Query 001976
Match_columns 987
No_of_seqs 770 out of 3242
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 1.2E-70 2.7E-75 619.7 25.4 518 224-956 2-529 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 1.6E-45 3.4E-50 341.5 10.8 97 812-908 1-97 (97)
3 TIGR01628 PABP-1234 polyadenyl 100.0 6.1E-36 1.3E-40 356.0 22.5 276 125-441 65-368 (562)
4 TIGR01628 PABP-1234 polyadenyl 100.0 4.9E-34 1.1E-38 339.6 20.5 294 150-487 2-328 (562)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-32 3.3E-37 307.3 21.0 247 148-440 3-352 (352)
6 KOG0123 Polyadenylate-binding 100.0 1.8E-31 4E-36 301.7 13.0 271 124-441 59-353 (369)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-29 2.8E-34 297.1 23.1 292 150-479 4-428 (481)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 9.9E-30 2.1E-34 299.8 20.2 236 149-439 59-309 (578)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.9E-28 4.2E-33 287.1 22.3 287 124-437 62-480 (481)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-27 2.6E-32 267.9 20.9 159 276-438 2-172 (352)
11 KOG0117 Heterogeneous nuclear 100.0 6.8E-28 1.5E-32 266.8 17.7 242 148-441 83-335 (506)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-26 3.1E-31 271.8 21.9 267 149-436 176-501 (509)
13 TIGR01622 SF-CC1 splicing fact 99.9 3.1E-26 6.6E-31 265.8 20.6 257 149-438 90-449 (457)
14 TIGR01659 sex-lethal sex-letha 99.9 3.2E-26 6.9E-31 257.6 20.0 163 272-438 102-276 (346)
15 KOG0123 Polyadenylate-binding 99.9 9.2E-26 2E-30 255.5 17.7 283 150-489 3-315 (369)
16 KOG0145 RNA-binding protein EL 99.9 1.4E-25 3.1E-30 234.1 17.3 246 148-437 41-358 (360)
17 TIGR01645 half-pint poly-U bin 99.9 2E-24 4.4E-29 255.5 19.4 164 275-438 105-285 (612)
18 KOG0148 Apoptosis-promoting RN 99.9 2.1E-24 4.5E-29 227.1 15.2 161 277-438 62-239 (321)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 1E-23 2.2E-28 249.2 21.8 191 276-480 57-268 (578)
20 TIGR01645 half-pint poly-U bin 99.9 1.1E-23 2.4E-28 249.2 21.2 169 147-350 106-282 (612)
21 KOG0127 Nucleolar protein fibr 99.9 9.6E-24 2.1E-28 238.0 18.7 294 149-468 6-422 (678)
22 KOG0117 Heterogeneous nuclear 99.9 4.4E-23 9.4E-28 228.9 18.1 190 275-478 81-290 (506)
23 TIGR01622 SF-CC1 splicing fact 99.9 6.3E-23 1.4E-27 238.2 18.8 163 273-436 85-265 (457)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.5E-22 5.5E-27 236.0 18.9 164 272-437 170-375 (509)
25 KOG0145 RNA-binding protein EL 99.9 5.6E-22 1.2E-26 207.4 14.2 163 274-440 38-212 (360)
26 KOG0144 RNA-binding protein CU 99.9 5.4E-22 1.2E-26 219.3 12.3 164 275-441 32-210 (510)
27 KOG0144 RNA-binding protein CU 99.9 5.9E-22 1.3E-26 219.0 11.9 277 123-439 9-506 (510)
28 KOG0109 RNA-binding protein LA 99.8 6.9E-21 1.5E-25 202.3 9.3 149 278-438 3-151 (346)
29 KOG0131 Splicing factor 3b, su 99.8 1.6E-20 3.5E-25 188.8 11.4 164 274-440 6-180 (203)
30 KOG0127 Nucleolar protein fibr 99.8 1.1E-19 2.3E-24 205.6 15.7 162 278-439 6-198 (678)
31 KOG0148 Apoptosis-promoting RN 99.8 6.4E-19 1.4E-23 186.0 11.7 178 274-481 3-198 (321)
32 TIGR01659 sex-lethal sex-letha 99.8 1.8E-18 4E-23 195.1 11.9 164 145-352 104-275 (346)
33 KOG0124 Polypyrimidine tract-b 99.7 3.4E-18 7.3E-23 185.6 10.2 160 277-436 113-289 (544)
34 KOG0147 Transcriptional coacti 99.7 1.1E-17 2.4E-22 190.7 10.4 222 204-436 216-527 (549)
35 KOG0110 RNA-binding protein (R 99.7 1.9E-17 4.1E-22 193.0 11.2 162 278-439 516-695 (725)
36 KOG4206 Spliceosomal protein s 99.7 2.2E-16 4.7E-21 164.5 15.8 163 273-435 5-220 (221)
37 KOG0146 RNA-binding protein ET 99.7 7.8E-17 1.7E-21 169.7 9.5 166 276-441 18-369 (371)
38 KOG0124 Polypyrimidine tract-b 99.7 2E-16 4.3E-21 172.0 11.1 253 148-435 113-533 (544)
39 KOG0110 RNA-binding protein (R 99.6 2.4E-15 5.2E-20 175.7 13.8 208 273-481 381-647 (725)
40 KOG4205 RNA-binding protein mu 99.6 1.7E-15 3.6E-20 167.7 9.9 163 276-440 5-179 (311)
41 KOG0105 Alternative splicing f 99.6 5.5E-15 1.2E-19 149.1 12.4 149 275-425 4-176 (241)
42 KOG0147 Transcriptional coacti 99.6 1.1E-15 2.3E-20 174.7 5.7 166 271-437 173-358 (549)
43 KOG4212 RNA-binding protein hn 99.6 1.4E-12 3E-17 145.1 29.4 160 276-435 43-292 (608)
44 KOG0109 RNA-binding protein LA 99.5 3.4E-15 7.3E-20 159.4 5.6 149 149-354 3-152 (346)
45 KOG0106 Alternative splicing f 99.5 4.8E-14 1E-18 148.2 5.9 149 278-432 2-166 (216)
46 KOG4212 RNA-binding protein hn 99.4 2.6E-12 5.5E-17 143.1 18.5 73 362-434 536-608 (608)
47 KOG1548 Transcription elongati 99.4 3.9E-12 8.5E-17 139.0 15.5 166 273-438 130-353 (382)
48 PLN03134 glycine-rich RNA-bind 99.4 1.3E-12 2.9E-17 130.7 10.5 82 273-354 30-116 (144)
49 PLN03134 glycine-rich RNA-bind 99.4 1.7E-12 3.7E-17 129.8 10.4 78 361-438 33-115 (144)
50 KOG0131 Splicing factor 3b, su 99.3 6.9E-13 1.5E-17 134.2 4.4 164 147-355 8-180 (203)
51 KOG1457 RNA binding protein (c 99.3 8.9E-12 1.9E-16 129.4 11.3 149 276-424 33-273 (284)
52 KOG0120 Splicing factor U2AF, 99.3 2.2E-11 4.8E-16 141.3 14.4 165 273-437 285-492 (500)
53 KOG1190 Polypyrimidine tract-b 99.3 6E-11 1.3E-15 131.9 16.2 163 276-438 149-374 (492)
54 PF00076 RRM_1: RNA recognitio 99.3 8.3E-12 1.8E-16 106.9 7.5 66 365-430 1-70 (70)
55 KOG4205 RNA-binding protein mu 99.3 3.7E-12 8E-17 141.3 5.9 203 147-389 5-214 (311)
56 KOG1190 Polypyrimidine tract-b 99.3 4.5E-11 9.7E-16 132.9 14.0 160 277-436 297-490 (492)
57 PF00076 RRM_1: RNA recognitio 99.3 1E-11 2.2E-16 106.4 7.1 66 280-345 1-70 (70)
58 COG0724 RNA-binding proteins ( 99.2 4.1E-11 9E-16 125.0 11.8 120 277-396 115-259 (306)
59 KOG0107 Alternative splicing f 99.2 3E-11 6.5E-16 121.9 7.2 77 362-438 10-86 (195)
60 KOG4211 Splicing factor hnRNP- 99.2 1.1E-10 2.5E-15 132.7 12.2 163 276-441 9-186 (510)
61 KOG0107 Alternative splicing f 99.2 3.2E-11 6.9E-16 121.7 5.8 78 276-353 9-86 (195)
62 KOG1456 Heterogeneous nuclear 99.1 7.1E-10 1.5E-14 122.2 14.0 168 271-439 25-201 (494)
63 KOG0125 Ataxin 2-binding prote 99.1 1.9E-10 4.1E-15 125.3 9.5 83 273-355 92-177 (376)
64 PLN03120 nucleic acid binding 99.1 2.2E-10 4.8E-15 123.7 9.9 74 362-436 4-79 (260)
65 KOG0125 Ataxin 2-binding prote 99.1 1.9E-10 4.1E-15 125.3 8.8 100 335-438 73-175 (376)
66 PF14259 RRM_6: RNA recognitio 99.1 3.4E-10 7.3E-15 98.2 8.2 66 365-430 1-70 (70)
67 smart00362 RRM_2 RNA recogniti 99.1 5.1E-10 1.1E-14 94.3 9.0 69 364-432 1-72 (72)
68 KOG0114 Predicted RNA-binding 99.1 3.8E-10 8.1E-15 105.3 8.0 81 273-353 14-96 (124)
69 PLN03120 nucleic acid binding 99.1 3.7E-10 7.9E-15 122.0 8.9 75 277-352 4-80 (260)
70 PF14259 RRM_6: RNA recognitio 99.1 4.3E-10 9.3E-15 97.5 7.5 66 280-345 1-70 (70)
71 PF13893 RRM_5: RNA recognitio 99.0 9.9E-10 2.1E-14 91.9 8.7 56 379-434 1-56 (56)
72 KOG0121 Nuclear cap-binding pr 99.0 2.6E-10 5.5E-15 110.0 5.6 78 273-350 32-114 (153)
73 KOG4660 Protein Mei2, essentia 99.0 2.1E-10 4.6E-15 132.2 6.0 162 273-437 71-250 (549)
74 KOG0122 Translation initiation 99.0 5.4E-10 1.2E-14 117.9 8.2 77 361-437 188-269 (270)
75 KOG0114 Predicted RNA-binding 99.0 1.3E-09 2.7E-14 101.9 9.6 83 361-443 17-101 (124)
76 PLN03213 repressor of silencin 99.0 1.4E-09 3E-14 123.0 9.3 86 361-446 9-97 (759)
77 KOG0122 Translation initiation 99.0 1E-09 2.2E-14 115.9 7.7 79 274-352 186-269 (270)
78 KOG1456 Heterogeneous nuclear 99.0 1.4E-08 3.1E-13 112.1 16.9 167 271-437 114-363 (494)
79 cd00590 RRM RRM (RNA recogniti 99.0 3.6E-09 7.8E-14 89.5 9.5 70 364-433 1-74 (74)
80 smart00362 RRM_2 RNA recogniti 99.0 1.7E-09 3.8E-14 91.0 7.5 69 279-347 1-72 (72)
81 KOG0121 Nuclear cap-binding pr 98.9 1.2E-09 2.6E-14 105.5 6.1 76 361-436 35-115 (153)
82 KOG0149 Predicted RNA-binding 98.9 1.5E-09 3.3E-14 114.2 6.9 77 273-350 8-89 (247)
83 smart00360 RRM RNA recognition 98.9 3.8E-09 8.2E-14 88.5 8.0 66 367-432 1-71 (71)
84 PLN03121 nucleic acid binding 98.9 3.9E-09 8.4E-14 112.7 9.8 74 362-436 5-80 (243)
85 PLN03213 repressor of silencin 98.9 2E-09 4.4E-14 121.7 7.9 120 274-395 7-136 (759)
86 KOG4207 Predicted splicing fac 98.9 1.4E-09 3E-14 112.3 5.9 79 272-350 8-91 (256)
87 COG0724 RNA-binding proteins ( 98.9 7.5E-09 1.6E-13 108.0 11.2 75 362-436 115-194 (306)
88 KOG0113 U1 small nuclear ribon 98.9 3.3E-09 7.2E-14 114.6 8.2 78 273-350 97-179 (335)
89 KOG4207 Predicted splicing fac 98.9 2.2E-09 4.7E-14 110.8 5.7 77 362-438 13-94 (256)
90 PLN03121 nucleic acid binding 98.9 5E-09 1.1E-13 111.8 8.3 74 276-350 4-79 (243)
91 KOG0105 Alternative splicing f 98.8 3.3E-09 7.2E-14 107.9 6.2 77 361-437 5-83 (241)
92 smart00360 RRM RNA recognition 98.8 5.8E-09 1.3E-13 87.3 6.7 66 282-347 1-71 (71)
93 KOG0130 RNA-binding protein RB 98.8 4.7E-09 1E-13 102.1 6.0 83 357-439 67-154 (170)
94 cd00590 RRM RRM (RNA recogniti 98.8 1.1E-08 2.3E-13 86.7 7.5 70 279-348 1-74 (74)
95 KOG0111 Cyclophilin-type pepti 98.8 2.3E-09 4.9E-14 111.4 4.0 80 275-354 8-92 (298)
96 KOG0113 U1 small nuclear ribon 98.8 1.4E-08 3E-13 109.9 9.8 91 349-439 88-183 (335)
97 PF13893 RRM_5: RNA recognitio 98.8 1.3E-08 2.7E-13 85.2 5.9 56 294-349 1-56 (56)
98 KOG0111 Cyclophilin-type pepti 98.7 6.1E-09 1.3E-13 108.2 4.0 81 361-441 9-94 (298)
99 KOG0149 Predicted RNA-binding 98.7 1.7E-08 3.6E-13 106.5 6.3 79 359-438 9-92 (247)
100 KOG0108 mRNA cleavage and poly 98.7 2.1E-08 4.5E-13 116.2 6.8 77 278-354 19-100 (435)
101 KOG0126 Predicted RNA-binding 98.7 2.7E-09 5.9E-14 108.3 -0.6 75 275-349 33-112 (219)
102 KOG0129 Predicted RNA-binding 98.7 2.4E-07 5.1E-12 106.8 14.3 142 273-417 255-431 (520)
103 KOG0130 RNA-binding protein RB 98.6 3.2E-08 6.8E-13 96.5 5.3 82 272-353 67-153 (170)
104 KOG0108 mRNA cleavage and poly 98.6 5.6E-08 1.2E-12 112.6 8.1 79 363-441 19-102 (435)
105 smart00361 RRM_1 RNA recogniti 98.6 1E-07 2.3E-12 83.7 7.4 57 376-432 2-70 (70)
106 KOG0120 Splicing factor U2AF, 98.6 7.8E-08 1.7E-12 112.2 8.1 164 273-438 171-370 (500)
107 KOG0112 Large RNA-binding prot 98.6 3.4E-08 7.3E-13 119.0 4.6 159 273-438 368-532 (975)
108 KOG0126 Predicted RNA-binding 98.6 1E-08 2.3E-13 104.2 -0.4 77 360-436 33-114 (219)
109 KOG4206 Spliceosomal protein s 98.5 1.9E-07 4E-12 98.4 7.6 77 363-439 10-92 (221)
110 KOG0132 RNA polymerase II C-te 98.5 1.4E-07 3E-12 112.3 6.9 121 277-433 421-541 (894)
111 KOG0132 RNA polymerase II C-te 98.5 2.7E-07 5.8E-12 109.9 8.5 81 360-441 419-499 (894)
112 KOG0153 Predicted RNA-binding 98.5 3.1E-07 6.6E-12 101.5 7.9 79 357-436 223-302 (377)
113 KOG0106 Alternative splicing f 98.5 1.4E-07 3E-12 99.9 5.0 161 149-349 2-168 (216)
114 KOG0146 RNA-binding protein ET 98.5 2.2E-07 4.7E-12 99.2 6.4 81 274-354 282-367 (371)
115 KOG4454 RNA binding protein (R 98.4 5.4E-08 1.2E-12 101.5 1.3 133 275-421 7-147 (267)
116 smart00361 RRM_1 RNA recogniti 98.4 3.1E-07 6.8E-12 80.7 5.9 56 291-346 2-69 (70)
117 KOG0153 Predicted RNA-binding 98.4 5.1E-07 1.1E-11 99.7 7.1 83 269-352 220-303 (377)
118 KOG1365 RNA-binding protein Fu 98.4 2.6E-06 5.7E-11 94.9 12.0 163 275-438 159-363 (508)
119 KOG4210 Nuclear localization s 98.3 6.7E-07 1.4E-11 99.2 6.1 164 275-439 86-266 (285)
120 KOG4211 Splicing factor hnRNP- 98.3 6.6E-06 1.4E-10 94.6 13.5 198 205-417 45-339 (510)
121 KOG0128 RNA-binding protein SA 98.3 1.5E-07 3.3E-12 113.2 -0.7 139 277-436 667-814 (881)
122 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.6E-11 96.7 5.8 78 360-437 237-319 (479)
123 KOG1457 RNA binding protein (c 98.2 6.5E-06 1.4E-10 86.5 10.5 63 277-339 210-273 (284)
124 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.6E-11 96.7 5.0 80 273-352 235-319 (479)
125 KOG4208 Nucleolar RNA-binding 98.2 3.5E-06 7.7E-11 87.8 7.2 81 272-352 44-130 (214)
126 KOG2193 IGF-II mRNA-binding pr 98.1 3.9E-07 8.4E-12 102.2 -1.0 150 278-436 2-156 (584)
127 KOG0226 RNA-binding proteins [ 98.1 3.9E-06 8.4E-11 89.7 4.8 160 279-438 98-271 (290)
128 KOG4208 Nucleolar RNA-binding 98.0 1.3E-05 2.9E-10 83.6 8.0 79 359-437 46-130 (214)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 98.0 6E-06 1.3E-10 85.7 5.1 91 810-900 5-100 (176)
130 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.1E-05 2.3E-10 93.4 6.6 75 362-436 405-484 (940)
131 KOG0151 Predicted splicing reg 98.0 1.7E-05 3.6E-10 94.2 8.2 84 268-351 165-256 (877)
132 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.7E-05 3.8E-10 91.7 6.8 76 275-350 403-483 (940)
133 KOG0533 RRM motif-containing p 97.8 3.5E-05 7.7E-10 83.5 6.9 79 274-352 80-162 (243)
134 KOG0151 Predicted splicing reg 97.8 2.7E-05 5.8E-10 92.5 6.5 78 359-436 171-256 (877)
135 KOG0116 RasGAP SH3 binding pro 97.7 4.3E-05 9.4E-10 88.6 6.1 75 363-438 289-368 (419)
136 KOG0116 RasGAP SH3 binding pro 97.7 3.9E-05 8.5E-10 89.0 5.0 75 276-351 287-366 (419)
137 KOG4454 RNA binding protein (R 97.6 4.3E-05 9.3E-10 80.3 4.1 76 361-436 8-86 (267)
138 KOG0533 RRM motif-containing p 97.6 0.00015 3.3E-09 78.6 8.4 78 361-438 82-163 (243)
139 KOG1548 Transcription elongati 97.6 0.0001 2.2E-09 82.0 7.0 74 362-435 134-219 (382)
140 KOG4676 Splicing factor, argin 97.5 3.7E-05 8E-10 86.3 1.5 157 278-436 8-225 (479)
141 KOG4209 Splicing factor RNPS1, 97.4 0.00015 3.2E-09 78.5 5.1 79 358-437 97-180 (231)
142 PF11608 Limkain-b1: Limkain b 97.4 0.00056 1.2E-08 62.6 7.8 69 363-436 3-76 (90)
143 KOG1365 RNA-binding protein Fu 97.4 0.0017 3.6E-08 73.2 12.3 155 275-431 58-237 (508)
144 KOG0226 RNA-binding proteins [ 97.3 0.00019 4.1E-09 77.1 4.6 77 275-351 188-269 (290)
145 PF04059 RRM_2: RNA recognitio 97.3 0.00074 1.6E-08 63.8 8.1 81 363-443 2-93 (97)
146 KOG0129 Predicted RNA-binding 97.3 0.0013 2.8E-08 76.7 11.5 160 147-333 258-432 (520)
147 PF11608 Limkain-b1: Limkain b 97.3 0.0006 1.3E-08 62.4 6.8 69 278-351 3-76 (90)
148 KOG4209 Splicing factor RNPS1, 97.3 0.00027 5.9E-09 76.5 5.4 79 272-351 96-179 (231)
149 KOG4307 RNA binding protein RB 97.2 0.00049 1.1E-08 81.9 7.0 163 275-438 309-515 (944)
150 KOG4210 Nuclear localization s 97.2 0.0011 2.5E-08 73.9 8.8 79 275-354 182-266 (285)
151 KOG0128 RNA-binding protein SA 97.2 9.1E-05 2E-09 90.0 0.0 148 277-425 571-735 (881)
152 PF08777 RRM_3: RNA binding mo 97.1 0.00093 2E-08 63.9 6.3 78 363-441 2-84 (105)
153 COG5175 MOT2 Transcriptional r 97.0 0.00077 1.7E-08 74.6 4.5 87 276-371 113-213 (480)
154 COG5175 MOT2 Transcriptional r 96.9 0.0027 5.8E-08 70.5 8.5 78 361-438 113-204 (480)
155 KOG1855 Predicted RNA-binding 96.6 0.0025 5.5E-08 72.8 5.6 75 350-424 219-311 (484)
156 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0074 1.6E-07 57.4 6.8 73 362-436 6-91 (100)
157 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0066 1.4E-07 51.1 5.4 52 363-416 2-53 (53)
158 PF08777 RRM_3: RNA binding mo 96.3 0.0092 2E-07 57.2 6.4 59 278-337 2-60 (105)
159 KOG1855 Predicted RNA-binding 96.2 0.0045 9.8E-08 70.8 4.2 78 270-347 224-319 (484)
160 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.011 2.3E-07 49.9 5.1 52 278-331 2-53 (53)
161 KOG3152 TBP-binding protein, a 96.1 0.0037 7.9E-08 67.6 2.8 68 361-428 73-157 (278)
162 KOG1995 Conserved Zn-finger pr 96.0 0.0057 1.2E-07 68.9 4.1 79 361-439 65-156 (351)
163 KOG0115 RNA-binding protein p5 95.8 0.011 2.4E-07 64.0 4.9 90 325-425 5-98 (275)
164 KOG1295 Nonsense-mediated deca 95.7 0.0054 1.2E-07 69.8 2.2 74 811-885 6-81 (376)
165 KOG1995 Conserved Zn-finger pr 95.6 0.011 2.4E-07 66.6 4.3 79 274-352 63-154 (351)
166 KOG2202 U2 snRNP splicing fact 95.4 0.0076 1.7E-07 65.3 2.1 64 377-440 83-151 (260)
167 KOG0112 Large RNA-binding prot 95.4 0.02 4.4E-07 70.7 5.7 80 273-353 451-532 (975)
168 KOG1996 mRNA splicing factor [ 95.2 0.037 8E-07 60.9 6.5 61 376-436 300-366 (378)
169 KOG3152 TBP-binding protein, a 95.2 0.012 2.7E-07 63.7 2.7 69 275-343 72-157 (278)
170 PF08952 DUF1866: Domain of un 94.9 0.064 1.4E-06 54.2 6.7 76 360-439 25-109 (146)
171 KOG4307 RNA binding protein RB 94.9 0.043 9.3E-07 66.1 6.3 71 277-347 867-942 (944)
172 PF05172 Nup35_RRM: Nup53/35/4 94.3 0.076 1.7E-06 50.6 5.3 72 276-349 5-89 (100)
173 KOG2314 Translation initiation 94.2 0.09 1.9E-06 62.3 6.6 67 275-341 56-132 (698)
174 KOG4676 Splicing factor, argin 94.1 0.047 1E-06 62.1 4.1 72 363-435 8-87 (479)
175 PF07576 BRAP2: BRCA1-associat 94.1 0.31 6.7E-06 47.3 9.0 85 811-898 11-96 (110)
176 KOG2314 Translation initiation 93.9 0.16 3.4E-06 60.4 8.0 74 361-434 57-141 (698)
177 KOG2193 IGF-II mRNA-binding pr 93.6 0.056 1.2E-06 62.0 3.5 78 363-441 2-80 (584)
178 KOG0804 Cytoplasmic Zn-finger 93.5 0.24 5.2E-06 57.7 8.3 81 812-896 74-154 (493)
179 KOG2202 U2 snRNP splicing fact 93.0 0.038 8.3E-07 60.1 1.1 57 293-349 84-145 (260)
180 KOG4849 mRNA cleavage factor I 93.0 0.075 1.6E-06 59.7 3.3 72 275-346 78-156 (498)
181 PF15023 DUF4523: Protein of u 92.8 0.37 8E-06 48.6 7.4 75 359-436 83-161 (166)
182 KOG2416 Acinus (induces apopto 92.0 0.13 2.7E-06 61.5 3.7 79 359-438 441-523 (718)
183 KOG2068 MOT2 transcription fac 91.9 0.1 2.2E-06 58.9 2.6 106 362-468 77-197 (327)
184 KOG2416 Acinus (induces apopto 91.2 0.15 3.2E-06 61.0 3.0 68 271-339 438-506 (718)
185 PF08952 DUF1866: Domain of un 91.1 0.37 8.1E-06 48.9 5.3 73 275-351 25-106 (146)
186 PF15023 DUF4523: Protein of u 90.1 0.77 1.7E-05 46.4 6.5 75 272-349 81-159 (166)
187 PF08675 RNA_bind: RNA binding 89.9 1.2 2.5E-05 41.4 7.0 56 277-336 9-64 (87)
188 KOG2135 Proteins containing th 89.6 0.41 8.9E-06 56.1 4.8 73 364-438 374-447 (526)
189 PF04847 Calcipressin: Calcipr 89.6 0.67 1.5E-05 48.9 6.1 63 375-438 8-72 (184)
190 KOG1996 mRNA splicing factor [ 89.2 0.54 1.2E-05 52.1 5.1 75 276-350 280-365 (378)
191 KOG2591 c-Mpl binding protein, 89.1 0.64 1.4E-05 55.4 5.9 73 273-347 171-247 (684)
192 KOG2591 c-Mpl binding protein, 88.4 0.85 1.8E-05 54.4 6.3 98 323-432 146-247 (684)
193 KOG4285 Mitotic phosphoprotein 87.9 2.2 4.7E-05 47.8 8.6 74 362-438 197-271 (350)
194 KOG2068 MOT2 transcription fac 87.8 0.34 7.3E-06 54.8 2.5 77 277-353 77-164 (327)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 86.8 0.9 2E-05 47.6 4.9 68 275-342 5-83 (176)
196 PF10309 DUF2414: Protein of u 84.7 2.9 6.2E-05 36.8 6.1 55 362-419 5-62 (62)
197 KOG4849 mRNA cleavage factor I 83.8 0.98 2.1E-05 51.1 3.6 79 363-441 81-166 (498)
198 PF10309 DUF2414: Protein of u 82.8 4.4 9.5E-05 35.6 6.4 54 277-334 5-62 (62)
199 KOG4574 RNA-binding protein (c 82.4 0.92 2E-05 56.4 2.9 75 363-438 299-375 (1007)
200 PF08675 RNA_bind: RNA binding 81.7 5.8 0.00013 36.9 7.1 54 364-421 11-64 (87)
201 KOG4285 Mitotic phosphoprotein 79.4 3.6 7.7E-05 46.2 5.9 64 277-343 197-260 (350)
202 PF04847 Calcipressin: Calcipr 76.1 2.9 6.3E-05 44.2 3.9 62 290-352 8-71 (184)
203 KOG0115 RNA-binding protein p5 75.2 2.8 6.1E-05 46.1 3.6 59 278-336 32-94 (275)
204 KOG2135 Proteins containing th 75.0 1.3 2.8E-05 52.1 1.1 78 274-353 369-447 (526)
205 KOG2253 U1 snRNP complex, subu 74.9 2.5 5.5E-05 51.6 3.5 72 359-434 37-108 (668)
206 PF03880 DbpA: DbpA RNA bindin 74.1 6.7 0.00015 35.1 5.2 59 372-434 11-74 (74)
207 PF07292 NID: Nmi/IFP 35 domai 73.7 2.6 5.6E-05 39.5 2.5 68 317-384 1-74 (88)
208 PF07576 BRAP2: BRCA1-associat 72.4 21 0.00046 34.8 8.5 63 364-426 15-81 (110)
209 PF14111 DUF4283: Domain of un 70.6 7.4 0.00016 38.7 5.2 102 292-397 36-140 (153)
210 PF11767 SET_assoc: Histone ly 69.1 12 0.00026 33.3 5.5 55 373-431 11-65 (66)
211 PF10567 Nab6_mRNP_bdg: RNA-re 63.0 57 0.0012 37.0 10.4 145 275-420 13-212 (309)
212 KOG0804 Cytoplasmic Zn-finger 59.7 18 0.0004 42.8 6.2 65 362-426 74-142 (493)
213 PF11767 SET_assoc: Histone ly 58.8 24 0.00052 31.4 5.5 55 288-346 11-65 (66)
214 KOG4574 RNA-binding protein (c 54.1 6.1 0.00013 49.6 1.4 74 279-353 300-375 (1007)
215 KOG2253 U1 snRNP complex, subu 52.8 10 0.00022 46.7 2.8 72 273-348 36-107 (668)
216 KOG4019 Calcineurin-mediated s 49.4 19 0.0004 38.1 3.8 74 364-438 12-91 (193)
217 KOG2318 Uncharacterized conser 47.6 63 0.0014 39.6 8.2 129 272-433 169-304 (650)
218 PF03880 DbpA: DbpA RNA bindin 47.3 41 0.00088 30.1 5.2 58 288-349 12-74 (74)
219 KOG2891 Surface glycoprotein [ 31.0 17 0.00036 40.5 0.1 62 278-339 150-247 (445)
220 PRK14548 50S ribosomal protein 29.8 1.1E+02 0.0023 28.7 5.1 55 364-418 22-80 (84)
221 KOG4483 Uncharacterized conser 29.5 1.1E+02 0.0025 35.9 6.2 55 361-417 390-445 (528)
222 TIGR03636 L23_arch archaeal ri 27.8 1.3E+02 0.0028 27.7 5.1 54 364-417 15-72 (77)
223 KOG4019 Calcineurin-mediated s 23.7 45 0.00097 35.4 1.6 74 278-352 11-90 (193)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-70 Score=619.66 Aligned_cols=518 Identities=50% Similarity=0.719 Sum_probs=367.5
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001976 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
++++.|...+||+++++....+....+ ....++....+++..+ .++ || .+|..+|++|+
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~~~~--------~~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~~~- 60 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSVRNS--------DRNSAGFVFPEHPPGE--SRT-FV---------SELSALFEPFN- 60 (549)
T ss_pred CccccccCCCCCCcccccccchhhccc--------ccCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhccC-
Confidence 345789999999999665432222111 1233345556777776 566 77 78888998881
Q ss_pred EEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHh
Q 001976 304 IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383 (987)
Q Consensus 304 I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelF 383 (987)
+.+ +++.+.+++.++++|+|.|||..|++++|+++|
T Consensus 61 ---------------------------------~p~-----------~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f 96 (549)
T KOG4660|consen 61 ---------------------------------KPL-----------RPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIF 96 (549)
T ss_pred ---------------------------------CCC-----------CcCCCCcccCccceEEEEecCCcCCHHHHHHHH
Confidence 111 114555677889999999999999999999999
Q ss_pred hccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhcc-chhhhhccCCccc----cC
Q 001976 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFM-VQSEQEQDDLNLC----QI 458 (987)
Q Consensus 384 s~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rrl~-qq~eq~q~e~nly----kn 458 (987)
+.||+|+.|+..+..++.+||+|+|+.+|++|+++||+.+|.|++|+ ++...++.+ -+.. ..++ ..
