Your job contains 1 sequence.
>001976
MPFEIMDHRSGSAPTHFSEEIRFPAERQIGFWKPNTMSDQQGSDGTVPMLGGKFVASSPM
ENFSPVGIPSVDWLELQQSTLARDKMKRLGIVGEEGAANLSENSWNSVNHHPKSWSNLAV
QPGINSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKLSGNEILSRQPLNAVASHHQPEE
PFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGD
DRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQ
FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDA
NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN
RSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMD
NGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQFGHYEPNLSLDEMKFGN
QHPSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVSSNGHLME
PTGGVFGSPRNGSYSLHGNPYVWNNSNSHQQHPSSPMVWPNSPSFLNGLHANRVAHMPGF
PRVPPLMLNATSPAHHHIGSAPAVNPSLWDRQHAYAGESPETSNFHLGSLGSGGFLGRSP
SHHVDIASQNILSHVGGNCMDMTKNVGMRSPQQICHLFPGRNPMMSMQTSFDSSNERMRN
LSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGT
YDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGK
AALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRSRLGKPRINGNEESQR
QGFTSVSGNGEESPNGSDSSGSSKGSD
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001976
(987 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2182885 - symbol:ML4 "MEI2-like 4" species:370... 2152 4.2e-230 2
TAIR|locus:2156166 - symbol:ML1 "MEI2-like protein 1" spe... 1902 5.4e-206 2
TAIR|locus:2013583 - symbol:ML5 "MEI2-like protein 5" spe... 930 1.2e-162 2
TAIR|locus:2117706 - symbol:ML3 "MEI2-like 3" species:370... 877 6.2e-152 3
TAIR|locus:2045605 - symbol:ML2 "MEI2-like 2" species:370... 823 1.3e-130 2
TAIR|locus:2090350 - symbol:TEL1 "terminal EAR1-like 1" s... 258 3.6e-50 4
POMBASE|SPAC27D7.03c - symbol:mei2 "RNA-binding protein i... 411 7.2e-44 2
TAIR|locus:2008530 - symbol:TEL2 "terminal EAR1-like 2" s... 283 7.8e-44 3
DICTYBASE|DDB_G0279255 - symbol:DDB_G0279255 species:4468... 254 3.8e-35 3
GENEDB_PFALCIPARUM|PFF1125c - symbol:PFF1125c "RNA-bindin... 311 7.4e-28 2
UNIPROTKB|C6KT70 - symbol:PFF1125c "RNA-binding protein m... 311 7.4e-28 2
DICTYBASE|DDB_G0276005 - symbol:DDB_G0276005 species:4468... 196 1.3e-23 3
DICTYBASE|DDB_G0268266 - symbol:DDB_G0268266 "RNA recogni... 272 3.9e-20 2
DICTYBASE|DDB_G0286611 - symbol:DDB_G0286611 "sulphate an... 245 1.7e-16 2
TAIR|locus:2029647 - symbol:MCT1 "AT1G37140" species:3702... 205 2.7e-15 1
ASPGD|ASPL0000003579 - symbol:AN6494 species:162425 "Emer... 200 3.7e-13 2
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 176 1.6e-09 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 175 2.1e-09 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 168 8.3e-09 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 168 1.2e-08 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 168 1.2e-08 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 170 1.5e-08 2
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 166 1.9e-08 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 166 1.9e-08 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 166 1.9e-08 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 166 2.0e-08 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 170 2.5e-08 2
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 170 2.5e-08 2
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 157 5.5e-08 1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 161 6.6e-08 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 160 8.8e-08 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 159 9.1e-08 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 159 9.2e-08 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 159 9.2e-08 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 155 9.6e-08 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 158 1.4e-07 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 152 2.1e-07 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 152 2.2e-07 1
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 148 2.5e-07 2
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 144 7.6e-07 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 144 7.9e-07 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 151 8.4e-07 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 142 8.4e-07 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 145 1.2e-06 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 97 1.3e-06 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 97 1.3e-06 2
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 130 1.3e-06 2
UNIPROTKB|Q0DKM4 - symbol:LOC_Os05g06280 "U1 small nuclea... 130 1.3e-06 2
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 143 1.7e-06 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 154 2.0e-06 2
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 117 2.6e-06 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 140 3.3e-06 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 141 3.3e-06 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 138 4.2e-06 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 142 4.3e-06 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 140 5.2e-06 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 142 6.0e-06 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 155 6.6e-06 2
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 100 7.7e-06 2
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 116 8.7e-06 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 116 8.7e-06 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 136 9.2e-06 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 130 1.2e-05 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 139 1.4e-05 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 140 1.5e-05 2
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 135 1.5e-05 1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 135 1.5e-05 1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 135 1.5e-05 1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 139 1.6e-05 1
ZFIN|ZDB-GENE-091116-1 - symbol:ptbp3 "polypyrimidine tra... 103 1.6e-05 2
ZFIN|ZDB-GENE-060616-2 - symbol:snrpb2 "small nuclear rib... 119 1.8e-05 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 143 1.8e-05 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 143 1.8e-05 2
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 136 1.9e-05 1
ZFIN|ZDB-GENE-040426-1811 - symbol:zgc:77262 "zgc:77262" ... 134 2.0e-05 2
TAIR|locus:2007417 - symbol:AT1G06960 species:3702 "Arabi... 110 2.1e-05 2
WB|WBGene00004386 - symbol:rnp-3 species:6239 "Caenorhabd... 113 2.1e-05 2
UNIPROTKB|Q21323 - symbol:rnp-3 "Protein RNP-3" species:6... 113 2.1e-05 2
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 112 2.3e-05 1
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 112 2.3e-05 1
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 130 2.4e-05 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 133 2.5e-05 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 133 2.5e-05 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 134 2.9e-05 2
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 132 3.0e-05 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 132 3.2e-05 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 123 3.4e-05 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 132 3.5e-05 1
UNIPROTKB|C9IZL7 - symbol:NONO "Non-POU domain-containing... 125 3.5e-05 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 136 3.7e-05 2
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 112 3.7e-05 2
UNIPROTKB|G4MVL2 - symbol:MGG_08898 "Differentiation regu... 136 4.0e-05 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 131 4.4e-05 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 98 4.4e-05 2
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 130 4.6e-05 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 109 4.9e-05 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 109 4.9e-05 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 130 5.7e-05 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 133 6.0e-05 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 108 6.2e-05 1
WARNING: Descriptions of 140 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2182885 [details] [associations]
symbol:ML4 "MEI2-like 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
[GO:0048507 "meristem development" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL163652 GO:GO:0003723
eggNOG:NOG262869 HOGENOM:HOG000030212 ProtClustDB:CLSN2687061
GO:GO:0048507 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AK226960 IPI:IPI00536095 PIR:T48500 RefSeq:NP_196346.1
UniGene:At.5054 ProteinModelPortal:Q9LYN7 SMR:Q9LYN7 PaxDb:Q9LYN7
PRIDE:Q9LYN7 EnsemblPlants:AT5G07290.1 GeneID:830620
KEGG:ath:AT5G07290 TAIR:At5g07290 InParanoid:Q9LYN7 OMA:HEDIRIT
PhylomeDB:Q9LYN7 Genevestigator:Q9LYN7 Uniprot:Q9LYN7
Length = 907
Score = 2152 (762.6 bits), Expect = 4.2e-230, Sum P(2) = 4.2e-230
Identities = 444/799 (55%), Positives = 555/799 (69%)
Query: 164 LSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDL 223
L R A S ++ EEP ESL+E+EAQTIGNLLPDEDDLF+ V + H +AN DDL
Sbjct: 105 LPRSDKLAFMSANREEEPSESLEEMEAQTIGNLLPDEDDLFAEVVGEGVHKSRANGGDDL 164
Query: 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVR 283
+D DLFSS GGMEL+GD +F+ D G SN S V EHP GE SR LFVR
Sbjct: 165 DDCDLFSSVGGMELDGD--VFSSVSQRDGKRG-SNV-----STVAEHPQGEILSRILFVR 216
Query: 284 NINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343
N++S++ED EL LF+QFGD+R ++TA K+RGF+M+SYYDIRAA+ A +AL + LR RK
Sbjct: 217 NVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRK 276
Query: 344 LDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKF 403
LDI YSIPK+NP E ++++G L V NLDSS+S EELH IF YGEIRE+R T H+++ +
Sbjct: 277 LDIRYSIPKENPKE-NSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVY 335
Query: 404 IEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDL 463
IEF+D+R A+ AL+ LN +VAG+Q+KL + P G F Q + + L ++ F++L
Sbjct: 336 IEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEGTS-FWPQFASDDGEGGLPKMAFNNL 394
Query: 464 SSGQMVSS--GVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIG 521
SS M G++ ST +D GSI+ +H++ SP + E HQ+ VP GLP ARV S
Sbjct: 395 SSAHMGRHFPGILASTSIDGGSIRGMHNSVGSPMNSFIERHQSLDVPIGLPPSARVISAS 454
Query: 522 KQFGHYEPNLSLDEMKFGNQH-PSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKI 580
K G E D K G Q P+ HPH P+Y D+ A+G PY S +T +++ S G K
Sbjct: 455 KPVGLQEFGNPFDNSKTGIQSMPNLHPH-FPDYLDNFASGSPYKSSTTFSEMVSD-GQKA 512
Query: 581 KDGLDSRHIRGVSSNGHLMEPTGGVFGSPRN-GSYSLHGNPYVWXXXXXXXXXXXXXMVW 639
+G ++RGV +G GGV GSP N GS+ GN +W M+W
Sbjct: 513 NEGFMMSNVRGVGVDGF----NGGVIGSPINQGSH--RGNLNLWSNSNSQQHNQSSGMMW 566
Query: 640 PNSPSFLNGLHANRVAHMPGFPRVPPLMLN-ATSPAHHHIGSAPAVNPSLWDRQHAYAGE 698
PNSPS +NG+ + R+ + F R PLM+N A+SP HHHIGSAP +N WDR+ AY E
Sbjct: 567 PNSPSRVNGVPSQRIPPVTAFSRASPLMVNMASSPVHHHIGSAPVLNSPFWDRRQAYVAE 626
Query: 699 SPETSNFHXXXXXXXXXXXXXPSHHVDIASQNILSHVGGNCMDM-TKNVGMRSPQQICHL 757
SPE+S FH PSH +D S + SHVGGN M+ +KN +RS +Q+ HL
Sbjct: 627 SPESSGFHLGSPGSMGFPGSSPSHPMDFGSHKVFSHVGGNRMEANSKNAVLRSSRQMPHL 686
Query: 758 FPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMI 817
F GR+PM+S+ SFD NER RNLS+RR+ESNS++A+KK YELD+DRILRG+DSRTTLMI
Sbjct: 687 FTGRSPMLSVSGSFDLPNERYRNLSHRRSESNSSNAEKKLYELDVDRILRGEDSRTTLMI 746
Query: 818 KNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFN 877
KNIPNKYTSKMLLAAIDE+C+GTYDF+YLPIDFKNKCNVGYAFIN+I+P I+PF++AFN
Sbjct: 747 KNIPNKYTSKMLLAAIDEYCKGTYDFLYLPIDFKNKCNVGYAFINLIEPENIVPFYKAFN 806
Query: 878 GKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPF 937
GKKWEKFNSEKVASLAY RIQGK+ALIAHFQNSSLMNEDKRCRPILFHT GPNAGD EPF
Sbjct: 807 GKKWEKFNSEKVASLAYGRIQGKSALIAHFQNSSLMNEDKRCRPILFHTAGPNAGDQEPF 866
Query: 938 PMGTNIRSRLGKPRINGNE 956
PMG+NIRSR GK R N E
Sbjct: 867 PMGSNIRSRPGKHRTNSIE 885
Score = 983 (351.1 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 226/508 (44%), Positives = 313/508 (61%)
Query: 93 GEEGAANLSENSWNSVNHHPKSWSNLA-VQPGINSLSGNRSGINGIQXXXXXXXXXXXDI 151
G + ++NL +SW S ++ S+L+ P + R+ N D+
Sbjct: 41 GVDRSSNLPTSSWTSDSYQLSQQSSLSGALPSF--IPNGRTTTNDTHWESSLFSSSLSDL 98
Query: 152 FTRKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDM 211
F+RK++L ++ L A S ++ EEP ESL+E+EAQTIGNLLPDEDDLF+ V +
Sbjct: 99 FSRKLRLPRSDKL------AFMSANREEEPSESLEEMEAQTIGNLLPDEDDLFAEVVGEG 152
Query: 212 GHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHP 271
H +AN DDL+D DLFSS GGMEL+GD +F+ D G SN S V EHP
Sbjct: 153 VHKSRANGGDDLDDCDLFSSVGGMELDGD--VFSSVSQRDGKRG-SNV-----STVAEHP 204
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 331
GE SR LFVRN++S++ED EL LF+QFGD+R ++TA K+RGF+M+SYYDIRAA+ A
Sbjct: 205 QGEILSRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAA 264
Query: 332 KALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391
+AL + LR RKLDI YSIPK+NP E ++++G L V NLDSS+S EELH IF YGEIRE
Sbjct: 265 RALHGRLLRGRKLDIRYSIPKENPKE-NSSEGALWVNNLDSSISNEELHGIFSSYGEIRE 323
Query: 392 IRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQD 451
+R T H+++ +IEF+D+R A+ AL+ LN +VAG+Q+KL + P G F Q +
Sbjct: 324 VRRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEGTS-FWPQFASDDG 382
Query: 452 DLNLCQIPFDDLSSGQMVSS--GVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPN 509
+ L ++ F++LSS M G++ ST +D GSI+ +H++ SP + E HQ+ VP
Sbjct: 383 EGGLPKMAFNNLSSAHMGRHFPGILASTSIDGGSIRGMHNSVGSPMNSFIERHQSLDVPI 442
Query: 510 GLPSLARVGSIGKQFGHYEPNLSLDEMKFGNQH-PSFHPHSLPEYHDSLANGLPYNSPST 568
GLP ARV S K G E D K G Q P+ HPH P+Y D+ A+G PY S +T
Sbjct: 443 GLPPSARVISASKPVGLQEFGNPFDNSKTGIQSMPNLHPH-FPDYLDNFASGSPYKSSTT 501
Query: 569 IADIASSVGTKIKDGLDSRHIRGVSSNG 596
+++ S G K +G ++RGV +G
Sbjct: 502 FSEMVSD-GQKANEGFMMSNVRGVGVDG 528
Score = 91 (37.1 bits), Expect = 4.2e-230, Sum P(2) = 4.2e-230
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 1 MPFEIMDHRSGSAPTHFSEEIRFPAERQIGFWKPNTMSD 39
MP +I++ R P+HF E+IR E+Q GF K N M +
Sbjct: 1 MPSDILEPRGVPTPSHFHEDIRITPEKQFGFMKNNPMPE 39
Score = 37 (18.1 bits), Expect = 2.1e-224, Sum P(2) = 2.1e-224
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 10 SGSAPTHFSEEIRFPAERQIGFWKPN 35
S S FS ++R P ++ F N
Sbjct: 92 SSSLSDLFSRKLRLPRSDKLAFMSAN 117
>TAIR|locus:2156166 [details] [associations]
symbol:ML1 "MEI2-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048507 "meristem development" evidence=IGI] [GO:0045836
"positive regulation of meiosis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:D86122
EMBL:AB022212 EMBL:AY062536 EMBL:BT008806 EMBL:AK316683
IPI:IPI00533512 RefSeq:NP_001032122.1 RefSeq:NP_568946.1
UniGene:At.340 ProteinModelPortal:Q8W4I9 SMR:Q8W4I9 IntAct:Q8W4I9
PaxDb:Q8W4I9 PRIDE:Q8W4I9 EnsemblPlants:AT5G61960.1
EnsemblPlants:AT5G61960.2 GeneID:836317 KEGG:ath:AT5G61960
TAIR:At5g61960 eggNOG:NOG262869 HOGENOM:HOG000030212
InParanoid:Q8W4I9 OMA:HEDIHIT PhylomeDB:Q8W4I9
ProtClustDB:CLSN2687061 Genevestigator:Q8W4I9 GO:GO:0048507
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 Uniprot:Q8W4I9
Length = 915
Score = 1902 (674.6 bits), Expect = 5.4e-206, Sum P(2) = 5.4e-206
Identities = 396/728 (54%), Positives = 497/728 (68%)
Query: 234 GMELEGDDRLFAV---QKNSDFVGGVSNQGVSAG--SVVGEHPYGEHPSRTLFVRNINSN 288
G EL+ D +V + + D VS++ G + VGE GE PSRTL V NI+SN
Sbjct: 168 GDELDEFDLFSSVGGMELDGDIFSSVSHRNGERGGNNSVGELNRGEIPSRTLLVGNISSN 227
Query: 289 VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348
VED ELK LFEQFGDI+ ++TACK+RGF+M+SY DIRAA+NA +ALQNK LR KLDI Y
Sbjct: 228 VEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRGTKLDIRY 287
Query: 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYD 408
SI K+NPS+KD ++G L+V NLDSS+S +EL+++ YGE++EIR T H ++ +IEF+D
Sbjct: 288 SISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFD 347
Query: 409 IRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDLSSGQM 468
+RAA AL LN +VAGK+++L + P G R + Q + L + + + SSG +
Sbjct: 348 VRAAAAALGGLNGLEVAGKKLQLVPTYPEGTR-YTSQCAANDTEGCLPKTSYSNTSSGHI 406
Query: 469 VSS--GVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQFGH 526
G+I+ST D GS++V+H++ SP + E H++ S+P G P A S K G
Sbjct: 407 GRHFPGMISSTSSDGGSMRVIHNSIGSPVNSFIERHRSLSIPIGFPPSANGISASKPVGL 466
Query: 527 YEPNLSLDEMKFGNQH-PSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLD 585
E D G Q P+ HPHS EY D+ ANG PY S S +++ S G+K +G
Sbjct: 467 QEHGHHFDNSNMGIQSMPNLHPHSFSEYVDNFANGSPYTS-SAFSEMVSD-GSKANEGFM 524
Query: 586 SRHIRGVSSNGHLMEPTGGVFGSPRNGSYSLHGNPYVWXXXXXXXXXXXXXMVWPNSPSF 645
++RGV G +GG GSP + S N +W M+WPNSPS
Sbjct: 525 IHNVRGVE--GF----SGGGIGSPMHQSSRRPIN--LWSNSNTQQQNPSSGMMWPNSPSH 576
Query: 646 LNGLHANRVAHMPGFPRVPPLMLN-ATSPAHHHIGSAPAVNPSLWDRQHAYAGESPETSN 704
+N + R + F R PP+M+N A+SP HHHIGSAP +N WDR+ AY ES E+S
Sbjct: 577 INSIPTQRPP-VTVFSRAPPIMVNMASSPVHHHIGSAPVLNSPFWDRRQAYVAESLESSG 635
Query: 705 FHXXXXXXXXXXXXXPSHHVDIASQNILSHVGGNCMDM-TKNVGMRSPQQICHLFPGRNP 763
FH PSH +DI S S VGGN MD+ ++N +RSPQQ+ HLFPGR+P
Sbjct: 636 FHIGSHGSMGIPGSSPSHPMDIGSHKTFS-VGGNRMDVNSQNAVLRSPQQLSHLFPGRSP 694
Query: 764 MMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNK 823
M SM SFDS NER RNLS+RR+ES+S++ADKK YELD+DRILRG+D RTTLMIKNIPNK
Sbjct: 695 MGSMPGSFDSPNERYRNLSHRRSESSSSNADKKLYELDVDRILRGEDRRTTLMIKNIPNK 754
Query: 824 YTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEK 883
YTSKMLL+AIDEHC+GTYDF+YLPIDFKNKCNVGYAFIN+I+P +I+PF +AFNGKKWEK
Sbjct: 755 YTSKMLLSAIDEHCKGTYDFLYLPIDFKNKCNVGYAFINLIEPEKIVPFFKAFNGKKWEK 814
Query: 884 FNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNI 943
FNSEKVA+L YARIQGK ALIAHFQNSSLMNEDKRCRPILFHTDGPNAGD EPFPMG+NI
Sbjct: 815 FNSEKVATLTYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFPMGSNI 874
Query: 944 RSRLGKPR 951
RSR GKPR
Sbjct: 875 RSRPGKPR 882
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 233/524 (44%), Positives = 327/524 (62%)
Query: 93 GEEGAANLSENSWNSVNHHPKSWSNLAVQPGINSLSGNRSGINGIQXXXXXXXXXXXDIF 152
G + +++ ++SW S ++ K S+ + S + R+ NG Q D+F
Sbjct: 43 GRDRLSSMPKSSWTSESYQLKPQSSFSGSHPSGSPNA-RNTTNGSQWESSLFSSSMSDLF 101
Query: 153 TRKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMG 212
+RK++L G+++LS N V +H + EEP ESL+EIEAQTIGNLLPDEDDLF+ VT ++G
Sbjct: 102 SRKLRLQGSDMLSTMSANTVVTHRE-EEPSESLEEIEAQTIGNLLPDEDDLFAEVTGEVG 160
Query: 213 HNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPY 272
+ANT D+L++FDLFSS GGMEL+GD +F+ + + G +N VGE
Sbjct: 161 RKSRANTGDELDEFDLFSSVGGMELDGD--IFSSVSHRNGERGGNNS-------VGELNR 211
Query: 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMK 332
GE PSRTL V NI+SNVED ELK LFEQFGDI+ ++TACK+RGF+M+SY DIRAA+NA +
Sbjct: 212 GEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAAR 271
Query: 333 ALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI 392
ALQNK LR KLDI YSI K+NPS+KD ++G L+V NLDSS+S +EL+++ YGE++EI
Sbjct: 272 ALQNKLLRGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEI 331
Query: 393 RDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDD 452
R T H ++ +IEF+D+RAA AL LN +VAGK+++L + P G R + Q +
Sbjct: 332 RRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPEGTR-YTSQCAANDTE 390
Query: 453 LNLCQIPFDDLSSGQMVSS--GVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNG 510
L + + + SSG + G+I+ST D GS++V+H++ SP + E H++ S+P G
Sbjct: 391 GCLPKTSYSNTSSGHIGRHFPGMISSTSSDGGSMRVIHNSIGSPVNSFIERHRSLSIPIG 450
Query: 511 LPSLARVGSIGKQFGHYEPNLSLDEMKFGNQH-PSFHPHSLPEYHDSLANGLPYNSPSTI 569
P A S K G E D G Q P+ HPHS EY D+ ANG PY S S
Sbjct: 451 FPPSANGISASKPVGLQEHGHHFDNSNMGIQSMPNLHPHSFSEYVDNFANGSPYTS-SAF 509
Query: 570 ADIASSVGTKIKDGLDSRHIRGVSSNGHLMEPTGGVFGSPRNGS 613
+++ S G+K +G ++RGV G +GG GSP + S
Sbjct: 510 SEMVSD-GSKANEGFMIHNVRGVE--GF----SGGGIGSPMHQS 546
Score = 113 (44.8 bits), Expect = 5.4e-206, Sum P(2) = 5.4e-206
Identities = 36/120 (30%), Positives = 57/120 (47%)
Query: 1 MPFEIMDHRSGSAPTHFSEEIRFPAERQIGFWKPNTMSDQQGS-DGTVPMLGGKFVASS- 58
MP +IM+ R S P+HF E+I +ERQ GF K + M + QG D M + + S
Sbjct: 1 MPSDIMEQRGVSTPSHFHEDIHITSERQFGFMKTDMMPENQGGRDRLSSMPKSSWTSESY 60
Query: 59 ---PMENFS---PVGIPSV-------DW-LELQQSTLARDKMKRLGIVGEEGAANLSENS 104
P +FS P G P+ W L S+++ ++L + G + + +S N+
Sbjct: 61 QLKPQSSFSGSHPSGSPNARNTTNGSQWESSLFSSSMSDLFSRKLRLQGSDMLSTMSANT 120
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 930 (332.4 bits), Expect = 1.2e-162, Sum P(2) = 1.2e-162
Identities = 206/388 (53%), Positives = 261/388 (67%)
Query: 183 ESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGD-- 240
ES + E+ +IGNLLPDE+DL +G+ DD+ + D +D+DLF SGGGMEL+ D
Sbjct: 68 ESADDFESHSIGNLLPDEEDLLTGMMDDL----DLGELPDADDYDLFGSGGGMELDADFR 123
Query: 241 DRLFAV---QKNSDFVGGVS----NQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSE 293
D L + + +GG + N AG+V GEHPYGEHPSRTLFVRNINSNVEDSE
Sbjct: 124 DNLSMSGPPRLSLSSLGGNAIPQFNIPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSE 183
Query: 294 LKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353
L ALFEQ+GDIRT+YT CKHRGFVMISYYDIR+AR AM++LQNKPLRRRKLDIH+SIPKD
Sbjct: 184 LTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKD 243
Query: 354 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAE 413
NPSEKD NQGTLVVFNLD S+S ++LH IFG +GEI+EIR+T HK +HKF+EFYD+R AE
Sbjct: 244 NPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAE 303
Query: 414 TALRTLNRSDVAGKQIKLEASRPGGARR-FMVQSEQ--EQDDLNLCQIPFDDLSSGQMVS 470
AL+ LNR ++AGK+IK+E SRPGGARR M+Q Q E DDL+ + +++ +
Sbjct: 304 AALKALNRCEIAGKRIKVEPSRPGGARRSLMLQLNQDLENDDLHYLPMIGSPMANSPPMQ 363
Query: 471 SGVITSTCMDNGSIQVLHSATRSPAIAL--TESHQTSSVPNGL----PS--LARVG--SI 520
++ ++ +Q + S RSP L T + S + + L PS LA +G I
Sbjct: 364 GNWPLNSPVEGSPLQSVLS--RSPVFGLSPTRNGHLSGLASALNSQGPSSKLAPIGRGQI 421
Query: 521 G----KQFGHYEPNLSLDEMKFGNQHPS 544
G +Q H +D GN PS
Sbjct: 422 GSNGFQQSSHLFQEPKMDNKYTGNLSPS 449
Score = 675 (242.7 bits), Expect = 1.2e-162, Sum P(2) = 1.2e-162
Identities = 165/358 (46%), Positives = 214/358 (59%)
Query: 584 LDSRHIRGVSSNGHLMEPTGGVFGSPRNGSYSLHGNPYVWXXXXXXXXXXXXXMVWPNSP 643
+D+++ +S +G L+ GG+ +L G+ ++W VW S
Sbjct: 438 MDNKYTGNLSPSGPLISNGGGI--------ETLSGSEFLWGSPNARSEPSSSS-VWSTS- 487
Query: 644 SFLNGLHANRVAHMPGFPRVPPLMLNATSPAHH-HIGSAPAVNPSLWDRQHAYAGESPET 702
S N L + RV FP N + HH H+GSAP+ P ++ + ES +
Sbjct: 488 STGNPLFSTRVDRSVPFPHQHQ---NQSRSHHHFHVGSAPSGVPL--EKHFGFVPESSKD 542
Query: 703 SNFHXXXXXXXXXXXXXP--SHHVDIASQNILSHVGGNCMDMTKNVGMRSPQQICHLF-- 758
+ F S +A+ I++ G + + M S + +F
Sbjct: 543 ALFMNTVGLQGMSGMGLNGGSFSSKMANNGIINS-GSMAENGFSSYRMMSSPRFSPMFLS 601
Query: 759 PGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHAD-KKQYELDIDRILRGDDSRTTLMI 817
G NP + FDS E R RR E+NSN + +KQ++LD+++IL G+DSRTTLMI
Sbjct: 602 SGLNPGR-FASGFDSLYENGRP---RRVENNSNQVESRKQFQLDLEKILNGEDSRTTLMI 657
Query: 818 KNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFN 877
KNIPNKYTSKMLLAAIDE +GTY+F+YLPIDFKNKCNVGYAFINM++P IIPF++AFN
Sbjct: 658 KNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKNKCNVGYAFINMLNPELIIPFYEAFN 717
Query: 878 GKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPE 935
GKKWEKFNSEKVASLAYARIQGK+ALIAHFQNSSLMNED RCRPI+F T PN +PE
Sbjct: 718 GKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMNEDMRCRPIIFDT--PN--NPE 771
Score = 48 (22.0 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 47 VPMLGGKFVASSPMENFSPVGIPSVDWLELQQSTLAR 83
+PM+G S PM+ P+ P V+ LQ S L+R
Sbjct: 349 LPMIGSPMANSPPMQGNWPLNSP-VEGSPLQ-SVLSR 383
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 877 (313.8 bits), Expect = 6.2e-152, Sum P(3) = 6.2e-152
Identities = 203/411 (49%), Positives = 264/411 (64%)
Query: 185 LKEIEAQTIGNLLPD-EDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGD--D 241
L + ++ IGN+LPD E++LFSG+ DD+ + T+DDLED+DLF SGGG+ELE D D
Sbjct: 63 LDDGDSHPIGNMLPDDEEELFSGLMDDLNLSSLPATLDDLEDYDLFGSGGGLELETDPYD 122
Query: 242 RL---FAVQKNSDF-VGGVSNQGV---SAGSVVGEHPYGEHPSRTLFVRNINSNVEDSEL 294
L F+ +D V V Q + GS+ GEHPYGEHPSRTLFVRNINSNVEDSEL
Sbjct: 123 SLNKGFSRMGFADSNVDNVMPQNIFQNGVGSIAGEHPYGEHPSRTLFVRNINSNVEDSEL 182
Query: 295 KALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354
+ALFEQ+G IRT+YTACK RGFVM+SY DIRA+R AM+ALQ K L++RKLDIH+SIPKDN
Sbjct: 183 QALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQGKLLKKRKLDIHFSIPKDN 242
Query: 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414
PSEKD NQGTLVVFNL SVS +L IFG+YGEI+EIR+T +K +HKF+EF+D+R+A+
Sbjct: 243 PSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADA 302
Query: 415 ALRTLNRSDVAGKQIKLEASRPGGARR-FMVQS--EQEQDD----LNLCQIPFDDLSSGQ 467
AL+ LNR+++AGK+IKLE SRPGGARR M+Q E EQDD LN + P G
Sbjct: 303 ALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYLNHVESPLASSPIGN 362
Query: 468 MVSSGVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSI--GKQFG 525
+S + D+ L S ++SP + P A V + G++F
Sbjct: 363 WRNSPI------DHP----LQSFSKSPIFGNLSPTKNIRYPEFSMKTASVNNDQEGRRFS 412
Query: 526 HYEPNLSLDEMKFGNQHPSFHPHSLPEYHDSLANGLPYNS-PSTIADIASS 575
H + S + N P+ S+++ NS PS + ++ S
Sbjct: 413 HLDHLFS--SSSYNNASHKASTFQQPQSFGSVSSFGSLNSHPSHVETLSGS 461
Score = 590 (212.7 bits), Expect = 6.2e-152, Sum P(3) = 6.2e-152
Identities = 118/191 (61%), Positives = 144/191 (75%)
Query: 745 NVGMRSPQQICHLFPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKK-QYELDID 803
N M S + LF G + + S ++ + + S ++ +SN N AD K Q++LD+
Sbjct: 544 NFKMLSAPRRSQLFTGNGSYLWPAATMVSIDDPLEDGSNQQFDSNGNQADIKIQFQLDLS 603
Query: 804 RILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINM 863
+I+RG+D RTTLMIKNIPNKYT MLLAAIDE GTYDF+YLPIDFKNKCNVGYAFINM
Sbjct: 604 KIMRGEDPRTTLMIKNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKNKCNVGYAFINM 663
Query: 864 IDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPIL 923
+ P+ I ++AFNGKKW+KFNSEKVASLAYARIQGKAALIAHFQNSSLMNED+RC+PI+
Sbjct: 664 VSPKFTIALYEAFNGKKWDKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDRRCQPIV 723
Query: 924 FHTDGPNAGDP 934
F DG + P
Sbjct: 724 F--DGSESKYP 732
Score = 52 (23.4 bits), Expect = 6.2e-152, Sum P(3) = 6.2e-152
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 638 VW--PNSPSF-LNGLHANRVAHMPGFPRVPPLMLNATSPAHHHIGSAPA 683
+W P+S ++ +N +NR H R P N + HHIGSAP+
Sbjct: 464 LWGSPSSSAWPVNPFSSNRENH-----RFPYSAQNGSLHQLHHIGSAPS 507
Score = 43 (20.2 bits), Expect = 5.9e-61, Sum P(3) = 5.9e-61
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 481 NGSIQVLHSATRSPAIALTESHQTSSV 507
NGS+ LH +P+ S +TSS+
Sbjct: 493 NGSLHQLHHIGSAPSGFFPRSPETSSM 519
Score = 37 (18.1 bits), Expect = 6.8e-62, Sum P(3) = 6.8e-62
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 52 GKFVASSPMENFSPVGIPSVDWLELQQSTLARDKMKRLGIVGEEGAANLSENSWNSVN 109
G + E FS G+ +D L L D ++ + G G L + ++S+N
Sbjct: 72 GNMLPDDEEELFS--GL--MDDLNLSSLPATLDDLEDYDLFGSGGGLELETDPYDSLN 125
>TAIR|locus:2045605 [details] [associations]
symbol:ML2 "MEI2-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 GO:GO:0045927 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HOGENOM:HOG000030212
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AF101056
EMBL:AC006580 EMBL:AC006931 EMBL:AF367316 EMBL:AY143940
IPI:IPI00546291 PIR:E84859 RefSeq:NP_565990.1 UniGene:At.25505
ProteinModelPortal:Q9SJG8 SMR:Q9SJG8 STRING:Q9SJG8 PaxDb:Q9SJG8
PRIDE:Q9SJG8 EnsemblPlants:AT2G42890.1 GeneID:818890
KEGG:ath:AT2G42890 TAIR:At2g42890 eggNOG:NOG266727
InParanoid:Q9ASS1 OMA:DANDHEQ PhylomeDB:Q9SJG8
ProtClustDB:CLSN2688901 Genevestigator:Q9SJG8 Uniprot:Q9SJG8
Length = 843
Score = 823 (294.8 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 215/471 (45%), Positives = 284/471 (60%)
Query: 183 ESLKEIEAQTIGNLLP-DEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMEL--EG 239
+SL+++E + LLP DE++L G+ D++ + +DDLE+ D+F +GGGMEL E
Sbjct: 93 DSLEDVEPDALEILLPEDENELLPGLIDELNFTGLPDELDDLEECDVFCTGGGMELDVES 152
Query: 240 DDRLFAVQKNSDFVG--GVSNQGV------SAGSVVGEHPYGEHPSRTLFVRNINSNVED 291
D AV + + G +N V +AG V EHP GEHPSRTLFVRNINS+VED
Sbjct: 153 QDN-HAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVED 211
Query: 292 SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351
SEL ALFE FG+IR++YTACK RGFVMISYYDIRAA AM+ALQN LR+R LDIH+SIP
Sbjct: 212 SELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIP 271
Query: 352 KDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRA 411
K+NPSEKD NQGTLV+FN+D++VS +EL Q+FG YGEIREIR+T ++ H+FIE+YD+R
Sbjct: 272 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRD 331
Query: 412 AETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSS 471
AETAL+ LNRS++ GK IKLE SRPGGARR V S+ + DL ++ + V S
Sbjct: 332 AETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQ--DLERTEVT----NFYNQVGS 385
Query: 472 GVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSV-P---NGLPSLARV-GSIGKQFGH 526
V S G+ + SP+ A T H V P + +P LA + + F
Sbjct: 386 HVANSP---PGNWPIGSPVKGSPSHAFTRPHGLGMVRPVNSDNMPGLASILPAHPSSFHG 442
Query: 527 YEPNLSLDE--MKFGNQ--------HP-SF-HPHSLPEYHDSLANGLPYNSPSTIADIAS 574
+ P +S D+ + NQ H S+ PHSLPE+ + G+ NS IA +S
