Query 001975
Match_columns 987
No_of_seqs 778 out of 3241
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 1.1E-70 2.3E-75 620.2 25.4 519 224-956 2-529 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 1.6E-45 3.5E-50 341.4 10.8 97 812-908 1-97 (97)
3 TIGR01628 PABP-1234 polyadenyl 100.0 4.6E-36 1E-40 357.0 22.6 276 125-441 65-368 (562)
4 TIGR01628 PABP-1234 polyadenyl 100.0 5.3E-34 1.1E-38 339.4 20.6 294 150-487 2-328 (562)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-32 3E-37 307.7 21.0 247 148-440 3-352 (352)
6 KOG0123 Polyadenylate-binding 100.0 1.7E-31 3.8E-36 301.9 13.0 271 124-441 59-353 (369)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1E-29 2.3E-34 297.9 23.3 292 150-479 4-428 (481)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-29 2.3E-34 299.7 20.2 236 149-439 59-309 (578)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-28 3.7E-33 287.6 22.9 287 124-437 62-480 (481)
10 KOG0117 Heterogeneous nuclear 100.0 5.6E-28 1.2E-32 267.5 19.3 242 148-441 83-335 (506)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9E-28 2E-32 268.9 21.0 159 276-438 2-172 (352)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-26 2.4E-31 272.9 21.9 267 149-436 176-501 (509)
13 TIGR01659 sex-lethal sex-letha 99.9 1.9E-26 4.1E-31 259.5 20.0 163 272-438 102-276 (346)
14 TIGR01622 SF-CC1 splicing fact 99.9 2.6E-26 5.7E-31 266.4 20.6 257 149-438 90-449 (457)
15 KOG0123 Polyadenylate-binding 99.9 1.1E-25 2.4E-30 254.9 17.7 283 150-489 3-315 (369)
16 KOG0145 RNA-binding protein EL 99.9 2E-25 4.4E-30 232.9 17.3 246 148-437 41-358 (360)
17 TIGR01645 half-pint poly-U bin 99.9 1.6E-24 3.4E-29 256.5 19.4 164 275-438 105-285 (612)
18 KOG0148 Apoptosis-promoting RN 99.9 1.5E-24 3.2E-29 228.2 15.2 161 277-438 62-239 (321)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 5.3E-24 1.2E-28 251.5 21.8 191 276-480 57-268 (578)
20 KOG0127 Nucleolar protein fibr 99.9 7.8E-24 1.7E-28 238.7 19.7 296 149-468 6-422 (678)
21 TIGR01645 half-pint poly-U bin 99.9 1.1E-23 2.3E-28 249.5 21.2 169 147-350 106-282 (612)
22 KOG0117 Heterogeneous nuclear 99.9 1.8E-23 3.9E-28 232.0 18.3 190 275-478 81-290 (506)
23 TIGR01622 SF-CC1 splicing fact 99.9 4.5E-23 9.8E-28 239.4 18.8 163 273-436 85-265 (457)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.1E-22 4.5E-27 236.8 18.9 164 272-437 170-375 (509)
25 KOG0145 RNA-binding protein EL 99.9 5.3E-22 1.1E-26 207.6 14.2 163 274-440 38-212 (360)
26 KOG0144 RNA-binding protein CU 99.9 2.5E-22 5.5E-27 221.9 12.1 164 275-441 32-210 (510)
27 KOG0144 RNA-binding protein CU 99.9 8.3E-22 1.8E-26 217.9 12.1 278 122-439 8-506 (510)
28 KOG0109 RNA-binding protein LA 99.8 4.6E-21 9.9E-26 203.7 9.3 149 278-438 3-151 (346)
29 KOG0131 Splicing factor 3b, su 99.8 1.4E-20 3E-25 189.2 11.4 163 275-440 7-180 (203)
30 KOG0127 Nucleolar protein fibr 99.8 7.8E-20 1.7E-24 206.7 15.7 162 278-439 6-198 (678)
31 KOG0148 Apoptosis-promoting RN 99.8 4.3E-19 9.3E-24 187.3 11.5 178 274-481 3-198 (321)
32 TIGR01659 sex-lethal sex-letha 99.8 1.9E-18 4.1E-23 195.0 11.9 164 145-352 104-275 (346)
33 KOG0124 Polypyrimidine tract-b 99.7 4.3E-18 9.3E-23 184.8 10.2 160 277-436 113-289 (544)
34 KOG0110 RNA-binding protein (R 99.7 1E-17 2.2E-22 195.2 11.2 162 278-439 516-695 (725)
35 KOG0147 Transcriptional coacti 99.7 1.1E-17 2.4E-22 190.7 10.2 222 204-436 216-527 (549)
36 KOG4206 Spliceosomal protein s 99.7 1.3E-16 2.8E-21 166.1 15.8 163 273-435 5-220 (221)
37 KOG0146 RNA-binding protein ET 99.7 4.4E-17 9.4E-22 171.5 8.6 166 276-441 18-369 (371)
38 KOG0124 Polypyrimidine tract-b 99.7 1.6E-16 3.5E-21 172.7 11.0 253 148-435 113-533 (544)
39 KOG0110 RNA-binding protein (R 99.6 2.1E-15 4.6E-20 176.1 13.5 207 273-481 381-647 (725)
40 KOG4205 RNA-binding protein mu 99.6 9.3E-16 2E-20 169.7 9.9 163 276-440 5-179 (311)
41 KOG0105 Alternative splicing f 99.6 6.7E-15 1.4E-19 148.5 12.4 149 275-425 4-176 (241)
42 KOG0147 Transcriptional coacti 99.6 7.8E-16 1.7E-20 175.8 5.7 166 271-437 173-358 (549)
43 KOG4212 RNA-binding protein hn 99.6 2.9E-12 6.3E-17 142.7 29.8 159 276-434 43-291 (608)
44 KOG0109 RNA-binding protein LA 99.5 3.6E-15 7.7E-20 159.2 5.6 149 149-354 3-152 (346)
45 KOG4212 RNA-binding protein hn 99.5 1.5E-12 3.2E-17 145.0 17.7 73 362-434 536-608 (608)
46 KOG0106 Alternative splicing f 99.5 5.6E-14 1.2E-18 147.7 5.9 150 278-433 2-167 (216)
47 KOG1548 Transcription elongati 99.4 2E-12 4.3E-17 141.3 15.5 166 273-438 130-353 (382)
48 PLN03134 glycine-rich RNA-bind 99.4 1.1E-12 2.4E-17 131.2 10.5 82 273-354 30-116 (144)
49 PLN03134 glycine-rich RNA-bind 99.4 1.3E-12 2.8E-17 130.8 10.4 78 361-438 33-115 (144)
50 KOG0131 Splicing factor 3b, su 99.3 9.8E-13 2.1E-17 133.1 4.4 164 147-355 8-180 (203)
51 KOG1457 RNA binding protein (c 99.3 9.4E-12 2E-16 129.2 11.3 149 276-424 33-273 (284)
52 KOG0120 Splicing factor U2AF, 99.3 1.6E-11 3.5E-16 142.4 14.2 165 273-437 285-492 (500)
53 PF00076 RRM_1: RNA recognitio 99.3 6.4E-12 1.4E-16 107.7 7.5 66 365-430 1-70 (70)
54 KOG1190 Polypyrimidine tract-b 99.3 6.3E-11 1.4E-15 131.7 16.2 163 276-438 149-374 (492)
55 KOG1190 Polypyrimidine tract-b 99.3 4.4E-11 9.5E-16 132.9 14.1 160 277-436 297-490 (492)
56 PF00076 RRM_1: RNA recognitio 99.3 9.7E-12 2.1E-16 106.5 7.1 66 280-345 1-70 (70)
57 KOG4205 RNA-binding protein mu 99.2 7.9E-12 1.7E-16 138.7 7.4 203 147-389 5-214 (311)
58 COG0724 RNA-binding proteins ( 99.2 3.7E-11 7.9E-16 125.4 11.8 120 277-396 115-259 (306)
59 KOG4211 Splicing factor hnRNP- 99.2 5.6E-11 1.2E-15 135.1 12.2 163 276-441 9-186 (510)
60 KOG0107 Alternative splicing f 99.2 2.9E-11 6.2E-16 122.0 7.2 77 362-438 10-86 (195)
61 KOG0107 Alternative splicing f 99.2 3.1E-11 6.7E-16 121.8 5.8 79 276-354 9-87 (195)
62 KOG0125 Ataxin 2-binding prote 99.1 1.1E-10 2.4E-15 127.1 9.0 100 335-438 73-175 (376)
63 PLN03120 nucleic acid binding 99.1 1.7E-10 3.7E-15 124.5 9.9 74 362-436 4-79 (260)
64 PF14259 RRM_6: RNA recognitio 99.1 2.5E-10 5.5E-15 99.0 8.2 66 365-430 1-70 (70)
65 smart00362 RRM_2 RNA recogniti 99.1 4.1E-10 8.8E-15 94.9 9.0 69 364-432 1-72 (72)
66 KOG0125 Ataxin 2-binding prote 99.1 2.5E-10 5.5E-15 124.3 9.4 83 273-355 92-177 (376)
67 KOG1456 Heterogeneous nuclear 99.1 1.3E-09 2.7E-14 120.2 14.0 169 270-439 24-201 (494)
68 KOG0114 Predicted RNA-binding 99.1 3.2E-10 6.9E-15 105.8 8.0 81 273-353 14-96 (124)
69 PF14259 RRM_6: RNA recognitio 99.1 3.9E-10 8.5E-15 97.8 7.5 66 280-345 1-70 (70)
70 PLN03120 nucleic acid binding 99.1 3.6E-10 7.9E-15 122.0 8.9 75 277-352 4-80 (260)
71 PF13893 RRM_5: RNA recognitio 99.0 7.8E-10 1.7E-14 92.5 8.7 56 379-434 1-56 (56)
72 KOG4660 Protein Mei2, essentia 99.0 1.6E-10 3.5E-15 133.2 6.0 161 273-436 71-249 (549)
73 KOG0114 Predicted RNA-binding 99.0 8.5E-10 1.8E-14 103.0 9.6 83 361-443 17-101 (124)
74 KOG0122 Translation initiation 99.0 3.9E-10 8.4E-15 119.0 8.2 77 361-437 188-269 (270)
75 KOG0121 Nuclear cap-binding pr 99.0 2.1E-10 4.5E-15 110.6 5.6 77 274-350 33-114 (153)
76 PLN03213 repressor of silencin 99.0 7.9E-10 1.7E-14 124.9 8.8 85 361-445 9-96 (759)
77 KOG0122 Translation initiation 99.0 6.7E-10 1.4E-14 117.2 7.7 78 275-352 187-269 (270)
78 cd00590 RRM RRM (RNA recogniti 99.0 2.9E-09 6.4E-14 90.1 9.5 70 364-433 1-74 (74)
79 smart00362 RRM_2 RNA recogniti 99.0 1.7E-09 3.7E-14 91.1 7.5 69 279-347 1-72 (72)
80 KOG0121 Nuclear cap-binding pr 99.0 1E-09 2.2E-14 105.9 6.7 75 361-435 35-114 (153)
81 KOG4207 Predicted splicing fac 98.9 8.2E-10 1.8E-14 113.9 5.9 80 271-350 7-91 (256)
82 KOG0149 Predicted RNA-binding 98.9 1.1E-09 2.3E-14 115.3 6.9 77 273-350 8-89 (247)
83 PLN03121 nucleic acid binding 98.9 2.9E-09 6.3E-14 113.6 9.8 74 362-436 5-80 (243)
84 smart00360 RRM RNA recognition 98.9 3E-09 6.5E-14 89.1 8.0 66 367-432 1-71 (71)
85 PLN03213 repressor of silencin 98.9 1.5E-09 3.3E-14 122.7 7.9 120 274-395 7-136 (759)
86 COG0724 RNA-binding proteins ( 98.9 5.6E-09 1.2E-13 109.0 11.2 75 362-436 115-194 (306)
87 KOG4207 Predicted splicing fac 98.9 1.4E-09 3E-14 112.3 5.7 77 362-438 13-94 (256)
88 KOG0113 U1 small nuclear ribon 98.9 3.4E-09 7.4E-14 114.5 7.7 78 273-350 97-179 (335)
89 PLN03121 nucleic acid binding 98.9 4.3E-09 9.3E-14 112.3 8.3 74 276-350 4-79 (243)
90 smart00360 RRM RNA recognition 98.9 5.1E-09 1.1E-13 87.7 6.7 66 282-347 1-71 (71)
91 KOG0111 Cyclophilin-type pepti 98.9 1.6E-09 3.5E-14 112.4 4.2 82 274-355 7-93 (298)
92 KOG0113 U1 small nuclear ribon 98.9 8.4E-09 1.8E-13 111.5 9.7 91 348-438 87-182 (335)
93 KOG0105 Alternative splicing f 98.8 4.6E-09 1E-13 106.8 6.3 77 361-437 5-83 (241)
94 cd00590 RRM RRM (RNA recogniti 98.8 1.1E-08 2.3E-13 86.7 7.5 70 279-348 1-74 (74)
95 KOG1456 Heterogeneous nuclear 98.8 8.5E-08 1.8E-12 106.1 16.1 167 271-437 114-363 (494)
96 PF13893 RRM_5: RNA recognitio 98.8 1E-08 2.2E-13 85.7 5.9 56 294-349 1-56 (56)
97 KOG0111 Cyclophilin-type pepti 98.8 4.3E-09 9.2E-14 109.4 4.0 81 361-441 9-94 (298)
98 KOG0149 Predicted RNA-binding 98.8 9.5E-09 2.1E-13 108.3 6.3 79 359-438 9-92 (247)
99 KOG0130 RNA-binding protein RB 98.8 1.2E-08 2.5E-13 99.4 6.1 82 357-438 67-153 (170)
100 KOG0108 mRNA cleavage and poly 98.7 1.7E-08 3.7E-13 116.9 6.8 77 278-354 19-100 (435)
101 KOG0126 Predicted RNA-binding 98.7 2.7E-09 5.9E-14 108.4 -0.6 75 275-349 33-112 (219)
102 KOG0130 RNA-binding protein RB 98.7 2.5E-08 5.4E-13 97.2 5.3 82 272-353 67-153 (170)
103 KOG0108 mRNA cleavage and poly 98.6 6E-08 1.3E-12 112.4 8.9 79 363-441 19-102 (435)
104 smart00361 RRM_1 RNA recogniti 98.6 8E-08 1.7E-12 84.4 7.4 57 376-432 2-70 (70)
105 KOG0120 Splicing factor U2AF, 98.6 5.6E-08 1.2E-12 113.4 8.2 165 273-439 171-371 (500)
106 KOG0129 Predicted RNA-binding 98.6 2.8E-07 6.1E-12 106.2 13.5 142 273-417 255-431 (520)
107 KOG0112 Large RNA-binding prot 98.6 3.5E-08 7.5E-13 118.9 4.6 159 273-438 368-532 (975)
108 KOG0132 RNA polymerase II C-te 98.6 7.3E-08 1.6E-12 114.5 6.9 77 277-354 421-497 (894)
109 KOG4206 Spliceosomal protein s 98.6 1.2E-07 2.7E-12 99.7 7.6 76 363-438 10-91 (221)
110 KOG0126 Predicted RNA-binding 98.5 1.2E-08 2.6E-13 103.8 -0.4 77 360-436 33-114 (219)
111 KOG0132 RNA polymerase II C-te 98.5 1.8E-07 3.9E-12 111.3 8.4 81 360-441 419-499 (894)
112 KOG0146 RNA-binding protein ET 98.5 1.7E-07 3.6E-12 100.1 6.3 81 274-354 282-367 (371)
113 KOG4454 RNA binding protein (R 98.5 4.3E-08 9.4E-13 102.2 1.3 134 274-421 6-147 (267)
114 smart00361 RRM_1 RNA recogniti 98.5 2.6E-07 5.6E-12 81.2 5.9 56 291-346 2-69 (70)
115 KOG0153 Predicted RNA-binding 98.5 3.3E-07 7.1E-12 101.2 8.0 79 357-436 223-302 (377)
116 KOG1365 RNA-binding protein Fu 98.4 1.5E-06 3.3E-11 96.7 12.0 164 274-438 158-363 (508)
117 KOG0106 Alternative splicing f 98.4 2.4E-07 5.3E-12 98.1 5.0 161 149-349 2-168 (216)
118 KOG4211 Splicing factor hnRNP- 98.4 3.4E-06 7.3E-11 97.0 13.6 206 205-426 45-347 (510)
119 KOG0153 Predicted RNA-binding 98.4 5.7E-07 1.2E-11 99.4 7.1 83 269-352 220-303 (377)
120 KOG4210 Nuclear localization s 98.3 6E-07 1.3E-11 99.6 6.1 164 275-439 86-266 (285)
121 KOG0415 Predicted peptidyl pro 98.3 6.5E-07 1.4E-11 98.7 5.8 79 360-438 237-320 (479)
122 KOG1457 RNA binding protein (c 98.3 3.5E-06 7.5E-11 88.5 9.7 63 277-339 210-273 (284)
123 KOG0128 RNA-binding protein SA 98.3 1.4E-07 2.9E-12 113.6 -0.7 139 277-436 667-814 (881)
124 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.5E-11 96.8 5.0 80 273-352 235-319 (479)
125 KOG4208 Nucleolar RNA-binding 98.2 3.5E-06 7.5E-11 87.8 7.2 81 272-352 44-130 (214)
126 KOG0226 RNA-binding proteins [ 98.1 3.2E-06 6.9E-11 90.3 4.8 160 279-438 98-271 (290)
127 KOG4208 Nucleolar RNA-binding 98.0 1.2E-05 2.7E-10 83.8 8.0 79 359-437 46-130 (214)
128 KOG2193 IGF-II mRNA-binding pr 98.0 7.4E-07 1.6E-11 100.0 -1.0 149 278-435 2-155 (584)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 98.0 5.3E-06 1.1E-10 86.1 5.1 91 810-900 5-100 (176)
130 KOG4661 Hsp27-ERE-TATA-binding 98.0 1E-05 2.2E-10 93.5 6.5 75 362-436 405-484 (940)
131 KOG0151 Predicted splicing reg 98.0 1.6E-05 3.4E-10 94.4 7.9 84 268-351 165-256 (877)
132 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.4E-05 3.1E-10 92.4 6.5 76 275-350 403-483 (940)
133 KOG0151 Predicted splicing reg 97.8 2.4E-05 5.3E-10 92.9 6.5 78 359-436 171-256 (877)
134 KOG0533 RRM motif-containing p 97.8 3.5E-05 7.6E-10 83.5 6.9 81 273-353 79-163 (243)
135 KOG0116 RasGAP SH3 binding pro 97.7 3.6E-05 7.7E-10 89.3 6.1 75 363-438 289-368 (419)
136 KOG4454 RNA binding protein (R 97.7 2.3E-05 5.1E-10 82.3 4.0 76 361-436 8-86 (267)
137 KOG0533 RRM motif-containing p 97.7 0.00011 2.5E-09 79.6 8.4 78 361-438 82-163 (243)
138 KOG0116 RasGAP SH3 binding pro 97.7 4.1E-05 8.9E-10 88.8 5.0 74 277-351 288-366 (419)
139 KOG1548 Transcription elongati 97.7 8.3E-05 1.8E-09 82.6 7.0 74 362-435 134-219 (382)
140 PF11608 Limkain-b1: Limkain b 97.6 0.00025 5.5E-09 64.8 7.9 69 363-436 3-76 (90)
141 KOG4209 Splicing factor RNPS1, 97.5 0.0001 2.2E-09 79.8 5.1 79 358-437 97-180 (231)
142 KOG4676 Splicing factor, argin 97.4 5.3E-05 1.1E-09 85.1 1.9 157 278-436 8-225 (479)
143 KOG1365 RNA-binding protein Fu 97.4 0.00043 9.2E-09 77.8 8.6 155 275-431 58-237 (508)
144 KOG4307 RNA binding protein RB 97.4 0.00024 5.3E-09 84.4 6.9 165 273-438 307-515 (944)
145 KOG4209 Splicing factor RNPS1, 97.3 0.00024 5.1E-09 76.9 5.4 80 272-352 96-180 (231)
146 PF11608 Limkain-b1: Limkain b 97.3 0.00062 1.3E-08 62.3 6.9 69 278-351 3-76 (90)
147 PF04059 RRM_2: RNA recognitio 97.3 0.00084 1.8E-08 63.4 8.1 80 363-442 2-92 (97)
148 KOG0226 RNA-binding proteins [ 97.3 0.00023 4.9E-09 76.5 4.6 77 275-351 188-269 (290)
149 KOG4210 Nuclear localization s 97.2 0.00091 2E-08 74.6 8.8 79 275-354 182-266 (285)
150 KOG0128 RNA-binding protein SA 97.2 8.9E-05 1.9E-09 90.1 -0.0 148 277-425 571-735 (881)
151 KOG0129 Predicted RNA-binding 97.2 0.0035 7.7E-08 73.2 12.7 63 270-332 363-431 (520)
152 PF08777 RRM_3: RNA binding mo 97.1 0.0009 1.9E-08 64.1 6.3 77 364-441 3-84 (105)
153 COG5175 MOT2 Transcriptional r 97.0 0.0025 5.4E-08 70.8 8.5 79 362-440 114-206 (480)
154 COG5175 MOT2 Transcriptional r 96.9 0.00078 1.7E-08 74.6 4.5 87 276-371 113-213 (480)
155 KOG1855 Predicted RNA-binding 96.7 0.0021 4.6E-08 73.4 5.6 74 351-424 220-311 (484)
156 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0057 1.2E-07 51.5 5.4 52 363-416 2-53 (53)
157 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.007 1.5E-07 57.6 6.5 74 361-436 5-91 (100)
158 KOG1855 Predicted RNA-binding 96.3 0.0036 7.7E-08 71.7 4.2 78 270-347 224-319 (484)
159 PF08777 RRM_3: RNA binding mo 96.3 0.0094 2E-07 57.1 6.4 59 278-337 2-60 (105)
160 KOG1995 Conserved Zn-finger pr 96.3 0.0036 7.8E-08 70.5 4.1 78 361-438 65-155 (351)
161 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.0084 1.8E-07 50.5 5.1 52 278-331 2-53 (53)
162 KOG3152 TBP-binding protein, a 96.0 0.0043 9.3E-08 67.1 2.8 68 361-428 73-157 (278)
163 KOG0115 RNA-binding protein p5 95.9 0.0087 1.9E-07 64.8 4.9 89 325-424 5-97 (275)
164 KOG1995 Conserved Zn-finger pr 95.8 0.0086 1.9E-07 67.5 4.4 79 274-352 63-154 (351)
165 KOG1295 Nonsense-mediated deca 95.8 0.0047 1E-07 70.3 2.2 75 810-885 5-81 (376)
166 KOG0112 Large RNA-binding prot 95.7 0.013 2.7E-07 72.4 5.6 81 273-354 451-533 (975)
167 KOG2202 U2 snRNP splicing fact 95.7 0.0056 1.2E-07 66.3 2.1 62 377-438 83-149 (260)
168 KOG1996 mRNA splicing factor [ 95.3 0.033 7.2E-07 61.3 6.5 61 376-436 300-366 (378)
169 PF08952 DUF1866: Domain of un 95.2 0.059 1.3E-06 54.5 7.4 77 359-439 24-109 (146)
170 KOG3152 TBP-binding protein, a 95.1 0.014 3E-07 63.3 2.7 69 275-343 72-157 (278)
171 KOG4307 RNA binding protein RB 95.0 0.04 8.6E-07 66.4 6.3 71 277-347 867-942 (944)
172 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.063 1.4E-06 51.2 5.4 72 276-349 5-89 (100)
173 KOG2314 Translation initiation 94.5 0.063 1.4E-06 63.5 6.2 67 275-341 56-132 (698)
174 KOG4676 Splicing factor, argin 94.3 0.042 9.1E-07 62.6 4.1 72 363-435 8-87 (479)
175 PF07576 BRAP2: BRCA1-associat 94.1 0.3 6.4E-06 47.4 9.0 85 811-898 11-96 (110)
176 KOG2193 IGF-II mRNA-binding pr 94.0 0.037 7.9E-07 63.4 3.0 78 363-441 2-80 (584)
177 KOG2314 Translation initiation 93.6 0.19 4.2E-06 59.7 8.0 74 361-434 57-141 (698)
178 KOG0804 Cytoplasmic Zn-finger 93.6 0.23 4.9E-06 57.8 8.3 81 812-896 74-154 (493)
179 KOG4849 mRNA cleavage factor I 93.1 0.073 1.6E-06 59.8 3.3 74 274-347 77-157 (498)
180 KOG2202 U2 snRNP splicing fact 93.0 0.038 8.2E-07 60.1 1.1 57 293-349 84-145 (260)
181 PF15023 DUF4523: Protein of u 93.0 0.32 7E-06 49.0 7.4 75 359-436 83-161 (166)
182 KOG2068 MOT2 transcription fac 92.3 0.083 1.8E-06 59.5 2.6 106 362-468 77-197 (327)
183 KOG2416 Acinus (induces apopto 92.1 0.12 2.7E-06 61.5 3.7 79 359-438 441-523 (718)
184 KOG2416 Acinus (induces apopto 92.0 0.11 2.3E-06 62.1 3.0 68 271-339 438-506 (718)
185 PF08952 DUF1866: Domain of un 90.6 0.43 9.3E-06 48.4 5.3 75 274-352 24-107 (146)
186 KOG1996 mRNA splicing factor [ 90.3 0.41 8.9E-06 53.0 5.2 75 276-350 280-365 (378)
187 PF15023 DUF4523: Protein of u 90.1 0.78 1.7E-05 46.4 6.5 76 272-350 81-160 (166)
188 KOG2135 Proteins containing th 89.6 0.41 8.9E-06 56.1 4.8 72 365-438 375-447 (526)
189 PF08675 RNA_bind: RNA binding 89.3 1.4 3E-05 40.9 7.0 56 277-336 9-64 (87)
190 PF04847 Calcipressin: Calcipr 89.1 0.78 1.7E-05 48.4 6.1 63 375-438 8-72 (184)
191 KOG2591 c-Mpl binding protein, 87.9 0.85 1.8E-05 54.4 5.9 73 273-347 171-247 (684)
192 KOG2068 MOT2 transcription fac 87.7 0.34 7.3E-06 54.8 2.5 77 277-353 77-164 (327)
193 KOG2591 c-Mpl binding protein, 87.0 1.3 2.9E-05 52.9 6.8 98 323-432 146-247 (684)
194 KOG4285 Mitotic phosphoprotein 86.0 3.2 6.9E-05 46.6 8.6 74 362-438 197-271 (350)
195 PF10309 DUF2414: Protein of u 86.0 2.3 4.9E-05 37.4 6.1 53 363-419 6-62 (62)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 85.8 1.1 2.4E-05 46.9 4.9 68 275-342 5-83 (176)
197 KOG4849 mRNA cleavage factor I 83.2 1.1 2.3E-05 50.8 3.6 77 363-439 81-164 (498)
198 PF08675 RNA_bind: RNA binding 83.1 4.8 0.0001 37.5 7.1 54 364-421 11-64 (87)
199 KOG4574 RNA-binding protein (c 82.1 0.96 2.1E-05 56.3 2.9 75 363-438 299-375 (1007)
200 KOG4285 Mitotic phosphoprotein 80.9 2.9 6.4E-05 46.8 5.9 64 277-343 197-260 (350)
201 PF10309 DUF2414: Protein of u 80.3 6.1 0.00013 34.7 6.4 54 277-334 5-62 (62)
202 PF04847 Calcipressin: Calcipr 77.6 2.5 5.4E-05 44.7 3.9 62 290-352 8-71 (184)
203 PF03880 DbpA: DbpA RNA bindin 77.1 5 0.00011 35.9 5.2 59 372-434 11-74 (74)
204 KOG0115 RNA-binding protein p5 77.0 2.3 5.1E-05 46.7 3.6 59 278-336 32-94 (275)
205 KOG2135 Proteins containing th 76.5 1.1 2.5E-05 52.5 1.2 79 273-353 368-447 (526)
206 KOG2253 U1 snRNP complex, subu 75.8 2.3 5E-05 52.0 3.5 72 358-433 36-107 (668)
207 PF07292 NID: Nmi/IFP 35 domai 73.2 2.7 5.9E-05 39.4 2.5 68 317-384 1-74 (88)
208 PF07576 BRAP2: BRCA1-associat 72.5 24 0.00051 34.5 8.9 63 364-426 15-81 (110)
209 PF14111 DUF4283: Domain of un 69.5 7.1 0.00015 38.9 4.8 102 292-397 36-140 (153)
210 PF11767 SET_assoc: Histone ly 67.3 14 0.0003 32.9 5.5 55 373-431 11-65 (66)
211 PF10567 Nab6_mRNP_bdg: RNA-re 64.5 64 0.0014 36.6 11.2 146 274-420 12-212 (309)
212 KOG0804 Cytoplasmic Zn-finger 62.1 16 0.00034 43.3 6.2 65 362-426 74-142 (493)
213 PF11767 SET_assoc: Histone ly 58.8 24 0.00052 31.4 5.5 55 288-346 11-65 (66)
214 KOG4574 RNA-binding protein (c 56.4 5.4 0.00012 50.1 1.4 74 279-353 300-375 (1007)
215 KOG2253 U1 snRNP complex, subu 53.8 9.4 0.0002 46.9 2.8 72 273-348 36-107 (668)
216 KOG2318 Uncharacterized conser 51.5 68 0.0015 39.3 9.2 127 272-431 169-300 (650)
217 PF03880 DbpA: DbpA RNA bindin 48.7 38 0.00081 30.3 5.2 58 288-349 12-74 (74)
218 KOG4019 Calcineurin-mediated s 46.4 22 0.00048 37.6 3.7 74 364-438 12-91 (193)
219 KOG2891 Surface glycoprotein [ 36.0 16 0.00034 40.7 0.9 63 277-339 149-247 (445)
220 PRK14548 50S ribosomal protein 32.3 91 0.002 29.1 5.1 55 364-418 22-80 (84)
221 KOG4019 Calcineurin-mediated s 30.2 31 0.00068 36.5 1.9 75 277-352 10-90 (193)
222 TIGR03636 L23_arch archaeal ri 29.8 1.1E+02 0.0024 28.1 5.1 54 364-417 15-72 (77)
223 KOG4483 Uncharacterized conser 27.3 1.3E+02 0.0028 35.5 6.2 55 361-417 390-445 (528)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-70 Score=620.18 Aligned_cols=519 Identities=50% Similarity=0.720 Sum_probs=367.8
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001975 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
++++.|...+||+++++....+..... ....+.....++|..+ .++ || .+|..+|++|+
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~~~~--------~~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~~~- 60 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSVRNS--------DRNSAGFVFPEHPPGE--SRT-FV---------SELSALFEPFN- 60 (549)
T ss_pred CccccccCCCCCCcccccccchhhccc--------ccCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhccC-
Confidence 345789999999999775432222111 1233345556777776 566 77 78888999881
Q ss_pred EEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHh
Q 001975 304 IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383 (987)
Q Consensus 304 I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelF 383 (987)
+.+ +++.+.+++.++++|+|.|||.+|++++|+++|
T Consensus 61 ---------------------------------~p~-----------~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f 96 (549)
T KOG4660|consen 61 ---------------------------------KPL-----------RPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIF 96 (549)
T ss_pred ---------------------------------CCC-----------CcCCCCcccCccceEEEEecCCcCCHHHHHHHH
Confidence 111 114555677889999999999999999999999
Q ss_pred hccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhccchhhhhccCCccc----cCC
Q 001975 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC----QIP 459 (987)
Q Consensus 384 s~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~Rrl~qq~eq~q~e~nly----kNL 459 (987)
+.||+|++|+..+..++.+||+|+|..+|++|+++|++.+|.|++|+ ++...++.+.- |....++ ..+
T Consensus 97 ~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~----~~~~~~~~~~~~p~ 168 (549)
T KOG4660|consen 97 GAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGL----QSGTSFLNHFGSPL 168 (549)
T ss_pred HhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchh----cccchhhhhccchh
Confidence 99999999999999999999999999999999999999999999999 66666652211 0011222 334
Q ss_pred CCCCCccccccccceEEEecCCCCccccccCCCCCccccccccccCCCCCCCCCCcccCcCCccccccCCCCcccccccC
Q 001975 460 FDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQFGHYEPNLSLDEMKFG 539 (987)
Q Consensus 460 p~svt~e~L~~fG~I~S~~~enG~~rgf~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (987)
..++.+.+- ..+.|. +|.|.. ++++ .++..+++.-.-+
T Consensus 169 a~s~pgg~~--------------~~~~~g-----~l~P~~----s~~~-------------------~~~~~~~~~~~~~ 206 (549)
T KOG4660|consen 169 ANSPPGGWP--------------RGQLFG-----MLSPTR----SSIL-------------------LEHISSVDGSSPG 206 (549)
T ss_pred hcCCCCCCc--------------CCccee-----eeccch----hhhh-------------------hhcchhccCcccc
Confidence 444443321 011111 122221 1111 1111111111011
Q ss_pred CC-CCCCCCCCcccccccccCCCCCCCCCcccccccccCCcccCCCCCCCccccCCCCCCCCCCCCccCCCCCCCccCCC
Q 001975 540 NQ-HPSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVSSNGHLMEPTGGVFGSPRNGSYSLHG 618 (987)
Q Consensus 540 ~~-~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g 618 (987)
+ .+-++ | .+...++.+.+|..+ .. . + |.++-...++.+ ++|
T Consensus 207 -~~~~~~~-h---q~~~~~~~~~s~a~~----~~------------------~-~--G~~~s~~~~v~t--------~S~ 248 (549)
T KOG4660|consen 207 -RETPLLN-H---QRFVEFADNRSYAFS----EP------------------R-G--GFLISNSSGVIT--------FSG 248 (549)
T ss_pred -ccccchh-h---hhhhhhccccchhhc----cc------------------C-C--ceecCCCCceEE--------ecC
Confidence 1 11221 1 223334334433211 00 0 0 332211123333 333
Q ss_pred CCccCCCCCCCCCCCCCCCcCCCCCCccCCcccCCCCCCCCCCCCCcccccCCCC-CcccccCCCCCCCCccccccccCC
Q 001975 619 NPYVWNNSNSHQQHPSSPMVWPNSPSFLNGLHANRVAHMPGFPRVPPLMLNATSP-AHHHIGSAPAVNPSLWDRQHAYAG 697 (987)
Q Consensus 619 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gsap~~~~~~~~~~~~~~~ 697 (987)
+ .++| |++.+++..| +.+.. .|||||+||+.