T Consensus 97 ~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~-----~~~~~~~~~p 167 (549)
T KOG4660|consen 97 GAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG-----TSFLNHFGSP 167 (549)
T ss_pred HhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc-----chhhhhccch
Confidence 99999999999999999999999999999999999999999999999 666666522 1111 2222 33
Q ss_pred CCCCCCccccccccceEEEecCCCCccccccCCCCCccccccccccCCCCCCCCCCcccCcCCccccccCCCCccccccc
Q 001976 459 PFDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQFGHYEPNLSLDEMKF 538 (987)
Q Consensus 459 Lp~svt~e~L~~fG~I~S~~~~nG~~rgf~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (987)
+..++.+.+- ++ .+..+|.|.. +++ +.++..+++.-.-
T Consensus 168 ~a~s~pgg~~----------------~~---~~~g~l~P~~----s~~-------------------~~~~~~~~~~~~~ 205 (549)
T KOG4660|consen 168 LANSPPGGWP----------------RG---QLFGMLSPTR----SSI-------------------LLEHISSVDGSSP 205 (549)
T ss_pred hhcCCCCCCc----------------CC---cceeeeccch----hhh-------------------hhhcchhccCccc
Confidence 4444443321 11 0000122221 111 1111111111101
Q ss_pred CCC-CCCCCCCCcccccccccCCCCCCCCCcccccccccCCcccCCCCCCCccccCCCCCCCCCCCCccCCCCCCCccCC
Q 001976 539 GNQ-HPSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVSSNGHLMEPTGGVFGSPRNGSYSLH 617 (987)
Q Consensus 539 ~~~-~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 617 (987)
+ + .+-++ | .+...++.+.+|..+ .. . + |.++-...++.+ ++
T Consensus 206 ~-~~~~~~~-h---q~~~~~~~~~s~a~~----~~------------------~-~--G~~~s~~~~v~t--------~S 247 (549)
T KOG4660|consen 206 G-RETPLLN-H---QRFVEFADNRSYAFS----EP------------------R-G--GFLISNSSGVIT--------FS 247 (549)
T ss_pred c-ccccchh-h---hhhhhhccccchhhc----cc------------------C-C--ceecCCCCceEE--------ec
Confidence 1 1 11221 1 223334334433211 00 0 0 332211123333 33
Q ss_pred CCCccCCCCCCCCCCCCCCCcCCCCCCccCCcccCCCCCCCCCCCCCcccccCCCC-CcccccCCCCCCCCccccccccC
Q 001976 618 GNPYVWNNSNSHQQHPSSPMVWPNSPSFLNGLHANRVAHMPGFPRVPPLMLNATSP-AHHHIGSAPAVNPSLWDRQHAYA 696 (987)
Q Consensus 618 g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gsap~~~~~~~~~~~~~~ 696 (987)
|+ .++| |++.+++..| +.+.. .|||||+||+.
T Consensus 248 ~~----------------~g~~-------n~~~~~r~~~------------~~~~~~~~~hi~~~Ps~------------ 280 (549)
T KOG4660|consen 248 GP----------------GGVW-------NPFPSRRQRQ------------NSSSSHYEHHIGSAPSM------------ 280 (549)
T ss_pred CC----------------Cccc-------CCcccccccc------------ccCcccccCccCCCccc------------
Confidence 32 1344 3333332111 12212 38999999982
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCcccccc--cccccccCCCCccCcC-CCCCCCCcccccCCCCCCCCCccccccccc
Q 001976 697 GESPETSNFHLGSLGSGGFLGRSPSHHVDIA--SQNILSHVGGNCMDMT-KNVGMRSPQQICHLFPGRNPMMSMQTSFDS 773 (987)
Q Consensus 697 ~~~~~~~~~~~g~~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~ 773 (987)
.|+..-++++|.+..+.+.|... ....+.+..|++++.. +++++.+.++..+.|.++.-+. ...+.
T Consensus 281 --------~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~---~~~~~ 349 (549)
T KOG4660|consen 281 --------HHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT---SQNDY 349 (549)
T ss_pred --------ccccccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCcccccccccc---ccccc
Confidence 24445566777766665555444 2345667889998888 9999999999999999887443 34566
Q ss_pred hhHHhhhccccccCCCCccccccccccchhhhhcCCCCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeccccccc
Q 001976 774 SNERMRNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNK 853 (987)
Q Consensus 774 ~~~~~r~~~~~~~~~~~~~~~~~~~~~d~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~ 853 (987)
..+..+++..||.+.+....+++++.+|+.+|++|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+
T Consensus 350 ~~~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nk 428 (549)
T KOG4660|consen 350 PVELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNK 428 (549)
T ss_pred ccccccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccc
Confidence 56644445558888777777899999999999999999999999999999999999999 99999999999999999999
Q ss_pred ceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEEEEeecccCHHHHHHHhccCccccCCCCccceEEecCCCCCCC
Q 001976 854 CNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGD 933 (987)
Q Consensus 854 ~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~v~yA~iQG~~ali~hf~~s~~~~~~~~~rP~~f~~~g~~~g~ 933 (987)
||||||||||++|++|++||++|||++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ |+.|.
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~ 506 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGR 506 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 89999
Q ss_pred CCCCCCCCCccCCCCCCCccCcc
Q 001976 934 PEPFPMGTNIRSRLGKPRINGNE 956 (987)
Q Consensus 934 ~~~fp~~~n~~~~~~~~r~~~~~ 956 (987)
++++|...+++.+.+.++.....
T Consensus 507 ~~~~p~~~~~~a~~~~s~~~~~~ 529 (549)
T KOG4660|consen 507 EEPEPVKLNQDAGAGHSTNASLK 529 (549)
T ss_pred ccCccccccccCCCCcccchhhh
Confidence 99999999999877777766655
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=1.6e-45 Score=341.49 Aligned_cols=97 Identities=65% Similarity=1.188 Sum_probs=96.3
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEE
Q 001976 812 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVAS 891 (987)
Q Consensus 812 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~ 891 (987)
|||||||||||||||+||+++||+.|+|+||||||||||+++||+|||||||+++++|.+|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCHHHHHHHhc
Q 001976 892 LAYARIQGKAALIAHFQ 908 (987)
Q Consensus 892 v~yA~iQG~~ali~hf~ 908 (987)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999996
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.1e-36 Score=355.95 Aligned_cols=276 Identities=22% Similarity=0.347 Sum_probs=232.7
Q ss_pred ccCCCCeeeecccCCCCCcccCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCCh-hh
Q 001976 125 NSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE-DD 202 (987)
Q Consensus 125 ~~~~gk~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpde-dD 202 (987)
..++|++|+|+|++||++++++...+|||+||+. ++++.|++. | +.+|+|+..+ ..
T Consensus 65 ~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~--------------F--------~~~G~i~~~~i~~ 122 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDT--------------F--------SKFGNILSCKVAT 122 (562)
T ss_pred CEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHH--------------H--------HhcCCcceeEeee
Confidence 4589999999999999999999999999999998 899899988 8 6677777621 01
Q ss_pred hhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 001976 203 LFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFV 282 (987)
Q Consensus 203 L~sG~SkGfGFV~f~~t~Eaaeei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfV 282 (987)
...|.++|||||+| ++.++|+ +|++.+||+.+. ++.+.++.......+ + .......++|||
T Consensus 123 ~~~g~skg~afV~F-~~~e~A~--~Ai~~lng~~~~-~~~i~v~~~~~~~~~--------------~-~~~~~~~~~l~V 183 (562)
T TIGR01628 123 DENGKSRGYGFVHF-EKEESAK--AAIQKVNGMLLN-DKEVYVGRFIKKHER--------------E-AAPLKKFTNLYV 183 (562)
T ss_pred cCCCCcccEEEEEE-CCHHHHH--HHHHHhcccEec-CceEEEecccccccc--------------c-cccccCCCeEEE
Confidence 12678999999995 5777777 799999999998 666666554331111 0 113345689999
Q ss_pred ccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccc----cccccccccCCCCC
Q 001976 283 RNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR----RRKLDIHYSIPKDN 354 (987)
Q Consensus 283 gNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~----Gr~L~V~~a~pk~~ 354 (987)
+|||.++|+++|+++|++||+|.++++ +++++|||||+|.+.++|.+|++.|+|..+. |+.+.|.++..+.+
T Consensus 184 ~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 184 KNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred eCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 999999999999999999999999876 4678899999999999999999999999999 99999988876654
Q ss_pred CCc--------------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHH
Q 001976 355 PSE--------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETAL 416 (987)
Q Consensus 355 ~~~--------------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL 416 (987)
+.. ......+|||+||+..+++++|+++|++||.|++|+++.+ ++|||||+|.+.++|.+|+
T Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~ 343 (562)
T TIGR01628 264 REAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAV 343 (562)
T ss_pred hHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHH
Confidence 310 1223468999999999999999999999999999998643 5799999999999999999
Q ss_pred HHhCCCeeCCcEEEEEeccCCchhh
Q 001976 417 RTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 417 ~~LNG~~I~Gr~LkV~~a~~k~~Rr 441 (987)
..|||+.|+|++|+|.++.++..|+
T Consensus 344 ~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 344 TEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred HHhcCCeeCCceeEEEeccCcHHHH
Confidence 9999999999999999999998776
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.9e-34 Score=339.63 Aligned_cols=294 Identities=19% Similarity=0.274 Sum_probs=233.4
Q ss_pred ccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhhh
Q 001976 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 150 ~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~Eaaeei 226 (987)
.|||+||+. ++.+.|++. | +.+|.|... ..|..++.++|||||.|. +.++|+
T Consensus 2 sl~VgnLp~~vte~~L~~~--------------F--------~~~G~v~~v~v~~d~~t~~s~G~afV~F~-~~~~A~-- 56 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDL--------------F--------KPFGPVLSVRVCRDSVTRRSLGYGYVNFQ-NPADAE-- 56 (562)
T ss_pred eEEEeCCCCCCCHHHHHHH--------------H--------HhcCCEEEEEEEecCCCCCcceEEEEEEC-CHHHHH--
Confidence 599999997 888888888 8 444544441 123346889999999954 777777
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE
Q 001976 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (987)
Q Consensus 227 ~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 306 (987)
+|++.+|+..+. ++.+.+... .. .........++|||+|||.++++++|+++|++||.|.+
T Consensus 57 ~Al~~ln~~~i~-gk~i~i~~s----------------~~--~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~ 117 (562)
T TIGR01628 57 RALETMNFKRLG-GKPIRIMWS----------------QR--DPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILS 117 (562)
T ss_pred HHHHHhCCCEEC-CeeEEeecc----------------cc--cccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcce
Confidence 799999999887 433322110 00 00112223568999999999999999999999999999
Q ss_pred EEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC-CcccccccceeeecCCCCCCHHHHHH
Q 001976 307 IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-SEKDANQGTLVVFNLDSSVSTEELHQ 381 (987)
Q Consensus 307 Vki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~-~~~~~~~~tLfV~NLp~~vTeedLre 381 (987)
|++ +++++|||||+|.+.++|++|++.++|..+.++.|.|....++..+ .......++|||+|||.++++++|++
T Consensus 118 ~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 118 CKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred eEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 876 4678999999999999999999999999999999999877665544 22334567899999999999999999
Q ss_pred HhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEeccCCchhh--ccchhhhh--
Q 001976 382 IFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVA----GKQIKLEASRPGGARR--FMVQSEQE-- 449 (987)
Q Consensus 382 lFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~----Gr~LkV~~a~~k~~Rr--l~qq~eq~-- 449 (987)
+|++||+|.++++..+ .+|||||+|.+.++|.+|++.|||..|. |+.|.|.+++.+.++. +....++.
T Consensus 198 ~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~ 277 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQ 277 (562)
T ss_pred HHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhh
Confidence 9999999999988643 5789999999999999999999999999 9999999999887663 22111111
Q ss_pred -----ccCCccc-cCCCCCCCcccc----ccccceEEE---ecCCCCcccc
Q 001976 450 -----QDDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVL 487 (987)
Q Consensus 450 -----q~e~nly-knLp~svt~e~L----~~fG~I~S~---~~~nG~~rgf 487 (987)
....+|| +||+..+++++| +.||+|+++ .+..|.++||
T Consensus 278 ~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~ 328 (562)
T TIGR01628 278 ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGF 328 (562)
T ss_pred hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCe
Confidence 1226788 999999999999 999999998 4467888886
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.5e-32 Score=307.28 Aligned_cols=247 Identities=17% Similarity=0.290 Sum_probs=195.8
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhh
Q 001976 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~Eaae 224 (987)
-.+|||+||+. ++.+.|++. | ..+|.|... ..|..+|.++|||||.|. +.++|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~--------------F--------~~~G~i~~v~i~~d~~~g~s~g~afV~f~-~~~~A~ 59 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSL--------------F--------TSIGEIESCKLVRDKVTGQSLGYGFVNYV-RPEDAE 59 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHH--------------H--------HccCCEEEEEEEEcCCCCccceEEEEEEC-cHHHHH
Confidence 35799999987 888889888 8 555555441 122347889999999955 667777
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001976 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 ei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
+|++.++|..|. ++.+.+..... .......++|||+|||.++++++|+++|++||.|
T Consensus 60 --~Ai~~l~g~~l~-g~~i~v~~a~~--------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 116 (352)
T TIGR01661 60 --KAVNSLNGLRLQ-NKTIKVSYARP--------------------SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQI 116 (352)
T ss_pred --HHHhhcccEEEC-CeeEEEEeecc--------------------cccccccceEEECCccccCCHHHHHHHHhccCCE
Confidence 799999999998 44444322111 0112245789999999999999999999999999
Q ss_pred EEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCCCC----------------cc---
Q 001976 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNPS----------------EK--- 358 (987)
Q Consensus 305 ~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~pk~~~~----------------~~--- 358 (987)
..+++ ++.++|||||+|.+.++|++|++.|+|..+.| ++|.|.++....... ..
T Consensus 117 ~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T TIGR01661 117 ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPL 196 (352)
T ss_pred EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCc
Confidence 98865 45689999999999999999999999999877 567777664332100 00
Q ss_pred ---------------------------------------------------------------------cccccceeeec
Q 001976 359 ---------------------------------------------------------------------DANQGTLVVFN 369 (987)
Q Consensus 359 ---------------------------------------------------------------------~~~~~tLfV~N 369 (987)
.....+|||+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~N 276 (352)
T TIGR01661 197 STILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYN 276 (352)
T ss_pred cccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeC
Confidence 00112599999
Q ss_pred CCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 001976 370 LDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 370 Lp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~R 440 (987)
||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+||+.|||..|+||+|+|.|+..+..|
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCCC
Confidence 9999999999999999999999998654 5999999999999999999999999999999999999987643
No 6
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-31 Score=301.69 Aligned_cols=271 Identities=22% Similarity=0.336 Sum_probs=230.4
Q ss_pred cccCCCCeeeecccCCCCCcccCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCCh-h
Q 001976 124 INSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE-D 201 (987)
Q Consensus 124 ~~~~~gk~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpde-d 201 (987)
...++||+|||||++||+++ ||++||+. +|++.||++ | +.+|+|||++ .
T Consensus 59 ~~~~~~~~~rim~s~rd~~~-------~~i~nl~~~~~~~~~~d~--------------f--------~~~g~ilS~kv~ 109 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDPSL-------VFIKNLDESIDNKSLYDT--------------F--------SEFGNILSCKVA 109 (369)
T ss_pred CcccCCcEEEeehhccCCce-------eeecCCCcccCcHHHHHH--------------H--------HhhcCeeEEEEE
Confidence 46899999999999999998 99999987 999999999 9 9999999933 1
Q ss_pred hhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEE
Q 001976 202 DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLF 281 (987)
Q Consensus 202 DL~sG~SkGfGFV~f~~t~Eaaeei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLf 281 (987)
.-..| ++|| ||+ |+++++|+ +|++.+||+.+. +.++++|.+.....+.. .... .......+|
T Consensus 110 ~~~~g-~kg~-FV~-f~~e~~a~--~ai~~~ng~ll~-~kki~vg~~~~~~er~~-----------~~~~-~~~~~t~v~ 171 (369)
T KOG0123|consen 110 TDENG-SKGY-FVQ-FESEESAK--KAIEKLNGMLLN-GKKIYVGLFERKEEREA-----------PLGE-YKKRFTNVY 171 (369)
T ss_pred EcCCC-ceee-EEE-eCCHHHHH--HHHHHhcCcccC-CCeeEEeeccchhhhcc-----------cccc-hhhhhhhhh
Confidence 11145 9999 999 55777777 799999999998 77888888766322110 0111 234568999
Q ss_pred EccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCC-
Q 001976 282 VRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS- 356 (987)
Q Consensus 282 VgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~- 356 (987)
|+|++.++++++|.++|..||+|.++.+ .+++++|+||.|++.++|..|++.|++..+.+..+.|..+..+.+..
T Consensus 172 vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~ 251 (369)
T KOG0123|consen 172 VKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREA 251 (369)
T ss_pred eeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHH
Confidence 9999999999999999999999999975 56789999999999999999999999999999999998887643321
Q ss_pred -------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHh
Q 001976 357 -------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 357 -------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~----~skG~aFVeF~d~edA~kAL~~L 419 (987)
.......+|||+||+..++.+.|+++|+.||+|.+++++. ..+||+||+|.+.++|.+|+..+
T Consensus 252 ~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~ 331 (369)
T KOG0123|consen 252 ELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEM 331 (369)
T ss_pred HHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhh
Confidence 1133456999999999999999999999999999988864 36899999999999999999999
Q ss_pred CCCeeCCcEEEEEeccCCchhh
Q 001976 420 NRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 420 NG~~I~Gr~LkV~~a~~k~~Rr 441 (987)
|+..+.+++|.|.+++.+..|+
T Consensus 332 n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 332 NGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred ChhhhcCCchhhhHHhhhccch
Confidence 9999999999999999777665
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.3e-29 Score=297.09 Aligned_cols=292 Identities=16% Similarity=0.181 Sum_probs=212.4
Q ss_pred ccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHH
Q 001976 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDL 228 (987)
Q Consensus 150 ~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~A 228 (987)
.|||+||++ +++++|++. | +.+|.|.... +. .+||||||+|. +.++|+ .|
T Consensus 4 vv~V~nLp~~~te~~L~~~--------------f--------~~fG~V~~v~--i~--~~k~~afVef~-~~e~A~--~A 54 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEA--------------L--------IPFGPVSYVM--ML--PGKRQALVEFE-DEESAK--AC 54 (481)
T ss_pred EEEEcCCCCCCCHHHHHHH--------------H--------HhcCCeeEEE--EE--CCCCEEEEEeC-chHHHH--HH
Confidence 699999998 888889888 8 5566555421 11 26789999955 677777 68
Q ss_pred Hhc--cCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE
Q 001976 229 FSS--GGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (987)
Q Consensus 229 i~~--~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 306 (987)
+.. +++..+. ++.+.+.......... .. +.. ..........+|||+||+..+|+++|+++|+.||+|..
T Consensus 55 i~~~~~~~~~l~-g~~l~v~~s~~~~~~~---~~--~~~---~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 55 VNFATSVPIYIR-GQPAFFNYSTSQEIKR---DG--NSD---FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred HHHhhcCCceEc-CeEEEEEecCCccccc---CC--CCc---ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 875 5788888 5545444322110000 00 000 00111223458999999999999999999999999999
Q ss_pred EEec-ccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCC--------------------C--------
Q 001976 307 IYTA-CKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN--------------------P-------- 355 (987)
Q Consensus 307 Vkit-gksrGfAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~pk~~--------------------~-------- 355 (987)
|++. ...+++|||+|.+.++|.+|++.|||+.|.+ +.|+|.|+.+..- +
T Consensus 126 v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~ 205 (481)
T TIGR01649 126 IVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTH 205 (481)
T ss_pred EEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccc
Confidence 9873 3334799999999999999999999999965 4677766653210 0
Q ss_pred ---Cc------------------------------------------------------------ccccccceeeecCCC
Q 001976 356 ---SE------------------------------------------------------------KDANQGTLVVFNLDS 372 (987)
Q Consensus 356 ---~~------------------------------------------------------------~~~~~~tLfV~NLp~ 372 (987)
.. .....++|||+|||+
T Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~ 285 (481)
T TIGR01649 206 RQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQ 285 (481)
T ss_pred cccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCC
Confidence 00 001345899999998
Q ss_pred -CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhc---------
Q 001976 373 -SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRF--------- 442 (987)
Q Consensus 373 -~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rrl--------- 442 (987)
.+++++|+++|+.||.|.+|+++.+++|+|||+|.+.++|.+||+.|||..|.|++|+|.+++.......
T Consensus 286 ~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR01649 286 EKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGL 365 (481)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCC
Confidence 6999999999999999999999988899999999999999999999999999999999999865421100
Q ss_pred c--chh---h------hh--------ccCCccc-cCCCCCCCcccc----ccccc--eEEEec
Q 001976 443 M--VQS---E------QE--------QDDLNLC-QIPFDDLSSGQM----VSSGV--ITSTCM 479 (987)
Q Consensus 443 ~--qq~---e------q~--------q~e~nly-knLp~svt~e~L----~~fG~--I~S~~~ 479 (987)
. +.. . .. ....+|| +|||.++++++| +.||. |+.++.
T Consensus 366 ~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 366 TSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred cccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 0 000 0 00 0114688 999999999999 88897 777744
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=9.9e-30 Score=299.85 Aligned_cols=236 Identities=21% Similarity=0.305 Sum_probs=190.3
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhh
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
.+|||+||+. ++++.|.+. |+ .+|.|... ..| .+|.++|||||+| .+.|+|+
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~--------------F~--------~~G~I~~vrl~~D-~sG~sRGfaFV~F-~~~e~A~- 113 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPL--------------FE--------KAGPIYELRLMMD-FSGQNRGYAFVTF-CGKEEAK- 113 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHH--------------HH--------hhCCEEEEEEEEC-CCCCccceEEEEe-CCHHHHH-
Confidence 5899999997 888888888 83 34433331 122 4889999999995 5777777
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc-E
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-I 304 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~-I 304 (987)
+|++.+||.++..++.+.+ . .....++|||+|||.++++++|.+.|++++. +
T Consensus 114 -~Ai~~lng~~i~~Gr~l~V----------------~----------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 114 -EAVKLLNNYEIRPGRLLGV----------------C----------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred -HHHHHcCCCeecCCccccc----------------c----------ccccCceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 7999999998863332111 0 1123689999999999999999999999964 3
Q ss_pred EEEEe------cccccceEEEEeCCHHHHHHHHHHccC--cccccccccccccCCCCCCCcc-cccccceeeecCCCCCC
Q 001976 305 RTIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSIPKDNPSEK-DANQGTLVVFNLDSSVS 375 (987)
Q Consensus 305 ~sVki------tgksrGfAFV~F~d~e~A~kAl~~LnG--~~i~Gr~L~V~~a~pk~~~~~~-~~~~~tLfV~NLp~~vT 375 (987)
..+.+ .++++|||||+|.+.++|..|++.|+. ..+.|+.|.|.|+.++....+. ....++|||+||+..++
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~t 246 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTT 246 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCC
Confidence 33322 356899999999999999999998864 4578999999999887654322 23456899999999999
Q ss_pred HHHHHHHhhcc--CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 376 TEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 376 eedLrelFs~f--G~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
+++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.|||.+|.|++|+|.|++++..