Sbjct: 443 FSP-VSNDQGLLNHSNQTILNKGLMHNISYGQPHSLPEH---ITGGIS-NSMRFIAPHSS 497
Query: 575 SVGTKIKDGLDSRHIRGVSSNGHLMEP--TG-GVFGSPRNGSYSL-HGNPY 621
GT D R+ G S H+ P TG S +++ HG P+
Sbjct: 498 GFGTSS----DHRYRWG-SPPQHMNYPGYTGVSSSSSSTERPFTVRHGFPF 543
Score = 479 (173.7 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 114/263 (43%), Positives = 149/263 (56%)
Query: 676 HHIGSAPAVNPSLWDRQHAYAGESPETSNFHXXXXXXXXXXXXXPSHHVDIASQNILSHV 735
HH+GSAP+ + + + Y G SPE S H N+ +
Sbjct: 556 HHVGSAPS-SIHFNTQMNCYTG-SPEIP----LGFSDMGINRNYNSAH---GKANLGVSL 606
Query: 736 GGNC--MDMTKNVGMRSPQQICHLFPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHA 793
GN D T GM S + F G + S++ + R+ N + + +
Sbjct: 607 PGNSSEQDFT-GFGMSSMPTVP--FGGSRGLQSVRPEPFAEQGRIHN---HESHNQNQFI 660
Query: 794 DKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNK 853
D +Y +D+DRI GD+ RTTL+IKNIPNKYT KML+A IDE +G YDF+ LP DFKNK
Sbjct: 661 DGGRYHIDLDRIASGDEIRTTLIIKNIPNKYTYKMLVAEIDEKHKGDYDFLCLPTDFKNK 720
Query: 854 CNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLM 913
CN+G+AFINM+ P I+PF Q FNGK WEKFNS KVASLAYA IQGK+AL ++ Q S M
Sbjct: 721 CNMGHAFINMVSPLHIVPFQQTFNGKIWEKFNSGKVASLAYAEIQGKSALASYMQTPSSM 780
Query: 914 NEDKRCRP-ILFHTDGPNAGDPE 935
E K+ P + +H DG +A D E
Sbjct: 781 KEQKQLFPEVSYHDDGQDANDHE 803
>TAIR|locus:2090350 [details] [associations]
symbol:TEL1 "terminal EAR1-like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
IPI:IPI00518069 RefSeq:NP_189242.1 UniGene:At.53499
ProteinModelPortal:F4JBE2 SMR:F4JBE2 PRIDE:F4JBE2
EnsemblPlants:AT3G26120.1 GeneID:822211 KEGG:ath:AT3G26120
OMA:NSRKICQ ArrayExpress:F4JBE2 Uniprot:F4JBE2
Length = 615
Score = 258 (95.9 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 52/123 (42%), Positives = 71/123 (57%)
Query: 840 TYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQG 899
+YDF+YLP+DF NKCNVGY F+NM P F++AF+G++WE FNS K+ + YAR+QG
Sbjct: 455 SYDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVFNSHKICQITYARVQG 514
Query: 900 KAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRSRLGKPRINGNEESQ 959
L HF++S E + P++F P G P+ NI G R+N N Q
Sbjct: 515 LEDLKEHFKSSKFPCEAELYLPVVFSP--PRDGKQLTEPVSINITIN-GCTRLNHNHFEQ 571
Query: 960 RQG 962
G
Sbjct: 572 TVG 574
Score = 238 (88.8 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 45/103 (43%), Positives = 65/103 (63%)
Query: 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFY 407
+ +P + NQGTLV+FNLD VS+ L QIF +YG I+E+R+T +K + +F+EFY
Sbjct: 198 FVVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFY 257
Query: 408 DIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQ 450
D+R A A +N ++ GKQ+ +E SRPGG + S Q Q
Sbjct: 258 DVRDAARAFDRMNGKEIGGKQVVIEFSRPGGIKNRFRSSRQPQ 300
Score = 112 (44.5 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 810 DSRTTLMIKNIPNKYTSKMLLAAIDEHC 837
D RTTLMIKNIPNKY+ K+LL +D+HC
Sbjct: 405 DPRTTLMIKNIPNKYSQKLLLDMLDKHC 432
Score = 88 (36.0 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335
P+R+L + ++ +V +S ++ E +GD+R + G V + +YDIR A+ A++ +
Sbjct: 104 PTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVC 163
Query: 336 NKPLRRR 342
+ ++++
Sbjct: 164 GRHMQQQ 170
Score = 86 (35.3 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTAC--KHRGFVMISYYDIRAARNAMKALQN 336
TL + N++ V L+ +F+ +G I+ + KH+ FV +YD+R A A +
Sbjct: 214 TLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFV--EFYDVRDAARAFDRMNG 271
Query: 337 KPLRRRKLDIHYSIP 351
K + +++ I +S P
Sbjct: 272 KEIGGKQVVIEFSRP 286
Score = 66 (28.3 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
Identities = 18/76 (23%), Positives = 40/76 (52%)
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD 423
+L + ++ V+ + + +YG++R ++ + + FYDIR A+ A+R +
Sbjct: 107 SLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDIRDAKRAVR-----E 161
Query: 424 VAGKQIKLEASRPGGA 439
V G+ ++ +A GG+
Sbjct: 162 VCGRHMQQQAR--GGS 175
Score = 42 (19.8 bits), Expect = 5.1e-25, Sum P(3) = 5.1e-25
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 170 NAVASHHQPEEPFESLKE 187
N S QP+ PF+ L+E
Sbjct: 291 NRFRSSRQPQLPFQPLRE 308
Score = 39 (18.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 161 NEILSRQPLNAVASHHQPEEPFE 183
NE ++ + N SHHQP ++
Sbjct: 436 NEAITEEH-NKHESHHQPYSSYD 457
>POMBASE|SPAC27D7.03c [details] [associations]
symbol:mei2 "RNA-binding protein involved in meiosis
Mei2" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=IDA] [GO:0004860 "protein kinase inhibitor
activity" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007127 "meiosis I" evidence=TAS] [GO:0033620
"Mei2 nuclear dot" evidence=IDA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IDA] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC27D7.03c GO:GO:0005829
EMBL:CU329670 GO:GO:0006950 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0004860 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0007127
eggNOG:NOG262869 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:X07180 PIR:S00391 RefSeq:NP_594609.1 ProteinModelPortal:P08965
STRING:P08965 EnsemblFungi:SPAC27D7.03c.1 GeneID:2542080
KEGG:spo:SPAC27D7.03c OMA:IMETESP OrthoDB:EOG41ZJK1
NextBio:20803153 GermOnline:SPAC27D7.03c GO:GO:0033620
GO:GO:0034064 Uniprot:P08965
Length = 750
Score = 411 (149.7 bits), Expect = 7.2e-44, Sum P(2) = 7.2e-44
Identities = 85/168 (50%), Positives = 110/168 (65%)
Query: 780 NLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRG 839
NL R + HA + +D +I G D+RTT+MIKNIPNK+T +ML ID +G
Sbjct: 566 NLQ-RYTPTVEKHASDRN-SVDYAQIASGIDTRTTVMIKNIPNKFTQQMLRDYIDVTNKG 623
Query: 840 TYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQG 899
TYDF+YL IDF NKCNVGYAFIN I+P+ II F +A G +W F+SEK+ ++YA IQG
Sbjct: 624 TYDFLYLRIDFVNKCNVGYAFINFIEPQSIITFGKARVGTQWNVFHSEKICDISYANIQG 683
Query: 900 KAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRSRL 947
K LI F+NS +M+E+ RP +F + GPN G EPFP N R +L
Sbjct: 684 KDRLIEKFRNSCVMDENPAYRPKIFVSHGPNRGMEEPFPAPNNARRKL 731
Score = 131 (51.2 bits), Expect = 7.2e-44, Sum P(2) = 7.2e-44
Identities = 45/160 (28%), Positives = 80/160 (50%)
Query: 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHR-GFVMISYYDIRAARNAMKA 333
H SR LFV N+ V + L LF + GD++ I T+ G +++++DIR A A K+
Sbjct: 192 HASRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKS 251
Query: 334 LQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVF----------NLD--SSVSTEELHQ 381
L+++ +L +++ + + +K NQG + F N+ S +S +L
Sbjct: 252 LRSQRFFNDRL-LYFQFCQRSSIQKMINQGATIQFLDDNEGQLLLNMQGGSVLSILQLQS 310
Query: 382 IFGIYGEIREIRDTQHKHNHKFI-EFYDIRAAETALRTLN 420
I +G + ++ + ++ + I EFYD R A AL L+
Sbjct: 311 ILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELD 350
Score = 44 (20.5 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
Identities = 14/71 (19%), Positives = 33/71 (46%)
Query: 293 ELKALFEQFGDIRTIYTA-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI-HYSI 350
+L+++ + FG + + ++ ++ +YD R A A+ L + + L + +Y
Sbjct: 307 QLQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELDGRIIHNCCLQVAYYDA 366
Query: 351 PKDNPSEKDAN 361
D+ S A+
Sbjct: 367 MADSVSTSSAS 377
Score = 38 (18.4 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 247 QKNSDFVGGVSNQGVSAGSVVGE 269
Q+NSD + G++ Q S G+
Sbjct: 489 QRNSDLLNGINPQWSPFSSNTGK 511
>TAIR|locus:2008530 [details] [associations]
symbol:TEL2 "terminal EAR1-like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
EMBL:AC008113 HSSP:P09012 EMBL:DQ446408 IPI:IPI00539717
RefSeq:NP_176943.1 UniGene:At.52426 ProteinModelPortal:Q9FXE0
SMR:Q9FXE0 PRIDE:Q9FXE0 EnsemblPlants:AT1G67770.1 GeneID:843102
KEGG:ath:AT1G67770 TAIR:At1g67770 eggNOG:NOG320075
HOGENOM:HOG000090865 InParanoid:Q9FXE0 OMA:NEIRYRH PhylomeDB:Q9FXE0
ProtClustDB:CLSN2914477 Genevestigator:Q9FXE0 Uniprot:Q9FXE0
Length = 527
Score = 283 (104.7 bits), Expect = 7.8e-44, Sum P(3) = 7.8e-44
Identities = 60/144 (41%), Positives = 80/144 (55%)
Query: 810 DSRTTLMIKNIPNKYTSKMLLAAIDEHCR---------------GTYDFIYLPIDFKNKC 854
D RTT+MIKNIPNKYT K+LL +D HC+ +YDF+YLPIDF NK
Sbjct: 334 DGRTTVMIKNIPNKYTQKLLLKMLDTHCKDCNQSVIKEGNKTPMSSYDFVYLPIDFSNKS 393
Query: 855 NVGYAFINMIDPRQIIPFHQAFNGKKWEKFNS-EKVASLAYARIQGKAALIAHFQNSSLM 913
NVGY F+NM P + +++F+ + W F + K+ + YARIQG +L HF+N L
Sbjct: 394 NVGYGFVNMTSPEAVWRLYKSFHNQHWRDFTTTRKICEVTYARIQGLESLREHFKNVRLA 453
Query: 914 N-EDKRCRPILFHTDGPNAGDPEP 936
E P++F PEP
Sbjct: 454 GVEIDEYMPVVFSPPRDGRLSPEP 477
Score = 216 (81.1 bits), Expect = 7.8e-44, Sum P(3) = 7.8e-44
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
H+ P+ N + NQG+LV+ NL+ +VS+ L IF +YGE++++R+T K +F+EF
Sbjct: 167 HFVFPQLNAVPEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEF 226
Query: 407 YDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438
+D+R A ALR +N ++GK + ++ SRPGG
Sbjct: 227 FDVRDAAKALRVMNGKVISGKPMVIQFSRPGG 258
Score = 98 (39.6 bits), Expect = 6.6e-27, Sum P(2) = 6.6e-27
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TACKHRGFVMISYYDIRAARN 329
P G + +L + N+ V S L+ +F+ +G+++ + T CK R + ++D+R A
Sbjct: 177 PEGNNQG-SLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCK-REQRFVEFFDVRDAAK 234
Query: 330 AMKALQNKPLRRRKLDIHYSIP 351
A++ + K + + + I +S P
Sbjct: 235 ALRVMNGKVISGKPMVIQFSRP 256
Score = 86 (35.3 bits), Expect = 7.8e-44, Sum P(3) = 7.8e-44
Identities = 15/78 (19%), Positives = 41/78 (52%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNA 330
P P+R + + + + V ++ L+ E FG++R + H G V+ +Y++ ++ A
Sbjct: 73 PTSVTPTRAVMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIFHFYNLINSQRA 132
Query: 331 MKALQNKPLRRRKLDIHY 348
++ + +++++ H+
Sbjct: 133 FNEIRYRHMQQQEQQQHF 150
Score = 41 (19.5 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 8/55 (14%), Positives = 27/55 (49%)
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
+++ + ++V+ L + ++GE+R ++ + FY++ ++ A +
Sbjct: 82 VMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIFHFYNLINSQRAFNEI 136
>DICTYBASE|DDB_G0279255 [details] [associations]
symbol:DDB_G0279255 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0279255
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201
Pfam:PF04059 EMBL:AAFI02000030 RefSeq:XP_641754.1
ProteinModelPortal:Q54X23 EnsemblProtists:DDB0205680 GeneID:8621952
KEGG:ddi:DDB_G0279255 InParanoid:Q54X23 ProtClustDB:CLSZ2846744
Uniprot:Q54X23
Length = 1698
Score = 254 (94.5 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 57/182 (31%), Positives = 96/182 (52%)
Query: 761 RNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQYELDI------DRILRGDDSRTT 814
+N + Q + +N +RN + + + + + +D + I+ G D+RT+
Sbjct: 1516 KNQLQQQQPKKNQNNGTLRNSTNSKGKKELKEPKEPKEPVDPTCILIPENIISGVDTRTS 1575
Query: 815 LMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQ 874
LMI+NIPN+ T + L A IDE + TYDF+ +P+D K + GYAFIN D + FHQ
Sbjct: 1576 LMIRNIPNRLTQQTLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFINFKDHMNVYRFHQ 1635
Query: 875 AFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDP 934
F +W+ +N +K+ + YA IQG+ AL+ Q+ E + + + D +A +
Sbjct: 1636 KFFHTRWKNYNHDKICEINYAIIQGEEALL---QSIKKKQEKLQLKKGITSNDENSASEE 1692
Query: 935 EP 936
+P
Sbjct: 1693 KP 1694
Score = 228 (85.3 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 70/226 (30%), Positives = 119/226 (52%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDIRAARNAMK 332
E PSR LF+++I + + K+ E G I ++Y + K++G F++ISY DIR + A
Sbjct: 911 ESPSRYLFIKSIRG-INHNLFKSKIESIGQINSVYGSIKNKGGFLIISYLDIRHSIEAFN 969
Query: 333 ALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVV-FNLDSSVSTEELHQIFGIYGEIRE 391
LQ KL ++Y KD +K GTL+ F+ D + + + F +GEI++
Sbjct: 970 ELQKVDFGS-KLIVNYCFDKDQTVDK----GTLIATFSNDDQI--KNIVNDFSKFGEIKD 1022
Query: 392 IRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQD 451
IRD+ +K KF+EFY+I + A+ LN SD +IK+ S GG+ + +++ +
Sbjct: 1023 IRDSPNKPLQKFVEFYNINSTLKAINNLN-SD----KIKVAFSHHGGSSKDLIKLNSTEA 1077
Query: 452 DLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIA 497
N+ F+ + ++ T+T S QV +S T+SP+ +
Sbjct: 1078 -FNVTTHYFNGT---YLPTTTTTTATASTPTSTQV-NSITKSPSFS 1118
Score = 54 (24.1 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 308 YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVV 367
Y+ G ++ ++I RN+ NK L HY P S N V
Sbjct: 272 YSPKNSNGSGALNNHEIEQKRNSYDGFGNKTLFSSSTSTHYQSPSSLSSAGSLNSPKSQV 331
Query: 368 FNLDSS 373
L SS
Sbjct: 332 SRLSSS 337
Score = 48 (22.0 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 652 NRVAHMPGFPRVPPLMLNATSP 673
N + P F RVP +L TSP
Sbjct: 1109 NSITKSPSFSRVPAPLLIKTSP 1130
Score = 45 (20.9 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 12/68 (17%), Positives = 28/68 (41%)
Query: 229 FSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRN--IN 286
FSS D ++ + KN++ + N ++ + + + ++N IN
Sbjct: 1247 FSSSSCSSSSNDTKISEIDKNNNNINNSDNNNINNNNNNSNNNNNNENTNNSEIKNNLIN 1306
Query: 287 SNVEDSEL 294
N ++E+
Sbjct: 1307 DNFGENEI 1314
Score = 42 (19.8 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 759 PGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNH 792
P +N Q + +++N N + N +N+N+
Sbjct: 1414 PHQNQFKKYQPTCNNNNNNNNNNNNNNNNNNNNN 1447
Score = 39 (18.8 bits), Expect = 6.7e-13, Sum P(3) = 6.7e-13
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 774 SNERMRNLSYRRNESNSNHADKKQYELDIDRILRGDD 810
+N N++ N SN+N+ ++ +I L D+
Sbjct: 1272 NNSDNNNINNNNNNSNNNNNNENTNNSEIKNNLINDN 1308
Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 772 DSSNERMRNLSYRRNESNSNHADKKQYE 799
+++N N + N +N+N+ ++Q +
Sbjct: 1441 NNNNNNNNNNNNNNNNNNNNNQQQQQQQ 1468
Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 772 DSSNERMRNLSYRRNESNSNHADKKQYE 799
+++N N + N +N+N+ +++Q +
Sbjct: 1439 NNNNNNNNNNNNNNNNNNNNNNNQQQQQ 1466
>GENEDB_PFALCIPARUM|PFF1125c [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0045836 "positive
regulation of meiosis" evidence=ISS] InterPro:IPR012677
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836
InterPro:IPR007201 Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 311 (114.5 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 66/138 (47%), Positives = 87/138 (63%)
Query: 813 TTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPF 872
TT+M++NIPNKYT ML+ ++EH +G YDF YLPIDF+NKCNVGYAFIN I P F
Sbjct: 290 TTVMLRNIPNKYTQNMLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELF 349
Query: 873 HQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNED-KRCRPILFHTDGPNA 931
+ FN K F S KV S+ + R+QG A I H++NS++M + +PILF +G
Sbjct: 350 IKFFNNYKLNAFKSNKVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILFQ-NGITV 408
Query: 932 GDPE---PFPMGTNIRSR 946
PE P P +RS+
Sbjct: 409 SWPESDGPLP-SIKLRSQ 425
Score = 51 (23.0 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 783 YRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTS 826
Y + N+N K +ID+IL+ + L I N+ NK T+
Sbjct: 29 YILHNINNNEGPLK----NIDKILKEEKDNINLKINNVNNKETN 68
>UNIPROTKB|C6KT70 [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003723
"RNA binding" evidence=ISS] [GO:0045836 "positive regulation of
meiosis" evidence=ISS] InterPro:IPR012677 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836 InterPro:IPR007201
Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 311 (114.5 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 66/138 (47%), Positives = 87/138 (63%)
Query: 813 TTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPF 872
TT+M++NIPNKYT ML+ ++EH +G YDF YLPIDF+NKCNVGYAFIN I P F
Sbjct: 290 TTVMLRNIPNKYTQNMLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELF 349
Query: 873 HQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNED-KRCRPILFHTDGPNA 931
+ FN K F S KV S+ + R+QG A I H++NS++M + +PILF +G
Sbjct: 350 IKFFNNYKLNAFKSNKVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILFQ-NGITV 408
Query: 932 GDPE---PFPMGTNIRSR 946
PE P P +RS+
Sbjct: 409 SWPESDGPLP-SIKLRSQ 425
Score = 51 (23.0 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 783 YRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTS 826
Y + N+N K +ID+IL+ + L I N+ NK T+
Sbjct: 29 YILHNINNNEGPLK----NIDKILKEEKDNINLKINNVNNKETN 68
>DICTYBASE|DDB_G0276005 [details] [associations]
symbol:DDB_G0276005 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0276005
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_643375.1 ProteinModelPortal:Q552K7
EnsemblProtists:DDB0217746 GeneID:8620259 KEGG:ddi:DDB_G0276005
eggNOG:NOG269978 InParanoid:Q552K7 OMA:NNMNHPN
ProtClustDB:CLSZ2846869 Uniprot:Q552K7
Length = 1984
Score = 196 (74.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 60/184 (32%), Positives = 93/184 (50%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG--FVMISYYDIR--- 325
P+G SR L ++ N+N++ L F++ G+I+++Y G V+ISY+DIR
Sbjct: 1411 PHGGKASRNLLIKT-NANIDLRNLICKFKEHGEIKSVYQNITRSGTMHVVISYFDIRNSV 1469
Query: 326 -----------AARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV 374
+ N+ N + +L I+Y + KD P + GTLV+FN D+
Sbjct: 1470 FALSANCNSSSCSNNSSTNKNNNDIINDRLSIYYCLNKD-PID----HGTLVLFNFDAVF 1524
Query: 375 STEE-LHQIFGI---YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430
ST H + +G+IREIR+ K+ KFIEFYDIR A A+ L + GK++
Sbjct: 1525 STNSNTHMLTSALNQFGQIREIREDL-KNKLKFIEFYDIRDAIAAVNALKKQVFFGKKLL 1583
Query: 431 LEAS 434
+ S
Sbjct: 1584 VRLS 1587
Score = 182 (69.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 53/186 (28%), Positives = 88/186 (47%)
Query: 744 KNVGMRSPQQICHLFPGR--NPMMSMQTSFDSSNERMRNLSY--------RRNESNSNHA 793
KN G+ P + L+ +P S + S D ++ + S + S S
Sbjct: 1713 KNFGI-PPLNVSQLYNNSKSSPTQSPRYSHDQQQQQQQQHSSQPTSPHVSKSGSSGSFEG 1771
Query: 794 DKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNK 853
+ +++D I G + +TT+MIKNIP K+T L +H YD++Y+P D K
Sbjct: 1772 TDDSHIINLDDIRSGVNQKTTVMIKNIPYKFTHLNLDTMFKKH-NLAYDYLYMPTDPITK 1830
Query: 854 CNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQG---KAALIAHFQNS 910
+ GY F+N ++ + II +N KK N K + YAR+QG +A +A+ N+
Sbjct: 1831 AHYGYTFVNFVNYQDIIQLCSLYNNKKLG--NHPKFCEITYARLQGFPQTSATVANNNNN 1888
Query: 911 SLMNED 916
+ N +
Sbjct: 1889 NNNNNN 1894
Score = 95 (38.5 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 41/133 (30%), Positives = 63/133 (47%)
Query: 247 QKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLF----VRNINSNVEDSELKALFEQFG 302
+ N+D + N +S + + P +H + LF V + NSN L + QFG
Sbjct: 1489 KNNNDII----NDRLSIYYCLNKDPI-DHGTLVLFNFDAVFSTNSNTH--MLTSALNQFG 1541
Query: 303 DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQ 362
IR I K++ I +YDIR A A+ AL+ + +KL + S+ D+ S+K N
Sbjct: 1542 QIREIREDLKNK-LKFIEFYDIRDAIAAVNALKKQVFFGKKLLVRLSV-LDH-SKKSQNN 1598
Query: 363 GTLVVFNLDSSVS 375
T VFN+ S
Sbjct: 1599 TT--VFNVSDQFS 1609
Score = 45 (20.9 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 99 NLSENSWNSVNHHPKSWSNLAVQPGINSLSGNRSGING 136
N ++NS N+ N + S SN N+ + N + NG
Sbjct: 380 NTNKNSNNNSNSNSNSNSNSNSNSNSNNNNNNNNNNNG 417
Score = 43 (20.2 bits), Expect = 5.9e-08, Sum P(3) = 5.9e-08
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 156 MKLSGNEILSRQPLNAVASHHQPEE 180
+K++ N+ QPL++ + H Q ++
Sbjct: 1622 IKINDNDDFENQPLSSRSLHQQQQQ 1646
Score = 40 (19.1 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 99 NLSENSWNSVNHHPKSWSNLAVQPGINS 126
N + N+ + NH S++NL + G NS
Sbjct: 103 NNNNNNNRNYNHVGVSYNNLNLTNGNNS 130
Score = 40 (19.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 19/92 (20%), Positives = 35/92 (38%)
Query: 538 FGNQHPSFHP-HSLPEYHDS--LANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVSS 594
+ N H P H ++DS + N ++ S +++ G+ + S +
Sbjct: 602 YNNHHRYKEPSHEAQVFNDSESIKNSFNNSNHSNNGSFSNNNGS-FSNNNGSFNSFNNGQ 660
Query: 595 NGHLMEPTGGVFGS-----PRNGSYSLHGNPY 621
N + G F S NGS++ H N +
Sbjct: 661 NNSINNNNNGSFNSYNSNRNNNGSFNSHSNSF 692
Score = 39 (18.8 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 96 GAANLSENSWNSVNHHPKSWSNLAVQPGINSLSGNRSGING 136
G+ + + S+NS N+ + N NS + NR+ NG
Sbjct: 644 GSFSNNNGSFNSFNNGQNNSINNNNNGSFNSYNSNRNN-NG 683
Score = 39 (18.8 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 770 SFDSSNERMRNLSYRRNESNSNH 792
SF S+N N + N +N+N+
Sbjct: 1935 SFGSNNANSYNNNNNNNNNNNNN 1957
Score = 38 (18.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 608 SPRNGSYSLHGN 619
S NGSY+ H N
Sbjct: 702 SNNNGSYNSHSN 713
Score = 37 (18.1 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 93 GEEGAANLSENSWNSVNHHPKSWSN 117
G + N + N+ S N H S++N
Sbjct: 670 GSFNSYNSNRNNNGSFNSHSNSFNN 694
Score = 37 (18.1 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 99 NLSENSWNSVNHHPKSWSNLAVQPGINSLSGNRSG 133
N + N N+ ++ S++N + NS GN G
Sbjct: 454 NNNNNHSNANGNNSNSYNNNSNSNNSNSNIGNSGG 488
Score = 37 (18.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 760 GRNPMMSMQTSFDSSNERMRNLSYRRNESNSNH 792
G N S + +++N N + N +N+N+
Sbjct: 1937 GSNNANSYNNNNNNNNNNNNNNNNNNNNNNNNN 1969
Score = 37 (18.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 758 FPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNH 792
FP + ++ + +++N N + N +N+N+
Sbjct: 1875 FPQTSATVANNNNNNNNNNNNNNNNNNNNNNNNNN 1909
>DICTYBASE|DDB_G0268266 [details] [associations]
symbol:DDB_G0268266 "RNA recognition motif-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030587
"sorocarp development" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0268266 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0003676 GO:GO:0030587
eggNOG:NOG321849 RefSeq:XP_647083.1 ProteinModelPortal:Q55GV1
EnsemblProtists:DDB0202068 GeneID:8615887 KEGG:ddi:DDB_G0268266
InParanoid:Q55GV1 OMA:FSIPKEE Uniprot:Q55GV1
Length = 689
Score = 272 (100.8 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 61/173 (35%), Positives = 96/173 (55%)
Query: 264 GSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYD 323
G V+GE E RTLFVRN+ ++++ ++ A+F + G+I+ ++ + RG ISYYD
Sbjct: 175 GKVIGEK---EKLGRTLFVRNVAYSIKEVDIPAIFAKIGEIKKTFSLLESRGIAFISYYD 231
Query: 324 IRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383
+R A A +Q L R +DIH+SIPK+ +D N G + V N D V E+ F
Sbjct: 232 LRDAERAKNEIQGTTLDGRSIDIHFSIPKEESGLED-NAGFIHVKNRD--VPLNEVRIFF 288
Query: 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436
YG+I+++ T+ + +EFYD+RA E AL N + + + L+ P
Sbjct: 289 SSYGDIKDV--TEFNRDQVLVEFYDLRACEKALAEANGVKLGDQTLDLDYYTP 339
Score = 51 (23.0 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 762 NPMMSMQTSFDSSNERMRNLSYRRNESNSNH 792
N M +M + +++N M N + N +NSN+
Sbjct: 579 NNMNNMNKNMNNNNNNMNNNNNNNNMNNSNN 609
Score = 49 (22.3 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 779 RNLSYRR------NESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPN 822
RN YRR N SNSN+ + ++Y D+ + + + + + N N
Sbjct: 429 RNPDYRRRDDNNYNNSNSNNNNSRKYTDSGDKSYKSNQNNYSNSVNNYNN 478
Score = 42 (19.8 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 766 SMQTSFDSSNERMRNLSYRRNESNSNH 792
+M + ++ N+ M N + N +N+N+
Sbjct: 576 NMNNNMNNMNKNMNNNNNNMNNNNNNN 602
Score = 38 (18.4 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 772 DSSNERMRNLSYRRNESNSN 791
++ N M N++ N +N+N
Sbjct: 575 NNMNNNMNNMNKNMNNNNNN 594
Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 760 GRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQY 798
G S Q ++ +S N + N +N+N+ + +
Sbjct: 458 GDKSYKSNQNNYSNSVNNYNNNNNNNNSNNNNNNNNNSH 496
Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 11/63 (17%), Positives = 27/63 (42%)
Query: 766 SMQTSFDSSNERMRNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYT 825
+M ++F+S+N N S + +N + +++ + ++ M N+ N
Sbjct: 516 NMNSNFNSNNNNNNNNSGSNSNTNGGWNNNNSNSNNMNNMNMNNNMNNN-MNNNMNNNMN 574
Query: 826 SKM 828
+ M
Sbjct: 575 NNM 577
>DICTYBASE|DDB_G0286611 [details] [associations]
symbol:DDB_G0286611 "sulphate anion transporter
family protein" species:44689 "Dictyostelium discoideum"
[GO:0055085 "transmembrane transport" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0015116 "sulfate transmembrane transporter
activity" evidence=IEA] [GO:0008272 "sulfate transport"
evidence=IEA] [GO:0008271 "secondary active sulfate transmembrane
transporter activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001902
InterPro:IPR011547 InterPro:IPR012677 InterPro:IPR018045
Pfam:PF00916 PROSITE:PS01130 SMART:SM00360 dictyBase:DDB_G0286611
GO:GO:0016021 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000089 GO:GO:0008272 InterPro:IPR007201 Pfam:PF04059
GO:GO:0008271 Gene3D:3.30.750.24 InterPro:IPR002645 SUPFAM:SSF52091
PROSITE:PS50801 Pfam:PF01740 eggNOG:COG0659 TIGRFAMs:TIGR00815
RefSeq:XP_001733021.1 ProteinModelPortal:B0G157
EnsemblProtists:DDB0237857 GeneID:8625706 KEGG:ddi:DDB_G0286611
OMA:ILFRIEN ProtClustDB:CLSZ2846953 Uniprot:B0G157
Length = 1221
Score = 245 (91.3 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 46/102 (45%), Positives = 67/102 (65%)
Query: 803 DRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFIN 862
+ I+ G D+RT+LMI+NIPN+ T + L A IDE + TYDF+ +P+D K + GYAFIN
Sbjct: 1087 ENIISGVDTRTSLMIRNIPNRLTQQNLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFIN 1146
Query: 863 MIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALI 904
D + FHQ F +W+ +N +K+ + YA IQG+ AL+
Sbjct: 1147 FKDHMNVYRFHQKFFHTRWKNYNHDKICEINYAIIQGEEALL 1188
Score = 52 (23.4 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 322 YDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQ 381
Y++ N + Q L RR+ ++ I + +K+ N GTL N +S +EL +
Sbjct: 1016 YEVSILENEQELEQ---LERRRKELESEIQQQKAQQKNQNNGTLR--NSTNSKGKKELKE 1070
Score = 42 (19.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 769 TSFDSSNERMRNLSYRRNESNSNHADKKQYE 799
++ +++N M N N +N+N+ + Q +
Sbjct: 965 SNINNNNNNMNNSINNNNNNNNNNNNNNQQQ 995
Score = 38 (18.4 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 762 NPMMSMQTSFDSSNERMRNLSYRRNESNSNH 792
N + + + S ++ N+S N +N+N+
Sbjct: 785 NKIKTTNLFLNRSYNQLNNISNNNNNNNNNN 815
Score = 37 (18.1 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 756 HLFPGR--NPMMSMQTSFDSSNERMRNLSYRRNESNSNH 792
+LF R N + ++ + +++N N + N +N+N+
Sbjct: 791 NLFLNRSYNQLNNISNNNNNNNNNNNNNNNNNNNNNNNN 829
>TAIR|locus:2029647 [details] [associations]
symbol:MCT1 "AT1G37140" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR012677 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR007201 Pfam:PF04059 EMBL:DQ056481 IPI:IPI00521142
RefSeq:NP_174902.1 UniGene:At.51989 ProteinModelPortal:Q4PT05
SMR:Q4PT05 EnsemblPlants:AT1G37140.1 GeneID:840631
KEGG:ath:AT1G37140 TAIR:At1g37140 HOGENOM:HOG000124801
InParanoid:Q4PT05 OMA:ICEITVA PhylomeDB:Q4PT05
ProtClustDB:CLSN2682263 ArrayExpress:Q4PT05 Genevestigator:Q4PT05
Uniprot:Q4PT05
Length = 233
Score = 205 (77.2 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 41/105 (39%), Positives = 58/105 (55%)
Query: 812 RTTLMIKNIPNKYTSKMLLAAIDEHCR-----GTYDFIYLPIDFKNKCNVGYAFINMIDP 866
RT++M+KNIPN LL +D HCR +YDF+YLP+DF + N+GYAF+N
Sbjct: 83 RTSVMVKNIPNCLGRMDLLRILDNHCRKHNEKSSYDFLYLPMDFGKRANLGYAFVNFTSS 142
Query: 867 RQIIPFHQAFNGKKWEKFN-SEKVASLAYARIQGKAALIAHFQNS 910
F + F W+ +K+ + A+ QGK L HF+NS
Sbjct: 143 LAAERFRREFENFSWDNIGFRKKICEITVAKYQGKEELTRHFRNS 187
>ASPGD|ASPL0000003579 [details] [associations]
symbol:AN6494 species:162425 "Emericella nidulans"
[GO:0045836 "positive regulation of meiosis" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IEA] [GO:0033620 "Mei2 nuclear dot" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004860 "protein kinase
inhibitor activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001301 InterPro:IPR007201 Pfam:PF04059
EnsemblFungi:CADANIAT00007260 HOGENOM:HOG000200448 OMA:VDETSHG
Uniprot:C8V0B7
Length = 669
Score = 200 (75.5 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 53/146 (36%), Positives = 74/146 (50%)
Query: 797 QYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDF---KNK 853
Q +D++RI G D RTT+M++NIPNK ML A +DE G YDF+YL I +
Sbjct: 438 QNAVDVERIRLGLDVRTTIMLRNIPNKIDQTMLKAIVDETSHGKYDFMYLRIVLAMLSST 497
Query: 854 CNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLM 913
+ Y ++ + + Q +G S+K QGK L+ F+NSS+M
Sbjct: 498 SKIVYTYVI----QSLSKHEQGAHGTASTAIRSQK------CHTQGKDCLVQKFRNSSVM 547
Query: 914 NEDKRCRPILFHTD-GPNAGDPEPFP 938
E RP +FHT GP AG + FP
Sbjct: 548 LEHPSFRPKIFHTGTGPLAGKEDRFP 573
Score = 59 (25.8 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 375 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
S E L FG + +Q + IE+++ R AE + TLN + V +++
Sbjct: 285 SLETLAMTFGDIQAFTPLLSSQENISEFHIEYFNTRDAENVMTTLNGTSVDDCVVEVSFF 344
Query: 435 RP 436
+P
Sbjct: 345 KP 346
Score = 48 (22.0 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 285 INSNVEDSELKALFEQFGDIRT---IYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR 341
+N + L+ L FGDI+ + ++ ++ I Y++ R A N M L +
Sbjct: 277 LNQHTVARSLETLAMTFGDIQAFTPLLSSQENISEFHIEYFNTRDAENVMTTLNGTSVDD 336
Query: 342 RKLDIHYSIPKDNPSE 357
+++ + P D SE
Sbjct: 337 CVVEVSFFKP-DVESE 351
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 176 (67.0 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 49/175 (28%), Positives = 84/175 (48%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IYTACKHRGFVMISYYDIRAARNAMK 332
