Query 001976
Match_columns 987
No_of_seqs 770 out of 3242
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.9E-32 6.7E-37 294.8 20.2 235 149-441 23-268 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-31 4.2E-36 289.7 15.9 236 147-437 40-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 6.5E-30 2.2E-34 265.8 16.2 166 274-441 12-185 (213)
4 3smz_A Protein raver-1, ribonu 100.0 1.2E-28 3.9E-33 265.4 20.4 195 275-487 20-228 (284)
5 3md3_A Nuclear and cytoplasmic 100.0 1.7E-28 5.8E-33 240.7 17.9 157 278-436 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 4.6E-28 1.6E-32 238.9 18.3 155 276-434 2-168 (168)
7 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-28 1.1E-32 263.0 17.8 203 271-487 35-256 (292)
8 1fxl_A Paraneoplastic encephal 100.0 5.8E-28 2E-32 237.2 17.9 155 276-434 1-167 (167)
9 2qfj_A FBP-interacting repress 100.0 8.9E-28 3E-32 246.7 17.7 165 275-439 26-207 (216)
10 1l3k_A Heterogeneous nuclear r 100.0 9.3E-28 3.2E-32 242.9 17.2 168 272-441 8-187 (196)
11 3pgw_A U1-A; protein-RNA compl 100.0 2E-27 6.7E-32 255.6 20.6 164 273-436 5-282 (282)
12 2adc_A Polypyrimidine tract-bi 100.0 2.6E-27 9.1E-32 248.8 20.6 164 274-437 31-228 (229)
13 1fje_B Nucleolin RBD12, protei 99.9 6.3E-28 2.1E-32 240.7 13.1 162 273-437 9-174 (175)
14 2g4b_A Splicing factor U2AF 65 99.9 2.7E-27 9.2E-32 234.7 16.5 153 276-434 3-171 (172)
15 1qm9_A Polypyrimidine tract-bi 99.9 2E-27 7E-32 242.2 15.7 162 276-437 2-197 (198)
16 2cjk_A Nuclear polyadenylated 99.9 1E-27 3.4E-32 236.7 12.5 156 276-438 2-167 (167)
17 3tyt_A Heterogeneous nuclear r 99.9 6E-27 2.1E-31 243.9 18.1 159 276-434 3-204 (205)
18 2yh0_A Splicing factor U2AF 65 99.9 4E-27 1.4E-31 238.6 16.4 162 276-439 3-196 (198)
19 3nmr_A Cugbp ELAV-like family 99.9 6.9E-27 2.4E-31 231.6 16.9 157 276-435 2-175 (175)
20 3sde_A Paraspeckle component 1 99.9 4.4E-25 1.5E-29 236.5 16.8 157 273-440 18-182 (261)
21 1fje_B Nucleolin RBD12, protei 99.8 4.5E-20 1.5E-24 183.8 8.0 162 147-352 12-174 (175)
22 4f02_A Polyadenylate-binding p 99.8 3.7E-20 1.3E-24 192.4 7.3 166 147-354 14-183 (213)
23 2yh0_A Splicing factor U2AF 65 99.8 9.9E-20 3.4E-24 184.3 10.1 183 149-354 5-196 (198)
24 2i2y_A Fusion protein consists 99.8 3.2E-19 1.1E-23 175.7 12.0 127 311-438 10-149 (150)
25 3md3_A Nuclear and cytoplasmic 99.8 1.5E-19 5.1E-24 177.0 8.8 158 150-350 2-165 (166)
26 1l3k_A Heterogeneous nuclear r 99.8 1.1E-19 3.9E-24 183.5 7.3 170 147-356 12-187 (196)
27 1b7f_A Protein (SXL-lethal pro 99.8 2.7E-19 9.1E-24 176.2 9.3 158 148-349 3-168 (168)
28 2qfj_A FBP-interacting repress 99.8 2.3E-19 8E-24 184.0 7.5 174 149-355 29-208 (216)
29 2g4b_A Splicing factor U2AF 65 99.8 3.3E-19 1.1E-23 176.5 7.5 158 149-349 5-171 (172)
30 2kn4_A Immunoglobulin G-bindin 99.8 4.5E-18 1.5E-22 168.2 14.7 131 310-440 9-153 (158)
31 2cjk_A Nuclear polyadenylated 99.8 1.9E-19 6.4E-24 177.4 3.8 157 149-352 4-166 (167)
32 1fxl_A Paraneoplastic encephal 99.8 1.6E-18 5.6E-23 169.8 10.3 157 149-349 3-167 (167)
33 3nmr_A Cugbp ELAV-like family 99.7 1.9E-18 6.7E-23 170.8 8.8 162 148-349 3-174 (175)
34 4f25_A Polyadenylate-binding p 99.7 3E-18 1E-22 162.0 9.2 103 276-378 4-113 (115)
35 3pgw_A U1-A; protein-RNA compl 99.7 4.6E-18 1.6E-22 182.6 10.2 77 274-350 204-281 (282)
36 3tyt_A Heterogeneous nuclear r 99.7 6.7E-18 2.3E-22 175.7 9.0 172 149-349 5-204 (205)
37 4f25_A Polyadenylate-binding p 99.7 1.2E-17 4.1E-22 157.9 9.2 104 362-466 5-112 (115)
38 2adc_A Polypyrimidine tract-bi 99.7 4.8E-17 1.6E-21 170.7 12.5 178 146-352 32-228 (229)
39 1qm9_A Polypyrimidine tract-bi 99.7 7.1E-17 2.4E-21 164.3 12.1 175 149-352 4-197 (198)
40 3sde_A Paraspeckle component 1 99.7 1.1E-16 3.6E-21 171.5 10.4 153 146-354 20-181 (261)
41 2kn4_A Immunoglobulin G-bindin 99.6 1.1E-15 3.6E-20 151.2 13.2 83 273-355 66-153 (158)
42 2i2y_A Fusion protein consists 99.6 1E-15 3.4E-20 150.6 10.3 138 207-353 11-149 (150)
43 3lqv_A PRE-mRNA branch site pr 99.6 5E-16 1.7E-20 145.8 6.8 103 274-388 5-109 (115)
44 4fxv_A ELAV-like protein 1; RN 99.6 1.1E-15 3.8E-20 141.2 8.6 76 276-351 18-98 (99)
45 4fxv_A ELAV-like protein 1; RN 99.6 1.8E-15 6.2E-20 139.8 9.2 76 361-436 18-98 (99)
46 2lea_A Serine/arginine-rich sp 99.6 1.2E-15 4.2E-20 148.6 7.4 121 315-440 5-130 (135)
47 2hvz_A Splicing factor, argini 99.6 3.9E-15 1.3E-19 136.5 8.3 94 278-371 1-100 (101)
48 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.8E-15 2E-19 147.9 9.3 123 319-441 11-156 (165)
49 3s8s_A Histone-lysine N-methyl 99.6 1.1E-14 3.6E-19 137.3 10.1 81 361-441 5-90 (110)
50 2lxi_A RNA-binding protein 10; 99.5 2.9E-15 1E-19 136.0 5.8 79 277-355 1-86 (91)
51 3s8s_A Histone-lysine N-methyl 99.5 1.1E-14 3.9E-19 137.1 9.6 79 274-352 3-86 (110)
52 2hvz_A Splicing factor, argini 99.5 6.4E-15 2.2E-19 135.1 7.4 78 363-440 1-78 (101)
53 1whw_A Hypothetical protein ri 99.5 2.1E-14 7.2E-19 131.0 10.4 82 274-355 5-91 (99)
54 1sjq_A Polypyrimidine tract-bi 99.5 9.9E-15 3.4E-19 137.2 8.3 81 360-441 14-96 (105)
55 2wbr_A GW182, gawky, LD47780P; 99.5 9.7E-15 3.3E-19 132.9 7.8 75 361-436 6-80 (89)
56 3r27_A HnRNP L, heterogeneous 99.5 2E-14 7E-19 133.9 10.2 78 360-438 19-98 (100)
57 1sjq_A Polypyrimidine tract-bi 99.5 2E-14 6.9E-19 135.1 10.0 83 273-356 12-96 (105)
58 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.4E-14 1.5E-18 129.9 12.1 82 359-440 12-96 (103)
59 2do4_A Squamous cell carcinoma 99.5 3.2E-14 1.1E-18 130.2 11.0 83 272-354 12-98 (100)
60 3r27_A HnRNP L, heterogeneous 99.5 1.6E-14 5.6E-19 134.6 9.1 80 273-353 17-98 (100)
61 2d9p_A Polyadenylate-binding p 99.5 3.9E-14 1.3E-18 130.3 11.5 85 272-356 10-97 (103)
62 2cph_A RNA binding motif prote 99.5 4.5E-14 1.5E-18 130.4 11.8 83 358-440 11-100 (107)
63 1x5u_A Splicing factor 3B subu 99.5 4E-14 1.4E-18 130.5 11.4 84 272-355 10-98 (105)
64 1whw_A Hypothetical protein ri 99.5 4.2E-14 1.4E-18 129.0 11.4 81 360-440 6-91 (99)
65 2lxi_A RNA-binding protein 10; 99.5 6.2E-15 2.1E-19 133.9 5.8 76 363-438 2-84 (91)
66 2do4_A Squamous cell carcinoma 99.5 4.2E-14 1.4E-18 129.4 11.4 82 358-439 13-98 (100)
67 1x4a_A Splicing factor, argini 99.5 4.5E-14 1.6E-18 131.3 11.7 84 272-355 17-102 (109)
68 2dnz_A Probable RNA-binding pr 99.5 4.2E-14 1.4E-18 127.9 10.9 81 275-355 3-88 (95)
69 2d9p_A Polyadenylate-binding p 99.5 3.2E-14 1.1E-18 130.9 10.3 83 359-441 12-97 (103)
70 2dgv_A HnRNP M, heterogeneous 99.5 4.3E-14 1.5E-18 127.1 10.8 82 274-355 5-89 (92)
71 4a8x_A RNA-binding protein wit 99.5 2.9E-14 1E-18 126.7 9.6 79 361-439 3-87 (88)
72 2dnh_A Bruno-like 5, RNA bindi 99.5 5.8E-14 2E-18 129.4 11.9 83 273-355 11-100 (105)
73 3md1_A Nuclear and cytoplasmic 99.5 2.7E-14 9.1E-19 125.8 9.2 77 277-353 1-82 (83)
74 2dgs_A DAZ-associated protein 99.5 5.7E-14 1.9E-18 128.3 11.7 82 273-355 6-92 (99)
75 2cq0_A Eukaryotic translation 99.5 4.1E-14 1.4E-18 130.1 10.7 83 273-355 11-98 (103)
76 2dgo_A Cytotoxic granule-assoc 99.5 5.7E-14 2E-18 131.7 11.9 84 272-355 10-98 (115)
77 2cq1_A PTB-like protein L; RRM 99.5 5.9E-14 2E-18 130.7 11.8 80 360-440 13-94 (101)
78 3bs9_A Nucleolysin TIA-1 isofo 99.5 3.2E-14 1.1E-18 126.4 9.6 77 361-437 5-86 (87)
79 2dnm_A SRP46 splicing factor; 99.5 3.2E-14 1.1E-18 130.9 9.9 84 272-355 8-96 (103)
80 1why_A Hypothetical protein ri 99.5 5.6E-14 1.9E-18 128.0 11.4 79 360-439 15-95 (97)
81 1x4a_A Splicing factor, argini 99.5 6.4E-14 2.2E-18 130.3 12.0 81 359-439 19-101 (109)
82 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.2E-14 7.4E-19 127.5 8.3 78 275-352 4-86 (87)
83 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.5E-14 1.2E-18 125.6 9.6 76 360-435 5-85 (85)
84 2x1f_A MRNA 3'-END-processing 99.5 3E-14 1E-18 129.6 9.3 79 276-354 1-84 (96)
85 2cph_A RNA binding motif prote 99.5 5.9E-14 2E-18 129.6 11.4 84 272-355 10-100 (107)
86 2cq3_A RNA-binding protein 9; 99.5 7.3E-14 2.5E-18 128.5 11.9 83 358-440 11-96 (103)
87 2ad9_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 135.9 10.4 85 271-356 25-111 (119)
88 3md1_A Nuclear and cytoplasmic 99.5 4.2E-14 1.4E-18 124.5 9.8 76 363-438 2-82 (83)
89 3pgw_S U1-70K; protein-RNA com 99.5 1.1E-14 3.8E-19 167.9 7.8 147 293-439 8-184 (437)
90 2dgx_A KIAA0430 protein; RRM d 99.5 5.6E-14 1.9E-18 128.3 10.9 79 361-439 8-92 (96)
91 1wex_A Hypothetical protein (r 99.5 5.1E-14 1.7E-18 131.7 10.7 83 272-355 10-94 (104)
92 2cq3_A RNA-binding protein 9; 99.5 8.6E-14 3E-18 128.0 12.0 84 272-355 10-96 (103)
93 2cpz_A CUG triplet repeat RNA- 99.5 4.7E-14 1.6E-18 132.4 10.4 84 272-355 20-108 (115)
94 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.8E-14 1.3E-18 129.9 9.5 81 360-440 10-95 (102)
95 1x4h_A RNA-binding protein 28; 99.5 6.7E-14 2.3E-18 130.1 11.3 84 272-355 10-104 (111)
96 1oo0_B CG8781-PA, drosophila Y 99.5 5.6E-14 1.9E-18 130.8 10.7 82 359-440 23-109 (110)
97 2dgs_A DAZ-associated protein 99.5 6.6E-14 2.3E-18 127.9 11.0 80 360-440 8-92 (99)
98 1x4h_A RNA-binding protein 28; 99.5 9.6E-14 3.3E-18 129.0 12.1 83 359-441 12-105 (111)
99 2cqc_A Arginine/serine-rich sp 99.5 8.2E-14 2.8E-18 125.7 11.3 78 359-436 12-94 (95)
100 2x1f_A MRNA 3'-END-processing 99.5 6.9E-14 2.4E-18 127.2 10.9 79 362-440 2-85 (96)
101 1p27_B RNA-binding protein 8A; 99.5 3.6E-14 1.2E-18 131.0 9.2 81 273-353 19-104 (106)
102 2dnq_A RNA-binding protein 4B; 99.5 5.6E-14 1.9E-18 126.3 10.1 78 360-440 6-83 (90)
103 2dgo_A Cytotoxic granule-assoc 99.5 7.1E-14 2.4E-18 131.0 11.2 83 359-441 12-99 (115)
104 3mdf_A Peptidyl-prolyl CIS-tra 99.5 4.2E-14 1.4E-18 125.1 9.1 77 274-350 4-85 (85)
105 1p27_B RNA-binding protein 8A; 99.5 4.4E-14 1.5E-18 130.4 9.6 81 359-439 20-105 (106)
106 1x4d_A Matrin 3; structural ge 99.5 3.6E-14 1.2E-18 132.5 9.0 78 360-438 13-93 (102)
107 1wex_A Hypothetical protein (r 99.5 5.4E-14 1.8E-18 131.5 10.2 80 360-440 13-94 (104)
108 1x5u_A Splicing factor 3B subu 99.5 7E-14 2.4E-18 128.9 10.8 82 359-440 12-98 (105)
109 2cqi_A Nucleolysin TIAR; RNA r 99.5 7.8E-14 2.7E-18 128.3 11.1 84 272-355 10-96 (103)
110 2cpf_A RNA binding motif prote 99.5 5.4E-14 1.8E-18 128.0 9.9 81 275-355 3-91 (98)
111 1x4c_A Splicing factor, argini 99.5 7.5E-14 2.6E-18 130.1 10.9 78 360-439 13-95 (108)
112 1wf1_A RNA-binding protein RAL 99.5 4.4E-14 1.5E-18 131.8 9.3 95 340-438 6-101 (110)
113 2dnz_A Probable RNA-binding pr 99.5 7.5E-14 2.6E-18 126.2 10.5 80 361-440 4-88 (95)
114 1x4d_A Matrin 3; structural ge 99.5 3.8E-14 1.3E-18 132.4 8.7 80 274-354 12-94 (102)
115 2ad9_A Polypyrimidine tract-bi 99.5 3.5E-14 1.2E-18 136.3 8.6 81 360-441 29-111 (119)
116 2cq1_A PTB-like protein L; RRM 99.5 9.7E-14 3.3E-18 129.2 11.4 83 272-355 10-94 (101)
117 2jrs_A RNA-binding protein 39; 99.5 6.1E-14 2.1E-18 131.3 10.1 82 272-353 21-107 (108)
118 1x5s_A Cold-inducible RNA-bind 99.5 4.4E-14 1.5E-18 129.5 8.9 81 360-440 10-95 (102)
119 2cq0_A Eukaryotic translation 99.5 6.2E-14 2.1E-18 129.0 9.8 82 359-440 12-98 (103)
120 2cpz_A CUG triplet repeat RNA- 99.5 5.2E-14 1.8E-18 132.2 9.5 83 359-441 22-109 (115)
121 1x5t_A Splicing factor 3B subu 99.5 3.5E-14 1.2E-18 128.6 8.0 81 275-355 3-89 (96)
122 1why_A Hypothetical protein ri 99.5 1.1E-13 3.9E-18 126.0 11.4 81 273-354 13-95 (97)
123 2e5h_A Zinc finger CCHC-type a 99.5 7.4E-14 2.5E-18 126.0 10.0 78 273-350 12-94 (94)
124 1x4g_A Nucleolysin TIAR; struc 99.5 7.3E-14 2.5E-18 130.1 10.3 80 360-440 23-102 (109)
125 2dnh_A Bruno-like 5, RNA bindi 99.5 9.1E-14 3.1E-18 128.1 10.8 82 360-441 13-101 (105)
126 2cpf_A RNA binding motif prote 99.5 4.9E-14 1.7E-18 128.3 8.8 80 361-440 4-91 (98)
127 2lea_A Serine/arginine-rich sp 99.5 2.6E-14 9E-19 139.2 7.4 84 272-355 42-130 (135)
128 1x5s_A Cold-inducible RNA-bind 99.5 5.6E-14 1.9E-18 128.8 9.2 83 273-355 8-95 (102)
129 2dhg_A TRNA selenocysteine ass 99.5 1E-13 3.4E-18 127.6 10.8 83 273-355 5-93 (104)
130 2e5h_A Zinc finger CCHC-type a 99.5 1.5E-13 5.2E-18 123.9 11.8 77 359-435 13-94 (94)
131 2dgu_A Heterogeneous nuclear r 99.5 9.8E-14 3.3E-18 127.9 10.7 79 360-441 9-87 (103)
132 2dnq_A RNA-binding protein 4B; 99.5 1E-13 3.5E-18 124.6 10.5 79 274-355 5-83 (90)
133 2cqc_A Arginine/serine-rich sp 99.5 6.1E-14 2.1E-18 126.6 9.1 79 273-351 11-94 (95)
134 2cpj_A Non-POU domain-containi 99.5 7.5E-14 2.6E-18 127.6 9.7 81 273-354 11-91 (99)
135 2cqb_A Peptidyl-prolyl CIS-tra 99.5 5.1E-14 1.7E-18 129.1 8.6 83 273-355 8-95 (102)
136 1x5t_A Splicing factor 3B subu 99.5 4.3E-14 1.5E-18 128.1 8.0 80 361-440 4-89 (96)
137 2dnm_A SRP46 splicing factor; 99.5 7.7E-14 2.6E-18 128.3 9.6 80 360-439 11-95 (103)
138 3p5t_L Cleavage and polyadenyl 99.5 2.2E-14 7.5E-19 129.3 5.8 78 278-355 2-86 (90)
139 2kxn_B Transformer-2 protein h 99.5 8.5E-14 2.9E-18 134.6 10.3 82 272-353 41-127 (129)
140 2dgp_A Bruno-like 4, RNA bindi 99.5 7.8E-14 2.7E-18 128.8 9.6 84 272-355 8-99 (106)
141 2cpi_A CCR4-NOT transcription 99.5 9.6E-14 3.3E-18 130.1 10.1 80 359-438 12-102 (111)
142 2jvo_A Nucleolar protein 3; nu 99.5 6.9E-14 2.4E-18 131.0 9.1 81 357-440 26-106 (108)
143 1wi8_A EIF-4B, eukaryotic tran 99.5 1.3E-13 4.6E-18 127.1 10.8 82 272-355 10-97 (104)
144 2dgt_A RNA-binding protein 30; 99.5 8.3E-14 2.8E-18 125.7 9.2 81 272-355 5-85 (92)
145 2dgt_A RNA-binding protein 30; 99.5 1.5E-13 5E-18 124.1 10.8 78 359-439 7-84 (92)
146 4a8x_A RNA-binding protein wit 99.5 7.7E-14 2.6E-18 124.0 8.8 78 276-353 3-86 (88)
147 2ytc_A PRE-mRNA-splicing facto 99.5 1E-13 3.5E-18 122.7 9.6 76 359-435 9-85 (85)
148 2dnp_A RNA-binding protein 14; 99.5 1.4E-13 4.8E-18 123.7 10.6 78 359-439 6-83 (90)
149 1oo0_B CG8781-PA, drosophila Y 99.5 7.1E-14 2.4E-18 130.0 8.9 83 272-354 21-108 (110)
150 2cpj_A Non-POU domain-containi 99.5 8.9E-14 3.1E-18 127.1 9.4 79 359-438 12-90 (99)
151 2lkz_A RNA-binding protein 5; 99.5 3.3E-14 1.1E-18 130.9 6.4 76 361-436 8-94 (95)
152 2jvr_A Nucleolar protein 3; RN 99.5 7.2E-14 2.5E-18 132.4 8.9 78 361-438 27-106 (111)
153 2cpd_A Apobec-1 stimulating pr 99.5 2.4E-13 8.1E-18 124.3 12.1 78 359-439 12-91 (99)
154 2ywk_A Putative RNA-binding pr 99.5 6.8E-14 2.3E-18 126.5 8.3 79 272-350 11-93 (95)
155 2lkz_A RNA-binding protein 5; 99.5 3.6E-14 1.2E-18 130.6 6.6 79 273-351 5-94 (95)
156 2ywk_A Putative RNA-binding pr 99.5 1E-13 3.5E-18 125.3 9.5 78 359-436 13-94 (95)
157 1fjc_A Nucleolin RBD2, protein 99.5 5.3E-14 1.8E-18 127.6 7.5 82 273-354 12-93 (96)
158 2ytc_A PRE-mRNA-splicing facto 99.5 1E-13 3.6E-18 122.7 9.3 78 272-350 7-85 (85)
159 1u6f_A Tcubp1, RNA-binding pro 99.5 1.6E-13 5.5E-18 132.8 11.4 84 358-441 38-126 (139)
160 2dgp_A Bruno-like 4, RNA bindi 99.5 1.1E-13 3.9E-18 127.7 9.8 82 359-440 10-99 (106)
161 2cq4_A RNA binding motif prote 99.5 5.3E-14 1.8E-18 131.9 7.7 80 360-440 23-107 (114)
162 2la4_A Nuclear and cytoplasmic 99.5 6E-14 2E-18 128.6 7.9 76 361-437 26-101 (101)
163 1nu4_A U1A RNA binding domain; 99.5 6.9E-14 2.4E-18 126.9 8.2 82 273-354 4-91 (97)
164 1x4e_A RNA binding motif, sing 99.5 9.5E-14 3.3E-18 123.1 8.9 76 275-350 3-83 (85)
165 2err_A Ataxin-2-binding protei 99.5 8.2E-14 2.8E-18 130.3 8.9 82 357-438 24-108 (109)
166 2la4_A Nuclear and cytoplasmic 99.5 8.6E-14 2.9E-18 127.6 8.8 77 275-352 25-101 (101)
167 1wi8_A EIF-4B, eukaryotic tran 99.5 1.2E-13 4.2E-18 127.4 9.8 79 360-440 13-97 (104)
168 1whx_A Hypothetical protein ri 99.5 1.2E-13 4E-18 129.9 9.8 77 361-438 9-85 (111)
169 2do0_A HnRNP M, heterogeneous 99.5 2.5E-13 8.4E-18 127.0 11.9 82 273-354 11-96 (114)
170 2fy1_A RNA-binding motif prote 99.5 1.5E-13 5.2E-18 130.2 10.5 82 274-355 4-89 (116)
171 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4E-18 133.8 9.9 82 273-354 25-112 (127)
172 2dgv_A HnRNP M, heterogeneous 99.5 8.6E-14 3E-18 125.0 8.3 80 360-439 6-88 (92)
173 2div_A TRNA selenocysteine ass 99.5 1E-13 3.5E-18 126.4 8.8 80 274-353 6-95 (99)
174 2cpe_A RNA-binding protein EWS 99.5 1.1E-13 3.8E-18 129.4 9.3 84 272-355 10-106 (113)
175 2dh8_A DAZ-associated protein 99.5 1.2E-13 4.1E-18 127.5 9.4 84 272-356 11-99 (105)
176 1x4f_A Matrin 3; structural ge 99.5 9.3E-14 3.2E-18 132.0 8.7 81 274-355 22-105 (112)
177 2e5j_A Methenyltetrahydrofolat 99.5 1.4E-13 4.9E-18 125.4 9.7 81 273-353 15-95 (97)
178 2jrs_A RNA-binding protein 39; 99.5 1.4E-13 4.8E-18 128.8 9.8 80 359-438 23-107 (108)
179 2la6_A RNA-binding protein FUS 99.5 1.3E-13 4.6E-18 126.0 9.4 79 272-350 8-99 (99)
180 2dng_A Eukaryotic translation 99.5 2E-13 6.9E-18 125.7 10.6 82 272-355 10-96 (103)
181 2khc_A Testis-specific RNP-typ 99.5 1.3E-13 4.4E-18 129.9 9.5 79 272-350 35-118 (118)
182 2kxn_B Transformer-2 protein h 99.5 1.6E-13 5.4E-18 132.8 10.3 80 360-439 44-128 (129)
183 2xnq_A Nuclear polyadenylated 99.5 2.5E-13 8.7E-18 124.5 11.2 77 359-438 19-96 (97)
184 2cqd_A RNA-binding region cont 99.5 2.2E-13 7.4E-18 128.1 11.0 83 272-355 12-99 (116)
185 2wbr_A GW182, gawky, LD47780P; 99.5 7.2E-14 2.5E-18 127.2 7.4 73 276-349 6-78 (89)
186 1p1t_A Cleavage stimulation fa 99.5 5.1E-14 1.7E-18 129.4 6.4 82 360-441 6-92 (104)
187 2e5j_A Methenyltetrahydrofolat 99.5 1.3E-13 4.4E-18 125.8 9.1 79 359-438 16-95 (97)
188 3ex7_B RNA-binding protein 8A; 99.5 1.3E-13 4.4E-18 131.4 9.4 82 359-440 19-105 (126)
189 1fjc_A Nucleolin RBD2, protein 99.5 9.9E-14 3.4E-18 125.8 8.1 81 359-439 13-93 (96)
190 2fc9_A NCL protein; structure 99.5 1.6E-13 5.4E-18 125.8 9.5 83 273-355 11-94 (101)
191 1p1t_A Cleavage stimulation fa 99.5 4.8E-14 1.6E-18 129.6 5.9 81 274-354 5-90 (104)
192 2err_A Ataxin-2-binding protei 99.5 1E-13 3.4E-18 129.7 8.2 81 272-352 24-107 (109)
193 2khc_A Testis-specific RNP-typ 99.5 1.7E-13 5.8E-18 129.0 9.8 77 359-435 37-118 (118)
194 3ex7_B RNA-binding protein 8A; 99.4 1.4E-13 4.6E-18 131.2 9.2 84 272-355 17-105 (126)
195 2dgu_A Heterogeneous nuclear r 99.4 2E-13 6.7E-18 125.9 9.9 79 274-355 8-86 (103)
196 3ns6_A Eukaryotic translation 99.4 4.7E-14 1.6E-18 130.0 5.7 77 362-438 6-94 (100)
197 1u6f_A Tcubp1, RNA-binding pro 99.4 1.6E-13 5.3E-18 133.0 9.7 84 272-355 37-125 (139)
198 3ns6_A Eukaryotic translation 99.4 4.7E-14 1.6E-18 130.0 5.7 77 276-352 5-93 (100)
199 2cpi_A CCR4-NOT transcription 99.4 1.5E-13 5.1E-18 128.8 9.2 82 273-354 11-103 (111)
200 2dnp_A RNA-binding protein 14; 99.4 2E-13 6.7E-18 122.7 9.5 80 273-355 5-84 (90)
201 2dhg_A TRNA selenocysteine ass 99.4 9.9E-14 3.4E-18 127.6 7.6 82 360-441 7-94 (104)
202 1x4c_A Splicing factor, argini 99.4 2.8E-13 9.7E-18 126.2 10.7 81 273-355 11-96 (108)
203 2m2b_A RNA-binding protein 10; 99.4 1.4E-13 4.7E-18 132.8 8.9 83 272-355 18-111 (131)
204 2cpd_A Apobec-1 stimulating pr 99.4 3.9E-13 1.3E-17 122.9 11.4 80 273-355 11-92 (99)
205 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.6E-13 5.4E-18 126.2 8.8 79 273-353 15-99 (100)
206 2kvi_A Nuclear polyadenylated 99.4 1.4E-13 5E-18 125.4 8.3 80 273-355 6-86 (96)
207 2do0_A HnRNP M, heterogeneous 99.4 2.4E-13 8.1E-18 127.1 10.0 81 360-440 13-97 (114)
208 3ucg_A Polyadenylate-binding p 99.4 1.8E-13 6.2E-18 122.0 8.7 76 361-437 5-85 (89)
209 2cpx_A Hypothetical protein FL 99.4 2.3E-13 8E-18 127.4 9.8 83 273-355 21-108 (115)
210 3ulh_A THO complex subunit 4; 99.4 1.8E-13 6.3E-18 126.5 8.9 78 273-350 25-106 (107)
211 2krb_A Eukaryotic translation 99.4 1.5E-13 5.1E-18 121.3 8.0 71 277-347 1-81 (81)
212 2cqd_A RNA-binding region cont 99.4 2.4E-13 8.2E-18 127.8 9.9 81 358-439 13-98 (116)
213 2nlw_A Eukaryotic translation 99.4 2E-13 7E-18 126.7 9.3 81 273-353 11-101 (105)
214 2jvo_A Nucleolar protein 3; nu 99.4 1.7E-13 5.8E-18 128.4 8.7 80 272-354 26-105 (108)
215 2cpe_A RNA-binding protein EWS 99.4 2.1E-13 7.1E-18 127.5 9.2 82 359-440 12-106 (113)
216 2fy1_A RNA-binding motif prote 99.4 1.9E-13 6.5E-18 129.5 8.9 79 361-439 6-88 (116)
217 2xnq_A Nuclear polyadenylated 99.4 2.7E-13 9.3E-18 124.3 9.7 77 273-352 18-95 (97)
218 2a3j_A U1 small nuclear ribonu 99.4 2.7E-13 9.2E-18 131.3 10.1 82 360-441 27-114 (127)
219 2dgx_A KIAA0430 protein; RRM d 99.4 1.8E-13 6.1E-18 124.9 8.4 80 275-354 7-92 (96)
220 1x4g_A Nucleolysin TIAR; struc 99.4 2.9E-13 9.9E-18 126.0 9.9 82 273-355 21-102 (109)
221 1nu4_A U1A RNA binding domain; 99.4 2.1E-13 7.2E-18 123.7 8.8 81 360-440 6-92 (97)
222 1whx_A Hypothetical protein ri 99.4 1E-13 3.6E-18 130.3 7.0 77 275-352 8-84 (111)
223 2la6_A RNA-binding protein FUS 99.4 2.6E-13 8.7E-18 124.1 9.3 77 359-435 10-99 (99)
224 3p5t_L Cleavage and polyadenyl 99.4 4.7E-14 1.6E-18 127.1 4.3 77 363-439 2-85 (90)
225 2fc8_A NCL protein; structure 99.4 3.1E-13 1E-17 123.9 9.8 83 273-355 11-95 (102)
226 1x5o_A RNA binding motif, sing 99.4 4.9E-13 1.7E-17 125.2 11.4 80 273-352 21-112 (114)
227 2kt5_A RNA and export factor-b 99.4 6E-13 2.1E-17 126.7 12.2 80 359-438 32-115 (124)
228 2dng_A Eukaryotic translation 99.4 3.3E-13 1.1E-17 124.2 10.0 80 359-440 12-96 (103)
229 3ucg_A Polyadenylate-binding p 99.4 2E-13 7E-18 121.7 8.3 76 276-352 5-85 (89)
230 2cqh_A IGF-II mRNA-binding pro 99.4 1.2E-13 4.2E-18 124.7 6.9 79 360-440 6-86 (93)
231 3zzy_A Polypyrimidine tract-bi 99.4 2.9E-13 1E-17 131.8 9.9 76 363-438 29-107 (130)
232 2kvi_A Nuclear polyadenylated 99.4 1.8E-13 6.3E-18 124.7 7.9 77 360-439 8-85 (96)
233 2cqh_A IGF-II mRNA-binding pro 99.4 1.4E-13 4.7E-18 124.3 7.0 80 274-355 5-86 (93)
234 1x5p_A Negative elongation fac 99.4 6.6E-13 2.3E-17 121.1 11.5 78 360-440 13-90 (97)
235 1h2v_Z 20 kDa nuclear CAP bind 99.4 4E-13 1.4E-17 132.9 10.8 81 360-440 37-122 (156)
236 2jwn_A Embryonic polyadenylate 99.4 5.4E-14 1.8E-18 133.6 4.3 78 360-438 34-116 (124)
237 2dis_A Unnamed protein product 99.4 3.3E-13 1.1E-17 125.1 9.5 81 275-355 6-95 (109)
238 2jvr_A Nucleolar protein 3; RN 99.4 1.4E-13 4.8E-18 130.4 7.1 79 274-352 25-105 (111)
239 1x4f_A Matrin 3; structural ge 99.4 1.5E-13 5E-18 130.6 7.1 80 360-440 23-105 (112)
240 3ulh_A THO complex subunit 4; 99.4 3.8E-13 1.3E-17 124.3 9.7 76 360-435 27-106 (107)
241 3lqv_A PRE-mRNA branch site pr 99.4 3.1E-13 1.1E-17 126.7 9.1 80 361-440 7-88 (115)
242 2cqp_A RNA-binding protein 12; 99.4 1.9E-13 6.4E-18 124.4 7.4 80 273-352 11-95 (98)
243 2fc9_A NCL protein; structure 99.4 2.9E-13 9.9E-18 124.0 8.6 81 359-439 12-93 (101)
244 3s7r_A Heterogeneous nuclear r 99.4 2.8E-13 9.5E-18 120.6 8.2 76 273-349 7-87 (87)
245 2ek1_A RNA-binding protein 12; 99.4 1.1E-13 3.9E-18 125.0 5.8 77 274-350 12-93 (95)
246 2dis_A Unnamed protein product 99.4 3.4E-13 1.2E-17 125.0 9.2 81 360-440 6-95 (109)
247 2nlw_A Eukaryotic translation 99.4 4.2E-13 1.4E-17 124.5 9.7 79 360-438 13-101 (105)
248 1wf1_A RNA-binding protein RAL 99.4 4.3E-13 1.5E-17 125.0 9.8 77 274-353 24-101 (110)
249 1h2v_Z 20 kDa nuclear CAP bind 99.4 4.1E-13 1.4E-17 132.8 10.2 83 273-355 35-122 (156)
250 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.5E-13 5.2E-18 126.3 6.6 78 359-438 16-99 (100)
251 1x5p_A Negative elongation fac 99.4 7.8E-13 2.7E-17 120.6 11.2 80 273-355 11-90 (97)
252 1s79_A Lupus LA protein; RRM, 99.4 3.2E-13 1.1E-17 125.8 8.6 79 359-438 8-90 (103)
253 2dgw_A Probable RNA-binding pr 99.4 4E-13 1.4E-17 120.8 8.9 79 273-353 6-88 (91)
254 2fc8_A NCL protein; structure 99.4 5.7E-13 1.9E-17 122.1 10.1 83 358-440 11-95 (102)
255 1x4b_A Heterogeneous nuclear r 99.4 2.3E-13 7.9E-18 127.9 7.6 81 359-440 24-109 (116)
256 2cqg_A TDP-43, TAR DNA-binding 99.4 8.1E-13 2.8E-17 121.5 11.1 82 272-355 10-96 (103)
257 2e44_A Insulin-like growth fac 99.4 7.4E-13 2.5E-17 120.0 10.6 79 360-438 13-93 (96)
258 2ki2_A SS-DNA binding protein 99.4 1.1E-13 3.6E-18 124.1 4.8 77 278-355 2-83 (90)
259 1s79_A Lupus LA protein; RRM, 99.4 2.6E-13 8.9E-18 126.4 7.6 76 274-350 8-87 (103)
260 2kt5_A RNA and export factor-b 99.4 5E-13 1.7E-17 127.2 9.7 83 273-355 31-117 (124)
261 2rs2_A Musashi-1, RNA-binding 99.4 3.8E-13 1.3E-17 125.9 8.5 82 273-355 21-107 (109)
262 2rs2_A Musashi-1, RNA-binding 99.4 5.8E-13 2E-17 124.7 9.8 81 359-440 22-107 (109)
263 2mss_A Protein (musashi1); RNA 99.4 2.3E-13 7.8E-18 117.9 6.3 70 279-349 1-75 (75)
264 2cpx_A Hypothetical protein FL 99.4 4.2E-13 1.4E-17 125.6 8.6 81 360-440 23-108 (115)
265 1wg5_A Heterogeneous nuclear r 99.4 8E-13 2.7E-17 122.5 10.4 80 273-353 11-95 (104)
266 3d2w_A TAR DNA-binding protein 99.4 7.6E-13 2.6E-17 119.7 10.0 77 359-439 8-86 (89)
267 1wg1_A KIAA1579 protein, homol 99.4 3.7E-13 1.3E-17 120.7 7.8 76 361-438 4-79 (88)
268 3n9u_C Cleavage and polyadenyl 99.4 2.3E-13 7.9E-18 136.0 7.1 78 275-352 53-137 (156)
269 2dh8_A DAZ-associated protein 99.4 4.9E-13 1.7E-17 123.4 8.7 81 359-440 13-98 (105)
270 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 8.4E-13 2.9E-17 127.2 10.8 77 273-349 59-140 (140)