T Consensus 249 ~----------------~g~~-------n~~~~~r~~~------------~~~~~~~~~hi~~~Ps~------------- 280 (549)
T KOG4660|consen 249 P----------------GGVW-------NPFPSRRQRQ------------NSSSSHYEHHIGSAPSM------------- 280 (549)
T ss_pred C----------------Cccc-------CCcccccccc------------ccCcccccCccCCCccc-------------
Confidence 2 1344 3333332111 12212 38999999982
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCcccccc--cccccccCCCCccCcC-CCCCCCCcccccCCCCCCCCCccccccccch
Q 001975 698 ESPETSNFHLGSLGSGGFLGRSPSHHVDIA--SQNILSHVGGNCMDMT-KNVGMRSPQQICHLFPGRNPMMSMQTSFDSS 774 (987)
Q Consensus 698 ~~~~~~~~~~g~~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~ 774 (987)
.|+..-++++|.+..+.+.|... ....+.+..|++++.. +++++.+.++..+.|.++.-+. ...+..
T Consensus 281 -------~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~---~~~~~~ 350 (549)
T KOG4660|consen 281 -------HHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT---SQNDYP 350 (549)
T ss_pred -------ccccccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCcccccccccc---cccccc
Confidence 24445566777766665555444 2345667889998888 9999999999999999887443 345655
Q ss_pred hHHhhhccccccCCCCCcccccccccchhhhhcCCCCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccc
Q 001975 775 NERMRNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKC 854 (987)
Q Consensus 775 ~~~~r~~~~~~~~~~~~~~~~~~~~~d~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~ 854 (987)
.+..+++..||.+.+....+++++.+|+.+|++|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+|
T Consensus 351 ~~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkc 429 (549)
T KOG4660|consen 351 VELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKC 429 (549)
T ss_pred cccccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEecccccccc
Confidence 6644445558888877777899999999999999999999999999999999999999 999999999999999999999
Q ss_pred eeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEEEEeecccCHHHHHHHhccCccccCCCCccceEEecCCCCCCCC
Q 001975 855 NVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDP 934 (987)
Q Consensus 855 N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~v~yA~iQG~~ali~hf~~s~~~~~~~~~rP~~f~~~g~~~g~~ 934 (987)
|||||||||++|+++++||++|||++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ |+.|.+
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~~ 507 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGRE 507 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred CCCCCCCCccCCCCCCCccCcc
Q 001975 935 EPFPMGTNIRSRLGKPRINGNE 956 (987)
Q Consensus 935 ~~fp~~~n~~~~~~~~r~~~~~ 956 (987)
+++|...+++.+.+.++.....
T Consensus 508 ~~~p~~~~~~a~~~~s~~~~~~ 529 (549)
T KOG4660|consen 508 EPEPVKLNQDAGAGHSTNASLK 529 (549)
T ss_pred cCccccccccCCCCcccchhhh
Confidence 9999999999877777766655
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=1.6e-45 Score=341.39 Aligned_cols=97 Identities=65% Similarity=1.188 Sum_probs=96.3
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEE
Q 001975 812 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVAS 891 (987)
Q Consensus 812 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~ 891 (987)
|||||||||||||||+||+++||+.|+|+||||||||||+++||+|||||||+++++|.+|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCHHHHHHHhc
Q 001975 892 LAYARIQGKAALIAHFQ 908 (987)
Q Consensus 892 v~yA~iQG~~ali~hf~ 908 (987)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999996
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.6e-36 Score=357.01 Aligned_cols=276 Identities=22% Similarity=0.348 Sum_probs=232.6
Q ss_pred ccCCCCeeeecccCCCCCcccCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCCh-hh
Q 001975 125 NSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE-DD 202 (987)
Q Consensus 125 ~~~~g~~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpde-dD 202 (987)
..++|++|+|+|++||+++++++..+|||+||+. ++++.|++. | +.+|+|+... ..
T Consensus 65 ~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~--------------F--------~~~G~i~~~~i~~ 122 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDT--------------F--------SKFGNILSCKVAT 122 (562)
T ss_pred CEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHH--------------H--------HhcCCcceeEeee
Confidence 4589999999999999999999999999999998 999999988 8 6677777621 00
Q ss_pred hhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 001975 203 LFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFV 282 (987)
Q Consensus 203 L~sG~SkGfGFV~f~~t~eaaeeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfV 282 (987)
..+|.++|||||+ |++.++++ +|++.+||+.++ +..+.++.......+ + .......++|||
T Consensus 123 ~~~g~skg~afV~-F~~~e~A~--~Ai~~lng~~~~-~~~i~v~~~~~~~~~--------------~-~~~~~~~~~l~V 183 (562)
T TIGR01628 123 DENGKSRGYGFVH-FEKEESAK--AAIQKVNGMLLN-DKEVYVGRFIKKHER--------------E-AAPLKKFTNLYV 183 (562)
T ss_pred cCCCCcccEEEEE-ECCHHHHH--HHHHHhcccEec-CceEEEecccccccc--------------c-cccccCCCeEEE
Confidence 1267899999999 55777777 799999999998 666666554331111 0 113345689999
Q ss_pred ccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccc----cccccccccCCCCC
Q 001975 283 RNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR----RRKLDIHYSIPKDN 354 (987)
Q Consensus 283 gNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~----Gr~L~V~~a~pk~~ 354 (987)
+|||.++|+++|+++|++||+|.++++ +++++|||||+|.+.++|.+|++.|+|..+. |+.|.|.++..+.+
T Consensus 184 ~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 184 KNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred eCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 999999999999999999999999876 4678999999999999999999999999999 99999998877654
Q ss_pred CCc--------------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHH
Q 001975 355 PSE--------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETAL 416 (987)
Q Consensus 355 ~~~--------------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL 416 (987)
+.. ......+|||+||+..+++++|+++|++||.|++|+++.+ ++|||||+|.+.++|.+|+
T Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~ 343 (562)
T TIGR01628 264 REAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAV 343 (562)
T ss_pred hHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHH
Confidence 410 1223458999999999999999999999999999998643 5799999999999999999
Q ss_pred HHhCCCeeCCcEEEEEeccCCchhh
Q 001975 417 RTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 417 ~~LNG~~I~Gr~LkV~~A~pk~~Rr 441 (987)
..|||..|+|++|+|.++.+++.|+
T Consensus 344 ~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 344 TEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred HHhcCCeeCCceeEEEeccCcHHHH
Confidence 9999999999999999999998776
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.3e-34 Score=339.42 Aligned_cols=294 Identities=19% Similarity=0.278 Sum_probs=233.0
Q ss_pred ccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhhh
Q 001975 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 150 ~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~eaaeei 226 (987)
.|||+||+. ++++.|++. |. .+|.|... ..|..++.++|||||+| .+.++|+
T Consensus 2 sl~VgnLp~~vte~~L~~~--------------F~--------~~G~v~~v~v~~d~~t~~s~G~afV~F-~~~~~A~-- 56 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDL--------------FK--------PFGPVLSVRVCRDSVTRRSLGYGYVNF-QNPADAE-- 56 (562)
T ss_pred eEEEeCCCCCCCHHHHHHH--------------HH--------hcCCEEEEEEEecCCCCCcceEEEEEE-CCHHHHH--
Confidence 599999997 888888888 84 34444331 12334688999999995 4777777
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE
Q 001975 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (987)
Q Consensus 227 dAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 306 (987)
+|++.+++..+. ++.+.+... .. .........++|||+|||.++++++|+++|++||.|.+
T Consensus 57 ~Al~~ln~~~i~-gk~i~i~~s----------------~~--~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~ 117 (562)
T TIGR01628 57 RALETMNFKRLG-GKPIRIMWS----------------QR--DPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILS 117 (562)
T ss_pred HHHHHhCCCEEC-CeeEEeecc----------------cc--cccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcce
Confidence 799999999887 333322110 00 00112223568999999999999999999999999999
Q ss_pred EEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC-CcccccccceeeecCCCCCCHHHHHH
Q 001975 307 IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-SEKDANQGTLVVFNLDSSVSTEELHQ 381 (987)
Q Consensus 307 Vki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~-~~~~~~~~tLfV~NLp~svTeedLre 381 (987)
|++ +++++|||||+|.+.++|++|++.++|..+.++.|.|....++..+ .......++|||+||+.++|+++|++
T Consensus 118 ~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 118 CKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred eEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 876 4678999999999999999999999999999999999877666554 22334557899999999999999999
Q ss_pred HhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEeccCCchhh--ccchhhhhc-
Q 001975 382 IFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVA----GKQIKLEASRPGGARR--FMVQSEQEQ- 450 (987)
Q Consensus 382 lFs~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~----Gr~LkV~~A~pk~~Rr--l~qq~eq~q- 450 (987)
+|++||+|.++++..+ .+|||||+|.+.++|.+|++.|||..+. |+.|.|.+++++.++. +....++.+
T Consensus 198 ~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~ 277 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQ 277 (562)
T ss_pred HHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhh
Confidence 9999999999988643 5789999999999999999999999999 9999999999887663 221111111
Q ss_pred ------cCCccc-cCCCCCCCcccc----ccccceEEE---ecCCCCcccc
Q 001975 451 ------DDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVL 487 (987)
Q Consensus 451 ------~e~nly-kNLp~svt~e~L----~~fG~I~S~---~~enG~~rgf 487 (987)
...+|| +||+.++++++| +.||.|+++ ....|.++||
T Consensus 278 ~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~ 328 (562)
T TIGR01628 278 ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGF 328 (562)
T ss_pred hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCe
Confidence 225788 999999999999 899999998 4467888886
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.4e-32 Score=307.71 Aligned_cols=247 Identities=17% Similarity=0.290 Sum_probs=195.5
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhh
Q 001975 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~eaae 224 (987)
-.+|||+||+. ++.+.|++. | ..+|.|... ..|..+|.++|||||+|. +.++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~--------------F--------~~~G~i~~v~i~~d~~~g~s~g~afV~f~-~~~~A~ 59 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSL--------------F--------TSIGEIESCKLVRDKVTGQSLGYGFVNYV-RPEDAE 59 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHH--------------H--------HccCCEEEEEEEEcCCCCccceEEEEEEC-cHHHHH
Confidence 35899999987 888889988 8 445544431 122236889999999955 667777
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001975 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 eidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
+|++.++|..|. ++.+.+..... .......++|||+|||..+++++|+++|++||.|
T Consensus 60 --~Ai~~l~g~~l~-g~~i~v~~a~~--------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 116 (352)
T TIGR01661 60 --KAVNSLNGLRLQ-NKTIKVSYARP--------------------SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQI 116 (352)
T ss_pred --HHHhhcccEEEC-CeeEEEEeecc--------------------cccccccceEEECCccccCCHHHHHHHHhccCCE
Confidence 799999999998 44443322111 0112245789999999999999999999999999
Q ss_pred EEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCCCCc----------------c---
Q 001975 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNPSE----------------K--- 358 (987)
Q Consensus 305 ~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~G--r~L~V~~a~pk~~~~~----------------~--- 358 (987)
..+++ ++.++|||||+|.+.++|++|++.|+|..+.| .+|.|.++........ .
T Consensus 117 ~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T TIGR01661 117 ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPL 196 (352)
T ss_pred EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCc
Confidence 88865 46689999999999999999999999999877 5677777643321000 0
Q ss_pred ---------------------------------------------------------------------cccccceeeec
Q 001975 359 ---------------------------------------------------------------------DANQGTLVVFN 369 (987)
Q Consensus 359 ---------------------------------------------------------------------~~~~~tLfV~N 369 (987)
.....+|||+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~N 276 (352)
T TIGR01661 197 STILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYN 276 (352)
T ss_pred cccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeC
Confidence 00112599999
Q ss_pred CCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 001975 370 LDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 370 Lp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~R 440 (987)
||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+||+.|||..|+||+|+|.|+..+..|
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCCC
Confidence 9999999999999999999999998654 5999999999999999999999999999999999999987643
No 6
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-31 Score=301.89 Aligned_cols=271 Identities=22% Similarity=0.336 Sum_probs=230.7
Q ss_pred cccCCCCeeeecccCCCCCcccCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCCh-h
Q 001975 124 INSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE-D 201 (987)
Q Consensus 124 ~~~~~g~~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpde-d 201 (987)
...++||+|||||++||+++ ||++||+. +|++.||++ | +.+|+|||++ .
T Consensus 59 ~~~~~~~~~rim~s~rd~~~-------~~i~nl~~~~~~~~~~d~--------------f--------~~~g~ilS~kv~ 109 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDPSL-------VFIKNLDESIDNKSLYDT--------------F--------SEFGNILSCKVA 109 (369)
T ss_pred CcccCCcEEEeehhccCCce-------eeecCCCcccCcHHHHHH--------------H--------HhhcCeeEEEEE
Confidence 46899999999999999998 99999988 999999999 9 9999999933 1
Q ss_pred hhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEE
Q 001975 202 DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLF 281 (987)
Q Consensus 202 DL~sG~SkGfGFV~f~~t~eaaeeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLf 281 (987)
.-..| ++|| ||+ |+++++++ .|++.+||+.+. +.++++|.......+.. .... .....+++|
T Consensus 110 ~~~~g-~kg~-FV~-f~~e~~a~--~ai~~~ng~ll~-~kki~vg~~~~~~er~~-----------~~~~-~~~~~t~v~ 171 (369)
T KOG0123|consen 110 TDENG-SKGY-FVQ-FESEESAK--KAIEKLNGMLLN-GKKIYVGLFERKEEREA-----------PLGE-YKKRFTNVY 171 (369)
T ss_pred EcCCC-ceee-EEE-eCCHHHHH--HHHHHhcCcccC-CCeeEEeeccchhhhcc-----------cccc-hhhhhhhhh
Confidence 11145 9999 999 55777778 799999999998 77888888766322211 1111 234568999
Q ss_pred EccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCC-
Q 001975 282 VRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS- 356 (987)
Q Consensus 282 VgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~- 356 (987)
|+|++.+++++.|.++|..||+|.++.+ .+++++|+||.|++.++|..|++.|++..+.+..+.|..+..+.+..
T Consensus 172 vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~ 251 (369)
T KOG0123|consen 172 VKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREA 251 (369)
T ss_pred eeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHH
Confidence 9999999999999999999999999975 57789999999999999999999999999999999998887754321
Q ss_pred -------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHh
Q 001975 357 -------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 357 -------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~----~skG~aFVeF~d~edA~kAL~~L 419 (987)
.......+|||+||+..++.+.|+++|+.||+|.+++++. ..+||+||+|.+.++|.+|+..+
T Consensus 252 ~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~ 331 (369)
T KOG0123|consen 252 ELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEM 331 (369)
T ss_pred HHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhh
Confidence 1133456999999999999999999999999999988864 36899999999999999999999
Q ss_pred CCCeeCCcEEEEEeccCCchhh
Q 001975 420 NRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 420 NG~~I~Gr~LkV~~A~pk~~Rr 441 (987)
|+..+.+++|.|.+++.+..|+
T Consensus 332 n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 332 NGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred ChhhhcCCchhhhHHhhhccch
Confidence 9999999999999999777665
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1e-29 Score=297.85 Aligned_cols=292 Identities=16% Similarity=0.177 Sum_probs=212.0
Q ss_pred ccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHH
Q 001975 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDL 228 (987)
Q Consensus 150 ~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeeidA 228 (987)
.|||+||++ +++++|++. | +.+|.|.... + -.+||||||+|. +.++|+ .|
T Consensus 4 vv~V~nLp~~~te~~L~~~--------------f--------~~fG~V~~v~--i--~~~k~~afVef~-~~e~A~--~A 54 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEA--------------L--------IPFGPVSYVM--M--LPGKRQALVEFE-DEESAK--AC 54 (481)
T ss_pred EEEEcCCCCCCCHHHHHHH--------------H--------HhcCCeeEEE--E--ECCCCEEEEEeC-chHHHH--HH
Confidence 699999998 889899988 8 5556554421 1 126789999954 677777 68
Q ss_pred Hhc--cCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE
Q 001975 229 FSS--GGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (987)
Q Consensus 229 i~s--~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 306 (987)
+.. +++..+. ++.+.|........ .... + .. ..........+|||+||+..+|+++|+++|+.||+|.+
T Consensus 55 i~~~~~~~~~l~-g~~l~v~~s~~~~~---~~~~-~-~~---~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 55 VNFATSVPIYIR-GQPAFFNYSTSQEI---KRDG-N-SD---FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred HHHhhcCCceEc-CeEEEEEecCCccc---ccCC-C-Cc---ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 875 5788888 44444433221100 0000 0 00 00111223468999999999999999999999999999
Q ss_pred EEec-ccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCC--------------------CC-------
Q 001975 307 IYTA-CKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN--------------------PS------- 356 (987)
Q Consensus 307 Vkit-gksrGfAFVeF~d~e~A~kAl~~Lng~~l~G--r~L~V~~a~pk~~--------------------~~------- 356 (987)
|++. ...+++|||+|.+.++|.+|++.|||+.|.+ +.|+|.|+.+..- +.
T Consensus 126 v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~ 205 (481)
T TIGR01649 126 IVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTH 205 (481)
T ss_pred EEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccc
Confidence 9873 3334799999999999999999999999965 4677766654210 00
Q ss_pred ----c------------------------------------------------------------ccccccceeeecCCC
Q 001975 357 ----E------------------------------------------------------------KDANQGTLVVFNLDS 372 (987)
Q Consensus 357 ----~------------------------------------------------------------~~~~~~tLfV~NLp~ 372 (987)
. ...+..+|||+||++
T Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~ 285 (481)
T TIGR01649 206 RQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQ 285 (481)
T ss_pred cccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCC
Confidence 0 001345899999997
Q ss_pred -CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhcc--------
Q 001975 373 -SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFM-------- 443 (987)
Q Consensus 373 -svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~Rrl~-------- 443 (987)
.+++++|+++|++||.|.+|+++.+++|+|||+|.+.++|.+|++.|||..|.|++|+|.+++.+......
T Consensus 286 ~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR01649 286 EKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGL 365 (481)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCC
Confidence 69999999999999999999999888999999999999999999999999999999999998654311000
Q ss_pred ---chhh---------hh--------ccCCccc-cCCCCCCCcccc----ccccc--eEEEec
Q 001975 444 ---VQSE---------QE--------QDDLNLC-QIPFDDLSSGQM----VSSGV--ITSTCM 479 (987)
Q Consensus 444 ---qq~e---------q~--------q~e~nly-kNLp~svt~e~L----~~fG~--I~S~~~ 479 (987)
+... .. ....+|| +|||.++++++| ..||. |+.++.
T Consensus 366 ~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 366 TSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred cccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 0000 00 0114688 999999999999 88897 777744
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1e-29 Score=299.66 Aligned_cols=236 Identities=21% Similarity=0.304 Sum_probs=190.4
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhh
Q 001975 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~eaaee 225 (987)
.+|||+||++ ++++.|.+. |+.+ |.|... ..| .+|.++|||||+| .+.++++
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~--------------F~~~--------G~I~~vrl~~D-~sG~sRGfaFV~F-~~~e~A~- 113 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPL--------------FEKA--------GPIYELRLMMD-FSGQNRGYAFVTF-CGKEEAK- 113 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHH--------------HHhh--------CCEEEEEEEEC-CCCCccceEEEEe-CCHHHHH-
Confidence 5899999997 888888888 8444 433331 122 4889999999994 5777777
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc-E
Q 001975 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-I 304 (987)
Q Consensus 226 idAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~-I 304 (987)
+|++.+||.++...+.+.+ . .....++|||+|||.++++++|.+.|+++++ +
T Consensus 114 -~Ai~~lng~~i~~Gr~l~V----------------~----------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 114 -EAVKLLNNYEIRPGRLLGV----------------C----------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred -HHHHHcCCCeecCCccccc----------------c----------ccccCceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 7999999999863322111 0 0123589999999999999999999999974 3
Q ss_pred EEEEe------cccccceEEEEeCCHHHHHHHHHHccC--cccccccccccccCCCCCCCcc-cccccceeeecCCCCCC
Q 001975 305 RTIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSIPKDNPSEK-DANQGTLVVFNLDSSVS 375 (987)
Q Consensus 305 ~sVki------tgksrGfAFVeF~d~e~A~kAl~~Lng--~~l~Gr~L~V~~a~pk~~~~~~-~~~~~tLfV~NLp~svT 375 (987)
..+.+ .++++|||||+|.+.++|..|++.|+. ..+.|+.|.|.|+.++....+. ....++|||+||+.+++
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~t 246 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTT 246 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCC
Confidence 33322 356899999999999999999998864 3578999999999887654322 23456899999999999
Q ss_pred HHHHHHHhhcc--CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001975 376 TEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 376 eedLrelFs~f--G~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~ 439 (987)
+++|+++|++| |+|++|++. ++||||+|++.++|++|++.|||.+|.|+.|+|.|++++..
T Consensus 247 ee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 247 EEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999 999999875 57999999999999999999999999999999999998654
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.7e-28 Score=287.63 Aligned_cols=287 Identities=17% Similarity=0.195 Sum_probs=205.7
Q ss_pred cccCCCCeeeecccCCCCCcc----------cCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeE
Q 001975 124 INSLSGNRSGINGIQSESSLF----------SSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQT 192 (987)
Q Consensus 124 ~~~~~g~~i~im~s~rd~sl~----------sSsl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~ 192 (987)
...+.|++|+|+|+.+...-+ .+....||++||.. ++.+.|+.. | ..