E +RTLFV+N+ ++ +L+ +F+Q DIR + RG I + A A++
Sbjct: 376 ERDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALE 435
Query: 333 ALQNKPLRRRKLDIHYSIPKDNPSEKDANQGT--LVVFNLDSSVSTEELHQIFGIYGEIR 390
Q ++ R + + ++ K + A + LVV NL S S + L +F IR
Sbjct: 436 EAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAVSIR 495
Query: 391 EIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS-----RPGGAR 440
++ + F+EF ++ ++ AL N +D+ G+ I+LE S R GG R
Sbjct: 496 IPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGGGR 550
Score = 145 (56.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 70/305 (22%), Positives = 132/305 (43%)
Query: 154 RKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIG-NLLP---DEDDL---FSG 206
+ ++L+G ++L QP+ + + E E+ KE +A+T+ LP +DDL F
Sbjct: 345 KALELNGKKLLG-QPVKLDKARSK-ENSQENKKERDARTLFVKNLPYSITQDDLREIFDQ 402
Query: 207 VTD---DMGHNFQANTVDDLE-DFDLFSSGGGMELEGDDRLFAVQKNS---DFVGGVSNQ 259
D MG+ + + +E + + E +G D VQ S DF G S Q
Sbjct: 403 AVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSD----VQGRSIIVDFTGDKSRQ 458
Query: 260 GVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMI 319
G G+ P S+ L V N+ + + L+++FE+ IR + +G+ +
Sbjct: 459 G-GRGA-----PSA---SKVLVVNNLAFSASEDSLQSVFEKAVSIRIPQNNGRPKGYAFV 509
Query: 320 SYYDIRAARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG---TLVVFNLDSSVS 375
+ ++ ++ A++ N + R + + YS ++ N G TL V L +
Sbjct: 510 EFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTT 569
Query: 376 TEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433
+ L F I I RDT F++F + + + A ++ ++ G ++ L+
Sbjct: 570 DQTLKDSFDGAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDY 629
Query: 434 SRPGG 438
++P G
Sbjct: 630 AKPKG 634
Score = 134 (52.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 49/170 (28%), Positives = 79/170 (46%)
Query: 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTA-CKHRGFVMISYYDIRAARNAMKALQ-- 335
+LF+ N+N+N + ELK+ +F + + G Y D + KAL+
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALELN 350
Query: 336 NKPLRRRKLDIHYSIPKDNPSE--KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIR-EI 392
K L + + + + K+N E K+ + TL V NL S++ ++L +IF +IR +
Sbjct: 351 GKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQAVDIRVPM 410
Query: 393 RDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE----ASRPGG 438
+T +IEF AE AL SDV G+ I ++ SR GG
Sbjct: 411 GNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGG 460
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 175 (66.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
+RTL +N++ N+ + ELK +FE +IR + K +G I+Y + ++ +A K L+
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKG---IAYIEFKSEADAEKNLEE 449
Query: 337 KP---LRRRKLDIHYSIPKDNPSEKDANQGT-------LVVFNLDSSVSTEELHQIFGIY 386
K + R + ++Y+ K E+ T LV+ NL S + E L ++F
Sbjct: 450 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 509
Query: 387 GEIREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439
I+ ++ Q K + FIEF A+ AL + N+ ++ G+ I+LE P G+
Sbjct: 510 TFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 563
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 35/169 (20%), Positives = 73/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 544
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 545 KMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDR 604
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 605 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 653
Score = 127 (49.8 bits), Expect = 0.00031, P = 0.00031
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 280 LFVRNINSNVEDSELK-ALFEQFG--DIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
LF+ N+N N +ELK A+ E F D+ + +R F Y D +A + KAL+
Sbjct: 310 LFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKF---GYVDFESAEDLEKALE 366
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395
L+ +I PK S+K TL+ NL +++ +EL ++F EIR +
Sbjct: 367 LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQD 426
Query: 396 QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
+IEF AE L +++ G+ + L + G R+
Sbjct: 427 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ 472
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 168 (64.2 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 48/174 (27%), Positives = 87/174 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
+RTL +N++ N+ + ELK +FE +IR + + +G I+Y + ++ +A K L+
Sbjct: 250 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKG---IAYIEFKSEADAEKNLEE 306
Query: 337 KP---LRRRKLDIHYSIPKDNPSEKDANQGT-------LVVFNLDSSVSTEELHQIFGIY 386
K + R + ++Y+ K E+ T LV+ NL S + E L ++F
Sbjct: 307 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 366
Query: 387 GEIREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439
I+ ++ K + FIEF A+ AL + N+ ++ G+ I+LE P G+
Sbjct: 367 TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 420
Score = 133 (51.9 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 36/169 (21%), Positives = 74/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 342 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 401
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 402 KMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDR 461
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+TA + ++ G ++ L+ ++P G F
Sbjct: 462 ETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPKGKGGF 510
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 168 (64.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 48/174 (27%), Positives = 87/174 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
+RTL +N++ N+ + ELK +FE +IR + + +G I+Y + ++ +A K L+
Sbjct: 396 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKG---IAYIEFKSEADAEKNLEE 452
Query: 337 KP---LRRRKLDIHYSIPKDNPSEKDANQGT-------LVVFNLDSSVSTEELHQIFGIY 386
K + R + ++Y+ K E+ T LV+ NL S + E L ++F
Sbjct: 453 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 512
Query: 387 GEIREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439
I+ ++ K + FIEF A+ AL + N+ ++ G+ I+LE P G+
Sbjct: 513 TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 566
Score = 130 (50.8 bits), Expect = 0.00015, P = 0.00015
Identities = 48/175 (27%), Positives = 78/175 (44%)
Query: 273 GEHPSR--TLFVRNINSNVEDSELK-ALFEQFG--DIRTIYTAC-KHRGFVMISYYDIRA 326
G P+ LF+ N+N N +ELK A+ E F D+ + +R F Y D +
Sbjct: 304 GSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKF---GYVDFES 360
Query: 327 ARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIY 386
A + KAL+ L+ +I PK S+K TL+ NL +++ +EL ++F
Sbjct: 361 AEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA 420
Query: 387 GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
EIR + +IEF AE L +++ G+ + L + G R+
Sbjct: 421 VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ 475
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 35/169 (20%), Positives = 73/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 488 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 547
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 548 KMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDR 607
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 608 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 656
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 168 (64.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 48/174 (27%), Positives = 87/174 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
+RTL +N++ N+ + ELK +FE +IR + + +G I+Y + ++ +A K L+
Sbjct: 397 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKG---IAYIEFKSEADAEKNLEE 453
Query: 337 KP---LRRRKLDIHYSIPKDNPSEKDANQGT-------LVVFNLDSSVSTEELHQIFGIY 386
K + R + ++Y+ K E+ T LV+ NL S + E L ++F
Sbjct: 454 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 513
Query: 387 GEIREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439
I+ ++ K + FIEF A+ AL + N+ ++ G+ I+LE P G+
Sbjct: 514 TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 567
Score = 130 (50.8 bits), Expect = 0.00015, P = 0.00015
Identities = 48/175 (27%), Positives = 78/175 (44%)
Query: 273 GEHPSR--TLFVRNINSNVEDSELK-ALFEQFG--DIRTIYTAC-KHRGFVMISYYDIRA 326
G P+ LF+ N+N N +ELK A+ E F D+ + +R F Y D +
Sbjct: 305 GSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKF---GYVDFES 361
Query: 327 ARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIY 386
A + KAL+ L+ +I PK S+K TL+ NL +++ +EL ++F
Sbjct: 362 AEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA 421
Query: 387 GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
EIR + +IEF AE L +++ G+ + L + G R+
Sbjct: 422 VEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ 476
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 35/169 (20%), Positives = 73/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 489 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 548
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 549 KMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDR 608
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 609 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 657
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 170 (64.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 66/254 (25%), Positives = 116/254 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGH-NFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKN 249
+ NL P +D +L + + + G N Q + V + F + E D+ A+Q N
Sbjct: 285 VKNLTPTKDYEELRTAIKEFFGKKNLQVSEVR-IGSSKRFGYVDFLSAEDMDK--ALQLN 341
Query: 250 SDFVGGVSNQGVSAGSVVG-EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308
+ G+ + A S + E +RTLFV+N+ V + E+K +FE ++R +
Sbjct: 342 GKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL 401
Query: 309 TA-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-SEKDANQG--- 363
+G I + A A++ Q + R + I Y+ K S+K +
Sbjct: 402 NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK 461
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-HNHKFIEFYDIRAAETALRTLNRS 422
TL+V NL + S E L ++F I+ ++ Q + + F+EF A+ AL + N +
Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Query: 423 DVAGKQIKLEASRP 436
++ G+ I+LE S P
Sbjct: 522 EIEGRAIRLEFSSP 535
Score = 135 (52.6 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 42/175 (24%), Positives = 77/175 (44%)
Query: 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAM 331
GE S+TL V N++ + L+ LF++ I+ + +G+ + + A+ A+
Sbjct: 456 GERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 515
Query: 332 KALQNKPLRRRKLDIHYSIP---KDNPSEKDA-NQG--TLVVFNLDSSVSTEELHQIF-- 383
+ N + R + + +S P K N + + NQ TL V L + E L + F
Sbjct: 516 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEG 575
Query: 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438
I I RDT F++F A+ A + ++ G ++ L+ ++P G
Sbjct: 576 SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKG 630
Score = 46 (21.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 68 IPSVDWLELQQSTLARDKMKRLGIVGEEGAANLSENSWNSVNHHPKSWSNLAVQP 122
+P +++Q +A K++ EE +++L E+S V PK AV P
Sbjct: 4 LPQTPKNQMKQKKMAPPP-KKVEESEEEESSDLEESSGEEVMVPPKKQQKAAVTP 57
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 166 (63.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 65/260 (25%), Positives = 117/260 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL ++ +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 311 VGNLNFNKSAPELKTGISDVFAKNDLA--VVDVR-IGMTRKFGYVDFESAEDL---EKAL 364
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ E +RTL +N+ V ELK +FE +IR +
Sbjct: 365 ELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSK 424
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK----DNPSEKDAN-QG- 363
K +G I + A + Q + R + ++Y+ K D K++ G
Sbjct: 425 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGE 484
Query: 364 --TLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
TLV+ NL S + E L ++F + ++ + ++ + K + FIEF A+ AL +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK-GYAFIEFASFEDAKEALNSC 543
Query: 420 NRSDVAGKQIKLEASRPGGA 439
N+ ++ G+ I+LE P G+
Sbjct: 544 NKREIEGRAIRLELQGPRGS 563
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 35/169 (20%), Positives = 74/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ + R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 545 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 604
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 605 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 653
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 166 (63.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 65/260 (25%), Positives = 117/260 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL ++ +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 312 VGNLNFNKSAPELKTGISDVFAKNDLA--VVDVR-IGMTRKFGYVDFESAEDL---EKAL 365
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ E +RTL +N+ V ELK +FE +IR +
Sbjct: 366 ELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSK 425
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK----DNPSEKDAN-QG- 363
K +G I + A + Q + R + ++Y+ K D K++ G
Sbjct: 426 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGE 485
Query: 364 --TLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
TLV+ NL S + E L ++F + ++ + ++ + K + FIEF A+ AL +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK-GYAFIEFASFEDAKEALNSC 544
Query: 420 NRSDVAGKQIKLEASRPGGA 439
N+ ++ G+ I+LE P G+
Sbjct: 545 NKREIEGRAIRLELQGPRGS 564
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 35/169 (20%), Positives = 74/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ + R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 546 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 605
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 606 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 654
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 166 (63.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 65/260 (25%), Positives = 117/260 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL ++ +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 313 VGNLNFNKSAPELKTGISDVFAKNDLA--VVDVR-IGMTRKFGYVDFESAEDL---EKAL 366
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ E +RTL +N+ V ELK +FE +IR +
Sbjct: 367 ELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSK 426
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK----DNPSEKDAN-QG- 363
K +G I + A + Q + R + ++Y+ K D K++ G
Sbjct: 427 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGE 486
Query: 364 --TLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
TLV+ NL S + E L ++F + ++ + ++ + K + FIEF A+ AL +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK-GYAFIEFASFEDAKEALNSC 545
Query: 420 NRSDVAGKQIKLEASRPGGA 439
N+ ++ G+ I+LE P G+
Sbjct: 546 NKREIEGRAIRLELQGPRGS 565
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 35/169 (20%), Positives = 74/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 546
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ + R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 547 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 606
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 607 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 655
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 166 (63.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 68/262 (25%), Positives = 121/262 (46%)
Query: 193 IGNLLPDED--DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL ++ +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 321 VGNLNFNKSAPELKTGISDLFAKNDLA--VVDVR-IGVSRKFGYVDFESAEDL---EKAL 374
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ + +RTL +N+ V ELK +FE +IR +
Sbjct: 375 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSK 434
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKP---LRRRKLDIHYSIPK----DNPSEKDAN- 361
K +G I+Y + + +A K L+ K + R + ++Y+ K D+ K++
Sbjct: 435 DGKSKG---IAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTW 491
Query: 362 QG---TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHN-HKFIEFYDIRAAETALR 417
G TLV+ NL S + E L ++F I+ ++ K + FIEF A+ AL
Sbjct: 492 SGESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALN 551
Query: 418 TLNRSDVAGKQIKLEASRPGGA 439
+ N+ ++ G+ I+LE P G+
Sbjct: 552 SCNKREIEGRAIRLELQGPRGS 573
Score = 134 (52.2 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 36/169 (21%), Positives = 74/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 554
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ + R + + P+ +P+ + TL V L + E L + F I I R
Sbjct: 555 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 614
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 615 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 663
Score = 127 (49.8 bits), Expect = 0.00032, P = 0.00032
Identities = 49/166 (29%), Positives = 73/166 (43%)
Query: 273 GEHPSRT--LFVRNINSNVEDSELKA----LFEQFGDIRTIYTACK-HRGFVMISYYDIR 325
G P+ + LFV N+N N ELK LF + D+ + R F Y D
Sbjct: 310 GTEPTTSFNLFVGNLNFNKSAPELKTGISDLFAK-NDLAVVDVRIGVSRKF---GYVDFE 365
Query: 326 AARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI 385
+A + KAL+ L+ +I PK S+KD + TL+ NL V+ +EL ++F
Sbjct: 366 SAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED 425
Query: 386 YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431
EIR + +IEF AE L +++ G+ I L
Sbjct: 426 AVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISL 471
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 170 (64.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 66/254 (25%), Positives = 116/254 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGH-NFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKN 249
+ NL P +D +L + + + G N Q + V + F + E D+ A+Q N
Sbjct: 283 VKNLTPTKDYEELRTAIKEFFGKKNLQVSEVR-IGSSKRFGYVDFLSAEDMDK--ALQLN 339
Query: 250 SDFVGGVSNQGVSAGSVVG-EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308
+ G+ + A S + E +RTLFV+N+ V + E+K +FE ++R +
Sbjct: 340 GKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL 399
Query: 309 TA-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-SEKDANQG--- 363
+G I + A A++ Q + R + I Y+ K S+K +
Sbjct: 400 NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK 459
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-HNHKFIEFYDIRAAETALRTLNRS 422
TL+V NL + S E L ++F I+ ++ Q + + F+EF A+ AL + N +
Sbjct: 460 TLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 519
Query: 423 DVAGKQIKLEASRP 436
++ G+ I+LE S P
Sbjct: 520 EIEGRAIRLEFSSP 533
Score = 135 (52.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 42/175 (24%), Positives = 77/175 (44%)
Query: 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAM 331
GE S+TL V N++ + L+ LF++ I+ + +G+ + + A+ A+
Sbjct: 454 GERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 513
Query: 332 KALQNKPLRRRKLDIHYSIP---KDNPSEKDA-NQG--TLVVFNLDSSVSTEELHQIF-- 383
+ N + R + + +S P K N + + NQ TL V L + E L + F
Sbjct: 514 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEG 573
Query: 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438
I I RDT F++F A+ A + ++ G ++ L+ ++P G
Sbjct: 574 SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKG 628
Score = 44 (20.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 75 ELQQSTLARDKMKRLGIVGEEGAANLSENSWNSVNHHPKSWSNLAVQP 122
+++Q +A K++ EE +++L E+S V PK AV P
Sbjct: 7 QMKQKKMAPPP-KKVEESEEEESSDLEESSGEEVMVPPKKQQKAAVTP 53
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 170 (64.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 66/254 (25%), Positives = 116/254 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGH-NFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKN 249
+ NL P +D +L + + + G N Q + V + F + E D+ A+Q N
Sbjct: 285 VKNLTPTKDYEELRTAIKEFFGKKNLQVSEVR-IGSSKRFGYVDFLSAEDMDK--ALQLN 341
Query: 250 SDFVGGVSNQGVSAGSVVG-EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308
+ G+ + A S + E +RTLFV+N+ V + E+K +FE ++R +
Sbjct: 342 GKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL 401
Query: 309 TA-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-SEKDANQG--- 363
+G I + A A++ Q + R + I Y+ K S+K +
Sbjct: 402 NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK 461
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-HNHKFIEFYDIRAAETALRTLNRS 422
TL+V NL + S E L ++F I+ ++ Q + + F+EF A+ AL + N +
Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Query: 423 DVAGKQIKLEASRP 436
++ G+ I+LE S P
Sbjct: 522 EIEGRAIRLEFSSP 535
Score = 135 (52.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 42/175 (24%), Positives = 77/175 (44%)
Query: 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAM 331
GE S+TL V N++ + L+ LF++ I+ + +G+ + + A+ A+
Sbjct: 456 GERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 515
Query: 332 KALQNKPLRRRKLDIHYSIP---KDNPSEKDA-NQG--TLVVFNLDSSVSTEELHQIF-- 383
+ N + R + + +S P K N + + NQ TL V L + E L + F
Sbjct: 516 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEG 575
Query: 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438
I I RDT F++F A+ A + ++ G ++ L+ ++P G
Sbjct: 576 SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKG 630
Score = 44 (20.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 75 ELQQSTLARDKMKRLGIVGEEGAANLSENSWNSVNHHPKSWSNLAVQP 122
+++Q +A K++ EE +++L E+S V PK AV P
Sbjct: 11 QMKQKKMAPPP-KKVEESEEEESSDLEESSGEEVMVPPKKQQKAAVTP 57
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 157 (60.3 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 50/185 (27%), Positives = 92/185 (49%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
G+ + +RTL +N+ V ELK +FE +IR + K +G I+Y + +
Sbjct: 37 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 93
Query: 328 RNAMKALQNKP---LRRRKLDIHYSIPKDNPSE----KDAN-QG---TLVVFNLDSSVST 376
+A K L+ K + R + ++Y+ K + K++ G TLV+ NL S +
Sbjct: 94 ADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATE 153
Query: 377 EELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
E L ++F + ++ + ++ + K + FIEF A+ AL + N+ ++ G+ I+LE
Sbjct: 154 ETLQEVFEKATFIKVPQNQNGKSK-GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 212
Query: 435 RPGGA 439
P G+
Sbjct: 213 GPRGS 217
Score = 129 (50.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 36/169 (21%), Positives = 73/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N+ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 139 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 198
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ + R + + P+ +P+ + TL V L + E L + F I I R
Sbjct: 199 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDR 258
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 259 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 307
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 161 (61.7 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 47/167 (28%), Positives = 84/167 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
+RTL +N++ N+ + ELK +FE +IR + K +G I+Y + ++ +A K L+
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKG---IAYIEFKSEADAEKNLEE 450
Query: 337 KP---LRRRKLDIHYSIPKDNPSEKDANQGT-------LVVFNLDSSVSTEELHQIFGIY 386
K + R + ++Y+ K E+ T LV+ NL S + E L ++F
Sbjct: 451 KQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA 510
Query: 387 GEIREIRDTQHK-HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432
I+ ++ K + FIEF A+ AL + N+ ++ G+ I+LE
Sbjct: 511 TFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 557
Score = 129 (50.5 bits), Expect = 0.00019, P = 0.00019
Identities = 48/175 (27%), Positives = 78/175 (44%)
Query: 273 GEHPSR--TLFVRNINSNVEDSELK-ALFEQFG--DIRTIYTAC-KHRGFVMISYYDIRA 326
G P+ LF+ N+N N +ELK A+ E F D+ + +R F Y D +
Sbjct: 302 GSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNRKF---GYVDFES 358
Query: 327 ARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIY 386
A + KAL+ L+ +I PK S+K TL+ NL +++ +EL ++F
Sbjct: 359 AEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA 418
Query: 387 GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
EIR + +IEF AE L +++ G+ + L + G R+
Sbjct: 419 MEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ 473
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 160 (61.4 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 66/263 (25%), Positives = 121/263 (46%)
Query: 193 IGNL--LPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 324 VGNLNFSKSASELKTGISDVFAKNDLA--VVDVR-IGVSRKFGYVDFESAEDL---EKAL 377
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ + +RTL +N+ V ELK +FE +IR +
Sbjct: 378 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSK 437
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKP---LRRRKLDIHYSIPKDNPSE----KDAN- 361
K +G I+Y + + +A K L+ K + R + ++Y+ K + K++
Sbjct: 438 DGKSKG---IAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTW 494
Query: 362 QG---TLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAETAL 416
G TLV+ NL S + E L ++F + ++ + ++ + K + FIEF A+ AL
Sbjct: 495 SGESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSK-GYAFIEFASFEDAKEAL 553
Query: 417 RTLNRSDVAGKQIKLEASRPGGA 439
+ N+ ++ G+ I+LE P G+
Sbjct: 554 NSCNKREIEGRAIRLELQGPRGS 576
Score = 129 (50.5 bits), Expect = 0.00020, P = 0.00020
Identities = 36/169 (21%), Positives = 73/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N+ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 498 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 557
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ + R + + P+ +P+ + TL V L + E L + F I I R
Sbjct: 558 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDR 617
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 618 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 666
Score = 126 (49.4 bits), Expect = 0.00041, P = 0.00041
Identities = 47/159 (29%), Positives = 71/159 (44%)
Query: 277 SRTLFVRNINSNVEDSELKA-LFEQFG--DIRTIYTACK-HRGFVMISYYDIRAARNAMK 332
S LFV N+N + SELK + + F D+ + R F Y D +A + K
Sbjct: 319 SFNLFVGNLNFSKSASELKTGISDVFAKNDLAVVDVRIGVSRKF---GYVDFESAEDLEK 375
Query: 333 ALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI 392
AL+ L+ +I PK S+KD + TL+ NL V+ +EL ++F EIR +
Sbjct: 376 ALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV 435
Query: 393 RDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431
+IEF AE L +++ G+ I L
Sbjct: 436 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISL 474
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 159 (61.0 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 68/259 (26%), Positives = 119/259 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL ++ +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 233 VGNLNFNKSAPELKTGISDLFAKNDLA--VVDVR-IGVSRKFGYVDFESAEDL---EKAL 286
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ + +RTL +N+ V ELK +FE +IR +
Sbjct: 287 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSK 346
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK----DNPSEKDAN-QG- 363
K +G I+Y + + +A K L+ K + +I Y+ K D+ K++ G
Sbjct: 347 DGKSKG---IAYIEFKTEADAEKTLEEK----QGTEIDYTGEKGQSQDHRGGKNSTWSGE 399
Query: 364 --TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHN-HKFIEFYDIRAAETALRTLN 420
TLV+ NL S + E L ++F I+ ++ K + FIEF A+ AL + N
Sbjct: 400 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 459
Query: 421 RSDVAGKQIKLEASRPGGA 439
+ ++ G+ I+LE P G+
Sbjct: 460 KREIEGRAIRLELQGPRGS 478
Score = 138 (53.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 42/208 (20%), Positives = 85/208 (40%)
Query: 238 EGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKAL 297
E D +K + +G S G++ S+TL + N++ + + L+ +
Sbjct: 361 EADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 420
Query: 298 FEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356
FE+ I+ K +G+ I + A+ A+ + + + R + + P+ +P+
Sbjct: 421 FEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 480
Query: 357 EKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414
+ TL V L + E L + F I I R+T F++F A+
Sbjct: 481 ARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKA 540
Query: 415 ALRTLNRSDVAGKQIKLEASRPGGARRF 442
A + ++ G ++ L+ ++P G F
Sbjct: 541 AKEAMEDGEIDGNKVTLDWAKPKGEGGF 568
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 159 (61.0 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 68/259 (26%), Positives = 119/259 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL ++ +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 238 VGNLNFNKSAPELKTGISDLFAKNDLA--VVDVR-IGVSRKFGYVDFESAEDL---EKAL 291
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ + +RTL +N+ V ELK +FE +IR +
Sbjct: 292 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSK 351
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK----DNPSEKDAN-QG- 363
K +G I+Y + + +A K L+ K + +I Y+ K D+ K++ G