271 2div_A TRNA selenocysteine ass 99.4 3.3E-13 1.1E-17 123.0 7.5 79 360-438 7-95 (99)
272 3n9u_C Cleavage and polyadenyl 99.4 3.8E-13 1.3E-17 134.4 8.5 81 361-441 54-141 (156)
273 2cqp_A RNA-binding protein 12; 99.4 2.5E-13 8.5E-18 123.6 6.5 78 360-437 13-95 (98)
274 3s7r_A Heterogeneous nuclear r 99.4 7.2E-13 2.5E-17 118.0 9.3 75 359-434 8-87 (87)
275 1x5o_A RNA binding motif, sing 99.4 8.4E-13 2.9E-17 123.6 10.1 79 359-437 22-112 (114)
276 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.1E-12 3.9E-17 126.3 11.2 76 359-434 60-140 (140)
277 1fj7_A Nucleolin RBD1, protein 99.4 2.1E-13 7.3E-18 124.9 5.8 81 274-355 14-98 (101)
278 1x4e_A RNA binding motif, sing 99.4 1.6E-13 5.4E-18 121.7 4.7 76 361-436 4-84 (85)
279 1wg1_A KIAA1579 protein, homol 99.4 3.5E-13 1.2E-17 120.9 6.8 76 275-352 3-78 (88)
280 2mss_A Protein (musashi1); RNA 99.4 3.2E-13 1.1E-17 117.0 6.1 70 364-434 1-75 (75)
281 1sjr_A Polypyrimidine tract-bi 99.4 7.4E-13 2.5E-17 133.6 9.7 77 362-438 46-125 (164)
282 3beg_B Splicing factor, argini 99.4 6.5E-13 2.2E-17 125.5 8.7 76 361-438 15-95 (115)
283 2e5i_A Heterogeneous nuclear r 99.4 1.1E-12 3.8E-17 126.7 10.3 74 364-438 27-103 (124)
284 2ek1_A RNA-binding protein 12; 99.4 2.4E-13 8E-18 122.9 5.2 76 361-436 14-94 (95)
285 2e5g_A U6 snRNA-specific termi 99.4 1.9E-12 6.6E-17 117.3 11.2 80 275-355 6-85 (94)
286 2ki2_A SS-DNA binding protein 99.4 1.7E-13 5.7E-18 122.8 4.1 75 363-438 2-81 (90)
287 1x4b_A Heterogeneous nuclear r 99.4 5.7E-13 1.9E-17 125.2 7.9 81 274-355 24-109 (116)
288 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.5E-13 8.7E-18 117.8 5.1 71 278-349 1-76 (77)
289 2cq4_A RNA binding motif prote 99.4 2.4E-13 8.3E-18 127.4 5.0 78 274-352 22-104 (114)
290 2cq2_A Hypothetical protein LO 99.4 7.6E-13 2.6E-17 126.1 8.5 80 273-353 21-107 (114)
291 2e44_A Insulin-like growth fac 99.4 1.5E-12 5.1E-17 118.0 10.0 80 274-353 12-93 (96)
292 2cqg_A TDP-43, TAR DNA-binding 99.4 2.2E-12 7.4E-17 118.6 11.0 79 359-439 12-95 (103)
293 1fj7_A Nucleolin RBD1, protein 99.4 2.9E-13 1E-17 124.0 5.1 79 360-440 15-98 (101)
294 1rk8_A CG8781-PA, CG8781-PA pr 99.4 8.5E-13 2.9E-17 132.1 8.9 85 271-355 66-155 (165)
295 2m2b_A RNA-binding protein 10; 99.4 3.4E-13 1.2E-17 130.1 5.7 79 359-438 20-109 (131)
296 2cq2_A Hypothetical protein LO 99.4 9.3E-13 3.2E-17 125.5 8.6 78 360-438 23-107 (114)
297 2krb_A Eukaryotic translation 99.4 4.8E-13 1.7E-17 118.0 6.1 69 363-431 2-80 (81)
298 2dgw_A Probable RNA-binding pr 99.4 1.1E-12 3.6E-17 118.0 8.3 77 360-438 8-88 (91)
299 2jwn_A Embryonic polyadenylate 99.4 9.7E-13 3.3E-17 124.9 8.4 78 276-354 35-117 (124)
300 3zzy_A Polypyrimidine tract-bi 99.4 1.4E-12 4.9E-17 126.9 9.6 80 276-355 27-109 (130)
301 2e5g_A U6 snRNA-specific termi 99.4 1.5E-12 5E-17 118.1 8.8 78 361-439 7-84 (94)
302 2cpy_A RNA-binding protein 12; 99.4 5.3E-13 1.8E-17 125.7 6.0 81 360-441 13-98 (114)
303 1wel_A RNA-binding protein 12; 99.3 4.1E-13 1.4E-17 128.1 5.2 79 273-352 21-104 (124)
304 1uaw_A Mouse-musashi-1; RNP-ty 99.3 4.8E-13 1.6E-17 116.1 5.0 71 363-434 1-76 (77)
305 2diu_A KIAA0430 protein; struc 99.3 1.7E-12 5.7E-17 119.5 8.7 76 275-355 6-87 (96)
306 3egn_A RNA-binding protein 40; 99.3 1.5E-12 5.1E-17 126.9 8.8 82 274-355 42-133 (143)
307 1wg5_A Heterogeneous nuclear r 99.3 1.9E-12 6.5E-17 119.9 8.9 79 360-439 13-96 (104)
308 1wez_A HnRNP H', FTP-3, hetero 99.3 1.6E-12 5.5E-17 120.6 8.2 79 273-353 11-93 (102)
309 2cpy_A RNA-binding protein 12; 99.3 5.5E-13 1.9E-17 125.6 5.0 80 273-353 11-95 (114)
310 2lcw_A RNA-binding protein FUS 99.0 1.1E-13 3.6E-18 130.4 0.0 83 273-355 3-98 (116)
311 3d2w_A TAR DNA-binding protein 99.3 1.9E-12 6.3E-17 117.2 8.2 78 273-354 7-86 (89)
312 1sjr_A Polypyrimidine tract-bi 99.3 2.6E-12 8.9E-17 129.6 10.1 81 275-355 44-127 (164)
313 2hgl_A HNRPF protein, heteroge 99.3 6.6E-13 2.2E-17 130.1 5.2 80 360-440 42-128 (136)
314 1iqt_A AUF1, heterogeneous nuc 99.3 7.3E-13 2.5E-17 114.5 4.8 70 279-349 1-75 (75)
315 1wf0_A TDP-43, TAR DNA-binding 99.3 7.9E-13 2.7E-17 118.3 5.1 78 361-440 4-81 (88)
316 2hzc_A Splicing factor U2AF 65 99.3 3.3E-12 1.1E-16 113.3 9.0 72 360-433 4-86 (87)
317 2db1_A Heterogeneous nuclear r 99.3 7.5E-13 2.6E-17 125.7 5.2 79 360-439 15-100 (118)
318 3beg_B Splicing factor, argini 99.3 2.1E-12 7.3E-17 121.9 8.2 71 275-347 14-84 (115)
319 2xs2_A Deleted in azoospermia- 99.3 4.8E-13 1.6E-17 122.8 3.6 81 273-355 5-89 (102)
320 3egn_A RNA-binding protein 40; 99.3 3E-12 1E-16 124.8 9.3 82 360-441 43-134 (143)
321 2hzc_A Splicing factor U2AF 65 99.3 1.8E-12 6.2E-17 115.0 7.1 72 275-348 4-86 (87)
322 2lmi_A GRSF-1, G-rich sequence 99.3 1.2E-12 4.3E-17 121.8 6.1 79 273-352 7-92 (107)
323 1wf0_A TDP-43, TAR DNA-binding 99.3 1.3E-12 4.5E-17 116.8 5.9 79 275-355 3-81 (88)
324 2db1_A Heterogeneous nuclear r 99.3 8E-13 2.8E-17 125.5 4.7 78 274-352 14-98 (118)
325 3u1l_A PRE-mRNA-splicing facto 99.3 4.1E-12 1.4E-16 135.6 10.6 105 335-440 107-232 (240)
326 2lcw_A RNA-binding protein FUS 99.0 1.9E-13 6.7E-18 128.6 0.0 81 360-440 5-98 (116)
327 2e5i_A Heterogeneous nuclear r 99.3 4.3E-12 1.5E-16 122.6 9.2 76 278-354 26-104 (124)
328 2lmi_A GRSF-1, G-rich sequence 99.3 7.8E-13 2.7E-17 123.2 3.8 81 360-441 9-96 (107)
329 2diu_A KIAA0430 protein; struc 99.3 4.2E-12 1.4E-16 116.8 8.4 71 363-438 10-85 (96)
330 3q2s_C Cleavage and polyadenyl 99.3 1.6E-12 5.6E-17 137.5 6.5 76 276-351 67-149 (229)
331 1wel_A RNA-binding protein 12; 99.3 6.8E-13 2.3E-17 126.6 3.2 81 360-441 23-108 (124)
332 2bz2_A Negative elongation fac 99.3 3.6E-12 1.2E-16 121.9 8.2 78 360-440 37-114 (121)
333 2hgn_A Heterogeneous nuclear r 99.3 8.8E-13 3E-17 129.7 4.0 120 315-439 2-125 (139)
334 2voo_A Lupus LA protein; RNA-b 99.3 7.1E-12 2.4E-16 129.3 10.6 114 323-437 63-187 (193)
335 2dnn_A RNA-binding protein 12; 99.3 4.5E-12 1.5E-16 119.5 8.3 75 361-437 15-93 (109)
336 2hgl_A HNRPF protein, heteroge 99.3 1.4E-12 4.9E-17 127.7 5.0 78 273-351 40-124 (136)
337 2f3j_A RNA and export factor b 99.3 4.2E-12 1.4E-16 129.3 8.5 80 273-352 84-167 (177)
338 2bz2_A Negative elongation fac 99.3 4.7E-12 1.6E-16 121.2 8.3 79 273-354 35-113 (121)
339 1iqt_A AUF1, heterogeneous nuc 99.3 1.4E-12 4.7E-17 112.8 4.1 70 364-434 1-75 (75)
340 3q2s_C Cleavage and polyadenyl 99.3 1.7E-12 5.8E-17 137.4 5.5 80 361-440 67-153 (229)
341 2xs2_A Deleted in azoospermia- 99.3 2.2E-12 7.5E-17 118.4 5.2 79 359-439 6-88 (102)
342 1wez_A HnRNP H', FTP-3, hetero 99.3 3.3E-12 1.1E-16 118.5 6.2 77 360-438 13-93 (102)
343 2hgn_A Heterogeneous nuclear r 99.3 2.9E-12 1E-16 126.0 5.7 80 273-354 42-125 (139)
344 2f3j_A RNA and export factor b 99.3 8E-12 2.7E-16 127.2 8.7 79 360-438 86-168 (177)
345 2dnn_A RNA-binding protein 12; 99.3 5.3E-12 1.8E-16 119.0 6.8 75 275-351 14-92 (109)
346 2hgm_A HNRPF protein, heteroge 99.2 8.4E-12 2.9E-16 120.8 7.2 77 273-351 38-120 (126)
347 2pe8_A Splicing factor 45; RRM 99.2 3.2E-11 1.1E-15 112.9 10.3 77 360-436 6-93 (105)
348 2dha_A FLJ20171 protein; RRM d 99.2 3.9E-12 1.3E-16 122.6 4.1 76 275-351 21-104 (123)
349 2dnl_A Cytoplasmic polyadenyla 99.2 2.1E-11 7.1E-16 114.7 8.4 72 275-349 6-85 (114)
350 3u1l_A PRE-mRNA-splicing facto 99.2 1.4E-11 4.7E-16 131.6 8.0 81 274-355 131-232 (240)
351 2hgm_A HNRPF protein, heteroge 99.2 1.1E-11 3.9E-16 119.9 6.2 77 360-438 40-122 (126)
352 2dit_A HIV TAT specific factor 99.2 4.9E-11 1.7E-15 112.0 10.4 80 359-438 12-103 (112)
353 2dit_A HIV TAT specific factor 99.2 5.6E-11 1.9E-15 111.5 10.8 82 273-354 11-104 (112)
354 2dha_A FLJ20171 protein; RRM d 99.2 4.2E-12 1.4E-16 122.3 3.0 81 361-442 22-110 (123)
355 3pgw_S U1-70K; protein-RNA com 99.2 2.7E-11 9.1E-16 139.8 9.0 80 274-353 99-183 (437)
356 2dnl_A Cytoplasmic polyadenyla 99.2 4.5E-11 1.5E-15 112.4 8.6 78 361-441 7-92 (114)
357 2pe8_A Splicing factor 45; RRM 99.1 8.8E-11 3E-15 109.9 8.9 77 275-351 6-93 (105)
358 3v4m_A Splicing factor U2AF 65 99.1 1E-10 3.5E-15 109.4 8.9 78 360-437 3-97 (105)
359 2voo_A Lupus LA protein; RNA-b 99.1 1.3E-10 4.5E-15 119.7 8.2 75 276-351 108-186 (193)
360 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.6E-10 8.8E-15 106.1 8.0 66 372-439 27-92 (100)
361 2j8a_A Histone-lysine N-methyl 99.0 8.6E-11 2.9E-15 114.0 4.6 73 278-350 3-94 (136)
362 1jmt_A Splicing factor U2AF 35 99.0 1.3E-10 4.4E-15 108.4 4.3 68 367-434 20-103 (104)
363 2j8a_A Histone-lysine N-methyl 99.0 2E-10 6.8E-15 111.5 5.4 79 363-441 3-100 (136)
364 3ue2_A Poly(U)-binding-splicin 99.0 5.7E-10 2E-14 106.7 8.3 76 361-436 19-108 (118)
365 3v4m_A Splicing factor U2AF 65 99.0 5.1E-10 1.7E-14 104.6 7.8 77 275-351 3-96 (105)
366 3s6e_A RNA-binding protein 39; 99.0 9.6E-10 3.3E-14 104.6 9.0 79 360-438 5-94 (114)
367 3tht_A Alkylated DNA repair pr 99.0 7.1E-10 2.4E-14 124.1 9.3 76 359-435 15-97 (345)
368 2d9o_A DNAJ (HSP40) homolog, s 99.0 2.2E-09 7.4E-14 99.9 10.9 66 287-354 27-92 (100)
369 3tht_A Alkylated DNA repair pr 99.0 6.8E-10 2.3E-14 124.3 8.1 76 273-349 14-96 (345)
370 1jmt_A Splicing factor U2AF 35 98.9 3.4E-10 1.2E-14 105.6 3.1 68 282-349 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 98.8 4.8E-09 1.7E-13 100.3 7.6 76 275-350 18-107 (118)
372 1uw4_A UPF3X; nonsense mediate 98.8 8.2E-09 2.8E-13 94.5 8.7 85 813-899 2-89 (91)
373 3s6e_A RNA-binding protein 39; 98.8 1E-08 3.4E-13 97.6 8.2 76 275-350 5-91 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.7 3.1E-08 1.1E-12 90.5 8.7 74 360-437 5-86 (91)
375 1owx_A Lupus LA protein, SS-B, 98.6 4.7E-08 1.6E-12 94.0 8.1 81 360-441 16-100 (121)
376 2l08_A Regulator of nonsense t 98.6 1.5E-08 5.2E-13 93.5 3.7 84 813-898 10-96 (97)
377 1ufw_A Synaptojanin 2; RNP dom 98.4 2.3E-07 7.8E-12 85.2 6.2 73 360-436 13-94 (95)
378 1owx_A Lupus LA protein, SS-B, 98.4 6.4E-07 2.2E-11 86.1 9.1 75 273-348 14-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.4 3.5E-07 1.2E-11 83.5 6.3 74 275-352 5-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.3 6.7E-07 2.3E-11 93.0 7.6 64 373-436 140-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.1 3.7E-06 1.3E-10 87.4 7.1 62 289-350 141-211 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.1 3.5E-06 1.2E-10 77.5 5.6 72 275-350 13-93 (95)
383 2l9w_A U4/U6 snRNA-associated- 98.0 1.2E-05 4.2E-10 75.5 8.5 72 361-433 20-96 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.3 0.0011 3.9E-08 61.7 10.7 89 275-375 6-99 (104)
385 2l9w_A U4/U6 snRNA-associated- 97.1 0.00058 2E-08 64.3 6.5 71 276-347 20-95 (117)
386 2dhx_A Poly (ADP-ribose) polym 96.9 0.0029 9.8E-08 59.0 9.0 77 361-441 7-88 (104)
387 1wey_A Calcipressin 1; structu 96.8 0.0014 4.8E-08 61.2 5.7 76 362-438 5-85 (104)
388 1wwh_A Nucleoporin 35, nucleop 96.5 0.0074 2.5E-07 57.7 8.8 76 360-438 22-98 (119)
389 1wey_A Calcipressin 1; structu 96.4 0.0036 1.2E-07 58.5 5.4 76 277-353 5-85 (104)
390 1uw4_A UPF3X; nonsense mediate 95.2 0.042 1.4E-06 50.2 7.4 65 278-342 2-73 (91)
391 1whv_A Poly(A)-specific ribonu 94.5 0.083 2.8E-06 48.8 7.4 56 276-335 15-70 (100)
392 3p3d_A Nucleoporin 53; structu 94.3 0.032 1.1E-06 54.1 4.3 73 362-436 7-98 (132)
393 1wwh_A Nucleoporin 35, nucleop 93.7 0.12 4.2E-06 49.3 7.0 70 276-348 23-93 (119)
394 3ctr_A Poly(A)-specific ribonu 93.4 0.075 2.6E-06 49.2 4.7 54 278-335 7-60 (101)
395 3pq1_A Poly(A) RNA polymerase; 92.9 0.043 1.5E-06 63.6 3.0 56 276-332 52-107 (464)
396 3pq1_A Poly(A) RNA polymerase; 92.3 0.052 1.8E-06 63.0 2.6 56 361-417 52-107 (464)
397 1whv_A Poly(A)-specific ribonu 92.0 0.22 7.6E-06 46.0 5.9 54 363-420 17-70 (100)
398 3ctr_A Poly(A)-specific ribonu 91.8 0.15 5.1E-06 47.3 4.5 53 364-420 8-60 (101)
399 2l08_A Regulator of nonsense t 91.6 0.25 8.4E-06 45.7 5.8 68 275-342 7-81 (97)
400 3p3d_A Nucleoporin 53; structu 87.4 0.42 1.4E-05 46.4 4.1 72 276-349 6-96 (132)
401 3d45_A Poly(A)-specific ribonu 69.8 10 0.00035 44.4 8.7 56 277-336 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 50.2 23 0.00079 41.4 7.1 55 363-421 441-495 (507)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.9e-32 Score=294.84 Aligned_cols=235 Identities=15% Similarity=0.180 Sum_probs=198.4
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
..|||+||+. ++.+.|.+. |... | |+... -+.++|||||.|. +.++|+ +
T Consensus 23 ~~l~V~nLp~~~te~~l~~~--------------F~~~--------G-i~~~~----~~~~~g~afV~f~-~~~~A~--~ 72 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDL--------------LSDY--------E-LKYCF----VDKYKGTAFVTLL-NGEQAE--A 72 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHH--------------TTTS--------C-EEEEE----EETTTTEEEEEES-SHHHHH--H
T ss_pred CEEEEeCCCCCCCHHHHHHH--------------HHHc--------C-CEEEE----EecCCCEEEEEeC-CHHHHH--H
Confidence 5799999998 888888877 7443 3 22211 1568999999955 677777 7
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|+..++|..+. ++.+.+.. ..+.++|||+|||.++|+++|+++|++||.|..+
T Consensus 73 A~~~l~~~~~~-g~~i~v~~--------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~ 125 (284)
T 3smz_A 73 AINAFHQSRLR-ERELSVQL--------------------------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERC 125 (284)
T ss_dssp HHHHHTTCEET-TEECEEEE--------------------------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred HHHHcCCCeeC-CeEEEEEe--------------------------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEE
Confidence 99999999997 44433321 1245899999999999999999999999999998
Q ss_pred Ee-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCC-CHHHHHH
Q 001976 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV-STEELHQ 381 (987)
Q Consensus 308 ki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v-TeedLre 381 (987)
++ +++++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.++.... .....++|||+|||..+ ++++|++
T Consensus 126 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~ 204 (284)
T 3smz_A 126 FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCR 204 (284)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHH
T ss_pred EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHH
Confidence 75 56789999999999999999999999999999999999998765442 23456799999999995 9999999
Q ss_pred HhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 001976 382 IFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 382 lFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rr 441 (987)
+|++||.|.+|++..+ ++|+|||+|.+.++|.+|++.|||..|+|++|+|.|+.++..++
T Consensus 205 ~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 205 ALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 9999999999988654 57899999999999999999999999999999999999998766
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.2e-31 Score=289.70 Aligned_cols=236 Identities=15% Similarity=0.199 Sum_probs=189.4
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
....|||+||+. ++.+.|.+. |....++....+ ..+. .+ ++|||||.|. +.++|+
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~--------------F~~~G~i~~v~i---~~~~----~~-~~g~afV~f~-~~~~A~- 95 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKY--------------FKHCGPIIHVDV---ADSL----KK-NFRFARIEFA-RYDGAL- 95 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHH--------------HGGGSCEEEEEE---EECT----TS-SSEEEEEEES-SHHHHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHH--------------HHhcCCeEEEEE---EECC----CC-CcEEEEEEEC-CHHHHH-
Confidence 456799999998 888888887 854444332211 1122 22 6899999965 677777
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccC-cE
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG-DI 304 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG-~I 304 (987)
+|++ ++|..+. ++.+.+.. ...++|||+|||.++++++|+++|++|| .|
T Consensus 96 -~A~~-~~~~~~~-g~~i~v~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i 145 (292)
T 2ghp_A 96 -AAIT-KTHKVVG-QNEIIVSH---------------------------LTECTLWMTNFPPSYTQRNIRDLLQDINVVA 145 (292)
T ss_dssp -HHHT-TTTCEET-TEECEEEE---------------------------CCSCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred -HHHH-hCCcEeC-CcEEEEEE---------------------------CCCCEEEEECCCCCCCHHHHHHHHHHhCCCe
Confidence 6884 8999997 44433221 1478999999999999999999999999 99
Q ss_pred EEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc---ccccccceeeecCCCC-CCH
Q 001976 305 RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE---KDANQGTLVVFNLDSS-VST 376 (987)
Q Consensus 305 ~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~---~~~~~~tLfV~NLp~~-vTe 376 (987)
..|++ .+.++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.++..... .....++|||+|||.. +++
T Consensus 146 ~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~ 225 (292)
T 2ghp_A 146 LSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDE 225 (292)
T ss_dssp CEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCH
T ss_pred EEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCH
Confidence 99976 356899999999999999999999999999999999999987755432 2345679999999999 999
Q ss_pred HHHHHHhhccCCEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 377 EELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 377 edLrelFs~fG~I~~Vri~~~------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|+ .|||..|+|++|+|.|++++
T Consensus 226 ~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 226 NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999999999998753 4689999999999999999 99999999999999999986
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=6.5e-30 Score=265.80 Aligned_cols=166 Identities=19% Similarity=0.343 Sum_probs=148.1
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..+.++|||+|||+++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 357799999999999999999999999999999976 577899999999999999999999999999999999998
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
+...... ......+|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++||+.|||..|+
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 8654322 2234568999999999999999999999999999998643 5789999999999999999999999999
Q ss_pred CcEEEEEeccCCchhh
Q 001976 426 GKQIKLEASRPGGARR 441 (987)
Q Consensus 426 Gr~LkV~~a~~k~~Rr 441 (987)
|++|+|.+++++.+++
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999877654
No 4
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.2e-28 Score=265.42 Aligned_cols=195 Identities=16% Similarity=0.285 Sum_probs=172.4
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
.+.++|||+|||.++|+++|+++|++|| |..+++ ++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3579999999999999999999999999 999998 8899999999999999999999999999999999999853
Q ss_pred CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 001976 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (987)
Q Consensus 355 ~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~L 429 (987)
...+|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|++.|||..+.|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999987643 47899999999999999999999999999999
Q ss_pred EEEeccCCchhhccchhhhhccCCccc-cCCCCCC-Ccccc----ccccceEEE---ecCCCCcccc
Q 001976 430 KLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDL-SSGQM----VSSGVITST---CMDNGSIQVL 487 (987)
Q Consensus 430 kV~~a~~k~~Rrl~qq~eq~q~e~nly-knLp~sv-t~e~L----~~fG~I~S~---~~~nG~~rgf 487 (987)
+|.++.++..+. ......+|| +|||.++ ++++| +.||.|.++ +..+|.++||
T Consensus 168 ~v~~a~~~~~~~------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~ 228 (284)
T 3smz_A 168 YVHWTDAGQLTP------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGF 228 (284)
T ss_dssp EEEECCGGGCCT------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEE
T ss_pred EEEECCCCCCCc------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccE
Confidence 999998754321 122346788 9999996 88888 899999888 4556777775
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=240.75 Aligned_cols=157 Identities=19% Similarity=0.333 Sum_probs=143.3
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~ 353 (987)
|+|||+|||.++|+++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999976 36678999999999999999999999999999999999987665
Q ss_pred CCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 001976 354 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (987)
Q Consensus 354 ~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~ 428 (987)
.. ......+|||+|||..+++++|+++|++||.|..+++..+ ++|||||+|.+.++|.+|++.|||..++|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 43 3345679999999999999999999999999999988643 4789999999999999999999999999999
Q ss_pred EEEEeccC
Q 001976 429 IKLEASRP 436 (987)
Q Consensus 429 LkV~~a~~ 436 (987)
|+|.|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999874
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=4.6e-28 Score=238.93 Aligned_cols=155 Identities=23% Similarity=0.425 Sum_probs=142.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
+.++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999975 46688999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
++... ....+|||+|||..+++++|+++|++||.|..+++..+ ++|||||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSST----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCccc----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 76533 45679999999999999999999999999999988654 3689999999999999999999999998
Q ss_pred C--cEEEEEec
Q 001976 426 G--KQIKLEAS 434 (987)
Q Consensus 426 G--r~LkV~~a 434 (987)
| ++|+|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 7
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=3.2e-28 Score=263.04 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=166.0
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec---ccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit---gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.....+.++|||+|||.++|+++|+++|++||+|..|++. ..++|||||+|.+.++|++|++ +++..+.|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456778999999999999999999999999999999872 2258999999999999999995 99999999999998
Q ss_pred ccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCC
Q 001976 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 348 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG-~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
++ ..++|||+|||..+++++|+++|++|| .|..|++..+ ++|||||+|.+.++|.+|++.|||.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 357999999999999999999999999 9999998753 5899999999999999999999999
Q ss_pred eeCCcEEEEEeccCCchhhccchhhhhccCCccc-cCCCCC-CCcccc----ccccceEEEecC---C--CCcccc
Q 001976 423 DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDD-LSSGQM----VSSGVITSTCMD---N--GSIQVL 487 (987)
Q Consensus 423 ~I~Gr~LkV~~a~~k~~Rrl~qq~eq~q~e~nly-knLp~s-vt~e~L----~~fG~I~S~~~~---n--G~~rgf 487 (987)
.+.|++|+|.++.++...... .........|| +|||.+ +++++| ..||.|..+... + |..+||
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~ 256 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 256 (292)
T ss_dssp EETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEE
T ss_pred EeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceE
Confidence 999999999999886533211 11223347888 999999 999999 999999999443 2 666665
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=5.8e-28 Score=237.17 Aligned_cols=155 Identities=25% Similarity=0.431 Sum_probs=141.4
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
++++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3689999999999999999999999999999976 56778999999999999999999999999999999999997
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
+... .....+|||+|||..+++++|+++|++||.|..+++..+ ++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6543 345678999999999999999999999999999998654 3789999999999999999999999999
Q ss_pred CcE--EEEEec
Q 001976 426 GKQ--IKLEAS 434 (987)
Q Consensus 426 Gr~--LkV~~a 434 (987)
|+. |+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888886
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=8.9e-28 Score=246.69 Aligned_cols=165 Identities=18% Similarity=0.365 Sum_probs=146.2
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999987 5678999999999999999999999999999999999887
Q ss_pred CCCCCCC-------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHH
Q 001976 350 IPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 350 ~pk~~~~-------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~ 417 (987)
....... ......++|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6654321 11234579999999999999999999999999999998754 37899999999999999999
Q ss_pred HhCCCeeCCcEEEEEeccCCch
Q 001976 418 TLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 418 ~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
.|||..|+|++|+|.|+.++..