T Consensus 247 ee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 247 EEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999 999999875 57999999999999999999999999999999999998654
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.9e-28 Score=287.15 Aligned_cols=287 Identities=18% Similarity=0.209 Sum_probs=205.7
Q ss_pred cccCCCCeeeecccCCCCCcc----------cCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeE
Q 001976 124 INSLSGNRSGINGIQSESSLF----------SSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQT 192 (987)
Q Consensus 124 ~~~~~gk~i~im~s~rd~sl~----------sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~ 192 (987)
...+.|++|+|+|+.+...-+ .+....||++||.. ++.+.|+.. | ..
T Consensus 62 ~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~--------------F--------~~ 119 (481)
T TIGR01649 62 PIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQI--------------F--------NP 119 (481)
T ss_pred CceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHH--------------H--------hc
Confidence 457899999999986542111 12344689999986 888888888 8 44
Q ss_pred ecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCc-ccc----------eeccccc---ccCC-CC
Q 001976 193 IGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDD-RLF----------AVQKNSD---FVGG-VS 257 (987)
Q Consensus 193 iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~Ai~~~nG~eLegd~-~v~----------vg~~~s~---~~~~-~~ 257 (987)
+|.|+... +..-...|+|||+|. +.++|+ +|++.+||.++.++. .+. |.+.... ++.. ..
T Consensus 120 ~G~V~~v~--i~~~~~~~~afVef~-~~~~A~--~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 120 YGKVLRIV--TFTKNNVFQALVEFE-SVNSAQ--HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred cCCEEEEE--EEecCCceEEEEEEC-CHHHHH--HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 55554411 001112469999955 666666 799999999997432 111 1110000 0000 00
Q ss_pred ---C----------CCCC----------CC---------------Cc---------------CCC--------CCCCCCC
Q 001976 258 ---N----------QGVS----------AG---------------SV---------------VGE--------HPYGEHP 276 (987)
Q Consensus 258 ---n----------~~~~----------~~---------------~~---------------~ge--------~~~~e~~ 276 (987)
. .... .+ .+ ... .+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (481)
T TIGR01649 195 GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGP 274 (481)
T ss_pred CCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCC
Confidence 0 0000 00 00 000 0011346
Q ss_pred CcEEEEccCCC-CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001976 277 SRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (987)
Q Consensus 277 srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~ 355 (987)
+++|||+|||+ .+|+++|+++|++||.|..|++....+|||||+|.+.++|++|++.|||..|.|++|+|.++..+...
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 78999999998 69999999999999999999985556899999999999999999999999999999999887543110
Q ss_pred Cc------------c---------------------cccccceeeecCCCCCCHHHHHHHhhccCC--EEEEEEcCCC--
Q 001976 356 SE------------K---------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQHK-- 398 (987)
Q Consensus 356 ~~------------~---------------------~~~~~tLfV~NLp~~vTeedLrelFs~fG~--I~~Vri~~~s-- 398 (987)
.. + ..+..+|||+|||..+++++|+++|+.||. |+.|++.+..
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~ 434 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE 434 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC
Confidence 00 0 013468999999999999999999999998 8889886543
Q ss_pred -CcEEEEEECCHHHHHHHHHHhCCCeeCCcE------EEEEeccCC
Q 001976 399 -HNHKFIEFYDIRAAETALRTLNRSDVAGKQ------IKLEASRPG 437 (987)
Q Consensus 399 -kG~aFVeF~d~edA~kAL~~LNG~~I~Gr~------LkV~~a~~k 437 (987)
+++|||+|.+.++|.+||..|||..|.++. |+|.|++++
T Consensus 435 ~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 789999999999999999999999999985 999999874
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1.2e-27 Score=267.87 Aligned_cols=159 Identities=22% Similarity=0.408 Sum_probs=143.5
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
+..+|||+|||.+++|++|+++|++||+|.+|++ +++++|||||+|.+.++|++||+.|+|..|.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999976 56789999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
++... ....+|||.|||..+++++|+++|++||.|..+++..+ .+|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76532 34568999999999999999999999999999887543 5789999999999999999999999997
Q ss_pred C--cEEEEEeccCCc
Q 001976 426 G--KQIKLEASRPGG 438 (987)
Q Consensus 426 G--r~LkV~~a~~k~ 438 (987)
| .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678999986544
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.8e-28 Score=266.81 Aligned_cols=242 Identities=21% Similarity=0.327 Sum_probs=193.9
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001976 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei 226 (987)
..+||+++|+. +.+++|... |+...+|-... | .-|-.+|.+|||+||+|. +-|+|+
T Consensus 83 G~EVfvGkIPrD~~EdeLvpl--------------fEkiG~I~elR----L--MmD~~sG~nRGYAFVtf~-~Ke~Aq-- 139 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPL--------------FEKIGKIYELR----L--MMDPFSGDNRGYAFVTFC-TKEEAQ-- 139 (506)
T ss_pred CceEEecCCCccccchhhHHH--------------HHhccceeeEE----E--eecccCCCCcceEEEEee-cHHHHH--
Confidence 35799999986 556566655 74444332111 1 123348999999999965 555556
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc-EE
Q 001976 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-IR 305 (987)
Q Consensus 227 ~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~-I~ 305 (987)
.||+.+|+.|+...+.+-| . -...+++|||+|||++.++++|++.|++.++ |+
T Consensus 140 ~Aik~lnn~Eir~GK~igv--c------------------------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVv 193 (506)
T KOG0117|consen 140 EAIKELNNYEIRPGKLLGV--C------------------------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVV 193 (506)
T ss_pred HHHHHhhCccccCCCEeEE--E------------------------EeeecceeEeccCCccccHHHHHHHHHhhCCCee
Confidence 5999999999874443211 1 1235689999999999999999999999986 55
Q ss_pred EEEe------cccccceEEEEeCCHHHHHHHHHHccC--cccccccccccccCCCCCCCcc-cccccceeeecCCCCCCH
Q 001976 306 TIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSIPKDNPSEK-DANQGTLVVFNLDSSVST 376 (987)
Q Consensus 306 sVki------tgksrGfAFV~F~d~e~A~kAl~~LnG--~~i~Gr~L~V~~a~pk~~~~~~-~~~~~tLfV~NLp~~vTe 376 (987)
+|.+ ..++||||||+|++...|..|-++|-. ..+.|..+.|.|+.|+.+.... ...-+.|||+||+.++|+
T Consensus 194 dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTe 273 (506)
T KOG0117|consen 194 DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTE 273 (506)
T ss_pred EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhH
Confidence 5533 578999999999999999999987643 5688999999999998876543 234468999999999999
Q ss_pred HHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 001976 377 EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 377 edLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rr 441 (987)
|.|+++|++||.|++|+.++ .||||.|.+.++|.+|++.+||++|.|..|.|.+|+|..+++
T Consensus 274 E~lk~~F~~~G~veRVkk~r---DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 274 ETLKKLFNEFGKVERVKKPR---DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHHHhccceEEeeccc---ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999998774 499999999999999999999999999999999999987655
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.4e-26 Score=271.82 Aligned_cols=267 Identities=16% Similarity=0.189 Sum_probs=186.7
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhh
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILp--dedDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
..|||+||+. ++.+.|.+. |... +....++...+ ...++..+..+|||||+|. +.|+|+
T Consensus 176 r~lyVgnLp~~~t~~~l~~~--------------F~~~--~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~-~~e~A~- 237 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDF--------------FNDL--MIATGYHKAEDGKHVSSVNINKEKNFAFLEFR-TVEEAT- 237 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHHH--HHhcCCCCCCCCCceEEEEECCCCCEEEEEeC-CHHHHh-
Confidence 4599999998 888788877 6321 11111111111 1112234557899999955 666666
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCC--C-----CCCCCCCCCc--CCCCCCCCCCCcEEEEccCCCCCChHHHHH
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGG--V-----SNQGVSAGSV--VGEHPYGEHPSRTLFVRNINSNVEDSELKA 296 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~--~-----~n~~~~~~~~--~ge~~~~e~~srtLfVgNLP~~vTEedLre 296 (987)
.|+ .++|+.|. +..+.+.+........ . .+........ ...........++|||+|||..+|+++|++
T Consensus 238 -~Al-~l~g~~~~-g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 238 -FAM-ALDSIIYS-NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred -hhh-cCCCeEee-CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 577 59999998 4545444322111000 0 0000000000 000011234568999999999999999999
Q ss_pred hhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc--------------
Q 001976 297 LFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE-------------- 357 (987)
Q Consensus 297 lFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~-------------- 357 (987)
+|+.||.|..+.+ ++.++|||||+|.+.++|+.|++.|+|..|.|+.|.|.++........
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLA 394 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccc
Confidence 9999999998865 577899999999999999999999999999999999988754321100
Q ss_pred ----------ccccccceeeecCCCC--C--------CHHHHHHHhhccCCEEEEEEcCC--------CCcEEEEEECCH
Q 001976 358 ----------KDANQGTLVVFNLDSS--V--------STEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDI 409 (987)
Q Consensus 358 ----------~~~~~~tLfV~NLp~~--v--------TeedLrelFs~fG~I~~Vri~~~--------skG~aFVeF~d~ 409 (987)
...+..+|+|.|+... + ..++|+++|++||.|+.|+|+.. ..|++||+|.+.
T Consensus 395 ~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~ 474 (509)
T TIGR01642 395 KALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADV 474 (509)
T ss_pred ccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCH
Confidence 0124567899999532 1 23689999999999999998643 358999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 410 RAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 410 edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
++|++|+..|||..|+|+.|.|.|...
T Consensus 475 e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 475 RSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999999999765
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=3.1e-26 Score=265.79 Aligned_cols=257 Identities=19% Similarity=0.284 Sum_probs=188.3
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
..|||+||+. ++.+.|++. |....++....+ + .|..++.++|||||+|. +.++|+ +
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~--------------F~~~G~v~~v~i---~---~d~~~~~skg~afVeF~-~~e~A~--~ 146 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEF--------------FSKVGKVRDVQC---I---KDRNSRRSKGVAYVEFY-DVESVI--K 146 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHhcCCeeEEEE---e---ecCCCCCcceEEEEEEC-CHHHHH--H
Confidence 3599999998 888778777 744433322111 1 22347889999999965 666666 6
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|+. ++|..|. +..+.+..... .++...... ..........++|||+|||.++|+++|+++|++||.|..|
T Consensus 147 Al~-l~g~~~~-g~~i~v~~~~~-----~~~~~~~~~---~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v 216 (457)
T TIGR01622 147 ALA-LTGQMLL-GRPIIVQSSQA-----EKNRAAKAA---THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDV 216 (457)
T ss_pred HHH-hCCCEEC-CeeeEEeecch-----hhhhhhhcc---cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 775 7888887 43333322111 011000000 0001112237999999999999999999999999999999
Q ss_pred Ee-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC---------------------------
Q 001976 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP--------------------------- 355 (987)
Q Consensus 308 ki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~--------------------------- 355 (987)
.+ +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+......
T Consensus 217 ~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (457)
T TIGR01622 217 QLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQ 296 (457)
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHH
Confidence 76 3578999999999999999999999999999999999985321000
Q ss_pred --------C-------------------------------------------------c--ccccccceeeecCCCCCC-
Q 001976 356 --------S-------------------------------------------------E--KDANQGTLVVFNLDSSVS- 375 (987)
Q Consensus 356 --------~-------------------------------------------------~--~~~~~~tLfV~NLp~~vT- 375 (987)
. . ......+|+|.||....+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~ 376 (457)
T TIGR01622 297 LMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATE 376 (457)
T ss_pred HHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCccc
Confidence 0 0 012345788899854433
Q ss_pred ---------HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 376 ---------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 376 ---------eedLrelFs~fG~I~~Vri~-~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
.+||++.|++||.|+.|.+. +...|++||+|.+.++|.+|++.|||+.|+|+.|.|.+.....
T Consensus 377 ~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 377 EEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred ccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 37899999999999999987 5678999999999999999999999999999999999987544
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=3.2e-26 Score=257.64 Aligned_cols=163 Identities=23% Similarity=0.411 Sum_probs=146.5
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
......++|||+|||+++||++|+++|++||+|++|++ +++++|||||+|.+.++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 35557899999999999999999999999999999976 5678999999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCC
Q 001976 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 347 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG 421 (987)
.++.+.... ....+|||.|||..+++++|+++|++||+|+.|+++.+ .++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~~----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ecccccccc----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 998765332 34568999999999999999999999999999988754 468999999999999999999999
Q ss_pred CeeCC--cEEEEEeccCCc
Q 001976 422 SDVAG--KQIKLEASRPGG 438 (987)
Q Consensus 422 ~~I~G--r~LkV~~a~~k~ 438 (987)
..+.+ ++|+|.+++...
T Consensus 258 ~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CccCCCceeEEEEECCccc
Confidence 98866 799999988755
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.2e-26 Score=255.49 Aligned_cols=283 Identities=19% Similarity=0.275 Sum_probs=230.1
Q ss_pred ccccccCccCCccccccCCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 150 DIFTRKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 150 ~lFv~nL~~~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILp--dedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
.|+++ +.+++..|++. | +..|.+++ -..|. + |-|||||. |.+.++++ +
T Consensus 3 sl~vg--~~v~e~~l~~~--------------f--------~~~~~v~s~rvc~d~-t--slgy~yvn-f~~~~da~--~ 52 (369)
T KOG0123|consen 3 SLYVG--PDVTEAMLFDK--------------F--------SPAGPVLSIRVCRDA-T--SLGYAYVN-FQQPADAE--R 52 (369)
T ss_pred ceecC--CcCChHHHHHH--------------h--------cccCCceeEEEeecC-C--ccceEEEe-cCCHHHHH--H
Confidence 46666 55777788888 8 88888888 23454 4 99999999 55777778 8
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|+..+|...+.|... +.. |.. +....|||+||+++++..+|.++|+.||+|.+|
T Consensus 53 A~~~~n~~~~~~~~~----rim-------------~s~---------rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~ 106 (369)
T KOG0123|consen 53 ALDTMNFDVLKGKPI----RIM-------------WSQ---------RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSC 106 (369)
T ss_pred HHHHcCCcccCCcEE----Eee-------------hhc---------cCCceeeecCCCcccCcHHHHHHHHhhcCeeEE
Confidence 999999998884432 111 111 111229999999999999999999999999999
Q ss_pred Ee---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcc----cccccceeeecCCCCCCHHHHH
Q 001976 308 YT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEK----DANQGTLVVFNLDSSVSTEELH 380 (987)
Q Consensus 308 ki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~----~~~~~tLfV~NLp~~vTeedLr 380 (987)
++ ..-++|| ||+|++.++|++|++.+||..+.+++|.|....++.++... ......++|.|++.+++++.|.
T Consensus 107 kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~ 185 (369)
T KOG0123|consen 107 KVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELK 185 (369)
T ss_pred EEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHH
Confidence 87 2238899 99999999999999999999999999999888777665322 2334589999999999999999
Q ss_pred HHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh--ccchhhh------
Q 001976 381 QIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR--FMVQSEQ------ 448 (987)
Q Consensus 381 elFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rr--l~qq~eq------ 448 (987)
++|..||.|..+.++.+ .++|+||.|+++++|..|++.||+..+.++.+.|..++.+.++. +.++.++
T Consensus 186 ~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~ 265 (369)
T KOG0123|consen 186 DLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRS 265 (369)
T ss_pred HhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhcc
Confidence 99999999999988753 58899999999999999999999999999999999999977665 2222111
Q ss_pred -hccCCccc-cCCCCCCCcccc----ccccceEEE---ecCCCCcccccc
Q 001976 449 -EQDDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVLHS 489 (987)
Q Consensus 449 -~q~e~nly-knLp~svt~e~L----~~fG~I~S~---~~~nG~~rgf~~ 489 (987)
.+...+|| +|++..++.+.| ..||+|+++ .+++|.++||.-
T Consensus 266 ~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gf 315 (369)
T KOG0123|consen 266 VSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGF 315 (369)
T ss_pred ccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEE
Confidence 22337888 999999999999 799999998 677888888753
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.4e-25 Score=234.08 Aligned_cols=246 Identities=17% Similarity=0.280 Sum_probs=190.8
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001976 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei 226 (987)
-.||.|.=|+. .+.+++... |.|..|||....- .|-.+|.|-|||||.+- ..+|++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSL--------------F~SiGeiEScKLv------RDKitGqSLGYGFVNYv-~p~DAe-- 97 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSL--------------FGSIGEIESCKLV------RDKITGQSLGYGFVNYV-RPKDAE-- 97 (360)
T ss_pred cceeeeeecccccCHHHHHHH--------------hhcccceeeeeee------eccccccccccceeeec-ChHHHH--
Confidence 34566655654 444455544 8555555543222 44579999999999966 566667
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE
Q 001976 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (987)
Q Consensus 227 ~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 306 (987)
+||..+||..|. .+.+.|.-... ........+|||.+||+.+|..||+.+|++||.|..
T Consensus 98 ~AintlNGLrLQ-~KTIKVSyARP--------------------Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 98 KAINTLNGLRLQ-NKTIKVSYARP--------------------SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIIT 156 (360)
T ss_pred HHHhhhcceeec-cceEEEEeccC--------------------ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhh
Confidence 899999999998 54433322111 113345689999999999999999999999999876
Q ss_pred EE-----ecccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCCC------------------------
Q 001976 307 IY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNP------------------------ 355 (987)
Q Consensus 307 Vk-----itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~pk~~~------------------------ 355 (987)
-+ +++.+||.+||.|+..++|+.||+.|||..-.| .+|.|+|+......
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~ 236 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQ 236 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccch
Confidence 54 378999999999999999999999999988766 47888877433210
Q ss_pred -----------------------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---
Q 001976 356 -----------------------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--- 397 (987)
Q Consensus 356 -----------------------------------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~--- 397 (987)
+......++|||.||.++.+|.-|.++|.+||.|..|+++++
T Consensus 237 ~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt 316 (360)
T KOG0145|consen 237 AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT 316 (360)
T ss_pred hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc
Confidence 000012458999999999999999999999999999998754
Q ss_pred --CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 398 --KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 398 --skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
.||||||.+.+.++|..||..|||..+++|.|.|.|...+
T Consensus 317 nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 317 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 6899999999999999999999999999999999997654
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2e-24 Score=255.52 Aligned_cols=164 Identities=19% Similarity=0.382 Sum_probs=145.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
...++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999976 6789999999999999999999999999999999999865
Q ss_pred CCCCCCC-------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHH
Q 001976 350 IPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 350 ~pk~~~~-------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~ 417 (987)
....... ......++|||+||++++++++|+++|+.||.|++|++..+ ++|||||+|.+.++|.+||+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4322110 11223468999999999999999999999999999998653 68999999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCc
Q 001976 418 TLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 418 ~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
.||+..|+|+.|+|.++.++.
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999988654
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.1e-24 Score=227.10 Aligned_cols=161 Identities=20% Similarity=0.438 Sum_probs=148.7
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
.--|||+.|.+.++-++|++.|.+||+|.++++ ++|+|||+||.|.+.++|++||..|||+.|.+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 567999999999999999999999999999875 799999999999999999999999999999999999999988
Q ss_pred CCCCCc------------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Q 001976 352 KDNPSE------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 352 k~~~~~------------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~L 419 (987)
|..... .....++|||+||+..+++++|++.|++||.|.+||+.++ +||+||.|.+.|+|.+||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHh
Confidence 764321 1235679999999999999999999999999999999986 899999999999999999999
Q ss_pred CCCeeCCcEEEEEeccCCc
Q 001976 420 NRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 420 NG~~I~Gr~LkV~~a~~k~ 438 (987)
|+.+|+|..+++.|.+...
T Consensus 221 Nntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cCceeCceEEEEeccccCC
Confidence 9999999999999988655
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=1e-23 Score=249.22 Aligned_cols=191 Identities=21% Similarity=0.285 Sum_probs=160.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccc-cccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~-Gr~L~V~~a~ 350 (987)
..++|||+|||.+++|++|+++|++||.|.++++ +++++|||||+|.+.++|++||+.||+..+. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4589999999999999999999999999999976 5789999999999999999999999999886 7777776553
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEc------CCCCcEEEEEECCHHHHHHHHHHhCC--
Q 001976 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDT------QHKHNHKFIEFYDIRAAETALRTLNR-- 421 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~~Vri~------~~skG~aFVeF~d~edA~kAL~~LNG-- 421 (987)
..++|||+|||..+++++|+++|++++. ++++.+. ..+++||||+|.+.++|++|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 2468999999999999999999999864 4444332 23589999999999999999998864
Q ss_pred CeeCCcEEEEEeccCCchhhccchhhhhccCCccc-cCCCCCCCcccc----ccc--cceEEEecC
Q 001976 422 SDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSS--GVITSTCMD 480 (987)
Q Consensus 422 ~~I~Gr~LkV~~a~~k~~Rrl~qq~eq~q~e~nly-knLp~svt~e~L----~~f--G~I~S~~~~ 480 (987)
..+.|+.|.|.|+.++.... .+.....+.|| +||+.++++++| +.| |+|..+...
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred eEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 36789999999998865322 12223347899 999999999999 888 999998544
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=1.1e-23 Score=249.21 Aligned_cols=169 Identities=12% Similarity=0.263 Sum_probs=127.3
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhh
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDL 223 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~Eaa 223 (987)
.+..|||+||++ ++.+.|.+. | ..+|.|... ..|..+|.++|||||+ |++.+++
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~l--------------F--------~~fG~I~sV~I~~D~~TgkskGfAFVe-F~s~e~A 162 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRA--------------F--------DPFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAA 162 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHH--------------H--------HccCCEEEEEEeecCCCCCcCCeEEEE-eCcHHHH
Confidence 456899999998 888888887 8 444544431 1233488999999999 5577887
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001976 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
+ .|++.+||..+. ++.+.+++... ..... .............++|||+|||+++++++|+++|+.||+
T Consensus 163 ~--~Ai~~lnG~~i~-GR~IkV~rp~~-----~p~a~----~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~ 230 (612)
T TIGR01645 163 Q--LALEQMNGQMLG-GRNIKVGRPSN-----MPQAQ----PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 230 (612)
T ss_pred H--HHHHhcCCeEEe-cceeeeccccc-----ccccc----cccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC
Confidence 7 799999999998 55555542111 00000 000011112234689999999999999999999999999
Q ss_pred EEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 304 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 304 I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
|.++++ +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 231 I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 231 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred eeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 999976 46789999999999999999999999999999999986644
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=9.6e-24 Score=237.99 Aligned_cols=294 Identities=19% Similarity=0.293 Sum_probs=203.5
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhh
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpd--edDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
..|||.+|+. ++++.|.+. | +.+|-|--+ .-+--++.++|||||+|. -+||++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~--------------F--------S~vGPik~~~vVt~~gs~~~RGfgfVtFa-m~ED~q- 61 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEF--------------F--------SYVGPIKHAVVVTNKGSSEKRGFGFVTFA-MEEDVQ- 61 (678)
T ss_pred ceEEEecCCCccchhHHHHh--------------h--------hcccCcceeEEecCCCcccccCccceeee-hHhHHH-
Confidence 5799999988 666555544 6 333322220 011124559999999965 677777
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCC---CcCC---CCCCCCCCCcEEEEccCCCCCChHHHHHhhc
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAG---SVVG---EHPYGEHPSRTLFVRNINSNVEDSELKALFE 299 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~---~~~g---e~~~~e~~srtLfVgNLP~~vTEedLrelFs 299 (987)
.|+....+..|+ .+.+.+..........-...+.+.+ .... .......+.-.|.|+|||+.+.+.+|+.+|+
T Consensus 62 -rA~~e~~~~kf~-Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs 139 (678)
T KOG0127|consen 62 -RALAETEQSKFE-GRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS 139 (678)
T ss_pred -HHHHHhhcCccc-ceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh
Confidence 688877777776 4444433322211100000000000 0000 0011233467999999999999999999999
Q ss_pred ccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC--------------------
Q 001976 300 QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-------------------- 355 (987)
Q Consensus 300 ~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~-------------------- 355 (987)
.||.|..|.+ .++-.|||||.|.+..+|..|++.+|+..|.||+|-|.|+.++..-
T Consensus 140 ~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed 219 (678)
T KOG0127|consen 140 NFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEED 219 (678)
T ss_pred hcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhh
Confidence 9999999987 4556699999999999999999999999999999999998655210
Q ss_pred ----------------------Cc-cc-------------------------------------------ccccceeeec
Q 001976 356 ----------------------SE-KD-------------------------------------------ANQGTLVVFN 369 (987)
Q Consensus 356 ----------------------~~-~~-------------------------------------------~~~~tLfV~N 369 (987)
.+ .+ ....+|||+|
T Consensus 220 ~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRN 299 (678)
T KOG0127|consen 220 KEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRN 299 (678)
T ss_pred cccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEec
Confidence 00 00 0125899999
Q ss_pred CCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHh-----CC-CeeCCcEEEEEeccCCc
Q 001976 370 LDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTL-----NR-SDVAGKQIKLEASRPGG 438 (987)
Q Consensus 370 Lp~~vTeedLrelFs~fG~I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~L-----NG-~~I~Gr~LkV~~a~~k~ 438 (987)
||+++++++|+++|++||+|.++.++ ..++|.|||.|.+..+|++||... .| ..|.||.|+|..+-.+.
T Consensus 300 L~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 300 LPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred CCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 99999999999999999999998775 347899999999999999999976 23 57899999999999887
Q ss_pred hhhcc-chh--hhhccCCccc----------cCCCCCCCcccc
Q 001976 439 ARRFM-VQS--EQEQDDLNLC----------QIPFDDLSSGQM 468 (987)
Q Consensus 439 ~Rrl~-qq~--eq~q~e~nly----------knLp~svt~e~L 468 (987)
+..-+ +.. .+.-...||| ....+.++.+++
T Consensus 380 eA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm 422 (678)
T KOG0127|consen 380 EAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDM 422 (678)
T ss_pred HHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhH
Confidence 65533 221 1112226888 334555555555
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.4e-23 Score=228.93 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=164.7
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccc-cccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHY 348 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~-Gr~L~V~~ 348 (987)
...+.|||+.||.++.|++|.-+|++.|+|.++++ ++.+||||||.|.+.++|++|++.||+.+|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45689999999999999999999999999999975 7899999999999999999999999999985 88888887
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEcC------CCCcEEEEEECCHHHHHHHHHHhCC
Q 001976 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQ------HKHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~~Vri~~------~skG~aFVeF~d~edA~kAL~~LNG 421 (987)
+. ..+.|||+|||...++++|.+.|++.++ |..|.+.. +++|||||+|++...|..|-+.|-.