T Consensus 62 ~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~--------------F--------~~ 119 (481)
T TIGR01649 62 PIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQI--------------F--------NP 119 (481)
T ss_pred CceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHH--------------H--------hc
Confidence 457899999999986542111 12344699999986 888888888 8 44
Q ss_pred ecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCc-cc----------ceeccccc---ccCC-CC
Q 001975 193 IGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDD-RL----------FAVQKNSD---FVGG-VS 257 (987)
Q Consensus 193 iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeeidAi~s~nG~eLegd~-~v----------~vg~~ls~---l~k~-~~ 257 (987)
+|.|+... +..-...|+|||+|. +.++|+ .|++.+||.++.++. .+ .|.+...+ ++.. .+
T Consensus 120 ~G~V~~v~--i~~~~~~~~afVef~-~~~~A~--~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 120 YGKVLRIV--TFTKNNVFQALVEFE-SVNSAQ--HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred cCCEEEEE--EEecCCceEEEEEEC-CHHHHH--HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 55444411 001112469999955 666667 799999999997431 11 11110000 0000 00
Q ss_pred ---C----------CCCC----------C---------C------CcC---------------C--------CCCCCCCC
Q 001975 258 ---N----------QGVS----------A---------G------SVV---------------G--------EHPYGEHP 276 (987)
Q Consensus 258 ---n----------~~~~----------~---------a------~~~---------------g--------e~~~~e~~ 276 (987)
. +... . . ... . ..+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (481)
T TIGR01649 195 GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGP 274 (481)
T ss_pred CCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCC
Confidence 0 0000 0 0 000 0 00011346
Q ss_pred CcEEEEccCCC-CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001975 277 SRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (987)
Q Consensus 277 srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~ 355 (987)
+++|||+|||+ .+|+++|+++|++||.|..|++....+|||||+|.+.++|++|++.|||..|.|++|+|.++..+...
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 78999999998 69999999999999999999885556899999999999999999999999999999999887543110
Q ss_pred Cc------------c---------------------cccccceeeecCCCCCCHHHHHHHhhccCC--EEEEEEcCCC--
Q 001975 356 SE------------K---------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQHK-- 398 (987)
Q Consensus 356 ~~------------~---------------------~~~~~tLfV~NLp~svTeedLrelFs~fG~--I~sVri~~~s-- 398 (987)
.. + ..+..+|||+|||.++++++|+++|++||. |+.|++.+..
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~ 434 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE 434 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC
Confidence 00 0 023468999999999999999999999998 8889887543
Q ss_pred -CcEEEEEECCHHHHHHHHHHhCCCeeCCcE------EEEEeccCC
Q 001975 399 -HNHKFIEFYDIRAAETALRTLNRSDVAGKQ------IKLEASRPG 437 (987)
Q Consensus 399 -kG~aFVeF~d~edA~kAL~~LNG~~I~Gr~------LkV~~A~pk 437 (987)
+++|||+|.+.++|.+||..||+..|.|+. |+|.|++++
T Consensus 435 ~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 789999999999999999999999999985 999999874
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.6e-28 Score=267.46 Aligned_cols=242 Identities=20% Similarity=0.331 Sum_probs=195.0
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001975 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeei 226 (987)
..+||+++|+. +-+++|... |+...+|-.-.+ .-|-.+|.+|||+||+|. +-|+|+
T Consensus 83 G~EVfvGkIPrD~~EdeLvpl--------------fEkiG~I~elRL------MmD~~sG~nRGYAFVtf~-~Ke~Aq-- 139 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPL--------------FEKIGKIYELRL------MMDPFSGDNRGYAFVTFC-TKEEAQ-- 139 (506)
T ss_pred CceEEecCCCccccchhhHHH--------------HHhccceeeEEE------eecccCCCCcceEEEEee-cHHHHH--
Confidence 45799999987 666666666 744443321111 123348999999999966 555555
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc-EE
Q 001975 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-IR 305 (987)
Q Consensus 227 dAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~-I~ 305 (987)
.||+.+|+.|+...+.+ +.+. ....+.|||+|||.+.++++|++.|++.++ |+
T Consensus 140 ~Aik~lnn~Eir~GK~i--gvc~------------------------Svan~RLFiG~IPK~k~keeIlee~~kVteGVv 193 (506)
T KOG0117|consen 140 EAIKELNNYEIRPGKLL--GVCV------------------------SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVV 193 (506)
T ss_pred HHHHHhhCccccCCCEe--EEEE------------------------eeecceeEeccCCccccHHHHHHHHHhhCCCee
Confidence 59999999999744332 1211 235689999999999999999999999996 55
Q ss_pred EEEe------cccccceEEEEeCCHHHHHHHHHHccC--cccccccccccccCCCCCCCccc-ccccceeeecCCCCCCH
Q 001975 306 TIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSIPKDNPSEKD-ANQGTLVVFNLDSSVST 376 (987)
Q Consensus 306 sVki------tgksrGfAFVeF~d~e~A~kAl~~Lng--~~l~Gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~svTe 376 (987)
+|.+ ..++||||||+|++...|..|.+.|-. ..+.|..+.|.|+.|..+..+.. ..-+.|||+||+.++|+
T Consensus 194 dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTe 273 (506)
T KOG0117|consen 194 DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTE 273 (506)
T ss_pred EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhH
Confidence 5543 578999999999999999999987743 56889999999999998775442 34468999999999999
Q ss_pred HHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 001975 377 EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 377 edLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~Rr 441 (987)
|.|+++|++||.|++|+.+ +.||||.|.+.++|.+|++.+||++|+|..|.|.+|+|..+++
T Consensus 274 E~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 274 ETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999877 4599999999999999999999999999999999999987665
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=9e-28 Score=268.89 Aligned_cols=159 Identities=22% Similarity=0.408 Sum_probs=143.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
+.++|||+|||.+++|++|+++|++||+|.+|++ +++++|||||+|.+.++|++||+.|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999876 57789999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001975 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
++... ....+|||.|||..+++++|+++|++||.|..+++..+ .+|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76543 34568999999999999999999999999999887543 5789999999999999999999999998
Q ss_pred C--cEEEEEeccCCc
Q 001975 426 G--KQIKLEASRPGG 438 (987)
Q Consensus 426 G--r~LkV~~A~pk~ 438 (987)
| .+|.|.++..+.
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678999886544
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.1e-26 Score=272.86 Aligned_cols=267 Identities=16% Similarity=0.188 Sum_probs=186.9
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhh
Q 001975 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILp--dedDL~sG~SkGfGFV~f~~t~eaaee 225 (987)
..|||+||+. ++.+.|++. |... +....++...+ ...++.....+|||||+|. +.++|+
T Consensus 176 r~lyVgnLp~~~t~~~l~~~--------------F~~~--~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~-~~e~A~- 237 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDF--------------FNDL--MIATGYHKAEDGKHVSSVNINKEKNFAFLEFR-TVEEAT- 237 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHHH--HHhcCCCCCCCCCceEEEEECCCCCEEEEEeC-CHHHHh-
Confidence 4699999998 888788877 5321 11111111111 1112234557899999955 666666
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCC--CC-----CCCCCCCCc--CCCCCCCCCCCcEEEEccCCCCCChHHHHH
Q 001975 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGG--VS-----NQGVSAGSV--VGEHPYGEHPSRTLFVRNINSNVEDSELKA 296 (987)
Q Consensus 226 idAi~s~nG~eLegd~~v~vg~~ls~l~k~--~~-----n~~~~~a~~--~ge~~~~e~~srtLfVgNLP~~vTEedLre 296 (987)
.|+ .++|+.|.| ..+.+.+........ .. +........ ...........++|||+|||..+|+++|++
T Consensus 238 -~Al-~l~g~~~~g-~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 238 -FAM-ALDSIIYSN-VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred -hhh-cCCCeEeeC-ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 577 599999984 444444322111000 00 000000000 000011234568999999999999999999
Q ss_pred hhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc--------------
Q 001975 297 LFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE-------------- 357 (987)
Q Consensus 297 lFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~-------------- 357 (987)
+|++||.|..+.+ ++.++|||||+|.+.++|..|++.|+|..|.|+.|.|.++........
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLA 394 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccc
Confidence 9999999998865 577899999999999999999999999999999999988754321100
Q ss_pred ----------ccccccceeeecCCCC--C--------CHHHHHHHhhccCCEEEEEEcCC--------CCcEEEEEECCH
Q 001975 358 ----------KDANQGTLVVFNLDSS--V--------STEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDI 409 (987)
Q Consensus 358 ----------~~~~~~tLfV~NLp~s--v--------TeedLrelFs~fG~I~sVri~~~--------skG~aFVeF~d~ 409 (987)
...+..+|+|.|+... + ..++|+++|++||.|+.|+|+.. ..|++||+|.++
T Consensus 395 ~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~ 474 (509)
T TIGR01642 395 KALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADV 474 (509)
T ss_pred ccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCH
Confidence 0124567899999532 1 23689999999999999998643 358999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 410 RAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 410 edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
++|++|+..|||..|+|+.|.|.|...
T Consensus 475 e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 475 RSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999999999765
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.9e-26 Score=259.48 Aligned_cols=163 Identities=23% Similarity=0.411 Sum_probs=146.6
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
......++|||+|||+++||++|+++|++||+|++|++ +++++|||||+|.+.++|++|++.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 35557799999999999999999999999999999975 5778999999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCC
Q 001975 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 347 ~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG 421 (987)
.++.+.... ....+|||.|||..+|+++|+++|++||+|+.|+++.+ .++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~~----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ecccccccc----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 998765432 34568999999999999999999999999999988754 468999999999999999999999
Q ss_pred CeeCC--cEEEEEeccCCc
Q 001975 422 SDVAG--KQIKLEASRPGG 438 (987)
Q Consensus 422 ~~I~G--r~LkV~~A~pk~ 438 (987)
..+.| ++|+|.++..+.
T Consensus 258 ~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CccCCCceeEEEEECCccc
Confidence 99866 789999998755
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=2.6e-26 Score=266.41 Aligned_cols=257 Identities=19% Similarity=0.292 Sum_probs=188.5
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001975 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeeid 227 (987)
..|||+||+. ++.+.|++. |....++....+ + .|..++.++|||||+|. +.++++ +
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~--------------F~~~G~v~~v~i---~---~d~~~~~skg~afVeF~-~~e~A~--~ 146 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEF--------------FSKVGKVRDVQC---I---KDRNSRRSKGVAYVEFY-DVESVI--K 146 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHhcCCeeEEEE---e---ecCCCCCcceEEEEEEC-CHHHHH--H
Confidence 3599999998 888788877 744433322111 1 12247889999999965 666666 6
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001975 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|+. ++|..|.|. .+.+..... .++...... ..........++|||+|||..+|+++|+++|++||.|..|
T Consensus 147 Al~-l~g~~~~g~-~i~v~~~~~-----~~~~~~~~~---~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v 216 (457)
T TIGR01622 147 ALA-LTGQMLLGR-PIIVQSSQA-----EKNRAAKAA---THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDV 216 (457)
T ss_pred HHH-hCCCEECCe-eeEEeecch-----hhhhhhhcc---cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 775 788888733 333322111 001000000 0001112237999999999999999999999999999999
Q ss_pred Ee-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC---------------------------
Q 001975 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP--------------------------- 355 (987)
Q Consensus 308 ki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~--------------------------- 355 (987)
.+ +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+......
T Consensus 217 ~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (457)
T TIGR01622 217 QLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQ 296 (457)
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHH
Confidence 76 3578999999999999999999999999999999999995321000
Q ss_pred --------C-------------------------------------------------c--ccccccceeeecCCCCCC-
Q 001975 356 --------S-------------------------------------------------E--KDANQGTLVVFNLDSSVS- 375 (987)
Q Consensus 356 --------~-------------------------------------------------~--~~~~~~tLfV~NLp~svT- 375 (987)
. . ......+|+|.||....+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~ 376 (457)
T TIGR01622 297 LMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATE 376 (457)
T ss_pred HHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCccc
Confidence 0 0 012345788899854443
Q ss_pred ---------HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 376 ---------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 376 ---------eedLrelFs~fG~I~sVri~-~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
.+||++.|++||.|+.|.+. +...|++||+|.++++|.+|++.|||+.|+|+.|.|.+.....
T Consensus 377 ~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 377 EEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred ccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 37899999999999999987 5678999999999999999999999999999999999987543
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.1e-25 Score=254.88 Aligned_cols=283 Identities=19% Similarity=0.274 Sum_probs=229.7
Q ss_pred ccccccCccCCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhhhH
Q 001975 150 DIFTRKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 150 ~lFv~nL~~~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~eaaeeid 227 (987)
.|+++ +.+++..|++. | +..|.+++. ..|. + |-|||||. |.+.++++ +
T Consensus 3 sl~vg--~~v~e~~l~~~--------------f--------~~~~~v~s~rvc~d~-t--slgy~yvn-f~~~~da~--~ 52 (369)
T KOG0123|consen 3 SLYVG--PDVTEAMLFDK--------------F--------SPAGPVLSIRVCRDA-T--SLGYAYVN-FQQPADAE--R 52 (369)
T ss_pred ceecC--CcCChHHHHHH--------------h--------cccCCceeEEEeecC-C--ccceEEEe-cCCHHHHH--H
Confidence 46666 55777788888 8 778888882 2344 4 99999999 55777778 8
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001975 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|+.++|...+.|... +.. |+. +....|||+||+++++..+|.++|+.||+|.+|
T Consensus 53 A~~~~n~~~~~~~~~----rim-------------~s~---------rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~ 106 (369)
T KOG0123|consen 53 ALDTMNFDVLKGKPI----RIM-------------WSQ---------RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSC 106 (369)
T ss_pred HHHHcCCcccCCcEE----Eee-------------hhc---------cCCceeeecCCCcccCcHHHHHHHHhhcCeeEE
Confidence 999999998884432 111 111 111229999999999999999999999999999
Q ss_pred Ee---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcc----cccccceeeecCCCCCCHHHHH
Q 001975 308 YT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEK----DANQGTLVVFNLDSSVSTEELH 380 (987)
Q Consensus 308 ki---tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~----~~~~~tLfV~NLp~svTeedLr 380 (987)
++ ..-++|| ||+|++.++|++|++.+||..+.+++|.|.....+.++... ......++|.|++.+++++.|.
T Consensus 107 kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~ 185 (369)
T KOG0123|consen 107 KVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELK 185 (369)
T ss_pred EEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHH
Confidence 87 2238999 99999999999999999999999999999888777665322 2334589999999999999999
Q ss_pred HHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh--ccchhhh------
Q 001975 381 QIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR--FMVQSEQ------ 448 (987)
Q Consensus 381 elFs~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~Rr--l~qq~eq------ 448 (987)
++|..||.|..+.++++ .++|+||.|+++++|..|++.|++..+.++.+.|..++.+.++. +.++.++
T Consensus 186 ~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~ 265 (369)
T KOG0123|consen 186 DLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRS 265 (369)
T ss_pred HhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhcc
Confidence 99999999999988753 58899999999999999999999999999999999999977665 3322211
Q ss_pred -hccCCccc-cCCCCCCCcccc----ccccceEEE---ecCCCCcccccc
Q 001975 449 -EQDDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVLHS 489 (987)
Q Consensus 449 -~q~e~nly-kNLp~svt~e~L----~~fG~I~S~---~~enG~~rgf~~ 489 (987)
.+...+|| +|++..++.+.| ..||+|+++ .+++|.+.||+-
T Consensus 266 ~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gf 315 (369)
T KOG0123|consen 266 VSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGF 315 (369)
T ss_pred ccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEE
Confidence 22336889 999999999999 799999998 677888888753
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2e-25 Score=232.95 Aligned_cols=246 Identities=17% Similarity=0.280 Sum_probs=191.5
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001975 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeei 226 (987)
-.||.+.=|+. .+.+++... |.|..|||....- .|-.+|.|-|||||.|- ..+|++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSL--------------F~SiGeiEScKLv------RDKitGqSLGYGFVNYv-~p~DAe-- 97 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSL--------------FGSIGEIESCKLV------RDKITGQSLGYGFVNYV-RPKDAE-- 97 (360)
T ss_pred cceeeeeecccccCHHHHHHH--------------hhcccceeeeeee------eccccccccccceeeec-ChHHHH--
Confidence 45566666665 555555555 8565555543222 44469999999999966 566667
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE
Q 001975 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (987)
Q Consensus 227 dAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 306 (987)
+|+..+||..|. .+.+.|.-... ........+|||.+||..+|..||+.+|++||.|..
T Consensus 98 ~AintlNGLrLQ-~KTIKVSyARP--------------------Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 98 KAINTLNGLRLQ-NKTIKVSYARP--------------------SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIIT 156 (360)
T ss_pred HHHhhhcceeec-cceEEEEeccC--------------------ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhh
Confidence 799999999998 54433322111 113345678999999999999999999999999876
Q ss_pred EE-----ecccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCCC------------------------
Q 001975 307 IY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNP------------------------ 355 (987)
Q Consensus 307 Vk-----itgksrGfAFVeF~d~e~A~kAl~~Lng~~l~G--r~L~V~~a~pk~~~------------------------ 355 (987)
-+ +++.+||.+||.|...++|+.||+.|||..-.| .+|.|+|+......
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~ 236 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQ 236 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccch
Confidence 54 378999999999999999999999999988766 47888877433210
Q ss_pred -----------------------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---
Q 001975 356 -----------------------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--- 397 (987)
Q Consensus 356 -----------------------------------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~--- 397 (987)
+.......+|||-||.++.+|.-|.++|.+||.|..|+++++
T Consensus 237 ~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt 316 (360)
T KOG0145|consen 237 AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT 316 (360)
T ss_pred hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc
Confidence 000012358999999999999999999999999999998764
Q ss_pred --CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 398 --KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 398 --skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
.|||+||.+.+.++|..||..|||..+++|.|.|.|...+
T Consensus 317 nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 317 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 6899999999999999999999999999999999997654
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.6e-24 Score=256.45 Aligned_cols=164 Identities=19% Similarity=0.382 Sum_probs=145.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
...++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999976 6789999999999999999999999999999999999865
Q ss_pred CCCCCCC-------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHH
Q 001975 350 IPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 350 ~pk~~~~-------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~ 417 (987)
....... ......++|||+||+.++++++|+++|+.||.|++|++..+ ++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4332110 11223468999999999999999999999999999998653 68999999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCc
Q 001975 418 TLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 418 ~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
.||+..|+|+.|+|.++.++-
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999988643
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.5e-24 Score=228.23 Aligned_cols=161 Identities=20% Similarity=0.439 Sum_probs=148.7
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
.--|||+.|...++-++|++.|.+||+|.++++ ++++|||+||.|.++++|++||..|||+.|.+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 567999999999999999999999999999875 799999999999999999999999999999999999999988
Q ss_pred CCCCC------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Q 001975 352 KDNPS------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 352 k~~~~------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~L 419 (987)
|.... ......++|||+||+..++|++|++.|++||.|.+||+.++ +||+||.|++.|+|.+||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHh
Confidence 76431 12235679999999999999999999999999999999986 899999999999999999999
Q ss_pred CCCeeCCcEEEEEeccCCc
Q 001975 420 NRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 420 NG~~I~Gr~LkV~~A~pk~ 438 (987)
|+.+|+|..|++.|.+...
T Consensus 221 Nntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cCceeCceEEEEeccccCC
Confidence 9999999999999988655
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=5.3e-24 Score=251.55 Aligned_cols=191 Identities=21% Similarity=0.289 Sum_probs=160.8
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccc-cccccccccC
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~-Gr~L~V~~a~ 350 (987)
..++|||+|||.+++|++|+++|++||.|.+|++ ++++||||||+|.+.++|++||+.||+..+. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4589999999999999999999999999999975 5789999999999999999999999999885 7888776653
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEc------CCCCcEEEEEECCHHHHHHHHHHhCCC-
Q 001975 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDT------QHKHNHKFIEFYDIRAAETALRTLNRS- 422 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~-I~sVri~------~~skG~aFVeF~d~edA~kAL~~LNG~- 422 (987)
..++|||+|||.++++++|+++|++++. ++++.+. ..++|||||+|.+.++|++|++.|+..
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 2468999999999999999999999864 4444432 235899999999999999999988643
Q ss_pred -eeCCcEEEEEeccCCchhhccchhhhhccCCccc-cCCCCCCCcccc----ccc--cceEEEecC
Q 001975 423 -DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSS--GVITSTCMD 480 (987)
Q Consensus 423 -~I~Gr~LkV~~A~pk~~Rrl~qq~eq~q~e~nly-kNLp~svt~e~L----~~f--G~I~S~~~e 480 (987)
.+.|+.|.|+|+.++.... .+.....+.|| +||+.++++++| +.| |+|..+...
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred eEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 6789999999998865321 12223346799 999999999999 788 999998544
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.8e-24 Score=238.68 Aligned_cols=296 Identities=19% Similarity=0.289 Sum_probs=203.1
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001975 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeeid 227 (987)
..||+.+|+. +++..|.+. |.-..-+...+.+ +. --++.++|||||+|. -+||++ .
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~--------------FS~vGPik~~~vV----t~--~gs~~~RGfgfVtFa-m~ED~q--r 62 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEF--------------FSYVGPIKHAVVV----TN--KGSSEKRGFGFVTFA-MEEDVQ--R 62 (678)
T ss_pred ceEEEecCCCccchhHHHHh--------------hhcccCcceeEEe----cC--CCcccccCccceeee-hHhHHH--H
Confidence 6799999998 666555544 6222222211111 11 114559999999955 777777 6
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCC---CcCCCC---CCCCCCCcEEEEccCCCCCChHHHHHhhccc
Q 001975 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAG---SVVGEH---PYGEHPSRTLFVRNINSNVEDSELKALFEQF 301 (987)
Q Consensus 228 Ai~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a---~~~ge~---~~~e~~srtLfVgNLP~~vTEedLrelFs~f 301 (987)
|+....+..|+ .+.+.+..........-...+.+.+ .+.... .....+.-.|.|+|||+.+.+.+|+.+|+.|
T Consensus 63 A~~e~~~~kf~-Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~ 141 (678)
T KOG0127|consen 63 ALAETEQSKFE-GRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF 141 (678)
T ss_pred HHHHhhcCccc-ceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc
Confidence 88777777676 3333333322211100000000000 000000 1112346789999999999999999999999
Q ss_pred CcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC----------------------
Q 001975 302 GDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP---------------------- 355 (987)
Q Consensus 302 G~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~---------------------- 355 (987)
|.|..|.+ .++-.|||||.|.+..+|.+|++.+|+..|.||+|-|.|+.++..-
T Consensus 142 G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e 221 (678)
T KOG0127|consen 142 GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE 221 (678)
T ss_pred ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc
Confidence 99999987 4556699999999999999999999999999999999998665310
Q ss_pred --------------------Cc-cc-------------------------------------------ccccceeeecCC
Q 001975 356 --------------------SE-KD-------------------------------------------ANQGTLVVFNLD 371 (987)
Q Consensus 356 --------------------~~-~~-------------------------------------------~~~~tLfV~NLp 371 (987)
.+ .+ ....+|||+|||
T Consensus 222 ~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 222 ADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP 301 (678)
T ss_pred cccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC
Confidence 00 00 011589999999
Q ss_pred CCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHh-----CC-CeeCCcEEEEEeccCCchh
Q 001975 372 SSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTL-----NR-SDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 372 ~svTeedLrelFs~fG~I~sVri~-----~~skG~aFVeF~d~edA~kAL~~L-----NG-~~I~Gr~LkV~~A~pk~~R 440 (987)
+++|+++|.++|++||+|.++.++ ..++|.|||.|.+..+|.+||... .| ..+.||.|+|..+..+.+.
T Consensus 302 fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 302 FDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred ccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 999999999999999999998775 347899999999999999999976 23 5789999999999988765
Q ss_pred hccchhh---hhccCCccc----------cCCCCCCCcccc
Q 001975 441 RFMVQSE---QEQDDLNLC----------QIPFDDLSSGQM 468 (987)
Q Consensus 441 rl~qq~e---q~q~e~nly----------kNLp~svt~e~L 468 (987)
.-+.+.. +.-...||| ....+.++.+++
T Consensus 382 ~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm 422 (678)
T KOG0127|consen 382 ADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDM 422 (678)
T ss_pred HHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhH
Confidence 5332211 111236888 334555666555
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=1.1e-23 Score=249.47 Aligned_cols=169 Identities=12% Similarity=0.267 Sum_probs=126.9
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhh
Q 001975 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDL 223 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~eaa 223 (987)
....|||+||++ ++.+.|.+. |. .+|.|... ..|..++.++|||||+ |++.+++
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~l--------------F~--------~fG~I~sV~I~~D~~TgkskGfAFVe-F~s~e~A 162 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRA--------------FD--------PFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAA 162 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHH--------------HH--------ccCCEEEEEEeecCCCCCcCCeEEEE-eCcHHHH
Confidence 456899999998 888888888 84 34444331 1233478999999999 5577887
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001975 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
+ .|++.+||..++ ++.+.+++... ..... .............++|||+|||.++++++|+++|++||+
T Consensus 163 ~--~Ai~~lnG~~i~-GR~IkV~rp~~-----~p~a~----~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~ 230 (612)
T TIGR01645 163 Q--LALEQMNGQMLG-GRNIKVGRPSN-----MPQAQ----PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 230 (612)
T ss_pred H--HHHHhcCCeEEe-cceeeeccccc-----ccccc----cccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC
Confidence 8 799999999998 55554542111 00000 000011112234689999999999999999999999999
Q ss_pred EEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001975 304 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 304 I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
|.++++ ++++||||||+|.+.++|.+|++.||+..|+|+.|+|.++.
T Consensus 231 I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 231 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred eeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 999976 46789999999999999999999999999999999986654
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.8e-23 Score=231.98 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=165.6
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccc-cccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHY 348 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~-Gr~L~V~~ 348 (987)
...+.|||+.||.++.|++|.-+|++.|+|.++++ +|.+||||||.|.++++|++|++.||+.+|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45689999999999999999999999999999975 7899999999999999999999999999985 88899887
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEcC------CCCcEEEEEECCHHHHHHHHHHhCC
Q 001975 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQ------HKHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~-I~sVri~~------~skG~aFVeF~d~edA~kAL~~LNG 421 (987)
+. ..+.|||+|||...++++|.+.|++.++ |..|.+.+ +++|||||+|++...|..|.+.|-.
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 64 4578999999999999999999999886 66666643 4789999999999999999988754
Q ss_pred C--eeCCcEEEEEeccCCchhhccchhhhhccCCccc-cCCCCCCCcccc----ccccceEEEe
Q 001975 422 S--DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC 478 (987)
Q Consensus 422 ~--~I~Gr~LkV~~A~pk~~Rrl~qq~eq~q~e~nly-kNLp~svt~e~L----~~fG~I~S~~ 478 (987)
. .+.|..+.|+||.|+++-. .+.....+-|| +||+.++|+|.| ..||.|..|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk 290 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVK 290 (506)
T ss_pred CceeecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEee
Confidence 3 6789999999999987543 22334458899 999999999999 7788888884
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=4.5e-23 Score=239.42 Aligned_cols=163 Identities=26% Similarity=0.455 Sum_probs=144.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
.+.+.++|||+|||..+++++|+++|++||+|..|++ +++++|||||+|.+.++|++||. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4556799999999999999999999999999999976 57789999999999999999995 99999999999998
Q ss_pred ccCCCCCCCc--------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHH
Q 001975 348 YSIPKDNPSE--------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAET 414 (987)
Q Consensus 348 ~a~pk~~~~~--------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~k 414 (987)
++........ ......+|||+|||..+++++|+++|++||.|..|++.. ..+|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654332211 112357999999999999999999999999999998874 357899999999999999
Q ss_pred HHHHhCCCeeCCcEEEEEeccC
Q 001975 415 ALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 415 AL~~LNG~~I~Gr~LkV~~A~p 436 (987)
|++.|||..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999983
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=2.1e-22 Score=236.78 Aligned_cols=164 Identities=15% Similarity=0.283 Sum_probs=137.6
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhccc------------CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc
Q 001975 272 YGEHPSRTLFVRNINSNVEDSELKALFEQF------------GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~f------------G~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l 339 (987)
......++|||+|||.++|+++|+++|.+| +.|..+.+ .+.+|||||+|.+.++|..|| +|+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 345667999999999999999999999975 34555555 678999999999999999999 5999999
Q ss_pred ccccccccccCCCCCCC-------------------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001975 340 RRRKLDIHYSIPKDNPS-------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (987)
Q Consensus 340 ~Gr~L~V~~a~pk~~~~-------------------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri 394 (987)
.|+.|.|.......... .......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999996432211000 00122468999999999999999999999999999887
Q ss_pred cC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 395 TQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 395 ~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
+. .++|||||+|.+.++|.+||+.|||..|.|++|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 54 36899999999999999999999999999999999998654
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.3e-22 Score=207.58 Aligned_cols=163 Identities=23% Similarity=0.413 Sum_probs=147.0
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
....++|.|.-||.++|++||+.+|...|+|++|++ +|.+.||+||.|-++++|++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 445689999999999999999999999999999964 789999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCe
Q 001975 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
+.|.... ....+|||.+||..+|..||+++|++||.|..-||. +-++|.+||.|+..++|+.||..|||..