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSS
T ss_pred HccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999998754
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=9.3e-28 Score=242.91 Aligned_cols=168 Identities=18% Similarity=0.332 Sum_probs=141.2
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 35567899999999999999999999999999999976 466899999999999999999974 999999999999
Q ss_pred cccCCCCCCC--cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHh
Q 001976 347 HYSIPKDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 347 ~~a~pk~~~~--~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~L 419 (987)
.++.++.... ......++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9987665432 22335579999999999999999999999999999988643 478999999999999999985
Q ss_pred CCCeeCCcEEEEEeccCCchhh
Q 001976 420 NRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 420 NG~~I~Gr~LkV~~a~~k~~Rr 441 (987)
+|..|+|+.|.|.++.++.+..
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999987654
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2e-27 Score=255.59 Aligned_cols=164 Identities=24% Similarity=0.454 Sum_probs=147.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHH----HhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
+..+.++|||+|||.++|+++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999977 89999999999986 6788999999999999999999999999999999999
Q ss_pred cccCCCCCCC----------------------------------------------------------------------
Q 001976 347 HYSIPKDNPS---------------------------------------------------------------------- 356 (987)
Q Consensus 347 ~~a~pk~~~~---------------------------------------------------------------------- 356 (987)
.++..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9886644200
Q ss_pred -------------------------------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCC
Q 001976 357 -------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399 (987)
Q Consensus 357 -------------------------------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~sk 399 (987)
......++|||+|||..+++++|+++|++||.|.+|++..+.+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0112346899999999999999999999999999999998878
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEeccC
Q 001976 400 NHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRP 436 (987)
Q Consensus 400 G~aFVeF~d~edA~kAL~~LNG~~I~-Gr~LkV~~a~~ 436 (987)
|||||+|.+.++|.+|++.|||..|. |++|+|.|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999873
No 12
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=2.6e-27 Score=248.79 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=147.9
Q ss_pred CCCCcEEEEccCCC-CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 274 EHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 274 e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
..+.++|||+|||. ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45789999999999 99999999999999999999986666899999999999999999999999999999999998755
Q ss_pred CCCCcc-------------------------------cccccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCCc
Q 001976 353 DNPSEK-------------------------------DANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKHN 400 (987)
Q Consensus 353 ~~~~~~-------------------------------~~~~~tLfV~NLp~~vTeedLrelFs~fG-~I~~Vri~~~skG 400 (987)
.....+ ..+.++|||+|||..+++++|+++|++|| .|..|++.++.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211000 12357899999999999999999999999 9999999887899
Q ss_pred EEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEeccCC
Q 001976 401 HKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 437 (987)
Q Consensus 401 ~aFVeF~d~edA~kAL~~LNG~~I~-Gr~LkV~~a~~k 437 (987)
||||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999874
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=6.3e-28 Score=240.66 Aligned_cols=162 Identities=20% Similarity=0.278 Sum_probs=144.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE----EecccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV----kitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
...+.++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|+ +|+|..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 45678999999999999999999999999976552 125789999999999999999999 5999999999999999
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 001976 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (987)
Q Consensus 349 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~ 428 (987)
+.++... .....++|||+|||..+++++|+++|++||.|..+...+.++|||||+|.+.++|.+|++.|||..|.|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9876543 33466799999999999999999999999999988444567899999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001976 429 IKLEASRPG 437 (987)
Q Consensus 429 LkV~~a~~k 437 (987)
|+|.|+.++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999886
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.7e-27 Score=234.68 Aligned_cols=153 Identities=16% Similarity=0.346 Sum_probs=140.1
Q ss_pred CCcEEEEccCCCCCChHHHHHhhccc----C-------cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~f----G-------~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L 344 (987)
+.++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .+++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 57999999999999999999999999 6 7888877 678999999999999999999 899999999999
Q ss_pred cccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHh
Q 001976 345 DIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 419 (987)
Q Consensus 345 ~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~L 419 (987)
.|.++.+.... ....+|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.|
T Consensus 81 ~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99987655332 34679999999999999999999999999999998654 3789999999999999999999
Q ss_pred CCCeeCCcEEEEEec
Q 001976 420 NRSDVAGKQIKLEAS 434 (987)
Q Consensus 420 NG~~I~Gr~LkV~~a 434 (987)
||..++|++|+|.||
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999997
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2e-27 Score=242.25 Aligned_cols=162 Identities=22% Similarity=0.313 Sum_probs=146.4
Q ss_pred CCcEEEEccCCC-CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 276 PSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 276 ~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
.+++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 358999999999 9999999999999999999998666689999999999999999999999999999999998875421
Q ss_pred CCc-------------------------------ccccccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCCcEE
Q 001976 355 PSE-------------------------------KDANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKHNHK 402 (987)
Q Consensus 355 ~~~-------------------------------~~~~~~tLfV~NLp~~vTeedLrelFs~fG-~I~~Vri~~~skG~a 402 (987)
... ...+.++|||+|||..+++++|+++|++|| .|..|++.++.+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 100 012367899999999999999999999999 999999988789999
Q ss_pred EEEECCHHHHHHHHHHhCCCeeC-CcEEEEEeccCC
Q 001976 403 FIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 437 (987)
Q Consensus 403 FVeF~d~edA~kAL~~LNG~~I~-Gr~LkV~~a~~k 437 (987)
||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1e-27 Score=236.68 Aligned_cols=156 Identities=18% Similarity=0.393 Sum_probs=140.9
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
++++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999986 577899999999999999999984 678999999999886
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 351 pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
++. .....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++ ++|..++
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 543 2234679999999999999999999999999999998653 57899999999999999998 9999999
Q ss_pred CcEEEEEeccCCc
Q 001976 426 GKQIKLEASRPGG 438 (987)
Q Consensus 426 Gr~LkV~~a~~k~ 438 (987)
|++|+|.|+.++.
T Consensus 155 g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 155 DRKIEIKRAEPRH 167 (167)
T ss_dssp SSCEEEEECCCCC
T ss_pred CeEEEEeecCCCC
Confidence 9999999999863
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=6e-27 Score=243.86 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=139.1
Q ss_pred CCcEEEEccCC-CCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 276 PSRTLFVRNIN-SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 276 ~srtLfVgNLP-~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
++++|||+||| .++|+++|+++|++||+|.+|++....+|||||+|.+.++|++|++.|||..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998666799999999999999999999999999999999999864321
Q ss_pred CCc---------------------------------ccccccceeeecCCCCCCHHHHHHHhhccCCE--EEEEEcCC--
Q 001976 355 PSE---------------------------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEI--REIRDTQH-- 397 (987)
Q Consensus 355 ~~~---------------------------------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I--~~Vri~~~-- 397 (987)
.+. ...+.++|||+|||+++++++|+++|++||.| .+|+++.+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 00124579999999999999999999999999 88998764
Q ss_pred -CCcEEEEEECCHHHHHHHHHHhCCCeeCCc----EEEEEec
Q 001976 398 -KHNHKFIEFYDIRAAETALRTLNRSDVAGK----QIKLEAS 434 (987)
Q Consensus 398 -skG~aFVeF~d~edA~kAL~~LNG~~I~Gr----~LkV~~a 434 (987)
++|+|||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 358999999999999999999999999886 6777665
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=4e-27 Score=238.63 Aligned_cols=162 Identities=15% Similarity=0.322 Sum_probs=143.7
Q ss_pred CCcEEEEccCCCCCChHHHHHhhccc----C-------cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~f----G-------~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L 344 (987)
..++|||+|||.++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|+|..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 56999999999999999999999999 5 6777776 778999999999999999999 899999999999
Q ss_pred cccccCCCCCCC----------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEE
Q 001976 345 DIHYSIPKDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKF 403 (987)
Q Consensus 345 ~V~~a~pk~~~~----------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aF 403 (987)
.|.++.+..... ......++|||+|||..+++++|+++|++||.|..|++..+ ++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 999887653221 11235579999999999999999999999999999998754 378999
Q ss_pred EEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 404 IEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 404 VeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
|+|.+.++|.+|++.|||..|+|++|+|.+++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998753
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=6.9e-27 Score=231.61 Aligned_cols=157 Identities=18% Similarity=0.384 Sum_probs=137.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cc--cccceEEEEeCCHHHHHHHHHHccCcccc---ccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----AC--KHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLD 345 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tg--ksrGfAFV~F~d~e~A~kAl~~LnG~~i~---Gr~L~ 345 (987)
..++|||+|||+++|+++|+++|++||+|.+|++ ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999976 22 78999999999999999999999998776 56777
Q ss_pred ccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCC
Q 001976 346 IHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 346 V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG 421 (987)
+.++.+... .....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 776654433 2345679999999999999999999999999999998754 478999999999999999999999
Q ss_pred CeeC---CcEEEEEecc
Q 001976 422 SDVA---GKQIKLEASR 435 (987)
Q Consensus 422 ~~I~---Gr~LkV~~a~ 435 (987)
..+. |++|+|.||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 9776 4999999974
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=4.4e-25 Score=236.49 Aligned_cols=157 Identities=24% Similarity=0.356 Sum_probs=142.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...+.++|||+|||.++|+++|+++|++||.|..|++ .+.+|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 3456789999999999999999999999999999998 67799999999999999999999999999999999999864
Q ss_pred CCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhC-CCeeC--
Q 001976 353 DNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLN-RSDVA-- 425 (987)
Q Consensus 353 ~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LN-G~~I~-- 425 (987)
..+|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.|| +..+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 468999999999999999999999999999988643 57899999999999999999995 44544
Q ss_pred -CcEEEEEeccCCchh
Q 001976 426 -GKQIKLEASRPGGAR 440 (987)
Q Consensus 426 -Gr~LkV~~a~~k~~R 440 (987)
+++|.|.++.+...+
T Consensus 167 ~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 167 TPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SCCBCEEEECCCEESS
T ss_pred CCceEEEeeccccCcc
Confidence 999999999876543
No 21
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.80 E-value=4.5e-20 Score=183.78 Aligned_cols=162 Identities=19% Similarity=0.269 Sum_probs=125.9
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
.-..||++||+. ++.+.|.+. |..+.++. +.++ .+..++.++|||||.|. +.++|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~--------------f~~~g~~~----~~~~---~~~~~~~~~g~afV~f~-~~~~a~- 68 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVA--------------ISELFAKN----DLAV---VDVRTGTNRKFGYVDFE-SAEDLE- 68 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHH--------------HHHHHHHH----TCCC---CEEEEETTTTEEEEEES-SHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHH--------------HHHhCCcc----eEEE---EECCCCccccEEEEEEC-CHHHHH-
Confidence 345799999998 777777766 63333221 1111 22347889999999955 677777
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEE
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 305 (987)
+|+ .++|..+. ++.+.+..... .......+.++|||+|||.++|+++|+++|++||+|.
T Consensus 69 -~A~-~l~g~~~~-g~~l~v~~~~~------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 69 -KAL-ELTGLKVF-GNEIKLEKPKG------------------RDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp -HHH-HGGGEEET-TEEEEEECCCC------------------SSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred -HHH-hcCCCEeC-CeEEEEecCCC------------------ccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 688 49999998 55544433221 0112334679999999999999999999999999999
Q ss_pred EEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 306 TIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 306 sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
.+..++.++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.++
T Consensus 128 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 128 LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99667889999999999999999999999999999999999999876
No 22
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=3.7e-20 Score=192.36 Aligned_cols=166 Identities=12% Similarity=0.209 Sum_probs=125.6
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
....|||+||+. ++++.|.+. |+...++....+- .|..++.++|||||.|. +.++++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~--------------F~~~G~I~~v~i~------~d~~tg~~~G~afV~F~-~~~~A~- 71 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEK--------------FSPAGPILSIRVC------RDMITRRSLGYAYVNFQ-QPADAE- 71 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHH--------------HGGGSCEEEEEEE------ECTTTCCEEEEEEEEES-SHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHH--------------HHhhCCEEEEEEe------cccCCCCccccccceeC-CHHHHH-
Confidence 345799999998 888888887 8444443222111 23347889999999955 777777
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEE
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 305 (987)
+|+..++|..+. ++.+.+..... .........++|||+|||.++|+++|+++|++||.|.
T Consensus 72 -~Ai~~~~~~~~~-g~~i~~~~~~~------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 131 (213)
T 4f02_A 72 -RALDTMNFDVIK-GKPVRIMWSQR------------------DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 131 (213)
T ss_dssp -HHHHHHTTCEET-TEECEEEECCC------------------CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred -HHHHHhhhhhcC-Ccccccccccc------------------cccccccccccceECCcccccHHHHHHHHHhhcCCeE
Confidence 799999999887 43332211100 0001122457899999999999999999999999999
Q ss_pred EEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 306 TIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 306 sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
.|++ .+.++|||||+|.+.++|++|++.|||..|.|++|.|.++.++.+
T Consensus 132 ~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 132 SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp EEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred EEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 9976 455789999999999999999999999999999999999987643
No 23
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=9.9e-20 Score=184.28 Aligned_cols=183 Identities=14% Similarity=0.178 Sum_probs=127.8
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCc-CC--ChhhhhccCCCCeeeeecCCChhhhh
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNL-LP--DEDDLFSGVTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnI-Lp--dedDL~sG~SkGfGFV~f~~t~Eaae 224 (987)
..||++||+. ++.+.|.+. |....++. |-+ .+ ...++..+.++|||||+|. +.++|+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~--------------F~~~g~i~----g~~~~~~~~v~~~~~~~~~g~afV~F~-~~~~A~ 65 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDF--------------FNAQMRLG----GLTQAPGNPVLAVQINQDKNFAFLEFR-SVDETT 65 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHH--------------HHHHHHHH----TCCSSSSCSEEEEEEETTTTEEEEEES-CSHHHH
T ss_pred eEEEEcCCCCCCCHHHHHHH--------------HHHHHhhc----ccccCCCCceEEeEecCCCCEEEEEeC-CHHHHH
Confidence 4799999998 888888877 73332111 100 01 1123345778999999966 566666
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001976 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 ei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
+|+ .++|..+. ++.+.+..............................+.++|||+|||.++++++|+++|++||.|
T Consensus 66 --~Al-~l~g~~~~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 141 (198)
T 2yh0_A 66 --QAM-AFDGIIFQ-GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL 141 (198)
T ss_dssp --HHG-GGTTEEET-TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE
T ss_pred --HHH-HhcCCEEc-CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 688 89999997 55555544322111000000000000000112234577999999999999999999999999999
Q ss_pred EEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 305 ~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
..+++ ++.++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.++..
T Consensus 142 ~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 142 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred cEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99976 466799999999999999999999999999999999999987654
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=3.2e-19 Score=175.66 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=113.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHc-cCcccccccccccccCCCC------------CCCcccccccceeeecCCCCCCHH
Q 001976 311 CKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSIPKD------------NPSEKDANQGTLVVFNLDSSVSTE 377 (987)
Q Consensus 311 gksrGfAFV~F~d~e~A~kAl~~L-nG~~i~Gr~L~V~~a~pk~------------~~~~~~~~~~tLfV~NLp~~vTee 377 (987)
.+.+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++..+. .........++|||+|||..++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 99999876521 112233456799999999999999
Q ss_pred HHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 378 ELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 378 dLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
+|+++|++||.|.+|+++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999998889999999999999999999999999999999999998863
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.5e-19 Score=177.00 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=122.5
Q ss_pred ccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHH
Q 001976 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDL 228 (987)
Q Consensus 150 ~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~A 228 (987)
.||++||+. ++.+.|.+. |+...++....+ ..+. .+.++|||||.|. +.++|+ .|
T Consensus 2 ~l~V~nlp~~~t~~~l~~~--------------f~~~G~i~~v~i---~~~~----~~~~~g~afV~f~-~~~~a~--~A 57 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQY--------------FQVGGPIANIKI---MIDK----NNKNVNYAFVEYH-QSHDAN--IA 57 (166)
T ss_dssp EEEEEEEETTCCHHHHHHH--------------HGGGSCEEEEEE---ECCC----C-CCEEEEEEEES-SHHHHH--HH
T ss_pred EEEECCCCCcCCHHHHHHH--------------HHhcCCeEEEEE---EECC----CCCCCCEEEEEeC-CHHHHH--HH
Confidence 489999987 888788877 754444432211 1132 4668999999965 666667 79
Q ss_pred HhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE
Q 001976 229 FSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308 (987)
Q Consensus 229 i~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk 308 (987)
+..++|..+. ++.+.+..... .......+.++|||+|||.++++++|+++|++||.|..++
T Consensus 58 ~~~l~~~~~~-g~~i~v~~~~~------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 58 LQTLNGKQIE-NNIVKINWAFQ------------------SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp HHHHTTCEET-TEECEEEECCC------------------CCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred HHHcCCCccC-CCeeEEEEcCC------------------CCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 9999999997 44443322111 1112345678999999999999999999999999999997
Q ss_pred e-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 309 T-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 309 i-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
+ ++.++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 6 46789999999999999999999999999999999999985
No 26
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.1e-19 Score=183.54 Aligned_cols=170 Identities=18% Similarity=0.336 Sum_probs=120.3
Q ss_pred CCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001976 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 225 (987)
Q Consensus 147 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaee 225 (987)
....|||+||+. ++.+.|.+. |..+.++....+ . .+..+|.++|||||.|. +.++|+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~--------------F~~~G~i~~v~i---~---~~~~~g~~~g~afV~f~-~~~~A~- 69 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSH--------------FEQWGTLTDCVV---M---RDPNTKRSRGFGFVTYA-TVEEVD- 69 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHH--------------HGGGSCEEEEEE---E---ECTTTCCEEEEEEEEES-SHHHHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHH--------------HHhCCCEEEEEE---E---EcCCCCCccceEEEEeC-CHHHHH-
Confidence 345799999998 888888877 844443322111 1 12236889999999965 667766
Q ss_pred hHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEE
Q 001976 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (987)
Q Consensus 226 i~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 305 (987)
+|+.. +|..+. ++.+.+...... .....+....+.++|||+|||.++|+++|+++|++||.|.
T Consensus 70 -~A~~~-~~~~~~-g~~l~v~~~~~~--------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 70 -AAMNA-RPHKVD-GRVVEPKRAVSR--------------EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp -HHHHT-CSCEET-TEECEEEECCC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred -HHHhc-CCCEEC-CEEeeeecccCc--------------ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 68876 788887 444444332210 0011122344669999999999999999999999999999
Q ss_pred EEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCC
Q 001976 306 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356 (987)
Q Consensus 306 sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~ 356 (987)
.|++ +++++|||||+|.+.++|.+|++. ++..|.|+.|.|.++.++....
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9976 467899999999999999999975 8999999999999999887653
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=2.7e-19 Score=176.19 Aligned_cols=158 Identities=17% Similarity=0.248 Sum_probs=122.3
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001976 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei 226 (987)
-..||++||+. ++.+.|.+. |+...++....+ ..+..+|.++|||||.|. +.++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~--------------f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~-~~~~A~-- 59 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYAL--------------FRAIGPINTCRI------MRDYKTGYSYGYAFVDFT-SEMDSQ-- 59 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHH--------------HHTTSCEEEEEC------CEETTTTEECSEEEEEES-SHHHHH--
T ss_pred ccEEEEeCCCCCCCHHHHHHH--------------HHhcCCeeEEEE------EEeCCCCccceEEEEEEC-CHHHHH--
Confidence 35799999998 888788877 744433322111 122237789999999955 777777
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE
Q 001976 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (987)
Q Consensus 227 ~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 306 (987)
+|++.++|..+. ++.+.+..... .....+.++|||+|||.++++++|+++|++||.|..
T Consensus 60 ~a~~~l~~~~~~-g~~l~v~~~~~--------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 60 RAIKVLNGITVR-NKRLKVSYARP--------------------GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp HHHHHHTTCEET-TEECEEEECCC--------------------CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred HHHHhcCCCEeC-CcEEEEEecCC--------------------CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 799999999997 54443322111 112346789999999999999999999999999999
Q ss_pred EEe-----cccccceEEEEeCCHHHHHHHHHHccCccccc--cccccccc
Q 001976 307 IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYS 349 (987)
Q Consensus 307 Vki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a 349 (987)
+++ +++++|||||+|.+.++|.+|++.|+|..+.| ++|.|.|+
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 876 46678999999999999999999999999988 99999875
No 28
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=2.3e-19 Score=183.97 Aligned_cols=174 Identities=13% Similarity=0.253 Sum_probs=127.3
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
..|||+||+. ++.+.|.+. |+...++....+ +.+. .++.++|||||.|. +.++|+ +
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~--------------f~~~G~i~~v~i---~~~~---~~g~~~g~afV~f~-~~~~A~--~ 85 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQA--------------FAPFGPIKSIDM---SWDS---VTMKHKGFAFVEYE-VPEAAQ--L 85 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHH--------------HGGGSCEEEEEE---CCC----CC-CCCSEEEEEES-SHHHHH--H
T ss_pred CEEEEECCCCCCCHHHHHHH--------------HHhCCCEEEEEE---eecC---CCCccCceEEEEeC-CHHHHH--H
Confidence 4699999998 888888887 855544432222 1122 36789999999955 677777 7
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|++.++|..+. ++.+.+........ .. .............++|||+|||.++|+++|+++|++||.|..|
T Consensus 86 A~~~l~~~~~~-g~~l~v~~~~~~~~--------~~-~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 155 (216)
T 2qfj_A 86 ALEQMNSVMLG-GRNIKVGRPSNIGQ--------AQ-PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSA 155 (216)
T ss_dssp HHHHHSSCCCC--CCCEEECCSCCGG--------GH-HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEE
T ss_pred HHHHccCCeeC-CeeEEEecCCCccc--------cc-hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEE
Confidence 99999999987 54454433211000 00 0000000122456899999999999999999999999999999
Q ss_pred Ee-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001976 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (987)
Q Consensus 308 ki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~ 355 (987)
++ +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.++..+
T Consensus 156 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 156 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred EEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 76 4567999999999999999999999999999999999999877544
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=3.3e-19 Score=176.52 Aligned_cols=158 Identities=15% Similarity=0.237 Sum_probs=120.0
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCC---ChhhhhccCCCCeeeeecCCChhhhh
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP---DEDDLFSGVTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILp---dedDL~sG~SkGfGFV~f~~t~Eaae 224 (987)
..||++||+. ++.+.|.+. |....++ .|-+.. ...++..+.++|||||+|. +.++|+
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~--------------F~~~g~~----~g~~~~~~~~v~~~~~~~~~g~afV~f~-~~~~A~ 65 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDF--------------FNAQMRL----GGLTQAPGNPVLAVQINQDKNFAFLEFR-SVDETT 65 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHH--------------HHHHHHH----TTCCSSSSCSEEEEEEETTTTEEEEEES-SHHHHH
T ss_pred cEEEEcCCCcccCHHHHHHH--------------HHHHhhh----cccccCCCCceeeeEecCCCCEEEEEeC-CHHHHH
Confidence 4799999998 888888877 7333111 021110 1123345668999999965 677767
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001976 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 ei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
+|+ .++|..+. ++.+.+..... .......++|||+|||.++++++|+++|++||+|
T Consensus 66 --~A~-~~~~~~~~-g~~i~v~~~~~--------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 66 --QAM-AFDGIIFQ-GQSLKIRRPHD--------------------YQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp --HHG-GGTTCEET-TEECEEECCSS--------------------CCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred --HHH-HhCCcEec-CceeeecCCcc--------------------cCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 688 89999997 54443322111 0122347999999999999999999999999999
Q ss_pred EEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 305 ~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99976 5667999999999999999999999999999999999986
No 30
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=4.5e-18 Score=168.23 Aligned_cols=131 Identities=18% Similarity=0.269 Sum_probs=103.9
Q ss_pred cccccceEEEEeCCHHHHHHHHHHccCccccc-------ccccccccCCCC--CCCcccccccceeeecCCCCCCHHHHH
Q 001976 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLRR-------RKLDIHYSIPKD--NPSEKDANQGTLVVFNLDSSVSTEELH 380 (987)
Q Consensus 310 tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G-------r~L~V~~a~pk~--~~~~~~~~~~tLfV~NLp~~vTeedLr 380 (987)
..+.+|||||+|.+.++|++|++.+++..... ............ ..........+|||+|||..+++++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 34689999999999999999999887643222 222222111111 111223456799999999999999999
Q ss_pred HHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 001976 381 QIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 381 elFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~R 440 (987)
++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+++++..+
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999998653 6889999999999999999999999999999999999986543
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=1.9e-19 Score=177.39 Aligned_cols=157 Identities=17% Similarity=0.293 Sum_probs=117.5
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
..||++||+. ++.+.|.+. |+...++....+ ..+ ..+|.++|||||.|. +.++|+ .