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 64 3578999999999999999999999887 56666542 4789999999999999999988743
Q ss_pred C--eeCCcEEEEEeccCCchhhccchhhhhccCCccc-cCCCCCCCcccc----ccccceEEEe
Q 001976 422 S--DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTC 478 (987)
Q Consensus 422 ~--~I~Gr~LkV~~a~~k~~Rrl~qq~eq~q~e~nly-knLp~svt~e~L----~~fG~I~S~~ 478 (987)
. .+.|..+.|.||.+..+-. .+....-+-|| +||+.++|+|.| ..||.|..|+
T Consensus 231 g~~klwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk 290 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVK 290 (506)
T ss_pred CceeecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEee
Confidence 3 6789999999999987543 22334458899 999999999999 7788888883
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=6.3e-23 Score=238.17 Aligned_cols=163 Identities=26% Similarity=0.455 Sum_probs=144.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++||. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4556799999999999999999999999999999976 57789999999999999999995 99999999999998
Q ss_pred ccCCCCCCCc--------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHH
Q 001976 348 YSIPKDNPSE--------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAET 414 (987)
Q Consensus 348 ~a~pk~~~~~--------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~k 414 (987)
++........ ......+|||+|||..+++++|+++|++||.|..|++.. .++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654332211 112357899999999999999999999999999998874 357899999999999999
Q ss_pred HHHHhCCCeeCCcEEEEEeccC
Q 001976 415 ALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 415 AL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
|++.|||..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999984
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=2.5e-22 Score=236.00 Aligned_cols=164 Identities=15% Similarity=0.283 Sum_probs=137.5
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhccc------------CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQF------------GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~f------------G~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i 339 (987)
......++|||+|||+++|+++|+++|.+| +.|..+.+ .+.+|||||+|.+.++|..|| +|+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 355667999999999999999999999975 34555555 678999999999999999999 5999999
Q ss_pred ccccccccccCCCCCCC-------------------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001976 340 RRRKLDIHYSIPKDNPS-------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (987)
Q Consensus 340 ~Gr~L~V~~a~pk~~~~-------------------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri 394 (987)
.|+.|.|.......... .......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999996432211000 00112468999999999999999999999999999887
Q ss_pred cC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 395 TQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 395 ~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
+. .++|||||+|.+.++|.+||+.|||..|.|++|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 54 36899999999999999999999999999999999998654
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.6e-22 Score=207.40 Aligned_cols=163 Identities=23% Similarity=0.413 Sum_probs=146.8
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
....++|.|.-||.++|++||+.+|...|+|++|++ ++.+.||+||.|-++++|++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 445689999999999999999999999999999964 788999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCe
Q 001976 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
+.|.... ....+|||.+||..+|..||+++|++||.|..-|+. +-++|.+||.|+...+|+.||+.|||..
T Consensus 118 ARPSs~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhh----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 9987653 456789999999999999999999999999776654 3479999999999999999999999998
Q ss_pred eCC--cEEEEEeccCCchh
Q 001976 424 VAG--KQIKLEASRPGGAR 440 (987)
Q Consensus 424 I~G--r~LkV~~a~~k~~R 440 (987)
-.| .+|.|+|+....++
T Consensus 194 P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCCeEEEecCCcccc
Confidence 766 68999999765543
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.4e-22 Score=219.33 Aligned_cols=164 Identities=21% Similarity=0.418 Sum_probs=143.8
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCc-cccc--ccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~-~i~G--r~L~V 346 (987)
...-+|||+-||..++|.||+++|++||.|.+|.+ ++.++|||||.|++.++|.+|+.+|+++ .|.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 45678999999999999999999999999999853 7889999999999999999999999885 4655 46778
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCC
Q 001976 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 347 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
+|+....++. ...++|||+-|+..++|.|++++|++||.|++|+|.++ +||||||+|.+.+.|..||++|||.
T Consensus 112 k~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 8876554432 44678999999999999999999999999999998764 7999999999999999999999998
Q ss_pred -eeCC--cEEEEEeccCCchhh
Q 001976 423 -DVAG--KQIKLEASRPGGARR 441 (987)
Q Consensus 423 -~I~G--r~LkV~~a~~k~~Rr 441 (987)
.+.| .+|.|+|+.++.+|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 4555 799999999887665
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=5.9e-22 Score=219.03 Aligned_cols=277 Identities=16% Similarity=0.264 Sum_probs=201.9
Q ss_pred ccccCCCCeeeecccCCCCCcccCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChh
Q 001976 123 GINSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDED 201 (987)
Q Consensus 123 ~~~~~~gk~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpded 201 (987)
.+..+.|..++-+.+...+.--..+.-+|||+-++. -++++|... | |++.+...-+|+-|+
T Consensus 9 ~~~~~~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~l--------------F---e~yg~V~einl~kDk- 70 (510)
T KOG0144|consen 9 PPSPCGGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLREL--------------F---EKYGNVYEINLIKDK- 70 (510)
T ss_pred CCCCCCCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHH--------------H---HHhCceeEEEeeccc-
Confidence 445666777777777766665566677788888876 444445444 5 333333333344344
Q ss_pred hhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEE
Q 001976 202 DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLF 281 (987)
Q Consensus 202 DL~sG~SkGfGFV~f~~t~Eaaeei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLf 281 (987)
.++.++||.||.|+...|+.+.+.|+.+ -+.|.|... .+..++ +..+++ .....++||
T Consensus 71 --~t~~s~gcCFv~~~trk~a~~a~~Alhn--~ktlpG~~~----pvqvk~-----------Ad~E~e---r~~~e~KLF 128 (510)
T KOG0144|consen 71 --STGQSKGCCFVKYYTRKEADEAINALHN--QKTLPGMHH----PVQVKY-----------ADGERE---RIVEERKLF 128 (510)
T ss_pred --ccCcccceEEEEeccHHHHHHHHHHhhc--ccccCCCCc----ceeecc-----------cchhhh---ccccchhhh
Confidence 5888999999999977777665555542 233332211 011100 111111 113468999
Q ss_pred EccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCc-cccc--ccccccccCCCCC
Q 001976 282 VRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLDIHYSIPKDN 354 (987)
Q Consensus 282 VgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~-~i~G--r~L~V~~a~pk~~ 354 (987)
|+-|++.+||.|++++|++||.|++|++ .+.+||||||.|.+.+.|..||+.|||. .++| .+|.|+|+.++++
T Consensus 129 vg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 129 VGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 9999999999999999999999999986 5789999999999999999999999995 4555 4788877765532
Q ss_pred CC------------------------------------------------------------------------------
Q 001976 355 PS------------------------------------------------------------------------------ 356 (987)
Q Consensus 355 ~~------------------------------------------------------------------------------ 356 (987)
+.
T Consensus 209 k~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q 288 (510)
T KOG0144|consen 209 KDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQ 288 (510)
T ss_pred chHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhccccc
Confidence 10
Q ss_pred --------------------------------------------------------------------------------
Q 001976 357 -------------------------------------------------------------------------------- 356 (987)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (987)
T Consensus 289 ~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq 368 (510)
T KOG0144|consen 289 KTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQ 368 (510)
T ss_pred CCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccc
Confidence
Q ss_pred --------------------------------------------------cccccccceeeecCCCCCCHHHHHHHhhcc
Q 001976 357 --------------------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIY 386 (987)
Q Consensus 357 --------------------------------------------------~~~~~~~tLfV~NLp~~vTeedLrelFs~f 386 (987)
.+.....+|||.+||.+.-+.+|-..|..|
T Consensus 369 ~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pf 448 (510)
T KOG0144|consen 369 QIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPF 448 (510)
T ss_pred cccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccc
Confidence 000012489999999999999999999999
Q ss_pred CCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 387 GEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 387 G~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
|.|++.++.- -++.|+||.|++..+|..||..|||..|+.++|+|...+.+..
T Consensus 449 G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 449 GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999977643 2688999999999999999999999999999999999887653
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=6.9e-21 Score=202.34 Aligned_cols=149 Identities=24% Similarity=0.397 Sum_probs=139.7
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~ 357 (987)
-+|||+|||..+++.+|+.+|++||+|.+|++ -|.||||+.++...|+.||+.|++..|+|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 46999999999999999999999999999998 67899999999999999999999999999999999887663
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
....+|+|+||.+.++.+||+..|++||.|.+|+|+ ++|+||.|+-.++|..|++.||+.+|.|++++|+.+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 346789999999999999999999999999999987 569999999999999999999999999999999998875
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 4
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.83 E-value=1.6e-20 Score=188.79 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=144.0
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.....||||+||+..++++.|.++|-+.|+|..+++ +...+|||||+|.++|+|+-|++-|+...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 345689999999999999999999999999999975 567999999999999999999999999999999999988
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEE-EE-----cCCCCcEEEEEECCHHHHHHHHHHhCCC
Q 001976 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RD-----TQHKHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~V-ri-----~~~skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
+.. .........+|||+||++.+++..|.+.|+.||.|... ++ .++++++|||.|.+.+.+.+|+..|||+
T Consensus 86 as~---~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 86 ASA---HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred ccc---ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 762 11222334799999999999999999999999998662 22 2457889999999999999999999999
Q ss_pred eeCCcEEEEEeccCCchh
Q 001976 423 DVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 423 ~I~Gr~LkV~~a~~k~~R 440 (987)
.++.++|.|.++..++.+
T Consensus 163 ~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 163 YLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hhcCCceEEEEEEecCCC
Confidence 999999999999877644
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.1e-19 Score=205.57 Aligned_cols=162 Identities=20% Similarity=0.364 Sum_probs=145.4
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
.||||++||++++.++|.++|+.+|+|..+.+ ++.+|||+||+|.-.+++++|++.+.+..|.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999998875 4568999999999999999999999999999999999988765
Q ss_pred CCCCc--------------------c--cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEE
Q 001976 353 DNPSE--------------------K--DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEF 406 (987)
Q Consensus 353 ~~~~~--------------------~--~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF 406 (987)
....+ . +.+...|.|+|||+.+.+.+|+.+|+.||.|.+|.|+.+ -.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43210 0 123578999999999999999999999999999999854 358999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 407 YDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 407 ~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
.+..+|.+|++.+|+.+|.||+|-|.||-+++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999998874
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=6.4e-19 Score=186.01 Aligned_cols=178 Identities=19% Similarity=0.303 Sum_probs=143.5
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~ 353 (987)
....|||||+||+.+|||+-|..||.+.|.|..+++- |+ .|+|.++....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCcc
Confidence 3457999999999999999999999999999988871 11 45666665443
Q ss_pred CCCccccc-ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001976 354 NPSEKDAN-QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 354 ~~~~~~~~-~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
...+.... .-.+||+.|...++.++|++.|.+||+|.++++++ ++|||+||.|.+.++|+.||..|||.+|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 33333333 33799999999999999999999999999999875 4899999999999999999999999999999
Q ss_pred EEEEEeccCCchhh-ccch-hhh-----hccCCccc-cCCCCCCCcccc----ccccceEEEecCC
Q 001976 428 QIKLEASRPGGARR-FMVQ-SEQ-----EQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCMDN 481 (987)
Q Consensus 428 ~LkV~~a~~k~~Rr-l~qq-~eq-----~q~e~nly-knLp~svt~e~L----~~fG~I~S~~~~n 481 (987)
.|+-.|+.+|..+. ..+. .++ ..+.+.+| +|++.-++++.| +.||.|..+|...
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk 198 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK 198 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec
Confidence 99999999887443 1111 222 22347888 999998888877 9999999996543
No 32
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1.8e-18 Score=195.07 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=125.8
Q ss_pred cCCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhh
Q 001976 145 SSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDL 223 (987)
Q Consensus 145 sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaa 223 (987)
-++-.+|||++|++ ++++.|++. |+...++....+ ..|..++.++|||||+| .++++|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~l--------------F~~~G~V~~v~i------~~d~~tg~srGyaFVeF-~~~e~A 162 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYAL--------------FRTIGPINTCRI------MRDYKTGYSFGYAFVDF-GSEADS 162 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHH--------------HHhcCCEEEEEE------EecCCCCccCcEEEEEE-ccHHHH
Confidence 34567899999998 888888888 844433322211 13445889999999995 577777
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001976 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
+ +|++.++|.+|. ++.+.+..... . ......++|||+|||.++|+++|+++|++||+
T Consensus 163 ~--~Ai~~LnG~~l~-gr~i~V~~a~p----------------~----~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 163 Q--RAIKNLNGITVR-NKRLKVSYARP----------------G----GESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred H--HHHHHcCCCccC-Cceeeeecccc----------------c----ccccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 7 799999999998 54443322110 0 11224578999999999999999999999999
Q ss_pred EEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCC
Q 001976 304 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPK 352 (987)
Q Consensus 304 I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~pk 352 (987)
|+.+++ +++++|||||+|.+.++|++||+.|++..+.+ ++|.|.++...
T Consensus 220 V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 220 IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 998865 56788999999999999999999999998876 67888887654
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=3.4e-18 Score=185.59 Aligned_cols=160 Identities=19% Similarity=0.403 Sum_probs=141.4
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
-++|||+.|...+.|+.|+..|..||+|++|.+ +++++|||||+|+-+|.|+.|++.|||..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 488999999999999999999999999999975 799999999999999999999999999999999999974322
Q ss_pred CCCC-------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHh
Q 001976 352 KDNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 352 k~~~-------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~L 419 (987)
-... .+.......|||..+.++++++||+.+|+.||+|+.|.+.+ ..+||+||||.+..+-..||..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 1111 11223456899999999999999999999999999999864 36899999999999999999999
Q ss_pred CCCeeCCcEEEEEeccC
Q 001976 420 NRSDVAGKQIKLEASRP 436 (987)
Q Consensus 420 NG~~I~Gr~LkV~~a~~ 436 (987)
|-..++|.-|+|..+..
T Consensus 273 NlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVT 289 (544)
T ss_pred chhhcccceEecccccC
Confidence 99999999999987654
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.72 E-value=1.1e-17 Score=190.71 Aligned_cols=222 Identities=19% Similarity=0.249 Sum_probs=156.6
Q ss_pred hccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEc
Q 001976 204 FSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVR 283 (987)
Q Consensus 204 ~sG~SkGfGFV~f~~t~Eaaeei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVg 283 (987)
.++.+||.+||.|. +.+.+- -|| .+.|..+-|-. +.|. .+-..+|...+.+.. .+...-..|.+.|||+
T Consensus 216 ~s~rskgi~Yvef~-D~~sVp--~ai-aLsGqrllg~p-v~vq-----~sEaeknr~a~~s~a-~~~k~~~~p~~rl~vg 284 (549)
T KOG0147|consen 216 NSRRSKGIAYVEFC-DEQSVP--LAI-ALSGQRLLGVP-VIVQ-----LSEAEKNRAANASPA-LQGKGFTGPMRRLYVG 284 (549)
T ss_pred cchhhcceeEEEEe-cccchh--hHh-hhcCCcccCce-eEec-----ccHHHHHHHHhcccc-ccccccccchhhhhhc
Confidence 47889999999977 444443 244 44555444222 2221 111122211111110 0101122344559999
Q ss_pred cCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC---
Q 001976 284 NINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP--- 355 (987)
Q Consensus 284 NLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~--- 355 (987)
||-.+++|++|+.+|+.||.|..|.+ ++.++||+||+|.+.++|++|++.|||.+|-|+.|+|.....+...
T Consensus 285 nLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a 364 (549)
T KOG0147|consen 285 NLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEA 364 (549)
T ss_pred ccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccc
Confidence 99999999999999999999999964 6889999999999999999999999999999999998332110000
Q ss_pred -----------------------------------------------------------------Cccc-------cccc
Q 001976 356 -----------------------------------------------------------------SEKD-------ANQG 363 (987)
Q Consensus 356 -----------------------------------------------------------------~~~~-------~~~~ 363 (987)
..+. ....
T Consensus 365 ~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~ 444 (549)
T KOG0147|consen 365 AVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQ 444 (549)
T ss_pred cccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccH
Confidence 0000 1233
Q ss_pred ceeeecC--CCCCC--------HHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 364 TLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 364 tLfV~NL--p~~vT--------eedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
++.++|+ |...| .||+.+.+.+||+|..|.+.+++-|+.||.|.+.++|..|+.+|||.+|.||.|++.|
T Consensus 445 C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~ 524 (549)
T KOG0147|consen 445 CLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKY 524 (549)
T ss_pred HHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEE
Confidence 5556665 22222 3788889999999999999999889999999999999999999999999999999998
Q ss_pred ccC
Q 001976 434 SRP 436 (987)
Q Consensus 434 a~~ 436 (987)
-..
T Consensus 525 ~~~ 527 (549)
T KOG0147|consen 525 LPL 527 (549)
T ss_pred eeh
Confidence 654
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.9e-17 Score=192.99 Aligned_cols=162 Identities=25% Similarity=0.447 Sum_probs=141.8
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEeccc--------ccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK--------HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgk--------srGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
++|||+||+.+.|.++|..+|..+|.|.++.+..+ +.|||||+|.+.++|+.|++.|+|+.|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999976221 3499999999999999999999999999999999998
Q ss_pred CCCCCCC-----cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHh
Q 001976 350 IPKDNPS-----EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 350 ~pk~~~~-----~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~L 419 (987)
..+.... ......+.|.|+|||...+..+++++|..||.|++|+++.. .+|||||+|-++++|.+|+.+|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 7222110 11122468999999999999999999999999999999764 4789999999999999999999
Q ss_pred CCCeeCCcEEEEEeccCCch
Q 001976 420 NRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 420 NG~~I~Gr~LkV~~a~~k~~ 439 (987)
..+.+.||+|.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999998764
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=2.2e-16 Score=164.52 Aligned_cols=163 Identities=26% Similarity=0.454 Sum_probs=144.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHH----hhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKA----LFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLre----lFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
...+..||||.||+..+..++|++ +|++||+|..|.. +.+.||.|||.|.+.+.|-.|++.|+|..+.|++++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345667999999999999999998 9999999999976 6889999999999999999999999999999999999
Q ss_pred cccCCCCCCCcc----------------------------------------------cccccceeeecCCCCCCHHHHH
Q 001976 347 HYSIPKDNPSEK----------------------------------------------DANQGTLVVFNLDSSVSTEELH 380 (987)
Q Consensus 347 ~~a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~~vTeedLr 380 (987)
+|+..+.....+ ..+...|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 998765321100 2234589999999999999999
Q ss_pred HHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEecc
Q 001976 381 QIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASR 435 (987)
Q Consensus 381 elFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~-Gr~LkV~~a~ 435 (987)
.+|.+|...++|+++...++.|||+|.+...|..|...+.|..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999888999999999999999999999999886 7888888765
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=7.8e-17 Score=169.65 Aligned_cols=166 Identities=21% Similarity=0.402 Sum_probs=138.7
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcc-ccc--ccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRR--RKLDIHY 348 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~-i~G--r~L~V~~ 348 (987)
..|+|||+-|.+.-.|||++.+|..||.|.+|.+ .+.+||+|||.|.+..+|+.||..|+|.. +-| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5799999999999999999999999999999976 67899999999999999999999999943 322 2344433
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 001976 349 SIPKDNP------------------------------------------------------------------------- 355 (987)
Q Consensus 349 a~pk~~~------------------------------------------------------------------------- 355 (987)
+...+++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 3221110
Q ss_pred --------------------------------------------------------------------------------
Q 001976 356 -------------------------------------------------------------------------------- 355 (987)
Q Consensus 356 -------------------------------------------------------------------------------- 355 (987)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCH
Q 001976 356 ---------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDI 409 (987)
Q Consensus 356 ---------------------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~ 409 (987)
.......++|||..||.+..+.||.+.|-.||.|.+.++.- .+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00011357999999999999999999999999999987753 4789999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 001976 410 RAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 410 edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rr 441 (987)
.+|+.||.+|||..|+-|+|+|...+||++.|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999988543
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2e-16 Score=172.03 Aligned_cols=253 Identities=14% Similarity=0.282 Sum_probs=183.4
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhh
Q 001976 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILp--dedDL~sG~SkGfGFV~f~~t~Eaae 224 (987)
+..|+|+-+.. +-++.+... | ..||-|-+ .-=|-.++..|||+||+ ++-.|++.
T Consensus 113 McRvYVGSIsfEl~EDtiR~A--------------F--------~PFGPIKSInMSWDp~T~kHKgFAFVE-YEvPEaAq 169 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRA--------------F--------DPFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAAQ 169 (544)
T ss_pred hHheeeeeeEEEechHHHHhh--------------c--------cCCCCcceeecccccccccccceEEEE-EeCcHHHH
Confidence 44577777765 555455544 5 44555544 12345689999999999 55777777
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001976 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 ei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
-|++.|||..|. ++.+.||+-.- ++- . -.+-.+...+.+...+|||..+.++.+|+||+..|+.||+|
T Consensus 170 --LAlEqMNg~mlG-GRNiKVgrPsN-----mpQ---A-QpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I 237 (544)
T KOG0124|consen 170 --LALEQMNGQMLG-GRNIKVGRPSN-----MPQ---A-QPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI 237 (544)
T ss_pred --HHHHHhcccccc-CccccccCCCC-----Ccc---c-chHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcce
Confidence 799999999886 77666654110 000 0 00000111244567899999999999999999999999999
Q ss_pred EEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC------------------------
Q 001976 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP------------------------ 355 (987)
Q Consensus 305 ~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~------------------------ 355 (987)
..|++ .+.++||+||+|.+..+...|+..||-..+.|.-|+|..+......
T Consensus 238 ~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAK 317 (544)
T KOG0124|consen 238 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAK 317 (544)
T ss_pred eeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHH
Confidence 99986 4679999999999999999999999999999988888332110000
Q ss_pred --------------------------------------------------------------------------------
Q 001976 356 -------------------------------------------------------------------------------- 355 (987)
Q Consensus 356 -------------------------------------------------------------------------------- 355 (987)
T Consensus 318 i~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~ 397 (544)
T KOG0124|consen 318 IMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGL 397 (544)
T ss_pred HHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhh
Confidence
Q ss_pred ----Cc--------------------------------------ccccccceeeecC--CCCCC---HHHHHHHhhccCC
Q 001976 356 ----SE--------------------------------------KDANQGTLVVFNL--DSSVS---TEELHQIFGIYGE 388 (987)
Q Consensus 356 ----~~--------------------------------------~~~~~~tLfV~NL--p~~vT---eedLrelFs~fG~ 388 (987)
.+ +....+.|.++|. |.+++ +.+|++.|++||.
T Consensus 398 L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~ 477 (544)
T KOG0124|consen 398 LEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGA 477 (544)
T ss_pred cchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccc
Confidence 00 0012356778887 56666 4689999999999
Q ss_pred EEEEEEcCCCCc---------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 389 IREIRDTQHKHN---------HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 389 I~~Vri~~~skG---------~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
|.+|.|.....+ .-||+|....++.+|+++|+|+.|+|+++..+...
T Consensus 478 V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 478 VNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred eeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhh
Confidence 999887654322 37999999999999999999999999999876543
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=2.4e-15 Score=175.67 Aligned_cols=208 Identities=19% Similarity=0.325 Sum_probs=162.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC-
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP- 351 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p- 351 (987)
.++..+.|+|+|||..+..++|..+|..||+|..+.+. ..---|+|.|.+..+|.+|++.|....+...++++.|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45566899999999999999999999999999999664 3333599999999999999999999999988888866421
Q ss_pred ------CCC-------------C------------Cccc-------------ccc-cceeeecCCCCCCHHHHHHHhhcc
Q 001976 352 ------KDN-------------P------------SEKD-------------ANQ-GTLVVFNLDSSVSTEELHQIFGIY 386 (987)
Q Consensus 352 ------k~~-------------~------------~~~~-------------~~~-~tLfV~NLp~~vTeedLrelFs~f 386 (987)
+.. . ...+ ... ++|||+||+.+++.++|..+|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 100 0 0000 112 249999999999999999999999
Q ss_pred CCEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhhccchhhhhccCCccc-c
Q 001976 387 GEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-Q 457 (987)
Q Consensus 387 G~I~~Vri~~~--------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rrl~qq~eq~q~e~nly-k 457 (987)
|.|.++.|... +.|||||+|.+.++|+.|++.|+|+.|.|+.|.|+++..+..-..-++......-+.|. +
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVR 619 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeee
Confidence 99999877532 34999999999999999999999999999999999998333222111111111134555 9
Q ss_pred CCCCCCCcccc----ccccceEEEecCC
Q 001976 458 IPFDDLSSGQM----VSSGVITSTCMDN 481 (987)
Q Consensus 458 nLp~svt~e~L----~~fG~I~S~~~~n 481 (987)
|+|...+...+ ..||+|.+++.+.
T Consensus 620 NipFeAt~rEVr~LF~aFGqlksvRlPK 647 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQLKSVRLPK 647 (725)
T ss_pred ccchHHHHHHHHHHHhcccceeeeccch
Confidence 99999987766 9999999996665
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.60 E-value=1.7e-15 Score=167.68 Aligned_cols=163 Identities=15% Similarity=0.342 Sum_probs=143.9
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
..++|||++|+++++++.|++.|.+||+|..+.+ +++++||+||+|++.+...+++. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6789999999999999999999999999999865 68899999999999999999984 56678999999999998
Q ss_pred CCCCCCcccc--cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCe
Q 001976 351 PKDNPSEKDA--NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 351 pk~~~~~~~~--~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
+.....+... ...+|||+.||.+++++++++.|.+||.|..+.++- +.++|+||.|++.+++.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8776543332 356899999999999999999999999998876653 468999999999999999988 78889
Q ss_pred eCCcEEEEEeccCCchh
Q 001976 424 VAGKQIKLEASRPGGAR 440 (987)
Q Consensus 424 I~Gr~LkV~~a~~k~~R 440 (987)
|+|+.+.|..|.|++..
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999998743
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=5.5e-15 Score=149.14 Aligned_cols=149 Identities=19% Similarity=0.296 Sum_probs=127.4
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEeccc--ccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK--HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgk--srGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
..+++|||+|||.++-+.||+++|-+||.|..|.+... .-.||||+|++..+|+.||..-+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 35689999999999999999999999999999987433 3469999999999999999999999999999999987543
Q ss_pred CCC----------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHH
Q 001976 353 DNP----------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIR 410 (987)
Q Consensus 353 ~~~----------------------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~e 410 (987)
... .........+.|.+||++-+++||+++..+.|.|....+.++ +++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehh
Confidence 211 111223458999999999999999999999999999888764 69999999999
Q ss_pred HHHHHHHHhCCCeeC
Q 001976 411 AAETALRTLNRSDVA 425 (987)
Q Consensus 411 dA~kAL~~LNG~~I~ 425 (987)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999988876553
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.58 E-value=1.1e-15 Score=174.72 Aligned_cols=166 Identities=23% Similarity=0.365 Sum_probs=142.8
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
..+++..++||+--|+..+++-+|.++|+.+|+|..|.+ ++.++|.|||+|.|.+....|| .|.|+.+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 346677899999999999999999999999999999965 6779999999999999999999 6999999999999
Q ss_pred ccccCCCCCCCcc----------cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHH
Q 001976 346 IHYSIPKDNPSEK----------DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIR 410 (987)
Q Consensus 346 V~~a~pk~~~~~~----------~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~e 410 (987)
|+......+.... ..+-..|||+||..++++++|+.+|+.||.|..|.++.+ .+|||||+|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 9876543332110 011123999999999999999999999999999987654 6899999999999
Q ss_pred HHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 411 AAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 411 dA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
+|.+|++.|||.+|.|+.|+|.....+
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999876543
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.57 E-value=1.4e-12 Score=145.15 Aligned_cols=160 Identities=21% Similarity=0.367 Sum_probs=132.2
Q ss_pred CCcEEEEccCCCCCChHHHHHhhc-ccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs-~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
..|.+||.|||+++..++|+++|. +.|+|..|.+ .+|.||+|.|+|+++|.+++|++.||...+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 357799999999999999999997 7899999865 79999999999999999999999999999999999984321
Q ss_pred CCC-----------------------------------------------CCCc--------------------------
Q 001976 351 PKD-----------------------------------------------NPSE-------------------------- 357 (987)
Q Consensus 351 pk~-----------------------------------------------~~~~-------------------------- 357 (987)
..+ ++..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 100 0000
Q ss_pred --------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE----cCCCCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 358 --------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 358 --------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri----~~~skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
...-...+||.||+..+..+.|++.|.-.|+|..|.+ ...++|++.|+|..+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0011247899999999999999999999999988754 3457899999999999999999999988777
Q ss_pred CcEEEEEecc
Q 001976 426 GKQIKLEASR 435 (987)
Q Consensus 426 Gr~LkV~~a~ 435 (987)
.++..+...+
T Consensus 283 ~~~~~~Rl~~ 292 (608)
T KOG4212|consen 283 DRRMTVRLDR 292 (608)
T ss_pred cccceeeccc
Confidence 7777776643
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=3.4e-15 Score=159.43 Aligned_cols=149 Identities=18% Similarity=0.324 Sum_probs=122.5
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
.+|||+||+. .+..+|... | +.+|.+|-++ +-|.||||+. ++.++++ +
T Consensus 3 ~KLFIGNLp~~~~~~elr~l--------------F--------e~ygkVlECD------IvKNYgFVHi-Edktaae--d 51 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSL--------------F--------EQYGKVLECD------IVKNYGFVHI-EDKTAAE--D 51 (346)
T ss_pred cchhccCCCcccchHHHHHH--------------H--------HhhCceEeee------eecccceEEe-ecccccH--H
Confidence 5799999986 676666655 7 7788777643 2678999995 4666666 8
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
+|.+++|..|+ +..+.|...++ +...+++|+|+||.+.++.+||++.|++||+|.++
T Consensus 52 airNLhgYtLh-g~nInVeaSks----------------------Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviec 108 (346)
T KOG0109|consen 52 AIRNLHGYTLH-GVNINVEASKS----------------------KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIEC 108 (346)
T ss_pred HHhhcccceec-ceEEEEEeccc----------------------cCCCccccccCCCCccccCHHHhhhhcccCCceee
Confidence 99999999998 44444433222 23567999999999999999999999999999999
Q ss_pred EecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 308 YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 308 kitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
++ -++|+||.|+-.++|..|++.|++.++.|+++.|+.+...-.