Sbjct: 352 DGKSKG---IAYIEFKTEADAEKTLEEK----QGTEIDYTGEKGQSQDHRGGKNSTWSGE 404
Query: 364 --TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHN-HKFIEFYDIRAAETALRTLN 420
TLV+ NL S + E L ++F I+ ++ K + FIEF A+ AL + N
Sbjct: 405 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 421 RSDVAGKQIKLEASRPGGA 439
+ ++ G+ I+LE P G+
Sbjct: 465 KREIEGRAIRLELQGPRGS 483
Score = 138 (53.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 42/208 (20%), Positives = 85/208 (40%)
Query: 238 EGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKAL 297
E D +K + +G S G++ S+TL + N++ + + L+ +
Sbjct: 366 EADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 425
Query: 298 FEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356
FE+ I+ K +G+ I + A+ A+ + + + R + + P+ +P+
Sbjct: 426 FEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 485
Query: 357 EKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414
+ TL V L + E L + F I I R+T F++F A+
Sbjct: 486 ARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKA 545
Query: 415 ALRTLNRSDVAGKQIKLEASRPGGARRF 442
A + ++ G ++ L+ ++P G F
Sbjct: 546 AKEAMEDGEIDGNKVTLDWAKPKGEGGF 573
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 159 (61.0 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 68/259 (26%), Positives = 119/259 (45%)
Query: 193 IGNLLPDED--DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL ++ +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 238 VGNLNFNKSAPELKTGISDLFAKNDLA--VVDVR-IGVSRKFGYVDFESAEDL---EKAL 291
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ + +RTL +N+ V ELK +FE +IR +
Sbjct: 292 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSK 351
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK----DNPSEKDAN-QG- 363
K +G I+Y + + +A K L+ K + +I Y+ K D+ K++ G
Sbjct: 352 DGKSKG---IAYIEFKTEADAEKTLEEK----QGTEIDYTGEKGQSQDHRGGKNSTWSGE 404
Query: 364 --TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHN-HKFIEFYDIRAAETALRTLN 420
TLV+ NL S + E L ++F I+ ++ K + FIEF A+ AL + N
Sbjct: 405 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 421 RSDVAGKQIKLEASRPGGA 439
+ ++ G+ I+LE P G+
Sbjct: 465 KREIEGRAIRLELQGPRGS 483
Score = 138 (53.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 42/208 (20%), Positives = 85/208 (40%)
Query: 238 EGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKAL 297
E D +K + +G S G++ S+TL + N++ + + L+ +
Sbjct: 366 EADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEV 425
Query: 298 FEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356
FE+ I+ K +G+ I + A+ A+ + + + R + + P+ +P+
Sbjct: 426 FEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 485
Query: 357 EKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414
+ TL V L + E L + F I I R+T F++F A+
Sbjct: 486 ARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKA 545
Query: 415 ALRTLNRSDVAGKQIKLEASRPGGARRF 442
A + ++ G ++ L+ ++P G F
Sbjct: 546 AKEAMEDGEIDGNKVTLDWAKPKGEGGF 573
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 155 (59.6 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 50/230 (21%), Positives = 111/230 (48%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFG---DIRTIYTACKHRGFVMISYYDIRAARNA 330
E P +TL+V N++ +V ++ + LF Q G + + I + + + +Y+ R A +A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASA 62
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ A+ + + +++ ++++ + + +N + V +L ++TE++ F +G I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGARRFMV 444
R ++D T + F+ F++ AE A++ + + G+QI+ A+R A +
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTY 182
Query: 445 QSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSP 494
+S N Q+ +DD+ + S+ + + +G + L T SP
Sbjct: 183 ES-------NTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSP 225
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 158 (60.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 63/260 (24%), Positives = 115/260 (44%)
Query: 193 IGNL--LPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNS 250
+GNL +L +G++D N A V D+ + G ++ E + L +K
Sbjct: 316 VGNLNFSKSAPELKTGISDLFAKNDLA--VVDVR-IGVSRKFGYVDFESAEDL---EKAL 369
Query: 251 DFVG-GVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
+ G V + G+ + +RTL +N+ V ELK +FE +IR +
Sbjct: 370 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSK 429
Query: 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE----KDAN-QG- 363
K +G I + A + Q + R + ++Y+ K + K++ G
Sbjct: 430 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGE 489
Query: 364 --TLVVFNLDSSVSTEELHQIF--GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
TLV+ NL S + E L ++F + ++ + ++ + K + FIEF A+ AL +
Sbjct: 490 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK-GYAFIEFASFEDAKEALNSC 548
Query: 420 NRSDVAGKQIKLEASRPGGA 439
N+ ++ G+ I+LE P G+
Sbjct: 549 NKREIEGRAIRLELQGPRGS 568
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 35/169 (20%), Positives = 74/169 (43%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQ 335
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 490 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 549
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GIYGEIREIR 393
+ + R + + P+ +P+ + TL V L + E L + F + I R
Sbjct: 550 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 609
Query: 394 DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 610 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 658
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 152 (58.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 51/226 (22%), Positives = 106/226 (46%)
Query: 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG---FVMISYYDIRAARNAMKAL 334
RTL+V N++ +V + + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI---RE 391
+ + +++ ++++ + + +N + V +L ++TE++ F +G+I R
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 392 IRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGARRFMVQSEQ 448
++D T + F+ FY+ AE A+ + + G+QI+ A+R A + S Q
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPK----STQ 184
Query: 449 EQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSP 494
E N Q+ F+D+ + + + + +G L T SP
Sbjct: 185 EN---NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 227
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 152 (58.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 51/226 (22%), Positives = 106/226 (46%)
Query: 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG---FVMISYYDIRAARNAMKAL 334
RTL+V N++ +V + + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI---RE 391
+ + +++ ++++ + + +N + V +L ++TE++ F +G+I R
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 392 IRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGARRFMVQSEQ 448
++D T + F+ FY+ AE A+ + + G+QI+ A+R A + S Q
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPK----STQ 184
Query: 449 EQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSP 494
E N Q+ F+D+ + + + + +G L T SP
Sbjct: 185 EN---NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 227
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 148 (57.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 58/226 (25%), Positives = 106/226 (46%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
S L+V ++ +S+L LF ++GDI I T RGF I Y + A A +ALQ
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRI-TVYSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 337 KPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ 396
L ++ I Y+ P P + +L V + +VS ++L + F +G+I + R +
Sbjct: 76 ANLNGSQIKIEYARPA-KPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLR 128
Query: 397 HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC 456
+ FI++Y++ A A +++N + G ++++ R ++ + + N+
Sbjct: 129 ERKT-AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMN 186
Query: 457 QIP-----FDDLSSGQMVSSGVI------TST-CMDNGSIQVLHSA 490
P ++D G + S V+ T+T C D Q+LH+A
Sbjct: 187 HKPQYPHSYEDFK-GDVQPSKVLWIGFPPTATQCNDE---QILHNA 228
Score = 60 (26.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 488 HSATRSPAIALTESHQTSSVPNG-LPSLARVGSIGKQFGHYEPNLSLDEMKFGNQH---- 542
H P+ ++ +HQ++ + NG PS A G Q H N S + +GNQ+
Sbjct: 663 HQPMSGPSTVVSTAHQSNGLYNGEAPSQA--WKRGPQTVHDASNQSFQQ--YGNQYTPAG 718
Query: 543 -----PSFHPHSL--PEYHDSLANG-LPYNSPS 567
PS +P + P Y + +G + Y S S
Sbjct: 719 QLPPPPSRYPPASNNPNYTSGMVHGNMQYQSQS 751
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 490 ATRSPAIALTESHQTSSVPNGLPSLA 515
AT PA ESHQ S P+ + S A
Sbjct: 653 ATSQPAAP--ESHQPMSGPSTVVSTA 676
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 144 (55.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 50/228 (21%), Positives = 109/228 (47%)
Query: 278 RTLFVRNINSNVEDSELKALFEQFG---DIRTIYTACKHRGFVMISYYDIRAARNAMKAL 334
+TL+V N++ +V ++ + LF Q G + + I + + + +++ R A A+ A+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI---RE 391
+ + +++ ++++ + + +N + V +L ++TE++ F +G I R
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 122
Query: 392 IRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGARRFMVQSEQ 448
++D T + F+ F++ AE A++ + + G+QI+ A+R A + +S
Sbjct: 123 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES-- 180
Query: 449 EQDDLNLCQIPFDDLSSGQMVSSGVITSTC--MDNGSIQVLHSATRSP 494
N Q+ +D++ S S G T C + +G + L T SP
Sbjct: 181 -----NTKQLSYDEVVSQS--SPGNCTVYCGGVTSGLTEQLMRQTFSP 221
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 144 (55.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 46/212 (21%), Positives = 103/212 (48%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFG---DIRTIYTACKHRGFVMISYYDIRAARNA 330
E P +TL+V N++ +V ++ + LF Q G + + I + + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ A+ + + +++ ++++ + + +N + V +L ++TE++ F +G I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGARRFMV 444
R ++D T + F+ F++ AE A++ + + G+QI+ A+R A +
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTY 182
Query: 445 QSEQEQDDLNLCQIPFDDLSSGQMVSSGVITS 476
+S +Q L+ ++ S V G +TS
Sbjct: 183 ESNTKQ--LSYDEVVNQSSPSNCTVYCGGVTS 212
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 151 (58.2 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 43/162 (26%), Positives = 79/162 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH----RGFVMISYYDIRAARNAMKALQ 335
+F++N++S +++ L F FG+I + A +G+ + Y AA NA+K +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 336 NKPLRRRKLDI-HYSIPKDNPS---EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391
L +K+ + H+ KD S E AN + + N+D V EE ++F +GEI
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITS 251
Query: 392 I---RDTQHK-HNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
RD++ K F+ F +A+ A+ +N +V +++
Sbjct: 252 ATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKL 293
Score = 127 (49.8 bits), Expect = 0.00032, P = 0.00032
Identities = 36/153 (23%), Positives = 71/153 (46%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHR--GFVMISYYDIRAARNAM 331
S +L+V ++ +V ++ L LF G + +I A R G+ ++Y D A+
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 332 KALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391
L ++ + I +S + +P+ + QG + + NLDS++ + LH F +G I
Sbjct: 101 DELNYTLIKGKPCRIMWS--QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 392 IRDTQHKHN----HKFIEFYDIRAAETALRTLN 420
+ Q + + F+ + AA A++ +N
Sbjct: 159 CKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 142 (55.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 45/168 (26%), Positives = 83/168 (49%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHR--G----FVMISYYDIRAARNAMKA 333
L + + ++ +SEL LF +FG+IR +HR G + + Y R A A+
Sbjct: 43 LILNYLPQDMTESELHRLFSKFGEIRKA-KIIRHRRTGISCCYGFVDYVSERQAAAAVNG 101
Query: 334 LQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR 393
+ R ++L + ++ PSE ++ +L V NL + + +++ ++F YG I ++
Sbjct: 102 MDGYETRGKRLKVAFA----RPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVN 157
Query: 394 DTQHKHNHK-----FIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436
+HK N++ F++F +R AE A ++R + G ASRP
Sbjct: 158 LLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEG------ASRP 199
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 52/232 (22%), Positives = 111/232 (47%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFG---DIRTIYTACKHRGFVMISYYDIRAARNA 330
E P +TL+V N++ +V ++ + LF Q G + + I + + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ A+ + + +++ ++++ + + +N + V +L ++TE++ F +G I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGARRFMV 444
R ++D T + F+ F++ AE A++ + + G+QI+ A+R A +
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTY 182
Query: 445 QSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTC--MDNGSIQVLHSATRSP 494
+S N Q+ +D++ S S G T C + +G + L T SP
Sbjct: 183 ES-------NTKQLSYDEVVSQS--SPGNCTVYCGGVTSGLTEQLMRQTFSP 225
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIR-----DTQHKHNHKFIEFYDIRAAETALRT 418
TL + NL + + + L +FG YG + R DTQ +++F + A+ AL
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 419 LNRSDVAGKQIKLEASRP 436
+N + G+ +L+ S P
Sbjct: 331 MNGEYIEGRPCRLDFSTP 348
Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDI---RTIYTAC--KHRGFVMISYYDIRAAR 328
E P+ TLFV ++ N++D+ LK FE G + R I K RG+ + + AA
Sbjct: 165 EEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAE 223
Query: 329 NAMKALQNKPLRRRKLDIHYSIPKDNPSEKD 359
A++ +Q K + R +++ S K + S+ +
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKPHASKSN 254
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIR-----DTQHKHNHKFIEFYDIRAAETALRT 418
TL + NL + + + L +FG YG + R DTQ +++F + A+ AL
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 419 LNRSDVAGKQIKLEASRP 436
+N + G+ +L+ S P
Sbjct: 331 MNGEYIEGRPCRLDFSTP 348
Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDI---RTIYTAC--KHRGFVMISYYDIRAAR 328
E P+ TLFV ++ N++D+ LK FE G + R I K RG+ + + AA
Sbjct: 165 EEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAE 223
Query: 329 NAMKALQNKPLRRRKLDIHYSIPKDNPSEKD 359
A++ +Q K + R +++ S K + S+ +
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKPHASKSN 254
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 130 (50.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 260 GVSAGSVVGEHPY--GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTI--YTAC 311
G A +V G P G P+ T+++ N+N ++ ELK A+F QFG I + +
Sbjct: 3 GEVAAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTL 62
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLV 366
KH+G + + D+ +A A+K++Q+ P + + I Y+ K + K GT V
Sbjct: 63 KHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKA--DGTFV 115
Score = 53 (23.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
L V NL + L +F Y +E+R + K F+E+ D A A+ L
Sbjct: 181 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHL 235
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 130 (50.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 260 GVSAGSVVGEHPY--GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTI--YTAC 311
G A +V G P G P+ T+++ N+N ++ ELK A+F QFG I + +
Sbjct: 3 GEVAAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTL 62
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLV 366
KH+G + + D+ +A A+K++Q+ P + + I Y+ K + K GT V
Sbjct: 63 KHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKA--DGTFV 115
Score = 53 (23.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
L V NL + L +F Y +E+R + K F+E+ D A A+ L
Sbjct: 181 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHL 235
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/175 (22%), Positives = 87/175 (49%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG---FVMISYYDIRAARNA 330
E RTL+V N++ +V ++ + +F Q G ++ G + + +Y+ R A A
Sbjct: 5 EDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAA 64
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ A+ + + + + ++++ + + +N + V +L +ST+++ F +G+I
Sbjct: 65 LAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKIS 124
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGA 439
R ++D T + FI F + AE+A++ +N + G+QI+ A+R A
Sbjct: 125 DARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSA 179
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 154 (59.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 41/165 (24%), Positives = 81/165 (49%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--IYTACKHRGFVMISYYDIRAARNAM 331
E +TL+V N++S+V + L ALF G +++ I + + I Y + +AA A+
Sbjct: 3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTAL 62
Query: 332 KALQNKPLRRRKLDIHYSI-PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
A+ + +++ ++++ P + P ++ + V +L + TE L + F +GEI
Sbjct: 63 TAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEIS 122
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430
R +RD T + F+ F AE A++ +N + + I+
Sbjct: 123 NCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIR 167
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 603 GGVFGSPRNGS 613
GG+ G P NGS
Sbjct: 189 GGMGGGPGNGS 199
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P++T+++ N+N ++ ELK A+F QFG I I K RG + + +I +A N
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ +Q P + + I YS
Sbjct: 65 ALRTMQGFPFYDKPMQIAYS 84
Score = 61 (26.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 349 SIPKDNPS---EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIE 405
S NP+ E+ NQ L + NL + L +F + +E+R ++H+ F+E
Sbjct: 126 SAENSNPNAQTEQPPNQ-ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 184
Query: 406 F---YDIRAAETALR 417
F AA+ AL+
Sbjct: 185 FTTELQSNAAKEALQ 199
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 140 (54.3 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 60/237 (25%), Positives = 99/237 (41%)
Query: 219 TVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSR 278
T + LE D+ S G E EGD V + + G VS VS + E P ++
Sbjct: 98 TENSLESQDV-SEGD--ESEGDASEGDVSEGDESEGDVSEGAVSERA---EFPEPSEEAK 151
Query: 279 TLFVRNINSNVEDSELKALFEQFGDIR---TIYT--ACKHRGFVMISYYDIRAARNAMKA 333
LFV N+ +V L LFEQ G + IY + RGF ++ + A A++
Sbjct: 152 -LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 334 LQNKPLRRRKLDIHYSIPKDNPSEKDAN--QGTLVVF--NLDSSVSTEELHQIFGIYGEI 389
L R L ++ + P+ + E+ + V+ NL V L Q+F +G++
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 390 REIR-----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
E R +T F+ D+ A+ L+ ++ G+ I++ + RR
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 141 (54.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 41/161 (25%), Positives = 78/161 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRT--IYTACK-HRGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FG I + + T + +G+ + Y D RAA A++ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNG 159
Query: 337 KPLRRRKLDI-HYSIPKDNPSE---KDANQGTLVVFNLDSSVSTEELHQIFGIYGE---I 389
K LR L + + KD +E K A + + N + E L +F YG+ +
Sbjct: 160 KLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSV 219
Query: 390 REIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAGKQI 429
+ ++D K F+ F +AA+ A+ +N D+ G+ I
Sbjct: 220 KVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 138 (53.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 38/177 (21%), Positives = 78/177 (44%)
Query: 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAA 327
+H GE S+TL + N++ + + L+ +FE+ I+ K +G+ I + A
Sbjct: 104 QHVLGE--SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDA 161
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF--GI 385
+ A+ + + + R + + P+ +P+ + TL V L + E L + F +
Sbjct: 162 KEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV 221
Query: 386 YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF 442
I R+T F++F A+ A + ++ G ++ L+ ++P G F
Sbjct: 222 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 278
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 142 (55.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 38/159 (23%), Positives = 75/159 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KH--RGFVMISYYDIRAARNAMKALQN 336
+F++N+ ++++ L F FG+I + C +H RGF + + AA+NA+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDANQ---GTLVVFNLDSSVSTEELHQIFGIYGEIREI 392
L RK+ + H+ ++ E A + V NL V + L +F +G++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSV 220
Query: 393 R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427
+ D+ H F+ F A+ A+ +N +V+G+
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGR 259
Score = 50 (22.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 491 TRSPAIALTESHQTSS-VPNGLPSLARVGSIGKQ 523
+R P + S Q S+ VP+ +P RV +IG Q
Sbjct: 457 SRRPLTPVGSSRQVSTHVPHLVPHTQRVANIGTQ 490
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 140 (54.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 45/193 (23%), Positives = 92/193 (47%)
Query: 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI---RTIYTACKHRGFVMISYYDIRAARN 329
G RTL+V N++S V + + LF Q G + + I+ + + + + D A
Sbjct: 41 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDG-SNDPYAFVEFSDHGQASQ 99
Query: 330 AMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQGTLV-VFNLDSSVSTEELHQIFGIYG 387
A++ + + L R++ +++++ P S+ D + V V +L S V ++L + F +G
Sbjct: 100 ALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFG 159
Query: 388 EIRE---IRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASR-PGGAR 440
++ + IRDT + F+ + AE A+ +N + + I+ A+R PG
Sbjct: 160 DVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQE 219
Query: 441 RFMVQSEQEQDDL 453
+ +E+ D++
Sbjct: 220 KPSHYNEKSYDEI 232
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 142 (55.0 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 39/159 (24%), Positives = 75/159 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACK-H--RGFVMISYYDIRAARNAMKALQN 336
+F++N+ ++++ L F FG+I + C H RGF + + AA+NA++ +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDANQ---GTLVVFNLDSSVSTEELHQIFGIYGEIREI 392
L RK+ + H+ ++ +E A + V NL V L +F +G+I +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSV 220
Query: 393 R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427
+ D+ H F+ F A+ A+ +N +V+G+
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGR 259
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 155 (59.6 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 64/282 (22%), Positives = 121/282 (42%)
Query: 154 RKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGH 213
RK + S I N ++S ++ +S K++E G L +D L + +T M
Sbjct: 794 RKSQTSTINIPQSPVTNGLSSSQ--DDKLKSRKKLETSQ-GGLNSSKDSLATAITKSMAA 850
Query: 214 NFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYG 273
N +V + SG + + S+ + + + + +G+
Sbjct: 851 NSSPTSVTTTVSIN--GSGSNSLSTSATNINTSTQESEKIKLSWFEFQTLSNSIGDGEDE 908
Query: 274 EH-PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAM 331
+H PSR L+V NI +V + +LK F FG++ ++ H + +++ D A NA
Sbjct: 909 DHLPSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRIL--HNKYCAFVNFKDTNEAINAK 966
Query: 332 KALQNKPLRRRKLDIHYSIPKDN-------------PSEKDANQGTLVVFNLDSSVSTEE 378
K + N+ L + + +++ PK + P ++ + + N+ ++ +E
Sbjct: 967 KGMHNQVLGSQYIVVNFRHPKSDDFINGVPVVPITTPETLNSISRAIYIGNVSDNLPEKE 1026
Query: 379 LHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 420
+ + YGEI IR + K F+ F +I A AL+TLN
Sbjct: 1027 IRKECEKYGEIESIRILRKKAC-AFVNFMNIPNATAALQTLN 1067
Score = 41 (19.5 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 98 ANLSENSWNSVNHHPKSWSNLAVQPGINSLSGNRSGIN 135
+N++ NS NS+N + N A NS S N + N
Sbjct: 386 SNMNSNSNNSLNGNININGNSANIINNNSSSNNNNNNN 423
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 91 IVGEEGAANLSENSWNSVNHHPKSWSNLAVQPGINSLSGN-RSGINGI 137
I+ ++N + N+ N+ N++ + +N N+ + N + ING+
Sbjct: 409 IINNNSSSNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNSNNNINGL 456
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 100 (40.3 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHR-----GFVMISYYDIRAARNAM 331
S LFVRN++ ++SEL+ +F FG I I+ A R GF + Y D AA A
Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353
Query: 332 KALQNKPLRRRKLDI 346
+ L K + R L I
Sbjct: 354 RNLDGKIFQGRLLHI 368
Score = 94 (38.1 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 352 KDNPSEKDANQGT-LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEF 406
K++ ++K A + T +++ NL + +++ +FG YG++R +R + F +F
Sbjct: 685 KEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADF 744
Query: 407 YDIRAAETALRTLNRSDVAGKQIKLE 432
R AE A+ L + + G+++ LE
Sbjct: 745 VSAREAENAMDALKNTHLLGRRLVLE 770
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 116 (45.9 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTI-----YTACKHRGFVMISYYDIRAARNAMKAL 334
LFV I+ +++ L +F FGDIR I T K+RGF + Y ++ A++A+ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 335 QNKPLRRRKLDIHYSIPK 352
N L +++ ++YS K
Sbjct: 70 NNFELNGKRIHVNYSKTK 87
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 116 (45.9 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTI-----YTACKHRGFVMISYYDIRAARNAMKAL 334
LFV I+ +++ L +F FGDIR I T K+RGF + Y ++ A++A+ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 335 QNKPLRRRKLDIHYSIPK 352
N L +++ ++YS K
Sbjct: 70 NNFELNGKRIHVNYSKTK 87
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 136 (52.9 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 39/159 (24%), Positives = 76/159 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KH--RGFVMISYYDIRAARNAMKALQN 336
+F++N+ ++++ L F FG+I + AC +H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDANQ---GTLVVFNLDSSVSTEELHQIFGIYGE---I 389
L RK+ + H+ ++ +E A + V NL V + L +F +G+ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 390 REIRDTQ-HKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427
+ +RD H F+ F A+ A+ +N +V+G+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 130 (50.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 47/160 (29%), Positives = 76/160 (47%)
Query: 279 TLFVRNINSNVEDSELKALFE---QFGDIRTIYTACKHR--GFVMISYYDIRAARNAMKA 333
+L+V +++ NV DS+L F Q +R A + G+ ++Y + A AM+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 334 LQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR 393
L L + + I YS +D+ S + + G L V NLD SV + LH+ F G I +
Sbjct: 107 LNYSYLNGKMIRITYS-SRDS-SARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCK 164
Query: 394 -DTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
T H + F++F +A+ A+ LN + KQI
Sbjct: 165 VATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 59 (25.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 813 TTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPF 872
T + +KN+ T L ++ + + D K++C + F+N +P
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRC---FGFVNFENPEDAARA 281
Query: 873 HQAFNGKKWE 882
+A NGKK++
Sbjct: 282 VEALNGKKFD 291
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 139 (54.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 41/164 (25%), Positives = 82/164 (50%)
Query: 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHR-----GFVMISYYDIRAARN 329
HP+ +L+ +++ V ++ L LF+ ++ ++ C+ + G+ I++ + A
Sbjct: 46 HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSV-RVCRDQNRRSLGYAYINFSNPNDAYR 104
Query: 330 AMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI 389
AM+AL PL R + I S +PS + + +G + + NLD+S+ + L + F +G I
Sbjct: 105 AMEALNYTPLFDRPIRIMLS--NRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTI 162
Query: 390 REIR---D-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
+ D T + F++F +A+ A+ LN + KQ+
Sbjct: 163 LSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 140 (54.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 48/194 (24%), Positives = 92/194 (47%)
Query: 246 VQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305
VQ G + SA + G + + +L+V +++ NV DS+L F Q G +
Sbjct: 4 VQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVV 63
Query: 306 TIYTACK----HR--GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKD 359
T+ C+ R G+ +++ + + A A++ L PL + + + YS +D PS +
Sbjct: 64 TV-RVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS-HRD-PSVRR 120
Query: 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR---DTQ-HKHNHKFIEFYDIRAAETA 415
+ G + + NLD S+ + LH F +G I + D+ + F+++ + +A+ A
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 416 LRTLNRSDVAGKQI 429
+ LN + KQ+
Sbjct: 181 IEKLNGMLLNDKQV 194
Score = 47 (21.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 904 IAHFQNSS-LMNEDKRCRPILF-HTDGPN-AGDPEPFPMGTNIRSRLG---KPRINGNEE 957
I H Q + +M + R +F + G +GD P+ MG N+ +G N E
Sbjct: 494 IQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPE 553
Query: 958 SQR 960
QR
Sbjct: 554 QQR 556
Score = 42 (19.8 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 429 IKLEASRPGGARR-FMVQSEQEQDDL 453
++ + RPGG RR +Q Q+Q+ +
Sbjct: 478 VQPQQQRPGGGRRPGGIQHSQQQNPM 503
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/181 (27%), Positives = 79/181 (43%)
Query: 250 SDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
S GG + + G ++G + + L V + N+ E K+LF GDI +