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~--------------F~~~G~i~~v~i---~~~---~~~g~~~g~afV~f~-~~~~a~--~ 60 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREY--------------FGKYGTVTDLKI---MKD---PATGRSRGFGFLSFE-KPSSVD--E 60 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHH--------------HTTTCCEEEEEC---CCC---TTTSSCCSCEEEEES-STHHHH--H
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHhCCCEEEEEE---EEC---CCCCCccceEEEEEc-cHHHHH--H
Confidence 4699999998 888888877 744443322211 112 237889999999965 666666 6
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|+.. +..+. ++.+.+..... .....+.++|||+|||.++++++|+++|++||.|..+
T Consensus 61 A~~~--~~~~~-g~~i~v~~~~~--------------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 61 VVKT--QHILD-GKVIDPKRAIP--------------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp HHHS--CCEET-TEECCCEECCC--------------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE
T ss_pred HHhc--ccccC-CeEcccccccc--------------------hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE
Confidence 7774 44555 33222221111 0112346799999999999999999999999999999
Q ss_pred Ee-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 308 ki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
++ ++.++|||||+|.+.++|++|++ +++..+.|++|.|.++.|+
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 75 46789999999999999999997 9999999999999999876
No 32
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.6e-18 Score=169.79 Aligned_cols=157 Identities=19% Similarity=0.292 Sum_probs=119.7
Q ss_pred cccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001976 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (987)
Q Consensus 149 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei~ 227 (987)
..||++||+. ++.+.|.+. |+...++....+ . .+..+|.++|||||+|. +.++|+ +
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~--------------f~~~G~i~~v~~---~---~~~~~~~~~g~afV~f~-~~~~A~--~ 59 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSL--------------FGSIGEIESCKL---V---RDKITGQSLGYGFVNYI-DPKDAE--K 59 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHH--------------HHTTSCEEEEEE---E---ECTTTCCEEEEEEEEES-SHHHHH--H
T ss_pred ceEEEcCCCCCCCHHHHHHH--------------HHhcCCeEEEEE---E---eCCCCCcceeEEEEEEC-CHHHHH--H
Confidence 5799999997 888888877 744443322111 1 12236789999999955 777777 7
Q ss_pred HHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE
Q 001976 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (987)
Q Consensus 228 Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 307 (987)
|++.++|..+. ++.+.+..... .......++|||+|||.++++++|+++|++||.|..+
T Consensus 60 a~~~l~~~~~~-g~~l~v~~~~~--------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 60 AINTLNGLRLQ-TKTIKVSYARP--------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp HHHHHTTCEET-TEECEEEECCC--------------------CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred HHHHcCCCccC-CceEEEEecCC--------------------CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE
Confidence 99999999997 44443322111 1122356899999999999999999999999999999
Q ss_pred Ee-----cccccceEEEEeCCHHHHHHHHHHccCccccccc--cccccc
Q 001976 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK--LDIHYS 349 (987)
Q Consensus 308 ki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~--L~V~~a 349 (987)
++ ++.++|||||+|.+.++|.+|++.|+|..+.|+. |.|.||
T Consensus 119 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 119 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 76 4567999999999999999999999999999976 666654
No 33
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=1.9e-18 Score=170.81 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=117.5
Q ss_pred CcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhcc--CCCCeeeeecCCChhhhh
Q 001976 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSG--VTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 148 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG--~SkGfGFV~f~~t~Eaae 224 (987)
-..|||+||+. ++.+.|.+. |....++....+- .+. .++ .++|||||.|. +.++|+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~--------------F~~~G~i~~v~i~---~~~---~~~~~~~~g~afV~f~-~~~~A~ 61 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLREL--------------FEQYGAVYEINVL---RDR---SQNPPQSKGCCFVTFY-TRKAAL 61 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHH--------------HHTTSCEEEEEEE---EEC---SSSSCEEEEEEEEEES-SHHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHH--------------HHhCCCEEEEEEE---ecC---CCCCCCcceEEEEEEC-CHHHHH
Confidence 35799999998 888888877 7444333221111 111 133 68999999955 667767
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001976 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 ei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
+|++.++|..+.+.....+..... . .......+.++|||+|||.++|+++|+++|++||.|
T Consensus 62 --~A~~~l~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 122 (175)
T 3nmr_A 62 --EAQNALHNMKVLPGMHHPIQMKPA--------------D---SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQI 122 (175)
T ss_dssp --HHHHHHTTTCCCTTCSSCCEEEEC--------------G---GGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred --HHHHHhcCcEEccCCccceEEccc--------------c---ccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCE
Confidence 799989988765332111000000 0 011223467899999999999999999999999999
Q ss_pred EEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccc---ccccccccc
Q 001976 305 RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLDIHYS 349 (987)
Q Consensus 305 ~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~---Gr~L~V~~a 349 (987)
..+++ +++++|||||+|.+.++|++|++.|||..+. +++|.|.|+
T Consensus 123 ~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 123 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99976 4567999999999999999999999998776 499999987
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=3e-18 Score=162.02 Aligned_cols=103 Identities=16% Similarity=0.315 Sum_probs=72.5
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
..++|||+|||+++|+++|+++|++||+|.+|++ .+.++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3578999999999999999999999999999976 3557899999999999999999999999999999999999876
Q ss_pred CCCCc----ccccccceeeecCCCCCCHHH
Q 001976 353 DNPSE----KDANQGTLVVFNLDSSVSTEE 378 (987)
Q Consensus 353 ~~~~~----~~~~~~tLfV~NLp~~vTeed 378 (987)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 65422 223445899999999999863
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=4.6e-18 Score=182.62 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=71.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc-cccccccccC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSI 350 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~-Gr~L~V~~a~ 350 (987)
..+.++|||+|||.++++++|+++|++||.|..|++....+|||||+|.+.++|.+|++.|+|..|. |+.|.|.|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3467899999999999999999999999999999986555799999999999999999999999999 9999999975
No 36
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=6.7e-18 Score=175.67 Aligned_cols=172 Identities=9% Similarity=0.074 Sum_probs=117.9
Q ss_pred cccccccCc-c-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001976 149 SDIFTRKMK-L-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 149 ~~lFv~nL~-~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei 226 (987)
..|||+||+ . ++.+.|++. | ..+|+|+... +.. -++|||||+|. +.++|+
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~--------------F--------~~~G~v~~v~--i~~-~~~g~afV~f~-~~~~A~-- 56 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNV--------------F--------CLYGNVEKVK--FMK-SKPGAAMVEMA-DGYAVD-- 56 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHH--------------H--------TTTSCEEEEE--ECT-TSTTCEEEEES-SHHHHH--
T ss_pred CEEEEeCCCcccCCHHHHHHH--------------H--------HhcCCeEEEE--Eec-CCCCEEEEEEC-CHHHHH--
Confidence 469999999 6 888889988 8 4455444311 000 15899999955 677767
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCCCCCCCC----------CcCC-------CCCCCCCCCcEEEEccCCCCC
Q 001976 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAG----------SVVG-------EHPYGEHPSRTLFVRNINSNV 289 (987)
Q Consensus 227 ~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~----------~~~g-------e~~~~e~~srtLfVgNLP~~v 289 (987)
+|++.+||.+|. ++.+.|................... ...+ .......+.++|||+|||+++
T Consensus 57 ~Ai~~lng~~~~-g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~ 135 (205)
T 3tyt_A 57 RAITHLNNNFMF-GQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEV 135 (205)
T ss_dssp HHHHHHTTCEET-TEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTC
T ss_pred HHHHHhCCCEEC-CceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCC
Confidence 799999999998 5555554332110000000000000 0000 000113467899999999999
Q ss_pred ChHHHHHhhcccCcE--EEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccc----ccccccc
Q 001976 290 EDSELKALFEQFGDI--RTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR----KLDIHYS 349 (987)
Q Consensus 290 TEedLrelFs~fG~I--~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr----~L~V~~a 349 (987)
|+++|+++|++||.| ..+++ .+..+|||||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 136 t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 136 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999999 78875 234569999999999999999999999999887 4555543
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=1.2e-17 Score=157.92 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=73.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
..+|||+|||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++||+.|||..|.|++|+|.++.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 468999999999999999999999999999998754 47899999999999999999999999999999999999877
Q ss_pred hhhccchhhhhccCCccc-cCCCCCCCcc
Q 001976 439 ARRFMVQSEQEQDDLNLC-QIPFDDLSSG 466 (987)
Q Consensus 439 ~Rrl~qq~eq~q~e~nly-knLp~svt~e 466 (987)
.+.. +.....+...+|| +|||.++|++
T Consensus 85 ~~~~-~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 85 EREA-ELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp C----------------------------
T ss_pred cccc-ccccccCCCCceEeCCCCCCcccc
Confidence 5541 1222333447899 9999999876
No 38
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=4.8e-17 Score=170.71 Aligned_cols=178 Identities=19% Similarity=0.161 Sum_probs=124.5
Q ss_pred CCCcccccccCcc--CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhh
Q 001976 146 SSLSDIFTRKMKL--SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDL 223 (987)
Q Consensus 146 Ssl~~lFv~nL~~--~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaa 223 (987)
..-..|||+||+. ++.+.|.+. |+...++....+- .+ .+|||||+|. +.++|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~--------------F~~~G~i~~v~i~----~~-------~~g~afV~F~-~~~~A 85 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFIL--------------FGVYGDVQRVKIL----FN-------KKENALVQMA-DGNQA 85 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHH--------------HHHHTCEEEEEEC----CT-------TSCCEEEEES-CHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHH--------------HHhCCCeEEEEEE----EC-------CCCEEEEEEC-CHHHH
Confidence 3446799999975 677778777 7433333221111 11 2789999965 67777
Q ss_pred hhhHHHhccCCeeeeCCcccceecccccccCCCCC----------CCCCC-CCcC----CCCCCCCCCCcEEEEccCCCC
Q 001976 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSN----------QGVSA-GSVV----GEHPYGEHPSRTLFVRNINSN 288 (987)
Q Consensus 224 eei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n----------~~~~~-~~~~----ge~~~~e~~srtLfVgNLP~~ 288 (987)
+ +|++.++|..+. ++.+.+...........+. ..... .... ........+.++|||+|||.+
T Consensus 86 ~--~Ai~~l~g~~~~-g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~ 162 (229)
T 2adc_A 86 Q--LAMSHLNGHKLH-GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 162 (229)
T ss_dssp H--HHHHHHTTCBCS-SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT
T ss_pred H--HHHHHhCCCeEC-CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCcc
Confidence 7 799999999997 5555554332210000000 00000 0000 000112345799999999999
Q ss_pred CChHHHHHhhcccC-cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc-cccccccccCCC
Q 001976 289 VEDSELKALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSIPK 352 (987)
Q Consensus 289 vTEedLrelFs~fG-~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~-Gr~L~V~~a~pk 352 (987)
+++++|+++|++|| .|..|++..+.+|||||+|.+.++|.+|++.|+|..+. |++|.|.|+.++
T Consensus 163 ~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 163 VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999 99999986667999999999999999999999999999 999999999764
No 39
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=7.1e-17 Score=164.28 Aligned_cols=175 Identities=19% Similarity=0.182 Sum_probs=122.8
Q ss_pred cccccccCcc--CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001976 149 SDIFTRKMKL--SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (987)
Q Consensus 149 ~~lFv~nL~~--~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaaeei 226 (987)
..||++||+. ++.+.|.+. | ..+|.|.... +... .+|||||+|. +.++|+
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~--------------F--------~~~G~i~~v~--i~~~-~~g~afV~f~-~~~~a~-- 55 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFIL--------------F--------GVYGDVQRVK--ILFN-KKENALVQMA-DGNQAQ-- 55 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHH--------------H--------HTTCCCSEEE--CSTT-CSSCCEEECT-TTHHHH--
T ss_pred cEEEEeCCCcccCCHHHHHHH--------------H--------HhcCCEEEEE--EEeC-CCCEEEEEEC-CHHHHH--
Confidence 4799999975 677777777 7 4445444311 0000 2789999965 666666
Q ss_pred HHHhccCCeeeeCCcccceecccccccCCCCC----------CCCCC-CCc--C--CCCCCCCCCCcEEEEccCCCCCCh
Q 001976 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSN----------QGVSA-GSV--V--GEHPYGEHPSRTLFVRNINSNVED 291 (987)
Q Consensus 227 ~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n----------~~~~~-~~~--~--ge~~~~e~~srtLfVgNLP~~vTE 291 (987)
.|+..++|..+. ++.+.+...........+. ..... .+. . ........+.++|||+|||.++++
T Consensus 56 ~A~~~l~~~~~~-g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 134 (198)
T 1qm9_A 56 LAMSHLNGHKLH-GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 134 (198)
T ss_dssp HHHHHHTTCCCS-SCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCH
T ss_pred HHHHHhCCCeec-CeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCH
Confidence 799999999997 5555554332210000000 00000 000 0 000112346899999999999999
Q ss_pred HHHHHhhcccC-cEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc-cccccccccCCC
Q 001976 292 SELKALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSIPK 352 (987)
Q Consensus 292 edLrelFs~fG-~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~-Gr~L~V~~a~pk 352 (987)
++|+++|++|| .|..+++....+|||||+|.+.++|.+|++.|+|..+. |++|.|.|+.++
T Consensus 135 ~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 135 EDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999 99999986667999999999999999999999999999 999999998764
No 40
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=1.1e-16 Score=171.47 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=119.2
Q ss_pred CCCcccccccCcc-CCccccccCCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhh
Q 001976 146 SSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLE 224 (987)
Q Consensus 146 Ssl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~eE~F~S~EEie~~~iGnILpdedDL~sG~SkGfGFV~f~~t~Eaae 224 (987)
..-..|||+||+. ++.+.|.+. |....++....+ ..++|||||.|. +.++|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~--------------F~~~G~i~~v~i------------~~~kg~afV~f~-~~~~A~ 72 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRL--------------FERYGEPSEVFI------------NRDRGFGFIRLE-SRTLAE 72 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHH--------------TGGGCCCSEEEE------------ETTTTEEEEECS-SHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHH--------------HHhcCCEEEEEE------------eCCCcEEEEEEC-CHHHHH
Confidence 4445799999998 888888887 844333322222 346899999954 777777
Q ss_pred hhHHHhccCCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccCCCCCChHHHHHhhcccCcE
Q 001976 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (987)
Q Consensus 225 ei~Ai~~~nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 304 (987)
+|+..++|..+. ++.+.+.. ..+.++|||+|||..+|+++|+++|++||.|
T Consensus 73 --~A~~~l~g~~i~-g~~l~v~~--------------------------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 123 (261)
T 3sde_A 73 --IAKAELDGTILK-SRPLRIRF--------------------------ATHGAALTVKNLSPVVSNELLEQAFSQFGPV 123 (261)
T ss_dssp --HHHHHHTTCEET-TEECEEEE--------------------------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred --HHHHHcCCcEEC-CceeEeee--------------------------cccCCcccccCCCCCCCHHHHHHHHHhcCCe
Confidence 799999999997 44433321 1135799999999999999999999999999
Q ss_pred EEEEe----cccccceEEEEeCCHHHHHHHHHHccCc-ccc---cccccccccCCCCC
Q 001976 305 RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNK-PLR---RRKLDIHYSIPKDN 354 (987)
Q Consensus 305 ~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~-~i~---Gr~L~V~~a~pk~~ 354 (987)
..|++ +++++|||||+|.+.++|.+|++.|++. .+. +++|.|.++.+...
T Consensus 124 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 124 EKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred EEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99976 5778999999999999999999999654 443 99999999876543
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.64 E-value=1.1e-15 Score=151.18 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=76.2
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999986 57789999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876544
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=1e-15 Score=150.61 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=104.0
Q ss_pred CCCCeeeeecCCChhhhhhhHHHhcc-CCeeeeCCcccceecccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEccC
Q 001976 207 VTDDMGHNFQANTVDDLEDFDLFSSG-GGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNI 285 (987)
Q Consensus 207 ~SkGfGFV~f~~t~Eaaeei~Ai~~~-nG~eLegd~~v~vg~~~s~~~~~~~n~~~~~~~~~ge~~~~e~~srtLfVgNL 285 (987)
..+|+++|+|. +.++|+ +|+..+ ||.+++| .+.+......... .................+.++|||+||
T Consensus 11 ~l~G~~~ve~~-~~~~A~--~a~~~~~ng~~~~G--~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 11 TLKGETTTEAV-DAATAE--KVFKQYANDNGVDG--EWTYDDATKTFTV----TEGSHHHHHHMHRDSCPLDCKVYVGNL 81 (150)
T ss_dssp SSCEEEEEECS-SHHHHT--TTHHHHHHHHTCCC--EEEEETTTTEEEE----ECSSSSCCCCSCSSSSTTSCEEEEESC
T ss_pred cccccceeeec-CHHHHH--HHHHHHhcCCCCCC--ceecccccCcccc----ccccccccccccccCCCCCCEEEEeCC
Confidence 36789988854 666667 788888 8888885 3433322110000 000000111122334567799999999
Q ss_pred CCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001976 286 NSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (987)
Q Consensus 286 P~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~ 353 (987)
|+++|+++|+++|++||+|..|++...++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++.
T Consensus 82 ~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 82 GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999999866689999999999999999999999999999999999998763
No 43
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=5e-16 Score=145.80 Aligned_cols=103 Identities=26% Similarity=0.407 Sum_probs=92.5
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
..+.++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 346799999999999999999999999999999987 567799999999999999999999999999999999999975
Q ss_pred CCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC
Q 001976 352 KDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE 388 (987)
Q Consensus 352 k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~ 388 (987)
+... .+++...++++|+++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4322 567788899999999999985
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=141.17 Aligned_cols=76 Identities=22% Similarity=0.489 Sum_probs=71.7
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
..++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4689999999999999999999999999999975 57789999999999999999999999999999999999997
Q ss_pred C
Q 001976 351 P 351 (987)
Q Consensus 351 p 351 (987)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=139.75 Aligned_cols=76 Identities=28% Similarity=0.465 Sum_probs=70.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
..++|||+|||.++|+++|+++|++||+|.+|++.. .++|||||+|.+.++|++|++.|||..|.|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 346899999999999999999999999999999864 357899999999999999999999999999999999998
Q ss_pred C
Q 001976 436 P 436 (987)
Q Consensus 436 ~ 436 (987)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 46
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.59 E-value=1.2e-15 Score=148.57 Aligned_cols=121 Identities=19% Similarity=0.319 Sum_probs=77.5
Q ss_pred ceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001976 315 GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (987)
Q Consensus 315 GfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri 394 (987)
-++|++|.+...+..|++.++|....|+.- +.+..+ .......++|||+|||..+++++|+++|++||.|..|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 378899999999999999999877666542 233332 233455789999999999999999999999999999998
Q ss_pred cCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 001976 395 TQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 395 ~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~R 440 (987)
..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.|++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 643 5789999999999999999999999999999999999986543
No 47
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=136.53 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=82.3
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~ 357 (987)
++|||+|||.++|+++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..+.|++|.|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999988444799999999999999999999999999999999999987764322
Q ss_pred c------cccccceeeecCC
Q 001976 358 K------DANQGTLVVFNLD 371 (987)
Q Consensus 358 ~------~~~~~tLfV~NLp 371 (987)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1235689999997
No 48
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=5.8e-15 Score=147.87 Aligned_cols=123 Identities=17% Similarity=0.273 Sum_probs=74.0
Q ss_pred EEeCCHHHHHHHHHHccCcccc--cccccccccCCC----------------CCCCcccccccceeeecCCCCCCHHHHH
Q 001976 319 ISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPK----------------DNPSEKDANQGTLVVFNLDSSVSTEELH 380 (987)
Q Consensus 319 V~F~d~e~A~kAl~~LnG~~i~--Gr~L~V~~a~pk----------------~~~~~~~~~~~tLfV~NLp~~vTeedLr 380 (987)
.+|++.++|+.|+..+++.... |+.......... ...+......++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999887655 555555432111 0011223445689999999999999999
Q ss_pred HHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchhh
Q 001976 381 QIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (987)
Q Consensus 381 elFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~Rr 441 (987)
++|++||.|..|++..+ .+|||||+|.+.++|++||+.|||..|.|++|+|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999998754 47899999999999999999999999999999999999877554
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=137.33 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=74.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
+.++|||+|||..+++++|+++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999863 357899999999999999999999999999999999998
Q ss_pred CCchhh
Q 001976 436 PGGARR 441 (987)
Q Consensus 436 ~k~~Rr 441 (987)
.+..++
T Consensus 85 ~~~~~~ 90 (110)
T 3s8s_A 85 KGQQRM 90 (110)
T ss_dssp TTHHHH
T ss_pred CCcHHH
Confidence 877654
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=136.01 Aligned_cols=79 Identities=20% Similarity=0.426 Sum_probs=71.6
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccC-cEEEEEe-----cccccceEEEEeCCHHHHHHHHHHc-cCccccccccccccc
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYS 349 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG-~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~L-nG~~i~Gr~L~V~~a 349 (987)
+++|||+|||+++||++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.+ ++..+.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8998875 5789999999999999999999887 456899999999999
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=137.12 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=73.6
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356799999999999999999999999999999976 578999999999999999999999999999999999999
Q ss_pred cCCC
Q 001976 349 SIPK 352 (987)
Q Consensus 349 a~pk 352 (987)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 52
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=6.4e-15 Score=135.07 Aligned_cols=78 Identities=29% Similarity=0.441 Sum_probs=73.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~R 440 (987)
++|||+|||.++++++|+++|++||.|..|++..++++||||+|.+.++|++|++.|||..+.|++|+|.+++++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999999999999999999999999998778999999999999999999999999999999999999987643
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=130.96 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=76.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999987 577899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 54
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.9e-15 Score=137.19 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=73.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG--~~I~Gr~LkV~~a~~k 437 (987)
...++|||+|||+++++++|+++|++||+|++|+++.+ +|||||+|.+.++|++|++.|++ ..|.|++|+|.|++++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 35679999999999999999999999999999999875 89999999999999999998864 7899999999999987
Q ss_pred chhh
Q 001976 438 GARR 441 (987)
Q Consensus 438 ~~Rr 441 (987)
..+.
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6443
No 55
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=9.7e-15 Score=132.90 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=70.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
...-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.+|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 356799999999999999999999999999999876 699999999999999999999999999999999999953
No 56
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=133.92 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=72.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCe--eCCcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~--I~Gr~LkV~~a~~k 437 (987)
.+.++|||+|||.++++++|+++|++||.|++|++++ .||||||+|.+.++|.+|++.||+.. |.|++|+|+|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 4567999999999999999999999999999999875 58999999999999999999999885 78999999999886
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
+
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 57
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=135.06 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=74.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC--cccccccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG--~~i~Gr~L~V~~a~ 350 (987)
...+.++|||+|||+++||++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.++.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 34578999999999999999999999999999999983 3589999999999999999998864 78999999999998
Q ss_pred CCCCCC
Q 001976 351 PKDNPS 356 (987)
Q Consensus 351 pk~~~~ 356 (987)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 776543
No 58
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.4e-14 Score=129.95 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=75.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 345689999999999999999999999999999998764 57899999999999999999999999999999999999
Q ss_pred CCchh
Q 001976 436 PGGAR 440 (987)
Q Consensus 436 ~k~~R 440 (987)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 86644
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=130.16 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567799999999999999999999999999999976 46778999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 001976 348 YSIPKDN 354 (987)
Q Consensus 348 ~a~pk~~ 354 (987)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 60
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=134.55 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=73.3
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcc--cccccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~--i~Gr~L~V~~a~ 350 (987)
...|+++|||+|||.++|+++|+++|++||.|.++++ .+.||||||+|.+.++|++|++.|++.. +.|++|+|.|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4458899999999999999999999999999999988 3578999999999999999999999986 789999999998
Q ss_pred CCC
Q 001976 351 PKD 353 (987)
Q Consensus 351 pk~ 353 (987)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 764
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=130.27 Aligned_cols=85 Identities=18% Similarity=0.394 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
....+.++|||+|||+++|+++|+++|++||+|..|++ +++.+|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34557899999999999999999999999999999976 357899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 001976 349 SIPKDNPS 356 (987)
Q Consensus 349 a~pk~~~~ 356 (987)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876653
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=130.43 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=76.0
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHh-CCCeeCCcEEE
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIK 430 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~------skG~aFVeF~d~edA~kAL~~L-NG~~I~Gr~Lk 430 (987)
.....++|||+|||..+++++|+++|++||.|..|+++.+ .+|||||+|.+.++|++|++.| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999998765 4899999999999999999999 99999999999
Q ss_pred EEeccCCchh
Q 001976 431 LEASRPGGAR 440 (987)
Q Consensus 431 V~~a~~k~~R 440 (987)
|.|++++..+
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987643
No 63
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4e-14 Score=130.52 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 35567899999999999999999999999999999976 5678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999877554
No 64
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.2e-14 Score=128.98 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=74.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999998643 5799999999999999999999999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987754
No 65
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.52 E-value=6.2e-15 Score=133.89 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=69.4
Q ss_pred cceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEEecc
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLN-RSDVAGKQIKLEASR 435 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG-~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LN-G~~I~Gr~LkV~~a~ 435 (987)
++|||+|||.++|+++|+++|++|| +|.+|+++. .++|||||+|.+.++|++|++.|+ +..++|++|+|+|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 899998864 368999999999999999999874 568999999999999
Q ss_pred CCc
Q 001976 436 PGG 438 (987)
Q Consensus 436 ~k~ 438 (987)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.2e-14 Score=129.37 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=74.8
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
.....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999998753 468999999999999999999999999999999999
Q ss_pred ccCCch
Q 001976 434 SRPGGA 439 (987)
Q Consensus 434 a~~k~~ 439 (987)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998764
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=131.33 Aligned_cols=84 Identities=15% Similarity=0.309 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
....+.++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35567899999999999999999999999999999886 4567899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 877544
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.2e-14 Score=127.88 Aligned_cols=81 Identities=25% Similarity=0.445 Sum_probs=75.1
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999976 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887654
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=130.87 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=76.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 446789999999999999999999999999999998743 57899999999999999999999999999999999999
Q ss_pred CCchhh
Q 001976 436 PGGARR 441 (987)
Q Consensus 436 ~k~~Rr 441 (987)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877543
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=4.3e-14 Score=127.07 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
..+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999976 46689999999999999999999999999999999999998
Q ss_pred CCCCC
Q 001976 351 PKDNP 355 (987)
Q Consensus 351 pk~~~ 355 (987)
+....
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=126.71 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=72.8
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
..++|||+|||.++++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3578999999999999999999999999999998643 5889999999999999999999999999999999999
Q ss_pred cCCch
Q 001976 435 RPGGA 439 (987)
Q Consensus 435 ~~k~~ 439 (987)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=5.8e-14 Score=129.41 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccc---cccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR---RKLD 345 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G---r~L~ 345 (987)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.| ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999976 45678999999999999999999999999998 9999
Q ss_pred ccccCCCCCC
Q 001976 346 IHYSIPKDNP 355 (987)
Q Consensus 346 V~~a~pk~~~ 355 (987)
|.++.++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887654
No 73
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=2.7e-14 Score=125.80 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=71.8
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
+.+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999976 467799999999999999999999999999999999999987
Q ss_pred CC
Q 001976 352 KD 353 (987)
Q Consensus 352 k~ 353 (987)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.7e-14 Score=128.28 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=75.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ |++..|.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3457799999999999999999999999999999987 46689999999999999999998 99999999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99887654
No 75
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.1e-14 Score=130.15 Aligned_cols=83 Identities=24% Similarity=0.467 Sum_probs=76.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567899999999999999999999999999999976 46789999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887654
No 76
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=5.7e-14 Score=131.70 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999976 4667899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999887654
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=130.66 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=73.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL--NRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~L--NG~~I~Gr~LkV~~a~~k 437 (987)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++.| ++..+.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 45679999999999999999999999999999998875 899999999999999999987 567899999999999987
Q ss_pred chh
Q 001976 438 GAR 440 (987)
Q Consensus 438 ~~R 440 (987)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 644
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=126.43 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=70.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
+.++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..+.|++|+|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4579999999999999999999999999999998654 47899999999999999999999999999999999998
Q ss_pred CC
Q 001976 436 PG 437 (987)
Q Consensus 436 ~k 437 (987)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 79
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=130.87 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 35567899999999999999999999999999999986 3678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876544
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.6e-14 Score=128.05 Aligned_cols=79 Identities=19% Similarity=0.351 Sum_probs=73.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA--GKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~--Gr~LkV~~a~~k 437 (987)
...++|||.|||..+++++|+++|++||.|..|++... ++||||+|.+.++|++|++.|||..|. |++|+|+|++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 34679999999999999999999999999999999875 899999999999999999999999999 999999999987
Q ss_pred ch
Q 001976 438 GA 439 (987)
Q Consensus 438 ~~ 439 (987)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.4e-14 Score=130.32 Aligned_cols=81 Identities=30% Similarity=0.451 Sum_probs=74.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~--skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
....++|||.|||.++++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.||+..|.|++|+|+|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345679999999999999999999999999999998654 578999999999999999999999999999999999988
Q ss_pred Cch
Q 001976 437 GGA 439 (987)
Q Consensus 437 k~~ 439 (987)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 82
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=127.49 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=70.5
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999976 5668999999999999999999999999999999999999
Q ss_pred CCC
Q 001976 350 IPK 352 (987)
Q Consensus 350 ~pk 352 (987)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 83
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=3.5e-14 Score=125.58 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=70.7
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||.++++++|+++|++||.|..|+++.+ .+|||||+|.+.++|++|++.|||..+.|++|+|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999998643 5889999999999999999999999999999999998
Q ss_pred c
Q 001976 435 R 435 (987)
Q Consensus 435 ~ 435 (987)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 84
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=3e-14 Score=129.63 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=73.8
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
|+++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999986 46779999999999999999999999999999999999998
Q ss_pred CCCC
Q 001976 351 PKDN 354 (987)
Q Consensus 351 pk~~ 354 (987)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 85
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=129.59 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe------cccccceEEEEeCCHHHHHHHHHHc-cCcccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKL 344 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki------tgksrGfAFV~F~d~e~A~kAl~~L-nG~~i~Gr~L 344 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 35567899999999999999999999999999999986 4557999999999999999999999 9999999999
Q ss_pred cccccCCCCCC
Q 001976 345 DIHYSIPKDNP 355 (987)
Q Consensus 345 ~V~~a~pk~~~ 355 (987)
.|.++.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887654
No 86
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.3e-14 Score=128.46 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=75.8
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
.....++|||+|||..+++++|+++|++||.|..|+++.+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3456689999999999999999999999999999998754 4789999999999999999999999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 987643
No 87
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.9e-14 Score=135.94 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC--cccccccccccc
Q 001976 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHY 348 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG--~~i~Gr~L~V~~ 348 (987)
.....++++|||+|||+++||++|+++|++||.|..|++. +.||||||+|.+.++|++|++.+++ ..|.|++|+|.+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3455678999999999999999999999999999999873 4589999999999999999998875 689999999999
Q ss_pred cCCCCCCC
Q 001976 349 SIPKDNPS 356 (987)
Q Consensus 349 a~pk~~~~ 356 (987)
+.++....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98776543
No 88
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=4.2e-14 Score=124.51 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=71.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
.+|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..+.|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999988643 4789999999999999999999999999999999999986
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=1.1e-14 Score=167.87 Aligned_cols=147 Identities=20% Similarity=0.324 Sum_probs=106.5
Q ss_pred HHHHhhcccCcEEEEEe-------cccccceE-----EEEeCCHHHHHHHHHHccCccccccc-------------cccc
Q 001976 293 ELKALFEQFGDIRTIYT-------ACKHRGFV-----MISYYDIRAARNAMKALQNKPLRRRK-------------LDIH 347 (987)
Q Consensus 293 dLrelFs~fG~I~sVki-------tgksrGfA-----FV~F~d~e~A~kAl~~LnG~~i~Gr~-------------L~V~ 347 (987)
.|.++|.++|+|..|.. ..+..+|+ |+.|....++..++..++......+. ..+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37899999999988732 11233444 77887766665555433332222210 0111
Q ss_pred ccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCC
Q 001976 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 348 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
...+...........++|||+|||..+++++|+++|++||.|+.|.|+.+ ++|||||+|.+.++|.+||+.|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 11222222223345679999999999999999999999999999998643 5899999999999999999999999
Q ss_pred eeCCcEEEEEeccCCch
Q 001976 423 DVAGKQIKLEASRPGGA 439 (987)
Q Consensus 423 ~I~Gr~LkV~~a~~k~~ 439 (987)
.|.|++|.|.|+.++..