T Consensus 118 ARPSs~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhh----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 9987654 456799999999999999999999999999776654 4479999999999999999999999998
Q ss_pred eCC--cEEEEEeccCCchh
Q 001975 424 VAG--KQIKLEASRPGGAR 440 (987)
Q Consensus 424 I~G--r~LkV~~A~pk~~R 440 (987)
-.| .+|.|+|+....++
T Consensus 194 P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCCeEEEecCCcccc
Confidence 766 68999999765543
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.5e-22 Score=221.90 Aligned_cols=164 Identities=21% Similarity=0.418 Sum_probs=144.3
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCc-cccc--ccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~-~l~G--r~L~V 346 (987)
...-+|||+-||..++|.||+++|++||.|.+|.+ ++.++|||||.|++.++|.+|+.+|++. .|.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 45678999999999999999999999999999853 7889999999999999999999999885 5666 46778
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCC
Q 001975 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 347 ~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
+|+....++. ...++|||+-|++.++|.|++++|++||.|++|+|+++ +||||||+|.+.|.|..||++|||.
T Consensus 112 k~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 8886554442 45679999999999999999999999999999999764 7999999999999999999999998
Q ss_pred -eeCC--cEEEEEeccCCchhh
Q 001975 423 -DVAG--KQIKLEASRPGGARR 441 (987)
Q Consensus 423 -~I~G--r~LkV~~A~pk~~Rr 441 (987)
.+.| .+|.|+||.++.+|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 4655 699999999887665
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=8.3e-22 Score=217.88 Aligned_cols=278 Identities=17% Similarity=0.261 Sum_probs=201.5
Q ss_pred cccccCCCCeeeecccCCCCCcccCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCCh
Q 001975 122 PGINSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE 200 (987)
Q Consensus 122 ~~~~~~~g~~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpde 200 (987)
..+..+.|..++-+.+...+.--..+.-+|||+-+++ .++++|... | |+..+..--||+-|+
T Consensus 8 ~~~~~~~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~l--------------F---e~yg~V~einl~kDk 70 (510)
T KOG0144|consen 8 FPPSPCGGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLREL--------------F---EKYGNVYEINLIKDK 70 (510)
T ss_pred CCCCCCCCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHH--------------H---HHhCceeEEEeeccc
Confidence 3445667777777777766666666777889988876 455455544 5 333222222333344
Q ss_pred hhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEE
Q 001975 201 DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTL 280 (987)
Q Consensus 201 dDL~sG~SkGfGFV~f~~t~eaaeeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtL 280 (987)
.++.++||.||+|+...|+.+.+.|+.. -..|.|... .+.. ..+ ++|. ......++|
T Consensus 71 ---~t~~s~gcCFv~~~trk~a~~a~~Alhn--~ktlpG~~~----pvqv-----------k~A--d~E~-er~~~e~KL 127 (510)
T KOG0144|consen 71 ---STGQSKGCCFVKYYTRKEADEAINALHN--QKTLPGMHH----PVQV-----------KYA--DGER-ERIVEERKL 127 (510)
T ss_pred ---ccCcccceEEEEeccHHHHHHHHHHhhc--ccccCCCCc----ceee-----------ccc--chhh-hccccchhh
Confidence 5788999999999877777665454432 223332211 0000 001 1111 111346899
Q ss_pred EEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCc-cccc--ccccccccCCCC
Q 001975 281 FVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLDIHYSIPKD 353 (987)
Q Consensus 281 fVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~-~l~G--r~L~V~~a~pk~ 353 (987)
||+-|++.+||.|++++|++||.|++|++ .+.+||||||.|.+++.|..||+.|||. .++| .+|.|+|+.+++
T Consensus 128 Fvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 128 FVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred hhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 99999999999999999999999999976 5789999999999999999999999995 4555 478887776654
Q ss_pred CCC-----------------------------------------------------------------------------
Q 001975 354 NPS----------------------------------------------------------------------------- 356 (987)
Q Consensus 354 ~~~----------------------------------------------------------------------------- 356 (987)
++.
T Consensus 208 dk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~ 287 (510)
T KOG0144|consen 208 DKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAA 287 (510)
T ss_pred CchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccc
Confidence 210
Q ss_pred --------------------------------------------------------------------------------
Q 001975 357 -------------------------------------------------------------------------------- 356 (987)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (987)
T Consensus 288 q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~l 367 (510)
T KOG0144|consen 288 QKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANL 367 (510)
T ss_pred cCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccccccccc
Confidence
Q ss_pred ---------------------------------------------------cccccccceeeecCCCCCCHHHHHHHhhc
Q 001975 357 ---------------------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGI 385 (987)
Q Consensus 357 ---------------------------------------------------~~~~~~~tLfV~NLp~svTeedLrelFs~ 385 (987)
.+.....+|||.+||.+.-+.+|-..|..
T Consensus 368 q~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~p 447 (510)
T KOG0144|consen 368 QQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQP 447 (510)
T ss_pred ccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhcc
Confidence 00001247999999999999999999999
Q ss_pred cCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001975 386 YGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 386 fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~ 439 (987)
||.|++.++.-+ ++.|+||.|++..+|..||..|||..|++++|+|...+.+..
T Consensus 448 fG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 448 FGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred ccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 999999776432 688999999999999999999999999999999999887653
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=4.6e-21 Score=203.70 Aligned_cols=149 Identities=24% Similarity=0.397 Sum_probs=139.6
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~ 357 (987)
-+|||+|||..+++.+|+.+|++||+|.+|++ -|.||||..++...|+.||+.|++..|+|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 46999999999999999999999999999998 67899999999999999999999999999999999887663
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
....+|+|.||.+.++.+||+..|++||.|.+|+|+ ++|+||.|+-.++|..|++.||+.+|.|++++|+.+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 346789999999999999999999999999999987 579999999999999999999999999999999998875
Q ss_pred c
Q 001975 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 4
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.83 E-value=1.4e-20 Score=189.22 Aligned_cols=163 Identities=21% Similarity=0.319 Sum_probs=143.2
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
....||||+||+..++++.|.++|-+.|+|..+++ +...+|||||+|.++|+|+-|++-||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45689999999999999999999999999999975 5679999999999999999999999999999999999988
Q ss_pred CCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEE-EE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCe
Q 001975 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RD-----TQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 350 ~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sV-ri-----~~~skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
... ........+|||+||++.+++..|.+.|+.||.|... ++ .+++++||||.|.+.+.+.+|+..|||+.
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 621 1222334799999999999999999999999998652 22 24578899999999999999999999999
Q ss_pred eCCcEEEEEeccCCchh
Q 001975 424 VAGKQIKLEASRPGGAR 440 (987)
Q Consensus 424 I~Gr~LkV~~A~pk~~R 440 (987)
+..++|.|+++..++.+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999876643
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=7.8e-20 Score=206.69 Aligned_cols=162 Identities=20% Similarity=0.364 Sum_probs=145.3
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk 352 (987)
.||||++||++++.++|.++|+.+|+|..+.+ ++.+|||+||+|.-.+++++|++.+.+..|.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999875 4568999999999999999999999999999999999988765
Q ss_pred CCCCc--------------------c--cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEE
Q 001975 353 DNPSE--------------------K--DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEF 406 (987)
Q Consensus 353 ~~~~~--------------------~--~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~----skG~aFVeF 406 (987)
..... . +.+...|.|+|||+.+.+.+|+.+|+.||.|.+|.|+.+ -.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43210 0 112568999999999999999999999999999999754 358999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001975 407 YDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 407 ~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~ 439 (987)
.+..+|.+||+.+|+..|.||+|-|.||.++..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999998874
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.3e-19 Score=187.29 Aligned_cols=178 Identities=20% Similarity=0.306 Sum_probs=144.1
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~ 353 (987)
....|||||+||..+|||+-|..||.+.|.|..+++- |+ .|+|.++....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCcc
Confidence 3456999999999999999999999999999998861 11 56666665554
Q ss_pred CCCcccccc-cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001975 354 NPSEKDANQ-GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 354 ~~~~~~~~~-~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
........+ -.+||..|...++.++|++.|.+||+|.+++|++ ++|||+||.|.+.++|+.||..|||.+|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 433333332 3799999999999999999999999999999875 4799999999999999999999999999999
Q ss_pred EEEEEeccCCchhh-ccch-hhh-----hccCCccc-cCCCCCCCcccc----ccccceEEEecCC
Q 001975 428 QIKLEASRPGGARR-FMVQ-SEQ-----EQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCMDN 481 (987)
Q Consensus 428 ~LkV~~A~pk~~Rr-l~qq-~eq-----~q~e~nly-kNLp~svt~e~L----~~fG~I~S~~~en 481 (987)
.|+-.||.+|..+. ..+. .++ ..+.+.+| +|++.-++++.| ..||.|..+|...
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk 198 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK 198 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec
Confidence 99999998877444 2211 332 22346788 999998888888 9999999986543
No 32
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1.9e-18 Score=194.99 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=126.0
Q ss_pred cCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhh
Q 001975 145 SSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDL 223 (987)
Q Consensus 145 sSsl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaa 223 (987)
-+.-.+|||++|++ ++++.|++. |+...++....+ ..|..++.++|||||+| .++++|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~l--------------F~~~G~V~~v~i------~~d~~tg~srGyaFVeF-~~~e~A 162 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYAL--------------FRTIGPINTCRI------MRDYKTGYSFGYAFVDF-GSEADS 162 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHH--------------HHhcCCEEEEEE------EecCCCCccCcEEEEEE-ccHHHH
Confidence 34567899999998 888888888 844433322211 12345788999999995 577777
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001975 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
+ +|++.++|.+|. ++.+.+..... . ......++|||+|||.++|+++|+++|++||+
T Consensus 163 ~--~Ai~~LnG~~l~-gr~i~V~~a~p----------------~----~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 163 Q--RAIKNLNGITVR-NKRLKVSYARP----------------G----GESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred H--HHHHHcCCCccC-Cceeeeecccc----------------c----ccccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 7 799999999998 54443322110 0 01224578999999999999999999999999
Q ss_pred EEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCC
Q 001975 304 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPK 352 (987)
Q Consensus 304 I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~G--r~L~V~~a~pk 352 (987)
|+.+++ +++++|||||+|.+.++|++||+.|++..+.+ ++|.|.++...
T Consensus 220 V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 220 IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 998865 57788999999999999999999999998876 68888887654
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4.3e-18 Score=184.79 Aligned_cols=160 Identities=19% Similarity=0.403 Sum_probs=141.2
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
-++|||+.|...+.|+.|+..|..||+|++|.+ +++++|||||+|+-+|.|+.|++.|||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 488999999999999999999999999999975 799999999999999999999999999999999999984322
Q ss_pred CCCC-------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHh
Q 001975 352 KDNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 352 k~~~-------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~L 419 (987)
-... .+....-..|||..+.++++++||+..|+.||+|++|.+.+ ..+||+||+|.+..+-..|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 1111 11223456899999999999999999999999999999864 36899999999999999999999
Q ss_pred CCCeeCCcEEEEEeccC
Q 001975 420 NRSDVAGKQIKLEASRP 436 (987)
Q Consensus 420 NG~~I~Gr~LkV~~A~p 436 (987)
|=..++|.-|+|..+..
T Consensus 273 NlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVT 289 (544)
T ss_pred chhhcccceEecccccC
Confidence 99999999999987654
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=1e-17 Score=195.21 Aligned_cols=162 Identities=24% Similarity=0.434 Sum_probs=141.7
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecc--------cccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC--------KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitg--------ksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
++|||+||+.+.|.++|..+|.++|.|.++.+.. .+.|||||+|.+.++|+.|++.|+|+.|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999997621 13499999999999999999999999999999999998
Q ss_pred CCCCCC--C---cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHh
Q 001975 350 IPKDNP--S---EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 350 ~pk~~~--~---~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~L 419 (987)
..+... . ......+.|.|+|||...+..+++++|..||.|++|+++.. .+|||||+|-++++|.+|+.+|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 722211 0 11122458999999999999999999999999999999764 4789999999999999999999
Q ss_pred CCCeeCCcEEEEEeccCCch
Q 001975 420 NRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 420 NG~~I~Gr~LkV~~A~pk~~ 439 (987)
....+.||+|.++||.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999998764
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.72 E-value=1.1e-17 Score=190.75 Aligned_cols=222 Identities=19% Similarity=0.249 Sum_probs=156.6
Q ss_pred hccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEc
Q 001975 204 FSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVR 283 (987)
Q Consensus 204 ~sG~SkGfGFV~f~~t~eaaeeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVg 283 (987)
.++.++|.+||+|. +.+.+- -|| .+.|..+-|-. +.|. .+-..+|...+.+.. -+...-..|.+.|||+
T Consensus 216 ~s~rskgi~Yvef~-D~~sVp--~ai-aLsGqrllg~p-v~vq-----~sEaeknr~a~~s~a-~~~k~~~~p~~rl~vg 284 (549)
T KOG0147|consen 216 NSRRSKGIAYVEFC-DEQSVP--LAI-ALSGQRLLGVP-VIVQ-----LSEAEKNRAANASPA-LQGKGFTGPMRRLYVG 284 (549)
T ss_pred cchhhcceeEEEEe-cccchh--hHh-hhcCCcccCce-eEec-----ccHHHHHHHHhcccc-ccccccccchhhhhhc
Confidence 47889999999977 444443 244 45555444232 2111 111112211111100 0101122344449999
Q ss_pred cCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC---
Q 001975 284 NINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP--- 355 (987)
Q Consensus 284 NLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~--- 355 (987)
||-.+++|++|+.+|+.||.|..|.+ +|.++||+||+|.+.++|++|+..|||.+|-|+.|+|.....+...
T Consensus 285 nLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a 364 (549)
T KOG0147|consen 285 NLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEA 364 (549)
T ss_pred ccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccc
Confidence 99999999999999999999999864 7899999999999999999999999999999999998332110000
Q ss_pred -----------------------------------------------------------------Cccc-------cccc
Q 001975 356 -----------------------------------------------------------------SEKD-------ANQG 363 (987)
Q Consensus 356 -----------------------------------------------------------------~~~~-------~~~~ 363 (987)
..+. .+..
T Consensus 365 ~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~ 444 (549)
T KOG0147|consen 365 AVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQ 444 (549)
T ss_pred cccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccH
Confidence 0000 2233
Q ss_pred ceeeecC--CCCCC--------HHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001975 364 TLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 364 tLfV~NL--p~svT--------eedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
++.++|+ |...| .||+.+.|.+||+|..|.+.+++-|+.||.|.+.++|..|+.+|||.+|.||.|++.|
T Consensus 445 C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~ 524 (549)
T KOG0147|consen 445 CLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKY 524 (549)
T ss_pred HHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEE
Confidence 5566665 22222 3788899999999999999999889999999999999999999999999999999998
Q ss_pred ccC
Q 001975 434 SRP 436 (987)
Q Consensus 434 A~p 436 (987)
-..
T Consensus 525 ~~~ 527 (549)
T KOG0147|consen 525 LPL 527 (549)
T ss_pred eeh
Confidence 553
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=1.3e-16 Score=166.14 Aligned_cols=163 Identities=26% Similarity=0.454 Sum_probs=144.6
Q ss_pred CCCCCcEEEEccCCCCCChHHHHH----hhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKA----LFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLre----lFs~fG~I~sVki--tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
...+..||||.||+..+..++|++ +|++||.|..|.. +.+.||.|||.|.+.+.|-.|++.|+|..+.|++++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344666999999999999999998 9999999999975 6889999999999999999999999999999999999
Q ss_pred cccCCCCCCCcc----------------------------------------------cccccceeeecCCCCCCHHHHH
Q 001975 347 HYSIPKDNPSEK----------------------------------------------DANQGTLVVFNLDSSVSTEELH 380 (987)
Q Consensus 347 ~~a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~svTeedLr 380 (987)
+|+..+.....+ ..+...|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 998765321100 2244589999999999999999
Q ss_pred HHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecc
Q 001975 381 QIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASR 435 (987)
Q Consensus 381 elFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~-Gr~LkV~~A~ 435 (987)
.+|.+|...++|+++...++.|||+|.+...|..|...+.+..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999988999999999999999999999999886 8888888775
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.4e-17 Score=171.54 Aligned_cols=166 Identities=21% Similarity=0.407 Sum_probs=139.0
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcc-ccc--ccccccc
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRR--RKLDIHY 348 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~-l~G--r~L~V~~ 348 (987)
..++|||+-|.+.-.|+|++.+|..||+|.+|.+ .+.+||+|||.|.+..+|+.||..|+|.. +-| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5789999999999999999999999999999975 68899999999999999999999999953 333 2344433
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 001975 349 SIPKDNP------------------------------------------------------------------------- 355 (987)
Q Consensus 349 a~pk~~~------------------------------------------------------------------------- 355 (987)
+...+++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 3222110
Q ss_pred --------------------------------------------------------------------------------
Q 001975 356 -------------------------------------------------------------------------------- 355 (987)
Q Consensus 356 -------------------------------------------------------------------------------- 355 (987)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCH
Q 001975 356 ---------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDI 409 (987)
Q Consensus 356 ---------------------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~-----~~skG~aFVeF~d~ 409 (987)
.......++|||..||....+.||.+.|-.||.|.+.++. ..+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0011234799999999999999999999999999998774 34789999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 001975 410 RAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 410 edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~Rr 441 (987)
.+|+.||.+|||..|+-|+|+|.+.+||++.|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999988543
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.6e-16 Score=172.67 Aligned_cols=253 Identities=14% Similarity=0.291 Sum_probs=184.0
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCC-C-hhhhhccCCCCeeeeecCCChhhhh
Q 001975 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP-D-EDDLFSGVTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILp-d-edDL~sG~SkGfGFV~f~~t~eaae 224 (987)
+..|+++.+.. +-++.+... | ..||-|-+ + -=|..++..|||+||+ ++-.|++.
T Consensus 113 McRvYVGSIsfEl~EDtiR~A--------------F--------~PFGPIKSInMSWDp~T~kHKgFAFVE-YEvPEaAq 169 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRA--------------F--------DPFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAAQ 169 (544)
T ss_pred hHheeeeeeEEEechHHHHhh--------------c--------cCCCCcceeecccccccccccceEEEE-EeCcHHHH
Confidence 44577777765 555555544 5 34454444 1 1344689999999999 56777777
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001975 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 eidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
.|++.|||..|. .+.+.||+-.. ++- .-.+-.+...+.+...+|||..+.++.+|+||+..|+.||+|
T Consensus 170 --LAlEqMNg~mlG-GRNiKVgrPsN-----mpQ----AQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I 237 (544)
T KOG0124|consen 170 --LALEQMNGQMLG-GRNIKVGRPSN-----MPQ----AQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI 237 (544)
T ss_pred --HHHHHhcccccc-CccccccCCCC-----Ccc----cchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcce
Confidence 799999999996 66666664210 000 000001111234567899999999999999999999999999
Q ss_pred EEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC------------------------
Q 001975 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP------------------------ 355 (987)
Q Consensus 305 ~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~------------------------ 355 (987)
..|++ .+.+|||+||+|.+..+...|+..||-..++|.-|+|..+......
T Consensus 238 ~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAK 317 (544)
T KOG0124|consen 238 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAK 317 (544)
T ss_pred eeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHH
Confidence 99986 4679999999999999999999999999999998888332111000
Q ss_pred --------------------------------------------------------------------------------
Q 001975 356 -------------------------------------------------------------------------------- 355 (987)
Q Consensus 356 -------------------------------------------------------------------------------- 355 (987)
T Consensus 318 i~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~ 397 (544)
T KOG0124|consen 318 IMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGL 397 (544)
T ss_pred HHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhh
Confidence
Q ss_pred -------Cc-----------------------------------ccccccceeeecC--CCCCC---HHHHHHHhhccCC
Q 001975 356 -------SE-----------------------------------KDANQGTLVVFNL--DSSVS---TEELHQIFGIYGE 388 (987)
Q Consensus 356 -------~~-----------------------------------~~~~~~tLfV~NL--p~svT---eedLrelFs~fG~ 388 (987)
.+ +...++.|.++|+ |.+++ +.+|++.|++||.
T Consensus 398 L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~ 477 (544)
T KOG0124|consen 398 LEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGA 477 (544)
T ss_pred cchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccc
Confidence 00 0012356778887 55665 5789999999999
Q ss_pred EEEEEEcCCCCc---------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001975 389 IREIRDTQHKHN---------HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 389 I~sVri~~~skG---------~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (987)
|.+|.|.....+ .-||+|....++.+|+++|+|+.|+|+++..+...
T Consensus 478 V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 478 VNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred eeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhh
Confidence 999888654322 36999999999999999999999999999877654
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=176.11 Aligned_cols=207 Identities=20% Similarity=0.340 Sum_probs=162.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccc-eEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrG-fAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
.++..+.|+|+|||..+..++|..+|..||+|..+.+. .-| -|+|.|.+..+|++|++.|....+...++++.|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 45566899999999999999999999999999999663 334 599999999999999999999999988888866421
Q ss_pred -------CCC-------------C------------Cccc-------------ccc-cceeeecCCCCCCHHHHHHHhhc
Q 001975 352 -------KDN-------------P------------SEKD-------------ANQ-GTLVVFNLDSSVSTEELHQIFGI 385 (987)
Q Consensus 352 -------k~~-------------~------------~~~~-------------~~~-~tLfV~NLp~svTeedLrelFs~ 385 (987)
+.. . ...+ ... ++|||+||+.+++.++|..+|..
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 100 0 0000 111 24999999999999999999999
Q ss_pred cCCEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhccchhhhhccCCccc-
Q 001975 386 YGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC- 456 (987)
Q Consensus 386 fG~I~sVri~~~--------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~Rrl~qq~eq~q~e~nly- 456 (987)
+|.|.++.|... +.|||||+|.+.++|++|++.|+|+.|+|+.|.|+++..+..-..-++....+.-+.|.
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlV 618 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILV 618 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeee
Confidence 999999877532 34999999999999999999999999999999999998332222111111111234555
Q ss_pred cCCCCCCCcccc----ccccceEEEecCC
Q 001975 457 QIPFDDLSSGQM----VSSGVITSTCMDN 481 (987)
Q Consensus 457 kNLp~svt~e~L----~~fG~I~S~~~en 481 (987)
+|+|.-.+-..+ ..||+|.+++.+.
T Consensus 619 RNipFeAt~rEVr~LF~aFGqlksvRlPK 647 (725)
T KOG0110|consen 619 RNIPFEATKREVRKLFTAFGQLKSVRLPK 647 (725)
T ss_pred eccchHHHHHHHHHHHhcccceeeeccch
Confidence 999999887766 9999999996665
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.62 E-value=9.3e-16 Score=169.67 Aligned_cols=163 Identities=15% Similarity=0.342 Sum_probs=144.3
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
..++|||++|+++++++.|++.|.+||+|.+|.+ +++++||+||+|++.+...+++. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6789999999999999999999999999999865 68899999999999999999984 56678999999999998
Q ss_pred CCCCCCcccc--cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCe
Q 001975 351 PKDNPSEKDA--NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 351 pk~~~~~~~~--~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
+.....+... ...+|||+.||.+++++++++.|.+||.|..+.++- +.++|+||.|.+++++.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8876544332 356999999999999999999999999998876653 368999999999999999988 78889
Q ss_pred eCCcEEEEEeccCCchh
Q 001975 424 VAGKQIKLEASRPGGAR 440 (987)
Q Consensus 424 I~Gr~LkV~~A~pk~~R 440 (987)
|+|+.+.|..|.|++..
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999998754
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=6.7e-15 Score=148.53 Aligned_cols=149 Identities=19% Similarity=0.296 Sum_probs=127.3
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEeccc--ccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK--HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgk--srGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk 352 (987)
..+++|||+|||.++-+.+|+++|-+||.|+.|.+... .-+||||+|++..+|+.||..-+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999987433 3469999999999999999999999999999999987543
Q ss_pred CCC----------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHH
Q 001975 353 DNP----------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIR 410 (987)
Q Consensus 353 ~~~----------------------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~e 410 (987)
... ......+..+.|.+||++-+++||+++..+-|.|....+.++ +++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehh
Confidence 211 011123458999999999999999999999999998887664 69999999999
Q ss_pred HHHHHHHHhCCCeeC
Q 001975 411 AAETALRTLNRSDVA 425 (987)
Q Consensus 411 dA~kAL~~LNG~~I~ 425 (987)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999988876553
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.59 E-value=7.8e-16 Score=175.82 Aligned_cols=166 Identities=23% Similarity=0.365 Sum_probs=143.0
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001975 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~ 345 (987)
..+++..++||+--|+..++..+|.++|+.+|+|..|++ ++.++|.|||+|.|.+....|| .|.|+.+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 346677899999999999999999999999999999965 6779999999999999999999 6999999999999
Q ss_pred ccccCCCCCCCcc----------cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHH
Q 001975 346 IHYSIPKDNPSEK----------DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIR 410 (987)
Q Consensus 346 V~~a~pk~~~~~~----------~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~e 410 (987)
|+.....++.... ..+-..|||+||..++++++|+.+|+.||.|..|.++.+ ++|||||+|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 9876443332110 111223999999999999999999999999999987654 6899999999999
Q ss_pred HHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 411 AAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 411 dA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
+|.+|+..|||.+|.|+.|+|.....+
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999876543
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.56 E-value=2.9e-12 Score=142.65 Aligned_cols=159 Identities=20% Similarity=0.360 Sum_probs=131.4
Q ss_pred CCcEEEEccCCCCCChHHHHHhhc-ccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001975 276 PSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs-~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
..|.+||.|||+++...+|+++|. +.|+|..|.+ .++.||+|.|+|+++|.+++|++.||...+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 457799999999999999999997 7789999865 79999999999999999999999999999999999994321
Q ss_pred CCC-----------------------------------------------CCC-c-------------------------
Q 001975 351 PKD-----------------------------------------------NPS-E------------------------- 357 (987)
Q Consensus 351 pk~-----------------------------------------------~~~-~------------------------- 357 (987)
... ++. .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 100 000 0
Q ss_pred --------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE----cCCCCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001975 358 --------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 358 --------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri----~~~skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
..+-...+||.||+..+..+.|++.|.-.|+|..|.+ ...++|++.|+|..+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0011247899999999999999999999999988654 3457899999999999999999999987777
Q ss_pred CcEEEEEec
Q 001975 426 GKQIKLEAS 434 (987)
Q Consensus 426 Gr~LkV~~A 434 (987)
.++..+...