Sbjct: 11 SQVAGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 310 AC-----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGT 364
+ G+ ++Y D A A+ L L+ + + + Y+ P + S +DAN
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS-SASIRDAN--- 126
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRTL 419
L V L ++S +E+ Q+F YG I R + D T FI F AE A++ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 420 N 420
N
Sbjct: 187 N 187
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/181 (27%), Positives = 79/181 (43%)
Query: 250 SDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
S GG + + G ++G + + L V + N+ E K+LF GDI +
Sbjct: 11 SQVAGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 310 AC-----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGT 364
+ G+ ++Y D A A+ L L+ + + + Y+ P + S +DAN
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS-SASIRDAN--- 126
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRTL 419
L V L ++S +E+ Q+F YG I R + D T FI F AE A++ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 420 N 420
N
Sbjct: 187 N 187
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/181 (27%), Positives = 79/181 (43%)
Query: 250 SDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT 309
S GG + + G ++G + + L V + N+ E K+LF GDI +
Sbjct: 11 SQVAGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 310 AC-----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGT 364
+ G+ ++Y D A A+ L L+ + + + Y+ P + S +DAN
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS-SASIRDAN--- 126
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRTL 419
L V L ++S +E+ Q+F YG I R + D T FI F AE A++ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 420 N 420
N
Sbjct: 187 N 187
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 139 (54.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 47/174 (27%), Positives = 85/174 (48%)
Query: 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRT------IYTAC----KHRGFVMISYYDIR 325
P+ LFV NI + E+ E+FG + IY++ K+RGF + Y +
Sbjct: 243 PNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHK 299
Query: 326 AARNAMKALQNKPLRRRKLDI--HYSIPKDNPSEKDANQ-GTLVVFNLDSSVSTEELHQI 382
AA A + L ++ DI ++ P++ P E+ ++ L V NL VS ++L +
Sbjct: 300 AASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQ 359
Query: 383 FGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436
F YG++ ++ + ++ FI F D +A A+R LN ++ I++ ++P
Sbjct: 360 FEQYGKVERVKKIK---DYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKP 410
>ZFIN|ZDB-GENE-091116-1 [details] [associations]
symbol:ptbp3 "polypyrimidine tract binding protein 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-091116-1 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:9991
OMA:PPSVTMD EMBL:BX510369 EMBL:CR931761 IPI:IPI00493597
RefSeq:XP_001335967.1 UniGene:Dr.40305 Ensembl:ENSDART00000040308
Ensembl:ENSDART00000146727 GeneID:798982 KEGG:dre:798982
NextBio:20933630 Uniprot:E7FB37
Length = 522
Score = 103 (41.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 360 ANQGTLVVFNLD-SSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRT 418
A L+V NL+ S+S EL +FG+YG++ ++ +K + I+ D A+ A+
Sbjct: 325 AIHSVLLVSNLNPDSISPHELFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSH 384
Query: 419 LNRSDVAGKQIKLEASR 435
LN + GK I++ S+
Sbjct: 385 LNGQRLYGKVIRVTISK 401
Score = 83 (34.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 249 NSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308
N+ G +S G + S G P G+ P + V N+ V L +F +FG + I
Sbjct: 125 NAVHTGNMSLSGTATASDGGMMP-GQSPVLRIIVENLYYPVSLEVLHQIFSKFGTVLKII 183
Query: 309 TACKHRGF-VMISYYDIRAARNAMKALQNK 337
T K+ F ++ Y D A +A AL +
Sbjct: 184 TFTKNNQFQALLQYADPMNAHHAKVALDGQ 213
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 119 (46.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK ALF QFG I I + RG + + ++ AA N
Sbjct: 14 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATN 73
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 74 ALRQLQGFPFYNKPMRIQYA 93
Score = 52 (23.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
L + NL + L +F + +E+R KH+ F+EF
Sbjct: 157 LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEF 198
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 143 (55.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQ 335
+FV+N++ ++++ L F FG+I + A K + + + Y D +A+ A++ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395
L + + + I K + D L V N SV+ L Q+F YGEI +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVK 225
Query: 396 QHKHNHKF--IEFYDIRAAETALRTLN 420
N KF I + D +A+ A+ LN
Sbjct: 226 MDNKNRKFCFINYADAESAKNAMDNLN 252
Score = 131 (51.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/168 (23%), Positives = 81/168 (48%)
Query: 275 HPS---RTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC------KHRGFVMISYYDIR 325
HPS +L+V ++N +V ++ L +F G + +I C K G+ ++Y+++
Sbjct: 10 HPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSI-RVCRDSVTRKSLGYAYVNYHNLA 68
Query: 326 AARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI 385
A A+ L ++ + + +S +D PS + + G + V NLD S+ + L F +
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 386 YGEIREIR---DTQHKH-NHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
+G I + D K ++ F+ + D +A+ A+ +N + K +
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 59 (25.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 20/72 (27%), Positives = 29/72 (40%)
Query: 809 DDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQ 868
D T L +KN P+ T L + + G + + +D KN+ + FIN D
Sbjct: 189 DTKFTNLYVKNFPDSVTETHLRQLFNPY--GEITSMIVKMDNKNR---KFCFINYADAES 243
Query: 869 IIPFHQAFNGKK 880
NGKK
Sbjct: 244 AKNAMDNLNGKK 255
Score = 45 (20.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 775 NERMRNLSYR--RNESN-SNHADKKQYELDID 803
N MRN++ R RN N N ++KQ L+I+
Sbjct: 693 NNNMRNMNNRANRNMGNLGNMNNQKQLPLNIN 724
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 143 (55.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQ 335
+FV+N++ ++++ L F FG+I + A K + + + Y D +A+ A++ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 336 NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395
L + + + I K + D L V N SV+ L Q+F YGEI +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVK 225
Query: 396 QHKHNHKF--IEFYDIRAAETALRTLN 420
N KF I + D +A+ A+ LN
Sbjct: 226 MDNKNRKFCFINYADAESAKNAMDNLN 252
Score = 131 (51.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/168 (23%), Positives = 81/168 (48%)
Query: 275 HPS---RTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC------KHRGFVMISYYDIR 325
HPS +L+V ++N +V ++ L +F G + +I C K G+ ++Y+++
Sbjct: 10 HPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSI-RVCRDSVTRKSLGYAYVNYHNLA 68
Query: 326 AARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI 385
A A+ L ++ + + +S +D PS + + G + V NLD S+ + L F +
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 386 YGEIREIR---DTQHKH-NHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
+G I + D K ++ F+ + D +A+ A+ +N + K +
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 59 (25.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 20/72 (27%), Positives = 29/72 (40%)
Query: 809 DDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQ 868
D T L +KN P+ T L + + G + + +D KN+ + FIN D
Sbjct: 189 DTKFTNLYVKNFPDSVTETHLRQLFNPY--GEITSMIVKMDNKNR---KFCFINYADAES 243
Query: 869 IIPFHQAFNGKK 880
NGKK
Sbjct: 244 AKNAMDNLNGKK 255
Score = 45 (20.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 775 NERMRNLSYR--RNESN-SNHADKKQYELDID 803
N MRN++ R RN N N ++KQ L+I+
Sbjct: 693 NNNMRNMNNRANRNMGNLGNMNNQKQLPLNIN 724
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 136 (52.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 45/196 (22%), Positives = 89/196 (45%)
Query: 254 GGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--- 310
GG + +S G E R L+V +++ V + L+ +FE G ++ +
Sbjct: 61 GGDQSALMSPGGTFTRRTAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK 120
Query: 311 -CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKD--ANQGTLVV 367
K + + Y D AA AM+ L + + + ++ ++++ + K+ +N + V
Sbjct: 121 NAKGYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFV 180
Query: 368 FNLDSSVSTEELHQIFGIYGEIREIR---D--TQHKHNHKFIEFYDIRAAETALRTLNRS 422
+L + V+ E L Q F ++G + E R D T + F+ F D AE AL +++
Sbjct: 181 GDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGE 240
Query: 423 DVAGKQIKLE-ASRPG 437
+ + I+ A++ G
Sbjct: 241 WLGSRAIRCNWANQKG 256
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 134 (52.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 42/161 (26%), Positives = 78/161 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
+FV N+ S + EL+ALFE++G + K+ GFV + + AA+ A+ AL +
Sbjct: 4 IFVGNVASATTEDELRALFEKYGAVSDC-DILKNYGFVHMD--EEEAAQKAVSALHKHEV 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
++ + Y+ K + K + V N+ V+ ++ ++F +G++ E +
Sbjct: 61 NGSRITVEYATTKVRNATK------IYVGNVPEGVAAAKIKELFQPFGKVVECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440
N+ F+ A A+ LN S V G++I + SR +R
Sbjct: 112 NYAFVHMQRENEALDAIAKLNHSKVDGQKIFVSLSRSNPSR 152
Score = 43 (20.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 542 HPSFHPHSLP 551
HP HPH LP
Sbjct: 170 HPHDHPHFLP 179
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 110 (43.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFG---DIRTIYTACKHRGFVMISYYDIRAAR 328
P++++++++IN ++ ELK LF QFG D+ + T K RG + + ++ AA
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTP-KLRGQAWVVFTEVTAAS 66
Query: 329 NAMKALQNKPLRRRKLDIHYSIPKDN 354
NA++ +QN P + + I Y+ K +
Sbjct: 67 NAVRQMQNFPFYDKPMRIQYAKSKSD 92
Score = 62 (26.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 350 IPKDNPSEKDANQGTLVVF--NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFY 407
+P PS +D ++F NL ++ L +F Y +EIR + K F+E+
Sbjct: 140 VPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYE 199
Query: 408 DIRAAETALRTL 419
D + A++ L
Sbjct: 200 DDVQSSMAMQAL 211
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 113 (44.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 275 HPSRTLFVRNINSNVEDSELKA----LFEQFGDIRTIYTACKH--RGFVMISYYDIRAAR 328
+P+ T++V N+N V+ ELK +F QFG+I + + K RG I + ++ +A
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSAS 64
Query: 329 NAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLV 366
NA++ALQ P + + I Y+ +++ +GT V
Sbjct: 65 NALRALQGFPFYGKPMRIQYA--REDSDVISRAKGTFV 100
Score = 57 (25.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 355 PSEKDAN---QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRA 411
P E D L N+ E++ IF + +RE+R + + FIE+
Sbjct: 132 PQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDL 191
Query: 412 AETALRTLNRSDVAGKQ 428
+E A + L+ + Q
Sbjct: 192 SEPARQALDNFRITPTQ 208
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 113 (44.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 275 HPSRTLFVRNINSNVEDSELKA----LFEQFGDIRTIYTACKH--RGFVMISYYDIRAAR 328
+P+ T++V N+N V+ ELK +F QFG+I + + K RG I + ++ +A
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSAS 64
Query: 329 NAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLV 366
NA++ALQ P + + I Y+ +++ +GT V
Sbjct: 65 NALRALQGFPFYGKPMRIQYA--REDSDVISRAKGTFV 100
Score = 57 (25.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 355 PSEKDAN---QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRA 411
P E D L N+ E++ IF + +RE+R + + FIE+
Sbjct: 132 PQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDL 191
Query: 412 AETALRTLNRSDVAGKQ 428
+E A + L+ + Q
Sbjct: 192 SEPARQALDNFRITPTQ 208
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 112 (44.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 24/115 (20%), Positives = 59/115 (51%)
Query: 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG---FVMISYYDIRAARNAMKAL 334
RTL+V N++ +V + + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI 389
+ + +++ ++++ + + +N + V +L ++TE++ F +G+I
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Score = 110 (43.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 40/136 (29%), Positives = 62/136 (45%)
Query: 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHN--HKFIEFYDIRAAE 413
E D TL V NL V+ + Q+F G + + T+H N + F+EFY+ R A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 414 TALRTLNRSDVAGKQIKLE-ASRPGGARRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSSG 472
AL +N + GK++K+ A+ P S Q++D N + DLS +++
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTP---------SSQKKDTSNHFHVFVGDLSPE--ITTE 111
Query: 473 VITSTCMDNGSIQVLH 488
I S G I + H
Sbjct: 112 DIKSAFAPFGKISIAH 127
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 112 (44.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 40/150 (26%), Positives = 70/150 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
++ F+ A A+R L+ ++ G+ I
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGRII 141
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 50/199 (25%), Positives = 88/199 (44%)
Query: 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK 337
R +FV N S+L+ LF+++G + + G+ + + D R A +A++ L N
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLDNF 58
Query: 338 PL--RRRKLDIHYSIPKDNPSEKDANQG-------TLVVFNLDSSVSTEELHQI---FGI 385
P +R+L + ++ + DA TL V N D + T+E H I F
Sbjct: 59 PFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDP-IRTKE-HDIEKHFEP 116
Query: 386 YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQ 445
YG++ +R + N F++F A AL RS + + + +E + ++
Sbjct: 117 YGKVTNVRI---RRNFSFVQFETQEDATKALEATQRSKILDRVVSVE---------YALK 164
Query: 446 SEQEQDDLNLCQIPFDDLS 464
+ E+DD N + P LS
Sbjct: 165 DDDERDDRNGGRSPRRSLS 183
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/177 (27%), Positives = 78/177 (44%)
Query: 254 GGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-- 311
GG + + G ++G + + L V + N+ E K+LF GDI +
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 312 ---KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVF 368
+ G+ ++Y D A A+ L L+ + + + Y+ P + S +DAN L V
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS-SASIRDAN---LYVS 130
Query: 369 NLDSSVSTEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
L ++S +E+ Q+F YG I R + D T FI F AE A++ LN
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN 187
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/177 (27%), Positives = 78/177 (44%)
Query: 254 GGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-- 311
GG + + G ++G + + L V + N+ E K+LF GDI +
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 312 ---KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVF 368
+ G+ ++Y D A A+ L L+ + + + Y+ P + S +DAN L V
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS-SASIRDAN---LYVS 130
Query: 369 NLDSSVSTEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
L ++S +E+ Q+F YG I R + D T FI F AE A++ LN
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN 187
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 134 (52.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 45/230 (19%), Positives = 108/230 (46%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT---IYTACKHRGFVMISYYDIRAARNA 330
E P +TL+V N++ +V ++ + LF Q G ++ I + + + +++ R A +
Sbjct: 5 EQP-KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHAAAS 63
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ A+ + + +++ ++++ + + +N + V +L ++T+++ F +G I
Sbjct: 64 LAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRIS 123
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGARRFMV 444
R ++D T + F+ F++ AE A++ + + G+QI+ A+R A +
Sbjct: 124 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATY 183
Query: 445 QSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSP 494
++ N + FD++ + S+ + + G + L T SP
Sbjct: 184 ET-------NTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSP 226
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 591 GVSSNGHLMEPTGGVFGS 608
G SNG ++EP GV G+
Sbjct: 353 GAVSNGGVVEPAQGVNGT 370
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 132 (51.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/173 (28%), Positives = 77/173 (44%)
Query: 260 GVSAGSVVGEHPYGE-HPSRT-LFVRNINSNVEDSELKALFEQFGDIRTI-----YTACK 312
G+S GS + + S T L V + ++ D EL ALF G I T Y
Sbjct: 105 GLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY 164
Query: 313 HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDS 372
G+ + + ++ A+K L +R ++L + Y+ P S KD N L V NL
Sbjct: 165 SFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP-GGESIKDTN---LYVTNLPR 220
Query: 373 SVSTEELHQIFGIYGEIRE---IRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
+++ ++L IFG YG I + +RD T F+ + A+ A+ LN
Sbjct: 221 TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 132 (51.5 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 48/177 (27%), Positives = 78/177 (44%)
Query: 254 GGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-- 311
GG + + G ++G + + L V + N+ E K+LF GDI +
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 312 ---KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVF 368
+ G+ ++Y D A A+ L L+ + + + Y+ P + S +DAN L V
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS-SASIRDAN---LYVS 130
Query: 369 NLDSSVSTEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
L ++S +E+ Q+F YG I R + D T FI F AE A++ LN
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 97 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
Score = 114 (45.2 bits), Expect = 0.00048, P = 0.00048
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE---IRD--TQHKHNHKF 403
S P D+ + +D+ L+V L +++ EEL +FG GEI +RD T + F
Sbjct: 26 SSPVDSGNTEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 404 IEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439
+ + D + AE A+ TLN + K IK+ +RP A
Sbjct: 85 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 120
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 132 (51.5 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 38/160 (23%), Positives = 78/160 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L LF FG+I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 337 KPLRRRKLDI-HYSIPKDNPSE-KDANQGTLV-VF--NLDSSVSTEELHQIFGIYG---E 388
L R++ + + P++ +E + ++ T VF N + + E+L +IF YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTES 227
Query: 389 IREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGK 427
++ IRD K F+ + AA+ A+ L+ + GK
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGK 267
>UNIPROTKB|C9IZL7 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590762 HGNC:HGNC:7871 HOGENOM:HOG000231095
IPI:IPI00645966 ProteinModelPortal:C9IZL7 SMR:C9IZL7 STRING:C9IZL7
PRIDE:C9IZL7 Ensembl:ENST00000454976 ArrayExpress:C9IZL7
Bgee:C9IZL7 Uniprot:C9IZL7
Length = 207
Score = 125 (49.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 173 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 136 (52.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 39/159 (24%), Positives = 76/159 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KH--RGFVMISYYDIRAARNAMKALQN 336
+F++N+ ++++ L F FG+I + AC +H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDANQ---GTLVVFNLDSSVSTEELHQIFGIYGE---I 389
L RK+ + H+ ++ +E A + V NL V + L +F +G+ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 390 REIRDTQ-HKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427
+ +RD H F+ F A+ A+ +N +V+G+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 492 RSPAIALTESHQTSS-VPNGLPSLARVGSIGKQ 523
R P ++ Q S+ VP +P RV +IG Q
Sbjct: 455 RRPPAHISSVRQASTQVPRTVPHTQRVANIGTQ 487
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 112 (44.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRA 326
Y P+ +LFVRN+ + +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG 363
A +A+ L K + R+++I ++ + P++ A +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
Score = 42 (19.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 749 RSPQQICHLFPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHAD 794
++P Q+ GRN S + R R+ SY R S S D
Sbjct: 91 KTPNQM-KAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFD 135
>UNIPROTKB|G4MVL2 [details] [associations]
symbol:MGG_08898 "Differentiation regulator" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0043581 EMBL:CM001232 InterPro:IPR018835 Pfam:PF10378
RefSeq:XP_003713928.1 ProteinModelPortal:G4MVL2
EnsemblFungi:MGG_08898T0 GeneID:2679884 KEGG:mgr:MGG_08898
Uniprot:G4MVL2
Length = 806
Score = 136 (52.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 94/355 (26%), Positives = 151/355 (42%)
Query: 256 VSNQGVSAGSVV-GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-YTACKH 313
++ Q V+A +V +RT+++ NI+ E+ + G + I Y KH
Sbjct: 408 LAQQSVAAAAVATSAGGLNNLGNRTIYLGNIHPETTIEEICNVVRG-GLLHHIRYIPDKH 466
Query: 314 RGFVMISYYDIRAARN--AMKALQNKPLRRRKLDIHYSIPKDN--PSEKDANQG----TL 365
FV ++ D AA + A+ LQ + R+L I + P+ A G +
Sbjct: 467 ICFV--TFIDPTAAASFYALSNLQGLMIHNRRLKIGWGKHSGALPPAIALAVSGGASRNV 524
Query: 366 VVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425
+ NLD + + E L Q F YGEI E+ +T + + F+ F +I A A+ + D
Sbjct: 525 YIGNLDETWTEERLRQDFSEYGEI-ELVNTLREKSCAFVNFTNIANAIKAIEAVRSKDEY 583
Query: 426 GK-QIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSI 484
K ++ R G A R M Q +Q Q + IP ++ + TS +
Sbjct: 584 RKFKVNFGKDRCGNAPRQMQQGQQAQSPRSE-GIPSPPPNATSHSGNSPTTSNPPASAP- 641
Query: 485 QVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQ---FGHY--EPN-LSLDEMKF 538
L +A +P + + SH + V N S + + +Q FG PN L L E+
Sbjct: 642 PALFNANNNP-LTMYLSHVSQQV-NQQHSQQQQALMNQQAALFGTAASSPNDLGL-EVPQ 698
Query: 539 GNQHPSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVS 593
G Q P S S++NG N P++ A A ++G + G S+H R VS
Sbjct: 699 GPQSAGHQPSS------SISNGFIGNGPAS-ASGAPTIGGLLAPGR-SQHNRAVS 745
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 131 (51.2 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 37/160 (23%), Positives = 78/160 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L LF FG+I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 337 KPLRRRKLDI-HYSIPKDNPSE-KDANQGTLV-VF--NLDSSVSTEELHQIFGIYG---E 388
L R++ + + P++ +E + ++ T VF N+ + E+L ++F YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTES 227
Query: 389 IREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGK 427
++ IRD K F+ + AA+ A+ L+ + GK
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 98 (39.6 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IYT---ACKHRGFVMISYYDIRAARN 329
E S LFV N++ NV + L FEQFG++ I T + RGF + + + A
Sbjct: 273 EGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAK 332
Query: 330 AMKALQNKPLRRRKLDIHYSIPKDNPSEKD 359
A +A++ + RK+++ Y+ + P+ KD
Sbjct: 333 AYEAMKEHEIDGRKINLDYATGR--PANKD 360
Score = 84 (34.6 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIR-----DTQHKHNHKFIEFYDIRAAETALRT 418
TL V NL S + + +H++FG G + IR ++ ++++ + A A
Sbjct: 385 TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNE 444
Query: 419 LNRSDVAGKQIKLEASRP 436
L +++ G+ I+L+ S P
Sbjct: 445 LQGAEIDGRPIRLDFSTP 462
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 130 (50.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 57/225 (25%), Positives = 94/225 (41%)
Query: 236 ELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPY-----GEHPS-RTLFVRNINSNV 289
E+ G+D F +D G + +AGS G G+ R LFV ++
Sbjct: 10 EINGED--FTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWET 67
Query: 290 EDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344
+ EL+ F ++G+I +I + RGF I + + A + + A + +K+
Sbjct: 68 TEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI-DKVSAADEHIINSKKV 126
Query: 345 DIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR---DTQHKHNH 401
D P + A G + V L + +S EE+ FG +G I E+ D Q K
Sbjct: 127 D---------PKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQ-KSQR 176
Query: 402 K---FIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFM 443
K FI F D T L + +AGK++ ++ + P + M
Sbjct: 177 KGFCFITF-DSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMM 220
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 109 (43.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAG 426
++ F+ A A+R L+ ++ G
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQG 138
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 109 (43.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAG 426
++ F+ A A+R L+ ++ G
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQG 138
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 130 (50.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 37/160 (23%), Positives = 77/160 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L LF FG+I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 337 KPLRRRKLDI-HYSIPKDNPSE-KDANQGTLV-VF--NLDSSVSTEELHQIFGIYG---E 388
L R++ + + P++ +E + ++ T VF N + E+L ++F YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTES 227
Query: 389 IREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGK 427
++ IRD K F+ + AA+ A+ L+ + GK
Sbjct: 228 VKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGK 267
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 133 (51.9 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 42/182 (23%), Positives = 85/182 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FG+I + C +G+ + + AA A++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDAN--QGTLV-VFNLDSSVSTEELHQIFGIYGEIREI 392
L RK+ + + K+ +E A + T V + N + E+L +IF YG I
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSI 220
Query: 393 R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQ 448
R D+ F+ F A+ A+ +N ++ GKQ+ + ++ G R+ ++ +
Sbjct: 221 RVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKF 280
Query: 449 EQ 450
EQ
Sbjct: 281 EQ 282
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-----RDTQHKHNHKFIEFYDIRAAET 414
+++G L V L + + L Q+F YG+I E+ R+TQ F+ F +I A+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 415 ALRTLNRSDVAGKQIKLEAS-RP 436
A+ +N V G+QI+++ RP
Sbjct: 63 AMMAMNGKSVDGRQIRVDQPLRP 85
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 131 (51.2 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 60/246 (24%), Positives = 108/246 (43%)
Query: 222 DLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQ---GVSAGSVVGEHPYGEHPSR 278
D F +++ G++ G+ A Q+N GGV +A + E G PSR
Sbjct: 109 DPAQFQQYAAANGLQFPGN----ANQQNFGAAGGVPPPPPPAPTANATSAESAGG--PSR 162
Query: 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTACKH------RGFVMISYYDIRAARNAMK 332
F+ ++ + + L + F+++G+I YT K RGF +++ D ++ +K
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNI-VDYTIMKDSATGRSRGFGFLTFEDAKSVDALLK 221
Query: 333 ALQNKPLRRRKLDIHYSIPKDNPSEKDANQ-GTLVVFNLDSSVSTEELHQIFGIYGEIRE 391
R LD PK S++D + G + V +D V+ EE F +G+I +
Sbjct: 222 D-------RHVLDGKLIDPKRAISKEDQEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIID 274
Query: 392 I-----RDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA--RRFMV 444
+DT F+ YD AA + + GK ++++ + P G ++ M+
Sbjct: 275 CQLMIDKDTGRSRGFGFVT-YDSPAAVDKVCVNKYLTLKGKAMEVKRAAPRGQHNQQVMM 333
Query: 445 QSEQEQ 450
Q +Q+Q
Sbjct: 334 QQQQQQ 339
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 129 (50.5 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 49/164 (29%), Positives = 78/164 (47%)
Query: 269 EHPYGEHPSRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYY 322
E P G S+T L V + N+ ELK+LF G+I + + G+ ++Y
Sbjct: 58 EMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYM 117
Query: 323 DIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQI 382
+ + A A+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+
Sbjct: 118 EPKDAEKAINTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQL 173
Query: 383 FGIYGEI---REIRD--TQHKHNHKFIEFYDIRA-AETALRTLN 420
F +G I R + D T FI F D R AE A++ LN
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRF-DRRVEAEEAIKGLN 216
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 138 (53.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 40/166 (24%), Positives = 80/166 (48%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHR------GFVMISYYDIRAA 327
E+ S +L+V ++ +V ++ L +F G + +I C+ G+ +++ D A
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSI-RVCRDAITKTSLGYAYVNFNDHEAG 92
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
R A++ L P++ R I +S + +PS + G + + NL + + L+ F ++G
Sbjct: 93 RKAIEQLNYTPIKGRLCRIMWS--QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG 150
Query: 388 EIREIR-DTQHKHNHK---FIEFYDIRAAETALRTLNRSDVAGKQI 429
+I + T K F+ F + AA+ A+ LN + G++I
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196
Score = 41 (19.5 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 590 RGVSSNG---HLMEPTGGVFGSPRNG 612
RGV NG M P GG+ P+NG
Sbjct: 449 RGVPFNGPNPQQMNPMGGM---PKNG 471
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 107 (42.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 25/120 (20%), Positives = 61/120 (50%)