T Consensus 109 di---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 109 DI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred ee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 98 688999999999999999999999999999999998865543
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.8e-14 Score=148.16 Aligned_cols=149 Identities=23% Similarity=0.403 Sum_probs=130.1
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC--
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-- 355 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~-- 355 (987)
..|||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|..|+..++++.|.|..+.|.++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46999999999999999999999999999988 5689999999999999999999999999999888888742110
Q ss_pred --------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC
Q 001976 356 --------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 356 --------------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG 421 (987)
.........|.|.|+...+.+.+|.+.|.++|.+.+... ..+++||+|.+.++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 011234457899999999999999999999999965544 578999999999999999999999
Q ss_pred CeeCCcEEEEE
Q 001976 422 SDVAGKQIKLE 432 (987)
Q Consensus 422 ~~I~Gr~LkV~ 432 (987)
..+.|+.|.+.
T Consensus 156 ~~~~~~~l~~~ 166 (216)
T KOG0106|consen 156 KKLNGRRISVE 166 (216)
T ss_pred hhhcCceeeec
Confidence 99999999993
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=2.6e-12 Score=143.12 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=67.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
.++|+|+|||.++|++.|++-|..||.|+++.|+.+.+..+.|.|.++++|++|+..|||..+.|+.|+|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3689999999999999999999999999999987666666799999999999999999999999999999874
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.40 E-value=3.9e-12 Score=139.03 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=135.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE--------Ee----cccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI--------YT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV--------ki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~ 340 (987)
....++.|||.|||.++|.+++.++|++||-|..- ++ .|+.+|=|.+.|-..+++..|++.|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34566889999999999999999999999987642 22 5788999999999999999999999999999
Q ss_pred cccccccccCCCC----------C------------------------CCcccccccceeeecCCC----CCC-------
Q 001976 341 RRKLDIHYSIPKD----------N------------------------PSEKDANQGTLVVFNLDS----SVS------- 375 (987)
Q Consensus 341 Gr~L~V~~a~pk~----------~------------------------~~~~~~~~~tLfV~NLp~----~vT------- 375 (987)
|++|+|+.+.-.. . ...+....++|.++|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999997653110 0 011123456899999821 222
Q ss_pred HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 376 TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 376 eedLrelFs~fG~I~~Vri~-~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
+++|++.+.+||.|..|.+. .+..|.+-|.|.+.++|..||+.|+|+.|.||.|..+...-+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 57888899999999998876 4578999999999999999999999999999999998876544
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.39 E-value=1.3e-12 Score=130.69 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=74.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.....++|||+|||+++||++|+++|++||+|.++++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999876 56789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 001976 348 YSIPKDN 354 (987)
Q Consensus 348 ~a~pk~~ 354 (987)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9876544
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.38 E-value=1.7e-12 Score=129.84 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=72.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
..++|||+|||..+++++|+++|++||.|++|+++. .+++||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 456899999999999999999999999999998864 358999999999999999999999999999999999998
Q ss_pred CCc
Q 001976 436 PGG 438 (987)
Q Consensus 436 ~k~ 438 (987)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=6.9e-13 Score=134.22 Aligned_cols=164 Identities=18% Similarity=0.272 Sum_probs=123.9
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhh
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDL 223 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILp--dedDL~sG~SkGfGFV~f~~t~Eaa 223 (987)
+-..||++||+. ++..-||+. | -..|-++. --.|..+...+||||++| .++|++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL--------------~--------iqagpVv~i~iPkDrv~~~~qGygF~Ef-~~eeda 64 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYEL--------------F--------IQAGPVVNLHIPKDRVTQKHQGYGFAEF-RTEEDA 64 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHH--------------H--------HhcCceeeeecchhhhcccccceeEEEE-echhhh
Confidence 345699999986 776677766 6 33443333 112333556899999995 578887
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCc
Q 001976 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (987)
Q Consensus 224 eei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 303 (987)
+ .||.-+|+..|. ++.+.|.+.- .....-....+|||+||.+.++|..|.+.|+.||.
T Consensus 65 d--YAikiln~VkLY-grpIrv~kas-------------------~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 65 D--YAIKILNMVKLY-GRPIRVNKAS-------------------AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred H--HHHHHHHHHHhc-CceeEEEecc-------------------cccccccccccccccccCcchhHHHHHHHHHhccc
Confidence 8 899999988888 4444332211 11112233489999999999999999999999998
Q ss_pred EEEE-E-----ecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001976 304 IRTI-Y-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (987)
Q Consensus 304 I~sV-k-----itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~ 355 (987)
|... + .++..+|||||.|.+.+.+.+|++.++|+.+..+++.|.|+..+...
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 8763 1 36889999999999999999999999999999999999999766544
No 51
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.31 E-value=8.9e-12 Score=129.39 Aligned_cols=149 Identities=23% Similarity=0.326 Sum_probs=116.2
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEE--Eecccc----cceEEEEeCCHHHHHHHHHHccCcccc---cccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTI--YTACKH----RGFVMISYYDIRAARNAMKALQNKPLR---RRKLDI 346 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sV--kitgks----rGfAFV~F~d~e~A~kAl~~LnG~~i~---Gr~L~V 346 (987)
.-|||||.+||.++...||..+|..|--.+.. +.+.+. +-+|||+|.+..+|..|+.+|||..|+ +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46999999999999999999999999766654 444443 379999999999999999999998875 455666
Q ss_pred cccCCCCCC---------------------------------------------------Cccc----------------
Q 001976 347 HYSIPKDNP---------------------------------------------------SEKD---------------- 359 (987)
Q Consensus 347 ~~a~pk~~~---------------------------------------------------~~~~---------------- 359 (987)
++++..... .+.+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 554321100 0000
Q ss_pred ---------------ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHhCCCe
Q 001976 360 ---------------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 360 ---------------~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
....||||.||.+.+++++|+++|+.|-....+++-.+ ....|||+|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 01238999999999999999999999987777766433 34479999999999999999999987
Q ss_pred e
Q 001976 424 V 424 (987)
Q Consensus 424 I 424 (987)
|
T Consensus 273 ~ 273 (284)
T KOG1457|consen 273 L 273 (284)
T ss_pred e
Confidence 6
No 52
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2.2e-11 Score=141.30 Aligned_cols=165 Identities=17% Similarity=0.328 Sum_probs=132.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.......+||++||..+++++++++...||++..... ++-++||||.+|.+......|+..|||+.+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3445689999999999999999999999999987753 57899999999999999999999999999999999998
Q ss_pred ccCCCCCCCc--------------------ccccccceeeecC--CCCCC--------HHHHHHHhhccCCEEEEEEcCC
Q 001976 348 YSIPKDNPSE--------------------KDANQGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQH 397 (987)
Q Consensus 348 ~a~pk~~~~~--------------------~~~~~~tLfV~NL--p~~vT--------eedLrelFs~fG~I~~Vri~~~ 397 (987)
.+........ .......|++.|+ |.++. -|+++..|.+||.|..|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 8765432211 1123345555554 12221 1567778889999999988653
Q ss_pred --------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 398 --------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 398 --------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
..|..||+|.+.+++++|.++|+|.+|.|++|...|....
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3567899999999999999999999999999999997653
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.28 E-value=6e-11 Score=131.89 Aligned_cols=163 Identities=25% Similarity=0.412 Sum_probs=132.8
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccc-eEEEEeCCHHHHHHHHHHccCccccc--ccccccccC--
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI-- 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrG-fAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~-- 350 (987)
+--.++|.|+-.-|+-|-|..+|++||.|..|..-.|..+ .|.|.|.+.+.|+.|...|+|+.|.. +.|+|.|+.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 3456788999999999999999999999999876555555 59999999999999999999987753 455554432
Q ss_pred --------CCCCC--------C---------------------------------------ccccc--ccceeeecCC-C
Q 001976 351 --------PKDNP--------S---------------------------------------EKDAN--QGTLVVFNLD-S 372 (987)
Q Consensus 351 --------pk~~~--------~---------------------------------------~~~~~--~~tLfV~NLp-~ 372 (987)
.|... . .-... ...|.|.||. .
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 11110 0 00001 3567888885 6
Q ss_pred CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 373 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 373 ~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
.+|.+.|..+|+.||+|.+|++..+++..|.|+|.|...|+-|++.|+|..+.||+|+|.+++-..
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 789999999999999999999998888999999999999999999999999999999999998543
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=8.3e-12 Score=106.94 Aligned_cols=66 Identities=35% Similarity=0.563 Sum_probs=62.0
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001976 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 365 LfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
|||+|||.++++++|+++|++||.|..+.+..+ .+++|||+|.+.++|++|++.|||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988753 578999999999999999999999999999985
No 55
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.27 E-value=3.7e-12 Score=141.33 Aligned_cols=203 Identities=16% Similarity=0.251 Sum_probs=130.4
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
...+||+++|.| ++.+.|.+. |..+.|+...++ ..|..+++++|||||+|.+. +.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~y--------------f~~~Gev~d~~v------m~d~~t~rsrgFgfv~f~~~-~~v~- 62 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREY--------------FSQFGEVTDCVV------MRDPSTGRSRGFGFVTFATP-EGVD- 62 (311)
T ss_pred CCcceeecCcCccccHHHHHHH--------------hcccCceeeEEE------eccCCCCCcccccceecCCC-cchh-
Confidence 456899999999 888888888 744433332222 35666899999999997633 3322
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEE
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 305 (987)
++...--..|+ .+.+.+.+..+ +.............+|||+.||.++++++|++.|++||.|.
T Consensus 63 --~vl~~~~h~~d-gr~ve~k~av~--------------r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~ 125 (311)
T KOG4205|consen 63 --AVLNARTHKLD-GRSVEPKRAVS--------------REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA 125 (311)
T ss_pred --eeecccccccC-CccccceeccC--------------cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeE
Confidence 22211112233 11111111111 11111112223578999999999999999999999999888
Q ss_pred EEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccc-cceeeecCCCCCCHHHH
Q 001976 306 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQ-GTLVVFNLDSSVSTEEL 379 (987)
Q Consensus 306 sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~~~~-~tLfV~NLp~~vTeedL 379 (987)
.+.+ +.+.+||+||.|.+.+++++++. .....|.++.+.|..+.|++......... ......|+....+.-.|
T Consensus 126 ~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l 204 (311)
T KOG4205|consen 126 DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFL 204 (311)
T ss_pred eeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccccccccccccccccccccccccc
Confidence 7743 67799999999999999999994 78889999999999999987653322111 11222244444444444
Q ss_pred HHHhhccCCE
Q 001976 380 HQIFGIYGEI 389 (987)
Q Consensus 380 relFs~fG~I 389 (987)
...|.-|+.+
T Consensus 205 ~~~~~g~~~~ 214 (311)
T KOG4205|consen 205 KKYFKGYGPV 214 (311)
T ss_pred chhccccCcc
Confidence 5555555443
No 56
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.26 E-value=4.5e-11 Score=132.88 Aligned_cols=160 Identities=23% Similarity=0.303 Sum_probs=136.5
Q ss_pred CcEEEEccCCCC-CChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC-
Q 001976 277 SRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN- 354 (987)
Q Consensus 277 srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~- 354 (987)
+..|.|.||..+ ||.+.|..+|..||+|..|++-.+.+.-|.|.|.|...|+-|++.|+|..+.|++|+|.+++...-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 578999999765 999999999999999999998767778999999999999999999999999999999988753211
Q ss_pred -----CCc-------------------------ccccccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcCCCCcEEE
Q 001976 355 -----PSE-------------------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKF 403 (987)
Q Consensus 355 -----~~~-------------------------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I-~~Vri~~~skG~aF 403 (987)
... -..+..+|.+.|+|.++++|+|++.|..-|.. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 000 01234589999999999999999999998765 55666776788999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCC-cEEEEEeccC
Q 001976 404 IEFYDIRAAETALRTLNRSDVAG-KQIKLEASRP 436 (987)
Q Consensus 404 VeF~d~edA~kAL~~LNG~~I~G-r~LkV~~a~~ 436 (987)
+.+.+.|+|..|+-.++...+++ ..|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999975 5999999875
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.26 E-value=1e-11 Score=106.44 Aligned_cols=66 Identities=30% Similarity=0.616 Sum_probs=61.6
Q ss_pred EEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 280 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 280 LfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
|||+|||.++|+++|+++|++||.|..+++ .+..++||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999998876 356889999999999999999999999999999874
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=4.1e-11 Score=125.00 Aligned_cols=120 Identities=28% Similarity=0.451 Sum_probs=103.0
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC-
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI- 350 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~- 350 (987)
.++|||+|||.++|+++|+++|.+||.|..+.+ +++.+|||||+|.+.++|..|++.+++..|.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 799999999999999999999999999988764 57899999999999999999999999999999999999954
Q ss_pred ---CCCCCC----------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC
Q 001976 351 ---PKDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ 396 (987)
Q Consensus 351 ---pk~~~~----------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~ 396 (987)
++.... ........+++.+++..++..++...|..+|.+..+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 222221 0112345899999999999999999999999997776654
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3e-11 Score=121.86 Aligned_cols=77 Identities=32% Similarity=0.496 Sum_probs=73.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
.+.|||+||+..+++.||..+|..||.|..|.|..+..|||||||+++.+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 56899999999999999999999999999999988889999999999999999999999999999999999987543
No 60
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.18 E-value=1.1e-10 Score=132.65 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=126.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEE---ecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY---TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk---itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
..--|-+++||+++|++||.++|+.++ |+.+. .+++..|=|||+|.+.+++++|++ .+...+..|-|.|--+.++
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 345678899999999999999999987 45444 468899999999999999999996 7777788888888655444
Q ss_pred CCC-------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEE-EEEcC----CCCcEEEEEECCHHHHHHHHHHhC
Q 001976 353 DNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDTQ----HKHNHKFIEFYDIRAAETALRTLN 420 (987)
Q Consensus 353 ~~~-------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~-Vri~~----~skG~aFVeF~d~edA~kAL~~LN 420 (987)
+.. .....+...|.+++||..|+++||.++|+---.|.. |.++. ...+-|||+|++.+.|++|+. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 321 111135568999999999999999999997544433 33332 245679999999999999999 67
Q ss_pred CCeeCCcEEEEEeccCCchhh
Q 001976 421 RSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 421 G~~I~Gr~LkV~~a~~k~~Rr 441 (987)
...|+-+-|.|-.+...+.++
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HHhhccceEEeehhHHHHHHh
Confidence 788888888887776655444
No 61
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.2e-11 Score=121.71 Aligned_cols=78 Identities=23% Similarity=0.493 Sum_probs=73.8
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~ 353 (987)
-.++|||+||+.++++.||..+|..||+|.+|.+.....|||||+|++..+|+.|+..|+|+.|.|..|.|+.+.-..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 368999999999999999999999999999999988999999999999999999999999999999999999886543
No 62
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.11 E-value=7.1e-10 Score=122.19 Aligned_cols=168 Identities=20% Similarity=0.328 Sum_probs=135.3
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHc--cCcccccccccccc
Q 001976 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL--QNKPLRRRKLDIHY 348 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~L--nG~~i~Gr~L~V~~ 348 (987)
+....++-.|.|++|-..++|.+|.+.++.||.|..+.. ...+..|.|+|+|.+.|+.++... +...+.|+.--+.|
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 445667889999999999999999999999999998876 566778999999999999998532 33567788888888
Q ss_pred cCCCCCCC---ccccccccee--eecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCe
Q 001976 349 SIPKDNPS---EKDANQGTLV--VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 349 a~pk~~~~---~~~~~~~tLf--V~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
+..+.... +.......|. |-|--..+|-|.|+.++...|+|.+|.|+.+..=.|.|||++.+.|++|...|||..
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGAD 183 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccc
Confidence 75443221 1112233343 445557889999999999999999999998755579999999999999999999998
Q ss_pred e--CCcEEEEEeccCCch
Q 001976 424 V--AGKQIKLEASRPGGA 439 (987)
Q Consensus 424 I--~Gr~LkV~~a~~k~~ 439 (987)
| +..+|+|+||+|..-
T Consensus 184 IYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 184 IYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred ccccceeEEEEecCccee
Confidence 8 468999999999653
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.9e-10 Score=125.29 Aligned_cols=83 Identities=22% Similarity=0.403 Sum_probs=75.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.....++|+|.|||...-|-||+.+|++||+|.+|.+ ..-+|||+||+|++.++|++|-++|+|..+.||+|.|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 4445689999999999999999999999999999875 5669999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
......
T Consensus 172 TarV~n 177 (376)
T KOG0125|consen 172 TARVHN 177 (376)
T ss_pred chhhcc
Confidence 766443
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.11 E-value=2.2e-10 Score=123.67 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=69.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~--skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
.++|||+|||+.+++++|+++|+.||+|.+|++..+ .++||||+|.+.++|+.||. |||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999999765 47999999999999999996 999999999999999874
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.9e-10 Score=125.26 Aligned_cols=100 Identities=15% Similarity=0.241 Sum_probs=81.9
Q ss_pred cCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC---CCCcEEEEEECCHHH
Q 001976 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRA 411 (987)
Q Consensus 335 nG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~---~skG~aFVeF~d~ed 411 (987)
++-...|..+.++.+... ......+.|+|.|||....+-||+.+|.+||+|.+|.|+- .+||||||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~s----~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNS----SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCcC----CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 444555666555433222 1223446899999999999999999999999999998863 479999999999999
Q ss_pred HHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 412 AETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 412 A~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
|++|-++|||..|.||+|.|..+..+-
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchhh
Confidence 999999999999999999999998764
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=3.4e-10 Score=98.17 Aligned_cols=66 Identities=26% Similarity=0.538 Sum_probs=59.8
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001976 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 365 LfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
|||+|||+.+++++|+++|+.||.|..+++..+ .+++|||+|.+.++|.+|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999998765 368999999999999999999999999999985
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=5.1e-10 Score=94.28 Aligned_cols=69 Identities=30% Similarity=0.571 Sum_probs=64.1
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC---CcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~s---kG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+|+|.|||..+++++|+++|.+||.|..+++..+. +++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999887653 6899999999999999999999999999999873
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=3.8e-10 Score=105.34 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=74.6
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
....++.|||+|||.++|.++..++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|..
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4456799999999999999999999999999999998 56689999999999999999999999999999999999887
Q ss_pred CCC
Q 001976 351 PKD 353 (987)
Q Consensus 351 pk~ 353 (987)
+.+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 653
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.06 E-value=3.7e-10 Score=122.01 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=68.6
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
.++|||+|||+.+||++|+++|+.||+|.+|.+ .+..+|||||+|.+.++|+.|+. |+|..|.|+.|.|..+..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 589999999999999999999999999999987 33468999999999999999995 9999999999999887643
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.05 E-value=4.3e-10 Score=97.53 Aligned_cols=66 Identities=23% Similarity=0.558 Sum_probs=58.5
Q ss_pred EEEccCCCCCChHHHHHhhcccCcEEEEEec----ccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 280 LFVRNINSNVEDSELKALFEQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 280 LfVgNLP~~vTEedLrelFs~fG~I~sVkit----gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
|||+|||+++++++|+++|+.||.|..+++. +..+++|||+|.+.++|++|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999762 34689999999999999999999998999999874
No 71
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=9.9e-10 Score=91.90 Aligned_cols=56 Identities=27% Similarity=0.569 Sum_probs=52.2
Q ss_pred HHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 379 LHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 379 LrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
|+++|++||+|..|.+..+.+++|||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998776799999999999999999999999999999999986
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=2.6e-10 Score=110.01 Aligned_cols=78 Identities=26% Similarity=0.467 Sum_probs=71.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
....++||||+||...++|++|.++|+++|+|+.|.+ +...-|||||+|.+.++|..|++.++|..+..++|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3456899999999999999999999999999999965 56678999999999999999999999999999999998
Q ss_pred ccC
Q 001976 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 753
No 73
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=2.1e-10 Score=132.19 Aligned_cols=162 Identities=24% Similarity=0.356 Sum_probs=130.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...+.++|+|-|||..|++++|+++|+.||+|+.|+.+...+|.+||+|+|..+|++|+++|++.++.|+.|+.......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999884322111
Q ss_pred CC------------------CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHH
Q 001976 353 DN------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414 (987)
Q Consensus 353 ~~------------------~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~k 414 (987)
.. ......+...++.- |++..+..-++.+|+.+|.+.. +.++..+..-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 10 01111233455554 9999999888899999999988 8777666788999999999977
Q ss_pred HHHHhCCCeeCCcEEEEEeccCC
Q 001976 415 ALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 415 AL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
+...+ |..+.++...+.++.+.
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred cccCC-ceecCCCCceEEecCCC
Confidence 77744 67777777777776663
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.4e-10 Score=117.88 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=72.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
...+|.|.||+.++++++|+++|.+||.|.+|.+.. .++|||||.|.+.++|++||+.|||.-+..-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456899999999999999999999999999998754 479999999999999999999999999999999999999
Q ss_pred CC
Q 001976 436 PG 437 (987)
Q Consensus 436 ~k 437 (987)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.3e-09 Score=101.89 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=75.0
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~--~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
-.+.|||+|||.++|.|+..++|.+||.|..|++- +.-+|.|||-|++..+|.+|++.|+|..+.++.|.|-+.++..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 45689999999999999999999999999999984 4468999999999999999999999999999999999999876
Q ss_pred hhhcc
Q 001976 439 ARRFM 443 (987)
Q Consensus 439 ~Rrl~ 443 (987)
..+.+
T Consensus 97 ~~~~~ 101 (124)
T KOG0114|consen 97 AFKLM 101 (124)
T ss_pred HHHHH
Confidence 55533
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=98.97 E-value=1.4e-09 Score=123.02 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=76.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEECCH--HHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDI--RAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-skG~aFVeF~d~--edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
...+|||+||++.+++++|+.+|..||.|.+|.|++. .+|||||+|.+. .++.+||..|||.++.|+.|+|..|++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4468999999999999999999999999999998753 489999999987 7899999999999999999999999987
Q ss_pred chhhccchh
Q 001976 438 GARRFMVQS 446 (987)
Q Consensus 438 ~~Rrl~qq~ 446 (987)
-.-|+.+..
T Consensus 89 YLeRLkrER 97 (759)
T PLN03213 89 YLARLKREW 97 (759)
T ss_pred HHHHHHHHH
Confidence 655555433
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1e-09 Score=115.89 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=74.2
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.....+|-|.||+.+++|++|+++|.+||.|..|++ +|.+||||||+|.+.++|.+||+.|||.-+..--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 346789999999999999999999999999999975 899999999999999999999999999999999999999
Q ss_pred cCCC
Q 001976 349 SIPK 352 (987)
Q Consensus 349 a~pk 352 (987)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9886
No 78
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.97 E-value=1.4e-08 Score=112.06 Aligned_cols=167 Identities=20% Similarity=0.317 Sum_probs=137.4
Q ss_pred CCCCCCCcEEEEccCC--CCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc--cccccc
Q 001976 271 PYGEHPSRTLFVRNIN--SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDI 346 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP--~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~--Gr~L~V 346 (987)
.....+...|.+.=|. +.+|-+.|..+....|+|..|.+-.+.--.|+|+|++.+.|++|.+.|||..|. ...|+|
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 3455567777776665 458999999999999999999886776668999999999999999999998774 467888
Q ss_pred cccCCCCCCC----------------------------------------------------------------------
Q 001976 347 HYSIPKDNPS---------------------------------------------------------------------- 356 (987)
Q Consensus 347 ~~a~pk~~~~---------------------------------------------------------------------- 356 (987)
+|++|..-..
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 8887642100
Q ss_pred --------cccccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001976 357 --------EKDANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 357 --------~~~~~~~tLfV~NLp~-~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
........+.|.+|+. .+.-+.|..+|..||.|..|++++.+.|-|.||+.|..+.++|+..||+..+-|.
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 0000224688999986 4567899999999999999999998899999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001976 428 QIKLEASRPG 437 (987)
Q Consensus 428 ~LkV~~a~~k 437 (987)
+|.|.+++..