T Consensus 283 ~~~~~~Rl~ 291 (608)
T KOG4212|consen 283 DRRMTVRLD 291 (608)
T ss_pred cccceeecc
Confidence 777777663
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=3.6e-15 Score=159.25 Aligned_cols=149 Identities=18% Similarity=0.326 Sum_probs=122.5
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001975 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeeid 227 (987)
.+|||+||+. .+..+|... | +.+|.+|-++ +.|.||||+ -++.++++ +
T Consensus 3 ~KLFIGNLp~~~~~~elr~l--------------F--------e~ygkVlECD------IvKNYgFVH-iEdktaae--d 51 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSL--------------F--------EQYGKVLECD------IVKNYGFVH-IEDKTAAE--D 51 (346)
T ss_pred cchhccCCCcccchHHHHHH--------------H--------HhhCceEeee------eecccceEE-eecccccH--H
Confidence 4799999987 777676665 7 6778776543 267899999 45666667 8
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001975 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
+|..++|..|+ ...+.|...++ +...+++|+|+||.+.++.+||++.|++||+|.++
T Consensus 52 airNLhgYtLh-g~nInVeaSks----------------------Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviec 108 (346)
T KOG0109|consen 52 AIRNLHGYTLH-GVNINVEASKS----------------------KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIEC 108 (346)
T ss_pred HHhhcccceec-ceEEEEEeccc----------------------cCCCccccccCCCCccccCHHHhhhhcccCCceee
Confidence 99999999998 44444433222 23567999999999999999999999999999999
Q ss_pred EecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001975 308 YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 308 kitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~ 354 (987)
++ -++|+||.|.-.++|..|++.|++.+|.|+++.|+.+...-.
T Consensus 109 di---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 109 DI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred ee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 98 688999999999999999999999999999999998865543
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=1.5e-12 Score=144.97 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=67.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A 434 (987)
.++|+|+|||.++|++.|++-|..||.|..+.|+.+.+..+.|.|.++++|++|+..|||..+.|+.|+|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3689999999999999999999999999999987666666799999999999999999999999999999874
No 46
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=5.6e-14 Score=147.67 Aligned_cols=150 Identities=23% Similarity=0.400 Sum_probs=130.4
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC---
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN--- 354 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~--- 354 (987)
..|||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|..|+..++++.|.|..+.|.++.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999999987 568999999999999999999999999999999988874211
Q ss_pred ---C----------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC
Q 001975 355 ---P----------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 355 ---~----------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG 421 (987)
. .........|.|.|+...+.+.+|.+.|.++|.+..... ..+++||+|.+.++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 0 011234457899999999999999999999999965544 578999999999999999999999
Q ss_pred CeeCCcEEEEEe
Q 001975 422 SDVAGKQIKLEA 433 (987)
Q Consensus 422 ~~I~Gr~LkV~~ 433 (987)
..+.|+.|.+..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999933
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.43 E-value=2e-12 Score=141.32 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=135.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE--------Ee----cccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI--------YT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV--------ki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~ 340 (987)
.....+.|||.|||.++|.+++.++|++||-|..- ++ .|+.+|=|.+.|-..+++..|++.|++..|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44556789999999999999999999999987642 22 5888999999999999999999999999999
Q ss_pred cccccccccCCCC----------C------------------------CCcccccccceeeecCCC----CCC-------
Q 001975 341 RRKLDIHYSIPKD----------N------------------------PSEKDANQGTLVVFNLDS----SVS------- 375 (987)
Q Consensus 341 Gr~L~V~~a~pk~----------~------------------------~~~~~~~~~tLfV~NLp~----svT------- 375 (987)
|++|+|+.|+-.. . ...+....++|.++|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999997653110 0 011223456899999831 222
Q ss_pred HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 376 TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 376 eedLrelFs~fG~I~sVri~-~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
+++|++.+++||.|..|.|. ....|.+-|.|.+.++|..||+.|+|++|+||+|..+...-+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 57888899999999998886 4578999999999999999999999999999999998876544
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.40 E-value=1.1e-12 Score=131.19 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=74.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
.....++|||+|||+++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999875 57789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 001975 348 YSIPKDN 354 (987)
Q Consensus 348 ~a~pk~~ 354 (987)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9876544
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.39 E-value=1.3e-12 Score=130.79 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=72.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (987)
..++|||.|||..+++++|+++|++||.|++|+++. .+++||||+|.+.++|++|++.||+..|+|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 456899999999999999999999999999998864 358999999999999999999999999999999999998
Q ss_pred CCc
Q 001975 436 PGG 438 (987)
Q Consensus 436 pk~ 438 (987)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=9.8e-13 Score=133.12 Aligned_cols=164 Identities=18% Similarity=0.270 Sum_probs=123.5
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhh
Q 001975 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDL 223 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILp--dedDL~sG~SkGfGFV~f~~t~eaa 223 (987)
+-..||++||+. ++..-||+. | -..|-++. -..|..+...+||||++| .++|++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL--------------~--------iqagpVv~i~iPkDrv~~~~qGygF~Ef-~~eeda 64 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYEL--------------F--------IQAGPVVNLHIPKDRVTQKHQGYGFAEF-RTEEDA 64 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHH--------------H--------HhcCceeeeecchhhhcccccceeEEEE-echhhh
Confidence 446799999986 776677766 5 33343333 112333556899999994 588888
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001975 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
+ .|+.-+|+..|. ++.+.|.++- .....-....+|||+||.+.++|..|.+.|+.||.
T Consensus 65 d--YAikiln~VkLY-grpIrv~kas-------------------~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 65 D--YAIKILNMVKLY-GRPIRVNKAS-------------------AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred H--HHHHHHHHHHhc-CceeEEEecc-------------------cccccccccccccccccCcchhHHHHHHHHHhccc
Confidence 8 899999988898 4444332211 01112223489999999999999999999999998
Q ss_pred EEEE------EecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001975 304 IRTI------YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (987)
Q Consensus 304 I~sV------kitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~ 355 (987)
|... ..++..+|||||.|.+.+.+.+|+..++|+.+..+++.|.|+..+...
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 7763 136899999999999999999999999999999999999999776554
No 51
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.31 E-value=9.4e-12 Score=129.18 Aligned_cols=149 Identities=23% Similarity=0.326 Sum_probs=116.4
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEE--Eecccc----cceEEEEeCCHHHHHHHHHHccCcccc---cccccc
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTI--YTACKH----RGFVMISYYDIRAARNAMKALQNKPLR---RRKLDI 346 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sV--kitgks----rGfAFVeF~d~e~A~kAl~~Lng~~l~---Gr~L~V 346 (987)
.-|||||.+||.++...||..+|..|--.+.. +.+.+. +-+|||+|.+...|..|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46999999999999999999999999766655 444443 379999999999999999999999875 455666
Q ss_pred cccCCCCCC---------------------------------------------------Cccc----------------
Q 001975 347 HYSIPKDNP---------------------------------------------------SEKD---------------- 359 (987)
Q Consensus 347 ~~a~pk~~~---------------------------------------------------~~~~---------------- 359 (987)
++++..... .+.+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 554321100 0000
Q ss_pred ---------------ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHhCCCe
Q 001975 360 ---------------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 360 ---------------~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
....||||-||.++++|++|+++|+.|-....+++-.+ ....|||+|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 01138999999999999999999999987777766433 33479999999999999999999987
Q ss_pred e
Q 001975 424 V 424 (987)
Q Consensus 424 I 424 (987)
|
T Consensus 273 ~ 273 (284)
T KOG1457|consen 273 L 273 (284)
T ss_pred e
Confidence 6
No 52
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.6e-11 Score=142.45 Aligned_cols=165 Identities=17% Similarity=0.329 Sum_probs=132.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
.......+||++||..+++++++++...||++..... ++.++||||.+|.+......|+..|||..+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3345688999999999999999999999999987653 57899999999999999999999999999999999998
Q ss_pred ccCCCCCCCc--------------------ccccccceeeecC--CCCC-C-------HHHHHHHhhccCCEEEEEEcCC
Q 001975 348 YSIPKDNPSE--------------------KDANQGTLVVFNL--DSSV-S-------TEELHQIFGIYGEIREIRDTQH 397 (987)
Q Consensus 348 ~a~pk~~~~~--------------------~~~~~~tLfV~NL--p~sv-T-------eedLrelFs~fG~I~sVri~~~ 397 (987)
.+.+...... ...+...|.+.|+ +.++ + -|+++..|.+||.|..|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 8765432211 1123345555554 1111 1 1556777889999999988654
Q ss_pred --------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 398 --------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 398 --------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
.-|..||+|.+.+++++|+++|+|.+|+|++|...|....
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3567899999999999999999999999999999998653
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=6.4e-12 Score=107.66 Aligned_cols=66 Identities=35% Similarity=0.563 Sum_probs=62.1
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001975 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 365 LfV~NLp~svTeedLrelFs~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
|||+|||.++++++|+++|++||.|..+.+..+ .+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988763 578999999999999999999999999999986
No 54
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.28 E-value=6.3e-11 Score=131.73 Aligned_cols=163 Identities=25% Similarity=0.410 Sum_probs=132.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccc-eEEEEeCCHHHHHHHHHHccCccccc--cccccccc---
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYS--- 349 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrG-fAFVeF~d~e~A~kAl~~Lng~~l~G--r~L~V~~a--- 349 (987)
+--.++|.|+-.-|+-+-|..+|++||.|..|..-.|..+ .|.|.|.|.+.|+.|...|+|+.|.. +.|+|.|+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 4457789999999999999999999999998876445555 59999999999999999999987753 45555443
Q ss_pred -------CCCCCC--------C---------------------------------------ccccc--ccceeeecCC-C
Q 001975 350 -------IPKDNP--------S---------------------------------------EKDAN--QGTLVVFNLD-S 372 (987)
Q Consensus 350 -------~pk~~~--------~---------------------------------------~~~~~--~~tLfV~NLp-~ 372 (987)
..|... . ..... ...|.|.||. .
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 211110 0 00001 3568888885 5
Q ss_pred CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 373 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 373 svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
.+|.+.|..+|+.||+|.+|+|..+++..|.|+|.|...|+-|+..|+|..+.||+|+|.+++-..
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 789999999999999999999999888999999999999999999999999999999999997543
No 55
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.26 E-value=4.4e-11 Score=132.93 Aligned_cols=160 Identities=23% Similarity=0.303 Sum_probs=136.6
Q ss_pred CcEEEEccCCCC-CChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001975 277 SRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (987)
Q Consensus 277 srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~ 355 (987)
+..|.|.||..+ ||.+.|..+|..||+|..|++-.+.+.-|.|.|.|...|+-|++.|+|..+.|++|+|.+++...-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 588999999765 8999999999999999999986666789999999999999999999999999999999887532110
Q ss_pred ------Cc-------------------------ccccccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcCCCCcEEE
Q 001975 356 ------SE-------------------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKF 403 (987)
Q Consensus 356 ------~~-------------------------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I-~sVri~~~skG~aF 403 (987)
.. .-.+..+|.+.|+|.++++|+|+++|..-|.. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 00 01244589999999999999999999998876 55566676788999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCC-cEEEEEeccC
Q 001975 404 IEFYDIRAAETALRTLNRSDVAG-KQIKLEASRP 436 (987)
Q Consensus 404 VeF~d~edA~kAL~~LNG~~I~G-r~LkV~~A~p 436 (987)
+.+.++|+|..|+-.++...+++ ..|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999875 4999999875
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.26 E-value=9.7e-12 Score=106.53 Aligned_cols=66 Identities=30% Similarity=0.616 Sum_probs=61.7
Q ss_pred EEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001975 280 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 280 LfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~ 345 (987)
|||+|||.++|+++|+++|++||.|..+++ .+..++||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999998876 356899999999999999999999999999999874
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.25 E-value=7.9e-12 Score=138.74 Aligned_cols=203 Identities=16% Similarity=0.248 Sum_probs=131.0
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001975 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaee 225 (987)
...+||+++|+| ++.+.|.+. |..+.|+...++ ..|..+++++|||||+|.+ .+.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~y--------------f~~~Gev~d~~v------m~d~~t~rsrgFgfv~f~~-~~~v~- 62 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREY--------------FSQFGEVTDCVV------MRDPSTGRSRGFGFVTFAT-PEGVD- 62 (311)
T ss_pred CCcceeecCcCccccHHHHHHH--------------hcccCceeeEEE------eccCCCCCcccccceecCC-Ccchh-
Confidence 567899999999 888888888 755544433332 2555679999999999663 33333
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEE
Q 001975 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (987)
Q Consensus 226 idAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 305 (987)
++...--..|+ .+.+.+.+..+ +.............+|||++||.++++++|++.|++||.|.
T Consensus 63 --~vl~~~~h~~d-gr~ve~k~av~--------------r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~ 125 (311)
T KOG4205|consen 63 --AVLNARTHKLD-GRSVEPKRAVS--------------REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA 125 (311)
T ss_pred --eeecccccccC-CccccceeccC--------------cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeE
Confidence 22111111232 11111111111 11111122233678999999999999999999999999888
Q ss_pred EEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccc-cceeeecCCCCCCHHHH
Q 001975 306 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQ-GTLVVFNLDSSVSTEEL 379 (987)
Q Consensus 306 sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~-~tLfV~NLp~svTeedL 379 (987)
.+.+ +.+.+||+||.|.+.+++++++. .....|.++.+.|..|.|+.......... ......|+....+.-.|
T Consensus 126 ~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l 204 (311)
T KOG4205|consen 126 DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFL 204 (311)
T ss_pred eeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccccccccccccccccccccccccc
Confidence 7743 67899999999999999999994 78889999999999999987653322111 12222244444444445
Q ss_pred HHHhhccCCE
Q 001975 380 HQIFGIYGEI 389 (987)
Q Consensus 380 relFs~fG~I 389 (987)
...|.-|+.+
T Consensus 205 ~~~~~g~~~~ 214 (311)
T KOG4205|consen 205 KKYFKGYGPV 214 (311)
T ss_pred chhccccCcc
Confidence 5555555544
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=3.7e-11 Score=125.42 Aligned_cols=120 Identities=28% Similarity=0.451 Sum_probs=103.0
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
.++|||+|||.++|+++|+++|.+||.|..+.+ +++.+|||||+|.+.++|..|++.+++..|.|++|.|.+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 799999999999999999999999999988754 578999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC
Q 001975 352 ----KDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ 396 (987)
Q Consensus 352 ----k~~~~----------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~ 396 (987)
+.... ........+++.+++..++..++...|..+|.+..+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 22221 0112345899999999999999999999999997776654
No 59
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.22 E-value=5.6e-11 Score=135.10 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=127.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEE---EecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTI---YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sV---kitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk 352 (987)
...-|-+++||+++|++||.++|+.++ |+.+ +.+++..|-|||+|.+.+++++|++ .+...+..+-|.|--+.++
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 346788999999999999999999997 4444 3468999999999999999999996 7888888888888665444
Q ss_pred CCC-------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEE-EEEcC----CCCcEEEEEECCHHHHHHHHHHhC
Q 001975 353 DNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDTQ----HKHNHKFIEFYDIRAAETALRTLN 420 (987)
Q Consensus 353 ~~~-------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~s-Vri~~----~skG~aFVeF~d~edA~kAL~~LN 420 (987)
+.. .....+...|.+++||..||++||.++|+---.|.. |.++. +..|-|||+|++.+.|++|+. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 321 111135568999999999999999999997544433 33332 245679999999999999999 67
Q ss_pred CCeeCCcEEEEEeccCCchhh
Q 001975 421 RSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 421 G~~I~Gr~LkV~~A~pk~~Rr 441 (987)
...|+-+-|.|-.+...+.++
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HHhhccceEEeehhHHHHHHh
Confidence 788888999887776555443
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.9e-11 Score=122.00 Aligned_cols=77 Identities=32% Similarity=0.496 Sum_probs=73.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
.+.|||.||+..+++.||..+|..||.|..|.|..+..|||||||+++.+|+.|+..|+|+.|.|..|+|+++.-+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 56899999999999999999999999999999988889999999999999999999999999999999999987543
No 61
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.1e-11 Score=121.77 Aligned_cols=79 Identities=23% Similarity=0.488 Sum_probs=74.1
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~ 354 (987)
-.++|||+||+..+++.||..+|..||+|.+|.+.....|||||+|++..+|+.|+..|+|+.|.|..|.|+.+.-...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3689999999999999999999999999999999889999999999999999999999999999999999998865443
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=127.11 Aligned_cols=100 Identities=15% Similarity=0.241 Sum_probs=81.8
Q ss_pred cCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC---CCCcEEEEEECCHHH
Q 001975 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRA 411 (987)
Q Consensus 335 ng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~---~skG~aFVeF~d~ed 411 (987)
++-...|..+.++.+... ......+.|+|.|||...-+-||+.+|++||+|.+|.|+- .+||||||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~s----~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNS----SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCcC----CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 444555665555433221 2223446899999999999999999999999999998863 479999999999999
Q ss_pred HHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 412 AETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 412 A~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
|++|-++|||..|.||+|.|..+..+-
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchhh
Confidence 999999999999999999999998764
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.12 E-value=1.7e-10 Score=124.54 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=69.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~--skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
.++|||+||++.+++++|+++|+.||+|++|++..+ .+|||||+|.+.++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999999765 47999999999999999996 999999999999999874
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.10 E-value=2.5e-10 Score=98.95 Aligned_cols=66 Identities=26% Similarity=0.538 Sum_probs=59.8
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001975 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 365 LfV~NLp~svTeedLrelFs~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
|||+|||+++++++|+++|+.||.|..+++..+ .+++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999998765 368999999999999999999999999999985
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.10 E-value=4.1e-10 Score=94.87 Aligned_cols=69 Identities=30% Similarity=0.571 Sum_probs=64.2
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC---CcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001975 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 364 tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~s---kG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+|+|.|||..+++++|+++|++||.|..+++..+. +++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999887654 6899999999999999999999999999999873
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.5e-10 Score=124.31 Aligned_cols=83 Identities=22% Similarity=0.403 Sum_probs=74.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
.....++|+|.|||...-|-||+.+|++||+|.+|.| ..-+|||+||+|++.++|++|.++|+|..+.||+|.|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 4445689999999999999999999999999999865 5668999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 001975 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
......
T Consensus 172 TarV~n 177 (376)
T KOG0125|consen 172 TARVHN 177 (376)
T ss_pred chhhcc
Confidence 766443
No 67
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.07 E-value=1.3e-09 Score=120.22 Aligned_cols=169 Identities=20% Similarity=0.321 Sum_probs=135.5
Q ss_pred CCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHc--cCccccccccccc
Q 001975 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL--QNKPLRRRKLDIH 347 (987)
Q Consensus 270 ~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~L--ng~~l~Gr~L~V~ 347 (987)
.+....++-.|.|++|-..++|.+|.+..+.||.|..+.. ...+..|.|+|+|.+.|+.++..- +...+.|+.--+.
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 3455667889999999999999999999999999998876 567779999999999999998532 3355778887888
Q ss_pred ccCCCCCCC---cccccccceee--ecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC
Q 001975 348 YSIPKDNPS---EKDANQGTLVV--FNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 348 ~a~pk~~~~---~~~~~~~tLfV--~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
|+..+.... +.......|.+ -|--..+|-+.|+.++...|+|.+|.|+.+..=.|.|||++.+.|++|..+|||.
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccc
Confidence 875443221 11122334443 4445688999999999999999999999875557999999999999999999999
Q ss_pred ee--CCcEEEEEeccCCch
Q 001975 423 DV--AGKQIKLEASRPGGA 439 (987)
Q Consensus 423 ~I--~Gr~LkV~~A~pk~~ 439 (987)
.| +-.+|+|+||+|..-
T Consensus 183 DIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 183 DIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccceeEEEEecCccee
Confidence 87 458999999999653
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=3.2e-10 Score=105.79 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=74.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
....++.|||+|||.++|.++..++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|.+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4556799999999999999999999999999999998 56689999999999999999999999999999999999887
Q ss_pred CCC
Q 001975 351 PKD 353 (987)
Q Consensus 351 pk~ 353 (987)
+.+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 654
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.06 E-value=3.9e-10 Score=97.76 Aligned_cols=66 Identities=23% Similarity=0.558 Sum_probs=58.5
Q ss_pred EEEccCCCCCChHHHHHhhcccCcEEEEEec----ccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001975 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 280 LfVgNLP~~vTEedLrelFs~fG~I~sVkit----gksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~ 345 (987)
|||+|||+++++++|+++|+.||.|..+++. +..+++|||+|.+.++|++|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999998762 34689999999999999999999998999999874
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.06 E-value=3.6e-10 Score=122.03 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=68.5
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk 352 (987)
.++|||+|||+.+|+++|+++|+.||+|.+|.+ .+..+|||||+|.+.++|+.|+. |+|..|.|+.|.|..+..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 589999999999999999999999999999987 33468999999999999999995 9999999999999987643
No 71
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=7.8e-10 Score=92.51 Aligned_cols=56 Identities=27% Similarity=0.569 Sum_probs=52.3
Q ss_pred HHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001975 379 LHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 379 LrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A 434 (987)
|+++|++||+|..|.+.++.+++|||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998876799999999999999999999999999999999986
No 72
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=1.6e-10 Score=133.18 Aligned_cols=161 Identities=24% Similarity=0.344 Sum_probs=130.6
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk 352 (987)
...+.++|+|-|||..|++++|+++|+.||+|+.|+.+...+|.+||+|+|..+|++|+++|++.++.|+.|+.......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999884322111
Q ss_pred CC------------------CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHH
Q 001975 353 DN------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414 (987)
Q Consensus 353 ~~------------------~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~k 414 (987)
.. ......+...+++- |++..+..-++.+|..+|.+.. +.++..+..-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 10 01112234456555 9999998888889999999988 8877767789999999999977
Q ss_pred HHHHhCCCeeCCcEEEEEeccC
Q 001975 415 ALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 415 AL~~LNG~~I~Gr~LkV~~A~p 436 (987)
+...+ |..+.++...++++.+
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccCC-ceecCCCCceEEecCC
Confidence 77644 6677777777777766
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=8.5e-10 Score=102.98 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=75.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~--~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
-.+.|||+|||.++|.|+..++|.+||.|..|++- +..+|.|||-|++..+|.+|++.|+|..+.++.|.|-+.++..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 35689999999999999999999999999999984 4568999999999999999999999999999999999999876
Q ss_pred hhhcc
Q 001975 439 ARRFM 443 (987)
Q Consensus 439 ~Rrl~ 443 (987)
..+.+
T Consensus 97 ~~~~~ 101 (124)
T KOG0114|consen 97 AFKLM 101 (124)
T ss_pred HHHHH
Confidence 55533
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.9e-10 Score=118.97 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=72.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (987)
...+|.|.||+.++++++|+++|.+||.|.+|.+.. .++|||||.|.+.++|++||+.|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456899999999999999999999999999998854 479999999999999999999999999999999999999
Q ss_pred CC
Q 001975 436 PG 437 (987)
Q Consensus 436 pk 437 (987)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=2.1e-10 Score=110.62 Aligned_cols=77 Identities=26% Similarity=0.471 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
...++||||+||...++|++|.++|+++|+|+.|.+ +...-|||||+|.+.++|..|++.++|..+..+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 456899999999999999999999999999999965 566789999999999999999999999999999999987
Q ss_pred cC
Q 001975 349 SI 350 (987)
Q Consensus 349 a~ 350 (987)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.00 E-value=7.9e-10 Score=124.95 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=75.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEECCH--HHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDI--RAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-skG~aFVeF~d~--edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
...+|||+||++.+++++|+.+|..||.|.+|.|++. .||||||+|.+. .++.+||..|||..+.|+.|+|..|++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 3468999999999999999999999999999998753 489999999987 7899999999999999999999999997
Q ss_pred chhhccch
Q 001975 438 GARRFMVQ 445 (987)
Q Consensus 438 ~~Rrl~qq 445 (987)
---|+.+.
T Consensus 89 YLeRLkrE 96 (759)
T PLN03213 89 YLARLKRE 96 (759)
T ss_pred HHHHHHHH
Confidence 75555543
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=6.7e-10 Score=117.22 Aligned_cols=78 Identities=23% Similarity=0.451 Sum_probs=74.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
....+|-|.||+.+++|++|+++|.+||.|..|++ +|.+||||||+|.+.++|.+||+.|||.-+..--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999999999999999999999999975 8999999999999999999999999999999999999999
Q ss_pred CCC
Q 001975 350 IPK 352 (987)
Q Consensus 350 ~pk 352 (987)
.|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 78
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=2.9e-09 Score=90.09 Aligned_cols=70 Identities=34% Similarity=0.609 Sum_probs=65.3
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC----CcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001975 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 364 tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~s----kG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
+|+|.|||..+++++|+++|+.||.|..+.+.... +++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999887654 78999999999999999999999999999999874
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=98.96 E-value=1.7e-09 Score=91.09 Aligned_cols=69 Identities=33% Similarity=0.605 Sum_probs=62.5
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEec---ccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVkit---gksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
+|||+|||..+++++|+++|++||+|..+++. +..+++|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999998763 3457999999999999999999999999999988763
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1e-09 Score=105.88 Aligned_cols=75 Identities=25% Similarity=0.397 Sum_probs=68.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (987)
.++||||+||...++||+|.++|+++|+|+.|.+- ....|||||+|.+.++|+.|++-++|..++.++|.|.|-.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 57899999999999999999999999999998542 2356899999999999999999999999999999999854
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=8.2e-10 Score=113.95 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001975 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~ 345 (987)
+.......+|.|-||..-++.++|+.+|++||.|-+|+| ++.++|||||.|.+..+|+.|+++|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344556789999999999999999999999999999986 788999999999999999999999999999999999
Q ss_pred ccccC
Q 001975 346 IHYSI 350 (987)
Q Consensus 346 V~~a~ 350 (987)
|+++.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99875
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.1e-09 Score=115.31 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=67.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
.+...++|||++|++.+..++|+++|++||+|++..+ ++++|||+||+|+|.++|.+|++ --+-.|+||+-.|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccc
Confidence 4455689999999999999999999999999998754 79999999999999999999996 34557899988887
Q ss_pred ccC
Q 001975 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 664
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.94 E-value=2.9e-09 Score=113.61 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=68.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~--skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
..+|||+||++.+|+++|+++|+.||+|.+|++..+ .+++|||+|+++++|+.|+. |+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 469999999999999999999999999999999865 45799999999999999996 999999999999998664
No 84
>smart00360 RRM RNA recognition motif.
Probab=98.93 E-value=3e-09 Score=89.10 Aligned_cols=66 Identities=33% Similarity=0.581 Sum_probs=60.4
Q ss_pred eecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001975 367 VFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 367 V~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
|.|||..+++++|+++|++||.|..+.+..+ .+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999988654 35899999999999999999999999999999874
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=98.93 E-value=1.5e-09 Score=122.71 Aligned_cols=120 Identities=13% Similarity=0.192 Sum_probs=87.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-cccccceEEEEeCCH--HHHHHHHHHccCcccccccccccccC
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDI--RAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgksrGfAFVeF~d~--e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
.....+|||+||++.+++++|+.+|..||.|..|.+ ..+.||||||+|.+. .++.+||..|||..+.|+.|+|..++
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 345689999999999999999999999999999976 222399999999987 78999999999999999999999887
Q ss_pred CCCCC------Cc-ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc
Q 001975 351 PKDNP------SE-KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395 (987)
Q Consensus 351 pk~~~------~~-~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~ 395 (987)
|.-.. .+ ......++.+.- .......|+-+|-+.++|+.+-+-
T Consensus 87 P~YLeRLkrEReea~s~~~~~~kl~k--~~~e~~qLnifFPrLrKvKslPfs 136 (759)
T PLN03213 87 EHYLARLKREWEAASSTSDNTIKAPS--DSPPATHLNIFFPRLRKVKAMPLS 136 (759)
T ss_pred HHHHHHHHHHHHHhhccccccccccc--cCCccceeeEeccccccccccccC
Confidence 64210 00 000111221111 113345677788888888766443
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.92 E-value=5.6e-09 Score=109.00 Aligned_cols=75 Identities=28% Similarity=0.568 Sum_probs=69.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
..+|||+|||.++++++|+++|.+||.|..|++.. ..+|||||+|.+.++|..|+..++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999998887753 4689999999999999999999999999999999999653
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.90 E-value=1.4e-09 Score=112.25 Aligned_cols=77 Identities=26% Similarity=0.495 Sum_probs=71.1
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
-.+|.|.||-..++.++|+.+|++||.|-+|.|.. +++|||||.|.+..+|+.|+++|+|..++|+.|.|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 45899999999999999999999999999998864 4799999999999999999999999999999999999875
Q ss_pred Cc
Q 001975 437 GG 438 (987)
Q Consensus 437 k~ 438 (987)
..