Query: 316 FVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVS 375
+ + +Y+ R A A+ A+ + + +++ ++++ + + +N + V +L ++
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 376 TEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430
TE++ F +G+I R ++D T + F+ FY+ AE A+ + + G+QI+
Sbjct: 71 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 107 (42.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-----RDTQHKHNHKFIEFYDIRAAET 414
+++G L V L + + L Q+F YG+I E+ R+TQ F+ F +I A+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 415 ALRTLNRSDVAGKQIKLE 432
A+ +N V G+QI+++
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 132 (51.5 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 50/210 (23%), Positives = 92/210 (43%)
Query: 247 QKNSDFVGGVSNQGVSAGSVVGEHPYGE-HPSRTLFVRNINSNVEDSELKALFEQFGDIR 305
Q+ ++GG + A + G+ P++ ++ NIN + E++ LF QFG ++
Sbjct: 146 QQQGGYMGG-NGPNQMAPHYQNKGAGGQLEPTKIVWAGNINPESTEEEVRHLFSQFGYLQ 204
Query: 306 TIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY----SIPKDN------- 354
I ++ I++ D+ A A L R L + + + P+ N
Sbjct: 205 AI-KIIPNKQCAFITFADVNCAIQAQFNLNGTIFRGLPLKLGFGKVENAPQANFGGGRFD 263
Query: 355 ----PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIR 410
P +++ L + N++S+VS E L QIF +G + IR H F+ F+ +
Sbjct: 264 QYNKPHQEETPTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIR-ILHGRGCAFVNFFTVE 322
Query: 411 AAETALRTLNRSDVAGKQIKLEASRPGGAR 440
+A A LN + V G +K+ + +R
Sbjct: 323 SAAAARNGLNGTMVCGMPLKINFRKEEDSR 352
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 130 (50.8 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 42/176 (23%), Positives = 81/176 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGD-------IRTIYTACKHRGFVMISYYDIRAARNAMK 332
LF+ NI N + E + + E G I+ ++RGF + YY+ A + +
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 333 AL--QNKPLRRRKLDIHYSIPKDNP--SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE 388
+ N L + ++ PK +P S A L V N+ + STE+L ++F +GE
Sbjct: 258 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGE 317
Query: 389 IREIRDTQHKHNHK---FIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
+ +I K + F+ + + +A A++ R +V G+ +++ ++P R+
Sbjct: 318 VTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 141 (54.7 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 43/177 (24%), Positives = 84/177 (47%)
Query: 262 SAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-----YTACKHRGF 316
+AG+ + + +L+V ++++ V DS+L F Q G + ++ T + G+
Sbjct: 29 AAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGY 88
Query: 317 VMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVST 376
++Y + A A+ L L R + + YS+ +D PS + + G + + NLD S+
Sbjct: 89 GYVNYATPQDASRALNELNFMALNGRAIRVMYSV-RD-PSLRKSGVGNIFIKNLDKSIDH 146
Query: 377 EELHQIFGIYGEIREIR---DTQ-HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
+ LH+ F +G I + D + F+++ AA+ A+ LN + KQ+
Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 39 (18.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 427 KQIKLEASRPGGARRFMVQSEQE 449
+Q + + RPGG RR + Q+
Sbjct: 493 QQQQQQQQRPGGGRRGALPQPQQ 515
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 132 (51.5 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 47/186 (25%), Positives = 83/186 (44%)
Query: 257 SNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG---DIRTIYTACKH 313
S+ S+ S + E P E RT+FV ++ N+ + +L LF Q G ++R I
Sbjct: 246 SSSTTSSSSTLPE-PDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTK 304
Query: 314 R----GFVMISYYDI--RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVV 367
R G+V S ++ +A + L + + + + K N + + + V
Sbjct: 305 RMKGVGYVEFSQKEMVDKAIALSGSVLDGQQILVHSIQPEKKVIKSNSTGSSGGESRIYV 364
Query: 368 FNLDSSVSTEELHQIFGIYGEIR--EIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425
+ SV+ E++ IF YG+I I + FI+F +A+ A+ LN ++
Sbjct: 365 GYIHLSVAEEQIRVIFQPYGDIDFINIHTKPGISKYAFIQFKTQESAKRAITELNGYELM 424
Query: 426 GKQIKL 431
GK +KL
Sbjct: 425 GKNLKL 430
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 128 (50.1 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 48/156 (30%), Positives = 74/156 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDI------RTIYTACKHRGFVMISYYDIRAARN 329
S+T L V + N+ ELK+LF G+I R T + G+ ++Y D + A
Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEK 123
Query: 330 AMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI 389
A+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 390 ---REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 180 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 215
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 131 (51.2 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 42/187 (22%), Positives = 85/187 (45%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KH--RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FG+I + C +H RG+ + + AA A++ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDAN--QGTLV-VFNLDSSVSTEELHQIFGIYGEIREI 392
L RK+ + H+ ++ E A + T V + N + + L +IF +G +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 393 R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL-----EASRPGGARRFM 443
+ DT F+ + + A+ A+ +N +V G+ I + R G +R
Sbjct: 221 KVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKF 280
Query: 444 VQSEQEQ 450
Q +QE+
Sbjct: 281 EQIKQER 287
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 115 (45.5 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK A+F QFG I I + K RG + + ++ +A N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++++Q P + + I Y+
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 54 (24.1 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
+P P ++ L + NL + L +F + +E+R +H+ F+EF
Sbjct: 194 MPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 250
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 112 (44.5 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRA 326
Y P+ +LFVRN+ + +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG 363
A +A+ L K + R+++I ++ + P++ A +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
Score = 42 (19.8 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 749 RSPQQICHLFPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHAD 794
++P Q+ GRN S + R R+ SY R S S D
Sbjct: 91 KTPNQM-KAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFD 135
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 115 (45.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK A+F QFG I I + K RG + + ++ +A N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++++Q P + + I Y+
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 54 (24.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
+P P ++ L + NL + L +F + +E+R +H+ F+EF
Sbjct: 195 MPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 251
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 115 (45.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK A+F QFG I I + K RG + + ++ +A N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++++Q P + + I Y+
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 54 (24.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
+P P ++ L + NL + L +F + +E+R +H+ F+EF
Sbjct: 195 MPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 251
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 115 (45.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK A+F QFG I I + K RG + + ++ +A N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++++Q P + + I Y+
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 54 (24.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
+P P ++ L + NL + L +F + +E+R +H+ F+EF
Sbjct: 195 MPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 251
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 131 (51.2 bits), Expect = 0.00010, P = 0.00010
Identities = 38/183 (20%), Positives = 87/183 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH----RGFVMISYYDIRAARNAMKALQ 335
+F++N++ +++ L F FG I + A +G+ + + + +A A++ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 336 NKPLRRRKLDI-HYSIPKDNPSEKDA---NQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391
L +K+ + H+ ++ S+ +A N + + NLD+ ++ +E +FG +GEI
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 392 ---IRDTQHK-HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSE 447
++D K F+ + + A+ A+ LN + GK++ + ++ R ++
Sbjct: 290 LSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKR 349
Query: 448 QEQ 450
EQ
Sbjct: 350 YEQ 352
Score = 124 (48.7 bits), Expect = 0.00059, P = 0.00059
Identities = 37/160 (23%), Positives = 74/160 (46%)
Query: 271 PYGEHP-SRTLFVRNINSNVEDSELKALFEQFG---DIRTIYTACKHR--GFVMISYYDI 324
P G P S +L+V ++ +V ++ L LF G IR A R G+ ++++++
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 325 RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFG 384
A+ L ++ R I +S + +PS + G + + NLD ++ + LH F
Sbjct: 132 EDGEKALDELNYTLIKGRPCRIMWS--QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFS 189
Query: 385 IYGEIREIR----DTQHKHNHKFIEFYDIRAAETALRTLN 420
+G+I + + + + F+ F + +A A+ +N
Sbjct: 190 AFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK A+F QFG I I + K RG + + ++ +A N
Sbjct: 12 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 71
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++++Q P + + I Y+
Sbjct: 72 ALRSMQGFPFYDKPMRIQYA 91
Score = 54 (24.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
+P P ++ L + NL + L +F + +E+R +H+ F+EF
Sbjct: 198 MPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 254
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 131 (51.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 315 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 374
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 375 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMNEMNGKEIEGEE 431
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 432 IEIVLAKPPDKKR 444
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 129 (50.5 bits), Expect = 0.00011, P = 0.00011
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 127 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 186
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 187 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 243
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 244 IEIVLAKPPDKKR 256
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFY 407
Y P+ E D N T+ V LD +V+ E L Q+F YGE+ ++ K F++F
Sbjct: 267 YQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCG-FVQFG 325
Query: 408 DIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQ 450
+AE AL +LN + + G+ I+L R ++ Q++Q Q
Sbjct: 326 TRASAEQALSSLNGTQLGGQSIRLSWGRSPSSK----QTDQTQ 364
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 109 (43.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTI--YTACKHRGFVMISYYDIRAARN 329
P++T+++ N+N V+ ELK A+F QFG I I + KH+G + + + +A
Sbjct: 16 PNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESAST 75
Query: 330 AMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLV 366
A+ + N P +++ I Y+ K + K GT V
Sbjct: 76 AIAKMNNFPFYDKEMRIQYAKTKSDVVAKA--DGTFV 110
Score = 58 (25.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 352 KDNPSEKDANQGTLV-VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIR 410
K N E A ++ V NL + L +F Y +E+R + K F+EF D
Sbjct: 165 KPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEM 224
Query: 411 AAETALRTLNRSDVAGKQI 429
+ A++ L + Q+
Sbjct: 225 QSTVAMQGLQGFKIQQNQM 243
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 131 (51.2 bits), Expect = 0.00011, P = 0.00011
Identities = 35/133 (26%), Positives = 68/133 (51%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D + A A + L + ++ + + ++ P ++P E A L V
Sbjct: 348 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKVKVLFVR 407
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL +SV+ E L + FG +G + ++ + ++ F+ F D A AL +N ++ G+
Sbjct: 408 NLANSVTEEILEKAFGQFGNLERVKKLK---DYAFVHFNDRDGAVKALTEMNGKELEGEH 464
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 465 IEIVFAKPPDQKR 477
>UNIPROTKB|Q9GRX4 [details] [associations]
symbol:nonA "Protein no-on-transient A" species:47316
"Drosophila littoralis" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0007601
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0050896 InterPro:IPR012975
Pfam:PF08075 EMBL:AJ296178 ProteinModelPortal:Q9GRX4 PRIDE:Q9GRX4
FlyBase:FBgn0043410 Uniprot:Q9GRX4
Length = 698
Score = 131 (51.2 bits), Expect = 0.00011, P = 0.00011
Identities = 54/196 (27%), Positives = 90/196 (45%)
Query: 230 SSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNV 289
S GG GDD A + S + G +++ + V E + L+V N+ +++
Sbjct: 238 SGGGNNSQRGDDFFIAQRLRS--ISGPTHE-LPPIEVAQETKFSGR--NRLYVGNLTNDI 292
Query: 290 EDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348
D EL+ +F+ +G+I I++ K+ F+ + Y+ I A + A +AL + R+L + +
Sbjct: 293 TDEELREMFKPYGEIGEIFSNLEKNFTFLKVDYH-INAEK-AKRALDGSMRKGRQLRVRF 350
Query: 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR---DTQHKH-NHKFI 404
+ P N L V NL VS E L++ F I+G I D + KH +
Sbjct: 351 A-P---------NATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDDRGKHLGEGTV 400
Query: 405 EFYDIRAAETALRTLN 420
EF +A LR N
Sbjct: 401 EFAKKSSASACLRLCN 416
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 36/160 (22%), Positives = 77/160 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L LF FG I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 337 KPLRRRKLDI-HYSIPKDNPSE-KDANQGTLV-VF--NLDSSVSTEELHQIFGIYG---E 388
L R++ + + P++ +E + ++ T VF N + ++L ++F YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTES 227
Query: 389 IREIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGK 427
++ IRD+ K F+ + AA+ A+ L+ + GK
Sbjct: 228 VKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 48/163 (29%), Positives = 80/163 (49%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
+F+ N+ E ELK+LF Q+G + T K+ FV + D R ++A KA++N L
Sbjct: 4 IFIGNLPQQAEVDELKSLFSQYGTV-TECAIIKNFAFV---HMDDR--KSATKAIKN--L 55
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGT--LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH 397
KL + P + + + NQG L V N++ +EL +F YG + E +
Sbjct: 56 HLYKL---HGTPINVEASRGKNQGPVKLHVANVEKGTD-DELRALFEDYGTVAECAIIK- 110
Query: 398 KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI--KLEASRPGG 438
N F+ + A A++ L+ ++ GK+I ++ SRP G
Sbjct: 111 --NFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQISKSRPRG 151
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 129 (50.5 bits), Expect = 0.00013, P = 0.00013
Identities = 43/177 (24%), Positives = 86/177 (48%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDI---RTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
L+V+N++S++ S L+ +F FG I + + + +GF + + ++A +A AL
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 337 KPLRRRKLDIHYSIPKDNPSEKDANQGTLVVF--NLDSSVSTEELHQIFGIYGEIREI-- 392
+ +KL + I KD + NQ + V+ NL +V+ + LH +F YG + +
Sbjct: 174 SMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV 233
Query: 393 -RDTQHK-HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSE 447
RD + F+ F + A+ A+ +L + K++ + + RR M++ +
Sbjct: 234 MRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQK 290
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 129 (50.5 bits), Expect = 0.00015, P = 0.00015
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 249 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 308
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 309 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 365
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 366 IEIVLAKPPDKKR 378
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 129 (50.5 bits), Expect = 0.00015, P = 0.00015
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 346
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 347 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 403
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 404 IEIVLAKPPDKKR 416
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 32/128 (25%), Positives = 68/128 (53%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 256 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 315
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 316 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 372
Query: 429 IKLEASRP 436
I++ ++P
Sbjct: 373 IEIVLAKP 380
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 110 (43.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ NIN ++ ELK ALF QFG + I K RG + + ++ ++ N
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 65 ALRQLQGFPFYGKPMRIQYA 84
Score = 53 (23.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 349 SIPKDNPSEKDA--NQGTLVVF--NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFI 404
S P +P + N ++F NL + L +F + +E+R +H+ F+
Sbjct: 134 SAPGTSPQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFV 193
Query: 405 EF 406
EF
Sbjct: 194 EF 195
Score = 50 (22.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 815 LMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLP-------IDFKNKCNVGYAFINMIDPR 867
L + N+P + T++M+L+ + G + +P ++F+N+C G A + +
Sbjct: 154 LFLNNLPEE-TNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENECQAGAAR-DALQGF 211
Query: 868 QIIPFH 873
+I P H
Sbjct: 212 KITPSH 217
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 126 (49.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDI---RTIYTACKHRGFVMISYYDIRAARNAMKALQN 336
+F++N+ +++++ L F FG I + +Y RGF + + AA+ A+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDANQ-G--TLVVFNLDSSVSTEELHQIFGIYGE---I 389
L RK+ + H+ + +E A G + V NL + + L +F +G+ +
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSV 220
Query: 390 REIRDTQ-HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL-----EASRPGGARRFM 443
+ +RD+ FI F A+ A+ +N +V+G+ + + A R +R
Sbjct: 221 KVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRF 280
Query: 444 VQSEQEQDD 452
Q +QE+ +
Sbjct: 281 EQMKQERQN 289
Score = 51 (23.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 475 TSTCMDNGSI-QVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQ 523
+STC S+ Q L +A P I L+ + Q SS +P RV +IG Q
Sbjct: 437 SSTCPPAASVVQPLSTAPH-PCIHLSSASQASSQ---VPHTQRVVNIGTQ 482
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 346
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 347 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 403
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 404 IEIVLAKPPDKKR 416
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 346
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 347 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 403
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 404 IEIVLAKPPDKKR 416
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 346
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 347 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 403
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 404 IEIVLAKPPDKKR 416
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 346
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 347 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 403
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 404 IEIVLAKPPDKKR 416
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 312 KHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKDNPS-EKDANQGTLVVF 368
K+RGF + Y D ++A A + L + ++ + + ++ P + P E A L V
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 346
Query: 369 NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428
NL ++V+ E L + F +G++ ++ + ++ F+ F D AA A+ +N ++ G++
Sbjct: 347 NLATTVTEEILEKSFSEFGKLERVKKLK---DYAFVHFEDRGAAVKAMDEMNGKEIEGEE 403
Query: 429 IKLEASRPGGARR 441
I++ ++P +R
Sbjct: 404 IEIVLAKPPDKKR 416
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 46/176 (26%), Positives = 82/176 (46%)
Query: 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK 337
R ++V N + + S+L+ LF +FG ++ + G+ + + D R A +A++ N
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58
Query: 338 PLR--RRKLDIHYSIP----KDNPSEKDA--NQG---TLVVFNLDSSVSTE-ELHQIFGI 385
RRKL + ++ + P + A NQ TL V N D + E ++ + F
Sbjct: 59 TFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEP 118
Query: 386 YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE-ASRPGGAR 440
YG++ +R + N F++F A AL + + S + K + +E A R G R
Sbjct: 119 YGKVLNVR---MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGER 171
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 135 (52.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 40/182 (21%), Positives = 83/182 (45%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACK-H--RGFVMISYYDIRAARNAMKALQN 336
+F++N+ ++++ L F FG+I + C H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDANQ---GTLVVFNLDSSVSTEELHQIFGIYGEIREI 392
L RK+ + H+ ++ E A + V NL V + L +F +G++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSV 220
Query: 393 R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQ 448
+ D+ H F+ F A+ A+ +N +V+G+ + + ++ R+ ++
Sbjct: 221 KVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRF 280
Query: 449 EQ 450
EQ
Sbjct: 281 EQ 282
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 643 PSFLNGLHANRVAHMPGFPRVPPLMLNATSP 673
P F N + H P +P +P M TSP
Sbjct: 418 PPFKNFFSVVHLLHTPFWPSMPGCM--TTSP 446
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 96 (38.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMK 332
S +F+ +I +V + ELK ++G I +Y TA RG+ I+Y A A++
Sbjct: 6 SSKIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIE 65
Query: 333 ALQNK---PLRRRKLDIHYSIPKDNPSEKDANQG 363
AL K P +R LD+ ++ K N S DA G
Sbjct: 66 ALDYKCIFPNSQRPLDVRFASYKYNNSN-DAQGG 98
Score = 72 (30.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 25/98 (25%), Positives = 49/98 (50%)
Query: 367 VFNLDSSVSTEELHQIFGIYGEI---REIRDTQHKHN-HKFIEFYDIRAAETALRTLNRS 422
VF+L S + EL+Q F +G + R RD ++ + F+ F + +A A++ ++
Sbjct: 154 VFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMHGF 213
Query: 423 DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPF 460
V+GK +K++ + G ++ + Q L Q P+
Sbjct: 214 YVSGKHLKVQLKK--GEEHYVQMNTPAQPQLTPAQ-PY 248
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 96 (38.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMK 332
S +F+ +I +V + ELK ++G I +Y TA RG+ I+Y A A++
Sbjct: 6 SSKIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIE 65
Query: 333 ALQNK---PLRRRKLDIHYSIPKDNPSEKDANQG 363
AL K P +R LD+ ++ K N S DA G
Sbjct: 66 ALDYKCIFPNSQRPLDVRFASYKYNNSN-DAQGG 98
Score = 72 (30.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 25/98 (25%), Positives = 49/98 (50%)
Query: 367 VFNLDSSVSTEELHQIFGIYGEI---REIRDTQHKHN-HKFIEFYDIRAAETALRTLNRS 422
VF+L S + EL+Q F +G + R RD ++ + F+ F + +A A++ ++
Sbjct: 154 VFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMHGF 213
Query: 423 DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPF 460
V+GK +K++ + G ++ + Q L Q P+
Sbjct: 214 YVSGKHLKVQLKK--GEEHYVQMNTPAQPQLTPAQ-PY 248
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 49/183 (26%), Positives = 87/183 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHR-GFVMISYYDIRAARNA 330
S+T L V + N+ EL++LF G++ + H G+ ++Y + A A
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERA 91
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S KDAN L + L +++ +++ ++FG YG I
Sbjct: 92 ISTLNGLRLQSKTIKVSYARPSSD-SIKDAN---LYISGLPKTMTQKDVEEMFGRYGRII 147
Query: 390 --REIRDTQH--KHNHKFIEFYDIRA-AETALRTLN--RSDVAGKQIKLE-ASRPGGARR 441
R + D FI F D RA AE A++ LN + A +Q+ ++ A+ P +
Sbjct: 148 NSRVLVDQASGLSRGVAFIRF-DKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKN 206
Query: 442 FMV 444
V
Sbjct: 207 TQV 209
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 129 (50.5 bits), Expect = 0.00021, P = 0.00021
Identities = 40/157 (25%), Positives = 75/157 (47%)
Query: 275 HP--SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHR--GFVMISYYDIRAA 327
HP S +L+V ++ +V ++ L LF Q G + +I A R G+ ++Y
Sbjct: 56 HPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADG 115
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A++ L ++ R I +S + +P+ + QG + + NLD ++ + LH F +G
Sbjct: 116 EKALEELNYTLIKGRPCRIMWS--QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 173
Query: 388 EIREIRDTQHKH-NHK---FIEFYDIRAAETALRTLN 420
I + Q ++ N K F+ + AA A++ +N
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 210
Score = 129 (50.5 bits), Expect = 0.00021, P = 0.00021
Identities = 41/163 (25%), Positives = 75/163 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH----RGFVMISYYDIRAARNAMKALQ 335
+F++N++ +++ L F FG+I + A +G+ + Y AA A+K +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 210
Query: 336 NKPLRRRKLDIHYSIPK-DNPSEKD---ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391
L +K+ + + IPK D S+ D AN + V N++ V+ +E +F YG++
Sbjct: 211 GMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTS 270
Query: 392 ---IRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
RD T F+ F A A++ LN + G+ +
Sbjct: 271 SSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNL 313
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 126 (49.4 bits), Expect = 0.00021, P = 0.00021
Identities = 54/206 (26%), Positives = 89/206 (43%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------HRGFVMISYYDI 324
P +H + LF+ I N+++ +LK LFE+FG I + T K H+G ++Y +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCER 105
Query: 325 RAARNAMKAL-QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383
+A A AL + K L I P D+ S D L V L+ S +++ ++F
Sbjct: 106 ESALKAQSALHEQKTLPGMNRPIQVK-PADSESRGDRK---LFVGMLNKQQSEDDVRRLF 161
Query: 384 GIYGEIREIRDTQHKH-NHK---FIEFYDIRAAETALRTLNRSDV---AGKQIKLEASRP 436
+G I E + N K F+++ A+ A+ L+ S A + ++ +
Sbjct: 162 EAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 221
Query: 437 GGAR--RFMVQSEQEQDDLNLCQIPF 460
R R M Q + N IPF
Sbjct: 222 DKERTMRRMQQMAGQMGMFNPMAIPF 247
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 112 (44.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRA 326
Y P+ +LFVRN+ + +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG 363
A +A+ L K + R+++I ++ + P++ A +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 749 RSPQQICHLFPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHAD 794
++P Q+ GRN S + R R+ SY R S S D
Sbjct: 91 KTPNQM-KAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFD 135
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 94 (38.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH----RGFVMISYYDIRAARNAMKALQ 335
L +RN++ + +LK +F Q+G + + K RGF + + ++ A A+K++
Sbjct: 116 LIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMN 175
Query: 336 NKPLRRRKLDIHYSIPKD 353
K ++ R + + +++ KD
Sbjct: 176 MKEIKGRTVAVDWAVAKD 193
Score = 85 (35.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 345 DIHYSIPKDNPSEKDANQG-TLVVFNLDSSVSTEELHQIFGIYGEIREIR-----DTQHK 398
D+ S K D N+G T+ + NL EEL ++ +G+++ +R DT+H
Sbjct: 308 DMQISKKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHS 367
Query: 399 HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432
F +F AA+ L + + G +KL+
Sbjct: 368 KGCAFAQFMTQEAAQKCLEAAS-PETEGGGLKLD 400
>UNIPROTKB|Q5ZIZ5 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016363
GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:AADN02013229 EMBL:AADN02013230 EMBL:AJ720639 IPI:IPI00603370
RefSeq:NP_001026703.1 UniGene:Gga.4549 SMR:Q5ZIZ5
Ensembl:ENSGALT00000008838 GeneID:428701 KEGG:gga:428701
InParanoid:Q5ZIZ5 NextBio:20829624 Uniprot:Q5ZIZ5
Length = 473
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQFVSNELLEEAFSVFG 172
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 173 QVERAVVIVDDRGRSSGKGIVEFSGKPAARKAL 205
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 54/206 (26%), Positives = 89/206 (43%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------HRGFVMISYYDI 324
P +H + LF+ I N+++ +LK LFE+FG I + T K H+G ++Y +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCER 105
Query: 325 RAARNAMKAL-QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383
+A A AL + K L I P D+ S D L V L+ S +++ ++F
Sbjct: 106 ESALKAQSALHEQKTLPGMNRPIQVK-PADSESRGDRK---LFVGMLNKQQSEDDVRRLF 161
Query: 384 GIYGEIREIRDTQHKH-NHK---FIEFYDIRAAETALRTLNRSDV---AGKQIKLEASRP 436
+G I E + N K F+++ A+ A+ L+ S A + ++ +
Sbjct: 162 EAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 221
Query: 437 GGAR--RFMVQSEQEQDDLNLCQIPF 460
R R M Q + N IPF
Sbjct: 222 DKERTMRRMQQMAGQMGMFNPMAIPF 247
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 54/206 (26%), Positives = 89/206 (43%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------HRGFVMISYYDI 324
P +H + LF+ I N+++ +LK LFE+FG I + T K H+G ++Y +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCER 105