T Consensus 354 kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 KLNVCVSKQN 363 (494)
T ss_pred eEEEeecccc
Confidence 9999988753
No 79
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.96 E-value=3.6e-09 Score=89.54 Aligned_cols=70 Identities=34% Similarity=0.609 Sum_probs=65.2
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC----CcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~s----kG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
+|+|.|||..+++++|+++|+.||.|..+.+.... +++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999887653 78999999999999999999999999999999875
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=98.96 E-value=1.7e-09 Score=90.99 Aligned_cols=69 Identities=33% Similarity=0.605 Sum_probs=62.5
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEec---ccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVkit---gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
+|||+|||..+++++|+++|++||+|..+++. +..+++|||+|.+.++|++|++.+++..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999998763 3357999999999999999999999999999988763
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.2e-09 Score=105.46 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=68.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
.++||||+||...++||+|.++|+++|+|+.|.+- ....|||||+|.+.++|+.|++-++|..+..++|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 57899999999999999999999999999998542 2357899999999999999999999999999999999965
Q ss_pred C
Q 001976 436 P 436 (987)
Q Consensus 436 ~ 436 (987)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.5e-09 Score=114.17 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=66.6
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.+...++|||++|++.+..++|+++|++||+|++..+ ++++|||+||+|.|.++|.+|++. -+-.|+||+-.|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 3445689999999999999999999999999998754 799999999999999999999963 4456888888777
Q ss_pred ccC
Q 001976 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 654
No 83
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=3.8e-09 Score=88.48 Aligned_cols=66 Identities=33% Similarity=0.581 Sum_probs=60.4
Q ss_pred eecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 367 VFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 367 V~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
|.|||..+++++|+++|++||.|..+.+..+ .+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999987654 35899999999999999999999999999999873
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=3.9e-09 Score=112.65 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=68.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~--skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
..+|+|+||++.+|+++|+++|+.||+|.+|++..+ .+++|||+|+++++|+.|+. |+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 469999999999999999999999999999999865 45799999999999999996 999999999999998764
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=98.91 E-value=2e-09 Score=121.68 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=86.9
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-cccccceEEEEeCCH--HHHHHHHHHccCcccccccccccccC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDI--RAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~--e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
.....+||||||++++++++|+.+|..||.|..|.+ ..+.||||||+|.+. .++.+||..|||..+.|+.|+|..++
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 345689999999999999999999999999999976 222399999999987 78999999999999999999998886
Q ss_pred CCCC------CCc-ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc
Q 001976 351 PKDN------PSE-KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395 (987)
Q Consensus 351 pk~~------~~~-~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~ 395 (987)
+.-. ... ......++.+--. ......|+-+|-+.++|+.+-+-
T Consensus 87 P~YLeRLkrEReea~s~~~~~~kl~k~--~~e~~qLnifFPrLrKvKslPfs 136 (759)
T PLN03213 87 EHYLARLKREWEAASSTSDNTIKAPSD--SPPATHLNIFFPRLRKVKAMPLS 136 (759)
T ss_pred HHHHHHHHHHHHHhhcccccccccccc--CCccceeeEeccccccccccccC
Confidence 6411 000 0001112211111 12345677778888888766443
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=1.4e-09 Score=112.32 Aligned_cols=79 Identities=24% Similarity=0.474 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
.......+|.|-||..-++.++|+.+|++||.|-+|+| ++.++|||||.|.+..+|+.|+++|+|..|.|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34455689999999999999999999999999999986 7889999999999999999999999999999999999
Q ss_pred cccC
Q 001976 347 HYSI 350 (987)
Q Consensus 347 ~~a~ 350 (987)
+++.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8874
No 87
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=7.5e-09 Score=108.04 Aligned_cols=75 Identities=28% Similarity=0.568 Sum_probs=69.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
..+|||+|||..+++++|+++|.+||.|..|++.. ..+|||||+|.+.++|..|++.++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999998887753 4689999999999999999999999999999999999653
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=3.3e-09 Score=114.60 Aligned_cols=78 Identities=27% Similarity=0.464 Sum_probs=72.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...|-+||||+-|+.+++|++|++.|+.||+|+.|.+ +++++|||||+|++..+...|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3468899999999999999999999999999999854 89999999999999999999999999999999999998
Q ss_pred ccC
Q 001976 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.87 E-value=2.2e-09 Score=110.84 Aligned_cols=77 Identities=26% Similarity=0.495 Sum_probs=71.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
-.+|.|.||-..++.++|+.+|++||.|-+|.|.. .++|||||.|.+..+|+.|+++|+|..+.|+.|.|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 35899999999999999999999999999998864 4789999999999999999999999999999999999875
Q ss_pred Cc
Q 001976 437 GG 438 (987)
Q Consensus 437 k~ 438 (987)
.-
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.86 E-value=5e-09 Score=111.84 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
...+|||+||++.+||++|+++|+.||+|..|++ .++.++||||+|++.++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3589999999999999999999999999999987 4566789999999999999999 599999999999996643
No 91
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3.3e-09 Score=107.87 Aligned_cols=77 Identities=32% Similarity=0.473 Sum_probs=70.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~--skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
..++|||+|||.++-+.+|.++|.+||.|..|.+... ...||||+|+++.+|+.||..-+|..+.|.+|+|++++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4679999999999999999999999999999887533 4579999999999999999999999999999999998864
No 92
>smart00360 RRM RNA recognition motif.
Probab=98.85 E-value=5.8e-09 Score=87.34 Aligned_cols=66 Identities=32% Similarity=0.598 Sum_probs=59.7
Q ss_pred EccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 282 VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 282 VgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
|+|||..+++++|+++|++||.|..+.+ +++.+|+|||+|.+.++|.+|++.+++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999998876 34568999999999999999999999999999988763
No 93
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=4.7e-09 Score=102.14 Aligned_cols=83 Identities=19% Similarity=0.405 Sum_probs=74.7
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 001976 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (987)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV 431 (987)
.+....+.|||.++.+..++++|.+.|..||+|+.|.+.-+ .+|||+|+|++.++|++|+..|||..+-|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34556789999999999999999999999999999987533 5789999999999999999999999999999999
Q ss_pred EeccCCch
Q 001976 432 EASRPGGA 439 (987)
Q Consensus 432 ~~a~~k~~ 439 (987)
.|+..++.
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99986654
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.82 E-value=1.1e-08 Score=86.66 Aligned_cols=70 Identities=33% Similarity=0.656 Sum_probs=63.4
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEecc----cccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVkitg----ksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|+.|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987732 3489999999999999999999999999999988754
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.3e-09 Score=111.39 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=75.3
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
...|+|||++|..+|||.-|...|-.||+|..|.+ +.++||||||+|.-.|+|..||..||+.+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45699999999999999999999999999999976 6889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 001976 350 IPKDN 354 (987)
Q Consensus 350 ~pk~~ 354 (987)
.|..-
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 88654
No 96
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1.4e-08 Score=109.95 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=79.6
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCe
Q 001976 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~ 423 (987)
..|..++.....+-+||||.-|+.++++.+|+..|+.||.|+.|+++. .++|||||+|++..+...|.+..+|..
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 445555555556778999999999999999999999999999998764 589999999999999999999999999
Q ss_pred eCCcEEEEEeccCCch
Q 001976 424 VAGKQIKLEASRPGGA 439 (987)
Q Consensus 424 I~Gr~LkV~~a~~k~~ 439 (987)
|+|+.|.|.+-+-+..
T Consensus 168 Idgrri~VDvERgRTv 183 (335)
T KOG0113|consen 168 IDGRRILVDVERGRTV 183 (335)
T ss_pred ecCcEEEEEecccccc
Confidence 9999999999776543
No 97
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=1.3e-08 Score=85.22 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=50.8
Q ss_pred HHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 294 LKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 294 LrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999985555799999999999999999999999999999999875
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=6.1e-09 Score=108.24 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=74.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
..++|||++|...+++.-|...|-+||.|+.|.++- +.+|||||+|.-.|+|..||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 457999999999999999999999999999998864 368999999999999999999999999999999999999
Q ss_pred CCchhh
Q 001976 436 PGGARR 441 (987)
Q Consensus 436 ~k~~Rr 441 (987)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976544
No 99
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=1.7e-08 Score=106.53 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=68.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
+..-++|||++|++.+..|+|++.|++||+|++..++ +++||||||+|.|.++|.+|++.- .-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 4456789999999999999999999999999997765 458999999999999999999843 3578999999988
Q ss_pred ccCCc
Q 001976 434 SRPGG 438 (987)
Q Consensus 434 a~~k~ 438 (987)
|.-..
T Consensus 88 A~lg~ 92 (247)
T KOG0149|consen 88 ASLGG 92 (247)
T ss_pred hhhcC
Confidence 87644
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.69 E-value=2.1e-08 Score=116.15 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=72.9
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
+.|||||||++++|++|.++|+..|.|.++++ +++.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999975 7999999999999999999999999999999999999998655
Q ss_pred CC
Q 001976 353 DN 354 (987)
Q Consensus 353 ~~ 354 (987)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=2.7e-09 Score=108.35 Aligned_cols=75 Identities=20% Similarity=0.420 Sum_probs=70.1
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
..+.-|||+|||.+.||.||.-.|++||+|+.|.+ +|+++||||+.|+|.++...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45788999999999999999999999999999964 8999999999999999999999999999999999999643
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.4e-07 Score=106.80 Aligned_cols=142 Identities=19% Similarity=0.320 Sum_probs=107.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-------cccccc---eEEEEeCCHHHHHHHHHHccCcccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-------ACKHRG---FVMISYYDIRAARNAMKALQNKPLRRR 342 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-------tgksrG---fAFV~F~d~e~A~kAl~~LnG~~i~Gr 342 (987)
...-+++|||++||++++|++|...|..||.+..=.- -...+| |+|+.|+++..++.-+.+..- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 4456799999999999999999999999998764311 122456 999999999998887765432 222
Q ss_pred cccccccCCCCC-------------------CCcccccccceeeecCCCCCCHHHHHHHhh-ccCCEEEEEEcCC-----
Q 001976 343 KLDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFG-IYGEIREIRDTQH----- 397 (987)
Q Consensus 343 ~L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~~vTeedLrelFs-~fG~I~~Vri~~~----- 397 (987)
+++++.+.+... ....-.+.+||||++||.-++-++|..+|. -||.|..+-|..+
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 333322222111 112223567999999999999999999999 6999999887655
Q ss_pred CCcEEEEEECCHHHHHHHHH
Q 001976 398 KHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 398 skG~aFVeF~d~edA~kAL~ 417 (987)
.+|-|-|+|.+..+-.+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 57889999999999999998
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=3.2e-08 Score=96.47 Aligned_cols=82 Identities=17% Similarity=0.430 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
......-.|||.++-..+||++|.+.|..||+|+.+.+ ++-.+|||+|+|++.+.|++|+..+||..|.|.+|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34445678999999999999999999999999999965 6888999999999999999999999999999999999
Q ss_pred cccCCCC
Q 001976 347 HYSIPKD 353 (987)
Q Consensus 347 ~~a~pk~ 353 (987)
.|+.-+.
T Consensus 147 Dw~Fv~g 153 (170)
T KOG0130|consen 147 DWCFVKG 153 (170)
T ss_pred EEEEecC
Confidence 9986554
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.63 E-value=5.6e-08 Score=112.64 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=73.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
+.+||+|+|+++++++|..+|+..|.|.+++++- ..+||||++|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999864 46899999999999999999999999999999999999877
Q ss_pred chhh
Q 001976 438 GARR 441 (987)
Q Consensus 438 ~~Rr 441 (987)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6554
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.61 E-value=1e-07 Score=83.69 Aligned_cols=57 Identities=28% Similarity=0.477 Sum_probs=49.7
Q ss_pred HHHHHHHhh----ccCCEEEEE-E-c------CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 376 TEELHQIFG----IYGEIREIR-D-T------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 376 eedLrelFs----~fG~I~~Vr-i-~------~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||+.+.|++|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 2 2 3468999999999999999999999999999999863
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=7.8e-08 Score=112.24 Aligned_cols=164 Identities=18% Similarity=0.339 Sum_probs=134.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhccc-----------C-cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQF-----------G-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~f-----------G-~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~ 340 (987)
.....+.+||+++|..++++.+-.+|..- | .|..+++ ...+.|||++|.+.++|..|+ .+++..+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhh-cccchhhC
Confidence 34567899999999999999999998743 3 3777777 678899999999999999999 58999999
Q ss_pred cccccccccCCCCC-------------------CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----C
Q 001976 341 RRKLDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----Q 396 (987)
Q Consensus 341 Gr~L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~-----~ 396 (987)
|+++.+........ ..........++|++||..+++++++++...||.++..+++ +
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 98887743221111 01112234589999999999999999999999999887664 3
Q ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 397 HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 397 ~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
.++||||.+|.+......|+..|||..+++++|.|..+....
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 578999999999999999999999999999999999998765
No 107
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=3.4e-08 Score=119.00 Aligned_cols=159 Identities=19% Similarity=0.337 Sum_probs=139.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec----ccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit----gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
....+++||++||+..+++.+|+..|..+|.|..|.+. +....||||.|.+...+-+|..++.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 44567999999999999999999999999999999873 23345999999999999999999999999888888887
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCC--
Q 001976 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-- 426 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~G-- 426 (987)
..++ ....+.++|++|.+.+....|...|..||.|..|.+- +..-|+||.|++...|+.|+..|-|..|+|
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 7663 3346789999999999999999999999999998764 346699999999999999999999999986
Q ss_pred cEEEEEeccCCc
Q 001976 427 KQIKLEASRPGG 438 (987)
Q Consensus 427 r~LkV~~a~~k~ 438 (987)
++|.|.++.+-.
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 789999988755
No 108
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=1e-08 Score=104.19 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=70.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
....-|||+|||..+|+.||.-+|++||+|..|.+++ .++||||++|++..+..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3456899999999999999999999999999998864 47899999999999999999999999999999999876
Q ss_pred cC
Q 001976 435 RP 436 (987)
Q Consensus 435 ~~ 436 (987)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 54
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.52 E-value=1.9e-07 Score=98.40 Aligned_cols=77 Identities=27% Similarity=0.513 Sum_probs=71.1
Q ss_pred cceeeecCCCCCCHHHHHH----HhhccCCEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 363 GTLVVFNLDSSVSTEELHQ----IFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLre----lFs~fG~I~~Vri~--~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
.||||.||.+.+..++|+. +|++||+|..|... ++.+|.|||.|++.+.|..|++.|+|..+.||.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999988 99999999998875 45689999999999999999999999999999999999998
Q ss_pred Cch
Q 001976 437 GGA 439 (987)
Q Consensus 437 k~~ 439 (987)
+..
T Consensus 90 ~sd 92 (221)
T KOG4206|consen 90 DSD 92 (221)
T ss_pred ccc
Confidence 663
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.50 E-value=1.4e-07 Score=112.26 Aligned_cols=121 Identities=26% Similarity=0.373 Sum_probs=94.8
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~ 356 (987)
++||||+.|+.+++|.||.++|+.||+|.+|.+ ...++||||......+|.+|+.+|.+..+.++.|+|.|+..+.-+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 589999999999999999999999999999998 6789999999999999999999999999999999999997654321
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
.|+.|=. ...|+-||=+....++.+|+. -|.++++-.+-..|
T Consensus 500 -------------------------e~k~~wD--------~~lGVt~IP~~kLt~dl~~~~--egam~d~~t~~p~~ 541 (894)
T KOG0132|consen 500 -------------------------EYKDYWD--------VELGVTYIPWEKLTDDLEAWC--EGAMLDGTTGPPEW 541 (894)
T ss_pred -------------------------hhhhhhh--------cccCeeEeehHhcCHHHHHhh--hhceecCccCCccc
Confidence 0111100 125666666666666666654 46667666555554
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.48 E-value=2.7e-07 Score=109.93 Aligned_cols=81 Identities=28% Similarity=0.373 Sum_probs=76.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
..++||+|+.|+..+++.||..+|+.||+|.+|.+.. .+++|||++....+|.+|+..|+...+.++.|+|.|+..++.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 3568999999999999999999999999999998876 489999999999999999999999999999999999999887
Q ss_pred hh
Q 001976 440 RR 441 (987)
Q Consensus 440 Rr 441 (987)
|.
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 65
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=3.1e-07 Score=101.45 Aligned_cols=79 Identities=30% Similarity=0.435 Sum_probs=70.8
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh-CCCeeCCcEEEEEecc
Q 001976 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIKLEASR 435 (987)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~L-NG~~I~Gr~LkV~~a~ 435 (987)
..+....+|||++|-..+++.+|+++|.+||+|++|++... +++|||+|.+.++|++|.+.+ |...|+|++|+|.|++
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34566789999999999999999999999999999998875 679999999999999988765 5557899999999999
Q ss_pred C
Q 001976 436 P 436 (987)
Q Consensus 436 ~ 436 (987)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 113
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=1.4e-07 Score=99.89 Aligned_cols=161 Identities=19% Similarity=0.337 Sum_probs=109.8
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
..+|+++|.+ ...+.|... | +-+|.|.-.+ + .-|||||+ |++.-+|+ |
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~--------------f--------~~yg~~~d~~--m----k~gf~fv~-fed~rda~--D 50 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERF--------------F--------KGYGKIPDAD--M----KNGFGFVE-FEDPRDAD--D 50 (216)
T ss_pred CceeecccCCccchhHHHHH--------------H--------hhccccccce--e----ecccceec-cCchhhhh--c
Confidence 4678888876 444344333 6 5556443311 1 45699998 55666667 7
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCC-CCCCCCCC----cCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccC
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVS-NQGVSAGS----VVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG 302 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~-n~~~~~~~----~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG 302 (987)
|+...+|.+|.+.+ +.+.. +.... ..+..-+. ............+.+.|.+++..+.+.+|.+.|.++|
T Consensus 51 av~~l~~~~l~~e~-~vve~-----~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g 124 (216)
T KOG0106|consen 51 AVHDLDGKELCGER-LVVEH-----ARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG 124 (216)
T ss_pred ccchhcCceeccee-eeeec-----ccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC
Confidence 99999999998554 22222 11100 00000000 0111122345568899999999999999999999999
Q ss_pred cEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 303 DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 303 ~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.+..... ..+++||+|...++|.+|+..|++..+.++.|.+.+.
T Consensus 125 ~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 125 EVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred CCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 9954444 7889999999999999999999999999999999444
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=2.2e-07 Score=99.22 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=75.4
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
-.+.++|||-.||.+..+.||...|-.||.|.+.++ +..+|+|+||.|+++.+|+.||..|||..|.-++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 345799999999999999999999999999999875 788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001976 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
..||+.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 888764
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=5.4e-08 Score=101.52 Aligned_cols=133 Identities=22% Similarity=0.291 Sum_probs=105.1
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
...+||||.|+-..|+|+-|.|+|-+.|+|..|.+ .++.+ ||||.|+++-...-|++.+||..+.++++.|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45699999999999999999999999999999987 33444 99999999999999999999999999998886543
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCC
Q 001976 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG 421 (987)
-.... -|+..++++.+++.|+.-|.|..+++... .+.++|+.+.-.-+.-.|+....+
T Consensus 86 G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 86 GNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred CCCcc-------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 22111 15677899999999999999998887543 456777776655555555554443
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.44 E-value=3.1e-07 Score=80.69 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=50.3
Q ss_pred hHHHHHhhc----ccCcEEEEE---e---c--ccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 291 DSELKALFE----QFGDIRTIY---T---A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 291 EedLrelFs----~fG~I~sVk---i---t--gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
+++|+++|+ +||.|.++. + + +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999884 2 2 678999999999999999999999999999999876
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=5.1e-07 Score=99.73 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=73.2
Q ss_pred CCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHc-cCccccccccccc
Q 001976 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIH 347 (987)
Q Consensus 269 e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~L-nG~~i~Gr~L~V~ 347 (987)
..+.++...++|||++|...++|.+|++.|.+||+|+++.+ -..+++|||+|.+.++|+.|.++. +...|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 45667777899999999999999999999999999999988 445679999999999999998764 5567899999999
Q ss_pred ccCCC
Q 001976 348 YSIPK 352 (987)
Q Consensus 348 ~a~pk 352 (987)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.36 E-value=2.6e-06 Score=94.86 Aligned_cols=163 Identities=11% Similarity=0.163 Sum_probs=116.5
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhccc-----C--cEEEEE-ecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQF-----G--DIRTIY-TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~f-----G--~I~sVk-itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
...-.|-.++||.++++.++.++|..- | .|.-|+ .+++..|=|||.|..+++|+.|+.+ +...+..|-|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 334667889999999999999999622 2 233333 2788899999999999999999963 444444444433
Q ss_pred cccC--------------CCC-------------CCCcccccccceeeecCCCCCCHHHHHHHhhccCCE-EE--EEEc-
Q 001976 347 HYSI--------------PKD-------------NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEI-RE--IRDT- 395 (987)
Q Consensus 347 ~~a~--------------pk~-------------~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I-~~--Vri~- 395 (987)
-.+. +-- ..........+|.+++||+..+.|+|..+|..|-.- .. |.++
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 1110 000 000112235689999999999999999999998653 22 4443
Q ss_pred ---CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 396 ---QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 396 ---~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
++..|-|||+|.+.++|..|....+++..+.+-|.|-.+.-.+
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 2356789999999999999999999888888888887765544
No 119
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.32 E-value=6.7e-07 Score=99.24 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=130.9
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
....++|++++...+.+.++..++..+|.+....+ ...++++++|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999999999999997776643 4678999999999999999999754445666665555443
Q ss_pred CCCCCCCc------cccccccee-eecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHH
Q 001976 350 IPKDNPSE------KDANQGTLV-VFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 350 ~pk~~~~~------~~~~~~tLf-V~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~ 417 (987)
........ ......+++ |.||+..+++++|+..|..+|.|..+++... .++++||+|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 33221110 111233555 9999999999999999999999999998653 57899999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCch
Q 001976 418 TLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 418 ~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
. ....+.++++.+.+..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88899999999999887653
No 120
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.30 E-value=6.6e-06 Score=94.64 Aligned_cols=198 Identities=11% Similarity=0.117 Sum_probs=121.4
Q ss_pred ccCCCCeeeeecCCChhhhhhhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEcc
Q 001976 205 SGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRN 284 (987)
Q Consensus 205 sG~SkGfGFV~f~~t~Eaaeei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgN 284 (987)
+|+..|=+||+|. ++|+++ +|+++- -+.+ +.+-+-|-....+..++ . .+...+........|-+++
T Consensus 45 ~Gr~sGeA~Ve~~-seedv~--~Alkkd-R~~m-g~RYIEVf~~~~~e~d~--------~-~~~~g~~s~~~d~vVRLRG 110 (510)
T KOG4211|consen 45 NGRPSGEAYVEFT-SEEDVE--KALKKD-RESM-GHRYIEVFTAGGAEADW--------V-MRPGGPNSSANDGVVRLRG 110 (510)
T ss_pred CCCcCcceEEEee-chHHHH--HHHHhh-HHHh-CCceEEEEccCCccccc--------c-ccCCCCCCCCCCceEEecC
Confidence 5788889999966 666667 566531 1122 23322222221111111 0 0011111224568899999
Q ss_pred CCCCCChHHHHHhhcccCcEEE-EE----ecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc----------
Q 001976 285 INSNVEDSELKALFEQFGDIRT-IY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS---------- 349 (987)
Q Consensus 285 LP~~vTEedLrelFs~fG~I~s-Vk----itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a---------- 349 (987)
||..||++||.++|+-.-.|.. |. -.++..|-|||+|++.+.|++|+. -+...|..|-|.|-.+
T Consensus 111 LPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~ 189 (510)
T KOG4211|consen 111 LPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAAG 189 (510)
T ss_pred CCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhcc
Confidence 9999999999999996554443 21 146677899999999999999996 4444444443333110
Q ss_pred -------------CCCCCCC--------------------------------------------cc--------------
Q 001976 350 -------------IPKDNPS--------------------------------------------EK-------------- 358 (987)
Q Consensus 350 -------------~pk~~~~--------------------------------------------~~-------------- 358 (987)
.++..+. .+
T Consensus 190 ~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g 269 (510)
T KOG4211|consen 190 PGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQG 269 (510)
T ss_pred ccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCC
Confidence 0000000 00
Q ss_pred -------cccc-cceeeecCCCCCCHHHHHHHhhccCCE-EEEEEc--CCCCcEEEEEECCHHHHHHHHH
Q 001976 359 -------DANQ-GTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDT--QHKHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 359 -------~~~~-~tLfV~NLp~~vTeedLrelFs~fG~I-~~Vri~--~~skG~aFVeF~d~edA~kAL~ 417 (987)
.... ..++.+.||...++.++..+|+..-.+ ..|.+- .+..|-|+|+|.+.++|..|+.
T Consensus 270 ~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 270 GAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0011 356778999999999999999975544 233333 3456779999999999999987
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=1.5e-07 Score=113.15 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=120.5
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
..++||+||+..+.+.+|...|..+|.+..+++ .++.||+|||.|...++|.+|+....+..+ |
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h----------
Confidence 468999999999999999999999998887753 678899999999999999999974433333 2
Q ss_pred CCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001976 352 KDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 352 k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
...++|.|.|+..|.++|+.+|..+|.+++++++. ..+|.+||.|.+..+|.++...+++..+.-+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 23689999999999999999999999999987653 4678999999999999999999998888888
Q ss_pred EEEEEeccC
Q 001976 428 QIKLEASRP 436 (987)
Q Consensus 428 ~LkV~~a~~ 436 (987)
.+.|..+.|
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 888888776
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.2e-06 Score=96.65 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=71.7
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
.+.+.|||..|.+-+++++|.-+|+.||+|.+|.++.+ +-.||||+|++.+++++|.=.|++..|..++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45679999999999999999999999999999998765 4469999999999999999999999999999999998
Q ss_pred cCC
Q 001976 435 RPG 437 (987)
Q Consensus 435 ~~k 437 (987)
+.=
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 863
No 123
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.22 E-value=6.5e-06 Score=86.49 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=55.0
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEec-ccccceEEEEeCCHHHHHHHHHHccCccc
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA-CKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit-gksrGfAFV~F~d~e~A~kAl~~LnG~~i 339 (987)
..||||.||.++|||++|+.+|+.|-....+++. ......|||+|++.+.|..||..|+|..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4699999999999999999999999987777773 23445899999999999999999998766
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.2e-06 Score=96.71 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...|...|||..|++-+|+++|.-+|+.||.|.+|.+ ++.+..||||+|++.+++++|.-+|++..|..+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 4467899999999999999999999999999999965 67788899999999999999999999999999999999
Q ss_pred ccCCC
Q 001976 348 YSIPK 352 (987)
Q Consensus 348 ~a~pk 352 (987)
|++.-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98653
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.17 E-value=3.5e-06 Score=87.79 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhccc-CcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQF-GDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~f-G~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
........+||..+|.-+.+.++..+|.++ |.|..+++ +|.++|||||+|++.+.|+-|.+.||+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345567889999999999999999999999 67777765 799999999999999999999999999999999999
Q ss_pred ccccCCC
Q 001976 346 IHYSIPK 352 (987)
Q Consensus 346 V~~a~pk 352 (987)
|++-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987654
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.12 E-value=3.9e-07 Score=102.21 Aligned_cols=150 Identities=17% Similarity=0.336 Sum_probs=124.1
Q ss_pred cEEEEccCCCCCChHHHHHhhcccC--cEEEEEecccccceEEEEeCCHHHHHHHHHHccCc-ccccccccccccCCCCC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFG--DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK-PLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG--~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~-~i~Gr~L~V~~a~pk~~ 354 (987)
..+|++||.+.++.++|..+|...- --..+- -..||+||.+.+...|.+|++.++|+ ++.|+++.|.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 4689999999999999999997541 101111 25689999999999999999999995 68999999999988765
Q ss_pred CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-CCC-cEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-HKH-NHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 355 ~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-~sk-G~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+ .+.+.|.|+|+..-++.|..+..+||.+..|..+. ++. -..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 4 45699999999999999999999999999887643 221 234578999999999999999999999999999
Q ss_pred eccC
Q 001976 433 ASRP 436 (987)
Q Consensus 433 ~a~~ 436 (987)
|--.