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.4e-09 Score=114.49 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=72.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE-----ecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-----itgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
...|-+||||.-|+.+++|++|+..|+.||+|+.|. ++++++|||||+|+++.+...|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 446889999999999999999999999999999985 389999999999999999999999999999999999998
Q ss_pred ccC
Q 001975 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 753
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.87 E-value=4.3e-09 Score=112.32 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
...+|||+||++.+|+++|+++|+.||+|.+|++ .++.++||||+|+++++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3589999999999999999999999999999987 4567789999999999999999 699999999999996543
No 90
>smart00360 RRM RNA recognition motif.
Probab=98.86 E-value=5.1e-09 Score=87.71 Aligned_cols=66 Identities=32% Similarity=0.598 Sum_probs=59.7
Q ss_pred EccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 282 VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 282 VgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
|+|||..+++++|+++|++||.|..+.+ +++.+|+|||+|.+.++|.+|++.+++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999998875 34568999999999999999999999999999988763
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-09 Score=112.43 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=76.1
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
....|+|||++|..+|||.-|...|-.||+|.+|++ +.++||||||+|...|+|..||..||+.+|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 345699999999999999999999999999999975 789999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001975 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.|..-.
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9887543
No 92
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=8.4e-09 Score=111.53 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=79.7
Q ss_pred ccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCC
Q 001975 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 348 ~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
...|..++.....+-+||||.-|+.+++|.+|+..|+.||.|+.|+++. +++|||||+|+++.+...|.+..+|.
T Consensus 87 ~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 87 LWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred hcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 3455555555556778999999999999999999999999999998764 58999999999999999999999999
Q ss_pred eeCCcEEEEEeccCCc
Q 001975 423 DVAGKQIKLEASRPGG 438 (987)
Q Consensus 423 ~I~Gr~LkV~~A~pk~ 438 (987)
.|+|+.|.|.+-+-+.
T Consensus 167 ~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 167 KIDGRRILVDVERGRT 182 (335)
T ss_pred eecCcEEEEEeccccc
Confidence 9999999999977544
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=4.6e-09 Score=106.81 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=70.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~--~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
..++|||.|||.++-+.+|.++|.+||.|..|.+-. ....||||+|+++.+|+.||..-+|..++|.+|+|++++-.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 567999999999999999999999999999987643 34579999999999999999999999999999999998764
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.82 E-value=1.1e-08 Score=86.67 Aligned_cols=70 Identities=33% Similarity=0.656 Sum_probs=63.4
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEecc----cccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVkitg----ksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
+|+|+|||..+++++|+++|+.||+|..+.+.. ..+++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987632 3489999999999999999999999999999988764
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.81 E-value=8.5e-08 Score=106.14 Aligned_cols=167 Identities=20% Similarity=0.324 Sum_probs=136.5
Q ss_pred CCCCCCCcEEEEccCCC--CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc--cccccc
Q 001975 271 PYGEHPSRTLFVRNINS--NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDI 346 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~--~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~--Gr~L~V 346 (987)
.....+...|.+.=|.+ .+|.+-|..+....|+|..|.+-.+.--.|+|+|++.+.|++|...|||..|. -..|+|
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 33455667777776654 58999999999999999999886666668999999999999999999998774 367888
Q ss_pred cccCCCCCC--------------------------------------------------------------C--------
Q 001975 347 HYSIPKDNP--------------------------------------------------------------S-------- 356 (987)
Q Consensus 347 ~~a~pk~~~--------------------------------------------------------------~-------- 356 (987)
+|++|..-. +
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 887764210 0
Q ss_pred --------cccccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001975 357 --------EKDANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 357 --------~~~~~~~tLfV~NLp~-svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
........+.|.+|+. .+.-+.|..+|..||.|.+|++++.+.|.|.|++.|..+.++|+..||+..+-|.
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 0001224688899986 4567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001975 428 QIKLEASRPG 437 (987)
Q Consensus 428 ~LkV~~A~pk 437 (987)
+|.|.+++..
T Consensus 354 kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 KLNVCVSKQN 363 (494)
T ss_pred eEEEeecccc
Confidence 9999988753
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.78 E-value=1e-08 Score=85.74 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=50.7
Q ss_pred HHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 294 LKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 294 LrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999985555799999999999999999999999999999999875
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.3e-09 Score=109.40 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=74.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (987)
..++|||++|...+++.-|...|-+||.|+.|.++- +.+|||||+|.-.|+|.+||..||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 457999999999999999999999999999998864 368999999999999999999999999999999999999
Q ss_pred CCchhh
Q 001975 436 PGGARR 441 (987)
Q Consensus 436 pk~~Rr 441 (987)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976544
No 98
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=9.5e-09 Score=108.32 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=68.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001975 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
+..-++|||++|++.+..|+|++.|++||+|++..|+ +++||||||+|.|.++|.+|++. -+-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 4456789999999999999999999999999997765 45899999999999999999983 34578999999999
Q ss_pred ccCCc
Q 001975 434 SRPGG 438 (987)
Q Consensus 434 A~pk~ 438 (987)
|.-..
T Consensus 88 A~lg~ 92 (247)
T KOG0149|consen 88 ASLGG 92 (247)
T ss_pred hhhcC
Confidence 87744
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.2e-08 Score=99.43 Aligned_cols=82 Identities=20% Similarity=0.408 Sum_probs=73.4
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 001975 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (987)
Q Consensus 357 ~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV 431 (987)
++......|||.++.+..++++|.+.|..||+|+.|.+.-+ .+|||+|+|++.++|++|+.+|||..+-|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34455678999999999999999999999999999987533 5789999999999999999999999999999999
Q ss_pred EeccCCc
Q 001975 432 EASRPGG 438 (987)
Q Consensus 432 ~~A~pk~ 438 (987)
.|+--+.
T Consensus 147 Dw~Fv~g 153 (170)
T KOG0130|consen 147 DWCFVKG 153 (170)
T ss_pred EEEEecC
Confidence 9986554
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.71 E-value=1.7e-08 Score=116.87 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=72.9
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk 352 (987)
+.|||+|||.+++|++|.++|+..|.|.++++ +|+.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999975 7999999999999999999999999999999999999998655
Q ss_pred CC
Q 001975 353 DN 354 (987)
Q Consensus 353 ~~ 354 (987)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=2.7e-09 Score=108.36 Aligned_cols=75 Identities=20% Similarity=0.420 Sum_probs=70.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
..+.-|||+|||.+.||.||.-.|++||+|+.|.+ ||+++||||+.|+|.++..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45688999999999999999999999999999964 8999999999999999999999999999999999999643
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=2.5e-08 Score=97.19 Aligned_cols=82 Identities=17% Similarity=0.430 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
......-.|||.++-..+||++|.+.|..||+|+.+.+ ++-.+|||+|+|++.+.|++|+..+||..|.|.+|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34445678999999999999999999999999999965 6889999999999999999999999999999999999
Q ss_pred cccCCCC
Q 001975 347 HYSIPKD 353 (987)
Q Consensus 347 ~~a~pk~ 353 (987)
.|+.-+.
T Consensus 147 Dw~Fv~g 153 (170)
T KOG0130|consen 147 DWCFVKG 153 (170)
T ss_pred EEEEecC
Confidence 9986554
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.65 E-value=6e-08 Score=112.43 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=73.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
..+||+|+|+++++++|..+|+..|.|.+++++- ..+||||++|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999998863 46899999999999999999999999999999999999877
Q ss_pred chhh
Q 001975 438 GARR 441 (987)
Q Consensus 438 ~~Rr 441 (987)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6554
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=98.64 E-value=8e-08 Score=84.42 Aligned_cols=57 Identities=28% Similarity=0.477 Sum_probs=49.7
Q ss_pred HHHHHHHhh----ccCCEEEEE-E-c------CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001975 376 TEELHQIFG----IYGEIREIR-D-T------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 376 eedLrelFs----~fG~I~sVr-i-~------~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||+.+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 2 2 3468999999999999999999999999999999873
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=5.6e-08 Score=113.43 Aligned_cols=165 Identities=18% Similarity=0.339 Sum_probs=135.3
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhccc-----------C-cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQF-----------G-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~f-----------G-~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~ 340 (987)
.....+.+||+++|..++++..-.+|..- | .+..+++ ...+.|||++|.+.++|..|+ .+++..+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhh-cccchhhC
Confidence 34456899999999999999999998754 3 3777777 678899999999999999999 58999999
Q ss_pred cccccccccCCCCC-------------------CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----C
Q 001975 341 RRKLDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----Q 396 (987)
Q Consensus 341 Gr~L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~-----~ 396 (987)
|+.+.+..-..... ..........++|.+||..+++++++++...||.++..++. +
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 98887733211110 11112244689999999999999999999999999886654 3
Q ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001975 397 HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 397 ~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~ 439 (987)
.++||||.+|.+..-...|+..|||..+++++|.|..|.....
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 5789999999999999999999999999999999999987653
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.8e-07 Score=106.21 Aligned_cols=142 Identities=19% Similarity=0.321 Sum_probs=107.3
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE---e----cccccc---eEEEEeCCHHHHHHHHHHccCcccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY---T----ACKHRG---FVMISYYDIRAARNAMKALQNKPLRRR 342 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk---i----tgksrG---fAFVeF~d~e~A~kAl~~Lng~~l~Gr 342 (987)
...-+++|||++||++++|++|...|..||.+..=. . -...+| |+|+.|+++..++.-+.+..- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 344579999999999999999999999999875321 1 122556 999999999998887765432 222
Q ss_pred cccccccCCCCC-------------------CCcccccccceeeecCCCCCCHHHHHHHhh-ccCCEEEEEEcCC-----
Q 001975 343 KLDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFG-IYGEIREIRDTQH----- 397 (987)
Q Consensus 343 ~L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~svTeedLrelFs-~fG~I~sVri~~~----- 397 (987)
++.++.+.+... ....-.+.+||||++||--++.++|..+|+ -||.|..+-|..+
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 222222222111 112234568999999999999999999999 6999999888655
Q ss_pred CCcEEEEEECCHHHHHHHHH
Q 001975 398 KHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 398 skG~aFVeF~d~edA~kAL~ 417 (987)
.+|-|-|+|.+..+-.+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 57889999999999999998
No 107
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=3.5e-08 Score=118.88 Aligned_cols=159 Identities=19% Similarity=0.337 Sum_probs=139.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec----ccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit----gksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
....+++||++||+..+++.+|+..|..+|.|..|.+. +....||||.|.+...+-.|..++.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45567999999999999999999999999999999772 33445999999999999999999999999888888887
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCC--
Q 001975 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-- 426 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~G-- 426 (987)
..++ ....+.++|++|...+....|...|..||.|..|.+- +..-|+||.|++...|+.|+..|-|..|+|
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 7663 3346789999999999999999999999999998753 346699999999999999999999999986
Q ss_pred cEEEEEeccCCc
Q 001975 427 KQIKLEASRPGG 438 (987)
Q Consensus 427 r~LkV~~A~pk~ 438 (987)
++|.|.++.+-.
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 789999998755
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.57 E-value=7.3e-08 Score=114.55 Aligned_cols=77 Identities=32% Similarity=0.547 Sum_probs=72.7
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~ 354 (987)
+|||||+.|+.+++|.||..+|+.||+|.+|.+ ...+|||||......+|.+|+.+|.+..+.++.|+|.|+..+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 589999999999999999999999999999998 67899999999999999999999999999999999999976543
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.56 E-value=1.2e-07 Score=99.68 Aligned_cols=76 Identities=28% Similarity=0.521 Sum_probs=70.9
Q ss_pred cceeeecCCCCCCHHHHHH----HhhccCCEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 363 GTLVVFNLDSSVSTEELHQ----IFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLre----lFs~fG~I~sVri~--~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
.||||.||.+.+..++|+. +|++||+|.+|... ++-+|.|||.|++.+.|..|++.|+|..+-|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 4999999999999999988 99999999998875 45689999999999999999999999999999999999998
Q ss_pred Cc
Q 001975 437 GG 438 (987)
Q Consensus 437 k~ 438 (987)
+.
T Consensus 90 ~s 91 (221)
T KOG4206|consen 90 DS 91 (221)
T ss_pred cc
Confidence 66
No 110
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=1.2e-08 Score=103.81 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=70.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001975 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A 434 (987)
..+.-|||+|||..+|+.||.-+|++||+|..|.+++ .++||||++|+|.++..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3456899999999999999999999999999998865 47899999999999999999999999999999999875
Q ss_pred cC
Q 001975 435 RP 436 (987)
Q Consensus 435 ~p 436 (987)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.52 E-value=1.8e-07 Score=111.33 Aligned_cols=81 Identities=28% Similarity=0.373 Sum_probs=76.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001975 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 360 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~~ 439 (987)
..++||||+.|+..+++.||..+|+.||+|.+|.+.. .+++|||++....+|.+|+.+|++..+.++.|+|.|+..++.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 3568999999999999999999999999999998875 489999999999999999999999999999999999999887
Q ss_pred hh
Q 001975 440 RR 441 (987)
Q Consensus 440 Rr 441 (987)
|.
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 65
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=1.7e-07 Score=100.08 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=75.5
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
..+.++|||-.||.+..+.||..+|-.||.|.+.++ +..+|+|+||.|.++.+|+.||..|||..|+-++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 345799999999999999999999999999998865 788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001975 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
.+||+.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 988864
No 113
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=4.3e-08 Score=102.21 Aligned_cols=134 Identities=22% Similarity=0.289 Sum_probs=105.8
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
....+||||.|+-..|+|+-|.++|-+.|+|..|.+ .++.+ ||||.|.++-...-|+..+||..+.++.+.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345699999999999999999999999999999987 34445 9999999999999999999999999999888754
Q ss_pred CCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCC
Q 001975 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 350 ~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL~~LNG 421 (987)
.-.... -|+..++++.+.+.|+.-|.|..+++... .+.++|+.+.-.-+.-.|+....+
T Consensus 85 ~G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 85 CGNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred cCCCcc-------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 322111 16678899999999999999998887543 455777776655555555554333
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.46 E-value=2.6e-07 Score=81.20 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=50.3
Q ss_pred hHHHHHhhc----ccCcEEEEE---e---c--ccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 291 DSELKALFE----QFGDIRTIY---T---A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 291 EedLrelFs----~fG~I~sVk---i---t--gksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999884 2 2 678999999999999999999999999999999876
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=3.3e-07 Score=101.24 Aligned_cols=79 Identities=30% Similarity=0.435 Sum_probs=70.5
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh-CCCeeCCcEEEEEecc
Q 001975 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIKLEASR 435 (987)
Q Consensus 357 ~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~L-NG~~I~Gr~LkV~~A~ 435 (987)
..+....+|||++|-..+++.+|+++|.+||+|++|++... +++|||+|.+.++|++|.+++ |...|+|++|+|.|+.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34566789999999999999999999999999999998875 679999999999999988765 5557899999999999
Q ss_pred C
Q 001975 436 P 436 (987)
Q Consensus 436 p 436 (987)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.42 E-value=1.5e-06 Score=96.67 Aligned_cols=164 Identities=10% Similarity=0.139 Sum_probs=118.4
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCc-------EEEEE-ecccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD-------IRTIY-TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~-------I~sVk-itgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~ 345 (987)
....-.|-+++||.++++.++.++|..--. |.-|+ .+++..|=|||.|..+++|+.|+. -+...++.|-|.
T Consensus 158 k~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIE 236 (508)
T KOG1365|consen 158 KENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIE 236 (508)
T ss_pred cccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHH
Confidence 344567888999999999999999973222 22333 278889999999999999999996 455555544444
Q ss_pred ccccC--------------CCC--------C-----CCcccccccceeeecCCCCCCHHHHHHHhhccCCE-EE--EEEc
Q 001975 346 IHYSI--------------PKD--------N-----PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI-RE--IRDT 395 (987)
Q Consensus 346 V~~a~--------------pk~--------~-----~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I-~s--Vri~ 395 (987)
+-.+. +-. . .........+|.+++||...+.|+|..+|..|-.- .- |+++
T Consensus 237 lFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 237 LFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 42110 000 0 00112235689999999999999999999998753 22 4443
Q ss_pred ----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 396 ----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 396 ----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
++..|-|||+|.+.|+|..|....+++..+.|-|.|-.+.-.+
T Consensus 317 ~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 317 LNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred EcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 2356789999999999999999999988888888887765443
No 117
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=2.4e-07 Score=98.08 Aligned_cols=161 Identities=20% Similarity=0.338 Sum_probs=109.8
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001975 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~~~~~~~~~eeE~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~eaaeeid 227 (987)
..+|+++|.+ ...+.|... | +-+|.|.-. + ..-|||||+ +++.-+++ |
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~--------------f--------~~yg~~~d~--~----mk~gf~fv~-fed~rda~--D 50 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERF--------------F--------KGYGKIPDA--D----MKNGFGFVE-FEDPRDAD--D 50 (216)
T ss_pred CceeecccCCccchhHHHHH--------------H--------hhccccccc--e----eecccceec-cCchhhhh--c
Confidence 4578888887 444344433 6 555533331 1 145699998 55777777 7
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCC-CCCCCCC----cCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccC
Q 001975 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSN-QGVSAGS----VVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG 302 (987)
Q Consensus 228 Ai~s~nG~eLegd~~v~vg~~ls~l~k~~~n-~~~~~a~----~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG 302 (987)
|+...+|.+|.+.. +.+.- ...... .+..-+. ............+.+.|.+++..+.+.+|.+.|.++|
T Consensus 51 av~~l~~~~l~~e~-~vve~-----~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g 124 (216)
T KOG0106|consen 51 AVHDLDGKELCGER-LVVEH-----ARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG 124 (216)
T ss_pred ccchhcCceeccee-eeeec-----ccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC
Confidence 99999999998554 22211 111000 0000000 0111122345568899999999999999999999999
Q ss_pred cEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 303 DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 303 ~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
.+..... .++++||+|...++|.+|+..|++..+.++.|.+.+.
T Consensus 125 ~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 125 EVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred CCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 9954444 7889999999999999999999999999999999443
No 118
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.38 E-value=3.4e-06 Score=96.96 Aligned_cols=206 Identities=10% Similarity=0.118 Sum_probs=124.9
Q ss_pred ccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEcc
Q 001975 205 SGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRN 284 (987)
Q Consensus 205 sG~SkGfGFV~f~~t~eaaeeidAi~s~nG~eLegd~~v~vg~~ls~l~k~~~n~~~~~a~~~ge~~~~e~~srtLfVgN 284 (987)
+|+..|=+||+|. ++|+++ +|+++- -+.+ +.+-+-|-....+-.+. . .+...+........|-+++
T Consensus 45 ~Gr~sGeA~Ve~~-seedv~--~Alkkd-R~~m-g~RYIEVf~~~~~e~d~--------~-~~~~g~~s~~~d~vVRLRG 110 (510)
T KOG4211|consen 45 NGRPSGEAYVEFT-SEEDVE--KALKKD-RESM-GHRYIEVFTAGGAEADW--------V-MRPGGPNSSANDGVVRLRG 110 (510)
T ss_pred CCCcCcceEEEee-chHHHH--HHHHhh-HHHh-CCceEEEEccCCccccc--------c-ccCCCCCCCCCCceEEecC
Confidence 5888899999965 666667 566531 1122 13222221211111111 0 0001111224568899999
Q ss_pred CCCCCChHHHHHhhcccCcEEE-EE----ecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc----------
Q 001975 285 INSNVEDSELKALFEQFGDIRT-IY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS---------- 349 (987)
Q Consensus 285 LP~~vTEedLrelFs~fG~I~s-Vk----itgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a---------- 349 (987)
||+.||++||.++|+-.-.|.. +. -.++..|-|||+|++.+.|++|+. -+...|..|-|.|-.+
T Consensus 111 LPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~ 189 (510)
T KOG4211|consen 111 LPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAAG 189 (510)
T ss_pred CCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhcc
Confidence 9999999999999996654443 21 146678899999999999999996 4555554444444110
Q ss_pred -------------CCCCCCC--------------------------------------------cc--------------
Q 001975 350 -------------IPKDNPS--------------------------------------------EK-------------- 358 (987)
Q Consensus 350 -------------~pk~~~~--------------------------------------------~~-------------- 358 (987)
.++..+. .+
T Consensus 190 ~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g 269 (510)
T KOG4211|consen 190 PGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQG 269 (510)
T ss_pred ccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCC
Confidence 0000000 00
Q ss_pred -------cccc-cceeeecCCCCCCHHHHHHHhhccCCE-EEEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001975 359 -------DANQ-GTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 359 -------~~~~-~tLfV~NLp~svTeedLrelFs~fG~I-~sVri~--~~skG~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
.... ..++.++||...++.++..+|+..-.+ ..|.+- .+..|-|+|+|.+.++|..|+. -++..+..