Query: 325 RAARNAMKAL-QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383
+A A AL + K L I P D+ S D L V L+ S +++ ++F
Sbjct: 106 ESALKAQSALHEQKTLPGMNRPIQVK-PADSESRGDRK---LFVGMLNKQQSEDDVRRLF 161
Query: 384 GIYGEIREIRDTQHKH-NHK---FIEFYDIRAAETALRTLNRSDV---AGKQIKLEASRP 436
+G I E + N K F+++ A+ A+ L+ S A + ++ +
Sbjct: 162 EAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 221
Query: 437 GGAR--RFMVQSEQEQDDLNLCQIPF 460
R R M Q + N IPF
Sbjct: 222 DKERTMRRMQQMAGQMGMFNPMAIPF 247
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 113 (44.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 367 VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426
V L S +++EL +IF +G IR++ + F+E+ D+R AE A+R L+ S + G
Sbjct: 7 VGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICG 66
Query: 427 KQIKLEAS----RPGGAR 440
+ ++E S R GG R
Sbjct: 67 VRARVELSTGQRRGGGGR 84
Score = 39 (18.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 760 GRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQ 797
GR+ S D S +R R+ S R+ S +++
Sbjct: 106 GRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRER 143
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 113 (44.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 367 VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426
V L S +++EL +IF +G IR++ + F+E+ D+R AE A+R L+ S + G
Sbjct: 7 VGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICG 66
Query: 427 KQIKLEAS----RPGGAR 440
+ ++E S R GG R
Sbjct: 67 VRARVELSTGQRRGGGGR 84
Score = 39 (18.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 760 GRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQ 797
GR+ S D S +R R+ S R+ S +++
Sbjct: 106 GRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRER 143
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 112 (44.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRA 326
Y P+ +LFVRN+ + +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG 363
A +A+ L K + R+++I ++ + P++ A +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
Score = 52 (23.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 759 PGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQ 797
P P S S D+ + RN S+ R++SNS K Q
Sbjct: 149 PTGRPRRSRSHS-DNDRFKHRNRSFSRSKSNSRSRSKSQ 186
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 112 (44.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRA 326
Y P+ +LFVRN+ + +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG 363
A +A+ L K + R+++I ++ + P++ A +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
Score = 52 (23.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 759 PGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQ 797
P P S S D+ + RN S+ R++SNS K Q
Sbjct: 149 PTGRPRRSRSHS-DNDRFKHRNRSFSRSKSNSRSRSKSQ 186
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 112 (44.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRA 326
Y P+ +LFVRN+ + +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG 363
A +A+ L K + R+++I ++ + P++ A +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
Score = 52 (23.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 759 PGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQ 797
P P S S D+ + RN S+ R++SNS K Q
Sbjct: 149 PTGRPRRSRSHS-DNDRFKHRNRSFSRSKSNSRSRSKSQ 186
>GENEDB_PFALCIPARUM|PFL1200c [details] [associations]
symbol:PFL1200c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEIREIR--DTQHKHNHKFIEFYDIRAAETALRTLNRS 422
L V NL +S +EL+ IFG YG +R+IR + + F+ + DI A+ AL L+
Sbjct: 16 LYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLSGF 75
Query: 423 DVAGKQI 429
+VAG+ +
Sbjct: 76 NVAGRYL 82
>UNIPROTKB|Q8I5G8 [details] [associations]
symbol:PFL1200c "Splicing factor 3b subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEIREIR--DTQHKHNHKFIEFYDIRAAETALRTLNRS 422
L V NL +S +EL+ IFG YG +R+IR + + F+ + DI A+ AL L+
Sbjct: 16 LYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLSGF 75
Query: 423 DVAGKQI 429
+VAG+ +
Sbjct: 76 NVAGRYL 82
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 97 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 110 (43.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 277 SRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARNA 330
+ T+++ N+N ++ ELK A+F QFG I I + K +G + + +I +A NA
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNA 68
Query: 331 MKALQNKPLRRRKLDIHYS 349
++++Q P + + I YS
Sbjct: 69 LRSMQGFPFYDKPMRIQYS 87
Score = 55 (24.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 350 IPKDNPSEKDANQGTLVVF--NLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
+P P + N ++F NL + L +F + +E+R +H+ F+EF
Sbjct: 192 MPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 250
>UNIPROTKB|Q2KJ42 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=ISS]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0042802 GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004 CTD:4841
HOGENOM:HOG000231095 HOVERGEN:HBG009801 KO:K13214 OrthoDB:EOG4ZCT50
EMBL:DAAA02072840 EMBL:BC105532 IPI:IPI00699994
RefSeq:NP_001040019.1 UniGene:Bt.37860 SMR:Q2KJ42
Ensembl:ENSBTAT00000016122 GeneID:615175 KEGG:bta:615175
InParanoid:Q2KJ42 NextBio:20899485 Uniprot:Q2KJ42
Length = 470
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 172 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 204
>UNIPROTKB|F1PTP3 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 CTD:4841 KO:K13214
OMA:NQQYHKE EMBL:AAEX03026487 RefSeq:XP_849110.1
ProteinModelPortal:F1PTP3 Ensembl:ENSCAFT00000027037 GeneID:612773
KEGG:cfa:612773 Uniprot:F1PTP3
Length = 470
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 172 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 204
>UNIPROTKB|F1Q0F6 [details] [associations]
symbol:F1Q0F6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03010245
ProteinModelPortal:F1Q0F6 Ensembl:ENSCAFT00000005152 OMA:LEFEMES
Uniprot:F1Q0F6
Length = 470
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 172 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 204
>UNIPROTKB|Q15233 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0042382 "paraspeckles"
evidence=IDA] [GO:0005634 "nucleus" evidence=TAS] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0016607 GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0006310 GO:GO:0016363
EMBL:CH471132 Pathway_Interaction_DB:circadianpathway GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586 EMBL:L14599
EMBL:U89867 EMBL:Y11289 EMBL:Y11290 EMBL:Y11291 EMBL:Y11292
EMBL:Y11293 EMBL:Y11294 EMBL:Y11295 EMBL:Y11296 EMBL:Y11297
EMBL:Y11298 EMBL:U02493 EMBL:AK297144 EMBL:CR456761 EMBL:AL590762
EMBL:BC002364 EMBL:BC003129 EMBL:BC012141 EMBL:BC028299
EMBL:BC069616 EMBL:BC069639 IPI:IPI00304596 IPI:IPI00922367
PIR:G01211 PIR:S29769 PIR:S41768 RefSeq:NP_001138880.1
RefSeq:NP_001138881.1 RefSeq:NP_001138882.1 RefSeq:NP_031389.3
UniGene:Hs.533282 UniGene:Hs.700344 PDB:3SDE PDBsum:3SDE
ProteinModelPortal:Q15233 SMR:Q15233 DIP:DIP-29951N IntAct:Q15233
MINT:MINT-1131452 STRING:Q15233 PhosphoSite:Q15233 DMDM:67469924
REPRODUCTION-2DPAGE:IPI00304596 SWISS-2DPAGE:Q15233 PaxDb:Q15233
PeptideAtlas:Q15233 PRIDE:Q15233 DNASU:4841 Ensembl:ENST00000276079
Ensembl:ENST00000373841 Ensembl:ENST00000373856
Ensembl:ENST00000535149 GeneID:4841 KEGG:hsa:4841 UCSC:uc004dzn.3
CTD:4841 GeneCards:GC0XP070503 HGNC:HGNC:7871 HPA:CAB022069
MIM:300084 neXtProt:NX_Q15233 PharmGKB:PA31680 HOGENOM:HOG000231095
HOVERGEN:HBG009801 InParanoid:Q15233 KO:K13214 OMA:NQQYHKE
OrthoDB:EOG4ZCT50 PhylomeDB:Q15233 GenomeRNAi:4841 NextBio:18654
PMAP-CutDB:Q15233 ArrayExpress:Q15233 Bgee:Q15233 CleanEx:HS_NONO
Genevestigator:Q15233 GermOnline:ENSG00000147140 Uniprot:Q15233
Length = 471
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 173 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>UNIPROTKB|I3LSU1 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE Ensembl:ENSSSCT00000031783
Uniprot:I3LSU1
Length = 471
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 173 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>MGI|MGI:1855692 [details] [associations]
symbol:Nono "non-POU-domain-containing, octamer binding
protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0042802 "identical protein binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1855692 GO:GO:0005730 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0016607
GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0006310 GO:GO:0016363 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOVERGEN:HBG009801 KO:K13214
OrthoDB:EOG4ZCT50 EMBL:S64860 EMBL:AK004830 EMBL:AK013444
EMBL:AK028338 EMBL:BC005465 EMBL:BC083074 IPI:IPI00320016
IPI:IPI00471251 RefSeq:NP_001239447.1 RefSeq:NP_075633.2
UniGene:Mm.280069 PDB:2CPJ PDB:2RS8 PDBsum:2CPJ PDBsum:2RS8
ProteinModelPortal:Q99K48 SMR:Q99K48 IntAct:Q99K48 STRING:Q99K48
PhosphoSite:Q99K48 PaxDb:Q99K48 PRIDE:Q99K48
Ensembl:ENSMUST00000033673 GeneID:53610 KEGG:mmu:53610
UCSC:uc009txr.2 InParanoid:Q99K48 ChiTaRS:NONO
EvolutionaryTrace:Q99K48 NextBio:310319 Bgee:Q99K48
Genevestigator:Q99K48 GermOnline:ENSMUSG00000031311 Uniprot:Q99K48
Length = 473
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 68 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 124
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 125 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 174
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 175 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 207
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 124 (48.7 bits), Expect = 0.00029, P = 0.00029
Identities = 49/188 (26%), Positives = 80/188 (42%)
Query: 249 NSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308
NS G S+ S S + + L V + N+ E ++LF G+I +
Sbjct: 59 NSATANGPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK 118
Query: 309 TAC-----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQG 363
+ G+ ++Y D + A A+ L L+ + + + Y+ P + S +DAN
Sbjct: 119 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS-SASIRDAN-- 175
Query: 364 TLVVFNLDSSVSTEELHQIFGIYGEI---REIRD--TQHKHNHKFIEFYDIRAAETALRT 418
L V L +++ +EL Q+F YG I R + D T FI F AE A++
Sbjct: 176 -LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 419 LNRSDVAG 426
LN +G
Sbjct: 235 LNGQKPSG 242
>RGD|1549738 [details] [associations]
symbol:Nono "non-POU domain containing, octamer-binding"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA;ISO]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1549738 GO:GO:0005730 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006310 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:BC089880 IPI:IPI00205912 RefSeq:NP_001012356.1 UniGene:Rn.8381
ProteinModelPortal:Q5FVM4 SMR:Q5FVM4 IntAct:Q5FVM4 STRING:Q5FVM4
PhosphoSite:Q5FVM4 PRIDE:Q5FVM4 Ensembl:ENSRNOT00000004911
GeneID:317259 KEGG:rno:317259 UCSC:RGD:1549738 InParanoid:Q5FVM4
NextBio:671515 Genevestigator:Q5FVM4 GermOnline:ENSRNOG00000003689
Uniprot:Q5FVM4
Length = 476
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 71 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 127
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 128 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 177
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 178 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 210
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 123 (48.4 bits), Expect = 0.00030, P = 0.00030
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 97 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 123 (48.4 bits), Expect = 0.00030, P = 0.00030
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 97 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 124 (48.7 bits), Expect = 0.00031, P = 0.00031
Identities = 63/328 (19%), Positives = 137/328 (41%)
Query: 268 GEHPYGEHPS--RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDI 324
G P G PS R+++V NI++ V + L+ +F G + + K + + + Y+D
Sbjct: 47 GNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDR 106
Query: 325 RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFG 384
R+A A+ +L + L + + ++++ E ++ + V +L V+ L+Q F
Sbjct: 107 RSAALAILSLNGRHLFGQPIKVNWAYATGQ-REDTSSHFNIFVGDLSPEVTDATLYQSFS 165
Query: 385 IYGEIREIR---D--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439
++ + R D T F+ F + + A+TA+ +N ++ +QI+ + G
Sbjct: 166 VFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGAT 225
Query: 440 RRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIALT 499
+ D ++ ++ G+ + T +N ++ +P +
Sbjct: 226 SG---DDKLSSDGKSVVELTTGSSEDGKETLN---EETPENNSQFTTVYVGNLAPEVTQL 279
Query: 500 ESHQT-SSVPNGLPSLARVGSIGKQFG--HYE--PNLSLDEMKFGNQHPSFHPHSL---- 550
+ H+ ++ G+ RV K FG Y P +L ++ GN P +
Sbjct: 280 DLHRYFHALGAGVIEEVRVQR-DKGFGFVRYNTHPEAAL-AIQMGNTQPYLFNRQIKCSW 337
Query: 551 ---PEYHDSLANGLPYNSPSTIADIASS 575
P + +N LP +P+ + ++++
Sbjct: 338 GNKPTPPGTASNPLPPPAPAPVPGLSAA 365
>UNIPROTKB|G3N361 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE EMBL:DAAA02072840
Ensembl:ENSBTAT00000063337 Uniprot:G3N361
Length = 528
Score = 125 (49.1 bits), Expect = 0.00034, P = 0.00034
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAA 327
GE + + SR LFV N+ ++ + E++ LFE++G ++ K +GF I A
Sbjct: 123 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 179
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A L N PLR ++L + ++ + +L V NL VS E L + F ++G
Sbjct: 180 EIAKVELDNMPLRGKQLRVRFA----------CHSASLTVRNLPQYVSNELLEEAFSVFG 229
Query: 388 EIRE---IRDTQHKHNHK-FIEFYDIRAAETAL 416
++ I D + + + K +EF AA AL
Sbjct: 230 QVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 262
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 123 (48.4 bits), Expect = 0.00034, P = 0.00034
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 124
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 125 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 181 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 215
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 123 (48.4 bits), Expect = 0.00034, P = 0.00034
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 125
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 126 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 181
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 182 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 123 (48.4 bits), Expect = 0.00034, P = 0.00034
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 125
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 126 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 181
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 182 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 216
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 112 (44.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRA 326
Y P+ +LFVRN+ + +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQG 363
A +A+ L K + R+++I ++ + P++ A +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
Score = 40 (19.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 749 RSPQQICHLFPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHAD 794
++P Q+ GRN S + R R+ SY R S S D
Sbjct: 91 KTPNQM-KAKEGRNVYSSSRYDDYDRYRRSRSRSYDRRRSRSRSFD 135
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 101 (40.6 bits), Expect = 0.00035, P = 0.00035
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKAL 334
+R LFV+N++ NV EL LF +FG IR + A +G + Y D+ A+ A L
Sbjct: 12 NRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQACDKL 71
Query: 335 QNKPLRRRKLDIHYSIPKDNPSEKD 359
+ R L + Y P+ K+
Sbjct: 72 NGFNFQNRYLVVLYHQPEKMARSKE 96
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 100 (40.3 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH----RGFVMISYYDIRAARNAMKALQ 335
L +RN++ + +LK +F QFG I + K RGF + + ++ A A+K +
Sbjct: 116 LIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMN 175
Query: 336 NKPLRRRKLDIHYSIPKD 353
K ++ R + + +++ KD
Sbjct: 176 MKEIKGRTVAVDWAVAKD 193
Score = 76 (31.8 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 359 DANQG-TLVVFNLDSSVSTEELHQIFGIYGEIREIR-----DTQHKHNHKFIEFYDIRAA 412
D N+G T+ + NL E+L ++ +G+++ +R DT+H F +F AA
Sbjct: 327 DVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAA 386
Query: 413 ETALRTLNRSDVAGKQIKLE 432
+ L + + G +KL+
Sbjct: 387 QKCLEAAS-PEAEGGGLKLD 405
Score = 45 (20.9 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 788 SNSNHADKKQYELDIDRILRGDD---SRTTLMIKNIPNKYTSKMLLAAIDEHCRG 839
S ++ A ++++EL + L+ + SRT L + N+P K L + RG
Sbjct: 456 SAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLNSTRG 510
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 105 (42.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 363 GTLVVFNL-DSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421
G L+V NL D V+ + L +FG+YG+++ ++ +K + I+ D A+ A+ LN
Sbjct: 345 GVLLVSNLNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDGNQAQLAMSHLNG 404
Query: 422 SDVAGKQIKLEASR 435
+ GK I++ S+
Sbjct: 405 QKMYGKIIRVTLSK 418
Score = 68 (29.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 31/142 (21%), Positives = 56/142 (39%)
Query: 234 GMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSE 293
G++ DD L +S V+ G + + E PSR + +R + + V ++E
Sbjct: 11 GVKRSSDDLLSGSLYSSPN-SSVTANGSDSKKLRVEDSMDSPPSRVIHIRKLPNEVSETE 69
Query: 294 LKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352
+ AL FG + I K++ F+ + + +R + I YS K
Sbjct: 70 VIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYYTAVTPQVRNVPVFIQYSNHK 129
Query: 353 DNPSEKDANQGTLVVFNLDSSV 374
+ ++ NQ V S+V
Sbjct: 130 ELKTDSALNQRAQAVLQAVSAV 151
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 47/173 (27%), Positives = 79/173 (45%)
Query: 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG---FVMISYYDIRAARNAMKA- 333
RT++V +I++ V + +L +LF G + ++ F I + D AR+A++
Sbjct: 137 RTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRKS 196
Query: 334 ---LQNKPLR--RRKLDIHYSIPKDNPSEKDANQ--G-TLVVFNLDSSVSTEELHQIFG- 384
+ P+R K I P P KD + G T+ N+D V+ EL F
Sbjct: 197 GTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVYCTNIDKEVTKMELENFFKT 256
Query: 385 IYGEIREIR---DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
+ GE+ +R D H+ F+EF + AE+A+ LN S V ++ + S
Sbjct: 257 VCGEVHHLRLLGDFYHQTRIAFVEF---KLAESAISALNCSGVVLGELPIRVS 306
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 123 (48.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 62/289 (21%), Positives = 119/289 (41%)
Query: 83 RDKMKRLGIVGEEGAANLSENSWNSV---NHHPKSWSNLAVQPGIN--SLSGNRSGINGI 137
+ K K + +E A+N + V +H KSW+N + G S+ + +NG
Sbjct: 118 KQKTKSTSEIDDEIASNPKLREYMEVMKPSHQVKSWANDTIADGSGGPSVQDLENALNG- 176
Query: 138 QXXXXXXXXXXXDIFTRKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLL 197
++ S +E + L+ ++ EE +E E ++G+L
Sbjct: 177 -NNESPVDKSNIEVVNTVEDASDDEYNDFKELSNKHGENEDEE-----EEEEMMSLGDLP 230
Query: 198 PDEDDLFSGVTDDMGHNFQAN-TVDDLEDFDLFSSGGGMELEGD-DRLFAVQKNSDFVGG 255
+E++ ++ G N AN + DLE L S ++ G+ + K + V
Sbjct: 231 TNEENKDK---NESGENLAANENISDLEW--LKSRSTRIKENGEVPEIVPEVKEVNEVTE 285
Query: 256 VSNQGVSAGSVVGEHPYGEHPSRT--LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-- 311
V+ Q + + E + T LF+RNI+ + + ++LF Q+G + ++ A
Sbjct: 286 VTQQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDT 345
Query: 312 ---KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357
K +GF+ + + A A ++L + + R L I +P D +
Sbjct: 346 RTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHI---LPADKKKD 391
Score = 53 (23.7 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETAL 416
+K+ + ++V N + +E+ ++F YG+++ + IEF D +A A
Sbjct: 487 KKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRML-MPPAGTIAIIEFRDAPSARAAF 545
Query: 417 RTL 419
L
Sbjct: 546 SKL 548
Score = 45 (20.9 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 815 LMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFI 861
++IKN+P + T K LL G + +P F G+AF+
Sbjct: 719 IIIKNLPFEATRKDLLELFGAF--GQLKSVRVPKKFDQSAR-GFAFV 762
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
Identities = 36/156 (23%), Positives = 76/156 (48%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK----HR--GFVMISYYDIRAA 327
E+P +L++ +++ +V ++ L F G I +I C+ R G+ I++ A
Sbjct: 7 EYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSI-RVCRDIATRRSLGYAYINFQQPADA 65
Query: 328 RNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG 387
A+ + + ++ R + I +S + +P + + G + + NLD S+ + L+ F +G
Sbjct: 66 ERALDTMNFEVIKGRPIRIMWS--QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 388 EI---REIRDTQHKHNHKFIEFYDIRAAETALRTLN 420
+I + + D + F+ F AA A++T+N
Sbjct: 124 DILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMN 159
Score = 122 (48.0 bits), Expect = 0.00092, P = 0.00092
Identities = 39/187 (20%), Positives = 83/187 (44%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FGDI + C RG+ + + AA A++ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDAN--QGTLV-VFNLDSSVSTEELHQIFGIYGEIREI 392
L RK+ + H+ ++ E A + T V + N + + L +IF +G +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 393 R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL-----EASRPGGARRFM 443
+ ++ F+ + + A+ A+ +N +V G+ + + R G +R
Sbjct: 221 KVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKF 280
Query: 444 VQSEQEQ 450
Q +QE+
Sbjct: 281 EQIKQER 287
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 106 (42.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------HRGFVMISYYDI 324
P +H + LF+ I N+++ +LK LFE+FG I + T K H+G ++Y +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCER 105
Query: 325 RAARNAMKALQ--------NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVST 376
+A A AL N+P++ + D + + L V L+ S
Sbjct: 106 ESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSE 165
Query: 377 EELHQIFGIYGEIRE 391
+++ ++F +G I E
Sbjct: 166 DDVRRLFEAFGNIEE 180
Score = 65 (27.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 403 FIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
F+ F + +A+TA++ +N + K++K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 106 (42.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------HRGFVMISYYDI 324
P +H + LF+ I N+++ +LK LFE+FG I + T K H+G ++Y +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCER 105
Query: 325 RAARNAMKALQ--------NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVST 376
+A A AL N+P++ + D + + L V L+ S
Sbjct: 106 ESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSE 165
Query: 377 EELHQIFGIYGEIRE 391
+++ ++F +G I E
Sbjct: 166 DDVRRLFEAFGNIEE 180
Score = 65 (27.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 403 FIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
F+ F + +A+TA++ +N + K++K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 106 (42.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------HRGFVMISYYDI 324
P +H + LF+ I N+++ +LK LFE+FG I + T K H+G ++Y +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCER 105
Query: 325 RAARNAMKALQ--------NKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVST 376
+A A AL N+P++ + D + + L V L+ S
Sbjct: 106 ESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSE 165
Query: 377 EELHQIFGIYGEIRE 391
+++ ++F +G I E
Sbjct: 166 DDVRRLFEAFGNIEE 180
Score = 65 (27.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 403 FIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441
F+ F + +A+TA++ +N + K++K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
Identities = 71/303 (23%), Positives = 118/303 (38%)
Query: 245 AVQKNSDFVGGVSNQGVSAG----SVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQ 300
A Q N G SN+ S+G S+ G P + LFV ++ +LK F
Sbjct: 167 AGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGK-LFVGGLSWQTSSDKLKEYFNM 225
Query: 301 FGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355
FG + + + RGF I++ + +K + L +K+D ++ PK+ P
Sbjct: 226 FGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLK-VPIHTLDGKKIDPKHATPKNRP 284
Query: 356 SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE---IRDTQHKHNHKF----IEFYD 408
+ + + + V + S EE+ F +G + E + D Q K + F E D
Sbjct: 285 RQANKTK-KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENED 343
Query: 409 I--RAAETALRTLNRSDVAGKQIK-LEASRPGGARRFMVQSEQEQDDLNLCQIPFDDLSS 465
+ R E T+ V K+ + EA P ++Q L + Q+P +
Sbjct: 344 VVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQ---LLQKRIMLGTLGV-QLP---TAP 396
Query: 466 GQMVSS-GVITSTCMDNGSIQVLHSATRSPAIALTESHQT--SSVPNGLPSLARVGSIGK 522
GQ++ + G +T +Q +SPA A S P + + A SI
Sbjct: 397 GQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQNAAAAASIAN 456
Query: 523 QFG 525
Q G
Sbjct: 457 QAG 459
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 123 (48.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 64/238 (26%), Positives = 99/238 (41%)
Query: 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVR 283
E+ D + G G E GD+ Q N G N SAG + L +
Sbjct: 46 ENGDGGNGGDGQEHSGDEEQHHSQDNE----GNDN---SAGQQQQMQQVDRTSATNLIIN 98
Query: 284 NINSNVEDSELKALFEQFGDIRTIYTACKHR-----GFVMISYYDIRAARNAMKALQNKP 338
+ ++ D EL LF G I T + G+ + Y + +A++ L
Sbjct: 99 YLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFY 158
Query: 339 LRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI--REI-RD- 394
+R ++L + Y+ P S KD N L V NL +++ + L +IF YG I R I RD
Sbjct: 159 VRNKRLKVSYARP-GGQSIKDTN---LYVINLSRNINDDMLDRIFSPYGLIVQRNILRDK 214
Query: 395 -TQHKHNHKFIEFYDIRAAETALRTLNRS-DVAGKQ---IKLEASRPGGAR--RFMVQ 445
T F+ + A+ A++ LN + G Q ++L A G A+ +FM Q
Sbjct: 215 LTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRL-AEEHGKAKAAQFMAQ 271
Score = 47 (21.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 540 NQHPSFHPHSLPEYHDSLANGLPYNSPS 567
+ H HPH P++H L + + ++ P+
Sbjct: 314 HHHQPQHPHQHPQHHPQLHH-MQHHHPN 340
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 124 (48.7 bits), Expect = 0.00048, P = 0.00048
Identities = 37/162 (22%), Positives = 73/162 (45%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFG---DIRTIYTACKHRG--FVMISYYDIRAARNAM 331
S +L+V ++ V + L +F Q G +IR R + ++YY+ A A+
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 332 KALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391
L N P+R + I +S + +PS + + G + + NLD + + L+ F +G I
Sbjct: 69 DTLNNTPIRGKACRIMWS--QRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILS 126
Query: 392 IR----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
+ D F+ + +A+ A+ +N + G+++
Sbjct: 127 CKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKV 168
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 123 (48.4 bits), Expect = 0.00048, P = 0.00048
Identities = 44/189 (23%), Positives = 87/189 (46%)
Query: 262 SAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA------CKHRG 315
SAG V E R L+V ++ V + LK +FE G + ++ K
Sbjct: 75 SAGGYV-RRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGAN 133
Query: 316 FVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKD-ANQGTLVVFNLDSSV 374
+ + + D AA AM+ L + + + ++ ++++ + +++D +N + V +L + V
Sbjct: 134 YGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEV 193
Query: 375 STEELHQIFGIYGEIREIR---D--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
+ E L Q F +G + E R D T + F+ F + AE AL +++ + + I
Sbjct: 194 NDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Query: 430 KLE-ASRPG 437
+ A++ G
Sbjct: 254 RCNWANQKG 262
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 45/155 (29%), Positives = 73/155 (47%)
Query: 277 SRTLFVRN-INSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T + N + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 97 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 45/155 (29%), Positives = 73/155 (47%)
Query: 277 SRTLFVRN-INSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T + N + N+ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 97 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 121 (47.7 bits), Expect = 0.00050, P = 0.00050
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 124 (48.7 bits), Expect = 0.00051, P = 0.00051
Identities = 39/182 (21%), Positives = 85/182 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FG+I + C +G+ + + AA A++ +
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 89
Query: 337 KPLRRRKLDI-HYSIPKDNPSE--KDANQGTLV-VFNLDSSVSTEELHQIFGIYGE---I 389
L RK+ + + K+ +E A + T V + N V E L ++F +G+ +
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 149
Query: 390 REIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQ 448
+ +RD K F+ + A A+ +N +++GK I + ++ R+ ++ +
Sbjct: 150 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 209
Query: 449 EQ 450
EQ
Sbjct: 210 EQ 211
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 128 (50.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 72/311 (23%), Positives = 132/311 (42%)
Query: 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK-----HRGFVMISY--- 321