T Consensus 153 YiPd 156 (584)
T KOG2193|consen 153 YIPD 156 (584)
T ss_pred cCch
Confidence 8543
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.05 E-value=3.9e-06 Score=89.66 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=118.0
Q ss_pred EEEEccCCCCCChHH-H--HHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 279 TLFVRNINSNVEDSE-L--KALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 279 tLfVgNLP~~vTEed-L--relFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
.+++.++-..+..+- | ...|+.|-.+...++ .+..++++|+.|.....-.++-.+-+++++..+++++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 345555555554444 2 456666655544432 466788999999998888888877788888877766654443
Q ss_pred CCCCC--cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCee
Q 001976 352 KDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (987)
Q Consensus 352 k~~~~--~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri-----~~~skG~aFVeF~d~edA~kAL~~LNG~~I 424 (987)
-.++. +-+...-.||.+.|..+++++.|-..|.+|-.....++ +++++||+||.|.+..++.+|+++|||+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 33332 33445568999999999999999999999865544444 345789999999999999999999999999
Q ss_pred CCcEEEEEeccCCc
Q 001976 425 AGKQIKLEASRPGG 438 (987)
Q Consensus 425 ~Gr~LkV~~a~~k~ 438 (987)
+.++|++..+.-++
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99999987665544
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=83.61 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=71.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhcc-CCEEEEEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIY-GEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~f-G~I~~Vri-----~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
....+.++|..+|.-+.+.++...|.+| |.|..+++ +++++|||||+|++.+.|.-|-+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 77788877 45689999999999999999999999999999999999
Q ss_pred eccCC
Q 001976 433 ASRPG 437 (987)
Q Consensus 433 ~a~~k 437 (987)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98776
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.00 E-value=6e-06 Score=85.71 Aligned_cols=91 Identities=19% Similarity=0.356 Sum_probs=60.2
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEec--cc--ccccceeEEEEEecCCchhhHHHHHHhcCCcccCCC
Q 001976 810 DSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLP--ID--FKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFN 885 (987)
Q Consensus 810 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~Ylp--iD--f~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 885 (987)
..++.|.||++|..+|++.+++.|+......++|-|.+ .+ --..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46889999999999999999998887666665555544 22 223445788999999999999999999999998665
Q ss_pred Cc-cEEEEEeecccCH
Q 001976 886 SE-KVASLAYARIQGK 900 (987)
Q Consensus 886 s~-Kv~~v~yA~iQG~ 900 (987)
.. -++.|.||-.|-.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 44 5899999998754
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.97 E-value=1.1e-05 Score=93.42 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=69.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
.++|+|.+|...+-..+|+.+|++||+|+-.+++.+ -++|+||++.+.++|.+||..|+.+++.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 468999999999999999999999999999888754 467999999999999999999999999999999999875
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.96 E-value=1.7e-05 Score=94.17 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=74.8
Q ss_pred CCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--------cccccceEEEEeCCHHHHHHHHHHccCccc
Q 001976 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--------ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 268 ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--------tgksrGfAFV~F~d~e~A~kAl~~LnG~~i 339 (987)
+....+...+++|||+||++.++++.|...|..||+|.++++ ....+.++||.|-+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 444556777899999999999999999999999999999986 244667999999999999999999999999
Q ss_pred ccccccccccCC
Q 001976 340 RRRKLDIHYSIP 351 (987)
Q Consensus 340 ~Gr~L~V~~a~p 351 (987)
.+.++++.|+.+
T Consensus 245 ~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 245 MEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeccccc
Confidence 999999998843
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.90 E-value=1.7e-05 Score=91.69 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=68.2
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.-.++|||.+|...+-..+|+++|++||+|+..++ +.-.++|+||++.+.++|.+||+.|+..+|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34699999999999999999999999999998875 2335789999999999999999999999999999999776
Q ss_pred C
Q 001976 350 I 350 (987)
Q Consensus 350 ~ 350 (987)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.81 E-value=3.5e-05 Score=83.45 Aligned_cols=79 Identities=27% Similarity=0.380 Sum_probs=70.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
+....+|+|.|||..|+++||+++|+.||.+..+-+ .+.+.|.|-|.|...++|.+|++.++|..+.|+.+.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344588999999999999999999999998887754 6888999999999999999999999999999999988766
Q ss_pred CCC
Q 001976 350 IPK 352 (987)
Q Consensus 350 ~pk 352 (987)
.+.
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.81 E-value=2.7e-05 Score=92.50 Aligned_cols=78 Identities=28% Similarity=0.381 Sum_probs=71.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~--------~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
+...++|||.||++.++++.|...|..||.|..|+++- ..+.++||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45677999999999999999999999999999999862 2467899999999999999999999999999999
Q ss_pred EEeccC
Q 001976 431 LEASRP 436 (987)
Q Consensus 431 V~~a~~ 436 (987)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999964
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.71 E-value=4.3e-05 Score=88.62 Aligned_cols=75 Identities=25% Similarity=0.434 Sum_probs=64.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----C-CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----H-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~----~-skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
.+|||+|||.+++.++|+++|..||.|+..+|.. . ...||||+|++.++++.||++ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4699999999999999999999999999866542 1 237999999999999999994 578899999999987764
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 4
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.67 E-value=3.9e-05 Score=88.96 Aligned_cols=75 Identities=27% Similarity=0.440 Sum_probs=62.8
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
...+|||+|||.++++++|+++|.+||+|+...+ .++..+||||+|++.++++.|+.+ +-..+.+++|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3456999999999999999999999999998755 134448999999999999999974 5778889999986544
Q ss_pred C
Q 001976 351 P 351 (987)
Q Consensus 351 p 351 (987)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.63 E-value=4.3e-05 Score=80.34 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=67.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
..+||||.|+...++++-|.++|-+.|.|..|.|... ...||||.|.++-...-|++.|||..+.+..|+|.+-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3579999999999999999999999999999988643 223999999999999999999999999999999887543
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.62 E-value=0.00015 Score=78.59 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=69.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
...+|+|.|||..++++||+++|..||.++.+-+-. .+.|.|-|.|...++|.+|++.+||..+.|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 346899999999999999999999999888876643 3568999999999999999999999999999999988776
Q ss_pred Cc
Q 001976 437 GG 438 (987)
Q Consensus 437 k~ 438 (987)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 54
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.62 E-value=0.0001 Score=82.01 Aligned_cols=74 Identities=15% Similarity=0.344 Sum_probs=66.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~--------Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~L 429 (987)
...|||.|||.++|.+++.++|++||.|.. |++..+ -+|-|.|+|...++..-|++.|++..|.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 456999999999999999999999999865 555543 46779999999999999999999999999999
Q ss_pred EEEecc
Q 001976 430 KLEASR 435 (987)
Q Consensus 430 kV~~a~ 435 (987)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999886
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.49 E-value=3.7e-05 Score=86.26 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=116.6
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEec--------ccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkit--------gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
..|-|.||.+.+|.++++.+|...|+|..+.+- ......|||.|.|...+..|.. |.++.+-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999998751 2245689999999999998874 7777766665555221
Q ss_pred -CCCC------------------CC----------C--cc---------------------cccccceeeecCCCCCCHH
Q 001976 350 -IPKD------------------NP----------S--EK---------------------DANQGTLVVFNLDSSVSTE 377 (987)
Q Consensus 350 -~pk~------------------~~----------~--~~---------------------~~~~~tLfV~NLp~~vTee 377 (987)
.+.. .+ . .. ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1000 00 0 00 0012589999999999999
Q ss_pred HHHHHhhccCCEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 378 ELHQIFGIYGEIREIRDTQ-HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 378 dLrelFs~fG~I~~Vri~~-~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
++-+.|..+|+|.+.++.. ....+|.|+|........|++ ++|.++.-....+....|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 9999999999999887653 345678899999999999998 788877644444443333
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.43 E-value=0.00015 Score=78.55 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=70.1
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
+......++|+|++..++.+++..+|+.||.|..+.+.. +.+||+||+|.+.+.++.|+. |||..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345667899999999999999999999999998766543 468999999999999999999 99999999999999
Q ss_pred eccCC
Q 001976 433 ASRPG 437 (987)
Q Consensus 433 ~a~~k 437 (987)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 97754
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.41 E-value=0.00056 Score=62.59 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=48.6
Q ss_pred cceeeecCCCCCCHH----HHHHHhhccC-CEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 363 GTLVVFNLDSSVSTE----ELHQIFGIYG-EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 363 ~tLfV~NLp~~vTee----dLrelFs~fG-~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
..|+|.|||.+.+.. .|++++..+| +|.+|. .+.|+|.|.+.+.|++|.+.|+|..+-|.+|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999998865 4667777775 566663 68899999999999999999999999999999999754
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.36 E-value=0.0017 Score=73.22 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=109.1
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhccc-----CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQF-----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~f-----G~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
..+..|-.++||+..++.+|..+|+-. |.+......++..|.|.|.|.|.|.-+-|++ -+...+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 345667778999999999999999733 3334444467788999999999999999996 5667777888877554
Q ss_pred CCCCC---------CCc---ccccccceeeecCCCCCCHHHHHHHhhcc----CCEEEEEEc----CCCCcEEEEEECCH
Q 001976 350 IPKDN---------PSE---KDANQGTLVVFNLDSSVSTEELHQIFGIY----GEIREIRDT----QHKHNHKFIEFYDI 409 (987)
Q Consensus 350 ~pk~~---------~~~---~~~~~~tLfV~NLp~~vTeedLrelFs~f----G~I~~Vri~----~~skG~aFVeF~d~ 409 (987)
...+- ... ...++-.|.+++||.++++.|+.++|.+- |..+.|-++ ++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 43321 001 11234578889999999999999999742 222333332 23467899999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEE
Q 001976 410 RAAETALRTLNRSDVAGKQIKL 431 (987)
Q Consensus 410 edA~kAL~~LNG~~I~Gr~LkV 431 (987)
++|+.||. -|...|+-|-|.+
T Consensus 217 e~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 217 EDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred HHHHHHHH-HHHHHHhHHHHHH
Confidence 99999998 4544554444433
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.35 E-value=0.00019 Score=77.11 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEE-----EecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV-----kitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
...-+||.+.|.-+++++.|...|.+|-..... +-+++++||+||.|.+..++.+|+++|+|+.++.++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 445789999999999999999999998754333 237999999999999999999999999999999999998765
Q ss_pred CC
Q 001976 350 IP 351 (987)
Q Consensus 350 ~p 351 (987)
.-
T Consensus 268 ~w 269 (290)
T KOG0226|consen 268 EW 269 (290)
T ss_pred hH
Confidence 43
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.35 E-value=0.00074 Score=63.77 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=64.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhcc--CCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVA----GKQIKL 431 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~f--G~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~----Gr~LkV 431 (987)
+||.|+|||...+.++|.+++... |...-+.++- -+.|||||.|.+++.|.+-.+.++|+... .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988763 4444444432 25799999999999999999999999774 578899
Q ss_pred EeccCCchhhcc
Q 001976 432 EASRPGGARRFM 443 (987)
Q Consensus 432 ~~a~~k~~Rrl~ 443 (987)
.||+-.+...++
T Consensus 82 ~yAriQG~~alv 93 (97)
T PF04059_consen 82 SYARIQGKDALV 93 (97)
T ss_pred ehhHhhCHHHHH
Confidence 999876643333
No 146
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0013 Score=76.73 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=95.6
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCC----hhhhhccCCCC---eeeeecCC
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD----EDDLFSGVTDD---MGHNFQAN 218 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpd----edDL~sG~SkG---fGFV~f~~ 218 (987)
...+||++.|++ ++++.+... | ..||.+.-| ....-....+| |.|..|.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~--------------F--------~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe- 314 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINAS--------------F--------GQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFE- 314 (520)
T ss_pred cccceeecCCCccccHHHHHhh--------------c--------ccccceEeecCCCccccccCCCCCcccEEEEEec-
Confidence 446799999999 888888777 7 444444431 11111233555 9998855
Q ss_pred Chhhhh-hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHh
Q 001976 219 TVDDLE-DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKAL 297 (987)
Q Consensus 219 t~Eaae-ei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrel 297 (987)
.+..+. -++|.....+..+- ++........... ..-....++....+....-.+.+|||||+||.-++.++|..+
T Consensus 315 ~E~sV~~Ll~aC~~~~~~~yf---~vss~~~k~k~VQ-IrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~i 390 (520)
T KOG0129|consen 315 DERSVQSLLSACSEGEGNYYF---KVSSPTIKDKEVQ-IRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMI 390 (520)
T ss_pred chHHHHHHHHHHhhcccceEE---EEecCccccccee-EEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHH
Confidence 443333 22333322221111 0111111110000 000111112222233445668899999999999999999999
Q ss_pred hc-ccCcEEEEEe--c---ccccceEEEEeCCHHHHHHHHHH
Q 001976 298 FE-QFGDIRTIYT--A---CKHRGFVMISYYDIRAARNAMKA 333 (987)
Q Consensus 298 Fs-~fG~I~sVki--t---gksrGfAFV~F~d~e~A~kAl~~ 333 (987)
|+ -||.|..+-+ + +-.+|-|-|+|.+..+-.+||.+
T Consensus 391 md~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 391 MEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99 9999998754 2 45789999999999999999973
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.32 E-value=0.0006 Score=62.42 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=48.8
Q ss_pred cEEEEccCCCCCChHHHH----HhhcccC-cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 278 RTLFVRNINSNVEDSELK----ALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLr----elFs~fG-~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
..|||.|||.+.+...|+ .++..|| +|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999999887655 5666786 66665 358999999999999999999999999999999998743
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.31 E-value=0.00027 Score=76.45 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
..+...+.+||+|+...+|.+++...|+.||.|..+.+ .+..+||+||+|.+.+.++.|++ |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 35567799999999999999999999999999975533 56689999999999999999997 9999999999999
Q ss_pred cccCC
Q 001976 347 HYSIP 351 (987)
Q Consensus 347 ~~a~p 351 (987)
.+..-
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 76543
No 149
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.25 E-value=0.00049 Score=81.94 Aligned_cols=163 Identities=13% Similarity=0.034 Sum_probs=117.8
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcc-cCc---EEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQ-FGD---IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~-fG~---I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
...+.+-+++.+.+..+.+++++|.. +-. |..-.+.+...|-++|.|....++++|++ -+...+..|.+.|....
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 44566777899999999999999973 222 22223344557899999999999999995 45555555655552211
Q ss_pred CC------------C-----------------CC--C----cccccccceeeecCCCCCCHHHHHHHhhccCCEEE-EEE
Q 001976 351 PK------------D-----------------NP--S----EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRD 394 (987)
Q Consensus 351 pk------------~-----------------~~--~----~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~-Vri 394 (987)
.. . .. . -.......|||+.||..+++.++-++|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 00 0 00 0 00112358999999999999999999998777766 666
Q ss_pred cCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 395 TQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 395 ~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
..- .++-|||+|..++++.+|...-+...++-+.|+|.-...+.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 532 35679999999999999999888888899999998765544
No 150
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.18 E-value=0.0011 Score=73.85 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=69.4
Q ss_pred CCCcEEE-EccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 275 HPSRTLF-VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 275 ~~srtLf-VgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.+..++| |++|+.++++++|++.|..+|.|..+++ ++..+|||||.|.....+..++.. +...+.++++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445555 9999999999999999999999999976 677899999999999999999976 88899999999998
Q ss_pred cCCCCC
Q 001976 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 876644
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=9.1e-05 Score=89.97 Aligned_cols=148 Identities=15% Similarity=0.151 Sum_probs=115.5
Q ss_pred CcEEEEccCCCCCChH-HHHHhhcccCcEEEEEecc----cc-cceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 277 SRTLFVRNINSNVEDS-ELKALFEQFGDIRTIYTAC----KH-RGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 277 srtLfVgNLP~~vTEe-dLrelFs~fG~I~sVkitg----ks-rGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
.+...+.++.+...+. ..+..|+.+|.|+.|+... .+ ..+.++.+....+++.|.. ..+.-+.++.+.|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 4566777787776665 5678999999999997633 12 2388999999999999984 78888889988888877
Q ss_pred CCCCCCccc------ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHh
Q 001976 351 PKDNPSEKD------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 351 pk~~~~~~~------~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~L 419 (987)
+........ ....++||+||+..+.+++|...|..+|.+..+++. .+-+|+|||+|...++|.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 665332211 223589999999999999999999999999887654 346899999999999999999965
Q ss_pred CCCeeC
Q 001976 420 NRSDVA 425 (987)
Q Consensus 420 NG~~I~ 425 (987)
.+..++
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 555544
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.12 E-value=0.00093 Score=63.93 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=49.1
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC-----eeCCcEEEEEeccCC
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-----DVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~-----~I~Gr~LkV~~a~~k 437 (987)
..|.|.+++..++.++|++.|++||.|..|.+.. ....|||.|.+.++|++|+..+... .|.+..++++.-.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGe 80 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGE 80 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCH
Confidence 3588999999999999999999999999998765 3557999999999999999977543 677888777765544
Q ss_pred chhh
Q 001976 438 GARR 441 (987)
Q Consensus 438 ~~Rr 441 (987)
++..
T Consensus 81 eE~~ 84 (105)
T PF08777_consen 81 EEEE 84 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.95 E-value=0.00077 Score=74.64 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=68.8
Q ss_pred CCcEEEEccCCCCCChHHHH------HhhcccCcEEEEEecccc------cce--EEEEeCCHHHHHHHHHHccCccccc
Q 001976 276 PSRTLFVRNINSNVEDSELK------ALFEQFGDIRTIYTACKH------RGF--VMISYYDIRAARNAMKALQNKPLRR 341 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLr------elFs~fG~I~sVkitgks------rGf--AFV~F~d~e~A~kAl~~LnG~~i~G 341 (987)
...-+||-+||+.+..++.. ++|.+||+|..|.+.++. .+. .||+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 45678999999998887732 799999999999763331 122 4999999999999999999999999
Q ss_pred ccccccccCCCCCCCcccccccceeeecCC
Q 001976 342 RKLDIHYSIPKDNPSEKDANQGTLVVFNLD 371 (987)
Q Consensus 342 r~L~V~~a~pk~~~~~~~~~~~tLfV~NLp 371 (987)
|.|+..|...| -++-|++|++
T Consensus 193 r~lkatYGTTK---------YCtsYLRn~~ 213 (480)
T COG5175 193 RVLKATYGTTK---------YCTSYLRNAV 213 (480)
T ss_pred ceEeeecCchH---------HHHHHHcCCC
Confidence 99999887543 3456666653
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.93 E-value=0.0027 Score=70.49 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=64.8
Q ss_pred cccceeeecCCCCCCHHH----H--HHHhhccCCEEEEEEcCCC-------CcE-EEEEECCHHHHHHHHHHhCCCeeCC
Q 001976 361 NQGTLVVFNLDSSVSTEE----L--HQIFGIYGEIREIRDTQHK-------HNH-KFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeed----L--relFs~fG~I~~Vri~~~s-------kG~-aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
...-+||-+|++.+-.|+ | .++|.+||+|+.|.+.++- ..+ .||+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999999887776 2 4799999999998875431 123 4999999999999999999999999
Q ss_pred cEEEEEeccCCc
Q 001976 427 KQIKLEASRPGG 438 (987)
Q Consensus 427 r~LkV~~a~~k~ 438 (987)
|.|+..|...|-
T Consensus 193 r~lkatYGTTKY 204 (480)
T COG5175 193 RVLKATYGTTKY 204 (480)
T ss_pred ceEeeecCchHH
Confidence 999999988765
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.62 E-value=0.0025 Score=72.81 Aligned_cols=75 Identities=29% Similarity=0.382 Sum_probs=60.3
Q ss_pred CCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------------------CCcEEEEEECCHHH
Q 001976 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------------------KHNHKFIEFYDIRA 411 (987)
Q Consensus 350 ~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~------------------skG~aFVeF~d~ed 411 (987)
.|-.+........++|.+.|||.+-..+-|.++|+.+|.|+.|+|..- .+-+|+|+|+..+.
T Consensus 219 sPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 219 SPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred CCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 333333444567899999999999999999999999999999998531 13469999999999
Q ss_pred HHHHHHHhCCCee
Q 001976 412 AETALRTLNRSDV 424 (987)
Q Consensus 412 A~kAL~~LNG~~I 424 (987)
|.+|.+.||...-
T Consensus 299 A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 299 ARKARELLNPEQN 311 (484)
T ss_pred HHHHHHhhchhhh
Confidence 9999998865543
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.47 E-value=0.0074 Score=57.42 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=54.2
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEE------------EcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc-E
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIR------------DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-Q 428 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vr------------i~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr-~ 428 (987)
...|.|.+.|+. ....|.+.|++||+|.+.. -.....++..|+|+++.+|.+||+ -||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456899999998 5567888999999998875 223456789999999999999999 899999885 5
Q ss_pred EEEEeccC
Q 001976 429 IKLEASRP 436 (987)
Q Consensus 429 LkV~~a~~ 436 (987)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777643
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.39 E-value=0.0066 Score=51.13 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=43.1
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHH
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETAL 416 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL 416 (987)
+.|.|.+.+++..+ ++...|..||+|..+.+. ....+.||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 46788899887764 455588899999999886 34779999999999999995
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.28 E-value=0.0092 Score=57.18 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK 337 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~ 337 (987)
..|+|.+++..++-++|++.|++||+|..|.. .+...-|||.|.+.++|++|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46899999999999999999999999999988 334558999999999999999876544
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.16 E-value=0.0045 Score=70.84 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=61.7
Q ss_pred CCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEeccc------------------ccceEEEEeCCHHHHHHHH
Q 001976 270 HPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------------------HRGFVMISYYDIRAARNAM 331 (987)
Q Consensus 270 ~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgk------------------srGfAFV~F~d~e~A~kAl 331 (987)
...++.++++|.+-|||.+-.-+.|.++|..+|.|..|++-.. .+-+|+|+|+..+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3446678999999999999999999999999999999986111 2458999999999999999
Q ss_pred HHccCccccccccccc
Q 001976 332 KALQNKPLRRRKLDIH 347 (987)
Q Consensus 332 ~~LnG~~i~Gr~L~V~ 347 (987)
+.|+...-...-++|.
T Consensus 304 e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 304 ELLNPEQNWRMGLKVK 319 (484)
T ss_pred Hhhchhhhhhhcchhh
Confidence 8776554444444443
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.09 E-value=0.011 Score=49.87 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=43.5
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHH
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 331 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl 331 (987)
+.|-|.+.+++..+. +...|..||+|..+..+ ....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 578899998876654 55589999999999884 56779999999999999985
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.09 E-value=0.0037 Score=67.60 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=59.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC---------------CcE--EEEEECCHHHHHHHHHHhCCCe
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---------------HNH--KFIEFYDIRAAETALRTLNRSD 423 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~s---------------kG~--aFVeF~d~edA~kAL~~LNG~~ 423 (987)
..+.||+.+||+......|+++|+.||.|-+|.+.+.. ..| |+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999999999999886421 112 8999999999999999999999
Q ss_pred eCCcE
Q 001976 424 VAGKQ 428 (987)
Q Consensus 424 I~Gr~ 428 (987)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.01 E-value=0.0057 Score=68.90 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=68.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEE--------EE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI--------RD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~V--------ri-----~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
...+|||.+||..+++++|.++|.++|.|+.= .+ +...|+-|.|.|.|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 34589999999999999999999999998652 22 223678899999999999999999999999999
Q ss_pred EEEEEeccCCch
Q 001976 428 QIKLEASRPGGA 439 (987)
Q Consensus 428 ~LkV~~a~~k~~ 439 (987)
+|+|.++..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999999987653
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.79 E-value=0.011 Score=64.03 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=74.1
Q ss_pred HHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCc
Q 001976 325 RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHN 400 (987)
Q Consensus 325 e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~----~skG 400 (987)
.-|..|-.+|++....++.++|.|+.. ..|||.||...++.|.|.+.|+.||.|....+.. ...+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 346777788999999999999999853 4799999999999999999999999997743322 2345
Q ss_pred EEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 401 HKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 401 ~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
-++|+|...-.|.+|+..++-.-|.
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCccc
Confidence 6899999999999999988544443
No 164
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=95.70 E-value=0.0054 Score=69.78 Aligned_cols=74 Identities=19% Similarity=0.406 Sum_probs=61.6
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEe-cccccccce-eEEEEEecCCchhhHHHHHHhcCCcccCCC
Q 001976 811 SRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYL-PIDFKNKCN-VGYAFINMIDPRQIIPFHQAFNGKKWEKFN 885 (987)
Q Consensus 811 ~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~Yl-piDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 885 (987)
....|.||++|+++|.+.|++.||- +...+.|-|. |-|+....+ .+.|||||..+.++..|.+.|.|+.+-.-.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 4567999999999999999999998 7788888754 466654444 677999999999999999999999876443
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.61 E-value=0.011 Score=66.65 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE-------------ecccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-------------TACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-------------itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~ 340 (987)
.....+|||-+||..+++++|.++|.++|.|..=+ .+.+.++-|.|+|.|...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45568999999999999999999999999886432 26778999999999999999999999999999
Q ss_pred cccccccccCCC
Q 001976 341 RRKLDIHYSIPK 352 (987)
Q Consensus 341 Gr~L~V~~a~pk 352 (987)
+..|+|..+..+
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999877543
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.42 E-value=0.0076 Score=65.31 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=52.1
Q ss_pred HHHHHHhh-ccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 001976 377 EELHQIFG-IYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 377 edLrelFs-~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~R 440 (987)
++|...|+ +||+|+++.+-.+ -.|-+||.|...++|++|++.||+.+|.|++|..++.--..-+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 45555666 8999999865432 3567999999999999999999999999999999997654433
No 167
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.40 E-value=0.02 Score=70.70 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=70.6
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~ 350 (987)
...+.+.++|++|++.+....|...|..||.|+.|.+ ....-||||.|.+...|+.|++.|.|..|.+ +.+.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4457899999999999999999999999999999988 4556799999999999999999999999986 668888876
Q ss_pred CCC
Q 001976 351 PKD 353 (987)
Q Consensus 351 pk~ 353 (987)
+..
T Consensus 530 ~~~ 532 (975)
T KOG0112|consen 530 PPG 532 (975)
T ss_pred CCC
Confidence 543
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.24 E-value=0.037 Score=60.93 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 376 TEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 376 eedLrelFs~fG~I~~Vri~~~------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
++++++.+++||+|..|.|... ..--.||+|...++|.+|+-.|||+.|+|+.++..|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4688999999999998766432 122379999999999999999999999999999888764
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.18 E-value=0.012 Score=63.69 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=59.4
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec-------------ccccc----eEEEEeCCHHHHHHHHHHccCc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA-------------CKHRG----FVMISYYDIRAARNAMKALQNK 337 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit-------------gksrG----fAFV~F~d~e~A~kAl~~LnG~ 337 (987)
+..-.||+++||+.+...-|+++|++||.|-.|++. +.... -|.|+|.+...|.++...||+.
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 367899999999999999999999999999999761 11121 3789999999999999999999
Q ss_pred cccccc
Q 001976 338 PLRRRK 343 (987)
Q Consensus 338 ~i~Gr~ 343 (987)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999875
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.91 E-value=0.064 Score=54.22 Aligned_cols=76 Identities=30% Similarity=0.397 Sum_probs=53.9
Q ss_pred ccccceeeecCC------CCCCH---HHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001976 360 ANQGTLVVFNLD------SSVST---EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 360 ~~~~tLfV~NLp------~~vTe---edLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
.+..||.|.=+. ...++ ++|.+.|..||+|.=||+.. +.-+|+|.+-+.|.+|+. |+|.+++|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 345677766554 12222 37788899999999888875 478999999999999999 999999999999
Q ss_pred EEeccCCch
Q 001976 431 LEASRPGGA 439 (987)
Q Consensus 431 V~~a~~k~~ 439 (987)
|....|.-.