T Consensus 270 ~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams-kd~anm~h 347 (510)
T KOG4211|consen 270 GAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG-KDGANMGH 347 (510)
T ss_pred CcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc-cCCcccCc
Confidence 0011 356778999999999999999986554 233333 3356779999999999999987 33333333
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=5.7e-07 Score=99.37 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=72.9
Q ss_pred CCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHc-cCccccccccccc
Q 001975 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIH 347 (987)
Q Consensus 269 e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~L-ng~~l~Gr~L~V~ 347 (987)
..+.++...++|||++|...++|.+|++.|.+||+|+++.+ -..+++|||+|.+.++|+.|..+. +...|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 44566777899999999999999999999999999999987 456679999999999999998764 5567899999999
Q ss_pred ccCCC
Q 001975 348 YSIPK 352 (987)
Q Consensus 348 ~a~pk 352 (987)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.33 E-value=6e-07 Score=99.61 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=131.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
....++|++++...+.+.++..++..+|.+....+ ...++|+++|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999999999999997776643 4678999999999999999999744445666666555443
Q ss_pred CCCCCCC------ccccccccee-eecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHH
Q 001975 350 IPKDNPS------EKDANQGTLV-VFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 350 ~pk~~~~------~~~~~~~tLf-V~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~ 417 (987)
....... .......+++ |.||+..+++++|+..|..+|.|..+++... .+++|||+|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 3322110 1111233555 9999999999999999999999999998653 57899999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCch
Q 001975 418 TLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 418 ~LNG~~I~Gr~LkV~~A~pk~~ 439 (987)
. ....+.++++.+.+..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88899999999999887653
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.5e-07 Score=98.72 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=72.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001975 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A 434 (987)
++.+.|||.-|.+-+++++|.-+|+.||+|.+|.++.+ +-.||||+|++.+++++|.=.|++..|..++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 46679999999999999999999999999999998765 3459999999999999999999999999999999998
Q ss_pred cCCc
Q 001975 435 RPGG 438 (987)
Q Consensus 435 ~pk~ 438 (987)
+.-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 8643
No 122
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.27 E-value=3.5e-06 Score=88.48 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=54.8
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEec-ccccceEEEEeCCHHHHHHHHHHccCccc
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA-CKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit-gksrGfAFVeF~d~e~A~kAl~~Lng~~l 339 (987)
..||||.||.+++||++|+.+|+.|--...+++. ......|||+|++.+.|..||..|+|..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4699999999999999999999999877777762 23446899999999999999999998765
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.4e-07 Score=113.61 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=120.7
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
..++||+||+..+.+.+|...|..+|.+..+++ .++.||+|||.|...++|.+|+....+..+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----------
Confidence 368999999999999999999999998877753 6789999999999999999999644443332
Q ss_pred CCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001975 352 KDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 352 k~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
...++|.|.|+..|.++|+.+|..+|.+++++++. ..+|.++|.|.+..+|.++....++..+.-+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 23689999999999999999999999999987653 4678999999999999999999998888888
Q ss_pred EEEEEeccC
Q 001975 428 QIKLEASRP 436 (987)
Q Consensus 428 ~LkV~~A~p 436 (987)
.+.|..+.|
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 888888776
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.2e-06 Score=96.78 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
...|...|||..|.+-+|+++|.-+|+.||.|.+|.+ ++.+..||||+|.+.+++++|.-.|++..|..+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 4457799999999999999999999999999999864 67888999999999999999999999999999999999
Q ss_pred ccCCC
Q 001975 348 YSIPK 352 (987)
Q Consensus 348 ~a~pk 352 (987)
|++.-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98643
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.17 E-value=3.5e-06 Score=87.85 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhccc-CcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001975 272 YGEHPSRTLFVRNINSNVEDSELKALFEQF-GDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~f-G~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~ 345 (987)
........+||..+|.-+.+.++..+|.++ |.|+.+++ ||.++|||||+|++.+.|+-|-+.||+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345566889999999999999999999999 67777765 799999999999999999999999999999999999
Q ss_pred ccccCCC
Q 001975 346 IHYSIPK 352 (987)
Q Consensus 346 V~~a~pk 352 (987)
|++-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987554
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.08 E-value=3.2e-06 Score=90.33 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=118.6
Q ss_pred EEEEccCCCCCChHH-H--HHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 279 TLFVRNINSNVEDSE-L--KALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 279 tLfVgNLP~~vTEed-L--relFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
.+++.++-..+..+- | ...|+.|-.+...++ .+..++++|+.|.....-.++-.+-+++.+...++++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 344555555544443 2 455665554444332 466789999999998888888887888888888777655544
Q ss_pred CCCCC--cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCee
Q 001975 352 KDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (987)
Q Consensus 352 k~~~~--~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I 424 (987)
-.++. +-+...-.||.+.|..+++++.|-..|.+|-.....+++ .+++||+||.|.++.++..|+++|||+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 44332 234455689999999999999999999998765444443 45789999999999999999999999999
Q ss_pred CCcEEEEEeccCCc
Q 001975 425 AGKQIKLEASRPGG 438 (987)
Q Consensus 425 ~Gr~LkV~~A~pk~ 438 (987)
+.++|++..+.-++
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99999987665544
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.03 E-value=1.2e-05 Score=83.81 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=71.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhcc-CCEEEEEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001975 359 DANQGTLVVFNLDSSVSTEELHQIFGIY-GEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 359 ~~~~~tLfV~NLp~svTeedLrelFs~f-G~I~sVri-----~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
....+.++|..+|.-+.+.+|..+|.+| |.|..+++ +++++|||||+|++.+.|.-|-+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 77788877 45689999999999999999999999999999999999
Q ss_pred eccCC
Q 001975 433 ASRPG 437 (987)
Q Consensus 433 ~A~pk 437 (987)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 97776
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.03 E-value=7.4e-07 Score=100.04 Aligned_cols=149 Identities=17% Similarity=0.340 Sum_probs=123.8
Q ss_pred cEEEEccCCCCCChHHHHHhhcccC--cEEEEEecccccceEEEEeCCHHHHHHHHHHccCc-ccccccccccccCCCCC
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFG--DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK-PLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG--~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~-~l~Gr~L~V~~a~pk~~ 354 (987)
..+|++||.+.++.++|..+|...- --..+- ...||+||.+.+...|.+|++.++|+ .+.|+++.|.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 4689999999999999999998541 000111 24689999999999999999999995 68999999999988765
Q ss_pred CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-CCC-cEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001975 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-HKH-NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 355 ~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-~sk-G~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+ .+.+.|.|+|+..-++.|..+..+||.+..|..+. ++. -..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 5 45699999999999999999999999999886543 221 234578999999999999999999999999999
Q ss_pred ecc
Q 001975 433 ASR 435 (987)
Q Consensus 433 ~A~ 435 (987)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 853
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.02 E-value=5.3e-06 Score=86.14 Aligned_cols=91 Identities=19% Similarity=0.356 Sum_probs=60.2
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEec--cc--ccccceeEEEEEecCCchhhHHHHHHhcCCcccCCC
Q 001975 810 DSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLP--ID--FKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFN 885 (987)
Q Consensus 810 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~Ylp--iD--f~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 885 (987)
..++.|.||++|..+|++.+++.|+......++|-|.+ .+ --..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46889999999999999999998887666665555544 22 223345788999999999999999999999998665
Q ss_pred Cc-cEEEEEeecccCH
Q 001975 886 SE-KVASLAYARIQGK 900 (987)
Q Consensus 886 s~-Kv~~v~yA~iQG~ 900 (987)
.. -++.|.||-.|-.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 44 5899999998754
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.97 E-value=1e-05 Score=93.50 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=69.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
.++|+|.+|...+-..+|+.+|++||+|+-.+|+.+ .+.|+||++.+.++|.++|..|+..++.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 458999999999999999999999999999888654 467999999999999999999999999999999999875
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.95 E-value=1.6e-05 Score=94.40 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=74.8
Q ss_pred CCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--------cccccceEEEEeCCHHHHHHHHHHccCccc
Q 001975 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--------ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 268 ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--------tgksrGfAFVeF~d~e~A~kAl~~Lng~~l 339 (987)
+....+...+++|||+||++.++++.|...|..||+|.++++ ..+.+.|+||.|-+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 444556777899999999999999999999999999999986 244667999999999999999999999999
Q ss_pred ccccccccccCC
Q 001975 340 RRRKLDIHYSIP 351 (987)
Q Consensus 340 ~Gr~L~V~~a~p 351 (987)
.+..+++.|+.+
T Consensus 245 ~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 245 MEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeccccc
Confidence 999999999843
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.92 E-value=1.4e-05 Score=92.40 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=68.2
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
.-.++|||.+|...+-..+|+++|++||+|+..++ +.-.++|+||++.+.++|.+||..|+.++|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999998765 2346789999999999999999999999999999999766
Q ss_pred C
Q 001975 350 I 350 (987)
Q Consensus 350 ~ 350 (987)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 133
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.82 E-value=2.4e-05 Score=92.85 Aligned_cols=78 Identities=28% Similarity=0.381 Sum_probs=71.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001975 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 359 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~--------~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
+...++|||.||++.++++.|...|..||.|..|+++- ..+.++||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45677999999999999999999999999999999862 2467899999999999999999999999999999
Q ss_pred EEeccC
Q 001975 431 LEASRP 436 (987)
Q Consensus 431 V~~A~p 436 (987)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999954
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.81 E-value=3.5e-05 Score=83.46 Aligned_cols=81 Identities=26% Similarity=0.374 Sum_probs=71.3
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
.+....+|+|.|||..|+++||+++|++||.+..+-+ .+.+.|.|-|.|...++|.+|++.++|..+.|+.|.+..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3444588999999999999999999999998887754 688899999999999999999999999999999998877
Q ss_pred cCCCC
Q 001975 349 SIPKD 353 (987)
Q Consensus 349 a~pk~ 353 (987)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 65443
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.74 E-value=3.6e-05 Score=89.30 Aligned_cols=75 Identities=25% Similarity=0.443 Sum_probs=64.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk 437 (987)
.+|||+|||.+++.++|+++|..||.|+..+|... ...||||+|++.++++.||++ +-..+++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 46999999999999999999999999998665421 237999999999999999994 578899999999987764
Q ss_pred c
Q 001975 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 4
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.74 E-value=2.3e-05 Score=82.27 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=67.8
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
..+||||.|+-..++++-|.++|-+-|.|..|.|... ...||||.|.++-...-|++.|||..+.+..|+|.+-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3579999999999999999999999999999988643 223999999999999999999999999999999987543
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.68 E-value=0.00011 Score=79.56 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=69.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
...+|+|.|||..++++||+++|.+||.++.+-+-. .+.|.|-|.|...++|.+|++.+||..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 346899999999999999999999999888876643 3568999999999999999999999999999999998776
Q ss_pred Cc
Q 001975 437 GG 438 (987)
Q Consensus 437 k~ 438 (987)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 54
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.66 E-value=4.1e-05 Score=88.82 Aligned_cols=74 Identities=26% Similarity=0.435 Sum_probs=62.6
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---c--ccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---t--gksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
..+|||+|||.++++++|+++|.+||+|+...+ . ++..+||||+|.+.++++.|+. .+-..+++++|.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 456999999999999999999999999998754 2 3444899999999999999996 457788999999875443
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.65 E-value=8.3e-05 Score=82.63 Aligned_cols=74 Identities=15% Similarity=0.344 Sum_probs=66.2
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~s--------Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~L 429 (987)
...|||.|||.++|.+++.++|++||.|.. |++..+ -+|-|.|+|.-.++..-|++.|++..|.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 456999999999999999999999999875 556543 46779999999999999999999999999999
Q ss_pred EEEecc
Q 001975 430 KLEASR 435 (987)
Q Consensus 430 kV~~A~ 435 (987)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999885
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.59 E-value=0.00025 Score=64.79 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=48.8
Q ss_pred cceeeecCCCCCCHH----HHHHHhhccC-CEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 363 GTLVVFNLDSSVSTE----ELHQIFGIYG-EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 363 ~tLfV~NLp~svTee----dLrelFs~fG-~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
..|+|.|||.+.+.. .|++++..|| +|.+|. .+.|+|.|.+.+.|++|.+.|+|..+-|.+|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999998864 4667777886 566653 68999999999999999999999999999999999753
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.51 E-value=0.0001 Score=79.80 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=70.1
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001975 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+......+||+|++..++.+++..+|+.||.|..+.+.. +.+||+||+|.+.+.+++|++ |||..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345667899999999999999999999999998766543 468999999999999999999 99999999999999
Q ss_pred eccCC
Q 001975 433 ASRPG 437 (987)
Q Consensus 433 ~A~pk 437 (987)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 97754
No 142
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.44 E-value=5.3e-05 Score=85.07 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=117.0
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEec--------ccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkit--------gksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
..|-|.||.+++|.++++.||.-.|+|..+.+- ......|||.|.|...+..|- .|.++++-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 489999999999999999999999999998651 224568999999999999887 47777777766655221
Q ss_pred -CCCC----------------------------CCC--------------cc---------cccccceeeecCCCCCCHH
Q 001975 350 -IPKD----------------------------NPS--------------EK---------DANQGTLVVFNLDSSVSTE 377 (987)
Q Consensus 350 -~pk~----------------------------~~~--------------~~---------~~~~~tLfV~NLp~svTee 377 (987)
.+.. .+. .. ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1000 000 00 0012589999999999999
Q ss_pred HHHHHhhccCCEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 378 ELHQIFGIYGEIREIRDTQ-HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 378 dLrelFs~fG~I~sVri~~-~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
++-+.|..+|+|...++.. ....+|-|+|........|++ ++|.++.-....+....|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 9999999999999877653 345688899999999999999 788877644333333333
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.42 E-value=0.00043 Score=77.77 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=109.4
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhccc-----CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQF-----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~f-----G~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
..+..|-.++||+..++.+|..+|+-. |.+......++..|.|.|.|.|.|.-+-|++ -+...+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 455677889999999999999999743 3333334467788999999999999999996 5677778888877544
Q ss_pred CCCCC---------CCc---ccccccceeeecCCCCCCHHHHHHHhhcc----CCEEEEEEc----CCCCcEEEEEECCH
Q 001975 350 IPKDN---------PSE---KDANQGTLVVFNLDSSVSTEELHQIFGIY----GEIREIRDT----QHKHNHKFIEFYDI 409 (987)
Q Consensus 350 ~pk~~---------~~~---~~~~~~tLfV~NLp~svTeedLrelFs~f----G~I~sVri~----~~skG~aFVeF~d~ 409 (987)
...+- ... ...++-.|.+++||.++++.|+.++|.+- |..+.|-++ ++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 33321 000 11234467889999999999999999742 222333322 23467899999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEE
Q 001975 410 RAAETALRTLNRSDVAGKQIKL 431 (987)
Q Consensus 410 edA~kAL~~LNG~~I~Gr~LkV 431 (987)
++|+.||. -|...|+-|-|.+
T Consensus 217 e~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 217 EDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred HHHHHHHH-HHHHHHhHHHHHH
Confidence 99999998 4554555444443
No 144
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.41 E-value=0.00024 Score=84.38 Aligned_cols=165 Identities=13% Similarity=0.025 Sum_probs=119.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhccc-CcEEEE---EecccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQF-GDIRTI---YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~f-G~I~sV---kitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
-....+.+-+++.+.+..+.+++++|..- -.-..+ .+.+...|-++|.|....++++|++ -|...+..|.+.+.-
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGP 385 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecC
Confidence 34456777888999999999999999732 222222 3445558999999999999999995 555555566655522
Q ss_pred cCCC------------C-----------------CC--C----cccccccceeeecCCCCCCHHHHHHHhhccCCEEE-E
Q 001975 349 SIPK------------D-----------------NP--S----EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-I 392 (987)
Q Consensus 349 a~pk------------~-----------------~~--~----~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~s-V 392 (987)
.... . .. . -.......|||+.||..+++.++-++|..--.|++ |
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 1100 0 00 0 00112358999999999999999999998777776 6
Q ss_pred EEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 393 RDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 393 ri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
.+..- .++-|||+|..++++.+|...-+...++-+.|+|.-...+.
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 66532 35679999999999999999888888899999998765544
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.34 E-value=0.00024 Score=76.95 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
..+...+.+||+|+...+|.+++...|+.||.|..+.+ .+..+||+||+|.+.+.++.|++ |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 45567799999999999999999999999999975532 56689999999999999999997 9999999999999
Q ss_pred cccCCC
Q 001975 347 HYSIPK 352 (987)
Q Consensus 347 ~~a~pk 352 (987)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 776433
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.32 E-value=0.00062 Score=62.33 Aligned_cols=69 Identities=19% Similarity=0.382 Sum_probs=48.8
Q ss_pred cEEEEccCCCCCChHHH----HHhhcccC-cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 278 RTLFVRNINSNVEDSEL----KALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 278 rtLfVgNLP~~vTEedL----relFs~fG-~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
..|||.|||.+.+...| +.++..|| +|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 46999999999887655 46777887 56665 357999999999999999999999999999999999743
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.31 E-value=0.00084 Score=63.39 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=63.7
Q ss_pred cceeeecCCCCCCHHHHHHHhhcc--CCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVA----GKQIKL 431 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~f--G~I~sVri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~----Gr~LkV 431 (987)
+||.|+|||...|.++|.+++... |...-+.++- -+.|||||.|.++++|.+-.+.++|+... .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988763 4444344432 25799999999999999999999999764 577889
Q ss_pred EeccCCchhhc
Q 001975 432 EASRPGGARRF 442 (987)
Q Consensus 432 ~~A~pk~~Rrl 442 (987)
.||+-.+...+
T Consensus 82 ~yAriQG~~al 92 (97)
T PF04059_consen 82 SYARIQGKDAL 92 (97)
T ss_pred ehhHhhCHHHH
Confidence 99987664333
No 148
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.30 E-value=0.00023 Score=76.52 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=66.3
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEE-----EecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV-----kitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
...-.||.+.|.-+++++-|...|.+|-..... +-+++++||+||.|.+..++..|+++|+|+.++.+.|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 445789999999999999999999998753322 237999999999999999999999999999999999988655
Q ss_pred CC
Q 001975 350 IP 351 (987)
Q Consensus 350 ~p 351 (987)
.-
T Consensus 268 ~w 269 (290)
T KOG0226|consen 268 EW 269 (290)
T ss_pred hH
Confidence 43
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.24 E-value=0.00091 Score=74.62 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=69.4
Q ss_pred CCCcEEE-EccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 275 HPSRTLF-VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 275 ~~srtLf-VgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
.+..++| |++|+.++++++|++.|..+|.|..+++ ++..+|||||.|.....+..|+.. +...+.++.+.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445555 9999999999999999999999999976 678899999999999999999976 88899999999998
Q ss_pred cCCCCC
Q 001975 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 876644
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=8.9e-05 Score=90.09 Aligned_cols=148 Identities=15% Similarity=0.151 Sum_probs=115.5
Q ss_pred CcEEEEccCCCCCChH-HHHHhhcccCcEEEEEecc----cc-cceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001975 277 SRTLFVRNINSNVEDS-ELKALFEQFGDIRTIYTAC----KH-RGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 277 srtLfVgNLP~~vTEe-dLrelFs~fG~I~sVkitg----ks-rGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~ 350 (987)
.+...+.++.+..... ..+..|..+|.|+.|+... .+ ..++++.+....+++.|.. ..+.-+.++.+.|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 3566777777776665 5778999999999997632 12 2288999999999999984 78888999999888877
Q ss_pred CCCCCCccc------ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHh
Q 001975 351 PKDNPSEKD------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 351 pk~~~~~~~------~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~-----~~skG~aFVeF~d~edA~kAL~~L 419 (987)
+........ ....++||+||+..+.+++|...|..+|.+..+++. .+-+|+|||+|..+++|.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 665332211 123589999999999999999999999999887654 346899999999999999999955
Q ss_pred CCCeeC
Q 001975 420 NRSDVA 425 (987)
Q Consensus 420 NG~~I~ 425 (987)
.+..++
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 555444
No 151
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0035 Score=73.25 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=55.0
Q ss_pred CCCCCCCCcEEEEccCCCCCChHHHHHhhc-ccCcEEEEEe--c---ccccceEEEEeCCHHHHHHHHH
Q 001975 270 HPYGEHPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYT--A---CKHRGFVMISYYDIRAARNAMK 332 (987)
Q Consensus 270 ~~~~e~~srtLfVgNLP~~vTEedLrelFs-~fG~I~sVki--t---gksrGfAFVeF~d~e~A~kAl~ 332 (987)
....-.+.+||||++||.-++.++|..+|+ -||.|..+-| + +-.+|-|-|+|.+..+-.+||.
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 344567889999999999999999999999 9999988754 2 4578999999999999999996
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.13 E-value=0.0009 Score=64.05 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=49.0
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC-----eeCCcEEEEEeccCCc
Q 001975 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-----DVAGKQIKLEASRPGG 438 (987)
Q Consensus 364 tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~-----~I~Gr~LkV~~A~pk~ 438 (987)
.|+|.+++..++.++|++.|++||.|..|.+.. ....|||.|.+.++|++|+..+... .|.+..++++.-.-.+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGee 81 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEE 81 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHH
Confidence 578999999999999999999999999998764 3557999999999999999877544 6778887777655444
Q ss_pred hhh
Q 001975 439 ARR 441 (987)
Q Consensus 439 ~Rr 441 (987)
+..
T Consensus 82 E~~ 84 (105)
T PF08777_consen 82 EEE 84 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.96 E-value=0.0025 Score=70.76 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=65.5
Q ss_pred ccceeeecCCCCCCHHH----H--HHHhhccCCEEEEEEcCCC------Cc-E-EEEEECCHHHHHHHHHHhCCCeeCCc
Q 001975 362 QGTLVVFNLDSSVSTEE----L--HQIFGIYGEIREIRDTQHK------HN-H-KFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 362 ~~tLfV~NLp~svTeed----L--relFs~fG~I~sVri~~~s------kG-~-aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
..-+||-+|++.+..|+ | .++|.+||+|..|.+.++. .+ + .||+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887776 2 4799999999998876431 12 3 49999999999999999999999999
Q ss_pred EEEEEeccCCchh
Q 001975 428 QIKLEASRPGGAR 440 (987)
Q Consensus 428 ~LkV~~A~pk~~R 440 (987)
.|+..|...|--.
T Consensus 194 ~lkatYGTTKYCt 206 (480)
T COG5175 194 VLKATYGTTKYCT 206 (480)
T ss_pred eEeeecCchHHHH
Confidence 9999998876533
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.95 E-value=0.00078 Score=74.60 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=69.0
Q ss_pred CCcEEEEccCCCCCChHHHH------HhhcccCcEEEEEecccc------cce--EEEEeCCHHHHHHHHHHccCccccc
Q 001975 276 PSRTLFVRNINSNVEDSELK------ALFEQFGDIRTIYTACKH------RGF--VMISYYDIRAARNAMKALQNKPLRR 341 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLr------elFs~fG~I~sVkitgks------rGf--AFVeF~d~e~A~kAl~~Lng~~l~G 341 (987)
...-+||-+||+.+..++.. ++|.+||.|..|.+..+. .+. .||+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 44678999999998877732 799999999998763331 122 4999999999999999999999999
Q ss_pred ccccccccCCCCCCCcccccccceeeecCC
Q 001975 342 RKLDIHYSIPKDNPSEKDANQGTLVVFNLD 371 (987)
Q Consensus 342 r~L~V~~a~pk~~~~~~~~~~~tLfV~NLp 371 (987)
|.|+..|...| -++-|++|++
T Consensus 193 r~lkatYGTTK---------YCtsYLRn~~ 213 (480)
T COG5175 193 RVLKATYGTTK---------YCTSYLRNAV 213 (480)
T ss_pred ceEeeecCchH---------HHHHHHcCCC
Confidence 99999987543 3456666653
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.69 E-value=0.0021 Score=73.39 Aligned_cols=74 Identities=30% Similarity=0.395 Sum_probs=59.8
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------------------CCcEEEEEECCHHHH
Q 001975 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------------------KHNHKFIEFYDIRAA 412 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~------------------skG~aFVeF~d~edA 412 (987)
|-.+........++|.+.|||.+-..+-|.++|+.+|.|+.|+|..- .+-+|+|+|+..+.|
T Consensus 220 Plp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred CCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 33333344457889999999999999999999999999999998521 134699999999999
Q ss_pred HHHHHHhCCCee
Q 001975 413 ETALRTLNRSDV 424 (987)
Q Consensus 413 ~kAL~~LNG~~I 424 (987)
.+|.+.|+...-
T Consensus 300 ~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 300 RKARELLNPEQN 311 (484)
T ss_pred HHHHHhhchhhh
Confidence 999998866544
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.46 E-value=0.0057 Score=51.49 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=43.1
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHH
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETAL 416 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL 416 (987)
+.|-|.+.+.+..+. +...|..||+|..+.+. ....+.||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 467888998877654 55588899999999876 34779999999999999995
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.44 E-value=0.007 Score=57.56 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=54.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEE------------EcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc-
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR------------DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK- 427 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVr------------i~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr- 427 (987)
....|.|.+.|+. ....+.+.|++||+|.+.. -.+...++..|+|+++.+|.+||+ .||..|.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456899999998 5567888999999998875 223456789999999999999999 899999986
Q ss_pred EEEEEeccC
Q 001975 428 QIKLEASRP 436 (987)
Q Consensus 428 ~LkV~~A~p 436 (987)
.+-|.++++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 445777643
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.29 E-value=0.0036 Score=71.66 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=61.6
Q ss_pred CCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEeccc------------------ccceEEEEeCCHHHHHHHH
Q 001975 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------------------HRGFVMISYYDIRAARNAM 331 (987)
Q Consensus 270 ~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgk------------------srGfAFVeF~d~e~A~kAl 331 (987)
...++.++++|.+.|||.+-.-+.|.++|..+|.|..|++-.. .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3445678999999999999999999999999999999987111 2458999999999999999
Q ss_pred HHccCccccccccccc
Q 001975 332 KALQNKPLRRRKLDIH 347 (987)
Q Consensus 332 ~~Lng~~l~Gr~L~V~ 347 (987)
+.|+...-...-++|.
T Consensus 304 e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 304 ELLNPEQNWRMGLKVK 319 (484)
T ss_pred Hhhchhhhhhhcchhh
Confidence 8776554444444443
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.27 E-value=0.0094 Score=57.13 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCc
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK 337 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~ 337 (987)
..|+|.+++..++.++|++.|++||+|..|.. .+...-|||.|.+.++|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46899999999999999999999999999987 334558999999999999999876544
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.27 E-value=0.0036 Score=70.47 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=68.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~s--------Vri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
...+|||.+||..+++++|.++|.++|.|+. |.+. ...|+-|.|.|.|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4569999999999999999999999999975 2222 23678899999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001975 428 QIKLEASRPGG 438 (987)
Q Consensus 428 ~LkV~~A~pk~ 438 (987)
+|+|.+|..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999998765
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.22 E-value=0.0084 Score=50.49 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=43.6
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHH
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 331 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl 331 (987)
+.|-|.+.+++..+. +...|..||+|..+.++ ....+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 578899998876644 55589999999999884 56779999999999999985
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.99 E-value=0.0043 Score=67.08 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=59.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC---------------CcE--EEEEECCHHHHHHHHHHhCCCe
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---------------HNH--KFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~s---------------kG~--aFVeF~d~edA~kAL~~LNG~~ 423 (987)
..+.||+++||+......|+++|++||.|-+|.+.+.. ..| |+|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999999999999886421 112 8999999999999999999999
Q ss_pred eCCcE
Q 001975 424 VAGKQ 428 (987)
Q Consensus 424 I~Gr~ 428 (987)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99865
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.94 E-value=0.0087 Score=64.83 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCc
Q 001975 325 RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHN 400 (987)
Q Consensus 325 e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~----~skG 400 (987)
.-|..|-.+|++....++.++|.|+.. ..|||.||...++.|.|.+.|+.||.|....+.- ...+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 346777788999999999999999852 4799999999999999999999999997733322 2345
Q ss_pred EEEEEECCHHHHHHHHHHhCCCee
Q 001975 401 HKFIEFYDIRAAETALRTLNRSDV 424 (987)
Q Consensus 401 ~aFVeF~d~edA~kAL~~LNG~~I 424 (987)
-++|+|...-.|.+|+..++-.-+
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCcc
Confidence 689999999999999998754433
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.83 E-value=0.0086 Score=67.55 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=69.6
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE-------------ecccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-------------TACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-------------itgksrGfAFVeF~d~e~A~kAl~~Lng~~l~ 340 (987)
....-+|||-+||..+++++|.++|.+||.|..=+ .+.+.|+-|.|+|.|...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44568999999999999999999999999886431 26789999999999999999999999999999
Q ss_pred cccccccccCCC
Q 001975 341 RRKLDIHYSIPK 352 (987)
Q Consensus 341 Gr~L~V~~a~pk 352 (987)
+..|+|..+..+
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999887544
No 165
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=95.80 E-value=0.0047 Score=70.26 Aligned_cols=75 Identities=19% Similarity=0.412 Sum_probs=62.1
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEe-cccccccce-eEEEEEecCCchhhHHHHHHhcCCcccCCC
Q 001975 810 DSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYL-PIDFKNKCN-VGYAFINMIDPRQIIPFHQAFNGKKWEKFN 885 (987)
Q Consensus 810 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~Yl-piDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 885 (987)
+....|.||++|+++|.+.|++.||- +...+.|-|. |-|+....+ .+.|||||..+.++..|.+.|+|+.+-.-.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 34567999999999999999999998 7788888754 466654444 677999999999999999999999876443
No 166
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.73 E-value=0.013 Score=72.37 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=71.2
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccC
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~G--r~L~V~~a~ 350 (987)
...+.+.++|++|+..+....|...|..||.|+.|.+ ....-||||.|.+...|+.|++.|.|..|++ +.+.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4457799999999999999999999999999999987 4556799999999999999999999999986 678888886
Q ss_pred CCCC
Q 001975 351 PKDN 354 (987)
Q Consensus 351 pk~~ 354 (987)
+...
T Consensus 530 ~~~~ 533 (975)
T KOG0112|consen 530 PPGA 533 (975)
T ss_pred CCCC
Confidence 5543
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.66 E-value=0.0056 Score=66.32 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=50.8
Q ss_pred HHHHHHhh-ccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 377 EELHQIFG-IYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 377 edLrelFs-~fG~I~sVri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
++|...|+ +||+|+++.|-.+ -.|-+||.|...++|++|++.||+.+|.|++|..++.--..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555556 8999999865432 35779999999999999999999999999999999875433
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.34 E-value=0.033 Score=61.29 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001975 376 TEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 376 eedLrelFs~fG~I~sVri~~~------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~p 436 (987)
++++++.+++||+|..|.|... ..--.||+|...++|.+|+-.|||+.|+|+.+...|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5778999999999998766432 122479999999999999999999999999999888754
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.19 E-value=0.059 Score=54.51 Aligned_cols=77 Identities=29% Similarity=0.384 Sum_probs=54.4
Q ss_pred cccccceeeecCCC------CCCH---HHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 001975 359 DANQGTLVVFNLDS------SVST---EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (987)
Q Consensus 359 ~~~~~tLfV~NLp~------svTe---edLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~L 429 (987)
.++..||.|.=+.+ ..++ ++|.+.|..||++.=||+.. +.-+|+|.+-+.|.+|+. |+|.+++|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 34567777776551 2222 36788899999998888764 478999999999999999 99999999999
Q ss_pred EEEeccCCch
Q 001975 430 KLEASRPGGA 439 (987)
Q Consensus 430 kV~~A~pk~~ 439 (987)
+|....|.-.
T Consensus 100 ~i~LKtpdW~ 109 (146)
T PF08952_consen 100 KIRLKTPDWL 109 (146)
T ss_dssp EEEE------
T ss_pred EEEeCCccHH
Confidence 9999877553
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.06 E-value=0.014 Score=63.27 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=59.4
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec-------------ccccc----eEEEEeCCHHHHHHHHHHccCc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA-------------CKHRG----FVMISYYDIRAARNAMKALQNK 337 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit-------------gksrG----fAFVeF~d~e~A~kAl~~Lng~ 337 (987)
+..-.||+++||+.+.-.-|+++|++||.|-.|++. +..+. -|.|+|.+...|+++...||+.