T Consensus 168 ~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTV 184 (437)
T ss_pred EECCEEEEEEEeCCCCC
Confidence 99999999999997653
No 90
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.6e-14 Score=128.26 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=73.3
Q ss_pred cccceeeecCCCCCCHHHHH----HHhhccCCEEEEEEcCCC--CcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 361 NQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQHK--HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLr----elFs~fG~I~~Vri~~~s--kG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...+|||+|||..+++++|+ ++|++||.|.+|+++.+. ++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45789999999999999999 999999999999998543 889999999999999999999999999999999999
Q ss_pred cCCch
Q 001976 435 RPGGA 439 (987)
Q Consensus 435 ~~k~~ 439 (987)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 88653
No 91
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.1e-14 Score=131.72 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCc--cccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK--PLRRRKLDIHYS 349 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~--~i~Gr~L~V~~a 349 (987)
....++++|||+|||.++++++|+++|++||+|..|.+. +.||||||+|.+.++|++|++.|++. .+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 345678999999999999999999999999999999873 45899999999999999999988765 499999999999
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876543
No 92
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.6e-14 Score=127.98 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec---ccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit---gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
....+.++|||+|||.++++++|+++|++||+|..|++. ..++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 355678999999999999999999999999999999872 34689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887654
No 93
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.50 E-value=4.7e-14 Score=132.45 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999876 5678899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887654
No 94
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.8e-14 Score=129.94 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=74.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.|..|+++.+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45679999999999999999999999999999998654 6899999999999999999999999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987644
No 95
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6.7e-14 Score=130.09 Aligned_cols=84 Identities=21% Similarity=0.455 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHcc------Ccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQ------NKPLR 340 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~Ln------G~~i~ 340 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 45567899999999999999999999999999999986 36789999999999999999999999 99999
Q ss_pred cccccccccCCCCCC
Q 001976 341 RRKLDIHYSIPKDNP 355 (987)
Q Consensus 341 Gr~L~V~~a~pk~~~ 355 (987)
|++|.|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887654
No 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=5.6e-14 Score=130.76 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=75.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999998754 479999999999999999999999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9987654
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=127.86 Aligned_cols=80 Identities=19% Similarity=0.404 Sum_probs=74.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++ ||+..|.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999754 57999999999999999999 9999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
.++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987654
No 98
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=9.6e-14 Score=129.03 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=75.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhC------CCeeCCc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLN------RSDVAGK 427 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LN------G~~I~Gr 427 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 345679999999999999999999999999999998743 68999999999999999999999 9999999
Q ss_pred EEEEEeccCCchhh
Q 001976 428 QIKLEASRPGGARR 441 (987)
Q Consensus 428 ~LkV~~a~~k~~Rr 441 (987)
+|+|.++.++..+.
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876543
No 99
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.2e-14 Score=125.74 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=71.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++.. ..++||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34578999999999999999999999999999999864 3468999999999999999999999999999999999
Q ss_pred ccC
Q 001976 434 SRP 436 (987)
Q Consensus 434 a~~ 436 (987)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 100
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=6.9e-14 Score=127.18 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=73.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
.++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 568999999999999999999999999999998754 479999999999999999999999999999999999998
Q ss_pred Cchh
Q 001976 437 GGAR 440 (987)
Q Consensus 437 k~~R 440 (987)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7643
No 101
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.6e-14 Score=131.02 Aligned_cols=81 Identities=17% Similarity=0.444 Sum_probs=74.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4456799999999999999999999999999999976 36789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 001976 348 YSIPKD 353 (987)
Q Consensus 348 ~a~pk~ 353 (987)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997754
No 102
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.6e-14 Score=126.28 Aligned_cols=78 Identities=28% Similarity=0.408 Sum_probs=73.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456799999999999999999999999999999987 78999999999999999999999999999999999998764
Q ss_pred h
Q 001976 440 R 440 (987)
Q Consensus 440 R 440 (987)
+
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 103
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.50 E-value=7.1e-14 Score=131.05 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=75.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999998654 368999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 001976 434 SRPGGARR 441 (987)
Q Consensus 434 a~~k~~Rr 441 (987)
++++..+.
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876543
No 104
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.50 E-value=4.2e-14 Score=125.07 Aligned_cols=77 Identities=29% Similarity=0.484 Sum_probs=71.5
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999976 466899999999999999999999999999999999998
Q ss_pred cC
Q 001976 349 SI 350 (987)
Q Consensus 349 a~ 350 (987)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 105
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=130.41 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=73.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345679999999999999999999999999999998643 478999999999999999999999999999999999
Q ss_pred ccCCch
Q 001976 434 SRPGGA 439 (987)
Q Consensus 434 a~~k~~ 439 (987)
++++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.6e-14 Score=132.53 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=71.3
Q ss_pred ccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEeccC
Q 001976 360 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRP 436 (987)
Q Consensus 360 ~~~~tLfV~NLp~-~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~--~I~Gr~LkV~~a~~ 436 (987)
.+.++|||+|||+ ++++++|+++|++||+|.+|+++.+ ++||||+|.+.++|.+|++.||+. .|.|++|+|.+++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3567999999999 9999999999999999999999865 799999999999999999999864 59999999999986
Q ss_pred Cc
Q 001976 437 GG 438 (987)
Q Consensus 437 k~ 438 (987)
+.
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.4e-14 Score=131.54 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=72.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~--~I~Gr~LkV~~a~~k 437 (987)
.+.++|||+|||.++++++|+++|++||.|..|+++.. +|||||+|.+.++|.+|++.|++. .|.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 45679999999999999999999999999999998764 899999999999999999998765 599999999999986
Q ss_pred chh
Q 001976 438 GAR 440 (987)
Q Consensus 438 ~~R 440 (987)
..+
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 643
No 108
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7e-14 Score=128.87 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=75.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999999999999999999999999999998654 578999999999999999999999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9987643
No 109
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.8e-14 Score=128.28 Aligned_cols=84 Identities=18% Similarity=0.421 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35567899999999999999999999999999999986 234689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876544
No 110
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.4e-14 Score=128.04 Aligned_cols=81 Identities=27% Similarity=0.463 Sum_probs=74.2
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec--------ccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit--------gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
.+.++|||+|||.++++++|+++|++||+|..|++. ++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 467999999999999999999999999999999762 267899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999877654
No 111
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7.5e-14 Score=130.10 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=73.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCC-----cEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-----KQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~G-----r~LkV~~a 434 (987)
...++|||.|||.++++++|+++|++||+|..|++..+ +||||+|.+.++|++||+.|||..|.| ++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 34679999999999999999999999999999999876 999999999999999999999999999 99999999
Q ss_pred cCCch
Q 001976 435 RPGGA 439 (987)
Q Consensus 435 ~~k~~ 439 (987)
.++..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 98764
No 112
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=4.4e-14 Score=131.77 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=81.5
Q ss_pred ccccccccccCCCCCCCcccccccceeeecCCCC-CCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Q 001976 340 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRT 418 (987)
Q Consensus 340 ~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~-vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~ 418 (987)
.|..|.|..+.+.... ......++|||+|||.. +++++|+++|++||.|..|++ .++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4667777766554332 22334579999999999 999999999999999999998 689999999999999999999
Q ss_pred hCCCeeCCcEEEEEeccCCc
Q 001976 419 LNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 419 LNG~~I~Gr~LkV~~a~~k~ 438 (987)
|||..|.|++|+|++++++.
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998644
No 113
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.5e-14 Score=126.18 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=73.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
..++|||+|||..+++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4579999999999999999999999999999998754 47899999999999999999999999999999999999
Q ss_pred CCchh
Q 001976 436 PGGAR 440 (987)
Q Consensus 436 ~k~~R 440 (987)
++..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87643
No 114
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=132.40 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCCCcEEEEccCCC-CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCc--ccccccccccccC
Q 001976 274 EHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK--PLRRRKLDIHYSI 350 (987)
Q Consensus 274 e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~--~i~Gr~L~V~~a~ 350 (987)
..++++|||+|||+ ++|+++|+++|++||+|.+|++ .+.+|||||+|.+.++|++|++.|++. .|.|++|+|.++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 34789999999999 9999999999999999999998 456799999999999999999999875 4999999999998
Q ss_pred CCCC
Q 001976 351 PKDN 354 (987)
Q Consensus 351 pk~~ 354 (987)
.+..
T Consensus 91 ~~~~ 94 (102)
T 1x4d_A 91 KYKR 94 (102)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=136.32 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=73.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG--~~I~Gr~LkV~~a~~k 437 (987)
.+.++|||+|||+++++++|+++|++||.|++|+++.+ +|||||+|.+.++|.+|++.|++ ..|.|++|+|.|++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 35679999999999999999999999999999998875 89999999999999999999984 6899999999999987
Q ss_pred chhh
Q 001976 438 GARR 441 (987)
Q Consensus 438 ~~Rr 441 (987)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6543
No 116
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.7e-14 Score=129.21 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHcc--Cccccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYS 349 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~Ln--G~~i~Gr~L~V~~a 349 (987)
....++++|||+|||.++++++|+++|++||.|..|.+. +.||||||+|.+.++|++|++.|+ +..+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 345678999999999999999999999999999999873 459999999999999999999875 57799999999999
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876544
No 117
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=131.27 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567799999999999999999999999999999976 4678999999999999999999999999999999999
Q ss_pred cccCCCC
Q 001976 347 HYSIPKD 353 (987)
Q Consensus 347 ~~a~pk~ 353 (987)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 118
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.4e-14 Score=129.52 Aligned_cols=81 Identities=26% Similarity=0.489 Sum_probs=74.7
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||.++++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999764 5789999999999999999999999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987644
No 119
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.2e-14 Score=128.95 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=74.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345689999999999999999999999999999998643 468999999999999999999999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987643
No 120
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.49 E-value=5.2e-14 Score=132.19 Aligned_cols=83 Identities=16% Similarity=0.348 Sum_probs=75.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||.++++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999988643 468999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 001976 434 SRPGGARR 441 (987)
Q Consensus 434 a~~k~~Rr 441 (987)
++++..++
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99877543
No 121
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=128.59 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=74.4
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEE-Ee-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV-ki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.+.++|||+|||.++++++|+++|++||.|..+ ++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999887 65 466799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887654
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=125.97 Aligned_cols=81 Identities=28% Similarity=0.492 Sum_probs=74.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc--cccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~--Gr~L~V~~a~ 350 (987)
...+.++|||+|||.++++++|+++|++||+|..|++. ..+|||||+|.+.++|++|++.|++..+. |++|.|.++.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 34567999999999999999999999999999999884 34899999999999999999999999999 9999999998
Q ss_pred CCCC
Q 001976 351 PKDN 354 (987)
Q Consensus 351 pk~~ 354 (987)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 123
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.4e-14 Score=126.00 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=72.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4457799999999999999999999999999999986 36678999999999999999999999999999999999
Q ss_pred ccC
Q 001976 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 124
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.3e-14 Score=130.08 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=75.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
...++|||+|||..+++++|+++|++||.|..|++..+ ++||||+|.+.++|++|++.|||..|.|++|+|.|++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 35679999999999999999999999999999999876 89999999999999999999999999999999999998764
Q ss_pred h
Q 001976 440 R 440 (987)
Q Consensus 440 R 440 (987)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 125
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=9.1e-14 Score=128.08 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=74.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAG---KQIKLE 432 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~G---r~LkV~ 432 (987)
...++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45689999999999999999999999999999998754 36899999999999999999999999998 999999
Q ss_pred eccCCchhh
Q 001976 433 ASRPGGARR 441 (987)
Q Consensus 433 ~a~~k~~Rr 441 (987)
+++++..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999877543
No 126
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.9e-14 Score=128.32 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=73.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~--------~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
..++|||+|||.++++++|+++|++||.|..|++.. ..++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999998864 346899999999999999999999999999999999
Q ss_pred eccCCchh
Q 001976 433 ASRPGGAR 440 (987)
Q Consensus 433 ~a~~k~~R 440 (987)
+++++..+
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99987643
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.49 E-value=2.6e-14 Score=139.15 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999976 5678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++..+
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999876554
No 128
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.6e-14 Score=128.83 Aligned_cols=83 Identities=20% Similarity=0.446 Sum_probs=75.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457799999999999999999999999999999986 45678999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 129
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=127.58 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=76.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcc-cCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcc-cccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQ-FGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~-fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~-i~Gr~L~V 346 (987)
...+.++|||+|||.++|+++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. +.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4457799999999999999999999999 999999976 56789999999999999999999999999 99999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877654
No 130
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=123.91 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=71.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345679999999999999999999999999999998754 468999999999999999999999999999999999
Q ss_pred cc
Q 001976 434 SR 435 (987)
Q Consensus 434 a~ 435 (987)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 131
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=9.8e-14 Score=127.95 Aligned_cols=79 Identities=27% Similarity=0.493 Sum_probs=73.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
.+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..|.|++|+|.+++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 456799999999999999999999999999999987 57999999999999999999999999999999999998775
Q ss_pred hh
Q 001976 440 RR 441 (987)
Q Consensus 440 Rr 441 (987)
++
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=124.55 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=73.9
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~ 353 (987)
..+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|.|.++.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 3567999999999999999999999999999999984 8999999999999999999999999999999999998876
Q ss_pred CC
Q 001976 354 NP 355 (987)
Q Consensus 354 ~~ 355 (987)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 133
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=126.57 Aligned_cols=79 Identities=18% Similarity=0.376 Sum_probs=73.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567799999999999999999999999999999976 36789999999999999999999999999999999999
Q ss_pred ccCC
Q 001976 348 YSIP 351 (987)
Q Consensus 348 ~a~p 351 (987)
++.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9863
No 134
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=127.64 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=74.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4457799999999999999999999999999999998 456899999999999999999999999999999999999876
Q ss_pred CC
Q 001976 353 DN 354 (987)
Q Consensus 353 ~~ 354 (987)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 135
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.1e-14 Score=129.12 Aligned_cols=83 Identities=28% Similarity=0.445 Sum_probs=76.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999976 46689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 136
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.3e-14 Score=128.05 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=73.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEE-EEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~V-ri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
..++|||+|||..+++++|+++|++||.|..| +++.+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999998 88754 5789999999999999999999999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987644
No 137
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.7e-14 Score=128.31 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=73.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45679999999999999999999999999999998743 5789999999999999999999999999999999999
Q ss_pred cCCch
Q 001976 435 RPGGA 439 (987)
Q Consensus 435 ~~k~~ 439 (987)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 97653
No 138
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.2e-14 Score=129.30 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=66.1
Q ss_pred cEEEEccCCCCCChHHHHHhhcccC--cEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG--~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
.+|||+|||.++|+++|+++|++|| .|.++++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 8988875 67889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 001976 351 PKDNP 355 (987)
Q Consensus 351 pk~~~ 355 (987)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 139
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=8.5e-14 Score=134.64 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++.+|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999986 4678999999999999999999999999999999999
Q ss_pred cccCCCC
Q 001976 347 HYSIPKD 353 (987)
Q Consensus 347 ~~a~pk~ 353 (987)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 140
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=7.8e-14 Score=128.76 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccc---cccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL---RRRK 343 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i---~Gr~ 343 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34567899999999999999999999999999999986 467899999999999999999999999988 8999
Q ss_pred ccccccCCCCCC
Q 001976 344 LDIHYSIPKDNP 355 (987)
Q Consensus 344 L~V~~a~pk~~~ 355 (987)
|.|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999877654
No 141
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=9.6e-14 Score=130.13 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=73.4
Q ss_pred cccccceeeecCCCCCCHHHHH---HHhhccCCEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHhCCCeeCCc
Q 001976 359 DANQGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLr---elFs~fG~I~~Vri~~~--------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr 427 (987)
....++|||+|||.++++++|+ ++|++||+|..|+++.+ .+|||||+|.+.++|++|++.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 99999999999998754 347999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001976 428 QIKLEASRPGG 438 (987)
Q Consensus 428 ~LkV~~a~~k~ 438 (987)
+|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999875
No 142
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=6.9e-14 Score=131.00 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=73.2
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
......++|||+|||..+++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..|.|++|+|.|+++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 344567899999999999999999999999999999987 89999999999999999999999999999999999998
Q ss_pred Cchh
Q 001976 437 GGAR 440 (987)
Q Consensus 437 k~~R 440 (987)
+..|
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7643
No 143
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=127.08 Aligned_cols=82 Identities=17% Similarity=0.380 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec------ccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit------gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
....+.++|||+|||.++++++|+++|++|| |..|++. ++++|||||+|.+.++|++|+ .|++..|.|++|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 4456779999999999999999999999999 9999862 678999999999999999999 9999999999999
Q ss_pred ccccCCCCCC
Q 001976 346 IHYSIPKDNP 355 (987)
Q Consensus 346 V~~a~pk~~~ 355 (987)
|.++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 144
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=8.3e-14 Score=125.69 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
....+.++|||+|||.++++++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..+.|+.|.|.++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345678999999999999999999999999999999983 66999999999999999999999999999999999987
Q ss_pred CCCC
Q 001976 352 KDNP 355 (987)
Q Consensus 352 k~~~ 355 (987)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7554
No 145
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=124.08 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=72.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
....++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456899999999999999999999999999999987 4599999999999999999999999999999999998876
Q ss_pred h
Q 001976 439 A 439 (987)
Q Consensus 439 ~ 439 (987)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 146
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=7.7e-14 Score=124.00 Aligned_cols=78 Identities=13% Similarity=0.325 Sum_probs=71.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEec------ccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit------gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
..++|||+|||.++++++|+++|++||+|..+++. ++.+|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999761 238999999999999999999999999999999999999
Q ss_pred CCCC
Q 001976 350 IPKD 353 (987)
Q Consensus 350 ~pk~ 353 (987)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 147
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=122.75 Aligned_cols=76 Identities=32% Similarity=0.443 Sum_probs=71.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh-CCCeeCCcEEEEEecc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIKLEASR 435 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~L-NG~~I~Gr~LkV~~a~ 435 (987)
+...++|||+|||..+++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.| +|..+.|++|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34568999999999999999999999999999999886 4899999999999999999999 9999999999999985
No 148
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=123.68 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=72.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
....++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999997 4599999999999999999999999999999999999865
Q ss_pred h
Q 001976 439 A 439 (987)
Q Consensus 439 ~ 439 (987)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.47 E-value=7.1e-14 Score=130.05 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556799999999999999999999999999999986 4667999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 001976 347 HYSIPKDN 354 (987)
Q Consensus 347 ~~a~pk~~ 354 (987)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99976643
No 150
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.9e-14 Score=127.14 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=73.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ ++||||+|.+.++|++|++.|||..|.|++|+|.|++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 345679999999999999999999999999999998864 8999999999999999999999999999999999999865
No 151
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=130.86 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=68.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCC--EEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCC----eeCCcEE
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS----DVAGKQI 429 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~--I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~----~I~Gr~L 429 (987)
.-.||||+|||+.+|+++|+++|++||. |.+|+++.+ ++|||||+|.+.++|++|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3458999999999999999999999995 567887643 6899999999999999999999997 4899999
Q ss_pred EEEeccC
Q 001976 430 KLEASRP 436 (987)
Q Consensus 430 kV~~a~~ 436 (987)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 152
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=7.2e-14 Score=132.36 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=71.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG-~I~~Vri~-~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
...+|||+|||.++++++|+++|++|| +|..+++. .+++|||||+|.+.++|++||+.|||..|.|++|+|++++.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 357999999999999999999999999 99999985 4679999999999999999999999999999999999998654
No 153
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.4e-13 Score=124.31 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhcc--CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~f--G~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
....++|||+|||..+++++|+++|++| |.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|.++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3456899999999999999999999999 999999875 68999999999999999999999999999999999998
Q ss_pred Cch
Q 001976 437 GGA 439 (987)
Q Consensus 437 k~~ 439 (987)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 154
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.47 E-value=6.8e-14 Score=126.49 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|.|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34567799999999999999999999999999999976 35678999999999999999999999999999999999
Q ss_pred ccC
Q 001976 348 YSI 350 (987)
Q Consensus 348 ~a~ 350 (987)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 155
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=3.6e-14 Score=130.61 Aligned_cols=79 Identities=15% Similarity=0.335 Sum_probs=69.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCc--EEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCc----cccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD--IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PLRR 341 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~--I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~----~i~G 341 (987)
.+..-.||||+|||+++|+++|+++|++||. |.+|++ ++++||||||+|.+.++|++|++.|||. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456689999999999999999999999995 556654 5789999999999999999999999997 4899
Q ss_pred ccccccccCC
Q 001976 342 RKLDIHYSIP 351 (987)
Q Consensus 342 r~L~V~~a~p 351 (987)
|+|.|+|++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 156
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=125.26 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=71.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 345679999999999999999999999999999998754 4689999999999999999999999999999999998
Q ss_pred cC
Q 001976 435 RP 436 (987)
Q Consensus 435 ~~ 436 (987)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 157
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=5.3e-14 Score=127.61 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=76.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 44577999999999999999999999999999988667889999999999999999999999999999999999999876
Q ss_pred CC
Q 001976 353 DN 354 (987)
Q Consensus 353 ~~ 354 (987)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 158
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=122.71 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHc-cCcccccccccccccC
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSI 350 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~L-nG~~i~Gr~L~V~~a~ 350 (987)
....+.++|||+|||.++++++|+++|++||+|..+++. +.+|||||+|.+.++|++|++.| ++..+.|++|.|.|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345678999999999999999999999999999999883 46899999999999999999999 9999999999999873
No 159
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=132.85 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=75.8
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
.....++|||+|||.++++++|+++|++||+|++|++..+ ++|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3445679999999999999999999999999999988643 47899999999999999999999999999999999
Q ss_pred eccCCchhh
Q 001976 433 ASRPGGARR 441 (987)
Q Consensus 433 ~a~~k~~Rr 441 (987)
+++++..+.
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=1.1e-13 Score=127.67 Aligned_cols=82 Identities=15% Similarity=0.311 Sum_probs=74.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCee---CCcEEE
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDV---AGKQIK 430 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I---~Gr~Lk 430 (987)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 445689999999999999999999999999999998754 579999999999999999999999998 899999
Q ss_pred EEeccCCchh
Q 001976 431 LEASRPGGAR 440 (987)
Q Consensus 431 V~~a~~k~~R 440 (987)
|.++.++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999987643
No 161
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.3e-14 Score=131.91 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=73.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.|..|+++. ..+|||||+|.+.++|++|| .|||..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4567999999999999999999999999999999973 45789999999999999999 89999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876644
No 162
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=6e-14 Score=128.60 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=71.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
..++|||+|||..+++++|+++|++||.|.+|++. ..+|||||+|.+.++|++|++.|||..+.|++|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45799999999999999999999999999999987 46899999999999999999999999999999999999874
No 163
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=6.9e-14 Score=126.90 Aligned_cols=82 Identities=28% Similarity=0.619 Sum_probs=74.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHH----HhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
...+.++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34578999999999999999999 99999999999987 4578899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 001976 347 HYSIPKDN 354 (987)
Q Consensus 347 ~~a~pk~~ 354 (987)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987653
No 164
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.5e-14 Score=123.14 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=70.6
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|||..+.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999975 4677999999999999999999999999999999999875
Q ss_pred C
Q 001976 350 I 350 (987)
Q Consensus 350 ~ 350 (987)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.2e-14 Score=130.33 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=74.8
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
......++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34456789999999999999999999999999999998754 489999999999999999999999999999999999
Q ss_pred ccCCc
Q 001976 434 SRPGG 438 (987)
Q Consensus 434 a~~k~ 438 (987)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 166
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.6e-14 Score=127.55 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=72.2
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...++|||+|||.++++++|+++|++||.|..+++. +++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 356899999999999999999999999999999984 78999999999999999999999999999999999998764
No 167
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=127.36 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=72.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
...++|||+|||.++++++|+++|++|| |..|+++.+ .+|||||+|.+.++|++|| .||+..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999998743 4789999999999999999 8999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 168
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=129.94 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=72.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
..++|||+|||..+++++|+++|++||.|..|++.. .++||||+|.+.++|++|++.|||..|.|++|+|+|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 467999999999999999999999999999999875 68999999999999999999999999999999999998754
No 169
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=127.01 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=74.3
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4456899999999999999999999999999999876 456789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001976 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 875443
No 170
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=130.15 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=75.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999976 5678899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 171
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=133.83 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=74.2
Q ss_pred CCCCCcEEEEccCCCCCChHHHH----HhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
...+.++|||+|||+.+++++|+ ++|++||+|..|.+ +++++|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34568999999999999999876 69999999999977 5688999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 001976 347 HYSIPKDN 354 (987)
Q Consensus 347 ~~a~pk~~ 354 (987)
.|+.++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=8.6e-14 Score=125.05 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=73.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~---skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
...++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45679999999999999999999999999999988643 578999999999999999999999999999999999998
Q ss_pred Cch
Q 001976 437 GGA 439 (987)
Q Consensus 437 k~~ 439 (987)
+..
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 173
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=126.44 Aligned_cols=80 Identities=13% Similarity=0.380 Sum_probs=73.5
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEE-EEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccc----
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIR-TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK---- 343 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~-sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~---- 343 (987)
..+.++|||+|||.++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999999 8875 4678899999999999999999999999999999
Q ss_pred ccccccCCCC
Q 001976 344 LDIHYSIPKD 353 (987)
Q Consensus 344 L~V~~a~pk~ 353 (987)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997654
No 174
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=129.36 Aligned_cols=84 Identities=23% Similarity=0.352 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEE--------EEEe-----cccccceEEEEeCCHHHHHHHHHHccCcc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--------TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKP 338 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~--------sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~ 338 (987)
....+.++|||+|||.++|+++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 4654 46789999999999999999999999999
Q ss_pred cccccccccccCCCCCC
Q 001976 339 LRRRKLDIHYSIPKDNP 355 (987)
Q Consensus 339 i~Gr~L~V~~a~pk~~~ 355 (987)
|.|++|.|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887654
No 175
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=127.46 Aligned_cols=84 Identities=19% Similarity=0.392 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 35567899999999999999999999999999999976 467889999999999999999998 999999999999
Q ss_pred cccCCCCCCC
Q 001976 347 HYSIPKDNPS 356 (987)
Q Consensus 347 ~~a~pk~~~~ 356 (987)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998876543
No 176
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.3e-14 Score=132.00 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=73.3
Q ss_pred CCCCcEEEEccCCCC-CChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC--cccccccccccccC
Q 001976 274 EHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSI 350 (987)
Q Consensus 274 e~~srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG--~~i~Gr~L~V~~a~ 350 (987)
..++++|||+|||++ +++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++ ..|.|++|+|.++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 557899999999998 999999999999999999998 56799999999999999999998865 56999999999997
Q ss_pred CCCCC
Q 001976 351 PKDNP 355 (987)
Q Consensus 351 pk~~~ 355 (987)
.+...
T Consensus 101 ~~~~~ 105 (112)
T 1x4f_A 101 KYKKL 105 (112)
T ss_dssp SCSSS
T ss_pred ccccc
Confidence 76543
No 177
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=125.45 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=72.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
.....++|||+|||.++++++|+++|++||.|....++++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34567899999999999999999999999999633346788999999999999999999999999999999999999876
Q ss_pred C
Q 001976 353 D 353 (987)
Q Consensus 353 ~ 353 (987)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=128.77 Aligned_cols=80 Identities=28% Similarity=0.366 Sum_probs=73.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 445679999999999999999999999999999988643 468999999999999999999999999999999999
Q ss_pred ccCCc
Q 001976 434 SRPGG 438 (987)
Q Consensus 434 a~~k~ 438 (987)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 99865
No 179
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=125.99 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE--------EEe-----cccccceEEEEeCCHHHHHHHHHHccCcc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKP 338 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--------Vki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~ 338 (987)
....+.++|||+|||.++++++|+++|++||.|.. +++ +++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999998 765 46789999999999999999999999999
Q ss_pred cccccccccccC
Q 001976 339 LRRRKLDIHYSI 350 (987)
Q Consensus 339 i~Gr~L~V~~a~ 350 (987)
+.|++|+|+++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 180
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2e-13 Score=125.67 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456789999999999999999999999997 999876 4678999999999999999999 89999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999877654
No 181
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.3e-13 Score=129.88 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 35567799999999999999999999999999999976 4677999999999999999999999999999999999
Q ss_pred cccC
Q 001976 347 HYSI 350 (987)
Q Consensus 347 ~~a~ 350 (987)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9863
No 182
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.46 E-value=1.6e-13 Score=132.75 Aligned_cols=80 Identities=21% Similarity=0.374 Sum_probs=73.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||.++++++|+++|++||+|..|++.. ..+|||||+|.+.++|++||+.|||..|.|++|+|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567999999999999999999999999999999864 35789999999999999999999999999999999999
Q ss_pred cCCch
Q 001976 435 RPGGA 439 (987)
Q Consensus 435 ~~k~~ 439 (987)
+++..