H Y + TL++ N+++ V++ L LF Q G+++ ++ H G+ + Y
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 322 YDIRAARNA--MKALQNKPLRRRKLDIHYSIPKDNPS-EKDANQGTLVVFNLDSSVSTEE 378
Y+ A N M L K LR K +D S + AN L + NLD V +
Sbjct: 72 YECEYAANILNMTKLFGKALRCNKAT------QDKRSFDVGAN---LFIGNLDDEVDEKM 122
Query: 379 LHQIFGIYGEIREIRDTQHKHN----HKFIEFYDIRAAETALRTLNRSDVAGKQIKL--- 431
L IF +G+I ++ +++ + H FI + + +++ A+ +N + K++ +
Sbjct: 123 LFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYA 182
Query: 432 -----EASRPG-GARRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQ 485
+ R G A RF+ ++ LNL P ++ ++ V+ TS+ I
Sbjct: 183 FKKDSKGERHGTAAERFIAANKA----LNL--YPLNENNNNNNVNPSPFTSS----NDIP 232
Query: 486 VLHSATRSPAIALTES---HQTSSVPNGLPSLAR--VGSIGKQFGHYEPNLSLDEMKFGN 540
+ ++ T + LT + + T N +P L+ + I F Y PN
Sbjct: 233 LTNNTT----LNLTNNVYLNNTIITNNIIPKLSNDTISPIMNNF--YPPNPHQPTSSNYL 286
Query: 541 QHPSFHPHSLP 551
Q HP ++P
Sbjct: 287 QAQVGHPTNIP 297
Score = 41 (19.5 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 543 PSFHPHSLPEYHDSLANGLPYNSPSTI 569
P+F P P + LP N P T+
Sbjct: 418 PNFPPTLPPNFPPGFPPNLPPNFPPTL 444
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 128 (50.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 72/311 (23%), Positives = 132/311 (42%)
Query: 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK-----HRGFVMISY--- 321
H Y + TL++ N+++ V++ L LF Q G+++ ++ H G+ + Y
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 322 YDIRAARNA--MKALQNKPLRRRKLDIHYSIPKDNPS-EKDANQGTLVVFNLDSSVSTEE 378
Y+ A N M L K LR K +D S + AN L + NLD V +
Sbjct: 72 YECEYAANILNMTKLFGKALRCNKAT------QDKRSFDVGAN---LFIGNLDDEVDEKM 122
Query: 379 LHQIFGIYGEIREIRDTQHKHN----HKFIEFYDIRAAETALRTLNRSDVAGKQIKL--- 431
L IF +G+I ++ +++ + H FI + + +++ A+ +N + K++ +
Sbjct: 123 LFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYA 182
Query: 432 -----EASRPG-GARRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQ 485
+ R G A RF+ ++ LNL P ++ ++ V+ TS+ I
Sbjct: 183 FKKDSKGERHGTAAERFIAANKA----LNL--YPLNENNNNNNVNPSPFTSS----NDIP 232
Query: 486 VLHSATRSPAIALTES---HQTSSVPNGLPSLAR--VGSIGKQFGHYEPNLSLDEMKFGN 540
+ ++ T + LT + + T N +P L+ + I F Y PN
Sbjct: 233 LTNNTT----LNLTNNVYLNNTIITNNIIPKLSNDTISPIMNNF--YPPNPHQPTSSNYL 286
Query: 541 QHPSFHPHSLP 551
Q HP ++P
Sbjct: 287 QAQVGHPTNIP 297
Score = 41 (19.5 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 543 PSFHPHSLPEYHDSLANGLPYNSPSTI 569
P+F P P + LP N P T+
Sbjct: 418 PNFPPTLPPNFPPGFPPNLPPNFPPTL 444
>ZFIN|ZDB-GENE-050320-141 [details] [associations]
symbol:ptbp2a "polypyrimidine tract binding protein
2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050320-141
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:CU896585 IPI:IPI00996240 Ensembl:ENSDART00000123275
Bgee:F1QG05 Uniprot:F1QG05
Length = 512
Score = 97 (39.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 356 SEKDANQGTLVVFNLDSSVST-EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414
S ++ G L+V NL+ + T L +FG+YG+++ ++ +K + I+ D+ A+
Sbjct: 312 SGHSSSGGVLLVSNLNEEMVTPHSLFTLFGVYGDVQRVKILFNKKDSALIQMADMNQAQL 371
Query: 415 ALRTLNRSDVAGKQIKLEASR 435
A+ LN + K I++ S+
Sbjct: 372 AMSHLNGQKMFSKIIRVTMSK 392
Score = 74 (31.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 28/104 (26%), Positives = 43/104 (41%)
Query: 249 NSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308
NS GG S G ++ G P + + N+ V L+ +F +FG + I
Sbjct: 141 NSSQSGGTSTSGSNSSDGSGS---ASSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKII 197
Query: 309 TACKHRGF-VMISYYDIRAARNAMKALQNKPLRRR--KLDIHYS 349
T K+ F ++ Y D A+ A AL + + L I YS
Sbjct: 198 TFTKNNQFQALLQYNDPACAQQAKVALDGQNIYNACCTLRIDYS 241
Score = 74 (31.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 30/132 (22%), Positives = 57/132 (43%)
Query: 233 GGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDS 292
GGM L ++ + G ++ + VG+ P PSR L +R + ++V ++
Sbjct: 21 GGMYNSPSSGLSSISDTTS--NGSDSKKLRVEERVGDAP----PSRVLHIRKLPNDVSEA 74
Query: 293 ELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351
E+ AL FG + I T K++ F+ +S + + +R + I YS
Sbjct: 75 EIIALGLPFGKVTNILTLKGKNQAFLELSTEEAAMTMVNYYSAVTPHVRSVPVYIQYSNH 134
Query: 352 KDNPSEKDANQG 363
K+ ++ + G
Sbjct: 135 KELKTDNSSQSG 146
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 124 (48.7 bits), Expect = 0.00056, P = 0.00056
Identities = 39/182 (21%), Positives = 85/182 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FG+I + C +G+ + + AA A++ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSE--KDANQGTLV-VFNLDSSVSTEELHQIFGIYGE---I 389
L RK+ + + K+ +E A + T V + N V E L ++F +G+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 390 REIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQ 448
+ +RD K F+ + A A+ +N +++GK I + ++ R+ ++ +
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 449 EQ 450
EQ
Sbjct: 281 EQ 282
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 102 (41.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFG---DIRTIYTACKHRGFVMISYYDIRAAR 328
P++T+++RN+N V+ ELK AL Q+G D+ + T K RG + + +I AA
Sbjct: 8 PNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTP-KLRGQAWVVFSEITAAT 66
Query: 329 NAMKALQNKPLRRRKLDIHYSIPKDN 354
NA + LQ +++ + Y+ K +
Sbjct: 67 NAFRGLQEFDFYGKRMRVQYAKTKSD 92
Score = 57 (25.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419
L + NL + ++ L +F Y RE+R + K F+E+ D + A++ L
Sbjct: 160 LFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQAL 214
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 118 (46.6 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 36/130 (27%), Positives = 59/130 (45%)
Query: 321 YYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELH 380
Y R R A KPL + Y + N E D T+ V +D SV+ ++L
Sbjct: 239 YCSSRPMRTG-PAANKKPLTMQPAS--YQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLK 295
Query: 381 QIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440
+FG +GE+ ++ K F+++ + AE AL LN + + G+ I+L R +
Sbjct: 296 SVFGQFGELVHVKIPAGKRCG-FVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNK 354
Query: 441 RFMVQSEQEQ 450
+ Q +Q Q
Sbjct: 355 Q--TQPDQAQ 362
Score = 49 (22.3 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 268 GEHPYGEHPSRTLFVRNINSNVEDSEL----KALFEQFGDIRTIY--TACKHRGFVMISY 321
GE E P T+FV ++ +V D L KA++ + + T + +G+ + +
Sbjct: 163 GERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRF 222
Query: 322 YDIRAARNAMKALQNK 337
D AM + +
Sbjct: 223 ADESEQIRAMTEMNGQ 238
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 120 (47.3 bits), Expect = 0.00065, P = 0.00065
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 108 (43.1 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 277 SRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARNA 330
+ T+++ N+N ++ ELK A+F QFG I I + K RG + + ++ +A NA
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 331 MKALQNKPLRRRKLDIHYS 349
++++Q P + + I Y+
Sbjct: 75 LRSMQGFPFYDKPMRIQYA 93
Score = 54 (24.1 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
+P P ++ L + NL + L +F + +E+R +H+ F+EF
Sbjct: 200 MPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 256
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 120 (47.3 bits), Expect = 0.00065, P = 0.00065
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 120 (47.3 bits), Expect = 0.00065, P = 0.00065
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 124 (48.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 39/182 (21%), Positives = 85/182 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKH---RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FG+I + C +G+ + + AA A++ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSE--KDANQGTLV-VFNLDSSVSTEELHQIFGIYGE---I 389
L RK+ + + K+ +E A + T V + N V E L ++F +G+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 390 REIRDTQHKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQ 448
+ +RD K F+ + A A+ +N +++GK I + ++ R+ ++ +
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 449 EQ 450
EQ
Sbjct: 281 EQ 282
Score = 48 (22.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 498 LTESHQTSSVPNGLPSLARVGSIGKQFGH-YEPNLSLDEMKFGNQHPSFHPHSLPE 552
LT+S Q+ VP +P+LA ++ P ++ + HP+ P P+
Sbjct: 506 LTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVR--SPHPAIQPLQAPQ 559
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 120 (47.3 bits), Expect = 0.00066, P = 0.00066
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK++ ++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 100 (40.3 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 355 PSEKDANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAE 413
P A L+V NL+ V+ + L +FG+YG+++ ++ +K + +E D A+
Sbjct: 353 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQ 412
Query: 414 TALRTLNRSDVAGKQIKLEASR 435
A+ LN + GK +++ S+
Sbjct: 413 LAMSHLNGHKLHGKSVRITLSK 434
Score = 71 (30.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 34/132 (25%), Positives = 58/132 (43%)
Query: 239 GDDRLFAV-QKNSDFVGGVSNQ---GVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSEL 294
G D LF+ N F+ S G + G++ PSR + VR + S+V + E+
Sbjct: 15 GSDELFSTCVSNGPFIMSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEV 74
Query: 295 KALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNK--P-LRRRKLDIHYSI 350
+L FG + + K++ F+ +S + A N M P LR + + I +S
Sbjct: 75 ISLGLPFGKVTNLLMLKGKNQAFIEMSTEE---AANTMVNYYTSVAPVLRGQPIYIQFSN 131
Query: 351 PKDNPSEKDANQ 362
K+ ++ NQ
Sbjct: 132 HKELKTDSSPNQ 143
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 116 (45.9 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKH-----RGFVMISYYDIRA 326
Y P+ +LFVRNI ++ +L+ F ++G I +Y + RGF + + D+R
Sbjct: 4 YLRPPNSSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRD 63
Query: 327 ARNAMKALQNKPLRRRKLDIHYSI-PKDNPSEKDANQGT 364
A +A+ L K + R+++I ++ + P + A +G+
Sbjct: 64 AEDALHNLDKKWICGRQIEIQFAQGDRKTPHQMKAKEGS 102
Score = 43 (20.2 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 749 RSPQQICHLFPGRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADK 795
++P Q+ G + S + D N R R+ SY R S S ++
Sbjct: 91 KTPHQM-KAKEGSSTYGSSRYDDDRYNRRSRSRSYERRRSRSRSIEQ 136
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 112 (44.5 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 46/199 (23%), Positives = 83/199 (41%)
Query: 245 AVQKNSDFVGGVSNQGVSAGSVVGEHPY--GEHPS-RTLFVRNINSNVEDSELKALFEQF 301
AV+ NS+ NQG + SVV + G S R L+V N++ + + LK F+
Sbjct: 41 AVEGNSE--QAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVG 98
Query: 302 GDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357
G I I K+ + + Y+ A A++ L K + + I+++ S
Sbjct: 99 GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSS 158
Query: 358 KDANQGTLVVFNLDSSVSTEELHQIFGIY-----GEIREIRDTQHKHNHKFIEFYDIRAA 412
D L V +L+ +V E L F + G + T + F+ F A
Sbjct: 159 DDTFN--LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 216
Query: 413 ETALRTLNRSDVAGKQIKL 431
+ A+ ++ D+ G+ +++
Sbjct: 217 QNAMDSMQGQDLNGRPLRI 235
Score = 51 (23.0 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 937 FPM-GTNIRSRLGKPRINGNEESQRQG 962
FP G N+R+ GK R N + Q+QG
Sbjct: 399 FPFQGRNLRTGWGKERSNFMPQQQQQG 425
Score = 46 (21.3 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 760 GRNPMMSMQTSFDSSNERMRNLSYRRNESNSNHADKKQY 798
GR ++ D++N N RRN N+N +QY
Sbjct: 230 GRPLRINWAAKRDNNNNN--NYQQRRNYGNNNRGGFRQY 266
Score = 45 (20.9 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 761 RNPMMSMQTSFDSSNERMR-NLSYRR-NESNSNHADKKQY 798
+N M SMQ D + +R N + +R N +N+N+ ++ Y
Sbjct: 217 QNAMDSMQGQ-DLNGRPLRINWAAKRDNNNNNNYQQRRNY 255
>UNIPROTKB|F1LPP9 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:3191
IPI:IPI00765134 RefSeq:NP_001128232.1 UniGene:Rn.33873 PRIDE:F1LPP9
Ensembl:ENSRNOT00000057034 GeneID:80846 KEGG:rno:80846
NextBio:614884 ArrayExpress:F1LPP9 Uniprot:F1LPP9
Length = 623
Score = 123 (48.4 bits), Expect = 0.00071, P = 0.00071
Identities = 55/236 (23%), Positives = 106/236 (44%)
Query: 232 GGGMELEGDDRLFAVQKNSDFVGGVSNQGV-SAGSVVGEH---PYGEHPSRTLFVRNINS 287
GGG E + + D GG G +AG GE+ P+ S + +R +
Sbjct: 49 GGGNEGGRAPKRLKTENAGDQHGGGGGGGSGAAGGGGGENYDDPHKTPASPVVHIRGLID 108
Query: 288 NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMK-ALQNKP-LRRRKLD 345
V +++L ++FG I + K R ++ + D+ A NA+ A N+ +
Sbjct: 109 GVVEADLVEALQEFGPISYVVVMPKKRQ-ALVEFEDVLGACNAVNYAADNQIYIAGHPAF 167
Query: 346 IHYSI------PKDNPSEKDANQGTL-VVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK 398
++YS P D+ + N L + N S++T+ L+ I G ++ I +
Sbjct: 168 VNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN 227
Query: 399 HNHKFIEFYDIRAAETALRTLNRSDV-AGK-QIKLEASRPGGARRFMVQSEQEQDD 452
+EF +++A+ A +LN +D+ +G +K+E ++P R + +++Q+ D
Sbjct: 228 GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKP--TRLNVFKNDQDTWD 281
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 123 (48.4 bits), Expect = 0.00072, P = 0.00072
Identities = 38/182 (20%), Positives = 85/182 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KH--RGFVMISYYDIRAARNAMKALQN 336
+F++N++ ++++ L F FG+I + C +H RG+ + + AA A++ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNG 160
Query: 337 KPLRRRKLDI-HYSIPKDNPSEKDAN--QGTLV-VFNLDSSVSTEELHQIFGIYGEIREI 392
L RK+ + H+ ++ E A + T V + N + + L +IF +G +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 393 R----DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQ 448
+ D+ F+ + + A+ A+ +N +V G+ I + ++ R+ ++ +
Sbjct: 221 KVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKF 280
Query: 449 EQ 450
EQ
Sbjct: 281 EQ 282
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 98 (39.6 bits), Expect = 0.00072, P = 0.00072
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-----RDTQHKHNHKFIEFYDIRAAETA 415
+Q + V +L V+ +EL FG YGEI E R+T FI + AA+ A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 416 LRTLNRSDVAGKQIKLEASRPG-GARR 441
+ N D+ G++I++ +R G RR
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTGDRR 102
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 98 (39.6 bits), Expect = 0.00072, P = 0.00072
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-----RDTQHKHNHKFIEFYDIRAAETA 415
+Q + V +L V+ +EL FG YGEI E R+T FI + AA+ A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 416 LRTLNRSDVAGKQIKLEASRPG-GARR 441
+ N D+ G++I++ +R G RR
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTGDRR 102
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 98 (39.6 bits), Expect = 0.00072, P = 0.00072
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKH--RGFVMISYYDIRAARNAMKAL 334
+R L+VRN+ N+ E+ +F ++G IR I C +G + Y DI A+NA+ L
Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHL 77
Query: 335 QNKPLRRRKLDIHY 348
+ R L + Y
Sbjct: 78 SGFNVANRYLIVLY 91
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 107 (42.7 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK ALF QFG + I K RG + + ++ ++ N
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 65 ALRQLQGFPFYGKPMRIQYA 84
Score = 49 (22.3 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 354 NPSEKDANQGTLVVFN-LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
NP D ++ N L + L +F + +E+R +H+ F+EF
Sbjct: 134 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 187
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 97 (39.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACK----HRGFVMISYYDIRAARNAMKALQ 335
L +RN++ E+ +LK +F +FG + K RGF + + + A A+ A+
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 336 NKPLRRRKLDIHYSIPKD 353
K ++ R++ + ++I KD
Sbjct: 298 GKKIKDRQVAVDWAIAKD 315
Score = 78 (32.5 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 27/91 (29%), Positives = 41/91 (45%)
Query: 352 KDNPSEKDANQG-TLVVFNLDSSVSTEELHQIFGIYGEIREIR-----DTQHKHNHKFIE 405
K NP D N+G T+ + NL E L ++ +GE+ +R DT F +
Sbjct: 427 KRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQ 486
Query: 406 FYDIRAAETALRT-LNRSDVAGKQIKLEASR 435
F AAE + L+ + +G IKL+ R
Sbjct: 487 FKSKEAAEKCIAAALDEKEFSG--IKLDGRR 515
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 118 (46.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 354 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAE 413
N + D N T+ V LD++V+ +EL IFG +GE+ ++ K F+++ + +AE
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG-FVQYANKASAE 309
Query: 414 TALRTLNRSDVAGKQIKLEASR 435
AL LN + + G+ I+L R
Sbjct: 310 HALSVLNGTQLGGQSIRLSWGR 331
Score = 47 (21.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 274 EHPSRTLFVRNINSNVEDSELKALFEQ-FGDIRTIY-----TACKHRGFVMISYYDIRAA 327
E P T+FV ++ V D L F+ +G ++ T + +G+ + + D
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 328 RNAMKALQNKPLRRRKLDI 346
AM + + R + I
Sbjct: 210 MRAMTEMNGQYCSTRPMRI 228
>UNIPROTKB|J9NXJ9 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03005528 Ensembl:ENSCAFT00000048760 Uniprot:J9NXJ9
Length = 165
Score = 109 (43.4 bits), Expect = 0.00082, P = 0.00082
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARN 329
P+ T+++ ++N ++ ELK A+F QFG I I + K RG + + ++ A N
Sbjct: 27 PNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFKEVSRATN 86
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++++Q P + + I Y+
Sbjct: 87 ALRSMQGFPFYDKPMSIQYA 106
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 120 (47.3 bits), Expect = 0.00083, P = 0.00083
Identities = 64/327 (19%), Positives = 135/327 (41%)
Query: 268 GEHPYGEHPS--RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDI 324
G P G PS R+++V NI+ V + L+ +F G + + K + + + Y+D
Sbjct: 42 GNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDR 101
Query: 325 RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFG 384
R+A A+ +L + L + + ++++ E ++ + V +L V+ L F
Sbjct: 102 RSAGLAILSLNGRHLFGQPIKVNWAYASGQ-REDTSSHFNIFVGDLSPEVTDAMLFTCFS 160
Query: 385 IY---GEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439
+Y + R + D T F+ F + + A+TA+ + + +QI+ + G
Sbjct: 161 VYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGAT 220
Query: 440 RRFMVQSEQEQDDLNLCQIPFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIALT 499
+ +Q D ++ ++ G+ ++G +N ++ +P ++
Sbjct: 221 SG---EDKQSSDSKSVVELTSGVSEDGKDTTNGEAPE---NNAQYTTVYVGNLAPEVSQV 274
Query: 500 ESHQT-SSVPNGLPSLARVGSIGKQFG--HYEPNLSLD-EMKFGNQHPSFHPHSL----- 550
+ H+ S+ G+ RV K FG Y ++ ++ GN H +
Sbjct: 275 DLHRHFHSLGAGVIEEVRVQR-DKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWG 333
Query: 551 --PEYHDSLANGLPYNSPSTIADIASS 575
P + +N LP +P+ I ++S
Sbjct: 334 SKPTPAGTASNPLPPPAPAPIPGFSAS 360
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 103 (41.3 bits), Expect = 0.00085, P = 0.00085
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 367 VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426
V NL SS S E+ F YG +R + ++ F+EF D R AE A R L+ + G
Sbjct: 15 VGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCG 74
Query: 427 KQIKLEAS 434
+I++E S
Sbjct: 75 TRIRVEMS 82
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 107 (42.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK ALF QFG + I K RG + + ++ ++ N
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 65 ALRQLQGFPFYGKPMRIQYA 84
Score = 49 (22.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 354 NPSEKDANQGTLVVFN-LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
NP D ++ N L + L +F + +E+R +H+ F+EF
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 194
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 107 (42.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK ALF QFG + I K RG + + ++ ++ N
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 65 ALRQLQGFPFYGKPMRIQYA 84
Score = 49 (22.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 354 NPSEKDANQGTLVVFN-LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
NP D ++ N L + L +F + +E+R +H+ F+EF
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 194
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 107 (42.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK ALF QFG + I K RG + + ++ ++ N
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 65 ALRQLQGFPFYGKPMRIQYA 84
Score = 49 (22.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 354 NPSEKDANQGTLVVFN-LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
NP D ++ N L + L +F + +E+R +H+ F+EF
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 194
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 107 (42.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK ALF QFG + I K RG + + ++ ++ N
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 65 ALRQLQGFPFYGKPMRIQYA 84
Score = 49 (22.3 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 354 NPSEKDANQGTLVVFN-LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
NP D ++ N L + L +F + +E+R +H+ F+EF
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 194
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 117 (46.2 bits), Expect = 0.00088, P = 0.00088
Identities = 45/200 (22%), Positives = 88/200 (44%)
Query: 253 VGGVS---NQGVSAGSVVGEHPYGEHPSRT-LFVRNINSNVEDSELKALFEQFGDIR--- 305
+GG S ++ + VG + E P LFV N+ +V+ L LFEQ G +
Sbjct: 87 IGGTSVTVDESFESEDGVG---FPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISE 143
Query: 306 TIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDAN-- 361
IY + RGF ++ + A A++ + + R+L ++ + P+ + E+
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVY 203
Query: 362 --QGTLVVFNLDSSVSTEELHQIFGIYGEI---REI--RDTQHKHNHKFIEFYDIRAAET 414
+ V NL V + L ++F +G++ R + R+T F++ +
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 415 ALRTLNRSDVAGKQIKLEAS 434
A+ L+ ++ G+ IK+ +
Sbjct: 264 AIAALDGQNLEGRAIKVNVA 283
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 105 (42.0 bits), Expect = 0.00091, P = 0.00091
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + +EL F YG + E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQI 429
++ F+ A A+R L+ ++ Q+
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQDIQL 141
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 109 (43.4 bits), Expect = 0.00092, P = 0.00092
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-----RDTQHKHNHKFIEFYDIRAAETA 415
++G L+V L + + L Q+F YG+I E+ R+TQ F+ F +I A+ A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 416 LRTLNRSDVAGKQIKLEASRPGGARR 441
+ +N V G+QI+++ + R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSENR 89
>CGD|CAL0004460 [details] [associations]
symbol:orf19.4748 species:5476 "Candida albicans" [GO:0030620
"U2 snRNA binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0071004 "U2-type prespliceosome" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004460 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000001
GO:GO:0000398 GO:GO:0005686 GO:GO:0030620 PANTHER:PTHR10501
RefSeq:XP_723434.1 ProteinModelPortal:Q5AQ60 STRING:Q5AQ60
GeneID:3634924 KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 97 (39.2 bits), Expect = 0.00093, P = 0.00093
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 276 PSRTLFVRNINSNVEDS----ELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 331
PS+TL+V+N+N+ + L LF FGDI +I GF I + ++ +A A+
Sbjct: 30 PSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINL---QNGFAFIIFSNLNSATLAL 86
Query: 332 KALQNKPLRRRKLDIHYSI 350
+ L+N+ + L ++Y++
Sbjct: 87 RNLKNQDFFDKPLVLNYAV 105
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 97 (39.2 bits), Expect = 0.00093, P = 0.00093
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 367 VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426
V NL ++ + EL + FG YG +R + ++ F+EF D R A A+R L+ + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 427 KQIKLEASRPGGARR 441
++++E S G +R
Sbjct: 74 CRVRVELSN--GEKR 86
>UNIPROTKB|Q5AQ60 [details] [associations]
symbol:MSL1 "Putative uncharacterized protein MSL1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0030620 "U2 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 CGD:CAL0004460 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AACQ01000001 GO:GO:0000398 GO:GO:0005686
GO:GO:0030620 PANTHER:PTHR10501 RefSeq:XP_723434.1
ProteinModelPortal:Q5AQ60 STRING:Q5AQ60 GeneID:3634924
KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 97 (39.2 bits), Expect = 0.00093, P = 0.00093
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 276 PSRTLFVRNINSNVEDS----ELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 331
PS+TL+V+N+N+ + L LF FGDI +I GF I + ++ +A A+
Sbjct: 30 PSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINL---QNGFAFIIFSNLNSATLAL 86
Query: 332 KALQNKPLRRRKLDIHYSI 350
+ L+N+ + L ++Y++
Sbjct: 87 RNLKNQDFFDKPLVLNYAV 105
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 119 (46.9 bits), Expect = 0.00094, P = 0.00094
Identities = 45/155 (29%), Positives = 73/155 (47%)
Query: 277 SRT-LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-----KHRGFVMISYYDIRAARNA 330
S+T L V + ++ ELK+LF G+I + + G+ ++Y D + A A
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKA 124
Query: 331 MKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI- 389
+ L L+ + + + Y+ P + S +DAN L V L +++ +EL Q+F YG I
Sbjct: 125 INTLNGLRLQTKTIKVSYARPS-SASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 390 --REIRD--TQHKHNHKFIEFYDIRAAETALRTLN 420
R + D T FI F AE A++ LN
Sbjct: 181 TSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLN 215
>FB|FBgn0004227 [details] [associations]
symbol:nonA "no on or off transient A" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA]
[GO:0045433 "male courtship behavior, veined wing generated song
production" evidence=NAS;IMP;TAS] [GO:0007601 "visual perception"
evidence=NAS;IMP;TAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS]
[GO:0007632 "visual behavior" evidence=NAS] [GO:0042331
"phototaxis" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0007601
GO:GO:0042331 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0045433 GO:GO:0007632
InterPro:IPR012975 Pfam:PF08075 EMBL:M33496 EMBL:X55902
EMBL:AY119651 PIR:JH0162 PIR:JH0163 RefSeq:NP_001014747.1
RefSeq:NP_523367.2 UniGene:Dm.179 ProteinModelPortal:Q04047
SMR:Q04047 MINT:MINT-810524 STRING:Q04047 PaxDb:Q04047
EnsemblMetazoa:FBtr0074232 GeneID:32603 KEGG:dme:Dmel_CG4211
CTD:32603 FlyBase:FBgn0004227 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 InParanoid:Q04047 KO:K13219
OrthoDB:EOG4GTHVF GenomeRNAi:32603 NextBio:779385 Bgee:Q04047
GermOnline:CG4211 Uniprot:Q04047
Length = 700
Score = 122 (48.0 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 42/146 (28%), Positives = 70/146 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKP 338
L+V N+ +++ D EL+ +F+ +G+I I++ K+ F+ + Y+ A A +AL
Sbjct: 304 LYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHP--NAEKAKRALDGSM 361
Query: 339 LRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR---DT 395
+ R+L + ++ P N L V NL VS E L++ F I+G I D
Sbjct: 362 RKGRQLRVRFA-P---------NATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDD 411
Query: 396 QHKH-NHKFIEFYDIRAAETALRTLN 420
+ KH +EF +A LR N
Sbjct: 412 RGKHMGEGIVEFAKKSSASACLRMCN 437
Score = 49 (22.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 24 PAERQIGFWKPNTMSDQQGSDGTVPMLGGKFVASSPMEN 62
PAE++ F PN + Q + + GG P +N
Sbjct: 46 PAEKKQRFGGPNAQNQNQNQNQNGGVTGGGGAVGGPNQN 84
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 107 (42.7 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 276 PSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARN 329
P+ T+++ N+N ++ ELK ALF QFG + I K RG + + ++ ++ N
Sbjct: 15 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 74
Query: 330 AMKALQNKPLRRRKLDIHYS 349
A++ LQ P + + I Y+
Sbjct: 75 ALRQLQGFPFYGKPMRIQYA 94
Score = 49 (22.3 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 354 NPSEKDANQGTLVVFN-LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEF 406
NP D ++ N L + L +F + +E+R +H+ F+EF
Sbjct: 146 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEF 199
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 117 (46.2 bits), Expect = 0.0010, P = 0.0010
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339
LF+ N+ + E+++LFEQ+G + K+ GFV I D AA +A++ L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHHKL 60
Query: 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399
+++ S K S K L V N+ + + EL F YG + E +
Sbjct: 61 HGVCINVEASKNKSKASTK------LHVGNISPTCTNLELRAKFEEYGPVIECDIVK--- 111
Query: 400 NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434
++ F+ A A+R L+ ++ GK+++++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLS 146
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 987 927 0.00091 122 3 11 22 0.43 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 240
No. of states in DFA: 623 (66 KB)
Total size of DFA: 462 KB (2217 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 87.03u 0.12s 87.15t Elapsed: 00:00:05
Total cpu time: 87.07u 0.12s 87.19t Elapsed: 00:00:05
Start: Fri May 10 00:34:05 2013 End: Fri May 10 00:34:10 2013
WARNINGS ISSUED: 1