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 367899999999999999999999999999999761 11222 2789999999999999999999
Q ss_pred cccccc
Q 001975 338 PLRRRK 343 (987)
Q Consensus 338 ~l~Gr~ 343 (987)
.|+|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999875
No 171
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.98 E-value=0.04 Score=66.40 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=61.8
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEE-EEE----ecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIR-TIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~-sVk----itgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
.+.|-+.|+|.+++-+||.++|..|-.+- +|+ ..++..|-|.|.|++.++|.+|...|+++.|..+.+++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 35899999999999999999999997543 232 267888999999999999999999999999999988764
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.57 E-value=0.063 Score=51.17 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=52.3
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEE------------ecccccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001975 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY------------TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk------------itgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~ 343 (987)
..+.|.|=+.|+. ....+.+.|++||+|.+.. -......+..|.|.++.+|++||. .||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567899999987 6678889999999998875 112355699999999999999995 8999998754
Q ss_pred c-ccccc
Q 001975 344 L-DIHYS 349 (987)
Q Consensus 344 L-~V~~a 349 (987)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 35554
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.45 E-value=0.063 Score=63.53 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=54.2
Q ss_pred CCCcEEEEccCCCCC--C----hHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccc
Q 001975 275 HPSRTLFVRNINSNV--E----DSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (987)
Q Consensus 275 ~~srtLfVgNLP~~v--T----EedLrelFs~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~G 341 (987)
.-...|+|.|+|.-- . ..-|.++|+++|+|..+.+ .+..+||.|++|.+.++|+.|++.|||+.|.-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 345789999998531 1 2344579999999998875 46799999999999999999999999988764
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.26 E-value=0.042 Score=62.55 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=61.9
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~--------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A 434 (987)
+.|.|.||.++++.++++.+|.-.|+|.++++++. ....|||.|.|...+..|-. |.+..|=++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999999874 23469999999999998877 8888887887777665
Q ss_pred c
Q 001975 435 R 435 (987)
Q Consensus 435 ~ 435 (987)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 175
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.11 E-value=0.3 Score=47.44 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=66.0
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEE
Q 001975 811 SRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVA 890 (987)
Q Consensus 811 ~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~ 890 (987)
.+|+|-+=-+|+.++...++..+-+.+.....-+.+--|.. -|.-=+-|-|.++++|..||+.|||+++...-. .+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 45666666889999988777667677777777666655643 466678999999999999999999999887755 459
Q ss_pred EEEe-eccc
Q 001975 891 SLAY-ARIQ 898 (987)
Q Consensus 891 ~v~y-A~iQ 898 (987)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 176
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.99 E-value=0.037 Score=63.43 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=62.9
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeccCCchhh
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-DVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~-~I~Gr~LkV~~A~pk~~Rr 441 (987)
..||+.||.+.++..+|..+|...-.-..-.++ -..||+||.+.+...|.+|++.++|+ ++.|+++.|..+.++..|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 368999999999999999999864110000011 14689999999999999999999998 7899999999999987654
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.63 E-value=0.19 Score=59.68 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=58.5
Q ss_pred cccceeeecCCCCCC------HHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeC-CcEE
Q 001975 361 NQGTLVVFNLDSSVS------TEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQI 429 (987)
Q Consensus 361 ~~~tLfV~NLp~svT------eedLrelFs~fG~I~sVri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~-Gr~L 429 (987)
....|+|.|+|.--. ..-|..+|+++|+|..+.++. ..+||.|++|.+..+|+.|++.|||+.|. .+++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 345788999885322 345678999999999887763 36889999999999999999999999885 5677
Q ss_pred EEEec
Q 001975 430 KLEAS 434 (987)
Q Consensus 430 kV~~A 434 (987)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 76543
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.56 E-value=0.23 Score=57.83 Aligned_cols=81 Identities=26% Similarity=0.317 Sum_probs=70.7
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEE
Q 001975 812 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVAS 891 (987)
Q Consensus 812 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~ 891 (987)
-|+|-|=-+|+.+|..+|+..+...++-=-|+-.++ ...-|.--+-|-|.+..+|..||+.|||+.+...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR---d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR---DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee---cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 788889999999999999999998887777888888 3455666689999999999999999999998877666 999
Q ss_pred EEeec
Q 001975 892 LAYAR 896 (987)
Q Consensus 892 v~yA~ 896 (987)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.08 E-value=0.073 Score=59.75 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=61.0
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccC--cEEEE-----EecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFG--DIRTI-----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG--~I~sV-----kitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
+.....+||+||-+.+|++||.+.....| .+.++ +..|.+||||+|...+..+.++-++.|-.+.|+|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33457899999999999999999888776 23333 347999999999999999999999999999999876555
Q ss_pred c
Q 001975 347 H 347 (987)
Q Consensus 347 ~ 347 (987)
-
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 3
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.04 E-value=0.038 Score=60.08 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=47.3
Q ss_pred HHHHhhc-ccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 293 ELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 293 dLrelFs-~fG~I~sVki----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
+|...|+ +||+|+.+++ ...-+|-+||.|...++|++|+..||+..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 9999999865 2235688999999999999999999999999999998876
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.01 E-value=0.32 Score=49.00 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=58.1
Q ss_pred cccccceeeecCCCCC----CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001975 359 DANQGTLVVFNLDSSV----STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~sv----TeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A 434 (987)
+.+-.||.|.=|..++ +-..+....+.||+|.+|...+ +..|.|.|.|..+|.+|+.++.. ..-|..+++.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 4456688887665555 3344455667899999998765 67899999999999999998876 667888898886
Q ss_pred cC
Q 001975 435 RP 436 (987)
Q Consensus 435 ~p 436 (987)
++
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 54
No 182
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.34 E-value=0.083 Score=59.49 Aligned_cols=106 Identities=15% Similarity=0.234 Sum_probs=77.6
Q ss_pred ccceeeecCCCCCCHHHHH---HHhhccCCEEEEEEcCCC------C--cEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001975 362 QGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQHK------H--NHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLr---elFs~fG~I~sVri~~~s------k--G~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
..-+||-+|+..+.++.+. +.|.+||.|..|.+..+. . .-++|+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3467888888877655553 489999999998876532 1 1389999999999999999999999999999
Q ss_pred EEeccCCchhhccchhhhhccCCccc----cCCCCCCCcccc
Q 001975 431 LEASRPGGARRFMVQSEQEQDDLNLC----QIPFDDLSSGQM 468 (987)
Q Consensus 431 V~~A~pk~~Rrl~qq~eq~q~e~nly----kNLp~svt~e~L 468 (987)
..+...+..-. ..+.+.+|....+| ..-.++++.+++
T Consensus 157 a~~gttkycs~-~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~ 197 (327)
T KOG2068|consen 157 ASLGTTKYCSF-YLRNDICQNPDCMYLHEIGDQEDSFTKDEM 197 (327)
T ss_pred HhhCCCcchhH-HhhhhcccCccccccccccccccccchHHH
Confidence 99998877543 22255666666777 333444444444
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.10 E-value=0.12 Score=61.54 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=66.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhc-cCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCee---CCcEEEEEec
Q 001975 359 DANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV---AGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~svTeedLrelFs~-fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I---~Gr~LkV~~A 434 (987)
....+.|+|.||-.-+|.-+|++++.. .|.|.+. +|-+-+..|||.|.+.++|...+.+|||... +++.|.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 345679999999999999999999995 5666666 4545578999999999999999999999854 6789999998
Q ss_pred cCCc
Q 001975 435 RPGG 438 (987)
Q Consensus 435 ~pk~ 438 (987)
...+
T Consensus 520 ~~de 523 (718)
T KOG2416|consen 520 RADE 523 (718)
T ss_pred chhH
Confidence 7654
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.97 E-value=0.11 Score=62.05 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=58.9
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhc-ccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc
Q 001975 271 PYGEHPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs-~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l 339 (987)
+.....+..|+|.||-.-.|.-+|++++. .+|.|....| .+-+..|||.|.+.++|..-+.+|+|..+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhcccc
Confidence 34667789999999999999999999999 6667777755 56778999999999999999999999765
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.61 E-value=0.43 Score=48.43 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=52.8
Q ss_pred CCCCcEEEEccCCC-----CCCh----HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccc
Q 001975 274 EHPSRTLFVRNINS-----NVED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (987)
Q Consensus 274 e~~srtLfVgNLP~-----~vTE----edLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L 344 (987)
..+..||.|.=+.+ ..-. .+|.+.|..||++.-++.. .+.-+|+|.+-+.|-+|+. ++|..+.|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 34667787776651 1223 3677899999998888763 3578999999999999995 99999999999
Q ss_pred cccccCCC
Q 001975 345 DIHYSIPK 352 (987)
Q Consensus 345 ~V~~a~pk 352 (987)
.|....|.
T Consensus 100 ~i~LKtpd 107 (146)
T PF08952_consen 100 KIRLKTPD 107 (146)
T ss_dssp EEEE----
T ss_pred EEEeCCcc
Confidence 99865543
No 186
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.29 E-value=0.41 Score=53.04 Aligned_cols=75 Identities=17% Similarity=0.381 Sum_probs=55.5
Q ss_pred CCcEEEEccC--CCCCC---hHHHHHhhcccCcEEEEEe---ccc---ccceEEEEeCCHHHHHHHHHHccCcccccccc
Q 001975 276 PSRTLFVRNI--NSNVE---DSELKALFEQFGDIRTIYT---ACK---HRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (987)
Q Consensus 276 ~srtLfVgNL--P~~vT---EedLrelFs~fG~I~sVki---tgk---srGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L 344 (987)
+++.|.++|. +-.++ ++++++-.++||.|..|.+ .+. ..--.||+|...++|.+|+-.|||..|+|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3444555554 22333 4577889999999998865 111 12257999999999999999999999999999
Q ss_pred cccccC
Q 001975 345 DIHYSI 350 (987)
Q Consensus 345 ~V~~a~ 350 (987)
...|..
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 888764
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.08 E-value=0.78 Score=46.35 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=58.4
Q ss_pred CCCCCCcEEEEccCCCCCC----hHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001975 272 YGEHPSRTLFVRNINSNVE----DSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vT----EedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~ 347 (987)
..+.+-.||.|+=|..++. -..+...++.||+|.+|...| +--|.|.|.|..+|-+|+.+++. ...|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4567889999987777653 234456778999999998744 45799999999999999998876 5566777776
Q ss_pred ccC
Q 001975 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 643
No 188
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.58 E-value=0.41 Score=56.06 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=58.2
Q ss_pred eeeecCCCCC-CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001975 365 LVVFNLDSSV-STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 365 LfV~NLp~sv-TeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~pk~ 438 (987)
|-+.-.|... +-++|...|.+||+|..|.+.-. --.|.|+|.+..+|-+|.. .++..|+++.|+|-|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3333344444 56899999999999999886432 4569999999999988887 89999999999999988855
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.32 E-value=1.4 Score=40.91 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=43.7
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng 336 (987)
....+|. +|..+...||.++|+.||.|.--.+ ...-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3566676 9999999999999999999887666 345799999999999999987753
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.06 E-value=0.78 Score=48.43 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=46.8
Q ss_pred CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhC--CCeeCCcEEEEEeccCCc
Q 001975 375 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 375 TeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LN--G~~I~Gr~LkV~~A~pk~ 438 (987)
..+.|+++|..|+.+..+...+. =+-..|.|.+.++|.+|...|+ +..+.|..++|.|+++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999988776653 3458999999999999999999 999999999999996544
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.92 E-value=0.85 Score=54.41 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=58.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcc--cCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC--ccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQ--FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~--fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng--~~l~Gr~L~V~ 347 (987)
.....+.|.++.||..+-+++++.||+. |-++.+|.. ....--||+|++..+|+.|.+.|.. ++|.|++|...
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscef--a~N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEF--AHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee--eecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4455688999999999999999999984 677888865 2223468999999999999998865 56788777654
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.72 E-value=0.34 Score=54.78 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=61.8
Q ss_pred CcEEEEccCCCCCChHHHH---HhhcccCcEEEEEecccc--------cceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001975 277 SRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTACKH--------RGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLr---elFs~fG~I~sVkitgks--------rGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~ 345 (987)
..-+||-+|+..+.++++. +.|.+||.|..|.+.+.. -.-++|+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3568888999887665554 589999999999763321 12489999999999999999999999999999
Q ss_pred ccccCCCC
Q 001975 346 IHYSIPKD 353 (987)
Q Consensus 346 V~~a~pk~ 353 (987)
+.+..++-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 98876653
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.04 E-value=1.3 Score=52.87 Aligned_cols=98 Identities=12% Similarity=0.203 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhc--cCCEEEEEEcCCCCc
Q 001975 323 DIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI--YGEIREIRDTQHKHN 400 (987)
Q Consensus 323 d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~--fG~I~sVri~~~skG 400 (987)
|.+-...+++..-+..++.+-.+|.- ..+.+.|.|+-||..+..|+++.+|.. +-++.+|...-+ .
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp----------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~ 213 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRP----------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--D 213 (684)
T ss_pred chHHHHHHHhcCCCceeccCcccccc----------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--C
Confidence 44445566666666666655555542 234567889999999999999999985 677777775432 2
Q ss_pred EEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEE
Q 001975 401 HKFIEFYDIRAAETALRTLNR--SDVAGKQIKLE 432 (987)
Q Consensus 401 ~aFVeF~d~edA~kAL~~LNG--~~I~Gr~LkV~ 432 (987)
--||+|++..||+.|.+.|.. ++|.||+|...
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 369999999999999988864 36777776543
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.02 E-value=3.2 Score=46.58 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=58.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEeccCCc
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ-IKLEASRPGG 438 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~-LkV~~A~pk~ 438 (987)
..-|-|.++++.-. .-|..+|++||+|.+.. +..+..+-+|.|.+.-+|.|||. .||+.|+|.. |-|..+..|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 45678888887654 45778899999998864 44667799999999999999999 8999998864 4577766544
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.99 E-value=2.3 Score=37.36 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=42.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhcc----CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIY----GEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~f----G~I~sVri~~~skG~aFVeF~d~edA~kAL~~L 419 (987)
..|+|.+++. ++.++|+.+|..| + ...|..+.+ .-|-|-|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 4799999865 8889999999998 4 345555543 46899999999999999865
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.85 E-value=1.1 Score=46.93 Aligned_cols=68 Identities=7% Similarity=0.062 Sum_probs=46.5
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcc-cCcE---EEEE--e-----cccccceEEEEeCCHHHHHHHHHHccCcccccc
Q 001975 275 HPSRTLFVRNINSNVEDSELKALFEQ-FGDI---RTIY--T-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~-fG~I---~sVk--i-----tgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr 342 (987)
....+|.|++||+++||+++.+.+.. +++. ..+. . ....-.-|||.|.+.+++......++|..|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 34569999999999999999998887 7765 3332 1 111234699999999999999999999877544
No 197
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=83.21 E-value=1.1 Score=50.82 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=62.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCC--EEEEEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIYGE--IREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~fG~--I~sVri-----~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (987)
.++||+||-+.+|++||.+.....|- |.++++ .+.+||||+|-..+..+.++-++.|-.++|.|..-.|..+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 47999999999999999998877653 444444 34589999999999999999999999999999877776665
Q ss_pred CCch
Q 001975 436 PGGA 439 (987)
Q Consensus 436 pk~~ 439 (987)
+...
T Consensus 161 K~~~ 164 (498)
T KOG4849|consen 161 KTNQ 164 (498)
T ss_pred hhhH
Confidence 5443
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=83.11 E-value=4.8 Score=37.49 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=41.1
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC
Q 001975 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 364 tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG 421 (987)
..+|. .|..+-..||.++|+.||.|.---+. ..-|||...+.+.|..|+..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 44555 99999999999999999998654432 46899999999999999998863
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.12 E-value=0.96 Score=56.29 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=64.8
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEeccCCc
Q 001975 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV--AGKQIKLEASRPGG 438 (987)
Q Consensus 363 ~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I--~Gr~LkV~~A~pk~ 438 (987)
.+.++.|.+-..+-.-|..+|.+||.|.+++..++ -..|.|+|...+.|..|+.+|+|+++ -|-+.+|.+|+.-.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 45677788888999999999999999999886544 56799999999999999999999975 58889999998644
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.93 E-value=2.9 Score=46.84 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=52.1
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~ 343 (987)
..=|-|-++|+. .-..|..+|++||+|..... ...-.+-+|.|.+.-+|++||. .+|+.|.|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 455777788874 45678899999999999877 3666699999999999999995 7888887653
No 201
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=80.26 E-value=6.1 Score=34.74 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=40.6
Q ss_pred CcEEEEccCCCCCChHHHHHhhccc----CcEEEEEecccccceEEEEeCCHHHHHHHHHHc
Q 001975 277 SRTLFVRNINSNVEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKAL 334 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~f----G~I~sVkitgksrGfAFVeF~d~e~A~kAl~~L 334 (987)
..+|+|+++.. ++.++|+.+|..| ++..-=.+. -.-|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 46799999964 8999999999999 533211221 225779999999999999764
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.57 E-value=2.5 Score=44.71 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=45.5
Q ss_pred ChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHcc--CcccccccccccccCCC
Q 001975 290 EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 290 TEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Ln--g~~l~Gr~L~V~~a~pk 352 (987)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998887765 2445568899999999999999999 89999999999988544
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.07 E-value=5 Score=35.91 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHhhccCC-----EEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001975 372 SSVSTEELHQIFGIYGE-----IREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 372 ~svTeedLrelFs~fG~-----I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~A 434 (987)
..++..+|..++...+. |-.|++. ..|.||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677888887776544 4456765 4589998765 4889999999999999999999875
No 204
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=76.99 E-value=2.3 Score=46.68 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=51.6
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEE----EecccccceEEEEeCCHHHHHHHHHHccC
Q 001975 278 RTLFVRNINSNVEDSELKALFEQFGDIRTI----YTACKHRGFVMISYYDIRAARNAMKALQN 336 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sV----kitgksrGfAFVeF~d~e~A~kAl~~Lng 336 (987)
..|||.||..-+..+.|.+.|+.||+|... ...++..+-++|.|...-.|.+|++.+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 789999999999999999999999998753 23577788899999999999999987743
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=76.46 E-value=1.1 Score=52.54 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=64.3
Q ss_pred CCCCCcEEEEccCCCCC-ChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001975 273 GEHPSRTLFVRNINSNV-EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~v-TEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~p 351 (987)
.....+.|-+.-+|... |.++|...|.+||+|..|.+.. +--.|.|+|.+..+|-+|. ...+..|.++.|+|.|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 34455677777777775 5688999999999999998833 3567999999999998887 4899999999999999876
Q ss_pred CC
Q 001975 352 KD 353 (987)
Q Consensus 352 k~ 353 (987)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.80 E-value=2.3 Score=51.95 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=63.8
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001975 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
......++||+|+-..+.++-++.+...+|.|.+++... |||.+|..+..+.+|+..++-..++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 344567999999999999999999999999999876543 999999999999999999999999998887665
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=73.16 E-value=2.7 Score=39.37 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=45.0
Q ss_pred EEEEeCCHHHHHHHHHHccC-cccccccccccccCCCCCCC-----cccccccceeeecCCCCCCHHHHHHHhh
Q 001975 317 VMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIPKDNPS-----EKDANQGTLVVFNLDSSVSTEELHQIFG 384 (987)
Q Consensus 317 AFVeF~d~e~A~kAl~~Lng-~~l~Gr~L~V~~a~pk~~~~-----~~~~~~~tLfV~NLp~svTeedLrelFs 384 (987)
|.|+|.+..-|++.++.-.- ..+.+..+.|....-..... .-....++|.|.|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999963221 33555555554321111111 1234567999999999999999988643
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=72.52 E-value=24 Score=34.47 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=46.3
Q ss_pred ceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCC---cEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001975 364 TLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKH---NHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 364 tLfV~NLp~svTeedLrelFs~fG-~I~sVri~~~sk---G~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
.+.+...|.-++-++|..+.+.+- .|..+++.++.. --+.++|.+.++|..=.+.+||+.|..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444444555566677776666654 466788877643 358999999999999999999998753
No 209
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=69.49 E-value=7.1 Score=38.87 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=72.4
Q ss_pred HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCccc--ccccceeeec
Q 001975 292 SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKD--ANQGTLVVFN 369 (987)
Q Consensus 292 edLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~--~~~~tLfV~N 369 (987)
..|..+....|.+.-..+ ..++..+.|.+.+++.++++ .....+.+..+.++.-.|.....+.. ...--|.|.|
T Consensus 36 ~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~g 111 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYG 111 (153)
T ss_pred HHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhcc
Confidence 444445555555554444 67899999999999999985 45556778888887666554433222 1233578889
Q ss_pred CCCC-CCHHHHHHHhhccCCEEEEEEcCC
Q 001975 370 LDSS-VSTEELHQIFGIYGEIREIRDTQH 397 (987)
Q Consensus 370 Lp~s-vTeedLrelFs~fG~I~sVri~~~ 397 (987)
||.. .+++-|+++-+.+|++..+.....
T Consensus 112 lP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 112 LPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred CCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 9986 588889999999999999886543
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.31 E-value=14 Score=32.92 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=43.4
Q ss_pred CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 001975 373 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (987)
Q Consensus 373 svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV 431 (987)
.++-++++..+..|+-. .|+ .+..| -||-|.+.++|+++....+|..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DDRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ecCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56778999999998753 333 23344 489999999999999999999988877765
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.51 E-value=64 Score=36.57 Aligned_cols=146 Identities=18% Similarity=0.315 Sum_probs=92.2
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecc------------cccceEEEEeCCHHHHHHHHH----HccC-
Q 001975 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC------------KHRGFVMISYYDIRAARNAMK----ALQN- 336 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitg------------ksrGfAFVeF~d~e~A~kAl~----~Lng- 336 (987)
+-.+|.|...|+..+++-..+...|.+||+|++|++-. +......+.|-+.+.|-.... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999998621 224678999999888765432 2222
Q ss_pred -cccccccccccccCCCCCC----C--cc----------------cccccceeeecCCCCCCHHHH-HHHh---hccCC-
Q 001975 337 -KPLRRRKLDIHYSIPKDNP----S--EK----------------DANQGTLVVFNLDSSVSTEEL-HQIF---GIYGE- 388 (987)
Q Consensus 337 -~~l~Gr~L~V~~a~pk~~~----~--~~----------------~~~~~tLfV~NLp~svTeedL-relF---s~fG~- 388 (987)
+.+....|.+.|..-+-.. . +. ....+.|.|. +...+.++++ .+.+ ..-+.
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 3466677777665321100 0 00 1123345554 2234433333 2222 22232
Q ss_pred ---EEEEEEcCC-------CCcEEEEEECCHHHHHHHHHHhC
Q 001975 389 ---IREIRDTQH-------KHNHKFIEFYDIRAAETALRTLN 420 (987)
Q Consensus 389 ---I~sVri~~~-------skG~aFVeF~d~edA~kAL~~LN 420 (987)
|++|.++.. .+.||.+.|-+...|...+..+.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 455666421 46799999999999999998765
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.12 E-value=16 Score=43.31 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=55.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCC---cEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001975 362 QGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKH---NHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 362 ~~tLfV~NLp~svTeedLrelFs~fG-~I~sVri~~~sk---G~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
...|+|--+|..++-.||..++..|- .|..|+++++.- -.+.|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998764 477788877633 348999999999999999999998864
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=58.81 E-value=24 Score=31.42 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 288 NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 288 ~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
.++-++++..+..|+-..-+ . ...| -||.|.+.++|+++....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~-~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIR-D--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEE-e--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999854322 1 1233 489999999999999999999887766544
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=56.41 E-value=5.4 Score=50.08 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=60.3
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc--ccccccccccCCCC
Q 001975 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL--RRRKLDIHYSIPKD 353 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l--~Gr~L~V~~a~pk~ 353 (987)
+.++.|.+-..+-.-|..+|.+||.|.+++. -+.-..|.|+|...+.|..|+++|+|+++ -|.+.+|.++.+..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4556666677888999999999999999876 34556899999999999999999999875 57777887776544
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=53.83 E-value=9.4 Score=46.92 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=63.2
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001975 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 348 (987)
...+..++||+||-..+..+-++.+...||-|.+++... |+|..|.....+.+|+..+.-..++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 455678999999999999999999999999998886522 999999999999999999988889888877754
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.54 E-value=68 Score=39.33 Aligned_cols=127 Identities=16% Similarity=0.227 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEccCCCC-CChHHHHHhhccc----CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001975 272 YGEHPSRTLFVRNINSN-VEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~-vTEedLrelFs~f----G~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V 346 (987)
.....+++|-|-|+.|+ +...+|.-+|..| |.|.+|.+ ..+ +|- ...|....+.|-++.+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~I-YpS------eFG--------keRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKI-YPS------EFG--------KERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEe-chh------hhh--------HHHhhhhcccCChhhh
Confidence 34567899999999998 8889999988855 47888877 111 111 1223334444444333
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001975 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 347 ~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
- .+........ -+....++-.++-+.+|+. ..+ .--||.|+|.+++.|.+....++|.+|..
T Consensus 234 ~--~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq~-~rL-----kYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 234 F--KPVEEYKESE----------SDDEEEEDVDREKLRQYQL-NRL-----KYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred c--cccccCcccc----------cchhhhhhHHHHHHHHHHh-hhh-----eeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 2 1111111100 1111112223444445531 111 23479999999999999999999999875
Q ss_pred cEEEE
Q 001975 427 KQIKL 431 (987)
Q Consensus 427 r~LkV 431 (987)
.-..+
T Consensus 296 S~~~~ 300 (650)
T KOG2318|consen 296 SANKL 300 (650)
T ss_pred cccee
Confidence 43333
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=48.67 E-value=38 Score=30.31 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=34.6
Q ss_pred CCChHHHHHhhcccCc-----EEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001975 288 NVEDSELKALFEQFGD-----IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 288 ~vTEedLrelFs~fG~-----I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr~L~V~~a 349 (987)
.++..+|..++...+. |-.|++ ...|+||+-.. +.|+.+++.|++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4778888888877653 555665 45688988665 4788999999999999999998753
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=46.37 E-value=22 Score=37.60 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=52.5
Q ss_pred ceeeecCCCCC-----CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEEEeccCC
Q 001975 364 TLVVFNLDSSV-----STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKLEASRPG 437 (987)
Q Consensus 364 tLfV~NLp~sv-----TeedLrelFs~fG~I~sVri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr-~LkV~~A~pk 437 (987)
++.+.+++..+ .......+|.+|-+..-.++.+ +.+..-|-|.+++.|..|...+++..|.|+ .++.-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 56677776544 2233445666555444333332 355678899999999999999999999998 8888888875
Q ss_pred c
Q 001975 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
-
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.99 E-value=16 Score=40.67 Aligned_cols=63 Identities=27% Similarity=0.500 Sum_probs=43.8
Q ss_pred CcEEEEccCCCCC------------ChHHHHHhhcccCcEEEEEe----------cccc-----cce---------EEEE
Q 001975 277 SRTLFVRNINSNV------------EDSELKALFEQFGDIRTIYT----------ACKH-----RGF---------VMIS 320 (987)
Q Consensus 277 srtLfVgNLP~~v------------TEedLrelFs~fG~I~sVki----------tgks-----rGf---------AFVe 320 (987)
..|||+.+||-.+ +++-|+..|+.||.|+.|.+ +++. .|| |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 3678888888543 57889999999999998853 3443 333 3566
Q ss_pred eCCHHHHHHHHHHccCccc
Q 001975 321 YYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 321 F~d~e~A~kAl~~Lng~~l 339 (987)
|.....-..|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666677777777543
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.31 E-value=91 Score=29.13 Aligned_cols=55 Identities=7% Similarity=0.228 Sum_probs=41.6
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CEEEEEEcCCCCc--EEEEEECCHHHHHHHHHH
Q 001975 364 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALRT 418 (987)
Q Consensus 364 tLfV~NLp~svTeedLrelFs~-fG-~I~sVri~~~skG--~aFVeF~d~edA~kAL~~ 418 (987)
+-|+.-.+...+..+|++.++. || +|..|.......+ -|||++..-.+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 5677788999999999999997 55 4666665433344 599999998888876543
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.15 E-value=31 Score=36.48 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=54.6
Q ss_pred CcEEEEccCCCCCCh-----HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccc-cccccccC
Q 001975 277 SRTLFVRNINSNVED-----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDIHYSI 350 (987)
Q Consensus 277 srtLfVgNLP~~vTE-----edLrelFs~fG~I~sVkitgksrGfAFVeF~d~e~A~kAl~~Lng~~l~Gr-~L~V~~a~ 350 (987)
..++.+.+|+..+-. ....++|.+|-+....++ -++.+..-|.|.+++.|..|...++...|.|+ .++.-+++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 356777777776532 234467777776655544 45667788999999999999999999999988 67766665
Q ss_pred CC
Q 001975 351 PK 352 (987)
Q Consensus 351 pk 352 (987)
+.
T Consensus 89 ~~ 90 (193)
T KOG4019|consen 89 PG 90 (193)
T ss_pred CC
Confidence 44
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.85 E-value=1.1e+02 Score=28.09 Aligned_cols=54 Identities=9% Similarity=0.254 Sum_probs=40.1
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CEEEEEEcCCCCc--EEEEEECCHHHHHHHHH
Q 001975 364 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALR 417 (987)
Q Consensus 364 tLfV~NLp~svTeedLrelFs~-fG-~I~sVri~~~skG--~aFVeF~d~edA~kAL~ 417 (987)
.-|+..++...+..+|++.++. || +|..|.......+ -|||++..-..|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 5678889999999999999987 55 4666654433334 49999988887776544
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.25 E-value=1.3e+02 Score=35.49 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=45.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcCCCCcEEEEEECCHHHHHHHHH
Q 001975 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 361 ~~~tLfV~NLp~svTeedLrelFs~fG~I-~sVri~~~skG~aFVeF~d~edA~kAL~ 417 (987)
-...|-|.++|...-.+||...|+.|+.- ..|+++. ...+|--|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhh
Confidence 34689999999999999999999999753 3455443 4679999999999999998
Done!