T Consensus 124 ~~~~p 128 (129)
T 2kxn_B 124 ITKRP 128 (129)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 88653
No 183
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=2.5e-13 Score=124.53 Aligned_cols=77 Identities=29% Similarity=0.388 Sum_probs=71.8
Q ss_pred cccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 359 DANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 359 ~~~~~tLfV~NLp~-~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
....++|||+|||. .+++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|||..+.|++|+|++++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34578999999998 99999999999999999999984 899999999999999999999999999999999999875
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 184
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-13 Score=128.13 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
..+.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 45567899999999999999999999999999999976 466899999999999999999999998 899999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999776443
No 185
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.46 E-value=7.2e-14 Score=127.19 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=69.5
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
.+.-|||+||++.+||++|+++|.+||+|.++++ ..+||||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999998 558999999999999999999999999999999999987
No 186
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.1e-14 Score=129.38 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=75.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45679999999999999999999999999999988643 3789999999999999999999999999999999999
Q ss_pred cCCchhh
Q 001976 435 RPGGARR 441 (987)
Q Consensus 435 ~~k~~Rr 441 (987)
.++..++
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9887654
No 187
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=125.78 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=71.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri-~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
....++|||+|||..+++++|+++|++||.|. +++ ....+|||||+|.+.++|++|++.|||..|.|++|+|.+++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34467999999999999999999999999996 443 3457899999999999999999999999999999999999986
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 188
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.45 E-value=1.3e-13 Score=131.38 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=74.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345679999999999999999999999999999998654 489999999999999999999999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
+.++..+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876644
No 189
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=9.9e-14 Score=125.81 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=73.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
....++|||+|||..+++++|+++|++||.|..+.....++|||||+|.+.++|++|++.|||..|.|++|+|.++.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34568999999999999999999999999998885555678999999999999999999999999999999999998876
Q ss_pred h
Q 001976 439 A 439 (987)
Q Consensus 439 ~ 439 (987)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 190
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=125.78 Aligned_cols=83 Identities=19% Similarity=0.398 Sum_probs=74.6
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
...+.++|||+|||.++|+++|+++|++||.|..++. +++.+|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4557899999999999999999999999999954443 677899999999999999999999999999999999999987
Q ss_pred CCCC
Q 001976 352 KDNP 355 (987)
Q Consensus 352 k~~~ 355 (987)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 191
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.8e-14 Score=129.57 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=74.1
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
+.+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345689999999999999999999999999999876 466799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001976 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987653
No 192
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=129.74 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ .+.++|||||+|.+.++|++|++.|+|..+.|++|.|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45567899999999999999999999999999999987 345789999999999999999999999999999999999
Q ss_pred cCCC
Q 001976 349 SIPK 352 (987)
Q Consensus 349 a~pk 352 (987)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9765
No 193
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.45 E-value=1.7e-13 Score=129.05 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=70.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||.++++++|+++|++||.|.+|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999998754 478999999999999999999999999999999999
Q ss_pred cc
Q 001976 434 SR 435 (987)
Q Consensus 434 a~ 435 (987)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.45 E-value=1.4e-13 Score=131.19 Aligned_cols=84 Identities=18% Similarity=0.448 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556799999999999999999999999999999986 5677999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999776543
No 195
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=2e-13 Score=125.93 Aligned_cols=79 Identities=25% Similarity=0.499 Sum_probs=73.4
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~ 353 (987)
..+.++|||+|||.++|+++|+++|++||+|..|++ .++||||+|.+.++|++|++.|++..|.|++|.|.++.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 356799999999999999999999999999999988 37899999999999999999999999999999999998876
Q ss_pred CC
Q 001976 354 NP 355 (987)
Q Consensus 354 ~~ 355 (987)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 196
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=4.7e-14 Score=129.99 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=71.7
Q ss_pred ccceeeecCCC------CCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCC-cEE
Q 001976 362 QGTLVVFNLDS------SVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQI 429 (987)
Q Consensus 362 ~~tLfV~NLp~------~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~G-r~L 429 (987)
.++|||+|||. ++++++|+++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 999999999999999999999873 367999999999999999999999999999 999
Q ss_pred EEEeccCCc
Q 001976 430 KLEASRPGG 438 (987)
Q Consensus 430 kV~~a~~k~ 438 (987)
+|.++.+++
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 197
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=132.96 Aligned_cols=84 Identities=20% Similarity=0.402 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567799999999999999999999999999999976 4667999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887654
No 198
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=4.7e-14 Score=129.98 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=72.1
Q ss_pred CCcEEEEccCCC------CCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccc-cc
Q 001976 276 PSRTLFVRNINS------NVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR-RK 343 (987)
Q Consensus 276 ~srtLfVgNLP~------~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G-r~ 343 (987)
..++|||+|||. ++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999986 47899999999999999999999999999999 99
Q ss_pred ccccccCCC
Q 001976 344 LDIHYSIPK 352 (987)
Q Consensus 344 L~V~~a~pk 352 (987)
|.|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998654
No 199
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=128.83 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=73.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHH---HhhcccCcEEEEEec--------ccccceEEEEeCCHHHHHHHHHHccCccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLr---elFs~fG~I~sVkit--------gksrGfAFV~F~d~e~A~kAl~~LnG~~i~G 341 (987)
.....++|||+|||+++++++|+ ++|++||+|..|++. ++++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999762 2456999999999999999999999999999
Q ss_pred ccccccccCCCCC
Q 001976 342 RKLDIHYSIPKDN 354 (987)
Q Consensus 342 r~L~V~~a~pk~~ 354 (987)
++|.|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988753
No 200
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=122.73 Aligned_cols=80 Identities=18% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...+.++|||+|||.++|+++|+++|++||.|..+++. ++||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34567999999999999999999999999999999983 669999999999999999999999999999999999877
Q ss_pred CCC
Q 001976 353 DNP 355 (987)
Q Consensus 353 ~~~ 355 (987)
...
T Consensus 82 ~~~ 84 (90)
T 2dnp_A 82 QKK 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 201
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.9e-14 Score=127.62 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=75.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhc-cCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCe-eCCcEEEEEe
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSD-VAGKQIKLEA 433 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~-fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~-I~Gr~LkV~~ 433 (987)
....+|||+|||.++++++|+++|++ ||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||.. |.|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 35679999999999999999999999 999999998654 57899999999999999999999999 9999999999
Q ss_pred ccCCchhh
Q 001976 434 SRPGGARR 441 (987)
Q Consensus 434 a~~k~~Rr 441 (987)
+.++..++
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98877544
No 202
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.8e-13 Score=126.19 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccc-----cccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-----RKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G-----r~L~V~ 347 (987)
.....++|||+|||.++|+++|+++|++||+|..|++... |||||+|.+.++|++||+.||+..|.| +.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999988433 999999999999999999999999999 999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99887654
No 203
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=132.77 Aligned_cols=83 Identities=16% Similarity=0.338 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE--EEe-----cccccceEEEEeCCHHHHHHHHHHccCc----ccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--IYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PLR 340 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--Vki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~----~i~ 340 (987)
....+.++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|++.|+|. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 45567899999999999999999999999999966 654 678999999999999 999999999999 999
Q ss_pred cccccccccCCCCCC
Q 001976 341 RRKLDIHYSIPKDNP 355 (987)
Q Consensus 341 Gr~L~V~~a~pk~~~ 355 (987)
|++|.|.++.++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999887543
No 204
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.9e-13 Score=122.91 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=73.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhccc--CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQF--GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~f--G~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
...+.++|||+|||.++++++|+++|++| |.|..+++ .+|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44567999999999999999999999999 99999987 58899999999999999999999999999999999998
Q ss_pred CCCCC
Q 001976 351 PKDNP 355 (987)
Q Consensus 351 pk~~~ 355 (987)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2cpd_A 88 PVDKD 92 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 205
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=126.20 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=69.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe------cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki------tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
.....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445679999999999999999999999999 999986 4667999999999999999999 89999999999999
Q ss_pred cccCCCC
Q 001976 347 HYSIPKD 353 (987)
Q Consensus 347 ~~a~pk~ 353 (987)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997754
No 206
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.4e-13 Score=125.36 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=72.1
Q ss_pred CCCCCcEEEEccCCC-CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 273 ~e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
...+.++|||+|||. ++++++|+++|++||+|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 345789999999998 9999999999999999999998 489999999999999999999999999999999999977
Q ss_pred CCCC
Q 001976 352 KDNP 355 (987)
Q Consensus 352 k~~~ 355 (987)
+...
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6544
No 207
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=127.12 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=73.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
...++|||+|||..+++++|+++|++||.|.+|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45679999999999999999999999999999988754 46899999999999999999999999999999999998
Q ss_pred CCchh
Q 001976 436 PGGAR 440 (987)
Q Consensus 436 ~k~~R 440 (987)
....+
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65533
No 208
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=1.8e-13 Score=122.00 Aligned_cols=76 Identities=28% Similarity=0.388 Sum_probs=70.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
..++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999988643 4889999999999999999 899999999999999998
Q ss_pred CC
Q 001976 436 PG 437 (987)
Q Consensus 436 ~k 437 (987)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 209
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=127.36 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=74.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcE----EEEEe-cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I----~sVki-tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++|+++|+++|++||.| ..+++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34577999999999999999999999999998 44443 78899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 210
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=1.8e-13 Score=126.48 Aligned_cols=78 Identities=24% Similarity=0.435 Sum_probs=72.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999876 467899999999999999999999999999999999998
Q ss_pred cC
Q 001976 349 SI 350 (987)
Q Consensus 349 a~ 350 (987)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 211
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=121.28 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=65.7
Q ss_pred CcEEEEccCCCCC------ChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccc-cccc
Q 001976 277 SRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDI 346 (987)
Q Consensus 277 srtLfVgNLP~~v------TEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr-~L~V 346 (987)
+++|||+|||..+ ++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4789999999999 77999999999999999986 567899999999999999999999999999999 8887
Q ss_pred c
Q 001976 347 H 347 (987)
Q Consensus 347 ~ 347 (987)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 212
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.4e-13 Score=127.82 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=73.7
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
.+...++|||+|||..+++++|+++|++||.|..|++..+ +++||||+|.+.++|++||+.||+ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3456789999999999999999999999999999999754 578999999999999999999998 8999999999
Q ss_pred eccCCch
Q 001976 433 ASRPGGA 439 (987)
Q Consensus 433 ~a~~k~~ 439 (987)
++.++..
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9987653
No 213
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=126.67 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=73.4
Q ss_pred CCCCCcEEEEccCCCCC------ChHHHHHhhcccCcEEEEEe---cccccceEEEEeCCHHHHHHHHHHccCcccccc-
Q 001976 273 GEHPSRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR- 342 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~v------TEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr- 342 (987)
.....++|||+|||..+ |+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 44557999999999999 78999999999999999986 567899999999999999999999999999999
Q ss_pred cccccccCCCC
Q 001976 343 KLDIHYSIPKD 353 (987)
Q Consensus 343 ~L~V~~a~pk~ 353 (987)
+|.|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999986543
No 214
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=1.7e-13 Score=128.37 Aligned_cols=80 Identities=26% Similarity=0.524 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
....+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456678999999999999999999999999999999984 89999999999999999999999999999999999987
Q ss_pred CCC
Q 001976 352 KDN 354 (987)
Q Consensus 352 k~~ 354 (987)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 215
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=127.51 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=74.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEE--------EEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--------EIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~--------~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
....++|||+|||..+++++|+++|++||.|. .|++..+ .+|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44678999999999999999999999999998 5887653 4789999999999999999999999999
Q ss_pred CcEEEEEeccCCchh
Q 001976 426 GKQIKLEASRPGGAR 440 (987)
Q Consensus 426 Gr~LkV~~a~~k~~R 440 (987)
|++|+|.+++++..+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987644
No 216
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=129.50 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
..++|||+|||.++++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999998754 479999999999999999999999999999999999987
Q ss_pred Cch
Q 001976 437 GGA 439 (987)
Q Consensus 437 k~~ 439 (987)
+..
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 217
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.43 E-value=2.7e-13 Score=124.33 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.9
Q ss_pred CCCCCcEEEEccCCC-CCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 273 ~e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
...+.++|||+|||. ++++++|+++|++||.|..+++ .+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 455789999999998 9999999999999999999998 489999999999999999999999999999999999876
Q ss_pred C
Q 001976 352 K 352 (987)
Q Consensus 352 k 352 (987)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 218
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=131.30 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=73.9
Q ss_pred ccccceeeecCCCCCCHHHHH----HHhhccCCEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLr----elFs~fG~I~~Vri~~--~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. .++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346799999999999999876 6999999999998864 5789999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 001976 434 SRPGGARR 441 (987)
Q Consensus 434 a~~k~~Rr 441 (987)
++++..+.
T Consensus 107 a~~~~~~~ 114 (127)
T 2a3j_A 107 SETPQSQV 114 (127)
T ss_dssp CCCCCHHH
T ss_pred ccCcchhc
Confidence 99877543
No 219
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=124.92 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=72.4
Q ss_pred CCCcEEEEccCCCCCChHHHH----HhhcccCcEEEEEec--ccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVkit--gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
...++|||+|||.++++++|+ ++|++||+|..|++. ...+|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999 999999999999873 22289999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001976 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
+.+...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987654
No 220
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=126.02 Aligned_cols=82 Identities=15% Similarity=0.300 Sum_probs=74.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
.....++|||+|||.++++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 345679999999999999999999999999999998843 4999999999999999999999999999999999999877
Q ss_pred CCC
Q 001976 353 DNP 355 (987)
Q Consensus 353 ~~~ 355 (987)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 221
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=2.1e-13 Score=123.70 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=74.2
Q ss_pred ccccceeeecCCCCCCHHHHH----HHhhccCCEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLr----elFs~fG~I~~Vri~~--~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
.+.++|||+|||..+++++|+ ++|++||.|..|++.. ..+|||||+|.+.++|.+|++.|||..+.|++|+|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999 9999999999999863 3579999999999999999999999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987643
No 222
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1e-13 Score=130.28 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=71.8
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...++|||+|||.++++++|+++|++||.|..|++ .+.+|||||+|.+.++|++|++.|||..|.|++|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35689999999999999999999999999999998 458899999999999999999999999999999999998654
No 223
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=124.10 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=70.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~--------Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~ 425 (987)
....++|||+|||.++++++|+++|++||.|.. |++..+ ++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999999998 887643 4789999999999999999999999999
Q ss_pred CcEEEEEecc
Q 001976 426 GKQIKLEASR 435 (987)
Q Consensus 426 Gr~LkV~~a~ 435 (987)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 224
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.43 E-value=4.7e-14 Score=127.13 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=65.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccC--CEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG--~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
.+|||+|||.++++++|+++|++|| .|.+|+++. .++|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999998864 357899999999999999999999999999999999998
Q ss_pred CCch
Q 001976 436 PGGA 439 (987)
Q Consensus 436 ~k~~ 439 (987)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8653
No 225
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=123.90 Aligned_cols=83 Identities=22% Similarity=0.442 Sum_probs=75.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe--cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
...+.++|||+|||.++++++|+++|+.|+.|..+.. +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4457899999999999999999999999988777753 67789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 001976 351 PKDNP 355 (987)
Q Consensus 351 pk~~~ 355 (987)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 226
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.9e-13 Score=125.15 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=71.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccc--------c
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPL--------R 340 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i--------~ 340 (987)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4456799999999999999999999999999999976 466889999999999999999999999999 4
Q ss_pred cccccccccCCC
Q 001976 341 RRKLDIHYSIPK 352 (987)
Q Consensus 341 Gr~L~V~~a~pk 352 (987)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 677888887754
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.43 E-value=6e-13 Score=126.66 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=73.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 345679999999999999999999999999999998754 5789999999999999999999999999999999999
Q ss_pred cCCc
Q 001976 435 RPGG 438 (987)
Q Consensus 435 ~~k~ 438 (987)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8754
No 228
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=3.3e-13 Score=124.23 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=72.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++|| |..|+++.+ .+|||||+|.+.++|++|+ .|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 999998744 4689999999999999999 7999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9987643
No 229
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.43 E-value=2e-13 Score=121.69 Aligned_cols=76 Identities=22% Similarity=0.454 Sum_probs=70.6
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
..++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|+ .|++..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999975 5677999999999999999999 899999999999999987
Q ss_pred CC
Q 001976 351 PK 352 (987)
Q Consensus 351 pk 352 (987)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 230
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=124.67 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQHKHNHKFIEFYDIRAAETALRTLNR-SDVAGKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG-~~I~Gr~LkV~~a~~k 437 (987)
...++|||+|||.++++++|+++|++||. |..+.+. +++||||+|.+.++|++|++.||| ..|.|++|+|++++++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 34679999999999999999999999999 6656553 589999999999999999999999 9999999999999987
Q ss_pred chh
Q 001976 438 GAR 440 (987)
Q Consensus 438 ~~R 440 (987)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 231
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=2.9e-13 Score=131.76 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=71.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcE-EEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeccCCc
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 438 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~-aFVeF~d~edA~kAL~~LNG~~I~G--r~LkV~~a~~k~ 438 (987)
-.|||.||+..+|+++|+++|++||+|.+|++..+.+++ |||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 468899999999999999999999999999988777888 9999999999999999999999988 999999999865
No 232
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.8e-13 Score=124.67 Aligned_cols=77 Identities=29% Similarity=0.407 Sum_probs=71.6
Q ss_pred ccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 360 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 360 ~~~~tLfV~NLp~-~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
.+.++|||+|||. .+++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4567999999998 99999999999999999999984 7999999999999999999999999999999999998765
Q ss_pred h
Q 001976 439 A 439 (987)
Q Consensus 439 ~ 439 (987)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 233
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=124.33 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=72.5
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCc-EEEEEecccccceEEEEeCCHHHHHHHHHHccC-cccccccccccccCC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYTACKHRGFVMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIP 351 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~-I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG-~~i~Gr~L~V~~a~p 351 (987)
..+.++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.|+| ..+.|++|.|.++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 346799999999999999999999999999 666665 5789999999999999999999999 999999999999988
Q ss_pred CCCC
Q 001976 352 KDNP 355 (987)
Q Consensus 352 k~~~ 355 (987)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 234
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.6e-13 Score=121.05 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=71.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
...++|||+|| ++++++|+++|++||+|..|++. ..++||||+|.+.++|++|++.|||..|.|++|+|.|++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 45679999996 89999999999999999999985 5689999999999999999999999999999999999998764
Q ss_pred h
Q 001976 440 R 440 (987)
Q Consensus 440 R 440 (987)
+
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 235
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.42 E-value=4e-13 Score=132.90 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=74.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||.|||..+++++|+++|++||+|..|+++.+ .++||||+|.+.++|++||+.||+..|.|++|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999998643 5689999999999999999999999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 986643
No 236
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=5.4e-14 Score=133.62 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=71.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||.++++++|+++|++||.|.+|++.. .++|||||+|.+.++|++|+ .|||..|.|++|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3467999999999999999999999999999998864 35889999999999999999 79999999999999999
Q ss_pred cCCc
Q 001976 435 RPGG 438 (987)
Q Consensus 435 ~~k~ 438 (987)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 237
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.3e-13 Score=125.13 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=73.9
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCc-EEEEEec------ccccceEEEEeCCHHHHHHHHHHcc--Cccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYTA------CKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLD 345 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~-I~sVkit------gksrGfAFV~F~d~e~A~kAl~~Ln--G~~i~Gr~L~ 345 (987)
.+.++|||+|||.++++++|+++|++||. |..+.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46799999999999999999999999998 9999763 4789999999999999999999996 5899999999
Q ss_pred ccccCCCCCC
Q 001976 346 IHYSIPKDNP 355 (987)
Q Consensus 346 V~~a~pk~~~ 355 (987)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887654
No 238
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.42 E-value=1.4e-13 Score=130.37 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=72.4
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccC-cEEEEEe-cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG-~I~sVki-tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
....++|||+|||+++++++|+++|++|| +|..+++ ..+++|||||+|.+.++|++|++.|||..|.|++|.|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 9999988 467899999999999999999999999999999999999864
Q ss_pred C
Q 001976 352 K 352 (987)
Q Consensus 352 k 352 (987)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 239
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=130.63 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=72.1
Q ss_pred ccccceeeecCCCC-CCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC--CeeCCcEEEEEeccC
Q 001976 360 ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRP 436 (987)
Q Consensus 360 ~~~~tLfV~NLp~~-vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG--~~I~Gr~LkV~~a~~ 436 (987)
.+.++|||+|||++ +++++|+++|++||+|.+|+++. .+|||||+|.+.++|++|++.||+ ..|.|++|+|.|+++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 45679999999998 99999999999999999999875 589999999999999999998864 569999999999987
Q ss_pred Cchh
Q 001976 437 GGAR 440 (987)
Q Consensus 437 k~~R 440 (987)
+...
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6643
No 240
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.42 E-value=3.8e-13 Score=124.34 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=70.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
...++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45679999999999999999999999999999988743 47899999999999999999999999999999999985
No 241
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.42 E-value=3.1e-13 Score=126.68 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=73.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~--~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
..++|||+|||..+++++|+++|++||.|..|++.. ..+|||||+|.+.++|.+|++.|||..+.|+.|+|.|+.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 457999999999999999999999999999999864 357999999999999999999999999999999999998765
Q ss_pred hh
Q 001976 439 AR 440 (987)
Q Consensus 439 ~R 440 (987)
..
T Consensus 87 ~~ 88 (115)
T 3lqv_A 87 AF 88 (115)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 242
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=124.44 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.....++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3446789999999999999999999999999865432 56789999999999999999999999999999999999
Q ss_pred ccCCC
Q 001976 348 YSIPK 352 (987)
Q Consensus 348 ~a~pk 352 (987)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98643
No 243
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=124.03 Aligned_cols=81 Identities=30% Similarity=0.470 Sum_probs=70.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri-~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
....++|||+|||..+++++|+++|++||.|.-++. ....++||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345789999999999999999999999999843322 2346899999999999999999999999999999999999987
Q ss_pred ch
Q 001976 438 GA 439 (987)
Q Consensus 438 ~~ 439 (987)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 244
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.42 E-value=2.8e-13 Score=120.65 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=69.2
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..+.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999976 47789999999999999999995 68889999999998
Q ss_pred cc
Q 001976 348 YS 349 (987)
Q Consensus 348 ~a 349 (987)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 245
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.42 E-value=1.1e-13 Score=125.01 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345699999999999999999999999999875543 467899999999999999999999999999999999998
Q ss_pred cC
Q 001976 349 SI 350 (987)
Q Consensus 349 a~ 350 (987)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 246
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.4e-13 Score=125.05 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=73.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEcC------CCCcEEEEEECCHHHHHHHHHHhC--CCeeCCcEEE
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQ------HKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIK 430 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~~Vri~~------~skG~aFVeF~d~edA~kAL~~LN--G~~I~Gr~Lk 430 (987)
...++|||+|||..+++++|+++|++||. |.+|+++. .++|||||+|.+.++|++|++.|| +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34679999999999999999999999998 99999872 468999999999999999999996 5899999999
Q ss_pred EEeccCCchh
Q 001976 431 LEASRPGGAR 440 (987)
Q Consensus 431 V~~a~~k~~R 440 (987)
|.|++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987643
No 247
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=124.53 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=71.8
Q ss_pred ccccceeeecCCCCC------CHHHHHHHhhccCCEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCeeCCc-EE
Q 001976 360 ANQGTLVVFNLDSSV------STEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QI 429 (987)
Q Consensus 360 ~~~~tLfV~NLp~~v------TeedLrelFs~fG~I~~Vri~~---~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr-~L 429 (987)
...++|||+|||..+ ++++|+++|++||.|..|++.. .++|||||+|.+.++|.+|++.|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 7899999999999999999873 3579999999999999999999999999998 99
Q ss_pred EEEeccCCc
Q 001976 430 KLEASRPGG 438 (987)
Q Consensus 430 kV~~a~~k~ 438 (987)
+|.++...+
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999997643
No 248
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.41 E-value=4.3e-13 Score=125.04 Aligned_cols=77 Identities=23% Similarity=0.490 Sum_probs=72.0
Q ss_pred CCCCcEEEEccCCCC-CChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 274 EHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 274 e~~srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
....++|||+|||.+ +++++|+++|++||+|..|++ .+|||||+|.+.++|++|++.|++..|.|++|.|.++.+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 345689999999999 999999999999999999999 7899999999999999999999999999999999999754
Q ss_pred C
Q 001976 353 D 353 (987)
Q Consensus 353 ~ 353 (987)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.41 E-value=4.1e-13 Score=132.81 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=76.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457799999999999999999999999999999987 46789999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99876543
No 250
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=126.29 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=69.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~------skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
....++|||+|||.++++++|+++|++|| |.+|++..+ ++|||||+|.+.++|.+|+ .|||..|+|++|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 999998754 4789999999999999999 899999999999999
Q ss_pred eccCCc
Q 001976 433 ASRPGG 438 (987)
Q Consensus 433 ~a~~k~ 438 (987)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998864
No 251
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.8e-13 Score=120.58 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...+.++|||+|| ++|+++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4457799999996 8999999999999999999998 688999999999999999999999999999999999999877
Q ss_pred CCC
Q 001976 353 DNP 355 (987)
Q Consensus 353 ~~~ 355 (987)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 252
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.2e-13 Score=125.82 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=72.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
....++|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+. ++|..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999998753 68999999999999999999 9999999999999998
Q ss_pred cCCc
Q 001976 435 RPGG 438 (987)
Q Consensus 435 ~~k~ 438 (987)
..-.
T Consensus 87 ~~~~ 90 (103)
T 1s79_A 87 DDYF 90 (103)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7643
No 253
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4e-13 Score=120.82 Aligned_cols=79 Identities=11% Similarity=0.240 Sum_probs=72.3
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.....++|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567999999999999999999999999 8988876 56789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 001976 349 SIPKD 353 (987)
Q Consensus 349 a~pk~ 353 (987)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 254
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.7e-13 Score=122.12 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=72.1
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~--~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
.....++|||.|||..+++++|+++|+.|+.|.-++.. ...++||||+|.+.++|++||+.|||..|.|++|+|.+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 44567899999999999999999999999766555432 2357899999999999999999999999999999999999
Q ss_pred CCchh
Q 001976 436 PGGAR 440 (987)
Q Consensus 436 ~k~~R 440 (987)
++..+
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87754
No 255
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.3e-13 Score=127.92 Aligned_cols=81 Identities=11% Similarity=0.261 Sum_probs=73.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++||+. ++..|.|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345679999999999999999999999999999998754 478999999999999999997 99999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
+.++..+
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9987653
No 256
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.1e-13 Score=121.45 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 272 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34567799999999999999999999999999999976 47789999999999999999998 477999999999
Q ss_pred cccCCCCCC
Q 001976 347 HYSIPKDNP 355 (987)
Q Consensus 347 ~~a~pk~~~ 355 (987)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887654
No 257
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=7.4e-13 Score=120.02 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=71.7
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEE-EcCC-CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR-DTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vr-i~~~-skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
...++|||+|||..+++++|+++|++||.|..|+ ++.+ ..+.|||+|.+.++|++|++.|||..|.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3467999999999999999999999999999995 6654 3456999999999999999999999999999999999987
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 258
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=1.1e-13 Score=124.15 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=67.8
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.+ |++|++.|+|..+.|++|.|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999976 3678999999999999 99999999999999999999999876
Q ss_pred CCC
Q 001976 353 DNP 355 (987)
Q Consensus 353 ~~~ 355 (987)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 259
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.6e-13 Score=126.43 Aligned_cols=76 Identities=13% Similarity=0.322 Sum_probs=69.9
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
....++|||+|||.++|+++|+++|++||+|.+|++ .+.++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 446799999999999999999999999999999976 36789999999999999999998 9999999999999876
Q ss_pred C
Q 001976 350 I 350 (987)
Q Consensus 350 ~ 350 (987)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 260
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=5e-13 Score=127.22 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=75.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4467799999999999999999999999999999976 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.++...
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 261
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=3.8e-13 Score=125.95 Aligned_cols=82 Identities=16% Similarity=0.395 Sum_probs=70.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4456799999999999999999999999999999986 4778999999999999999999876 599999999999
Q ss_pred ccCCCCCC
Q 001976 348 YSIPKDNP 355 (987)
Q Consensus 348 ~a~pk~~~ 355 (987)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877543
No 262
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=5.8e-13 Score=124.67 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=70.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.+ +..|.|++|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999998754 4789999999999999999976 5999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987643
No 263
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.40 E-value=2.3e-13 Score=117.88 Aligned_cols=70 Identities=19% Similarity=0.427 Sum_probs=65.5
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
+|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999976 56789999999999999999997 9999999999999875
No 264
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.2e-13 Score=125.65 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=72.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCE----EEEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I----~~Vri~-~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.| ..+++. +..+|||||+|.+.++|++|++.|||..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 456799999999999999999999999998 555543 457899999999999999999999999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 987654
No 265
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8e-13 Score=122.45 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE-EEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s-Vki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.....++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456799999999999999999999999999987 655 678899999999999999999986 9999999999999
Q ss_pred ccCCCC
Q 001976 348 YSIPKD 353 (987)
Q Consensus 348 ~a~pk~ 353 (987)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 887654
No 266
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=7.6e-13 Score=119.70 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=64.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCe--eCCcEEEEEeccC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRP 436 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~--I~Gr~LkV~~a~~ 436 (987)
.....+|||+|||.++++++|+++|++||.|.+|+++.+++|||||+|.+.++|++ |++.. +.|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 34567999999999999999999999999999999998899999999999999983 56665 4699999999998
Q ss_pred Cch
Q 001976 437 GGA 439 (987)
Q Consensus 437 k~~ 439 (987)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 267
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.40 E-value=3.7e-13 Score=120.72 Aligned_cols=76 Identities=14% Similarity=0.317 Sum_probs=70.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~ 438 (987)
..++|||+|||.++++++|+++|++| .|.+|++. .++|||||+|.+.++|++|++.|||..+.|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999999999999999999 99999885 678999999999999999999999999999999999987643
No 268
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=135.96 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=71.1
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccC--cEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG--~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...++|||+|||.++|+++|+++|++|| +|..|++ +++++|||||+|.+.++|++||+.|+|..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999976 67889999999999999999999999999999999999
Q ss_pred ccCCC
Q 001976 348 YSIPK 352 (987)
Q Consensus 348 ~a~pk 352 (987)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98654
No 269
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4.9e-13 Score=123.37 Aligned_cols=81 Identities=26% Similarity=0.414 Sum_probs=73.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||+|..|+++.+ .+|||||+|.+.++|++||+. |+..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 456689999999999999999999999999999998654 468999999999999999998 99999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
+.++..+
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9987754
No 270
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=8.4e-13 Score=127.23 Aligned_cols=77 Identities=29% Similarity=0.495 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4557899999999999999999999999999999986 46789999999999999999999999999999999998
Q ss_pred cc
Q 001976 348 YS 349 (987)
Q Consensus 348 ~a 349 (987)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 271
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=123.03 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEE-EEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcE----E
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR-EIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ----I 429 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~-~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~----L 429 (987)
...++|||+|||..+++++|+++|++||.|. .|+++.+ ++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567999999999999999999999999999 9988644 4689999999999999999999999999999 9
Q ss_pred EEEeccCCc
Q 001976 430 KLEASRPGG 438 (987)
Q Consensus 430 kV~~a~~k~ 438 (987)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 272
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.39 E-value=3.8e-13 Score=134.41 Aligned_cols=81 Identities=10% Similarity=0.159 Sum_probs=73.0
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccC--CEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG--~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
..++|||+|||.++++++|+++|++|| .|.+|+++. .++|||||+|.+.++|++||+.|||..|.|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 356999999999999999999999999 999999864 3578999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 001976 434 SRPGGARR 441 (987)
Q Consensus 434 a~~k~~Rr 441 (987)
+.++..++
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 99876444
No 273
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.5e-13 Score=123.63 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=69.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||..+++++|+++|++||.|..++++ +..+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 346789999999999999999999999999765443 235799999999999999999999999999999999998
Q ss_pred cCC
Q 001976 435 RPG 437 (987)
Q Consensus 435 ~~k 437 (987)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 864
No 274
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.39 E-value=7.2e-13 Score=117.97 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=68.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++ +++..|.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999998643 47899999999999999996 688999999999998
Q ss_pred c
Q 001976 434 S 434 (987)
Q Consensus 434 a 434 (987)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 275
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.4e-13 Score=123.56 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=71.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCee--------CC
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDV--------AG 426 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I--------~G 426 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345679999999999999999999999999999998654 468999999999999999999999999 57
Q ss_pred cEEEEEeccCC
Q 001976 427 KQIKLEASRPG 437 (987)
Q Consensus 427 r~LkV~~a~~k 437 (987)
++|.|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999875
No 276
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=126.32 Aligned_cols=76 Identities=25% Similarity=0.410 Sum_probs=70.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999998654 589999999999999999999999999999999998
Q ss_pred c
Q 001976 434 S 434 (987)
Q Consensus 434 a 434 (987)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 277
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=2.1e-13 Score=124.91 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=72.1
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE----ecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk----itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
..+.++|||+|||.++|+++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 44679999999999999999999999999876621 257889999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 001976 350 IPKDNP 355 (987)
Q Consensus 350 ~pk~~~ 355 (987)
.++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 278
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-13 Score=121.73 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=69.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
..++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|+.|+|.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4679999999999999999999999999999998654 47899999999999999999999999999999988765
Q ss_pred C
Q 001976 436 P 436 (987)
Q Consensus 436 ~ 436 (987)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 279
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=3.5e-13 Score=120.91 Aligned_cols=76 Identities=16% Similarity=0.367 Sum_probs=70.9
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...++|||+|||+++++++|+++|++| +|..+++. +++|||||+|.+.++|++|++.|+|..+.|++|+|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 356899999999999999999999999 99999884 88999999999999999999999999999999999998543
No 280
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.38 E-value=3.2e-13 Score=116.96 Aligned_cols=70 Identities=13% Similarity=0.276 Sum_probs=65.4
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
+|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++ |||..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999988643 47899999999999999998 9999999999999885
No 281
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=7.4e-13 Score=133.63 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=70.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeccCCc
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 438 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-skG~aFVeF~d~edA~kAL~~LNG~~I~G--r~LkV~~a~~k~ 438 (987)
..+|||+||++.+++++|+++|++||+|++|++..+ .++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 457999999999999999999999999999998644 57899999999999999999999999965 999999999864
No 282
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=6.5e-13 Score=125.48 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=67.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcE-----EEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ-----IKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~-----LkV~~a~ 435 (987)
...+|||.|||.++++++|+++|++||+|..|+++.+ +||||+|.+.++|++||+.|||..|.|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 4579999999999999999999999999999999876 99999999999999999999999999998 7777776
Q ss_pred CCc
Q 001976 436 PGG 438 (987)
Q Consensus 436 ~k~ 438 (987)
++.
