 ~~ii~~~~~~~~~~~~~~~ 625 (988)
.++++++++++.+.++.++
T Consensus 12 iIi~s~l~GLllL~li~~~ 30 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLA 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 465
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.96 E-value=1.1e+02 Score=21.26 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=7.3
Q ss_pred HHHHhhhhhccccCCCCC
Q 001974 621 MVFFLCFCWFKRRRGPSK 638 (988)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~ 638 (988)
+++++...++...|+++.
T Consensus 22 ~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 333333344444444433
Done!