T Consensus 101 i~LKtpdW~ 109 (146)
T PF08952_consen 101 IRLKTPDWL 109 (146)
T ss_dssp EEE------
T ss_pred EEeCCccHH
Confidence 999877553
No 171
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.90 E-value=0.043 Score=66.14 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=61.5
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEE-EEE----ecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIR-TIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~-sVk----itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.+.|-+.|+|.+++-+||.++|..|-.+- +|. ..++..|-|.|.|++.++|.+|...|+++.|..+.+++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 35899999999999999999999997543 222 267788999999999999999999999999999988775
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.27 E-value=0.076 Score=50.62 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=51.9
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEE------------ecccccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY------------TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk------------itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~ 343 (987)
..+-|.|=+.|+. ....|.+.|++||+|.+.. .......+..|.|.+..+|++||. .||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567889899987 6677888999999998885 113355699999999999999995 8999998754
Q ss_pred c-ccccc
Q 001976 344 L-DIHYS 349 (987)
Q Consensus 344 L-~V~~a 349 (987)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 3 35554
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.16 E-value=0.09 Score=62.34 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=54.2
Q ss_pred CCCcEEEEccCCCC--CCh----HHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccc
Q 001976 275 HPSRTLFVRNINSN--VED----SELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (987)
Q Consensus 275 ~~srtLfVgNLP~~--vTE----edLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G 341 (987)
.-...|+|.|+|-- ..- .-|..+|+++|+|..+.+ .+..+||.|++|.+.++|+.|++.|||+.|.-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 34578999999852 112 234578999999999876 46799999999999999999999999988764
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.10 E-value=0.047 Score=62.14 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=61.3
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~--------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
+.|.|.||.+.++.++++.+|.-.|+|.++++++. ....|||.|.|...+..|.. |.++.|=++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999999873 23469999999999998877 7777777777777665
Q ss_pred c
Q 001976 435 R 435 (987)
Q Consensus 435 ~ 435 (987)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 175
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.05 E-value=0.31 Score=47.33 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=66.0
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEE
Q 001976 811 SRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVA 890 (987)
Q Consensus 811 ~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~ 890 (987)
.+|+|-+=-+|+.++...++..+-+.+.....-+.+--|.. -|.-=+-|-|.++++|..||+.|||+++...-. .+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 45666666889999888777667677777777666665644 466678999999999999999999999887755 459
Q ss_pred EEEe-eccc
Q 001976 891 SLAY-ARIQ 898 (987)
Q Consensus 891 ~v~y-A~iQ 898 (987)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=0.16 Score=60.39 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=58.5
Q ss_pred cccceeeecCCCCCC------HHHHHHHhhccCCEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeC-CcEE
Q 001976 361 NQGTLVVFNLDSSVS------TEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQI 429 (987)
Q Consensus 361 ~~~tLfV~NLp~~vT------eedLrelFs~fG~I~~Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~-Gr~L 429 (987)
....|+|.|+|---. ..-|..+|+++|+|..+.++. ..+||.|++|.+..+|+.|++.|||+.|. .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 345788999885322 345778999999999887763 36889999999999999999999999885 5676
Q ss_pred EEEec
Q 001976 430 KLEAS 434 (987)
Q Consensus 430 kV~~a 434 (987)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66543
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.59 E-value=0.056 Score=62.00 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=62.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeccCCchhh
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-DVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~-~I~Gr~LkV~~a~~k~~Rr 441 (987)
..||++||.+.++..+|..+|...-.-..=.++ -..||+||.+.+...|.+|++.++|+ ++.|+++.|..+.++..|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 368999999999999999999864110000011 14689999999999999999999998 7899999999999887654
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.48 E-value=0.24 Score=57.67 Aligned_cols=81 Identities=26% Similarity=0.317 Sum_probs=70.6
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEE
Q 001976 812 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVAS 891 (987)
Q Consensus 812 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~ 891 (987)
-|+|-|=-+|+.+|..+|+..+...++-=-|+-.++ ..--|---+-|-|.+..+|..||+.|||+.+...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR---d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR---DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee---cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 788889999999999999999998887777888888 3455666689999999999999999999998877766 999
Q ss_pred EEeec
Q 001976 892 LAYAR 896 (987)
Q Consensus 892 v~yA~ 896 (987)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.03 E-value=0.038 Score=60.08 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=47.3
Q ss_pred HHHHhhc-ccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 293 ELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 293 dLrelFs-~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
+|...|+ +||+|+.+++ ...-.|-+||.|...++|++|+..||+..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 9999999865 2235688999999999999999999999999999998776
No 180
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.03 E-value=0.075 Score=59.66 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=60.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccC--cEEEE-----EecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFG--DIRTI-----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG--~I~sV-----kitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
...-.+||+||-+.+|++||.+.....| .|.++ +..+.++|||+|...+..+.++-|+.|-.++|.|+.-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3457899999999999999999887666 23333 347899999999999999999999999999998876555
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.76 E-value=0.37 Score=48.62 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=57.9
Q ss_pred cccccceeeecCCCCC----CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 359 DANQGTLVVFNLDSSV----STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~v----TeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
+.+-.||+|.=|..++ +...+.+..+.||.|.+|...+ +.-|.|.|.|..+|.+|+.++.. ...|..+++.|-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3455688886555444 3444556667899999998875 67899999999999999998876 677888888886
Q ss_pred cC
Q 001976 435 RP 436 (987)
Q Consensus 435 ~~ 436 (987)
++
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 54
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.05 E-value=0.13 Score=61.46 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=66.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhc-cCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCee---CCcEEEEEec
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV---AGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~-fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I---~Gr~LkV~~a 434 (987)
....+.|+|.||=.-+|.-+|++++.+ .|.|.+. ++-+-+..|||.|.+.++|...+.+|||... +++.|.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 345679999999999999999999995 5666666 4445578999999999999999999999854 6799999998
Q ss_pred cCCc
Q 001976 435 RPGG 438 (987)
Q Consensus 435 ~~k~ 438 (987)
...+
T Consensus 520 ~~de 523 (718)
T KOG2416|consen 520 RADE 523 (718)
T ss_pred chhH
Confidence 7655
No 183
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.91 E-value=0.1 Score=58.87 Aligned_cols=106 Identities=15% Similarity=0.234 Sum_probs=77.2
Q ss_pred ccceeeecCCCCCCHHHHH---HHhhccCCEEEEEEcCCC------C--cEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001976 362 QGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQHK------H--NHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLr---elFs~fG~I~~Vri~~~s------k--G~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
..-+||-+|+..+.++.+. +.|.+||.|..|....+. . .-+||+|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888888877655543 489999999998876532 1 1389999999999999999999999999999
Q ss_pred EEeccCCchhhccchhhhhccCCccc----cCCCCCCCcccc
Q 001976 431 LEASRPGGARRFMVQSEQEQDDLNLC----QIPFDDLSSGQM 468 (987)
Q Consensus 431 V~~a~~k~~Rrl~qq~eq~q~e~nly----knLp~svt~e~L 468 (987)
..+...+.... ..+.+.++....+| ..-.++++.+++
T Consensus 157 a~~gttkycs~-~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~ 197 (327)
T KOG2068|consen 157 ASLGTTKYCSF-YLRNDICQNPDCMYLHEIGDQEDSFTKDEM 197 (327)
T ss_pred HhhCCCcchhH-HhhhhcccCccccccccccccccccchHHH
Confidence 99998877543 22255666667777 333444444443
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.17 E-value=0.15 Score=60.95 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=58.8
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhc-ccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc
Q 001976 271 PYGEHPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs-~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i 339 (987)
+.....+..|||.||-.-.|.-+|++++. .+|.|....| .+-+..|||.|.+.++|..-..+|+|..+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhcccc
Confidence 34567789999999999999999999999 6677777766 56778999999999999999999999754
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.06 E-value=0.37 Score=48.87 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=52.7
Q ss_pred CCCcEEEEccCC-----CCCChH----HHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 275 HPSRTLFVRNIN-----SNVEDS----ELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 275 ~~srtLfVgNLP-----~~vTEe----dLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
.+..||.|.=+. ...-++ +|.+.|..||++.-++.. .+.-+|+|.+-+.|-+|+. ++|..+.|+.|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 456777777555 123333 677889999998888763 3578999999999999995 999999999999
Q ss_pred ccccCC
Q 001976 346 IHYSIP 351 (987)
Q Consensus 346 V~~a~p 351 (987)
|+...|
T Consensus 101 i~LKtp 106 (146)
T PF08952_consen 101 IRLKTP 106 (146)
T ss_dssp EEE---
T ss_pred EEeCCc
Confidence 976654
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.11 E-value=0.77 Score=46.38 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=57.1
Q ss_pred CCCCCCcEEEEccCCCCCC----hHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVE----DSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vT----EedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
..+.+-.||.|+=|..++. -..+...++.||+|.+|...| +-.|.|.|.|..+|-+|+.+++. ..-|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4567789999987776653 234456778999999998844 45799999999999999998876 4556666666
Q ss_pred cc
Q 001976 348 YS 349 (987)
Q Consensus 348 ~a 349 (987)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 54
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.91 E-value=1.2 Score=41.36 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=44.0
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG 336 (987)
....+|. +|..+...||.++|+.||.|.--.+ ...-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3566666 9999999999999999999987777 455799999999999999987653
No 188
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.62 E-value=0.41 Score=56.08 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=58.8
Q ss_pred ceeeecCCCCC-CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 364 TLVVFNLDSSV-STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 364 tLfV~NLp~~v-TeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
.|-+.-.|... +-++|...|.+||+|..|.+--. .-.|.|+|.+..+|-+|.. .++..|+++.|+|-|-.+..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 33444444444 46889999999999999886432 4569999999999988887 89999999999999998855
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.61 E-value=0.67 Score=48.90 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=46.6
Q ss_pred CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhC--CCeeCCcEEEEEeccCCc
Q 001976 375 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 375 TeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LN--G~~I~Gr~LkV~~a~~k~ 438 (987)
..+.|+++|..|+.+..+...+. =+-..|.|.+.++|.+|...|+ +..+.|..++|.|+++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 35789999999999988776653 3458899999999999999999 999999999999996544
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.23 E-value=0.54 Score=52.14 Aligned_cols=75 Identities=17% Similarity=0.381 Sum_probs=55.1
Q ss_pred CCcEEEEccC--CCCCC---hHHHHHhhcccCcEEEEEe---ccc---ccceEEEEeCCHHHHHHHHHHccCcccccccc
Q 001976 276 PSRTLFVRNI--NSNVE---DSELKALFEQFGDIRTIYT---ACK---HRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (987)
Q Consensus 276 ~srtLfVgNL--P~~vT---EedLrelFs~fG~I~sVki---tgk---srGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L 344 (987)
+++.|.++|. +-.++ ++++++..++||.|..|.+ .+. ..--.||+|...++|.+|+-.|||..|.||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3444555554 22233 4577889999999998865 111 12257999999999999999999999999999
Q ss_pred cccccC
Q 001976 345 DIHYSI 350 (987)
Q Consensus 345 ~V~~a~ 350 (987)
...|..
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887754
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.09 E-value=0.64 Score=55.38 Aligned_cols=73 Identities=21% Similarity=0.244 Sum_probs=57.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhc--ccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC--ccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFE--QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs--~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG--~~i~Gr~L~V~ 347 (987)
.....+.|.++-||..+-+|+++.+|+ .|-++.+|... ...--||+|++..||+.|.+.|.. ++|.|++|..+
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 344567788899999999999999998 47778877652 223468999999999999998865 56778777654
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.45 E-value=0.85 Score=54.42 Aligned_cols=98 Identities=12% Similarity=0.203 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhc--cCCEEEEEEcCCCCc
Q 001976 323 DIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI--YGEIREIRDTQHKHN 400 (987)
Q Consensus 323 d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~--fG~I~~Vri~~~skG 400 (987)
|.+-...++++.-+..+..+-.+|.- ..+.+.|.|+-||..+..|+++.+|.. +-++.+|.+.-+ .
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp----------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~ 213 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRP----------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--D 213 (684)
T ss_pred chHHHHHHHhcCCCceeccCcccccc----------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--C
Confidence 34445566666666666655555542 234578889999999999999999985 677788876432 2
Q ss_pred EEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEE
Q 001976 401 HKFIEFYDIRAAETALRTLNR--SDVAGKQIKLE 432 (987)
Q Consensus 401 ~aFVeF~d~edA~kAL~~LNG--~~I~Gr~LkV~ 432 (987)
--||+|++..||+.|.+.|.. ++|.||+|...
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 359999999999999988854 36777776543
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.88 E-value=2.2 Score=47.83 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=58.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcE-EEEEeccCCc
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ-IKLEASRPGG 438 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~-LkV~~a~~k~ 438 (987)
..-|.|.++|+.-. .-|..+|++||+|...... ....+-+|.|.+.-+|.+||. .||+.|+|.. |-|..+..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 45678888887654 4677899999999876543 567799999999999999999 8999998854 5577776654
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.76 E-value=0.34 Score=54.80 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=61.9
Q ss_pred CcEEEEccCCCCCChHHHH---HhhcccCcEEEEEecccc--------cceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 277 SRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTACKH--------RGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLr---elFs~fG~I~sVkitgks--------rGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
.+-+||-+|+..+.++++. +.|.+||.|..|.+.+.. -.-++|+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4668889999887666554 589999999999763321 12489999999999999999999999999999
Q ss_pred ccccCCCC
Q 001976 346 IHYSIPKD 353 (987)
Q Consensus 346 V~~a~pk~ 353 (987)
+.+..++-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88876553
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.84 E-value=0.9 Score=47.56 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=46.5
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcc-cCcE---EEEE--ec-----ccccceEEEEeCCHHHHHHHHHHccCcccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQ-FGDI---RTIY--TA-----CKHRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~-fG~I---~sVk--it-----gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr 342 (987)
....+|.|++||+++||+++.+.+.. +++- ..+. .. ...-.-|||.|.+.+++......++|..+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 34579999999999999999998887 6765 3332 11 11224699999999999999999999877554
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.68 E-value=2.9 Score=36.76 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=42.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhcc---CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIY---GEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~f---G~I~~Vri~~~skG~aFVeF~d~edA~kAL~~L 419 (987)
...|+|.+++. ++.++|+.+|..| .....|..+.+ .-|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 34799999865 8889999999998 12345665543 45889999999999999865
No 197
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=83.80 E-value=0.98 Score=51.11 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=63.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCC--EEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~--I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
.++||+||-+.+|++||.+....-|- |.++++. +.+||||+|-..+..+.++-++.|-.++|.|..-.|..+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 47999999999999999998887653 4444443 4589999999999999999999999999999877776665
Q ss_pred CCchhh
Q 001976 436 PGGARR 441 (987)
Q Consensus 436 ~k~~Rr 441 (987)
.....+
T Consensus 161 K~~~ak 166 (498)
T KOG4849|consen 161 KTNQAK 166 (498)
T ss_pred hhhHHH
Confidence 544333
No 198
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.83 E-value=4.4 Score=35.63 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=41.3
Q ss_pred CcEEEEccCCCCCChHHHHHhhccc----CcEEEEEecccccceEEEEeCCHHHHHHHHHHc
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKAL 334 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~f----G~I~sVkitgksrGfAFV~F~d~e~A~kAl~~L 334 (987)
..+|+|+++. +++.++|+.+|..| ++..-=.+ .-.-|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWI---dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWI---DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEe---cCCcEEEEECCHHHHHHHHHcC
Confidence 4679999996 49999999999999 54332233 2235789999999999999754
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.42 E-value=0.92 Score=56.43 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=64.9
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEeccCCc
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV--AGKQIKLEASRPGG 438 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I--~Gr~LkV~~a~~k~ 438 (987)
.+.++.|.+-..+-.-|..+|.+||.|.+++..++ -..|.|+|...+.|..|+.+|+|+++ -|-+.+|.+++.-.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 35677788888899999999999999999886654 56799999999999999999999976 58889999998644
No 200
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=81.67 E-value=5.8 Score=36.94 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=41.0
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG 421 (987)
..+|. .|..+-..||.++|+.||.|.---+ ...-|||...+.+.|..|+..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 44555 9999999999999999999864333 246899999999999999998863
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.36 E-value=3.6 Score=46.21 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=51.9
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~ 343 (987)
..=|-|-++|+. .-..|..+|++||+|...... ..-.+-+|.|.+.-+|++||. .+|+.|.|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 455777788874 456788899999999998874 666799999999999999995 7888877643
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=76.14 E-value=2.9 Score=44.22 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=45.3
Q ss_pred ChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHcc--CcccccccccccccCCC
Q 001976 290 EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 290 TEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~Ln--G~~i~Gr~L~V~~a~pk 352 (987)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45889999999998887765 2444568899999999999999999 89999999999988544
No 203
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=75.23 E-value=2.8 Score=46.11 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=51.3
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEE----EecccccceEEEEeCCHHHHHHHHHHccC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTI----YTACKHRGFVMISYYDIRAARNAMKALQN 336 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sV----kitgksrGfAFV~F~d~e~A~kAl~~LnG 336 (987)
..|||.||..-+.-+.|.+.|+.||+|... ...++..+-++|.|...-.|.+|++.+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 789999999999999999999999998754 23577778899999999999999987643
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=74.98 E-value=1.3 Score=52.08 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=63.5
Q ss_pred CCCCcEEEEccCCCCC-ChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 274 EHPSRTLFVRNINSNV-EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 274 e~~srtLfVgNLP~~v-TEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
....+.|-+.-+|... |-++|...|.+||+|..|.+... --.|.|+|.+..+|-+|.. ..+..|.++.|+|.|..+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 4455677777777765 55889999999999999988433 5579999999999988874 8999999999999998764
Q ss_pred C
Q 001976 353 D 353 (987)
Q Consensus 353 ~ 353 (987)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 3
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=74.86 E-value=2.5 Score=51.63 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=63.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
.....++||+|+-..+.++-++.+...+|.|.+++... |||.+|..+..+.+|+..++...++|+.+.+..-
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 34566999999999999999999999999999877543 9999999999999999999999999988877653
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.06 E-value=6.7 Score=35.10 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHhhccCC-----EEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 372 SSVSTEELHQIFGIYGE-----IREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 372 ~~vTeedLrelFs~fG~-----I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
..++..+|..++...+. |-.|++. ..|.||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677788887776544 4456765 4589998755 4899999999999999999999875
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=73.68 E-value=2.6 Score=39.50 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=45.0
Q ss_pred EEEEeCCHHHHHHHHHHccC-cccccccccccccCCCCCCC-----cccccccceeeecCCCCCCHHHHHHHhh
Q 001976 317 VMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIPKDNPS-----EKDANQGTLVVFNLDSSVSTEELHQIFG 384 (987)
Q Consensus 317 AFV~F~d~e~A~kAl~~LnG-~~i~Gr~L~V~~a~pk~~~~-----~~~~~~~tLfV~NLp~~vTeedLrelFs 384 (987)
|.|+|.+..-|++.++.-.- ..+.+..+.|....-..... ......++|.|.|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999963221 33455555554332111111 1234667999999999999999988643
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=72.43 E-value=21 Score=34.78 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=46.4
Q ss_pred ceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCC---cEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKH---NHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG-~I~~Vri~~~sk---G~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
.+.+...|.-++-++|..+.+.+- .|..+++.++.. -.+.++|.+.++|..=.+.+||+.|..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444555555666677776666654 466788876643 358999999999999999999998753
No 209
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=70.58 E-value=7.4 Score=38.71 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=71.8
Q ss_pred HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCccc--ccccceeeec
Q 001976 292 SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKD--ANQGTLVVFN 369 (987)
Q Consensus 292 edLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~--~~~~tLfV~N 369 (987)
+.|..+....|.+.-..+ ..++..+.|.+.+++.++++ .....+.+..+.++.-.|.....+.. ...--|.|.|
T Consensus 36 ~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~g 111 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYG 111 (153)
T ss_pred HHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhcc
Confidence 344444445555554444 67899999999999999985 45556777777777666554433222 1233578899
Q ss_pred CCCC-CCHHHHHHHhhccCCEEEEEEcCC
Q 001976 370 LDSS-VSTEELHQIFGIYGEIREIRDTQH 397 (987)
Q Consensus 370 Lp~~-vTeedLrelFs~fG~I~~Vri~~~ 397 (987)
||.. .+++-|+++.+.+|++..+.....
T Consensus 112 lP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 112 LPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred CCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 9987 578889999999999999986543
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=69.09 E-value=12 Score=33.28 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=43.2
Q ss_pred CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 001976 373 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (987)
Q Consensus 373 ~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV 431 (987)
.++-++++..+..|+-. .|+ .+..| -||-|.+.++|+++....+|+.+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DDRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ecCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999653 333 23344 489999999999999999999998877765
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.03 E-value=57 Score=36.98 Aligned_cols=145 Identities=18% Similarity=0.311 Sum_probs=90.9
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecc------------cccceEEEEeCCHHHHHHHHH----HccC--
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC------------KHRGFVMISYYDIRAARNAMK----ALQN-- 336 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitg------------ksrGfAFV~F~d~e~A~kAl~----~LnG-- 336 (987)
-.+|.|...|+..+++-..+...|-+||+|++|++-. +......+.|-+.+.|-.... .|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998621 224578899999888765432 2222
Q ss_pred cccccccccccccCCCC------CCCcc----------------cccccceeeecCCCCCCHHH-HHHHh---hccCC--
Q 001976 337 KPLRRRKLDIHYSIPKD------NPSEK----------------DANQGTLVVFNLDSSVSTEE-LHQIF---GIYGE-- 388 (987)
Q Consensus 337 ~~i~Gr~L~V~~a~pk~------~~~~~----------------~~~~~tLfV~NLp~~vTeed-LrelF---s~fG~-- 388 (987)
+.+....|.+.|..-+- +..+. ....+.|.|. +...+.+++ +.+.+ ..-+.
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCce
Confidence 34566677766543110 00000 1123455554 223443333 33222 22232
Q ss_pred --EEEEEEcCC-------CCcEEEEEECCHHHHHHHHHHhC
Q 001976 389 --IREIRDTQH-------KHNHKFIEFYDIRAAETALRTLN 420 (987)
Q Consensus 389 --I~~Vri~~~-------skG~aFVeF~d~edA~kAL~~LN 420 (987)
|++|.++.. .+.||.+.|-+...|...+..|.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 455666431 46799999999999999988664
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.67 E-value=18 Score=42.77 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=55.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCC---CcEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHK---HNHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG-~I~~Vri~~~s---kG~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
...|+|--+|..++-.||..++..+- .|..|+++++. +-...|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998764 46778887753 3348999999999999999999998863
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=58.84 E-value=24 Score=31.43 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=42.3
Q ss_pred CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 288 NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 288 ~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
.++-++++..+..|+-..-+ . ...| -||.|.+.++|+++....+|..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~-~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIR-D--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEE-e--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999854332 2 1233 489999999999999999999887766543
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=54.12 E-value=6.1 Score=49.59 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=59.9
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc--ccccccccccCCCC
Q 001976 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL--RRRKLDIHYSIPKD 353 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i--~Gr~L~V~~a~pk~ 353 (987)
+.++-|.+-..+-.-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+++++|+++ -|-+.+|.++.+..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4455666667888899999999999999886 34556899999999999999999999875 46777777776543
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=52.83 E-value=10 Score=46.72 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
...+.-+|||+||-..+..+-++.+...+|-|.+++... |+|..|.....+.+|+..+.-..+.|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 445678999999999999999999999999999886533 999999999999999998888889888877754
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.37 E-value=19 Score=38.10 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=52.9
Q ss_pred ceeeecCCCCC-----CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEEEeccCC
Q 001976 364 TLVVFNLDSSV-----STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKLEASRPG 437 (987)
Q Consensus 364 tLfV~NLp~~v-----TeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr-~LkV~~a~~k 437 (987)
++.+.+++..+ .......+|.+|-+..-.++.+ +.+..-|.|.+++.|..|...+++..|.|+ .++.-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 46667776544 2334455666665544444332 355678899999999999999999999998 8888888875
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
-
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.62 E-value=63 Score=39.60 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEccCCCC-CChHHHHHhhccc----CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSN-VEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~-vTEedLrelFs~f----G~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
.....+++|-|.|+.++ |...+|.-+|..| |.|.+|.+ ..+ +|- .+.|..-.+.|-++.+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~I-YpS------eFG--------keRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKI-YPS------EFG--------KERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEe-chh------hhh--------HHHhhhhcccCChhhh
Confidence 34567899999999987 8889999888855 58888887 111 111 1223334445544433
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001976 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 347 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
- .+........ -+...-++-.++-+.+|+. ..+ .-.||.|+|.+.+.|.+....++|.+|..
T Consensus 234 ~--~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq~-~rL-----kYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 234 F--KPVEEYKESE----------SDDEEEEDVDREKLRQYQL-NRL-----KYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred c--cccccCcccc----------cchhhhhhHHHHHHHHHHh-hhh-----eeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 2 1111111100 1111112223444444431 111 13479999999999999999999999864
Q ss_pred --cEEEEEe
Q 001976 427 --KQIKLEA 433 (987)
Q Consensus 427 --r~LkV~~ 433 (987)
..|-+.|
T Consensus 296 S~~~~DLRF 304 (650)
T KOG2318|consen 296 SANKLDLRF 304 (650)
T ss_pred ccceeeeee
Confidence 4444444
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=47.35 E-value=41 Score=30.08 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCChHHHHHhhcccC-----cEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 288 NVEDSELKALFEQFG-----DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 288 ~vTEedLrelFs~fG-----~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.++..+|..++...+ .|-.|.+ ...|+||+-.. +.|+.+++.|++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477888888887665 3555655 45688998765 4788999999999999999998753
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.99 E-value=17 Score=40.48 Aligned_cols=62 Identities=27% Similarity=0.510 Sum_probs=42.5
Q ss_pred cEEEEccCCCC------------CChHHHHHhhcccCcEEEEEe----------cccc-----cce---------EEEEe
Q 001976 278 RTLFVRNINSN------------VEDSELKALFEQFGDIRTIYT----------ACKH-----RGF---------VMISY 321 (987)
Q Consensus 278 rtLfVgNLP~~------------vTEedLrelFs~fG~I~sVki----------tgks-----rGf---------AFV~F 321 (987)
.|||+.+||-. -+++-|+..|+.||.|+.|.+ +++. .|| |||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888888743 367889999999999999854 3443 333 35666
Q ss_pred CCHHHHHHHHHHccCccc
Q 001976 322 YDIRAARNAMKALQNKPL 339 (987)
Q Consensus 322 ~d~e~A~kAl~~LnG~~i 339 (987)
.....-..|+..|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 655666667777777543
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.79 E-value=1.1e+02 Score=28.69 Aligned_cols=55 Identities=7% Similarity=0.228 Sum_probs=41.2
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CEEEEEEcCCCCc--EEEEEECCHHHHHHHHHH
Q 001976 364 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALRT 418 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~-fG-~I~~Vri~~~skG--~aFVeF~d~edA~kAL~~ 418 (987)
+-|+.-++...+..+|++.++. || +|..|.......+ -|||++..-.+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 5677788999999999999987 65 4666665433334 599999998888776553
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.47 E-value=1.1e+02 Score=35.94 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=45.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcCCCCcEEEEEECCHHHHHHHHH
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I-~~Vri~~~skG~aFVeF~d~edA~kAL~ 417 (987)
-...|-|.++|...-.+||...|+.|++- ..|+++- ...+|--|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhh
Confidence 34688999999999999999999999763 4455553 4679999999999999998
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.79 E-value=1.3e+02 Score=27.72 Aligned_cols=54 Identities=9% Similarity=0.254 Sum_probs=39.9
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CEEEEEEcCCCCc--EEEEEECCHHHHHHHHH
Q 001976 364 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALR 417 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~-fG-~I~~Vri~~~skG--~aFVeF~d~edA~kAL~ 417 (987)
+-|+..++...+..+|++.++. || +|..|.......+ -|||++..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 5678888999999999999987 55 4666654433334 49999988877776554
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=23.67 E-value=45 Score=35.39 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=52.7
Q ss_pred cEEEEccCCCCCCh-----HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccc-cccccccCC
Q 001976 278 RTLFVRNINSNVED-----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDIHYSIP 351 (987)
Q Consensus 278 rtLfVgNLP~~vTE-----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr-~L~V~~a~p 351 (987)
.++.+.+|+..+-. ....++|.+|-+....++ -++.+..-|.|.+.+.|..|...++...|.|+ .++.-++++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 55777777766432 233466777666555444 34566788899999999999999999999988 676666654
Q ss_pred C
Q 001976 352 K 352 (987)
Q Consensus 352 k 352 (987)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 3
Done!