T Consensus 93 ~~~ 95 (115)
T 3beg_B 93 PRS 95 (115)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 283
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=126.68 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=68.5
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcE-EEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEeccCCc
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 438 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~-aFVeF~d~edA~kAL~~LNG~~I~G--r~LkV~~a~~k~ 438 (987)
.|||.||+..+++++|+++|++||+|++|++..+ .|| |||+|.+.++|.+|++.|||..|.| ++|+|.+++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999999999999999999999999998764 586 9999999999999999999999987 699999999865
No 284
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.38 E-value=2.4e-13 Score=122.92 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=67.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
..++|||+|||.++++++|+++|++||.|..++++. ..++||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457999999999999999999999999997665542 357899999999999999999999999999999999986
Q ss_pred C
Q 001976 436 P 436 (987)
Q Consensus 436 ~ 436 (987)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 285
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=117.30 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
...++|||+|||.++|+++|+++|++||+|..|........||||+|.+.++|++|++ |++..|.|+.|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999985432222299999999999999999 999999999999999876654
Q ss_pred C
Q 001976 355 P 355 (987)
Q Consensus 355 ~ 355 (987)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 286
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.38 E-value=1.7e-13 Score=122.84 Aligned_cols=75 Identities=20% Similarity=0.415 Sum_probs=67.3
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.+ |++|++.|||..+.|++|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999998743 5789999999999 99999999999999999999999886
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 287
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.7e-13 Score=125.25 Aligned_cols=81 Identities=17% Similarity=0.431 Sum_probs=73.8
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 344699999999999999999999999999999876 467899999999999999999986 99999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887654
No 288
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=2.5e-13 Score=117.83 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=66.3
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999998875 46789999999999999999999999 9999999999876
No 289
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-13 Score=127.40 Aligned_cols=78 Identities=18% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
+...++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999987 3678999999999999999999 9999999999999999
Q ss_pred cCCC
Q 001976 349 SIPK 352 (987)
Q Consensus 349 a~pk 352 (987)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8654
No 290
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.6e-13 Score=126.09 Aligned_cols=80 Identities=14% Similarity=0.292 Sum_probs=71.6
Q ss_pred CCCCCcEEEE--ccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc-----cccccc
Q 001976 273 GEHPSRTLFV--RNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL-----RRRKLD 345 (987)
Q Consensus 273 ~e~~srtLfV--gNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i-----~Gr~L~ 345 (987)
...++++||| +||+.++++++|+++|++||+|..|.+. ..||||||+|.+.++|++|++.|||+.+ .|++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4457899999 6699999999999999999999999883 4689999999999999999999999988 789999
Q ss_pred ccccCCCC
Q 001976 346 IHYSIPKD 353 (987)
Q Consensus 346 V~~a~pk~ 353 (987)
|.|+....
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99986443
No 291
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=118.03 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=71.7
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE-e-cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-T-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-i-tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
....++|||+|||+++++++|+++|++||.|..++ + ..+..+.|||+|.+.++|++|++.|+|..|.|++|.|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 4 344556699999999999999999999999999999999988
Q ss_pred CC
Q 001976 352 KD 353 (987)
Q Consensus 352 k~ 353 (987)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 292
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.2e-12 Score=118.60 Aligned_cols=79 Identities=14% Similarity=0.322 Sum_probs=71.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++ ++..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345679999999999999999999999999999998654 46899999999999999999 57899999999999
Q ss_pred ccCCch
Q 001976 434 SRPGGA 439 (987)
Q Consensus 434 a~~k~~ 439 (987)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 998764
No 293
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=2.9e-13 Score=123.99 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=70.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~-----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||.++++++|+++|++||.|.. .++ +.++|||||+|.+.++|++|++ |||..|.|++|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999998866 222 3468999999999999999999 9999999999999999
Q ss_pred cCCchh
Q 001976 435 RPGGAR 440 (987)
Q Consensus 435 ~~k~~R 440 (987)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987654
No 294
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.37 E-value=8.5e-13 Score=132.11 Aligned_cols=85 Identities=20% Similarity=0.409 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 271 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
+....+.++|||+|||.++++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++||+.|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345567789999999999999999999999999999976 466799999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 001976 346 IHYSIPKDNP 355 (987)
Q Consensus 346 V~~a~pk~~~ 355 (987)
|.|+.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 295
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.36 E-value=3.4e-13 Score=130.06 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=72.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEE--EEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCC----eeCCc
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS----DVAGK 427 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~--Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~----~I~Gr 427 (987)
....++|||+|||.++++++|+++|++||.|.. |+++.+ ++|||||+|.+. +|.+|++.|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999977 888654 589999999999 999999999999 99999
Q ss_pred EEEEEeccCCc
Q 001976 428 QIKLEASRPGG 438 (987)
Q Consensus 428 ~LkV~~a~~k~ 438 (987)
+|+|.+++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998865
No 296
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.3e-13 Score=125.50 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=70.5
Q ss_pred ccccceee--ecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCee-----CCcEEEEE
Q 001976 360 ANQGTLVV--FNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV-----AGKQIKLE 432 (987)
Q Consensus 360 ~~~~tLfV--~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I-----~Gr~LkV~ 432 (987)
.+.++||| +||+..+++++|+++|++||+|.+|.+.. .+|||||+|.+.++|++|++.|||+++ .|++|+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 34678999 66999999999999999999999998875 489999999999999999999999998 78999999
Q ss_pred eccCCc
Q 001976 433 ASRPGG 438 (987)
Q Consensus 433 ~a~~k~ 438 (987)
|++...
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 987543
No 297
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.36 E-value=4.8e-13 Score=118.00 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=64.1
Q ss_pred cceeeecCCCCC------CHHHHHHHhhccCCEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCeeCCc-EEEE
Q 001976 363 GTLVVFNLDSSV------STEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKL 431 (987)
Q Consensus 363 ~tLfV~NLp~~v------TeedLrelFs~fG~I~~Vri~~---~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr-~LkV 431 (987)
++|||+|||..+ ++++|+++|++||.|.+|++.. .++|||||+|.+.++|++|++.|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 7799999999999999999873 3589999999999999999999999999999 8876
No 298
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=118.00 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=70.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
...++|||+|||.++++++|+++|++| .|..|+++.+ ++|||||+|.+.++|++|++ |||..|.|++|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456799999999999999999999999 9999988643 47899999999999999999 99999999999999998
Q ss_pred CCc
Q 001976 436 PGG 438 (987)
Q Consensus 436 ~k~ 438 (987)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 299
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.36 E-value=9.7e-13 Score=124.94 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=71.8
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999876 5778999999999999999999 799999999999999987
Q ss_pred CCCC
Q 001976 351 PKDN 354 (987)
Q Consensus 351 pk~~ 354 (987)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 300
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.36 E-value=1.4e-12 Score=126.94 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=72.3
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccce-EEEEeCCHHHHHHHHHHccCccccc--ccccccccCCC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPK 352 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGf-AFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~pk 352 (987)
.--.|||+||++.+|+++|+++|++||+|..|++..+.+|| |||+|.+.++|++|++.|||..|.| +.|+|+|++++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 34567799999999999999999999999999886667888 9999999999999999999999988 89999999887
Q ss_pred CCC
Q 001976 353 DNP 355 (987)
Q Consensus 353 ~~~ 355 (987)
...
T Consensus 107 ~l~ 109 (130)
T 3zzy_A 107 SLN 109 (130)
T ss_dssp SCC
T ss_pred cee
Confidence 543
No 301
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=118.08 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=68.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
..++|||+|||.++++++|+++|++||.|.+|.+......||||+|.+.++|++|++ |||..|.|++|+|.++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 456999999999999999999999999999984433322299999999999999999 999999999999999887653
No 302
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5.3e-13 Score=125.68 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=73.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I-~~Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
...++|||+|||.++++++|+++|++||.| ..|+++. .++|||||+|.+.++|++||+. |+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456799999999999999999999999999 7888864 3689999999999999999996 999999999999999
Q ss_pred cCCchhh
Q 001976 435 RPGGARR 441 (987)
Q Consensus 435 ~~k~~Rr 441 (987)
.++..++
T Consensus 92 ~~~~~~~ 98 (114)
T 2cpy_A 92 TLEDMRE 98 (114)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8876554
No 303
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.1e-13 Score=128.14 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=70.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEE-E----ecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-Y----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV-k----itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
.....++|||+|||+++|+++|+++|++||.|..+ . .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566999999999999999999999999998652 2 267889999999999999999998 99999999999999
Q ss_pred ccCCC
Q 001976 348 YSIPK 352 (987)
Q Consensus 348 ~a~pk 352 (987)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88643
No 304
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=4.8e-13 Score=116.10 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=66.3
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
++|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999988654 47899999999999999999999 9999999999987
No 305
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=119.49 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=67.8
Q ss_pred CCCcE-EEEccCCCCCChHH----HHHhhccc-CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 275 HPSRT-LFVRNINSNVEDSE----LKALFEQF-GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 275 ~~srt-LfVgNLP~~vTEed----LrelFs~f-G~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.|+.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.||+|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 35666 99999999999998 55899999 599988 23 9999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+..+.+.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9877654
No 306
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=126.95 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=73.0
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEE--------EE--ecccccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IY--TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--------Vk--itgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~ 343 (987)
..+.++|||+|||.++|+++|+++|++||.|.. ++ .+++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456799999999999999999999999998865 32 36889999999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 001976 344 LDIHYSIPKDNP 355 (987)
Q Consensus 344 L~V~~a~pk~~~ 355 (987)
|.|.++.+....
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999775543
No 307
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.9e-12 Score=119.93 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEE-EEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~-Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
....+|||+|||.++++++|+++|++||.|.. |+++. .++|||||+|.+.++|++||+. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45679999999999999999999999999987 87753 4689999999999999999996 999999999999999
Q ss_pred cCCch
Q 001976 435 RPGGA 439 (987)
Q Consensus 435 ~~k~~ 439 (987)
.+++.
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 87653
No 308
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.6e-12 Score=120.59 Aligned_cols=79 Identities=10% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.....++|||+|||+++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++|| .+++..|.|+.|.|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 7755 5778999999999999999999 5899999999999998
Q ss_pred cCCCC
Q 001976 349 SIPKD 353 (987)
Q Consensus 349 a~pk~ 353 (987)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 309
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=5.5e-13 Score=125.56 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcE-EEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI-RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I-~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...+.++|||+|||.++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 66655 577899999999999999999976 9999999999999
Q ss_pred ccCCCC
Q 001976 348 YSIPKD 353 (987)
Q Consensus 348 ~a~pk~ 353 (987)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=130.40 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=75.0
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEE--------EEe-----cccccceEEEEeCCHHHHHHHHHHccCccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--------Vki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i 339 (987)
...+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3457799999999999999999999999999988 654 467899999999999999999999999999
Q ss_pred ccccccccccCCCCCC
Q 001976 340 RRRKLDIHYSIPKDNP 355 (987)
Q Consensus 340 ~Gr~L~V~~a~pk~~~ 355 (987)
.|++|.|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999887654
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.33 E-value=1.9e-12 Score=117.15 Aligned_cols=78 Identities=22% Similarity=0.467 Sum_probs=63.4
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcc--cccccccccccC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 350 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~--i~Gr~L~V~~a~ 350 (987)
...+..+|||+|||+++|+++|+++|++||+|.+|++...+||||||+|.+.++|++ +++.. +.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999877799999999999999984 45554 458999999998
Q ss_pred CCCC
Q 001976 351 PKDN 354 (987)
Q Consensus 351 pk~~ 354 (987)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 312
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=2.6e-12 Score=129.65 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=72.5
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-cccccceEEEEeCCHHHHHHHHHHccCccccc--ccccccccCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIP 351 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~p 351 (987)
....+|||+||++.+|+++|+++|++||+|..|++ .+..+|||||+|.+.++|++|++.|+|..|.| ++|+|.|+.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 34467999999999999999999999999999987 34568899999999999999999999999965 9999999988
Q ss_pred CCCC
Q 001976 352 KDNP 355 (987)
Q Consensus 352 k~~~ 355 (987)
+...
T Consensus 124 ~~l~ 127 (164)
T 1sjr_A 124 TSLN 127 (164)
T ss_dssp SSCC
T ss_pred Cccc
Confidence 7543
No 313
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.33 E-value=6.6e-13 Score=130.09 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=71.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC---EEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~---I~~Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
....+|||+|||.++|+++|+++|++||. |..|+++. .++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34678999999999999999999999999 77887764 357899999999999999999 99999999999999
Q ss_pred eccCCchh
Q 001976 433 ASRPGGAR 440 (987)
Q Consensus 433 ~a~~k~~R 440 (987)
++.+++..
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99876543
No 314
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.32 E-value=7.3e-13 Score=114.51 Aligned_cols=70 Identities=20% Similarity=0.476 Sum_probs=64.8
Q ss_pred EEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 279 tLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999976 46789999999999999999997 5899999999999864
No 315
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=7.9e-13 Score=118.29 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=67.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCchh
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~R 440 (987)
..++|||+|||.++++++|+++|++||.|.+|+++.+++|||||+|.+.++|++|+.. ...+.|++|+|.++.++..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 4579999999999999999999999999999999988899999999999999764321 23459999999999987643
No 316
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=3.3e-12 Score=113.33 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=67.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhcc----C-------CEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIY----G-------EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~f----G-------~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~ 428 (987)
...++|||+|||.++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 346799999999999999999999999 8 9999998765 899999999999999999 89999999999
Q ss_pred EEEEe
Q 001976 429 IKLEA 433 (987)
Q Consensus 429 LkV~~ 433 (987)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 317
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=7.5e-13 Score=125.74 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=71.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC---EEEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~---I~~Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
...++|||+|||.++++++|+++|+.||. |..|+++. .++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34678999999999999999999999999 88888764 357899999999999999999 99999999999999
Q ss_pred eccCCch
Q 001976 433 ASRPGGA 439 (987)
Q Consensus 433 ~a~~k~~ 439 (987)
++.+++.
T Consensus 94 ~a~~~~~ 100 (118)
T 2db1_A 94 KSHRTEM 100 (118)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9986653
No 318
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.32 E-value=2.1e-12 Score=121.95 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=62.9
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
...++|||+|||.++++++|+++|++||+|..|++... |||||+|.+.++|++||+.||+..|.|++|.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 45689999999999999999999999999999998433 999999999999999999999999999994443
No 319
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=4.8e-13 Score=122.79 Aligned_cols=81 Identities=20% Similarity=0.483 Sum_probs=71.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3446799999999999999999999999999999976 46689999999999999999997 99999999999999
Q ss_pred cCCCCCC
Q 001976 349 SIPKDNP 355 (987)
Q Consensus 349 a~pk~~~ 355 (987)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 8776543
No 320
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.32 E-value=3e-12 Score=124.83 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=71.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEE--cCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~--------Vri--~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~L 429 (987)
...++|||+|||..+++++|+++|++||.|.. +++ .+.++|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35679999999999999999999999998865 332 35678999999999999999999999999999999
Q ss_pred EEEeccCCchhh
Q 001976 430 KLEASRPGGARR 441 (987)
Q Consensus 430 kV~~a~~k~~Rr 441 (987)
+|.++++...+.
T Consensus 123 ~V~~a~~~~~~~ 134 (143)
T 3egn_A 123 VVQFARSARPKQ 134 (143)
T ss_dssp EEEECCCSCC--
T ss_pred EEEECCCCCCcc
Confidence 999998765443
No 321
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=1.8e-12 Score=115.02 Aligned_cols=72 Identities=18% Similarity=0.393 Sum_probs=67.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhccc----C-------cEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~f----G-------~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~ 343 (987)
.+.++|||+|||.++++++|+++|++| | +|..+++ .+.+|||||+|.+.++|++|+ .|+|..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 457999999999999999999999999 8 9999988 456999999999999999999 99999999999
Q ss_pred ccccc
Q 001976 344 LDIHY 348 (987)
Q Consensus 344 L~V~~ 348 (987)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99864
No 322
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=121.75 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=70.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCc---EEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~---I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
.....++|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..+.|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456799999999999999999999999998 788765 36789999999999999999998 999999999999
Q ss_pred ccccCCC
Q 001976 346 IHYSIPK 352 (987)
Q Consensus 346 V~~a~pk 352 (987)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9987643
No 323
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.3e-12 Score=116.80 Aligned_cols=79 Identities=22% Similarity=0.442 Sum_probs=68.4
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
.+.++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|+.. ...+.|++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 35799999999999999999999999999999998777899999999999999865421 3456899999999988765
Q ss_pred C
Q 001976 355 P 355 (987)
Q Consensus 355 ~ 355 (987)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 324
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=8e-13 Score=125.54 Aligned_cols=78 Identities=8% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCc---EEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~---I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 346799999999999999999999999998 777765 46789999999999999999998 9999999999999
Q ss_pred cccCCC
Q 001976 347 HYSIPK 352 (987)
Q Consensus 347 ~~a~pk 352 (987)
.++.++
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 325
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=4.1e-12 Score=135.59 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=79.1
Q ss_pred cCcccccccccccccCCCCCCCcccccccceeeecCCCCC---------CHHHHHHHhhccCCEEEEEEcCCCCcEEEEE
Q 001976 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV---------STEELHQIFGIYGEIREIRDTQHKHNHKFIE 405 (987)
Q Consensus 335 nG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v---------TeedLrelFs~fG~I~~Vri~~~skG~aFVe 405 (987)
+...+.|+.....+..............++|||+||+..+ ++++|+++|++||+|.+|+++. ++|||||+
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~ 185 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVK 185 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEE
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEE
Confidence 3344556655554443332222234567899999999998 7999999999999999999886 58999999
Q ss_pred ECCHHHHHHHHHHhCCCee------------CCcEEEEEeccCCchh
Q 001976 406 FYDIRAAETALRTLNRSDV------------AGKQIKLEASRPGGAR 440 (987)
Q Consensus 406 F~d~edA~kAL~~LNG~~I------------~Gr~LkV~~a~~k~~R 440 (987)
|.+.++|+.|++.|+|..| .|+.|.|.||+.+...
T Consensus 186 F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 186 FKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 9999999999999999999 8999999999976543
No 326
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-13 Score=128.59 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=73.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~--------Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
...++|||+|||..+++++|+++|++||.|.. |+++.+ ++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 777643 57899999999999999999999999999
Q ss_pred cEEEEEeccCCchh
Q 001976 427 KQIKLEASRPGGAR 440 (987)
Q Consensus 427 r~LkV~~a~~k~~R 440 (987)
++|+|.+++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987643
No 327
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=4.3e-12 Score=122.59 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=68.1
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccce-EEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCC
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN 354 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGf-AFV~F~d~e~A~kAl~~LnG~~i~G--r~L~V~~a~pk~~ 354 (987)
..|||+||++.+|+++|+++|++||+|..|++..+ .|| |||+|.+.++|++|++.|||..|.| +.|+|.|+.++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 34679999999999999999999999999987444 486 9999999999999999999999987 6899999988754
No 328
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.30 E-value=7.8e-13 Score=123.15 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=72.7
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC---EEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~---I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
....+|||+|||.++++++|+++|+.||. |..|+++.+ ++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45678999999999999999999999998 888888643 67899999999999999999 99999999999999
Q ss_pred eccCCchhh
Q 001976 433 ASRPGGARR 441 (987)
Q Consensus 433 ~a~~k~~Rr 441 (987)
++.+++...
T Consensus 88 ~a~~~~~~~ 96 (107)
T 2lmi_A 88 EINNEDVDA 96 (107)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 998766443
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=116.83 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=64.8
Q ss_pred cceeeecCCCCCCHHH----HHHHhhcc-CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 363 GTLVVFNLDSSVSTEE----LHQIFGIY-GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 363 ~tLfV~NLp~~vTeed----LrelFs~f-G~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
+.|||.|||..+++++ |+++|++| |+|.+|. .|+|||+|.+.++|.+|++.|||..+.||+|+|.||+.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 3499999999999888 55899999 5999982 399999999999999999999999999999999999986
Q ss_pred c
Q 001976 438 G 438 (987)
Q Consensus 438 ~ 438 (987)
.
T Consensus 85 s 85 (96)
T 2diu_A 85 R 85 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 330
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=1.6e-12 Score=137.53 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=70.2
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccC--cEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG--~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..++|||+|||.++|+++|+++|++|| +|..|++ +++++|||||+|.+.++|++||+.|+++.|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999976 678899999999999999999999999999999999999
Q ss_pred cCC
Q 001976 349 SIP 351 (987)
Q Consensus 349 a~p 351 (987)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 331
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=6.8e-13 Score=126.59 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=70.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEE-EEc----CCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~V-ri~----~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
....+|||+|||.++++++|+++|++||.|..+ .+. +..+|||||+|.+.++|++||+ |||..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345799999999999999999999999998763 222 3357899999999999999999 9999999999999999
Q ss_pred cCCchhh
Q 001976 435 RPGGARR 441 (987)
Q Consensus 435 ~~k~~Rr 441 (987)
.+++..+
T Consensus 102 ~~~~~~~ 108 (124)
T 1wel_A 102 TKKGMLE 108 (124)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8876433
No 332
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=3.6e-12 Score=121.94 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
...++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..|.|++|+|.|++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 35679999996 69999999999999999999986 5789999999999999999999999999999999999998764
Q ss_pred h
Q 001976 440 R 440 (987)
Q Consensus 440 R 440 (987)
+
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 333
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.29 E-value=8.8e-13 Score=129.71 Aligned_cols=120 Identities=10% Similarity=0.047 Sum_probs=69.9
Q ss_pred ceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001976 315 GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (987)
Q Consensus 315 GfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri 394 (987)
++||.+|..++.+..++..+... ..|...--..... ..........+|||+|||.++++++|+++|++|| |.+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 57788888888777777654433 2222221111111 1112234467999999999999999999999999 668888
Q ss_pred cCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 395 TQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 395 ~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
+.+ ++|||||+|.+.++|++|| .+|+..|.|+.|+|.++.+++.
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 743 5889999999999999999 6999999999999999988664
No 334
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=7.1e-12 Score=129.26 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHc--cCcccccccccccccCCCCCCCc-----ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc
Q 001976 323 DIRAARNAMKAL--QNKPLRRRKLDIHYSIPKDNPSE-----KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395 (987)
Q Consensus 323 d~e~A~kAl~~L--nG~~i~Gr~L~V~~a~pk~~~~~-----~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~ 395 (987)
+.+.+..|++.. ....+.+....|.....+..+.. .....++|||+|||.++++++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667888888877 45566666666655532222111 23356799999999999999999999999999999887
Q ss_pred C----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCC
Q 001976 396 Q----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (987)
Q Consensus 396 ~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k 437 (987)
. ..+|||||+|.+.++|++|++.+ +..+.|++|.|.++..-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 4 35799999999999999999855 45999999999997753
No 335
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=119.54 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=68.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
...+|||+|||.++++++|+++|++| .|..|+++.+ ++|||||+|.+.++|++|| .||+..|+|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35699999999999999999999999 8999998743 5899999999999999999 5999999999999998875
Q ss_pred C
Q 001976 437 G 437 (987)
Q Consensus 437 k 437 (987)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 336
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.29 E-value=1.4e-12 Score=127.72 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=69.9
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCc---EEEEEe----cccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~---I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
.....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456789999999999999999999999999 677654 47789999999999999999998 999999999999
Q ss_pred ccccCC
Q 001976 346 IHYSIP 351 (987)
Q Consensus 346 V~~a~p 351 (987)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 988753
No 337
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.28 E-value=4.2e-12 Score=129.28 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=73.7
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999987 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 001976 349 SIPK 352 (987)
Q Consensus 349 a~pk 352 (987)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8754
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.28 E-value=4.7e-12 Score=121.16 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=72.5
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk 352 (987)
...+.++|||+|| ++|+++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3456899999996 6999999999999999999998 588999999999999999999999999999999999999876
Q ss_pred CC
Q 001976 353 DN 354 (987)
Q Consensus 353 ~~ 354 (987)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 339
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.28 E-value=1.4e-12 Score=112.77 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=64.8
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
+|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++ +++..+.|++|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999988643 57899999999999999999 5999999999999875
No 340
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.28 E-value=1.7e-12 Score=137.39 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=72.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccC--CEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG--~I~~Vri~~~-----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
..++|||+||+..+++++|+++|++|| +|++|+|+.+ ++|||||+|.+.++|++||+.|||..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999998643 578999999999999999999999999999999999
Q ss_pred ccCCchh
Q 001976 434 SRPGGAR 440 (987)
Q Consensus 434 a~~k~~R 440 (987)
+++....
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 9876543
No 341
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.27 E-value=2.2e-12 Score=118.37 Aligned_cols=79 Identities=19% Similarity=0.375 Sum_probs=71.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 001976 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a 434 (987)
....++|||+|||..+++++|+++|++||.|..|+++.+ .+|||||+|.+.++|++|++ ++..++|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345679999999999999999999999999999998653 57899999999999999999 999999999999999
Q ss_pred cCCch
Q 001976 435 RPGGA 439 (987)
Q Consensus 435 ~~k~~ 439 (987)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87653
No 342
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3.3e-12 Score=118.47 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=68.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
....+|||+|||.++++++|+++|++||.| +|+++.+ ++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 456799999999999999999999999955 8887643 57899999999999999995 89999999999999988
Q ss_pred CCc
Q 001976 436 PGG 438 (987)
Q Consensus 436 ~k~ 438 (987)
+.+
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 343
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.26 E-value=2.9e-12 Score=125.97 Aligned_cols=80 Identities=9% Similarity=0.190 Sum_probs=69.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
.....++|||+|||+++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|| .+++..|.|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 668865 4678999999999999999999 7999999999999998
Q ss_pred cCCCCC
Q 001976 349 SIPKDN 354 (987)
Q Consensus 349 a~pk~~ 354 (987)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 344
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.25 E-value=8e-12 Score=127.25 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=73.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
...++|||.|||..+++++|+++|++||.|+.|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|+|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34679999999999999999999999999999998753 57999999999999999999999999999999999998
Q ss_pred CCc
Q 001976 436 PGG 438 (987)
Q Consensus 436 ~k~ 438 (987)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 754
No 345
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=119.04 Aligned_cols=75 Identities=7% Similarity=0.176 Sum_probs=67.7
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
...++|||+|||+++|+++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.||.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345899999999999999999999999 8888876 4678999999999999999999 699999999999997764
Q ss_pred C
Q 001976 351 P 351 (987)
Q Consensus 351 p 351 (987)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.23 E-value=8.4e-12 Score=120.82 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCCCCcEEEEccCCCCCChHHHHHhhcccCcEE--EEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--TIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~--sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
.....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++ +++..|.||.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 566 7765 47789999999999999999997 5789999999999
Q ss_pred cccCC
Q 001976 347 HYSIP 351 (987)
Q Consensus 347 ~~a~p 351 (987)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=3.2e-11 Score=112.87 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=67.8
Q ss_pred ccccceeeecCCC-----CCCHHHHHHHhhccCCEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 001976 360 ANQGTLVVFNLDS-----SVSTEELHQIFGIYGEIREIRDTQ------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (987)
Q Consensus 360 ~~~~tLfV~NLp~-----~vTeedLrelFs~fG~I~~Vri~~------~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~ 428 (987)
.+.++|+|.|+.. +-++++|+++|++||+|.+|+++. .++|+|||+|.+.++|.+|++.|||+.|.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999953 236899999999999999998863 35899999999999999999999999999999
Q ss_pred EEEEeccC
Q 001976 429 IKLEASRP 436 (987)
Q Consensus 429 LkV~~a~~ 436 (987)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 348
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.9e-12 Score=122.56 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=66.7
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcE----EEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I----~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
...++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. ++..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999975 35543 578899999999999999999985 999999999999
Q ss_pred cccCC
Q 001976 347 HYSIP 351 (987)
Q Consensus 347 ~~a~p 351 (987)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87643
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=114.74 Aligned_cols=72 Identities=17% Similarity=0.322 Sum_probs=61.1
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----c---ccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----t---gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
...++|||+|||+++|+++|+++|++||+|. +.+ + ++++|||||+|.+.++|++|++.|++ +.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4579999999999999999999999999999 543 2 57899999999999999999998843 56666666
Q ss_pred ccc
Q 001976 347 HYS 349 (987)
Q Consensus 347 ~~a 349 (987)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.21 E-value=1.4e-11 Score=131.56 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=71.5
Q ss_pred CCCCcEEEEccCCCCC---------ChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccc-----
Q 001976 274 EHPSRTLFVRNINSNV---------EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL----- 339 (987)
Q Consensus 274 e~~srtLfVgNLP~~v---------TEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i----- 339 (987)
....++|||+||+..+ +|++|+++|++||+|.+|++ ...+|||||+|.+.++|+.|+++|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4578999999999998 79999999999999999988 46799999999999999999999999999
Q ss_pred -------ccccccccccCCCCCC
Q 001976 340 -------RRRKLDIHYSIPKDNP 355 (987)
Q Consensus 340 -------~Gr~L~V~~a~pk~~~ 355 (987)
.|+.|.|.|+..+..+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876554
No 351
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.20 E-value=1.1e-11 Score=119.92 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=68.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEE--EEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--EIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~--~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
...++|||+|||+++++++|+++|++| .|. .|+++.+ ++|||||+|.+.++|++||+ +++..|+|+.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346789999999999999999999999 676 8888743 68999999999999999999 588999999999999
Q ss_pred ccCCc
Q 001976 434 SRPGG 438 (987)
Q Consensus 434 a~~k~ 438 (987)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87644
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.9e-11 Score=111.99 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=69.7
Q ss_pred cccccceeeecCCCCCC-----------HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001976 359 DANQGTLVVFNLDSSVS-----------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 359 ~~~~~tLfV~NLp~~vT-----------eedLrelFs~fG~I~~Vri~-~~skG~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
....++|+|.||....+ +++|+++|++||.|..|.+. ...+|||||+|.+.++|++|++.|||..|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34678999999944332 58999999999999999764 3468999999999999999999999999999
Q ss_pred cEEEEEeccCCc
Q 001976 427 KQIKLEASRPGG 438 (987)
Q Consensus 427 r~LkV~~a~~k~ 438 (987)
++|+|.++.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998865
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.6e-11 Score=111.54 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=71.8
Q ss_pred CCCCCcEEEEccCCCCCC-----------hHHHHHhhcccCcEEEEEe-cccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001976 273 GEHPSRTLFVRNINSNVE-----------DSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~vT-----------EedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~ 340 (987)
...++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|||..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456789999999954432 6899999999999999976 4557999999999999999999999999999
Q ss_pred cccccccccCCCCC
Q 001976 341 RRKLDIHYSIPKDN 354 (987)
Q Consensus 341 Gr~L~V~~a~pk~~ 354 (987)
|++|.|.++.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987654
No 354
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4.2e-12 Score=122.30 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=70.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCE----EEEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I----~~Vri~~----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
...+|||+|||+++++++|+++|++||.| ..|+++. .++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45789999999999999999999999975 4676653 3578999999999999999995 9999999999999
Q ss_pred eccCCchhhc
Q 001976 433 ASRPGGARRF 442 (987)
Q Consensus 433 ~a~~k~~Rrl 442 (987)
.+.+++.++.
T Consensus 101 ~a~~~e~~~~ 110 (123)
T 2dha_A 101 RSTAAEVQQV 110 (123)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9987665543
No 355
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.18 E-value=2.7e-11 Score=139.80 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=74.3
Q ss_pred CCCCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001976 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (987)
Q Consensus 274 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~ 348 (987)
..+.++|||+|||.+||+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999976 577899999999999999999999999999999999999
Q ss_pred cCCCC
Q 001976 349 SIPKD 353 (987)
Q Consensus 349 a~pk~ 353 (987)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98654
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.5e-11 Score=112.44 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=66.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~--------~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~ 432 (987)
..++|||+|||.++++++|+++|++||.|. +.++. .++|||||+|.+.++|++||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467999999999999999999999999999 76653 458999999999999999999994 4788888888
Q ss_pred eccCCchhh
Q 001976 433 ASRPGGARR 441 (987)
Q Consensus 433 ~a~~k~~Rr 441 (987)
.+.+...+.
T Consensus 84 ~~~~~~~~~ 92 (114)
T 2dnl_A 84 SSPTIKDKP 92 (114)
T ss_dssp CCSSSCSEE
T ss_pred cCCCcCCCe
Confidence 766554443
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.14 E-value=8.8e-11 Score=109.90 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=68.1
Q ss_pred CCCcEEEEccCCC-----CCChHHHHHhhcccCcEEEEEec------ccccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001976 275 HPSRTLFVRNINS-----NVEDSELKALFEQFGDIRTIYTA------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 275 ~~srtLfVgNLP~-----~vTEedLrelFs~fG~I~sVkit------gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~ 343 (987)
.++++|+|+|+.. +-++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999963 23789999999999999999762 467999999999999999999999999999999
Q ss_pred ccccccCC
Q 001976 344 LDIHYSIP 351 (987)
Q Consensus 344 L~V~~a~p 351 (987)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.13 E-value=1e-10 Score=109.40 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=67.6
Q ss_pred ccccceeeecC--CCCCC--------HHHHHHHhhccCCEEEEEEcCC-------CCcEEEEEECCHHHHHHHHHHhCCC
Q 001976 360 ANQGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQH-------KHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 360 ~~~~tLfV~NL--p~~vT--------eedLrelFs~fG~I~~Vri~~~-------skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
.+++.|+|.|+ |..+. +++|+++|++||+|.+|+++.+ ++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33443 3799999999999999998753 4799999999999999999999999
Q ss_pred eeCCcEEEEEeccCC
Q 001976 423 DVAGKQIKLEASRPG 437 (987)
Q Consensus 423 ~I~Gr~LkV~~a~~k 437 (987)
.++||+|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998753
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.08 E-value=1.3e-10 Score=119.74 Aligned_cols=75 Identities=13% Similarity=0.319 Sum_probs=67.5
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEe----cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
..++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..+.|++|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4589999999999999999999999999999976 3678999999999999999999754 5689999999987653
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=106.10 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccCCch
Q 001976 372 SSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (987)
Q Consensus 372 ~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~k~~ 439 (987)
..+++++|+++|++||+|.+|++++.++|||||+|.+.++|++|++.+++ +.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 57899999999999999999999988899999999999999999997554 6899999999987654
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.6e-11 Score=114.00 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=64.7
Q ss_pred cEEEEccC----CCCCChHHHHHhhcccCcEEEEEe-----cccccceEEEEeCC----HHH----HHHHHH--HccCcc
Q 001976 278 RTLFVRNI----NSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYD----IRA----ARNAMK--ALQNKP 338 (987)
Q Consensus 278 rtLfVgNL----P~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d----~e~----A~kAl~--~LnG~~ 338 (987)
++|||+|| |+.+++++|+++|++||+|.++.+ ++.++|||||+|.+ +++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999975 78999999999996 333 889988 789999
Q ss_pred cccccccccccC
Q 001976 339 LRRRKLDIHYSI 350 (987)
Q Consensus 339 i~Gr~L~V~~a~ 350 (987)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998653
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.02 E-value=1.3e-10 Score=108.44 Aligned_cols=68 Identities=28% Similarity=0.376 Sum_probs=58.4
Q ss_pred eecCCCCCCHHHHHHHh------------hccCCEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001976 367 VFNLDSSVSTEELHQIF------------GIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 367 V~NLp~~vTeedLrelF------------s~fG~I~~Vri~~~----skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
+.||+..+++++|++.| ++||+|.+|++..+ ++|||||+|.+.++|.+|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566666776666555 99999999999864 489999999999999999999999999999999
Q ss_pred EEec
Q 001976 431 LEAS 434 (987)
Q Consensus 431 V~~a 434 (987)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2e-10 Score=111.45 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=67.8
Q ss_pred cceeeecC----CCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEECC----HHH----HHHHHH--HhCCCe
Q 001976 363 GTLVVFNL----DSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYD----IRA----AETALR--TLNRSD 423 (987)
Q Consensus 363 ~tLfV~NL----p~~vTeedLrelFs~fG~I~~Vri~~-----~skG~aFVeF~d----~ed----A~kAL~--~LNG~~ 423 (987)
..|||+|| |+.+++++|+++|++||+|.+|+++. .++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 99999999999999999999998864 368999999996 333 899988 789999
Q ss_pred eCCcEEEEEeccCCchhh
Q 001976 424 VAGKQIKLEASRPGGARR 441 (987)
Q Consensus 424 I~Gr~LkV~~a~~k~~Rr 441 (987)
|.|++|+|.+-+.....+
T Consensus 83 I~Gr~irV~ln~~g~~~~ 100 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNN 100 (136)
T ss_dssp ETTEEEEEEECCTTHHHH
T ss_pred ecCcEEEEEECcccHHHH
Confidence 999999999988765433
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.00 E-value=5.7e-10 Score=106.71 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=65.9
Q ss_pred cccceeeecCC--CCC---CHHHHHHHhhccCCEEEEEEcCC---------CCcEEEEEECCHHHHHHHHHHhCCCeeCC
Q 001976 361 NQGTLVVFNLD--SSV---STEELHQIFGIYGEIREIRDTQH---------KHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (987)
Q Consensus 361 ~~~tLfV~NLp--~~v---TeedLrelFs~fG~I~~Vri~~~---------skG~aFVeF~d~edA~kAL~~LNG~~I~G 426 (987)
+.++|+|.|+- .++ -++||++.|++||+|.+|+++.+ ++|++||+|.+.++|.+|++.|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56789999983 222 36899999999999999988643 24899999999999999999999999999
Q ss_pred cEEEEEeccC
Q 001976 427 KQIKLEASRP 436 (987)
Q Consensus 427 r~LkV~~a~~ 436 (987)
|+|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.00 E-value=5.1e-10 Score=104.64 Aligned_cols=77 Identities=17% Similarity=0.375 Sum_probs=67.0
Q ss_pred CCCcEEEEccC--CCCCC--------hHHHHHhhcccCcEEEEEec-------ccccceEEEEeCCHHHHHHHHHHccCc
Q 001976 275 HPSRTLFVRNI--NSNVE--------DSELKALFEQFGDIRTIYTA-------CKHRGFVMISYYDIRAARNAMKALQNK 337 (987)
Q Consensus 275 ~~srtLfVgNL--P~~vT--------EedLrelFs~fG~I~sVkit-------gksrGfAFV~F~d~e~A~kAl~~LnG~ 337 (987)
.|++.|.|.|+ |.++. +++|++.|++||+|.+|++. ++++|+|||+|.+.++|++|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999998 44443 36899999999999999872 246899999999999999999999999
Q ss_pred ccccccccccccCC
Q 001976 338 PLRRRKLDIHYSIP 351 (987)
Q Consensus 338 ~i~Gr~L~V~~a~p 351 (987)
.+.||+|.|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.98 E-value=9.6e-10 Score=104.56 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=67.3
Q ss_pred ccccceeeecCC--CCC--------CHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHhCCCeeCCcE
Q 001976 360 ANQGTLVVFNLD--SSV--------STEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (987)
Q Consensus 360 ~~~~tLfV~NLp--~~v--------TeedLrelFs~fG~I~~Vri~~~-skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~ 428 (987)
.+.++|.|.|+= .+. -++||+++|++||.|.+|.+..+ .+|++||+|.+.++|.+|++.|||+.|+||+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346789999983 221 24689999999999999999765 4899999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001976 429 IKLEASRPGG 438 (987)
Q Consensus 429 LkV~~a~~k~ 438 (987)
|+|.|+....
T Consensus 85 i~v~~~~~~~ 94 (114)
T 3s6e_A 85 ITAAYVPLPT 94 (114)
T ss_dssp CEEEEECHHH
T ss_pred EEEEEEcHHH
Confidence 9999987543
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=7.1e-10 Score=124.12 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=67.0
Q ss_pred cccccceeeec--CCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCee---CCc--EEEE
Q 001976 359 DANQGTLVVFN--LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV---AGK--QIKL 431 (987)
Q Consensus 359 ~~~~~tLfV~N--Lp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I---~Gr--~LkV 431 (987)
..+..+|||+| |+..+++++|+++|++||+|++|.+.. +||||||+|.+.++|++|++.|||+++ .|+ .|+|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 34567999999 578999999999999999999998765 689999999999999999999999988 344 6888
Q ss_pred Eecc
Q 001976 432 EASR 435 (987)
Q Consensus 432 ~~a~ 435 (987)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8874
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.2e-09 Score=99.85 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=59.6
Q ss_pred CCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001976 287 SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (987)
Q Consensus 287 ~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~pk~~ 354 (987)
.++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|.|.|+.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 56999999999999999999999889999999999999999999987554 6799999999977654
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=6.8e-10 Score=124.30 Aligned_cols=76 Identities=16% Similarity=0.327 Sum_probs=66.5
Q ss_pred CCCCCcEEEEcc--CCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccc---cc--ccc
Q 001976 273 GEHPSRTLFVRN--INSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR---RR--KLD 345 (987)
Q Consensus 273 ~e~~srtLfVgN--LP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~---Gr--~L~ 345 (987)
...++++|||+| |+..+||++|+++|++||+|.+|++. ..||||||+|.+.++|++|++.|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 456889999999 57899999999999999999999883 47899999999999999999999999873 34 566
Q ss_pred cccc
Q 001976 346 IHYS 349 (987)
Q Consensus 346 V~~a 349 (987)
|.|.
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6665
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.92 E-value=3.4e-10 Score=105.58 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=60.0
Q ss_pred EccCCCCCChHHHHHhh------------cccCcEEEEEec----ccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 282 VRNINSNVEDSELKALF------------EQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 282 VgNLP~~vTEedLrelF------------s~fG~I~sVkit----gksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
+.+|+..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|++|++.|||+.+.||+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888888887766 999999999872 45799999999999999999999999999999999
Q ss_pred cccc
Q 001976 346 IHYS 349 (987)
Q Consensus 346 V~~a 349 (987)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.82 E-value=4.8e-09 Score=100.27 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCCcEEEEccCCC--CC---ChHHHHHhhcccCcEEEEEec---------ccccceEEEEeCCHHHHHHHHHHccCcccc
Q 001976 275 HPSRTLFVRNINS--NV---EDSELKALFEQFGDIRTIYTA---------CKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (987)
Q Consensus 275 ~~srtLfVgNLP~--~v---TEedLrelFs~fG~I~sVkit---------gksrGfAFV~F~d~e~A~kAl~~LnG~~i~ 340 (987)
.++++|+|+|+-. ++ -+++|++.|++||+|.+|++. ++.+|+|||+|.+.++|.+|++.|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999842 22 368999999999999999761 245699999999999999999999999999
Q ss_pred cccccccccC
Q 001976 341 RRKLDIHYSI 350 (987)
Q Consensus 341 Gr~L~V~~a~ 350 (987)
||.|.|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999874
No 372
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.82 E-value=8.2e-09 Score=94.50 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=73.7
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eecccccccc-eeEEEEEecCCchhhHHHHHHhcCCcccCCCCc-cE
Q 001976 813 TTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFI-YLPIDFKNKC-NVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSE-KV 889 (987)
Q Consensus 813 TTvMirNIPnk~t~~~L~~~id~~~~g~yDF~-YlpiDf~~~~-N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~-Kv 889 (987)
|.|+||++|..+|++.++++|... .++||+ |.|-+...+- -.+.|||||++++++..|.+.|+|+.|...+.. -.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 789999999999999999999875 478988 5788877664 468999999999999999999999999976544 48
Q ss_pred EEEEeecccC
Q 001976 890 ASLAYARIQG 899 (987)
Q Consensus 890 ~~v~yA~iQG 899 (987)
+.|.||-.|-
T Consensus 80 a~VE~AP~qk 89 (91)
T 1uw4_A 80 AIVEFAPFQK 89 (91)
T ss_dssp CEEEECSSCC
T ss_pred eEEEEcCCCc
Confidence 8999998873
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.78 E-value=1e-08 Score=97.56 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCCcEEEEccCCCCC----------ChHHHHHhhcccCcEEEEEecc-cccceEEEEeCCHHHHHHHHHHccCccccccc
Q 001976 275 HPSRTLFVRNINSNV----------EDSELKALFEQFGDIRTIYTAC-KHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (987)
Q Consensus 275 ~~srtLfVgNLP~~v----------TEedLrelFs~fG~I~sVkitg-ksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~ 343 (987)
.+++.|.++|+=..- -+++|++.|++||.|.+|++.. ..+|+|||+|.+.++|++|++.|||..+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578899999984322 2357899999999999998833 35899999999999999999999999999999
Q ss_pred ccccccC
Q 001976 344 LDIHYSI 350 (987)
Q Consensus 344 L~V~~a~ 350 (987)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999874
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=3.1e-08 Score=90.45 Aligned_cols=74 Identities=27% Similarity=0.407 Sum_probs=63.4
Q ss_pred ccccceeeecCCC----CCCH----HHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Q 001976 360 ANQGTLVVFNLDS----SVST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (987)
Q Consensus 360 ~~~~tLfV~NLp~----~vTe----edLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV 431 (987)
.+..||+|.-.+. .+-+ .+|.+.|.+||+|..+++..+. +||+|.+.++|.+||+ |||..++||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 4567888887762 3333 6799999999999999998753 9999999999999999 9999999999999
Q ss_pred EeccCC
Q 001976 432 EASRPG 437 (987)
Q Consensus 432 ~~a~~k 437 (987)
.++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999875
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=4.7e-08 Score=94.02 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=71.9
Q ss_pred ccccceeeecCCCC-CCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECC-HHHHHHHHHHhC--CCeeCCcEEEEEecc
Q 001976 360 ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYD-IRAAETALRTLN--RSDVAGKQIKLEASR 435 (987)
Q Consensus 360 ~~~~tLfV~NLp~~-vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d-~edA~kAL~~LN--G~~I~Gr~LkV~~a~ 435 (987)
.....|+|.||+.. ++.++|+++|++||+|.+|.+..+ ...|||+|.+ .++|.+|++.|| +..|.|..++++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 35678999999999 999999999999999999999876 4479999999 899999999995 778999999999888
Q ss_pred CCchhh
Q 001976 436 PGGARR 441 (987)
Q Consensus 436 ~k~~Rr 441 (987)
-.++++
T Consensus 95 GeeE~~ 100 (121)
T 1owx_A 95 GEVEKE 100 (121)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 766665
No 376
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.61 E-value=1.5e-08 Score=93.46 Aligned_cols=84 Identities=20% Similarity=0.356 Sum_probs=72.5
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eecccccccce-eEEEEEecCCchhhHHHHHHhcCCcccCCCCcc-E
Q 001976 813 TTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFI-YLPIDFKNKCN-VGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEK-V 889 (987)
Q Consensus 813 TTvMirNIPnk~t~~~L~~~id~~~~g~yDF~-YlpiDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K-v 889 (987)
-.|+||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ ...|||||++++++..|.+.|+|+.|..-+... .
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46999999999999999999987544 5777 68888877655 588999999999999999999999999776545 8
Q ss_pred EEEEeeccc
Q 001976 890 ASLAYARIQ 898 (987)
Q Consensus 890 ~~v~yA~iQ 898 (987)
+.|.||..|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 999999887
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.3e-07 Score=85.25 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=62.6
Q ss_pred ccccceeeecCCCC-----C-CH---HHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Q 001976 360 ANQGTLVVFNLDSS-----V-ST---EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (987)
Q Consensus 360 ~~~~tLfV~NLp~~-----v-Te---edLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~Lk 430 (987)
.+..||+|.-++.. + ++ .+|.+.|.+||+|..+++..+. +||+|.+.++|.+||+ |||..++||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45679999988743 2 21 5699999999999999998764 9999999999999999 999999999999
Q ss_pred EEeccC
Q 001976 431 LEASRP 436 (987)
Q Consensus 431 V~~a~~ 436 (987)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998654
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=6.4e-07 Score=86.14 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=63.8
Q ss_pred CCCCCcEEEEccCCCC-CChHHHHHhhcccCcEEEEEecccccceEEEEeCC-HHHHHHHHHHcc--Ccccccccccccc
Q 001976 273 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYD-IRAARNAMKALQ--NKPLRRRKLDIHY 348 (987)
Q Consensus 273 ~e~~srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d-~e~A~kAl~~Ln--G~~i~Gr~L~V~~ 348 (987)
.-.+.+.|||+||+.+ +++++|+++|++||+|..|.+ ......|||.|.+ .++|..|++.++ +..|.|..+.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 4457899999999999 999999999999999999987 3334479999999 899999999984 6778887766643
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=3.5e-07 Score=83.54 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCcEEEEccCC----CCCCh----HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001976 275 HPSRTLFVRNIN----SNVED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (987)
Q Consensus 275 ~~srtLfVgNLP----~~vTE----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V 346 (987)
.|..||+|.-.+ .++-+ .+|.+.|++||+|..+++.. +.+||+|.+.++|.+|++ |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 467889998877 24545 67889999999999999832 349999999999999997 9999999999999
Q ss_pred cccCCC
Q 001976 347 HYSIPK 352 (987)
Q Consensus 347 ~~a~pk 352 (987)
+.+.|.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 988653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.32 E-value=6.7e-07 Score=93.04 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCCHHHHHHHhhccCCEEEEEEc----C-----CCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 373 SVSTEELHQIFGIYGEIREIRDT----Q-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 373 ~vTeedLrelFs~fG~I~~Vri~----~-----~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
.-.+++|++.|++||+|.++.+. . ..+|++||+|.+.++|.+|++.|||+.++||.|.|.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34578999999999999999885 2 4578999999999999999999999999999999999764
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.09 E-value=3.7e-06 Score=87.44 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=56.2
Q ss_pred CChHHHHHhhcccCcEEEEEe---------cccccceEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001976 289 VEDSELKALFEQFGDIRTIYT---------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (987)
Q Consensus 289 vTEedLrelFs~fG~I~sVki---------tgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~ 350 (987)
-.+++|++.|++||+|.++++ +++.+|++||+|.+.++|++|++.|+|+.+.||.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 456899999999999999976 22788999999999999999999999999999999999874
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=3.5e-06 Score=77.45 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=60.6
Q ss_pred CCCcEEEEccCCCC-----CCh----HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccc
Q 001976 275 HPSRTLFVRNINSN-----VED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (987)
Q Consensus 275 ~~srtLfVgNLP~~-----vTE----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~ 345 (987)
.|..||+|.-++.+ +-+ .+|.+.|++||+|..+++... -+||+|.+.++|.+||+ |+|..+.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 57789999988753 333 568899999999999987322 29999999999999998 999999999999
Q ss_pred ccccC
Q 001976 346 IHYSI 350 (987)
Q Consensus 346 V~~a~ 350 (987)
|++..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98754
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.2e-05 Score=75.52 Aligned_cols=72 Identities=28% Similarity=0.301 Sum_probs=66.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhcc-----CCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIY-----GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~f-----G~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~ 433 (987)
..++|-+-|||..+++..|+.+.++| |.|+.|.+.++ -+=|+|+|.|...|.+|.-+|+|.+|.|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35799999999999999999999999 99999999887 44599999999999999999999999999999864
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0011 Score=61.66 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=73.2
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcc-----cCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQ-----FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~-----fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a 349 (987)
...++|.|.|||+++.++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++ -....|.+.+|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 34689999999999999999999987 25899998744 789999999999999995 4467888888888665
Q ss_pred CCCCCCCcccccccceeeecCCCCCC
Q 001976 350 IPKDNPSEKDANQGTLVVFNLDSSVS 375 (987)
Q Consensus 350 ~pk~~~~~~~~~~~tLfV~NLp~~vT 375 (987)
.++ ..+.|.+.+|++.++
T Consensus 82 ~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 PPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCCSCCCCCC
T ss_pred CCC--------CcceEeeecCCCCCC
Confidence 443 345899999998875
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00058 Score=64.27 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=64.1
Q ss_pred CCcEEEEccCCCCCChHHHHHhhccc-----CcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQF-----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~f-----G~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~ 347 (987)
..++|-+-|||..+++..|+.+.++| |+|+.|.+.. ..+=|+|+|.|...|-+|.-.|+|.+|.|++|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46899999999999999999999999 9999998833 44569999999999999998999999999999884
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.0029 Score=59.01 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=66.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhc-----cCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEecc
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGI-----YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~-----fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~ 435 (987)
...+|.|.|||+.++++.|.-.|+. =|+|..++..+ +-|+|+|.+.+.|++.|+ -....|.+.+|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 3568999999999999999999987 36899998765 789999999999999998 33678999999999988
Q ss_pred CCchhh
Q 001976 436 PGGARR 441 (987)
Q Consensus 436 ~k~~Rr 441 (987)
++..++
T Consensus 83 ~~~~~r 88 (104)
T 2dhx_A 83 PRAPAR 88 (104)
T ss_dssp CCCCCC
T ss_pred CCCcce
Confidence 877666
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.0014 Score=61.22 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=64.0
Q ss_pred ccceeeecCCCCC-C----HHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeccC
Q 001976 362 QGTLVVFNLDSSV-S----TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (987)
Q Consensus 362 ~~tLfV~NLp~~v-T----eedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~Gr~LkV~~a~~ 436 (987)
.++|+|.||+.++ . ++.++++|..|+++......+.-+ -..|.|.+.++|.+|-..|++..+.|++|+|-++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3589999998766 2 367899999999988876665323 478999999999999999999999999999999996
Q ss_pred Cc
Q 001976 437 GG 438 (987)
Q Consensus 437 k~ 438 (987)
-.
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.53 E-value=0.0074 Score=57.72 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=63.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEeccCCc
Q 001976 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQIKLEASRPGG 438 (987)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG~~I~G-r~LkV~~a~~k~ 438 (987)
.....|.|.+.|+.. ...|.+.|++||+|.+... ....++-.|+|.+..+|++||. .||..|+| -.|-|.+...+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCHH
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCHH
Confidence 446789999999985 6778889999999999886 3457899999999999999999 79999985 778888876544
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.37 E-value=0.0036 Score=58.48 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=63.2
Q ss_pred CcEEEEccCCCCC-Ch----HHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001976 277 SRTLFVRNINSNV-ED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (987)
Q Consensus 277 srtLfVgNLP~~v-TE----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~Gr~L~V~~a~p 351 (987)
.++|+|.||+.+| .. +.++++|..|+++.....- ++-.-..|.|.+.++|.+|-..|++..+.|++++|-|+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999999876 32 4668999999998887652 3333578999999999999999999999999999999885
Q ss_pred CC
Q 001976 352 KD 353 (987)
Q Consensus 352 k~ 353 (987)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.23 E-value=0.042 Score=50.19 Aligned_cols=65 Identities=5% Similarity=0.051 Sum_probs=53.3
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEe-ccc------ccceEEEEeCCHHHHHHHHHHccCcccccc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACK------HRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgk------srGfAFV~F~d~e~A~kAl~~LnG~~i~Gr 342 (987)
++|.|++||+.+||+++.+.+..+.++..... .|+ .-.-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 57999999999999999999999987665432 222 224799999999999999999999887643
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.55 E-value=0.083 Score=48.83 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=46.4
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHcc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~Ln 335 (987)
..+.++| ++|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 3467777 99999999999999999996554344 35589999999999999998764
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.29 E-value=0.032 Score=54.10 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=57.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEE-EEEc----------------C--CCCcEEEEEECCHHHHHHHHHHhCCC
Q 001976 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDT----------------Q--HKHNHKFIEFYDIRAAETALRTLNRS 422 (987)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~~-Vri~----------------~--~skG~aFVeF~d~edA~kAL~~LNG~ 422 (987)
...|.|.+.|+... ..+.+.|++||.|.+ +... + ...++..|+|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34688899977665 456678999999977 2111 1 135688999999999999999 8999
Q ss_pred eeCCcEEEEEeccC
Q 001976 423 DVAGKQIKLEASRP 436 (987)
Q Consensus 423 ~I~Gr~LkV~~a~~ 436 (987)
.|+|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999999864
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.70 E-value=0.12 Score=49.30 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccCccccc-ccccccc
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-RKLDIHY 348 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG~~i~G-r~L~V~~ 348 (987)
..+-|.|-+.|+.. ...|.+.|++||+|.+... .....+..|.|.+..+|++||. .||..|.| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 46889999999874 6778889999999999887 3456799999999999999995 79988874 4444443
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.36 E-value=0.075 Score=49.21 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=45.1
Q ss_pred cEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHcc
Q 001976 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335 (987)
Q Consensus 278 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~Ln 335 (987)
+.++| ++|+.+.-.||.++|+.||.|.--.+ .-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999995554444 45689999999999999998764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.90 E-value=0.043 Score=63.64 Aligned_cols=56 Identities=11% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHH
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMK 332 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~ 332 (987)
..|+|||. .|..+++.+|.++|++||+|.++.......-||.|+|.+.++++.++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45899998 799999999999999999999998855555699999999999997764
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.30 E-value=0.052 Score=62.97 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=44.8
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHH
Q 001976 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALR 417 (987)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~ 417 (987)
..+.|+|. .+..+++.+|.+.|++||.|.++....+...|+.|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45789997 799999999999999999999998888777899999999999997765
No 397
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.04 E-value=0.22 Score=46.00 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=44.1
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhC
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 420 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LN 420 (987)
..++| ++|+.+...||.++|+.||.|. |+.+. ...|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE--TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 35556 9999999999999999999543 33332 4689999999999999999764
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.78 E-value=0.15 Score=47.26 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=44.4
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhC
Q 001976 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 420 (987)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LN 420 (987)
.++| ++|+.+...||.++|+.||.| .|+.+. ...|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 4556 999999999999999999943 444443 4789999999999999999875
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.63 E-value=0.25 Score=45.66 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=52.0
Q ss_pred CCCcEEEEccCCCCCChHHHHHhhcccCcEEEEE-eccc------ccceEEEEeCCHHHHHHHHHHccCcccccc
Q 001976 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TACK------HRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (987)
Q Consensus 275 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-itgk------srGfAFV~F~d~e~A~kAl~~LnG~~i~Gr 342 (987)
..+-+|.|+.||+.+||+++.+.++.+-++.... +.|+ .-.-|||.|.+.++.....+.++|..+.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3457899999999999999998888766543221 1111 123689999999999999999999887654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.43 E-value=0.42 Score=46.36 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=53.0
Q ss_pred CCcEEEEccCCCCCChHHHHHhhcccCcEEEEE-ecc------------------cccceEEEEeCCHHHHHHHHHHccC
Q 001976 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TAC------------------KHRGFVMISYYDIRAARNAMKALQN 336 (987)
Q Consensus 276 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-itg------------------ksrGfAFV~F~d~e~A~kAl~~LnG 336 (987)
...-|.|=+.|++ ....+.+.|++||.|.+-. ... ....+..|+|.+..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3466788888764 4566778999999998732 110 135688999999999999995 899
Q ss_pred ccccccccccccc
Q 001976 337 KPLRRRKLDIHYS 349 (987)
Q Consensus 337 ~~i~Gr~L~V~~a 349 (987)
+.|.|..|-|...
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999886666544
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.83 E-value=10 Score=44.42 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=46.8
Q ss_pred CcEEEEccCCCCCChHHHHHhhcccCcEEEEEecccccceEEEEeCCHHHHHHHHHHccC
Q 001976 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336 (987)
Q Consensus 277 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~e~A~kAl~~LnG 336 (987)
...++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4577777 9999999999999999997655555 455799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=50.15 E-value=23 Score=41.40 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=45.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCC
Q 001976 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (987)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~~Vri~~~skG~aFVeF~d~edA~kAL~~LNG 421 (987)
..++|+ +|..+...+|.++|+.||.| +|+.+. ...|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHHHHh
Confidence 456665 99999999999999999965 444443 56799999999999999998863
Done!